JunctionID	Junction location	Gene symbol	Gene description	Gene type	Tumor associated gene	Transcript ID	Tumor median	NT median	Normal median	Tumor frequency(sample number)	NT frequency(sample number)	Normal frequency(sample number)	Tumor specific types	Alternative splicing types	Annotation
UN_SMIM8_LS0017	chr6:87344607|87345167:+	SMIM8	small integral membrane protein 8	protein coding gene	no	.	2.190	0.198	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF213_LS024	chr17:80328477|80332006:+	RNF213	ring finger protein 213	protein coding gene	no	ENST00000508628.6;ENST00000582970.5;ENST00000559070.5	9.189	4.733	5.687	0.793(7602)	0.876(615)	0.931(16176)	non tumor-specific	nAS	yes
COX15_LS006	chr10:99724123|99726968:-	COX15	cytochrome c oxidase assembly homolog COX15	protein coding gene	no	ENST00000370483.9;ENST00000016171.5	36.289	25.932	16.408	0.988(9465)	0.997(700)	0.978(16997)	non tumor-specific	nAS	yes
UN_SLCO1A2_LS0012	chr12:21275424|21288136:-	SLCO1A2	solute carrier organic anion transporter family member 1A2	protein coding gene	no	.	0.947	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SEMA6D_LS019	chr15:47762319|47763016:+	SEMA6D	semaphorin 6D	protein coding gene	no	ENST00000558014.5;ENST00000536845.6;ENST00000558816.5;ENST00000389425.7;ENST00000355997.7;ENST00000316364.9;ENST00000354744.8;ENST00000358066.8;ENST00000389428.7	3.349	5.416	3.858	0.419(4013)	0.756(531)	0.831(14447)	non tumor-specific	nAS	yes
UN_PLB1_LS0034	chr2:28611499|28614031:+	PLB1	phospholipase B1	protein coding gene	no	.	3.031	0.083	0.000	0.011(103)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
TUBB8_LS005	chr10:48114|48804:-	TUBB8	tubulin beta 8 class VIII	protein coding gene	no	ENST00000568866.5	0.148	0.115	0.731	0.007(65)	0.004(3)	0.009(149)	non tumor-specific	nAS	yes
UN_CBFA2T2_LS0102	chr20:33629914|33631389:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	.	0.802	0.097	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
AEN_LS007	chr15:88626749|88629226:+	AEN	apoptosis enhancing nuclease	protein coding gene	no	ENST00000332810.3	16.668	7.319	9.870	0.976(9349)	0.983(690)	0.972(16888)	non tumor-specific	intron_retention	yes
FGR_LS002	chr1:27613350|27614430:-	FGR	FGR proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000374005.7;ENST00000399173.5;ENST00000374004.5;ENST00000374003.7	17.182	18.020	14.893	0.931(8920)	0.983(690)	0.955(16592)	non tumor-specific	alt_5prime;exon_skip	yes
PIK3CG_LS005	chr7:106865776|106867550:+	PIK3CG	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein coding gene	no	ENST00000359195.3	0.347	0.292	0.792	0.182(1740)	0.256(180)	0.1(1740)	non tumor-specific	alt_5prime	yes
UN_PDZK1_LS0021	chr1:145690133|145707317:-	PDZK1	PDZ domain containing 1	protein coding gene	no	.	3.071	0.309	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDOA_LS023	chr16:30068978|30069499:+	ALDOA	aldolase, fructose-bisphosphate A	protein coding gene	no	ENST00000564688.1;ENST00000564688.1	2.197	1.533	1.508	0.928(8894)	0.944(663)	0.759(13186)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC01361_UP_LS0021	chr1:83182286|83182433:-	LINC01361	long intergenic non-protein coding RNA 1361	lncRNA gene	no	.	1.010	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BABAM1_LS015	chr19:17274185|17275777:+	BABAM1	BRISC and BRCA1 A complex member 1	protein coding gene	no	ENST00000596335.5	0.178	0.424	1.652	0.848(8121)	0.818(574)	0.826(14362)	non tumor-specific	alt_3prime	yes
ARMCX5_LS011	chrX:102601032|102601464:+	ARMCX5	armadillo repeat containing X-linked 5	protein coding gene	no	ENST00000246174.6;ENST00000473968.5	4.625	2.943	2.658	0.924(8849)	0.962(675)	0.847(14716)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
STK16_LS020	chr2:219247757|219248193:+	STK16	serine/threonine kinase 16	protein coding gene	no	ENST00000409638.7;ENST00000396738.6;ENST00000409516.7;ENST00000496443.5;ENST00000409260.5;ENST00000478018.5	86.526	52.995	41.168	0.997(9549)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SAC3D1_LS0004	chr11:65041928|65043025:+	SAC3D1	SAC3 domain containing 1	protein coding gene	no	.	1.256	0.172	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MOCS2_LS0004	chr5:53108643|53109072:-	MOCS2	molybdenum cofactor synthesis 2	protein coding gene	no	.	2.010	0.064	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_KDM5C_LS0119	chrX:53220916|53223985:-	KDM5C	lysine demethylase 5C	protein coding gene	no	.	1.053	0.188	0.000	0.015(145)	0.02(14)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AGFG2_LS014	chr7:100563962|100564218:+	AGFG2	ArfGAP with FG repeats 2	protein coding gene	no	ENST00000300176.8;ENST00000429987.1	60.924	48.396	43.171	0.992(9508)	0.997(700)	0.979(17013)	non tumor-specific	nAS	yes
UN_CRAT_LS0027	chr9:129100629|129101883:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	.	5.001	0.220	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM207A_LS0010	chr21:44940647|44943684:+	FAM207A	family with sequence similarity 207 member A	protein coding gene	no	.	1.144	0.290	0.000	0.119(1143)	0.088(62)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SEC22B_LS001	chr1:120157192|120160384:-	SEC22B	SEC22 homolog B, vesicle trafficking protein	protein coding gene	no	ENST00000578049.3	21.645	17.110	61.582	0.922(8830)	0.934(656)	0.979(17021)	non tumor-specific	nAS	yes
CFDP1_LS005	chr16:75301905|75305024:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000562602.1	0.348	0.256	2.109	0.88(8428)	0.879(617)	0.856(14880)	non tumor-specific	exon_skip	yes
ZNF658_LS007	chr9:66903057|66903518:+	ZNF658	zinc finger protein 658	protein coding gene	no	ENST00000621015.4;ENST00000619435.1	0.285	0.129	0.714	0.05(481)	0.124(87)	0.173(3014)	non tumor-specific	nAS	yes
DGLUCY_LS072	chr14:91215556|91223679:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000523461.5;ENST00000523461.5;ENST00000523461.5	3.949	2.971	1.739	0.83(7952)	0.907(637)	0.782(13601)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATG101_LS008	chr12:52070483|52073575:+	ATG101	autophagy related 101	protein coding gene	no	ENST00000336854.8;ENST00000552544.5;ENST00000553049.5;ENST00000548915.1;ENST00000336854.8;ENST00000552544.5;ENST00000553049.5;ENST00000548915.1	96.792	53.941	40.745	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ADCY7_LS034	chr16:50311786|50312036:+	ADCY7	adenylate cyclase 7	protein coding gene	no	ENST00000394697.6;ENST00000254235.7	18.166	7.941	9.482	0.79(7565)	0.745(523)	0.946(16435)	non tumor-specific	nAS	yes
UN_SEC22B4P_UP_LS0004	chr1:146421149|146421995:-	SEC22B4P	SEC22 homolog B4, pseudogene	pseudogene	no	.	1.469	0.208	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C11orf80_LS0031	chr11:66788242|66796281:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	.	7.033	0.602	0.000	0.012(112)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
IQUB_LS004	chr7:123461616|123462648:-	IQUB	IQ motif and ubiquitin domain containing	protein coding gene	no	ENST00000484508.5	0.000	0.071	0.834	0(0)	0.001(1)	0.001(22)	non tumor-specific	nAS	yes
UN_KIAA1211_LS0022	chr4:56298349|56301498:+	KIAA1211	capping protein inhibiting regulator of actin dynamics	protein coding gene	no	.	0.951	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LYST_LS024	chr1:235738594|235741422:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000461526.1	0.603	0.199	1.774	0.706(6766)	0.728(511)	0.765(13299)	non tumor-specific	nAS	yes
UN_PUM2_LS0048	chr2:20297660|20307978:-	PUM2	pumilio RNA binding family member 2	protein coding gene	no	.	3.269	0.855	0.000	0.026(251)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MINDY3_LS006	chr10:15786648|15789247:-	MINDY3	MINDY lysine 48 deubiquitinase 3	protein coding gene	no	ENST00000378036.5;ENST00000477891.1;ENST00000277632.7	22.856	22.330	21.147	0.984(9428)	0.996(699)	0.975(16953)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CHST15_UP_LS0029	chr10:124306531|124307220:-	CHST15	carbohydrate sulfotransferase 15	protein coding gene	no	.	2.753	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHFR_LS0021	chr12:132827713|132828327:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	1.211	0.295	0.000	0.017(163)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_CBWD6_LS0009	chr9:41145332|41150220:-	CBWD6	COBW domain containing 6	protein coding gene	no	.	1.734	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MT-ATP6_LS0054	chrM:8970|9031:-	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	protein coding gene	no	.	486.323	219.434	0.000	0.075(718)	0.078(55)	0(0)	non tumor-specific	nAS	no
UN_UBAC2_LS0053	chr13:99386128|99386217:-	UBAC2	UBA domain containing 2	protein coding gene	no	.	8.080	1.946	0.000	0.013(122)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC092747.2_LS004	chr12:27135086|27139966:+	AC092747.2	-	pseudogene	no	ENST00000545069.1	3.476	2.239	0.672	0.272(2604)	0.456(320)	0.138(2391)	non tumor-specific	nAS	yes
WDCP_LS001	chr2:24031162|24032829:-	WDCP	WD repeat and coiled coil containing	protein coding gene	no	ENST00000295148.8	7.333	3.571	4.937	0.941(9012)	0.952(668)	0.95(16511)	non tumor-specific	exon_skip	yes
SMIM21_LS002	chr18:75418192|75418786:-	SMIM21	small integral membrane protein 21	protein coding gene	no	ENST00000584508.1	1.124	0.000	0.665	0(1)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_IFNGR2_LS0010	chr21:33421685|33425102:+	IFNGR2	interferon gamma receptor 2	protein coding gene	no	.	2.738	0.993	0.000	0.008(77)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ATP2B1_LS012	chr12:89603925|89604155:-	ATP2B1	ATPase plasma membrane Ca2+ transporting 1	protein coding gene	no	ENST00000359142.7;ENST00000261173.6;ENST00000428670.7;ENST00000393164.6;ENST00000549727.1;ENST00000359142.7;ENST00000261173.6;ENST00000428670.7;ENST00000393164.6;ENST00000549727.1	28.832	24.836	14.215	0.965(9241)	0.99(695)	0.977(16979)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RIOK1_LS009	chr6:7402897|7403941:+	RIOK1	RIO kinase 1	protein coding gene	no	ENST00000379834.6;ENST00000264874.7	41.846	19.424	23.896	0.987(9460)	0.994(698)	0.978(17007)	non tumor-specific	alt_5prime;exon_skip	yes
HAL_LS013	chr12:95986160|95987067:-	HAL	histidine ammonia-lyase	protein coding gene	no	ENST00000261208.7;ENST00000541929.5;ENST00000544080.6;ENST00000538703.5;ENST00000546999.5	8.276	9.660	1.809	0.12(1148)	0.138(97)	0.469(8154)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RGP1_LS0017	chr9:35756861|35757731:+	RGP1	RANBP2 like and GRIP domain containing 1	protein coding gene	no	.	1.079	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PPAT_LS014	chr4:56407716|56435350:-	PPAT	phosphoribosyl pyrophosphate amidotransferase	protein coding gene	no	ENST00000264220.6;ENST00000510643.5;ENST00000507724.1	9.084	3.425	2.833	0.875(8379)	0.922(647)	0.884(15359)	non tumor-specific	nAS	yes
ASCC2_LS004	chr22:29792535|29793360:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000307790.7;ENST00000542393.5;ENST00000487486.5;ENST00000458594.5;ENST00000397771.6	143.880	73.295	78.878	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
LINC00630_LS013	chrX:102865152|102884143:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	ENST00000431616.5;ENST00000440496.5	1.290	0.452	1.623	0.381(3655)	0.393(276)	0.755(13132)	non tumor-specific	nAS	yes
UN_GNLY_UP_LS0006	chr2:85632019|85658666:+	GNLY	granulysin	protein coding gene	no	.	2.522	2.779	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P3_LS0018	chr17:64751573|64751807:-	KPNA2P3	karyopherin subunit alpha 2 pseudogene 3	pseudogene	no	.	0.476	0.099	0.000	0.014(137)	0.011(8)	0(0)	non tumor-specific	nAS	no
C21orf58_LS022	chr21:46318220|46319287:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.;.	0.982	0.258	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00476_LS0018	chr9:95813922|95831631:-	LINC00476	long intergenic non-protein coding RNA 476	lncRNA gene	no	.	1.664	1.818	0.000	0.003(25)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_AC109927.1_LS0015	chr4:138928383|138930223:+	AC109927.1	-	lncRNA gene	no	.	4.389	0.683	0.000	0.017(163)	0.075(53)	0(0)	non tumor-specific	nAS	no
R3HDM1_LS034	chr2:135639122|135641536:+	R3HDM1	R3H domain containing 1	protein coding gene	no	ENST00000264160.8;ENST00000410054.5;ENST00000409606.5;ENST00000441871.5;ENST00000429703.6	2.359	2.133	3.288	0.777(7449)	0.786(552)	0.865(15034)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PIP5K1B_LS012	chr9:68818545|68822615:+	PIP5K1B	phosphatidylinositol-4-phosphate 5-kinase type 1 beta	protein coding gene	no	ENST00000541509.5;ENST00000265382.7;ENST00000377284.5;ENST00000437200.5;ENST00000440050.5;ENST00000478500.3	8.408	11.984	5.259	0.553(5303)	0.808(567)	0.871(15142)	non tumor-specific	alt_3prime	yes
UN_TONSL_LS0022	chr8:144435440|144436751:+	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	.	1.699	0.068	0.000	0.014(130)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_LDHA_LS0054	chr11:18407462|18407501:-	LDHA	lactate dehydrogenase A	protein coding gene	no	.	6.824	0.690	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GNPNAT1_LS0013	chr14:52775946|52776076:+	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	.	3.373	0.117	0.000	0.015(145)	0.006(4)	0(0)	non tumor-specific	nAS	no
NCAPD3_LS028	chr11:134183153|134184637:-	NCAPD3	non-SMC condensin II complex subunit D3	protein coding gene	no	ENST00000525964.6	0.850	0.407	0.960	0.307(2943)	0.236(166)	0.489(8492)	non tumor-specific	exon_skip	yes
TSPAN31_LS013	chr12:57746256|57746350:+	TSPAN31	tetraspanin 31	protein coding gene	no	ENST00000553089.5;ENST00000548093.5	0.069	0.648	0.914	0.555(5319)	0.675(474)	0.386(6710)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
WDR26_LS014	chr1:224401069|224404436:-	WDR26	WD repeat domain 26	protein coding gene	no	.;.	11.448	6.375	0.000	0.005(51)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MFSD10_LS0051	chr4:2933869|2934769:-	MFSD10	major facilitator superfamily domain containing 10	protein coding gene	no	.	2.349	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SPPL3_LS007	chr12:120782767|120783674:-	SPPL3	signal peptide peptidase like 3	protein coding gene	no	ENST00000353487.6;ENST00000536996.5;ENST00000543608.5;ENST00000543854.5;ENST00000543181.5	81.873	55.367	52.726	0.991(9492)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
SRRM2_LS002	chr16:2752846|2757472:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	ENST00000575009.5;ENST00000630499.2;ENST00000576415.5	0.522	0.199	5.663	0.824(7896)	0.842(591)	0.919(15978)	non tumor-specific	alt_5prime;exon_skip	yes
ATCAY_LS010	chr19:3908370|3909486:+	ATCAY	ATCAY kinesin light chain interacting caytaxin	protein coding gene	no	ENST00000450849.6;ENST00000597739.1;ENST00000600960.1	15.960	14.649	18.059	0.127(1221)	0.088(62)	0.254(4419)	non tumor-specific	nAS	yes
UN_TIAM2_LS0012	chr6:154860998|154863743:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	.	0.820	0.077	0.000	0.005(51)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_AL390760.1_LS0003	chr9:93148063|93148333:+	AL390760.1	-	lncRNA gene	no	.	1.651	1.392	0.000	0.01(96)	0.021(15)	0(0)	non tumor-specific	nAS	no
TPM1_LS011	chr15:63044098|63065961:+	TPM1	tropomyosin 1	protein coding gene	no	ENST00000560445.1	0.023	0.006	1.073	0.398(3815)	0.476(334)	0.128(2220)	non tumor-specific	nAS	yes
ANAPC15_LS019	chr11:72111496|72112734:-	ANAPC15	anaphase promoting complex subunit 15	protein coding gene	no	ENST00000535503.5	0.047	0.042	0.843	0.717(6871)	0.759(533)	0.408(7087)	non tumor-specific	exon_skip	yes
UN_CHD8_LS0016	chr14:21386176|21389175:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	.	2.324	0.200	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
RYR2_LS040	chr1:237625804|237627807:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	2.392	1.306	2.231	0.054(513)	0.141(99)	0.523(9083)	non tumor-specific	nAS	yes
UN_GLUL_LS0068	chr1:182384710|182385383:-	GLUL	glutamate-ammonia ligase	protein coding gene	no	.	228.773	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_C18orf21_LS0001	chr18:35972805|35972845:+	C18orf21	chromosome 18 open reading frame 21	protein coding gene	no	.	2.978	0.697	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
BCAM_LS014	chr19:44819192|44819346:+	BCAM	branched chain amino acid transaminase 2	protein coding gene	no	ENST00000270233.11;ENST00000611077.5	628.860	569.896	166.163	0.986(9450)	0.997(700)	0.974(16926)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL449212.1_LS0001	chr3:129383272|129383415:-	AL449212.1	-	pseudogene	no	.	2.367	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
FBLN2_LS003	chr3:13569080|13570315:+	FBLN2	fibulin 2	protein coding gene	no	ENST00000492059.5	0.201	0.608	1.039	0.12(1150)	0.178(125)	0.136(2367)	non tumor-specific	nAS	yes
PIK3R3_LS005	chr1:46055971|46061929:-	PIK3R3	phosphoinositide-3-kinase regulatory subunit 3	protein coding gene	no	ENST00000262741.9;ENST00000372006.5;ENST00000420542.5	17.191	13.229	11.100	0.939(8997)	0.957(672)	0.934(16235)	non tumor-specific	exon_skip	yes
CHRNA4_LS001	chr20:63346863|63349653:-	CHRNA4	cholinergic receptor nicotinic alpha 4 subunit	protein coding gene	no	ENST00000370263.8;ENST00000615287.4;ENST00000463705.5;ENST00000498043.6;ENST00000467563.3;ENST00000627000.1	4.038	2.731	6.606	0.099(952)	0.261(183)	0.288(5001)	non tumor-specific	nAS	yes
ZNF546_LS013	chr19:40006182|40007274:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000599504.5;ENST00000601138.5;ENST00000600094.5;ENST00000347077.8;ENST00000595225.1	1.461	0.978	1.909	0.367(3519)	0.551(387)	0.811(14097)	non tumor-specific	nAS	yes
STRIP2_LS023	chr7:129467450|129470649:+	STRIP2	striatin interacting protein 2	protein coding gene	no	ENST00000249344.6;ENST00000435494.2	6.997	4.298	3.268	0.544(5210)	0.258(181)	0.827(14380)	non tumor-specific	exon_skip	yes
UN_LRRC42_LS0001	chr1:53946126|53946449:+	LRRC42	leucine rich repeat containing 42	protein coding gene	no	.	0.488	0.077	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
RABL3_LS001	chr3:120689888|120690449:-	RABL3	RAB, member of RAS oncogene family like 3	protein coding gene	no	ENST00000273375.7;ENST00000648525.1;ENST00000473654.5;ENST00000485161.5;ENST00000481015.5;ENST00000465022.5;ENST00000491398.5;ENST00000483733.1	23.139	19.753	14.886	0.94(9007)	0.969(680)	0.976(16971)	non tumor-specific	alt_5prime;exon_skip	yes
CARD8_LS048	chr19:48249847|48255792:-	CARD8	caspase recruitment domain family member 8	protein coding gene	no	ENST00000517510.5;ENST00000520753.5;ENST00000521613.5;ENST00000519940.5;ENST00000522889.5;ENST00000519332.5;ENST00000520007.5;ENST00000521437.1	1.569	1.283	8.406	0.949(9092)	0.963(676)	0.975(16945)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL513124.1_UP_LS0026	chr9:74477005|74477667:-	AL513124.1	-	pseudogene	no	.	2.891	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EMC3_LS011	chr3:9977446|9978210:-	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	ENST00000497557.1	0.146	0.113	0.629	0.91(8719)	0.94(660)	0.058(1010)	non tumor-specific	nAS	yes
UN_PTCH2_LS0016	chr1:44832341|44833023:-	PTCH2	patched 2	protein coding gene	yes	.	1.367	0.218	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LRP8_LS016	chr1:53260605|53262068:-	LRP8	LDL receptor related protein 8	protein coding gene	no	ENST00000306052.10;ENST00000371454.6;ENST00000465675.5;ENST00000354412.7;ENST00000480045.5;ENST00000347547.6;ENST00000459674.5;ENST00000460214.5;ENST00000481431.1	10.396	3.905	4.282	0.802(7687)	0.641(450)	0.89(15463)	non tumor-specific	alt_3prime;exon_skip	yes
NPIPB4_LS047	chr16:21865063|21879378:-	NPIPB4	nuclear pore complex interacting protein family member B4	protein coding gene	no	.;.	1.718	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
KBTBD11-OT1_LS026	chr8:1898525|1903281:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000635773.1	10.629	9.301	22.148	0.84(8048)	0.902(633)	0.946(16446)	non tumor-specific	exon_skip	yes
UN_MLF2_LS0023	chr12:6748191|6748399:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	3.333	0.140	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
RYR3_LS096	chr15:33825676|33827199:+	RYR3	ryanodine receptor 3	protein coding gene	no	.;.	1.509	0.251	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ZNF318_LS014	chr6:43365440|43368967:-	ZNF318	zinc finger protein 318	protein coding gene	no	ENST00000605935.5;ENST00000361428.2	1.815	0.921	3.780	0.815(7809)	0.853(599)	0.928(16133)	non tumor-specific	nAS	yes
HDAC6_LS019	chrX:48802785|48802920:+	HDAC6	histone deacetylase 6	protein coding gene	no	ENST00000477561.5	0.037	0.042	1.136	0.538(5157)	0.617(433)	0.626(10887)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
TRAPPC4_LS014	chr11:119021886|119023321:+	TRAPPC4	trafficking protein particle complex 4	protein coding gene	no	ENST00000533632.5;ENST00000528230.5;ENST00000525303.5;ENST00000434101.6;ENST00000531290.5;ENST00000359005.8;ENST00000525079.5;ENST00000533012.1;ENST00000533149.1;ENST00000524797.1	41.068	27.075	100.070	0.989(9478)	0.974(684)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_DGLUCY_LS0058	chr14:91215793|91223676:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	.	4.807	0.575	0.000	0.016(156)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TSEN54_LS033	chr17:75522535|75523663:+	TSEN54	tRNA splicing endonuclease subunit 54	protein coding gene	no	.;.	5.031	0.046	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
HYDIN_LS015	chr16:70849947|70850448:-	HYDIN	HYDIN axonemal central pair apparatus protein	protein coding gene	no	ENST00000393567.6;ENST00000378856.8	2.035	1.994	1.014	0.121(1164)	0.258(181)	0.056(971)	non tumor-specific	nAS	yes
ADGRL2_LS049	chr1:81985355|81987260:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	ENST00000472424.1	1.365	2.555	4.427	0.798(7643)	0.925(649)	0.818(14214)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DQX1_LS005	chr2:74520034|74522580:-	DQX1	DEAQ-box RNA dependent ATPase 1	protein coding gene	no	ENST00000418139.5;ENST00000393951.6;ENST00000404568.3;ENST00000483555.5;ENST00000473508.1	4.533	2.471	2.008	0.319(3054)	0.178(125)	0.328(5700)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ROCK1_LS0013	chr18:21015479|21017021:-	ROCK1	Rho associated coiled-coil containing protein kinase 1	protein coding gene	yes	.	1.892	0.384	0.000	0.009(90)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GRAMD4_LS0048	chr22:46665796|46666825:+	GRAMD4	GRAM domain containing 4	protein coding gene	no	.	5.939	0.748	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NRXN2_LS029	chr11:64668604|64677014:-	NRXN2	neurexin 2	protein coding gene	no	ENST00000377559.7;ENST00000409571.5	2.103	6.062	7.590	0.069(665)	0.011(8)	0.195(3387)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRM5-AS1_UP_LS0031	chr11:88422621|88423487:+	GRM5-AS1	GRM5 antisense RNA 1	lncRNA gene	no	.	1.552	0.269	0.000	0.024(227)	0.013(9)	0(0)	non tumor-specific	nAS	no
RPTOR_LS007	chr17:80709114|80730560:+	RPTOR	regulatory associated protein of MTOR complex 1	protein coding gene	no	ENST00000572733.1	0.038	0.013	1.446	0.558(5349)	0.603(423)	0.103(1791)	non tumor-specific	nAS	yes
UN_STAG3_LS0004	chr7:100182839|100218617:+	STAG3	stromal antigen 3	protein coding gene	no	.	0.935	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_USP20_LS0022	chr9:129849617|129849813:+	USP20	ubiquitin specific peptidase 20	protein coding gene	no	.	1.022	0.162	0.000	0.013(122)	0.007(5)	0(0)	non tumor-specific	nAS	no
ESM1_LS001	chr5:54979435|54981997:-	ESM1	endothelial cell specific molecule 1	protein coding gene	no	ENST00000381405.4	28.529	5.701	1.679	0.858(8219)	0.678(476)	0.447(7762)	non tumor-specific	exon_skip	yes
UN_THADA_LS0084	chr2:43430302|43482727:-	THADA	THADA armadillo repeat containing	protein coding gene	no	.	1.248	0.526	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	nAS	no
CARD19_LS020	chr9:93112289|93112992:+	CARD19	caspase recruitment domain family member 19	protein coding gene	no	ENST00000375464.6;ENST00000466409.1;ENST00000468781.5;ENST00000490488.5;ENST00000488630.1	56.847	26.986	99.682	0.972(9314)	0.98(688)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FYN_LS027	chr6:111720062|111780566:-	FYN	FYN proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000368682.7;ENST00000354650.7;ENST00000368667.6;ENST00000523238.5;ENST00000524310.5;ENST00000523574.5;ENST00000518630.5;ENST00000523570.5;ENST00000484067.6;ENST00000521062.5;ENST00000521361.5;ENST00000487824.2	27.492	18.440	39.510	0.954(9136)	0.983(690)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WASHC1_LS0043	chr9:18492|19026:-	WASHC1	WASH complex subunit 1	protein coding gene	no	.	3.604	0.816	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL513210.1_UP_LS0001	chr6:168726237|168726391:+	AL513210.1	-	lncRNA gene	no	.	6.105	0.404	0.000	0.021(202)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_AL023754.1_LS0013	chr1:209533200|209535666:-	AL023754.1	-	lncRNA gene	no	.	2.445	0.207	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	nAS	no
FETUB_LS001	chr3:186636228|186640460:+	FETUB	fetuin B	protein coding gene	no	ENST00000450521.5	2.444	1.798	1.811	0.07(670)	0.073(51)	0.098(1709)	non tumor-specific	exon_skip	yes
SNX1_LS018	chr15:64130029|64130228:+	SNX1	sorting nexin 1	protein coding gene	no	ENST00000560829.5;ENST00000380285.7;ENST00000261889.9;ENST00000559844.5;ENST00000560260.5;ENST00000561026.5	150.126	102.774	123.246	0.995(9534)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_AC098487.1_UP_LS0004	chr4:102450067|102501249:-	AC098487.1	-	lncRNA gene	no	.	1.110	0.790	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
GCN1_LS051	chr12:120176217|120177447:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6;ENST00000548821.1	27.219	17.769	13.402	0.93(8913)	0.962(675)	0.963(16739)	non tumor-specific	alt_3prime	yes
UN_IQCG_LS0029	chr3:197908571|197908645:+	IQCG	IQ motif containing G	protein coding gene	no	.	2.183	0.228	0.000	0.023(224)	0.009(6)	0(0)	non tumor-specific	nAS	no
ZNF320_LS029	chr19:52893619|52897520:-	ZNF320	zinc finger protein 320	protein coding gene	no	ENST00000601334.5;ENST00000601334.5;ENST00000601334.5	0.097	0.143	0.700	0.388(3718)	0.46(323)	0.174(3032)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AC090955.1_UP_LS0004	chr3:5056297|5059934:+	AC090955.1	-	pseudogene	no	.	2.594	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00539_LS0024	chr13:21333081|21345783:+	LINC00539	long intergenic non-protein coding RNA 539	lncRNA gene	no	.	0.761	0.075	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
COQ7_LS006	chr16:19072106|19073921:+	COQ7	coenzyme Q7, hydroxylase	protein coding gene	no	ENST00000321998.9;ENST00000568985.5;ENST00000566110.5;ENST00000569312.5;ENST00000544894.6;ENST00000561858.5;ENST00000569127.1	32.491	20.874	18.828	0.995(9535)	0.997(700)	0.977(16988)	non tumor-specific	alt_5prime;exon_skip	yes
BRF2_LS006	chr8:37847175|37848596:-	BRF2	ZFP36 ring finger protein like 2	protein coding gene	yes	ENST00000220659.10;ENST00000520601.5	33.117	17.670	14.636	0.986(9445)	0.996(699)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_TNFSF12-TNFSF13_LS0032	chr17:7557322|7557433:-	TNFSF12-TNFSF13	TNFSF12-TNFSF13 readthrough	protein coding gene	no	.	1.435	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CPED1_LS0003	chr7:120989870|121046887:+	CPED1	cadherin like and PC-esterase domain containing 1	protein coding gene	no	.	1.317	0.735	0.000	0.008(74)	0.06(42)	0(0)	non tumor-specific	exon_skip	no
EIF2B5_LS001	chr3:184135580|184136612:+	EIF2B5	eukaryotic translation initiation factor 2B subunit epsilon	protein coding gene	no	ENST00000491144.5;ENST00000273783.8;ENST00000649814.1;ENST00000648314.1;ENST00000465218.3;ENST00000432569.2;ENST00000647636.1;ENST00000648890.1;ENST00000648682.1;ENST00000647909.1;ENST00000648599.1;ENST00000649688.1;ENST00000648915.1;ENST00000481054.5;ENST00000492226.2;ENST00000648630.1;ENST00000432982.5;ENST00000468748.6;ENST00000648256.1;ENST00000650270.1;ENST00000491008.6	17.683	10.488	46.800	0.945(9056)	0.943(662)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PHF14_LS012	chr7:11036688|11036985:+	PHF14	PHD finger protein 14	protein coding gene	no	ENST00000642461.1;ENST00000521747.5;ENST00000403050.7;ENST00000423760.6;ENST00000634607.1;ENST00000490957.5	49.975	23.824	20.501	0.99(9489)	0.996(699)	0.977(16989)	non tumor-specific	nAS	yes
AC092142.1_LS002	chr16:82044608|82063093:-	AC092142.1	-	lncRNA gene	no	ENST00000567021.1	3.008	0.882	0.838	0.076(727)	0.077(54)	0.126(2192)	non tumor-specific	nAS	yes
UN_GMDS-DT_LS0033	chr6:2269799|2329283:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	.	2.885	0.200	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CHCHD3_LS0115	chr7:133035074|133035427:+	CHCHD3	coiled-coil-helix-coiled-coil-helix domain containing 3	protein coding gene	no	.	52.971	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE3C_LS0004	chr7:157139161|157139227:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	1.252	0.062	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_UBR4_LS0033	chr1:19081573|19084366:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	.	13.336	5.186	0.000	0.024(229)	0.019(13)	0(0)	non tumor-specific	alt_5prime	no
FAAP24_LS009	chr19:32977316|32977497:+	FAAP24	FA core complex associated protein 24	protein coding gene	no	ENST00000591791.1	0.523	0.011	0.590	0.003(24)	0.001(1)	0(5)	non tumor-specific	nAS	yes
UN_CHURC1-FNTB_LS0098	chr14:64947707|64947787:+	CHURC1-FNTB	CHURC1-FNTB readthrough	protein coding gene	no	.	4.947	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HES2_LS005	chr1:6419153|6419607:-	HES2	hes family bHLH transcription factor 2	protein coding gene	no	ENST00000487437.5	0.083	0.060	0.776	0.071(679)	0.038(27)	0.06(1043)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CELF2_LS023	chr10:11314258|11325836:+	CELF2	CUGBP Elav-like family member 2	protein coding gene	no	.;.	15.214	1.602	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NFATC2_LS0008	chr20:51395570|51395608:+	NFATC2	nuclear factor of activated T cells 2	protein coding gene	yes	.	3.900	0.389	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CACNA2D4_LS0003	chr12:1795780|1795970:-	CACNA2D4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein coding gene	no	.	1.119	0.084	0.000	0.009(82)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
VCP_LS003	chr9:35059219|35059493:-	VCP	valosin containing protein	protein coding gene	no	ENST00000358901.10;ENST00000493886.5;ENST00000479300.1	551.478	305.943	346.265	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AKAP13_LS039	chr15:85718159|85719076:+	AKAP13	A-kinase anchoring protein 13	protein coding gene	yes	ENST00000394518.6;ENST00000361243.6;ENST00000560676.5;ENST00000394510.6;ENST00000560579.5;ENST00000558644.2	18.049	17.119	19.695	0.921(8827)	0.98(688)	0.96(16689)	non tumor-specific	nAS	yes
LINC01192_LS014	chr3:163207757|163220101:-	LINC01192	long intergenic non-protein coding RNA 1192	lncRNA gene	no	ENST00000489012.5	2.293	0.000	0.690	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
ANK3_LS043	chr10:60088358|60105905:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000280772.6;ENST00000373827.6;ENST00000355288.6;ENST00000503366.5;ENST00000616444.4;ENST00000610321.4;ENST00000622427.4;ENST00000467420.6	6.135	16.160	13.674	0.712(6823)	0.937(658)	0.925(16071)	non tumor-specific	alt_3prime	yes
CYP2T1P_LS006	chr19:40810495|40810662:-	CYP2T1P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudogene	no	ENST00000432607.2	0.709	0.200	0.699	0.001(7)	0.003(2)	0.015(257)	non tumor-specific	nAS	yes
MEIS1_LS006	chr2:66438062|66439598:+	MEIS1	Meis homeobox 1	protein coding gene	yes	.;.	0.247	0.400	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ARHGEF26_LS005	chr3:154129719|154149389:+	ARHGEF26	Rho guanine nucleotide exchange factor 26	protein coding gene	no	ENST00000356448.8;ENST00000465093.5;ENST00000496710.5	8.073	9.562	12.282	0.603(5775)	0.903(634)	0.903(15691)	non tumor-specific	exon_skip	yes
UN_CD24_LS0098	chr6:106971332|106971520:+	CD24	CD24 molecule	protein coding gene	yes	.	8.434	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CYP4B1_LS0029	chr1:46818781|46818870:-	CYP4B1	cytochrome P450 family 4 subfamily B member 1	protein coding gene	no	.	1.450	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SNX13_LS036	chr7:17897446|17940284:-	SNX13	sorting nexin 13	protein coding gene	no	ENST00000428135.7;ENST00000611725.4;ENST00000409076.6;ENST00000444712.5;ENST00000409604.1;ENST00000475800.5	10.893	9.215	7.058	0.881(8437)	0.947(665)	0.963(16740)	non tumor-specific	exon_skip	yes
CEP131_LS004	chr17:81191084|81191193:-	CEP131	centrosomal protein 131	protein coding gene	no	ENST00000374782.7;ENST00000269392.8;ENST00000570817.5;ENST00000573053.5;ENST00000450824.6;ENST00000575907.5;ENST00000571292.1	17.773	5.756	23.464	0.987(9455)	0.959(673)	0.979(17012)	non tumor-specific	nAS	yes
GTF3C3_LS010	chr2:196776629|196778896:-	GTF3C3	general transcription factor IIIC subunit 3	protein coding gene	no	ENST00000263956.7	23.545	12.398	16.513	0.941(9015)	0.981(689)	0.976(16967)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CD6_LS0023	chr11:61018013|61018292:+	CD6	CD6 molecule	protein coding gene	no	.	7.795	4.157	0.000	0.371(3554)	0.332(233)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_GTF2E2_UP_LS0001	chr8:30712088|30728047:-	GTF2E2	general transcription factor IIE subunit 2	protein coding gene	no	.	0.729	0.152	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL11A2_LS029	chr6:33172103|33172289:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	ENST00000374708.8;ENST00000341947.6;ENST00000361917.5	5.112	1.068	2.526	0.23(2202)	0.103(72)	0.839(14589)	non tumor-specific	nAS	yes
SH3D21_LS031	chr1:36320798|36320915:+	SH3D21	SH3 domain containing 21	protein coding gene	no	ENST00000453908.7;ENST00000505871.6;ENST00000480549.5;ENST00000474766.1;ENST00000453908.7;ENST00000505871.6;ENST00000480549.5;ENST00000474766.1	5.169	2.039	8.780	0.809(7748)	0.769(540)	0.961(16705)	non tumor-specific	alt_3prime;alt_5prime	yes
SUGP1_LS006	chr19:19280291|19296989:-	SUGP1	SURP and G-patch domain containing 1	protein coding gene	no	ENST00000589144.5;ENST00000247001.9;ENST00000591007.6;ENST00000588731.6;ENST00000587119.5	66.900	34.747	48.046	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DNAH10_LS054	chr12:123881813|123887142:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	3.352	1.644	1.052	0.013(129)	0.066(46)	0.106(1850)	non tumor-specific	nAS	yes
UN_RF00019_UP_LS0052	chr1:161592242|161677328:+	RF00019	-	small non-coding RNA gene	no	.	23.230	5.357	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02210-CRHR1_LS0039	chr17:45637686|45639369:+	LINC02210-CRHR1	LINC02210-CRHR1 readthrough	protein coding gene	no	.	3.933	0.363	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC022113.1_LS002	chr5:16622032|16625415:+	AC022113.1	-	lncRNA gene	no	ENST00000499131.1	14.159	0.000	0.912	0.008(72)	0(0)	0.242(4207)	non tumor-specific	nAS	yes
UN_AC016651.1_UP_LS0008	chr5:15243767|15425575:-	AC016651.1	-	lncRNA gene	no	.	1.755	0.581	0.000	0.003(30)	0.014(10)	0(0)	non tumor-specific	nAS	no
GAGE1_LS004	chrX:49600844|49603668:+	GAGE1	G antigen 1	protein coding gene	no	ENST00000610680.4;ENST00000381709.6;ENST00000381700.10;ENST00000619375.1	46.024	8.233	0.696	0.106(1016)	0.007(5)	0.021(362)	non tumor-specific	nAS	yes
PPDPFL_LS011	chr8:49074333|49075235:+	PPDPFL	pancreatic progenitor cell differentiation and proliferation factor like	protein coding gene	no	ENST00000399653.8;ENST00000399653.8	1.615	0.190	1.217	0.064(612)	0.057(40)	0.288(5003)	non tumor-specific	alt_3prime;alt_5prime	yes
AC068759.1_LS004	chr3:173336594|173336759:+	AC068759.1	-	lncRNA gene	no	ENST00000447709.1	1.079	0.000	0.813	0(2)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_TTLL5_LS0010	chr14:75651244|75651286:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	.	6.929	0.736	0.000	0.011(110)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ATP5IF1_LS0006	chr1:28236410|28246576:-	ATP5IF1	ATP synthase inhibitory factor subunit 1	protein coding gene	no	.	0.782	0.025	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRPL9_LS001	chr1:151760031|151760816:-	MRPL9	mitochondrial ribosomal protein L9	protein coding gene	no	ENST00000468006.1	1.963	0.839	2.192	0.873(8367)	0.87(611)	0.873(15182)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LRRFIP2_LS0023	chr3:37109700|37110991:-	LRRFIP2	LRR binding FLII interacting protein 2	protein coding gene	no	.	2.348	7.340	0.000	0.009(86)	0.026(18)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MLLT10_LS0053	chr10:21713950|21723950:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	.	1.317	0.103	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
PRKD2_LS010	chr19:46691807|46691933:-	PRKD2	protein kinase D2	protein coding gene	no	ENST00000601806.5;ENST00000597390.5;ENST00000291281.8;ENST00000433867.5;ENST00000600194.5;ENST00000599019.5;ENST00000597589.5;ENST00000595515.5	75.736	35.655	50.986	0.996(9543)	0.997(700)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC159_LS041	chr19:11351003|11352057:+	CCDC159	coiled-coil domain containing 159	protein coding gene	no	.;.	2.587	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01619_LS0024	chr12:91994794|92141651:-	LINC01619	long intergenic non-protein coding RNA 1619	lncRNA gene	no	.	0.935	0.325	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_SRRM2_LS0300	chr16:2766841|2766905:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	9.410	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
DOP1A_LS026	chr6:83140403|83141921:+	DOP1A	DOP1 leucine zipper like protein A	protein coding gene	no	ENST00000237163.9;ENST00000349129.6;ENST00000369739.7;ENST00000484282.1	14.632	12.362	21.920	0.907(8693)	0.979(687)	0.973(16910)	non tumor-specific	nAS	yes
THADA_LS027	chr2:43485325|43486437:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000469323.5	0.279	0.162	0.948	0.124(1185)	0.187(131)	0.189(3288)	non tumor-specific	intron_retention	yes
UN_GSKIP_LS0009	chr14:96382505|96384171:+	GSKIP	GSK3B interacting protein	protein coding gene	no	.	0.845	0.129	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NOTCH4_LS011	chr6:32201006|32202076:-	NOTCH4	notch receptor 4	protein coding gene	yes	.;.;.	0.775	0.442	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
TMOD2_LS003	chr15:51766567|51768262:+	TMOD2	tropomodulin 2	protein coding gene	no	ENST00000249700.8;ENST00000435126.6	7.292	4.521	4.786	0.639(6126)	0.798(560)	0.924(16068)	non tumor-specific	exon_skip	yes
UN_AL353807.3_UP_LS0046	chr1:155670330|155767444:-	AL353807.3	-	pseudogene	no	.	10.310	0.239	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
USH2A_LS060	chr1:216247226|216250903:-	USH2A	usherin	protein coding gene	no	ENST00000307340.7;ENST00000366942.3	6.131	0.000	0.739	0.004(35)	0(0)	0.019(322)	non tumor-specific	nAS	yes
PAQR6_LS005	chr1:156244789|156245142:-	PAQR6	progestin and adipoQ receptor family member 6	protein coding gene	no	ENST00000612424.4;ENST00000649236.1	0.005	0.006	1.195	0.075(722)	0.007(5)	0.199(3459)	non tumor-specific	alt_3prime;exon_skip	yes
ATP8B1_LS031	chr18:57701313|57704555:-	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	ENST00000283684.9;ENST00000648908.1;ENST00000642462.1;ENST00000648039.1;ENST00000589147.5;ENST00000591728.1	15.326	24.518	5.935	0.764(7322)	0.954(670)	0.79(13733)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GTPBP8_UP_LS0009	chr3:112814727|112819758:+	GTPBP8	GTP binding protein 8 (putative)	protein coding gene	no	.	1.828	0.462	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
FRMD3_LS005	chr9:83290727|83298748:-	FRMD3	FERM domain containing 3	protein coding gene	no	ENST00000376434.5;ENST00000376438.5;ENST00000304195.7;ENST00000621208.4	6.011	6.831	5.199	0.509(4878)	0.825(579)	0.907(15760)	non tumor-specific	nAS	yes
UBE3B_LS040	chr12:109533558|109533657:+	UBE3B	ubiquitin protein ligase E3B	protein coding gene	no	ENST00000605142.1	0.583	0.473	0.787	0.385(3691)	0.376(264)	0.36(6266)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AC005306.1_UP_LS0003	chr19:1981481|1981714:+	AC005306.1	-	lncRNA gene	no	.	1.506	1.677	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZNF362_LS0025	chr1:33295015|33295231:+	ZNF362	zinc finger protein 362	protein coding gene	no	.	4.749	0.901	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_PLSCR2_LS0012	chr3:146419143|146422111:-	PLSCR2	phospholipid scramblase 2	protein coding gene	no	.	1.059	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
HLA-G_LS012	chr6:29829932|29830378:+	HLA-G	major histocompatibility complex, class I, G	protein coding gene	no	ENST00000376828.6;ENST00000428701.5;ENST00000360323.10;ENST00000478355.5;ENST00000376818.7;ENST00000478519.5;ENST00000376815.3	4.836	7.091	1.778	0.483(4629)	0.536(376)	0.458(7958)	non tumor-specific	nAS	yes
UN_RHOXF1-AS1_LS0013	chrX:120060447|120120852:+	RHOXF1-AS1	RHOXF1 antisense RNA 1	lncRNA gene	no	.	1.300	0.752	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCDH7_LS007	chr4:30869087|30920153:+	PCDH7	protocadherin 7	protein coding gene	no	ENST00000621961.1	0.001	0.080	0.650	0.134(1282)	0.145(102)	0.003(48)	non tumor-specific	nAS	yes
MCAM_LS002	chr11:119309915|119310349:-	MCAM	melanoma cell adhesion molecule	protein coding gene	no	ENST00000264036.5;ENST00000528533.5;ENST00000525586.5	126.162	95.010	103.760	0.977(9364)	0.991(696)	0.97(16867)	non tumor-specific	alt_3prime;exon_skip	yes
CPSF4_LS027	chr7:99454136|99456432:+	CPSF4	cleavage and polyadenylation specific factor 4	protein coding gene	no	ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1;ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1;ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1	39.696	16.541	29.916	0.932(8931)	0.93(653)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LEPROTL1_LS0011	chr8:30099986|30101898:+	LEPROTL1	leptin receptor overlapping transcript like 1	protein coding gene	no	.	1.381	0.339	0.000	0.037(352)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_ITPR2_LS0038	chr12:26428088|26429414:-	ITPR2	inositol 1,4,5-trisphosphate receptor type 2	protein coding gene	no	.	2.114	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NHSL2_LS0015	chrX:72027699|72138441:+	NHSL2	NHS like 2	protein coding gene	no	.	1.783	0.587	0.000	0.011(107)	0.027(19)	0(0)	non tumor-specific	exon_skip	no
UN_AC136475.9_UP_LS0010	chr11:331342|331868:+	AC136475.9	-	lncRNA gene	no	.	3.389	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUBA1C_LS0015	chr12:49265166|49272459:-	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	1.810	0.203	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0272	chr14:104944981|104947952:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.720	0.925	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_NIPA2_LS0028	chr15:22853268|22855501:+	NIPA2	NIPA magnesium transporter 2	protein coding gene	no	.	3.131	0.408	0.000	0.008(80)	0.01(7)	0(0)	non tumor-specific	nAS	no
ENTR1_LS008	chr9:136405202|136407145:-	ENTR1	endosome associated trafficking regulator 1	protein coding gene	no	.;.;.	15.941	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TAF1B_LS0008	chr2:9843908|9845220:+	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein coding gene	no	.	0.799	0.251	0.000	0.011(106)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
GSTZ1_LS028	chr14:77329807|77330310:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000216465.9;ENST00000361389.8;ENST00000554279.5;ENST00000557639.5;ENST00000349555.7;ENST00000556627.5;ENST00000557053.5;ENST00000393734.5;ENST00000555093.1;ENST00000553586.5	80.815	68.300	27.712	0.996(9539)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NKAIN3_LS0021	chr8:62747129|62749703:+	NKAIN3	sodium/potassium transporting ATPase interacting 3	protein coding gene	no	.	1.651	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGLC2_UP_LS0147	chr22:22893805|22899643:+	IGLC2	immunoglobulin lambda constant 2	no	no	.	619.752	20.071	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
POLA1_LS035	chrX:24821583|24826427:+	POLA1	DNA polymerase alpha 1, catalytic subunit	protein coding gene	no	ENST00000379068.7;ENST00000611764.1;ENST00000379059.7;ENST00000494204.1	17.230	6.634	7.379	0.955(9146)	0.967(679)	0.962(16718)	non tumor-specific	alt_5prime	yes
UN_MDS2_LS0001	chr1:23592685|23601956:+	MDS2	myelodysplastic syndrome 2 translocation associated	lncRNA gene	no	.	2.143	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
SLC36A1_LS025	chr5:151479489|151480057:+	SLC36A1	solute carrier family 36 member 1	protein coding gene	no	ENST00000616007.4;ENST00000517628.1	0.217	0.050	0.744	0.14(1339)	0.094(66)	0.073(1265)	non tumor-specific	nAS	yes
ACSS3_LS018	chr12:81233471|81253307:+	ACSS3	acyl-CoA synthetase short chain family member 3	protein coding gene	no	ENST00000548058.5;ENST00000261206.7;ENST00000548324.5	29.726	25.992	11.957	0.702(6722)	0.926(650)	0.927(16112)	non tumor-specific	exon_skip	yes
UN_LRRC20_LS0003	chr10:70300082|70300174:-	LRRC20	leucine rich repeat containing 20	protein coding gene	no	.	3.338	0.256	0.000	0.018(176)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC079226.1_UP_LS0053	chr4:182877760|182880577:-	AC079226.1	-	lncRNA gene	no	.	1.054	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
STX16_LS014	chr20:58667597|58667987:+	STX16	syntaxin 16	protein coding gene	no	ENST00000361830.7;ENST00000458280.5;ENST00000355957.9;ENST00000312283.12;ENST00000412911.5;ENST00000359617.8;ENST00000371141.8;ENST00000476384.5;ENST00000483434.5;ENST00000496117.5;ENST00000371132.8;ENST00000496003.5;ENST00000467096.5;ENST00000358029.8;ENST00000464640.5;ENST00000493301.5;ENST00000468590.1;ENST00000438253.1	30.392	14.681	117.397	0.981(9398)	0.987(693)	0.979(17021)	non tumor-specific	alt_5prime;intron_retention	yes
UN_LINC01999_UP_LS0012	chr17:60552195|60552245:+	LINC01999	long intergenic non-protein coding RNA 1999	lncRNA gene	no	.	1.496	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LIPM_LS003	chr10:88808415|88813097:+	LIPM	lipase family member M	protein coding gene	no	ENST00000404743.8;ENST00000539337.2	2.660	0.434	11.948	0.014(135)	0.019(13)	0.089(1544)	non tumor-specific	nAS	yes
UN_OSGEP_LS0018	chr14:20451436|20451974:-	OSGEP	O-sialoglycoprotein endopeptidase	protein coding gene	no	.	2.555	0.638	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
JAZF1_LS007	chr7:27895416|27991909:-	JAZF1	JAZF zinc finger 1	protein coding gene	no	ENST00000427814.5;ENST00000283928.9;ENST00000649905.1;ENST00000430432.5;ENST00000447620.5;ENST00000420835.4	18.231	15.149	13.452	0.942(9026)	0.99(695)	0.971(16872)	non tumor-specific	exon_skip	yes
UN_PPP1R21_UP_LS0002	chr2:48420022|48420735:+	PPP1R21	protein phosphatase 1 regulatory subunit 21	protein coding gene	no	.	2.065	0.581	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC109466.1_LS010	chr5:164486741|164523947:+	AC109466.1	-	lncRNA gene	no	ENST00000517508.5	0.976	0.000	0.830	0.003(28)	0(0)	0.016(286)	non tumor-specific	nAS	yes
CPNE8_LS013	chr12:38724899|38730283:-	CPNE8	copine 8	protein coding gene	no	ENST00000331366.9;ENST00000360449.3	10.530	8.011	5.431	0.756(7242)	0.943(662)	0.929(16148)	non tumor-specific	exon_skip	yes
UN_RABGEF1_LS0038	chr7:66711144|66712167:+	RABGEF1	RAB guanine nucleotide exchange factor 1	protein coding gene	no	.	1.657	0.355	0.000	0.039(373)	0.017(12)	0(0)	non tumor-specific	nAS	no
NR2E3_LS008	chr15:71812511|71813389:+	NR2E3	nuclear receptor subfamily 2 group E member 3	protein coding gene	no	ENST00000621736.4;ENST00000617575.4;ENST00000621098.1	1.680	0.178	0.822	0.03(291)	0.014(10)	0.176(3056)	non tumor-specific	nAS	yes
UN_KIAA1109_LS0078	chr4:122348743|122349158:+	KIAA1109	KIAA1109	protein coding gene	no	.	2.221	0.438	0.000	0.016(154)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_PA2G4_LS0004	chr12:56104796|56106588:+	PA2G4	proliferation-associated 2G4	protein coding gene	yes	.	14.450	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
EPS8L3_LS023	chr1:109759117|109759238:-	EPS8L3	EPS8 like 3	protein coding gene	no	ENST00000361852.8;ENST00000369805.7;ENST00000361965.8;ENST00000472325.5;ENST00000494151.1	32.063	21.759	1.387	0.252(2415)	0.171(120)	0.129(2245)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TP63_LS019	chr3:189872995|189880064:+	TP63	symbol withdrawn, see [HGNC:15979](/data/gene-symbol-report/#!/hgnc_id/HGNC:15979)	protein coding gene	yes	ENST00000418709.6;ENST00000437221.5	1.178	0.210	1.335	0.184(1759)	0.164(115)	0.146(2543)	non tumor-specific	nAS	yes
UN_RNA5SP283_UP_LS0002	chr9:62828454|62837267:-	RNA5SP283	RNA, 5S ribosomal pseudogene 283	no	no	.	2.960	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BPTF_LS0038	chr17:67914565|67918714:+	BPTF	bromodomain PHD finger transcription factor	protein coding gene	no	.	2.719	0.553	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_TUSC1_UP_LS0019	chr9:26426589|26440237:-	TUSC1	tumor suppressor candidate 1	protein coding gene	yes	.	0.965	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
PDE4DIP_LS068	chr1:149021153|149024445:+	PDE4DIP	phosphodiesterase 4D interacting protein	protein coding gene	no	ENST00000524974.5;ENST00000585156.5;ENST00000618462.4;ENST00000369356.8;ENST00000369354.7;ENST00000481227.6	1.181	1.847	1.177	0.78(7474)	0.868(609)	0.389(6765)	non tumor-specific	nAS	yes
ANP32E_LS003	chr1:150220761|150223186:-	ANP32E	acidic nuclear phosphoprotein 32 family member E	protein coding gene	no	ENST00000583931.5;ENST00000629042.2;ENST00000616917.4;ENST00000436748.6;ENST00000534437.1;ENST00000369115.3	73.746	33.681	32.675	0.996(9542)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNF157_LS0049	chr17:76156505|76158393:-	RNF157	ring finger protein 157	protein coding gene	no	.	2.557	0.052	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_HERC3_LS0013	chr4:88664212|88665855:+	HERC3	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein coding gene	no	.	3.165	0.499	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AF064858.3_LS002	chr21:39008231|39011088:-	AF064858.3	-	lncRNA gene	no	ENST00000419664.1	0.324	0.097	0.704	0.004(35)	0.006(4)	0.025(443)	non tumor-specific	nAS	yes
RAB27B_LS014	chr18:54893056|54893148:+	RAB27B	RAB27B, member RAS oncogene family	protein coding gene	no	ENST00000592334.1	0.525	0.148	0.773	0.209(1999)	0.283(199)	0.118(2046)	non tumor-specific	intron_retention	yes
FOLH1_LS006	chr11:49153927|49154228:-	FOLH1	folate hydrolase 1	protein coding gene	no	ENST00000458311.6;ENST00000256999.6;ENST00000356696.7;ENST00000525826.5;ENST00000340334.11;ENST00000533034.1	33.185	13.789	4.354	0.76(7279)	0.756(531)	0.762(13253)	non tumor-specific	alt_3prime	yes
UN_GALT_LS0004	chr9:34641398|34646677:+	GALT	galactose-1-phosphate uridylyltransferase	protein coding gene	no	.	0.855	1.266	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
KRBA1_LS013	chr7:149720990|149721380:+	KRBA1	KRAB-A domain containing 1	protein coding gene	no	ENST00000319551.12;ENST00000485033.6	1.305	1.107	4.637	0.702(6729)	0.685(481)	0.948(16484)	non tumor-specific	alt_3prime;exon_skip	yes
DSC3_LS004	chr18:30997048|31001618:-	DSC3	desmocollin 3	protein coding gene	yes	ENST00000360428.8;ENST00000434452.5;ENST00000584980.1	48.172	28.080	2.562	0.367(3516)	0.348(244)	0.426(7410)	non tumor-specific	nAS	yes
VWA5A_LS014	chr11:124118411|124118533:+	VWA5A	von Willebrand factor A domain containing 5A	protein coding gene	yes	ENST00000456829.6;ENST00000361352.9;ENST00000449321.5;ENST00000392748.5;ENST00000392744.4	24.150	30.571	18.719	0.938(8991)	0.99(695)	0.968(16824)	non tumor-specific	nAS	yes
UN_FRMD3_LS0047	chr9:83311975|83312595:-	FRMD3	FERM domain containing 3	protein coding gene	no	.	1.164	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HSD17B6_LS0005	chr12:56752581|56773834:+	HSD17B6	hydroxysteroid 17-beta dehydrogenase 6	protein coding gene	no	.	1.505	0.042	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
FXYD5_LS017	chr19:35158400|35159516:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	ENST00000392218.6	0.016	0.015	0.657	0.134(1281)	0.095(67)	0.048(838)	non tumor-specific	nAS	yes
CENPK_LS010	chr5:65541436|65542802:-	CENPK	centromere protein K	protein coding gene	no	ENST00000510768.5	0.025	0.010	0.607	0.132(1265)	0.017(12)	0.033(568)	non tumor-specific	exon_skip	yes
NIPAL3_LS025	chr1:24464120|24466004:+	NIPAL3	NIPA like domain containing 3	protein coding gene	no	ENST00000339255.2;ENST00000339255.2	9.833	4.516	3.016	0.847(8112)	0.873(613)	0.808(14039)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
INTS8_LS041	chr8:94872002|94873374:+	INTS8	integrator complex subunit 8	protein coding gene	yes	ENST00000524333.5;ENST00000523731.5;ENST00000343161.8;ENST00000523206.5;ENST00000520526.5;ENST00000519736.5;ENST00000521155.5;ENST00000523352.1	27.330	10.329	42.499	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PPP4C_LS0021	chr16:30083759|30085116:-	PPP4C	protein phosphatase 4 catalytic subunit	protein coding gene	no	.	1.361	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP5C_LS0004	chr19:46350950|46353748:+	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	.	2.503	0.399	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_OSBPL9_LS0040	chr1:51781709|51782559:+	OSBPL9	oxysterol binding protein like 9	protein coding gene	no	.	1.257	0.506	0.000	0.009(87)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RCN1P2_UP_LS0004	chr13:45411938|45433864:-	RCN1P2	reticulocalbin 1 pseudogene 2	pseudogene	no	.	3.737	2.137	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDK14_LS015	chr7:90709610|90709816:+	CDK14	cyclin dependent kinase 14	protein coding gene	yes	ENST00000496279.5	0.070	0.005	0.762	0.014(131)	0.009(6)	0.027(475)	non tumor-specific	exon_skip;intron_retention	yes
HMOX2_LS003	chr16:4474847|4505484:+	HMOX2	heme oxygenase 2	protein coding gene	no	ENST00000575051.5;ENST00000406590.6;ENST00000575051.5;ENST00000406590.6	0.101	0.097	0.748	0.495(4743)	0.333(234)	0.158(2753)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ADAMTS7P1_LS004	chr15:82304404|82305733:+	ADAMTS7P1	ADAMTS7 pseudogene 1	pseudogene	no	ENST00000614978.4	0.325	0.000	0.775	0.002(16)	0(0)	0.016(278)	non tumor-specific	nAS	yes
UN_HVCN1_LS0023	chr12:110661448|110677548:-	HVCN1	hydrogen voltage gated channel 1	protein coding gene	no	.	1.165	0.144	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL390729.2_UP_LS0002	chr1:112891892|112895893:-	AL390729.2	-	pseudogene	no	.	4.198	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL449403.2_UP_LS0006	chr9:96182761|96183799:-	AL449403.2	-	lncRNA gene	no	.	2.215	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SNHG20_LS008	chr17:77089271|77094070:+	SNHG20	small nucleolar RNA host gene 20	lncRNA gene	no	ENST00000565256.1	0.142	0.098	0.690	0.412(3950)	0.386(271)	0.006(110)	non tumor-specific	nAS	yes
MUSK_LS001	chr9:110668983|110682674:+	MUSK	muscle associated receptor tyrosine kinase	protein coding gene	no	ENST00000374448.8;ENST00000416899.7;ENST00000189978.10;ENST00000374440.7	1.502	0.952	1.415	0.013(126)	0.098(69)	0.238(4131)	non tumor-specific	nAS	yes
WDR93_LS007	chr15:89716949|89722055:+	WDR93	WD repeat domain 93	protein coding gene	no	ENST00000268130.11;ENST00000560294.5	1.808	1.538	0.905	0.09(859)	0.172(121)	0.215(3740)	non tumor-specific	nAS	yes
ZNF19_LS002	chr16:71476272|71478228:-	ZNF19	zinc finger protein 19	protein coding gene	no	ENST00000288177.9;ENST00000565637.5;ENST00000565100.6;ENST00000569717.5;ENST00000564230.5;ENST00000565541.5;ENST00000568815.5	3.327	2.082	3.153	0.714(6845)	0.811(569)	0.898(15603)	non tumor-specific	nAS	yes
UN_CAPN1_LS0149	chr11:65211510|65211644:-	CAPN1	calpain 1	protein coding gene	no	.	6.671	3.069	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RASEF_LS0001	chr9:82982777|82990391:-	RASEF	RAS and EF-hand domain containing	protein coding gene	no	.	6.638	0.260	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
LRP4_LS038	chr11:46896018|46896210:-	LRP4	LDL receptor related protein 4	protein coding gene	no	ENST00000378623.5	9.487	4.652	3.073	0.53(5075)	0.651(457)	0.787(13686)	non tumor-specific	nAS	yes
RAB40B_LS020	chr17:82664556|82698472:-	RAB40B	RAB40B, member RAS oncogene family	protein coding gene	no	.;.	1.751	0.249	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HIC2_LS0002	chr22:21420761|21444922:+	HIC2	HIC ZBTB transcriptional repressor 2	protein coding gene	no	.	0.912	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
PLXNB2_LS052	chr22:50286287|50287111:-	PLXNB2	plexin B2	protein coding gene	no	ENST00000359337.8;ENST00000449103.5;ENST00000359337.8;ENST00000449103.5	76.357	60.359	62.636	0.873(8364)	0.892(626)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FAM30B_UP_LS0005	chr15:19972239|19986634:+	FAM30B	family with sequence similarity 30 member B	pseudogene	no	.	3.836	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC022031.2_LS0028	chr18:55781999|55784899:+	AC022031.2	-	lncRNA gene	no	.	1.397	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DVL2_LS0004	chr17:7225782|7225958:+	DVL2	dishevelled segment polarity protein 2	protein coding gene	no	.	2.034	0.219	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCRN3_LS022	chr2:174396293|174398366:+	SCRN3	secernin 3	protein coding gene	no	.;.	0.618	0.414	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL732372.2_LS008	chr1:485208|494992:-	AL732372.2	-	pseudogene	no	ENST00000601814.5	0.041	0.026	0.665	0.375(3593)	0.338(237)	0.019(332)	non tumor-specific	nAS	yes
AC073332.1_LS001	chr7:17144788|17150120:-	AC073332.1	-	lncRNA gene	no	ENST00000646331.1	2.106	0.573	0.000	0.027(258)	0.007(5)	0(0)	non tumor-specific	nAS	yes
UN_WNK2_LS0018	chr9:93253043|93256334:-	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	.	1.144	0.810	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SYNPO_LS001	chr5:150601188|150618103:+	SYNPO	synaptopodin	protein coding gene	no	ENST00000394243.5	1.429	0.375	0.985	0.429(4112)	0.528(371)	0.312(5417)	non tumor-specific	exon_skip	yes
AC099489.1_LS070	chr16:11516307|11518900:-	AC099489.1	-	protein coding gene	no	ENST00000598234.6	1.453	0.000	0.812	0.001(11)	0(0)	0.18(3126)	non tumor-specific	nAS	yes
DAB1-AS1_LS015	chr1:57875188|57876731:+	DAB1-AS1	DAB1 antisense RNA 1	lncRNA gene	no	ENST00000608580.5	0.142	0.000	0.613	0.001(5)	0(0)	0.001(13)	non tumor-specific	nAS	yes
AC010096.1_LS001	chr2:19459320|19468354:-	AC010096.1	-	lncRNA gene	no	ENST00000443897.1	0.036	0.002	0.585	0.003(30)	0.006(4)	0.001(17)	non tumor-specific	nAS	yes
ADAMTS7P4_LS018	chr15:85319995|85330078:-	ADAMTS7P4	ADAMTS7 pseudogene 4	pseudogene	no	ENST00000558365.1	0.579	0.207	0.828	0.195(1867)	0.204(143)	0.186(3228)	non tumor-specific	nAS	yes
MORF4L1_LS009	chr15:78873839|78878213:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	ENST00000559690.5	0.006	0.005	0.669	0.2(1918)	0.175(123)	0.107(1868)	non tumor-specific	alt_5prime	yes
AC104389.4_LS012	chr11:5595350|5624826:-	AC104389.4	-	protein coding gene	no	ENST00000394793.3	1.068	0.109	0.706	0.006(57)	0.006(4)	0.102(1780)	non tumor-specific	exon_skip	yes
FER1L6_LS001	chr8:123852185|123955992:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	0.509	1.017	0.727	0.001(11)	0.067(47)	0.001(25)	non tumor-specific	nAS	yes
POLR3H_LS009	chr22:41532157|41540699:-	POLR3H	RNA polymerase III subunit H	protein coding gene	no	ENST00000337566.9;ENST00000337566.9	0.393	0.422	0.952	0.86(8240)	0.876(615)	0.464(8057)	non tumor-specific	alt_3prime;exon_skip	yes
BTD_LS017	chr3:15631495|15635424:+	BTD	biotinidase	protein coding gene	no	ENST00000437172.5	0.222	0.015	0.602	0.003(32)	0.001(1)	0.017(296)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CREG1_UP_LS0005	chr1:167617833|167629538:-	CREG1	cellular repressor of E1A stimulated genes 1	protein coding gene	no	.	2.394	0.075	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02354_LS003	chr12:47831453|47832154:+	LINC02354	long intergenic non-protein coding RNA 2354	lncRNA gene	no	ENST00000550720.5	0.475	0.000	0.569	0.001(9)	0(0)	0.001(23)	non tumor-specific	nAS	yes
CAPN3_LS013	chr15:42402135|42402794:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000357568.7;ENST00000349748.7;ENST00000397163.7;ENST00000638141.1	0.507	0.582	3.129	0.443(4246)	0.611(429)	0.916(15927)	non tumor-specific	alt_5prime	yes
AF228730.5_LS002	chr8:7109616|7112356:+	AF228730.5	-	pseudogene	no	ENST00000641436.1;ENST00000649959.1	3.242	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_PHACTR1_LS0051	chr6:13267835|13272590:-	PHACTR1	phosphatase and actin regulator 1	protein coding gene	no	.	1.084	0.163	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
SPEF1_LS001	chr20:3778319|3778421:-	SPEF1	sperm flagellar 1	protein coding gene	no	ENST00000471499.5;ENST00000463490.1;ENST00000379756.3	3.993	3.151	1.894	0.412(3950)	0.476(334)	0.423(7347)	non tumor-specific	intron_retention	yes
UN_AC012184.2_LS0037	chr16:70330004|70366799:+	AC012184.2	-	protein coding gene	no	.	13.520	1.396	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC00298_LS0012	chr2:8055024|8060348:-	LINC00298	long intergenic non-protein coding RNA 298	lncRNA gene	no	.	1.013	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU2-53P_UP_LS0012	chr15:53129389|53193628:+	RNU2-53P	RNA, U2 small nuclear 53, pseudogene	small non-coding RNA gene	no	.	2.569	1.129	0.000	0.009(82)	0.017(12)	0(0)	non tumor-specific	nAS	no
TTN_LS367	chr2:178789497|178789978:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5;ENST00000360870.9	5.895	23.424	11.995	0.007(66)	0.026(18)	0.116(2023)	non tumor-specific	exon_skip	yes
DNAH14_LS033	chr1:225082739|225085544:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000430092.5;ENST00000439375.6	4.232	0.122	0.836	0.01(94)	0.001(1)	0.223(3878)	non tumor-specific	alt_3prime	yes
UN_PYGL_LS0007	chr14:50912303|50914701:-	PYGL	glycogen phosphorylase L	protein coding gene	no	.	3.084	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
SMIM8_LS013	chr6:87391835|87392725:+	SMIM8	small integral membrane protein 8	protein coding gene	no	ENST00000369572.3	0.764	0.434	0.797	0.053(511)	0.06(42)	0.289(5017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_TUBA1C_UP_LS0127	chr12:49129573|49186685:+	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	101.894	7.642	0.000	0.04(381)	0.013(9)	0(0)	non tumor-specific	nAS	no
MRPL30_LS008	chr2:99195189|99195573:+	MRPL30	mitochondrial ribosomal protein L30	protein coding gene	no	ENST00000338148.7;ENST00000465432.1;ENST00000409841.1	52.143	24.839	34.895	0.996(9547)	0.993(697)	0.979(17019)	non tumor-specific	nAS	yes
UN_RGL2_LS0027	chr6:33294762|33294996:-	RGL2	ral guanine nucleotide dissociation stimulator like 2	protein coding gene	no	.	5.593	0.993	0.000	0.03(289)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
MAPKAPK5_LS026	chr12:111889000|111890040:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	ENST00000550735.6	40.870	20.816	36.206	0.991(9492)	0.989(694)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRPC7_LS005	chr5:136231549|136247471:-	TRPC7	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	ENST00000513104.5;ENST00000514963.5;ENST00000378459.7;ENST00000503275.6;ENST00000502753.4;ENST00000352189.8	5.032	0.000	1.074	0.01(100)	0(0)	0.05(861)	non tumor-specific	nAS	yes
UN_WDR70_LS0004	chr5:37392120|37393542:+	WDR70	WD repeat domain 70	protein coding gene	no	.	10.445	0.593	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPGRIP1_LS014	chr14:21321300|21321854:+	RPGRIP1	RPGR interacting protein 1	protein coding gene	no	ENST00000553500.5	0.239	0.000	0.686	0.001(14)	0(0)	0.031(538)	non tumor-specific	nAS	yes
DPY19L2_LS013	chr12:63597910|63600306:-	DPY19L2	dpy-19 like 2	protein coding gene	no	ENST00000324472.8;ENST00000439061.6;ENST00000306389.7;ENST00000541083.1	1.926	1.420	2.920	0.283(2711)	0.486(341)	0.717(12463)	non tumor-specific	exon_skip	yes
LINC02289_LS001	chr14:77070846|77071710:-	LINC02289	long intergenic non-protein coding RNA 2289	lncRNA gene	no	ENST00000557526.1	0.753	0.016	0.693	0.001(6)	0.001(1)	0.029(507)	non tumor-specific	nAS	yes
EFCAB13_LS001	chr17:47323541|47328269:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000518170.1	0.436	0.116	0.775	0.111(1060)	0.14(98)	0.078(1354)	non tumor-specific	nAS	yes
LINC02529_LS001	chr6:159383777|159393209:+	LINC02529	long intergenic non-protein coding RNA 2529	lncRNA gene	no	ENST00000649001.1;ENST00000429657.1	0.080	0.000	0.651	0.001(8)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_NOL9_LS0035	chr1:6523342|6525104:+	NOL9	nucleolar protein 9	protein coding gene	no	.	0.864	0.382	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC008763.2_LS008	chr19:7632049|7638726:+	AC008763.2	-	protein coding gene	no	ENST00000599243.5	0.081	0.052	0.663	0.007(68)	0.003(2)	0.044(770)	non tumor-specific	nAS	yes
SH3GL2_LS005	chr9:17786524|17787380:+	SH3GL2	SH3 domain containing GRB2 like 2, endophilin A1	protein coding gene	no	ENST00000380607.4	11.290	23.730	3.189	0.249(2382)	0.519(364)	0.462(8036)	non tumor-specific	exon_skip	yes
NEDD4L_LS042	chr18:58335537|58341038:+	NEDD4L	NEDD4 like E3 ubiquitin protein ligase	protein coding gene	yes	ENST00000400345.7;ENST00000456986.5;ENST00000357895.9;ENST00000431212.6;ENST00000635997.1	24.265	32.176	3.229	0.856(8200)	0.936(657)	0.527(9154)	non tumor-specific	exon_skip	yes
RPS6KB1_LS027	chr17:59935300|59936215:+	RPS6KB1	ribosomal protein S6 kinase B1	protein coding gene	no	ENST00000393021.7;ENST00000472940.5;ENST00000443572.6;ENST00000406116.7;ENST00000225577.8	26.595	16.042	20.612	0.976(9349)	0.993(697)	0.978(17002)	non tumor-specific	alt_3prime;exon_skip	yes
NRN1_LS004	chr6:6002497|6003703:-	NRN1	neuritin 1	protein coding gene	no	.;.	2.828	1.194	0.000	0.094(899)	0.051(36)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PSPH_LS032	chr7:56034154|56051138:-	PSPH	phosphoserine phosphatase	protein coding gene	no	ENST00000395471.7;ENST00000419984.6;ENST00000395471.7;ENST00000419984.6	8.227	3.928	3.442	0.955(9151)	0.977(686)	0.908(15775)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PTPRA_LS0021	chr20:2905446|2923207:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	1.646	0.487	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PPARGC1A_UP_LS0007	chr4:24323443|24327939:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	.	7.913	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CATIP-AS2_LS0005	chr2:218347881|218351160:-	CATIP-AS2	CATIP antisense RNA 2	lncRNA gene	no	.	3.258	0.817	0.000	0.008(74)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_KIAA0930_LS0035	chr22:45197216|45197538:-	KIAA0930	KIAA0930	protein coding gene	no	.	5.268	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DMKN_LS066	chr19:35508240|35509911:-	DMKN	dermokine	protein coding gene	no	ENST00000434389.5;ENST00000467637.5;ENST00000419602.5;ENST00000443640.5;ENST00000498211.5;ENST00000483855.5;ENST00000493979.5;ENST00000464709.6;ENST00000464894.5;ENST00000462538.5;ENST00000447113.6;ENST00000458071.5;ENST00000424570.6	1.656	1.965	5.408	0.79(7568)	0.906(636)	0.874(15184)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SLC35B3_LS0014	chr6:8425200|8427937:-	SLC35B3	solute carrier family 35 member B3	protein coding gene	no	.	17.952	2.929	0.000	0.019(182)	0.016(11)	0(0)	non tumor-specific	alt_3prime	no
UN_CCDC30_LS0007	chr1:42463898|42473122:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	.	2.570	0.986	0.000	0.057(543)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_ZNF236_LS0059	chr18:76967678|76967717:+	ZNF236	zinc finger protein 236	protein coding gene	no	.	10.859	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DAP3_LS025	chr1:155731415|155736946:+	DAP3	DLG associated protein 3	protein coding gene	no	ENST00000490249.5	0.031	0.027	1.238	0.465(4455)	0.571(401)	0.71(12348)	non tumor-specific	exon_skip	yes
CDK5_LS009	chr7:151056636|151056736:-	CDK5	cyclin dependent kinase 5	protein coding gene	no	ENST00000485972.5;ENST00000297518.4;ENST00000487703.5	59.273	25.867	19.538	0.996(9539)	0.997(700)	0.979(17011)	non tumor-specific	exon_skip	yes
HCG25_LS005	chr6:33250711|33251578:+	HCG25	HLA complex group 25	lncRNA gene	no	ENST00000427196.1	0.029	0.035	0.673	0.299(2864)	0.245(172)	0.068(1188)	non tumor-specific	nAS	yes
MYBL2_LS003	chr20:43673899|43682794:+	MYBL2	MYB proto-oncogene like 2	protein coding gene	no	ENST00000396863.8	0.997	0.870	0.839	0.469(4497)	0.144(101)	0.074(1289)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NSUN7_LS0028	chr4:40799228|40800131:+	NSUN7	NOP2/Sun RNA methyltransferase family member 7	protein coding gene	no	.	1.592	0.218	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM63B_LS0041	chr6:44153977|44155201:-	TMEM63B	transmembrane protein 63B	protein coding gene	no	.	2.145	2.251	0.000	0.007(69)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_ZNF652_LS0004	chr17:49293653|49298106:-	ZNF652	zinc finger protein 652	protein coding gene	no	.	1.114	0.064	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CLNK_LS010	chr4:10528094|10532256:-	CLNK	cytokine dependent hematopoietic cell linker	protein coding gene	no	ENST00000226951.10;ENST00000442825.6	7.376	0.994	0.830	0.027(257)	0.165(116)	0.076(1314)	non tumor-specific	alt_3prime;exon_skip	yes
SPATA3_LS011	chr2:231004118|231012590:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000452881.5	1.198	0.000	0.722	0(1)	0(0)	0.003(48)	non tumor-specific	exon_skip	yes
UN_TFR2_LS0022	chr7:100631052|100631714:-	TFR2	transferrin receptor 2	protein coding gene	no	.	3.862	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_HERC2P9_LS0073	chr15:28682102|28684129:+	HERC2P9	hect domain and RLD 2 pseudogene 9	pseudogene	no	.	4.894	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNKSR3_LS0034	chr6:154450258|154477927:-	CNKSR3	CNKSR family member 3	protein coding gene	no	.	3.158	0.505	0.000	0.052(494)	0.036(25)	0(0)	non tumor-specific	nAS	no
UN_HLA-DRB6_UP_LS0004	chr6:32584283|32664883:-	HLA-DRB6	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudogene	no	.	23.246	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
STRA8_LS007	chr7:135251869|135255114:+	STRA8	stimulated by retinoic acid 8	protein coding gene	no	ENST00000275764.3	22.575	0.350	1.057	0.036(341)	0.004(3)	0.12(2083)	non tumor-specific	alt_3prime;exon_skip	yes
ATXN1_LS001	chr6:16306859|16326394:-	ATXN1	ataxin 1	protein coding gene	no	ENST00000244769.8;ENST00000436367.5	7.216	6.450	8.603	0.915(8766)	0.976(685)	0.972(16892)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CELSR1_LS0147	chr22:46466599|46466878:+	CELSR1	cadherin EGF LAG seven-pass G-type receptor 1	protein coding gene	no	.	2.285	0.675	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC242852.1_UP_LS0007	chr1:121572983|121596565:+	AC242852.1	-	pseudogene	no	.	1.324	0.032	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ASAP1_LS0021	chr8:130115735|130115818:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	1.772	0.274	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
SIRT5_LS016	chr6:13588464|13591669:+	SIRT5	sirtuin 5	protein coding gene	no	ENST00000359782.8;ENST00000379262.8;ENST00000606117.1	29.379	20.689	17.180	0.984(9423)	0.99(695)	0.979(17011)	non tumor-specific	exon_skip	yes
ACADVL_LS037	chr17:7223875|7223968:+	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	ENST00000543245.6;ENST00000356839.9;ENST00000322910.9;ENST00000350303.9;ENST00000583858.5;ENST00000542255.6;ENST00000579546.1;ENST00000583850.5;ENST00000583074.5	287.200	258.564	797.603	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_BBOX1-AS1_LS0001	chr11:27063060|27151050:-	BBOX1-AS1	BBOX1 antisense RNA 1	lncRNA gene	no	.	1.642	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
KLHDC4_LS025	chr16:87748809|87750237:-	KLHDC4	kelch domain containing 4	protein coding gene	no	ENST00000316853.10	0.297	0.162	0.692	0.007(64)	0.006(4)	0.036(618)	non tumor-specific	exon_skip	yes
UN_DDX58_LS0029	chr9:32493942|32498312:-	DDX58	DExD/H-box helicase 58	protein coding gene	yes	.	1.081	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	exon_skip	no
SYNPO_LS007	chr5:150650303|150656404:+	SYNPO	synaptopodin	protein coding gene	no	ENST00000307662.4	46.606	64.414	29.200	0.952(9118)	0.996(699)	0.944(16416)	non tumor-specific	alt_5prime;exon_skip	yes
SP100_LS050	chr2:230541372|230541892:+	SP100	SP100 nuclear antigen	protein coding gene	yes	ENST00000340126.8;ENST00000431952.1;ENST00000494901.5;ENST00000488180.1	7.479	4.607	11.722	0.948(9083)	0.984(691)	0.952(16539)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C20orf96_LS0013	chr20:278429|278611:-	C20orf96	chromosome 20 open reading frame 96	protein coding gene	no	.	2.929	0.084	0.000	0.006(57)	0.001(1)	0(0)	non tumor-specific	nAS	no
CFAP46_LS010	chr10:132814612|132814686:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	ENST00000368586.9	5.597	3.086	7.119	0.038(364)	0.148(104)	0.343(5958)	non tumor-specific	nAS	yes
UN_LINC01348_LS0009	chr1:235068159|235068296:-	LINC01348	long intergenic non-protein coding RNA 1348	lncRNA gene	no	.	3.115	0.660	0.000	0.008(73)	0.03(21)	0(0)	non tumor-specific	nAS	no
CCT7_LS009	chr2:73234384|73242973:+	CCT7	chaperonin containing TCP1 subunit 7	protein coding gene	no	ENST00000473786.5	0.186	0.027	0.641	0.025(236)	0.023(16)	0.01(176)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TRPS1_UP_LS0009	chr8:115818823|115818957:-	TRPS1	transcriptional repressor GATA binding 1	protein coding gene	no	.	13.334	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CST5_LS001	chr20:23876271|23877505:-	CST5	cystatin D	protein coding gene	yes	ENST00000304710.4	2.503	2.306	1.644	0.216(2073)	0.38(267)	0.132(2301)	non tumor-specific	nAS	yes
ZNF620_LS004	chr3:40506376|40508656:+	ZNF620	zinc finger protein 620	protein coding gene	no	ENST00000433723.2	0.331	0.141	0.709	0.158(1518)	0.209(147)	0.177(3078)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TAF15_LS0248	chr17:35844770|35844858:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	13.151	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
LCT_LS002	chr2:135789798|135790658:-	LCT	lactase	protein coding gene	no	ENST00000264162.6	8.631	1.853	0.880	0.04(386)	0.023(16)	0.06(1043)	non tumor-specific	nAS	yes
STXBP5L_LS023	chr3:121282337|121318475:+	STXBP5L	syntaxin binding protein 5 like	protein coding gene	no	ENST00000273666.10;ENST00000497029.5;ENST00000492541.5;ENST00000471262.1	1.123	0.415	2.275	0.014(131)	0.007(5)	0.087(1512)	non tumor-specific	exon_skip	yes
ALDH3A2_LS036	chr17:19673275|19675562:+	ALDH3A2	aldehyde dehydrogenase 3 family member A2	protein coding gene	no	.;.;.	8.406	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
MIR2052HG_LS013	chr8:74758150|74768036:+	MIR2052HG	MIR2052 host gene	lncRNA gene	no	ENST00000521762.1	1.499	0.176	0.722	0.048(462)	0.02(14)	0.018(307)	non tumor-specific	exon_skip	yes
DNAH17_LS029	chr17:78451673|78453343:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000591369.5;ENST00000585328.5;ENST00000389840.6;ENST00000586052.5;ENST00000592152.1	2.216	1.067	1.804	0.186(1779)	0.17(119)	0.271(4704)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL355490.1_LS0001	chr10:97334971|97338075:+	AL355490.1	-	no	no	.	0.913	0.064	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
RPL23A_LS007	chr17:28720328|28720414:+	RPL23A	ribosomal protein L23a	protein coding gene	no	ENST00000394935.7	0.522	0.044	0.490	0.063(602)	0.006(4)	0.009(152)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC022613.1_LS0004	chr15:29676015|29677176:+	AC022613.1	-	lncRNA gene	no	.	2.501	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2J1_LS008	chr6:89343756|89352539:-	UBE2J1	ubiquitin conjugating enzyme E2 J1	protein coding gene	no	ENST00000435041.2	19.200	14.658	28.019	0.96(9196)	0.98(688)	0.979(17015)	non tumor-specific	alt_5prime;exon_skip	yes
YIF1A_LS010	chr11:66285536|66287598:-	YIF1A	Yip1 interacting factor homolog A, membrane trafficking protein	protein coding gene	no	ENST00000528575.1;ENST00000528575.1	0.483	0.570	1.367	0.567(5429)	0.598(420)	0.642(11158)	non tumor-specific	alt_3prime;exon_skip	yes
TBC1D19_LS007	chr4:26585184|26613169:+	TBC1D19	TBC1 domain family member 19	protein coding gene	no	ENST00000513596.1	0.001	0.000	0.641	0.134(1283)	0.175(123)	0.004(69)	non tumor-specific	nAS	yes
UN_ZNF7_LS0015	chr8:144831999|144837391:+	ZNF7	zinc finger protein 7	protein coding gene	no	.	2.788	0.247	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
JAZF1-AS1_LS001	chr7:28180539|28185670:+	JAZF1-AS1	JAZF1 antisense RNA 1	lncRNA gene	no	ENST00000455963.5;ENST00000436758.1	0.931	0.446	1.541	0.107(1021)	0.134(94)	0.612(10639)	non tumor-specific	nAS	yes
UN_WDR4_LS0039	chr21:42848514|42848546:-	WDR4	WD repeat domain 4	protein coding gene	no	.	7.633	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLCN7_LS0088	chr16:1456206|1456764:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	.	5.711	0.887	0.000	0.068(649)	0.031(22)	0(0)	non tumor-specific	exon_skip	no
COL6A6_LS035	chr3:130645002|130658676:+	COL6A6	collagen type VI alpha 6 chain	protein coding gene	no	ENST00000506143.5	1.256	0.315	0.963	0.001(10)	0.003(2)	0.092(1600)	non tumor-specific	exon_skip	yes
RFPL2_LS008	chr22:32194490|32202333:-	RFPL2	ret finger protein like 2	protein coding gene	no	ENST00000248983.8;ENST00000400237.2	0.151	0.015	1.089	0.04(383)	0.046(32)	0.051(893)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HS1BP3_LS0012	chr2:20596585|20597352:+	HS1BP3	HCLS1 binding protein 3	protein coding gene	no	.	4.019	1.046	0.000	0.021(203)	0.027(19)	0(0)	non tumor-specific	nAS	no
SUPT16H_LS016	chr14:21363503|21364827:-	SUPT16H	SPT16 homolog, facilitates chromatin remodeling subunit	protein coding gene	no	ENST00000216297.6	71.894	40.398	38.959	0.975(9346)	0.993(697)	0.979(17014)	non tumor-specific	alt_5prime	yes
UN_SSRP1_LS0030	chr11:57333149|57333438:-	SSRP1	structure specific recognition protein 1	protein coding gene	no	.	41.301	1.989	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
NME4_LS024	chr16:399480|399627:+	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	ENST00000397722.5;ENST00000620944.4;ENST00000448828.5;ENST00000444498.5;ENST00000460297.1;ENST00000382940.8;ENST00000219479.6;ENST00000433358.5;ENST00000450036.1	323.176	165.075	156.127	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
DNAH7_LS017	chr2:195816963|195817696:-	DNAH7	dynein axonemal heavy chain 7	protein coding gene	no	ENST00000312428.10	2.635	2.077	1.440	0.182(1743)	0.345(242)	0.393(6839)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KHSRP_LS0140	chr19:6424542|6424683:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	.	1.837	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
AL139383.1_LS005	chr13:33511407|33519958:-	AL139383.1	-	lncRNA gene	no	ENST00000437698.1	0.160	0.000	0.709	0.001(8)	0(0)	0.002(31)	non tumor-specific	nAS	yes
FXYD3_LS016	chr19:35118599|35119363:+	FXYD3	FXYD domain containing ion transport regulator 3	protein coding gene	no	ENST00000604621.5;ENST00000604621.5;ENST00000604621.5	1.253	3.485	2.712	0.491(4708)	0.621(436)	0.369(6416)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DNAJC14_LS003	chr12:55822732|55823070:-	DNAJC14	DnaJ heat shock protein family (Hsp40) member C14	protein coding gene	no	ENST00000317269.7;ENST00000357606.7;ENST00000317287.5;ENST00000646577.1	85.452	46.753	36.627	0.988(9466)	0.996(699)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_SCAMP2_LS0014	chr15:74844097|74844255:+	SCAMP2	secretory carrier membrane protein 2	protein coding gene	no	.	2.688	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
GRIPAP1_LS006	chrX:48978435|48981215:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	ENST00000619149.4;ENST00000593475.5;ENST00000622599.4;ENST00000376423.8;ENST00000619107.1;ENST00000473581.5;ENST00000611757.4	68.958	37.730	62.330	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
MYO18A_LS067	chr17:29125967|29127852:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000533420.3	0.311	0.500	2.507	0.083(792)	0.162(114)	0.68(11827)	non tumor-specific	exon_skip	yes
UN_MGAT1_UP_LS0012	chr5:180828474|180829937:-	MGAT1	monoacylglycerol O-acyltransferase 1	protein coding gene	no	.	2.191	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRIM28_LS0071	chr19:58548374|58549390:-	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	1.764	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SLC25A14_LS006	chrX:130340353|130345182:+	SLC25A14	solute carrier family 25 member 14	protein coding gene	no	ENST00000545805.5;ENST00000424447.5;ENST00000218197.9;ENST00000467496.5	0.843	0.738	1.670	0.629(6030)	0.605(425)	0.732(12717)	non tumor-specific	alt_5prime;exon_skip	yes
ANKFN1_LS023	chr17:56372840|56374601:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000635860.1;ENST00000318698.6;ENST00000566473.6	3.237	1.566	1.113	0.102(982)	0.068(48)	0.316(5500)	non tumor-specific	nAS	yes
UN_NPIPB2_LS0017	chr16:11942114|11956144:-	NPIPB2	nuclear pore complex interacting protein family member B2	protein coding gene	no	.	0.760	0.050	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PATL2_LS008	chr15:44668482|44668980:-	PATL2	PAT1 homolog 2	protein coding gene	no	ENST00000560775.5;ENST00000434130.5;ENST00000560780.1	1.966	1.129	1.152	0.198(1895)	0.115(81)	0.436(7573)	non tumor-specific	intron_retention	yes
UN_MTMR12_LS0023	chr5:32239168|32242057:-	MTMR12	myotubularin related protein 12	protein coding gene	no	.	3.605	0.881	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
NXNL2_LS010	chr9:88537797|88544379:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	.;.	2.816	0.277	0.000	0.013(122)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ZNF431_LS013	chr19:21175474|21182623:+	ZNF431	zinc finger protein 431	protein coding gene	no	ENST00000600692.5	0.080	0.075	1.198	0.167(1596)	0.255(179)	0.437(7604)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MAPK8_LS0010	chr10:48410168|48420203:+	MAPK8	mitogen-activated protein kinase 8	protein coding gene	no	.	3.371	0.717	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NDRG4_LS017	chr16:58495008|58499144:+	NDRG4	NDRG family member 4	protein coding gene	yes	ENST00000569578.5;ENST00000421602.6	0.000	0.009	1.225	0.044(421)	0.037(26)	0.054(941)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPP2CB_LS0069	chr8:30812463|30812562:-	PPP2CB	protein phosphatase 2 catalytic subunit beta	protein coding gene	yes	.	1.638	0.860	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL845552.2_LS001	chr14:100539211|100540130:+	AL845552.2	-	lncRNA gene	no	ENST00000553301.1	0.200	0.080	0.852	0.178(1704)	0.168(118)	0.149(2598)	non tumor-specific	nAS	yes
ARFGAP2_LS030	chr11:47173840|47175015:-	ARFGAP2	ADP ribosylation factor GTPase activating protein 2	protein coding gene	no	ENST00000524782.5;ENST00000395449.7;ENST00000525314.5;ENST00000527097.5;ENST00000530596.5	41.554	35.205	59.872	0.991(9492)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AHRR_LS0053	chr5:418904|420029:+	AHRR	aryl-hydrocarbon receptor repressor	protein coding gene	yes	.	6.126	1.133	0.000	0.006(55)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
NWD1_LS017	chr19:16765192|16773126:+	NWD1	NACHT and WD repeat domain containing 1	protein coding gene	no	ENST00000518676.5;ENST00000524140.6;ENST00000549814.5;ENST00000646016.1;ENST00000379808.7;ENST00000438489.6;ENST00000552788.1	2.992	2.121	1.801	0.186(1786)	0.33(232)	0.343(5968)	non tumor-specific	nAS	yes
ZFP1_LS005	chr16:75148662|75152909:+	ZFP1	ZFP1 zinc finger protein	protein coding gene	no	ENST00000393430.6	0.038	0.058	0.680	0.36(3453)	0.426(299)	0.221(3835)	non tumor-specific	alt_5prime	yes
UN_TACC2_LS0016	chr10:122079058|122082647:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	.	1.719	0.351	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
KIRREL1_LS004	chr1:157993728|158084422:+	KIRREL1	kirre like nephrin family adhesion molecule 1	protein coding gene	no	ENST00000368173.7	0.104	0.061	0.609	0.084(802)	0.067(47)	0.054(933)	non tumor-specific	exon_skip	yes
UN_UEVLD_LS0009	chr11:18547024|18558228:-	UEVLD	UEV and lactate/malate dehyrogenase domains	protein coding gene	no	.	3.425	0.114	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NCKAP5_LS0058	chr2:133527185|133559050:-	NCKAP5	NCK associated protein 5	protein coding gene	no	.	1.005	0.206	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BUD23_LS014	chr7:73687095|73690916:+	BUD23	BUD23 rRNA methyltransferase and ribosome maturation factor	protein coding gene	no	ENST00000265758.6;ENST00000441822.5;ENST00000463307.5;ENST00000430270.5;ENST00000423497.5	210.542	99.704	100.129	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CYP2E1_LS010	chr10:133527572|133532124:+	CYP2E1	cytochrome P450 family 2 subfamily E member 1	protein coding gene	no	ENST00000418356.1;ENST00000418356.1	0.272	0.045	0.757	0.051(490)	0.083(58)	0.006(97)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_UBC_LS0807	chr12:124913182|124913574:+	UBC	ubiquitin C	protein coding gene	no	.	77.473	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HK3_LS0011	chr5:176884134|176885812:-	HK3	hook microtubule tethering protein 3	protein coding gene	no	.	2.069	0.093	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NISCH_LS0043	chr3:52487475|52487515:+	NISCH	nischarin	protein coding gene	no	.	22.069	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CELF2_LS0064	chr10:11329097|11332558:+	CELF2	CUGBP Elav-like family member 2	protein coding gene	no	.	7.700	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
DNAJC14_LS006	chr12:55828714|55829141:-	DNAJC14	DnaJ heat shock protein family (Hsp40) member C14	protein coding gene	no	ENST00000546957.1	5.151	3.553	2.653	0.891(8541)	0.899(631)	0.885(15382)	non tumor-specific	alt_5prime	yes
LINC01623_LS002	chr6:28863536|28864318:-	LINC01623	long intergenic non-protein coding RNA 1623	lncRNA gene	no	ENST00000606624.1	0.116	0.031	0.718	0.016(152)	0.014(10)	0.001(20)	non tumor-specific	nAS	yes
UN_PHBP15_UP_LS0001	chr7:74746403|75199701:-	PHBP15	prohibitin pseudogene 15	pseudogene	no	.	0.801	0.220	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TTLL5_LS0022	chr14:75680767|75681545:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	.	1.561	0.397	0.000	0.023(217)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
UN_CCT6P3_LS0021	chr7:65068813|65069661:+	CCT6P3	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudogene	no	.	1.720	0.447	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IQCA1_LS0018	chr2:236337883|236350562:+	IQCA1	IQ motif containing with AAA domain 1	protein coding gene	no	.	0.414	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC44A4_LS0044	chr6:31869249|31869544:-	SLC44A4	solute carrier family 44 member 4	protein coding gene	no	.	32.603	7.309	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SMG1P3_LS0042	chr16:21516631|21519828:-	SMG1P3	SMG1 pseudogene 3	pseudogene	no	.	11.245	1.337	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PPP4R3A_LS0008	chr14:91462873|91465250:-	PPP4R3A	protein phosphatase 4 regulatory subunit 3A	protein coding gene	no	.	10.797	1.491	0.000	0.011(106)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RNF38_LS010	chr9:36369932|36375934:-	RNF38	ring finger protein 38	protein coding gene	no	ENST00000259605.10;ENST00000353739.8;ENST00000357058.7;ENST00000350199.8;ENST00000377885.6;ENST00000491349.5;ENST00000484621.1	17.200	13.809	13.700	0.928(8893)	0.97(681)	0.975(16941)	non tumor-specific	exon_skip	yes
FRMD8_LS003	chr11:65387121|65389385:+	FRMD8	FERM domain containing 8	protein coding gene	no	ENST00000526201.1	6.765	2.503	0.844	0.783(7499)	0.728(511)	0.413(7180)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SH2D3A_LS0025	chr19:6760987|6763705:-	SH2D3A	SH2 domain containing 3A	protein coding gene	no	.	4.483	0.347	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TOX4_LS009	chr14:21477592|21487451:+	TOX4	TOX high mobility group box family member 4	protein coding gene	no	ENST00000455138.1	6.519	5.232	0.642	0.466(4467)	0.527(370)	0.042(733)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DENND1A_LS0056	chr9:123652123|123655043:-	DENND1A	DENN domain containing 1A	protein coding gene	no	.	3.522	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BBIP1_LS008	chr10:110901612|110907680:-	BBIP1	BBSome interacting protein 1	protein coding gene	no	ENST00000454061.5	0.197	0.527	1.572	0.811(7767)	0.865(607)	0.746(12967)	non tumor-specific	exon_skip	yes
CAP2_LS013	chr6:17507650|17539336:+	CAP2	serpin family B member 8	protein coding gene	no	ENST00000611958.4	0.089	0.007	0.548	0.002(18)	0.001(1)	0.002(36)	non tumor-specific	nAS	yes
TMEM255A_LS012	chrX:120285215|120287154:-	TMEM255A	transmembrane protein 255A	protein coding gene	no	ENST00000371369.8;ENST00000371369.8;ENST00000371369.8	11.752	2.864	2.115	0.442(4233)	0.654(459)	0.674(11711)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL513479.1_UP_LS0017	chr1:38594240|38596516:-	AL513479.1	-	pseudogene	no	.	2.289	0.156	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
SHANK1_LS012	chr19:50688968|50689197:-	SHANK1	SH3 and multiple ankyrin repeat domains 1	protein coding gene	no	ENST00000391813.5;ENST00000293441.5;ENST00000391814.5;ENST00000359082.3	1.594	3.185	1.816	0.146(1399)	0.038(27)	0.358(6220)	non tumor-specific	alt_3prime	yes
OR2L13_LS002	chr1:248098775|248099358:+	OR2L13	symbol withdrawn, see [HGNC:19578](/data/gene-symbol-report/#!/hgnc_id/HGNC:19578)	protein coding gene	no	ENST00000358120.3;ENST00000641714.1	0.518	0.198	1.759	0.118(1134)	0.132(93)	0.159(2757)	non tumor-specific	nAS	yes
UN_COL5A2_UP_LS0007	chr2:189225332|189337875:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	.	2.264	0.211	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
GTF2IP12_LS013	chr4:119445027|119445312:-	GTF2IP12	general transcription factor IIi pseudogene 12	pseudogene	no	ENST00000634317.1	1.362	0.530	0.728	0.004(35)	0.007(5)	0.259(4494)	non tumor-specific	nAS	yes
UN_MXRA7_LS0043	chr17:76685159|76688113:-	MXRA7	matrix remodeling associated 7	protein coding gene	no	.	15.933	5.012	0.000	0.014(130)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PTPRJ_LS0003	chr11:47981008|48069121:+	PTPRJ	protein tyrosine phosphatase receptor type J	protein coding gene	yes	.	0.891	0.374	0.000	0.061(584)	0.093(65)	0(0)	non tumor-specific	nAS	no
UN_STK11IP_LS0020	chr2:219612584|219613128:+	STK11IP	serine/threonine kinase 11 interacting protein	protein coding gene	no	.	1.978	0.056	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
COL11A2_LS006	chr6:33165816|33165931:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	ENST00000374708.8;ENST00000341947.6;ENST00000361917.5	6.561	1.186	3.427	0.304(2911)	0.14(98)	0.913(15868)	non tumor-specific	alt_3prime	yes
UN_WASH2P_UP_LS0009	chr2:113584136|113588550:+	WASH2P	WASP family homolog 2, pseudogene	pseudogene	no	.	2.927	2.663	0.000	0.867(8304)	0.917(644)	0(0)	non tumor-specific	nAS	no
NLK_LS007	chr17:28163628|28168448:+	NLK	nemo like kinase	protein coding gene	no	ENST00000407008.7;ENST00000496808.1	25.257	22.915	14.120	0.977(9358)	0.996(699)	0.978(16998)	non tumor-specific	exon_skip	yes
UN_AL451069.3_UP_LS0019	chr10:132508929|132511156:-	AL451069.3	-	lncRNA gene	no	.	1.488	0.088	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCOA7_LS0029	chr6:125882501|125885159:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	.	2.567	1.375	0.000	0.018(175)	0.023(16)	0(0)	non tumor-specific	alt_5prime	no
UN_LRRC37A3_UP_LS0011	chr17:64927539|64929914:-	LRRC37A3	leucine rich repeat containing 37 member A3	protein coding gene	no	.	1.425	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
RYR2_LS014	chr1:237445522|237454391:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	2.899	1.998	1.718	0.027(257)	0.118(83)	0.412(7159)	non tumor-specific	nAS	yes
UN_GABRP_LS0051	chr5:170779558|170779726:-	GABRP	gamma-aminobutyric acid type A receptor subunit pi	protein coding gene	no	.	0.770	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MREG_LS0014	chr2:215955684|215996306:-	MREG	melanoregulin	protein coding gene	no	.	2.651	0.629	0.000	0.021(198)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_LRRC4C_LS0021	chr11:41037149|41101824:-	LRRC4C	leucine rich repeat containing 4C	protein coding gene	no	.	2.512	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
DDT_LS001	chr22:23971623|23973105:-	DDT	D-dopachrome tautomerase	protein coding gene	no	ENST00000428792.1	0.283	0.215	1.515	0.855(8188)	0.816(573)	0.744(12938)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
XPO5_LS027	chr6:43558591|43560178:-	XPO5	exportin 5	protein coding gene	yes	ENST00000265351.11	24.269	9.764	12.795	0.917(8789)	0.963(676)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
UN_POM121L14P_UP_LS0027	chr6:57837886|57845540:+	POM121L14P	POM121 transmembrane nucleoporin like 14, pseudogene	pseudogene	no	.	2.757	0.331	0.000	0.007(71)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SIRPA_LS0014	chr20:1895526|1915159:+	SIRPA	signal regulatory protein alpha	protein coding gene	no	.	4.074	1.243	0.000	0.039(376)	0.044(31)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ATF1_LS0005	chr12:50766147|50780140:+	ATF1	glial cell derived neurotrophic factor	protein coding gene	yes	.	6.669	0.562	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NEDD1_LS032	chr12:96943762|96944639:+	NEDD1	NEDD1 gamma-tubulin ring complex targeting factor	protein coding gene	no	ENST00000266742.8;ENST00000429527.6;ENST00000411739.6;ENST00000557644.5;ENST00000457368.2	27.825	14.147	11.166	0.968(9271)	0.98(688)	0.971(16879)	non tumor-specific	alt_3prime	yes
UN_RAB19_LS0008	chr7:140407811|140411874:+	RAB19	RAB19, member RAS oncogene family	protein coding gene	no	.	1.977	0.367	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_TCFL5_LS0026	chr20:62852722|62852815:-	TCFL5	transcription factor like 5	protein coding gene	no	.	5.420	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
USE1_LS005	chr19:17215851|17215992:+	USE1	unconventional SNARE in the ER 1	protein coding gene	no	ENST00000263897.9;ENST00000600970.5;ENST00000595101.5;ENST00000596136.5;ENST00000445667.6;ENST00000593597.1	84.646	45.868	54.270	0.996(9545)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TRIOBP_LS0096	chr22:37751401|37751772:+	TRIOBP	TRIO and F-actin binding protein	protein coding gene	no	.	0.849	0.200	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
FBXO25_LS002	chr8:407066|413073:+	FBXO25	F-box protein 25	protein coding gene	yes	ENST00000350302.7;ENST00000352684.2;ENST00000382824.5	5.617	5.560	12.804	0.975(9340)	0.994(698)	0.975(16945)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HGSNAT_LS0001	chr8:43140614|43146954:+	HGSNAT	heparan-alpha-glucosaminide N-acetyltransferase	protein coding gene	no	.	2.363	0.690	0.000	0.004(34)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
TRIP11_LS002	chr14:91972861|91974627:-	TRIP11	thyroid hormone receptor interactor 11	protein coding gene	no	ENST00000267622.8;ENST00000554357.5	38.141	25.721	17.993	0.974(9330)	0.981(689)	0.978(16991)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ERV3-1_LS001	chr7:64993414|65006541:-	ERV3-1	endogenous retrovirus group 3 member 1, envelope	protein coding gene	no	ENST00000394323.2	8.884	6.371	8.239	0.873(8366)	0.85(597)	0.948(16482)	non tumor-specific	nAS	yes
UN_VDR_LS0052	chr12:47907023|47942863:-	VDR	vitamin D receptor	protein coding gene	yes	.	1.559	2.791	0.000	0.003(25)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
PITPNC1_LS015	chr17:67687184|67692572:+	PITPNC1	phosphatidylinositol transfer protein cytoplasmic 1	protein coding gene	no	ENST00000299954.13;ENST00000580974.5;ENST00000578527.1	14.208	10.300	42.444	0.979(9383)	0.983(690)	0.979(17021)	non tumor-specific	exon_skip	yes
AUTS2_LS042	chr7:70787431|70789748:+	AUTS2	activator of transcription and developmental regulator AUTS2	protein coding gene	no	ENST00000644939.1;ENST00000406775.6;ENST00000342771.9;ENST00000644506.1;ENST00000644359.1;ENST00000615871.4;ENST00000611706.4;ENST00000647140.1;ENST00000418686.1;ENST00000646193.1	28.579	18.396	20.379	0.954(9141)	0.986(692)	0.967(16808)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_RBM23_LS0004	chr14:22897527|22901206:+	RBM23	RNA binding motif protein 23	protein coding gene	no	.	1.074	0.230	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
RNF141_LS007	chr11:10534205|10540753:-	RNF141	ring finger protein 141	protein coding gene	no	ENST00000533412.5	0.015	0.030	0.664	0.448(4291)	0.534(375)	0.023(399)	non tumor-specific	nAS	yes
UN_ST6GALNAC5_LS0018	chr1:76996871|77044204:+	ST6GALNAC5	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein coding gene	no	.	2.166	0.383	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRSS8_LS0081	chr16:31132113|31132205:+	PRSS8	serine protease 8	protein coding gene	no	.	5.037	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
NFAT5_LS024	chr16:69677335|69684890:+	NFAT5	nuclear factor of activated T cells 5	protein coding gene	no	ENST00000567990.5;ENST00000567239.5;ENST00000563474.2	2.265	1.335	2.243	0.48(4595)	0.67(470)	0.796(13844)	non tumor-specific	alt_3prime;exon_skip	yes
TRAT1_LS002	chr3:108822934|108838934:+	TRAT1	T cell receptor associated transmembrane adaptor 1	protein coding gene	no	ENST00000426646.1	0.042	0.081	0.677	0.013(123)	0.007(5)	0.004(78)	non tumor-specific	exon_skip	yes
CASP10_LS008	chr2:201195948|201200443:+	CASP10	caspase 10	protein coding gene	no	ENST00000374650.7	0.549	0.471	1.233	0.564(5403)	0.652(458)	0.562(9762)	non tumor-specific	alt_3prime	yes
CSNK1G3_LS017	chr5:123604830|123614342:+	CSNK1G3	casein kinase 1 gamma 3	protein coding gene	no	ENST00000361991.6;ENST00000515322.2	15.124	10.402	6.169	0.954(9140)	0.963(676)	0.839(14588)	non tumor-specific	exon_skip	yes
UN_FKBP10_LS0075	chr17:41822274|41822421:-	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	6.715	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP000879.1_UP_LS0016	chr11:70270424|70271545:-	AP000879.1	-	lncRNA gene	no	.	1.784	0.698	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF4_LS011	chr4:2471109|2497007:+	RNF4	ring finger protein 4	protein coding gene	no	ENST00000503123.5	0.003	0.009	0.652	0.121(1160)	0.137(96)	0.035(607)	non tumor-specific	exon_skip	yes
OXR1_LS026	chr8:106740495|106742222:+	OXR1	oxidation resistance 1	protein coding gene	no	ENST00000531443.5;ENST00000517566.6;ENST00000442977.6;ENST00000435082.1;ENST00000312046.10;ENST00000519415.6;ENST00000449762.6;ENST00000297447.10;ENST00000521592.5;ENST00000521864.1	52.779	49.954	42.435	0.992(9502)	0.997(700)	0.978(17004)	non tumor-specific	exon_skip;intron_retention	yes
YY1AP1_LS021	chr1:155672757|155675010:-	YY1AP1	YY1 associated protein 1	protein coding gene	yes	ENST00000466366.1	0.033	0.037	1.049	0.738(7071)	0.778(546)	0.598(10394)	non tumor-specific	nAS	yes
UN_MAGED1_LS0157	chrX:51901791|51901840:-	MAGED1	MAGE family member D1	protein coding gene	no	.	9.015	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2J2_LS006	chr1:1257310|1262170:-	UBE2J2	ubiquitin conjugating enzyme E2 J2	protein coding gene	no	ENST00000477894.5	0.047	0.042	0.719	0.239(2294)	0.152(107)	0.165(2860)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ODR4_LS0005	chr1:186379884|186383060:+	ODR4	odr-4 GPCR localization factor homolog	protein coding gene	no	.	3.628	1.416	0.000	0.023(220)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GLIPR1L1_LS0005	chr12:75341118|75345489:-	GLIPR1L1	GLIPR1 like 1	protein coding gene	no	.	1.216	0.306	0.000	0.006(62)	0.01(7)	0(0)	non tumor-specific	nAS	no
CFI_LS002	chr4:109741110|109742491:-	CFI	complement factor I	protein coding gene	no	ENST00000504853.3;ENST00000394634.6;ENST00000394635.7;ENST00000512148.5	93.497	133.722	22.364	0.963(9229)	0.989(694)	0.931(16184)	non tumor-specific	alt_3prime	yes
TNIP1_LS031	chr5:151042961|151045861:-	TNIP1	TNFAIP3 interacting protein 1	protein coding gene	no	ENST00000520931.5;ENST00000389378.6;ENST00000610874.4;ENST00000315050.11;ENST00000523338.5;ENST00000610535.5;ENST00000522226.5;ENST00000519339.5;ENST00000521591.5;ENST00000518977.5;ENST00000524280.5;ENST00000523200.5;ENST00000521782.1	84.457	83.295	133.150	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CUEDC2_LS0012	chr10:102425195|102431375:-	CUEDC2	CUE domain containing 2	protein coding gene	no	.	3.033	0.294	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FAM206A_LS001	chr9:108934565|108935638:+	FAM206A	actin binding transcription modulator	protein coding gene	no	ENST00000322940.10;ENST00000466200.1;ENST00000374624.7	8.126	5.216	16.245	0.955(9146)	0.962(675)	0.978(16997)	non tumor-specific	exon_skip;intron_retention	yes
TTC13_LS001	chr1:230907019|230908712:-	TTC13	tetratricopeptide repeat domain 13	protein coding gene	no	ENST00000366661.8;ENST00000366662.8	26.714	10.367	20.747	0.979(9382)	0.986(692)	0.979(17016)	non tumor-specific	nAS	yes
UN_GRIP1_LS0013	chr12:66596927|66630225:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	.	0.566	0.103	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_CALN1_LS0016	chr7:72278810|72403199:-	CALN1	calneuron 1	protein coding gene	no	.	2.991	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
DLL1_LS004	chr6:170285135|170285254:-	DLL1	delta like canonical Notch ligand 1	protein coding gene	no	ENST00000366756.3	15.020	9.502	17.014	0.855(8191)	0.972(682)	0.949(16498)	non tumor-specific	nAS	yes
UN_RPS6P12_UP_LS0006	chr9:82831126|82886139:-	RPS6P12	ribosomal protein S6 pseudogene 12	pseudogene	no	.	4.065	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SORD_LS0022	chr15:45072403|45073365:+	SORD	sorbitol dehydrogenase	protein coding gene	no	.	16.258	13.055	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_MXRA8_LS0086	chr1:1354232|1354312:-	MXRA8	matrix remodeling associated 8	protein coding gene	no	.	60.734	6.994	0.000	0.006(56)	0.009(6)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BRPF3_LS016	chr6:36218010|36222168:+	BRPF3	bromodomain and PHD finger containing 3	protein coding gene	no	ENST00000357641.10;ENST00000339717.11;ENST00000449261.6;ENST00000534400.5	31.849	25.986	18.452	0.965(9246)	0.987(693)	0.978(16992)	non tumor-specific	exon_skip	yes
AMIGO1_LS002	chr1:109508999|109509420:-	AMIGO1	adhesion molecule with Ig like domain 1	protein coding gene	no	ENST00000369864.4	1.442	1.917	3.145	0.731(7006)	0.879(617)	0.863(14995)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TAF11L11_LS0001	chr5:17604478|17604706:+	TAF11L11	TATA-box binding protein associated factor 11 like 11	protein coding gene	no	.	8.982	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	no
DIAPH3_LS010	chr13:59861536|59879229:-	DIAPH3	diaphanous related formin 3	protein coding gene	no	ENST00000400324.8;ENST00000377908.6;ENST00000400319.5;ENST00000400320.5;ENST00000267215.8;ENST00000465066.5;ENST00000498416.2	8.560	2.317	1.809	0.731(7007)	0.551(387)	0.458(7961)	non tumor-specific	exon_skip	yes
VPS72_LS014	chr1:151185950|151190005:-	VPS72	vacuolar protein sorting 72 homolog	protein coding gene	no	ENST00000491094.6;ENST00000368892.8;ENST00000354473.4;ENST00000640458.1;ENST00000471423.1	60.453	29.047	43.490	0.998(9558)	0.996(699)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
DENND1A_LS011	chr9:123437832|123440360:-	DENND1A	DENN domain containing 1A	protein coding gene	no	ENST00000479305.5	0.102	0.017	0.725	0.022(210)	0.017(12)	0.028(488)	non tumor-specific	nAS	yes
UN_PDK2_UP_LS0001	chr17:50093579|50094342:+	PDK2	pyruvate dehydrogenase kinase 2	protein coding gene	no	.	4.272	0.439	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01499_LS004	chr11:41720914|41734672:+	LINC01499	long intergenic non-protein coding RNA 1499	lncRNA gene	no	ENST00000530379.1	0.374	0.000	0.880	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_AC008663.1_LS0010	chr5:173563544|173568466:+	AC008663.1	-	lncRNA gene	no	.	6.151	0.968	0.000	0.025(243)	0.105(74)	0(0)	non tumor-specific	nAS	no
UN_F13B_LS0018	chr1:197063078|197067160:-	F13B	coagulation factor XIII B chain	protein coding gene	no	.	1.656	0.393	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RASL11A_LS0004	chr13:27271718|27273336:+	RASL11A	RAS like family 11 member A	protein coding gene	yes	.	5.048	0.178	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_LAMC3_LS0016	chr9:131054420|131056929:+	LAMC3	laminin subunit gamma 3	protein coding gene	no	.	1.184	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
XYLB_LS021	chr3:38400985|38412936:+	XYLB	xylulokinase	protein coding gene	no	ENST00000207870.7;ENST00000424034.5;ENST00000649234.1	5.097	3.543	2.061	0.702(6723)	0.689(484)	0.79(13737)	non tumor-specific	nAS	yes
PNPT1_LS013	chr2:55647453|55654900:-	PNPT1	polyribonucleotide nucleotidyltransferase 1	protein coding gene	no	ENST00000447944.6;ENST00000415374.5;ENST00000260604.8;ENST00000415489.1	39.205	18.447	26.641	0.986(9448)	0.99(695)	0.975(16948)	non tumor-specific	alt_3prime;exon_skip	yes
KCNQ2_LS043	chr20:63446837|63463684:-	KCNQ2	potassium voltage-gated channel subfamily Q member 2	protein coding gene	no	ENST00000637193.1	14.508	0.000	1.149	0.001(6)	0(0)	0.033(574)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC091132.3_UP_LS0003	chr17:45490400|45503261:+	AC091132.3	-	lncRNA gene	no	.	0.892	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AC138150.2_LS002	chr17:45171182|45171539:-	AC138150.2	-	lncRNA gene	no	ENST00000589451.1	0.248	0.089	0.724	0.227(2178)	0.164(115)	0.156(2703)	non tumor-specific	nAS	yes
AC007663.1_LS006	chr22:20307961|20309290:+	AC007663.1	-	pseudogene	no	ENST00000438948.1	4.861	1.282	1.326	0.038(362)	0.028(20)	0.229(3982)	non tumor-specific	nAS	yes
UN_GBAP1_LS0047	chr1:155218942|155227382:-	GBAP1	glucosylceramidase beta pseudogene 1	pseudogene	no	.	1.898	0.305	0.000	0.03(292)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_CSGALNACT2_LS0009	chr10:43150143|43154897:+	CSGALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	1.346	0.189	0.000	0.013(127)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RBM14-RBM4_LS0007	chr11:66617550|66623901:+	RBM14-RBM4	RBM14-RBM4 readthrough	protein coding gene	no	.	1.249	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SERP1_LS0030	chr3:150546248|150546439:+	SERP1	stress associated endoplasmic reticulum protein 1	protein coding gene	no	.	0.866	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KCNQ2_LS013	chr20:63414193|63414903:-	KCNQ2	potassium voltage-gated channel subfamily Q member 2	protein coding gene	no	ENST00000626839.2;ENST00000629676.2;ENST00000625514.2;ENST00000629241.2;ENST00000370224.5;ENST00000637193.1;ENST00000359125.6;ENST00000357249.6;ENST00000360480.7;ENST00000629318.1	3.930	3.017	19.144	0.115(1098)	0.024(17)	0.227(3940)	non tumor-specific	alt_3prime	yes
UN_MAP4K3_LS0027	chr2:39282554|39283703:-	MAP4K3	mitogen-activated protein kinase kinase kinase kinase 3	protein coding gene	no	.	0.649	0.011	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CEP164_LS023	chr11:117380714|117381701:+	CEP164	centrosomal protein 164	protein coding gene	no	ENST00000533675.5	1.433	1.084	1.227	0.165(1578)	0.135(95)	0.65(11303)	non tumor-specific	alt_3prime;alt_5prime	yes
ABI3BP_LS080	chr3:100862385|100864002:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000483129.5	0.287	0.348	1.866	0.355(3399)	0.689(484)	0.515(8944)	non tumor-specific	exon_skip	yes
UN_YWHAE_LS0057	chr17:1345117|1345153:+	YWHAE	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein coding gene	no	.	20.561	1.666	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
NXF4_LS005	chrX:102562900|102563019:+	NXF4	nuclear RNA export factor 4 pseudogene	pseudogene	no	ENST00000360035.6;ENST00000416098.1	0.271	0.000	0.730	0(1)	0(0)	0.023(402)	non tumor-specific	nAS	yes
HUWE1_LS056	chrX:53588534|53589547:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12	36.555	24.797	14.823	0.834(7992)	0.937(658)	0.965(16770)	non tumor-specific	nAS	yes
TCEA1_LS017	chr8:54003092|54010430:-	TCEA1	transcription elongation factor A1 pseudogene 2	protein coding gene	no	ENST00000521086.6	0.070	0.070	1.145	0.123(1179)	0.087(61)	0.382(6635)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
HPCA_LS001	chr1:32886119|32888878:+	HPCA	hippocalcin	protein coding gene	no	ENST00000480118.5	0.392	0.322	5.563	0.043(411)	0.007(5)	0.128(2227)	non tumor-specific	exon_skip	yes
RRBP1_LS052	chr20:17658944|17659695:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.	18.584	3.463	0.000	0.013(127)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ABCC1_LS041	chr16:16131935|16134350:+	ABCC1	ATP binding cassette subfamily C member 1	protein coding gene	no	ENST00000399410.7;ENST00000399408.6;ENST00000572882.2	62.473	30.285	22.318	0.978(9367)	0.976(685)	0.973(16920)	non tumor-specific	exon_skip	yes
SIGIRR_LS001	chr11:406059|406142:-	SIGIRR	single Ig and TIR domain containing	protein coding gene	no	ENST00000528845.5	0.061	0.203	3.888	0.868(8313)	0.865(607)	0.921(16006)	non tumor-specific	alt_5prime;intron_retention	yes
UN_ACTB_LS0456	chr7:5529684|5530524:-	ACTB	actin beta	protein coding gene	no	.	635.929	102.588	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
MRPL9_LS022	chr1:151763146|151763327:-	MRPL9	mitochondrial ribosomal protein L9	protein coding gene	no	ENST00000368830.7;ENST00000467306.5;ENST00000368829.3;ENST00000478926.5;ENST00000486707.5;ENST00000481777.5;ENST00000461182.1;ENST00000462783.1	51.768	24.845	38.328	0.983(9419)	0.991(696)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_AC106886.2_LS0006	chr16:30744462|30748206:+	AC106886.2	-	lncRNA gene	no	.	3.319	0.259	0.000	0.02(190)	0.004(3)	0(0)	non tumor-specific	nAS	no
PPARGC1A_LS012	chr4:23824384|23824463:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	ENST00000506055.5;ENST00000612355.1	1.196	0.848	1.533	0.332(3179)	0.697(489)	0.557(9684)	non tumor-specific	alt_3prime	yes
CCDC77_LS017	chr12:430736|431866:+	CCDC77	coiled-coil domain containing 77	protein coding gene	no	ENST00000540180.5;ENST00000422000.5;ENST00000543504.5;ENST00000540344.5;ENST00000239830.8;ENST00000412006.6	6.807	3.383	5.741	0.903(8652)	0.909(638)	0.961(16696)	non tumor-specific	exon_skip	yes
SLC22A12_LS020	chr11:64600938|64601488:+	SLC22A12	solute carrier family 22 member 12	protein coding gene	no	ENST00000377567.6;ENST00000377574.5;ENST00000377572.5;ENST00000473690.5;ENST00000336464.7	5.721	115.919	1.004	0.084(806)	0.212(149)	0.049(850)	non tumor-specific	alt_3prime;exon_skip	yes
UN_REPIN1_UP_LS0003	chr7:150342337|150343528:+	REPIN1	replication initiator 1	protein coding gene	no	.	2.503	0.260	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_INF2_LS0044	chr14:104712992|104713202:+	INF2	inverted formin 2	protein coding gene	no	.	9.386	2.091	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PPM1N_LS010	chr19:45500066|45500456:+	PPM1N	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein coding gene	no	ENST00000401705.5;ENST00000456399.6;ENST00000396737.6;ENST00000451287.6;ENST00000415077.1;ENST00000396735.6;ENST00000401593.5;ENST00000396736.2	5.977	1.341	3.931	0.855(8194)	0.848(595)	0.897(15598)	non tumor-specific	alt_5prime;exon_skip	yes
MED20_LS001	chr6:41907287|41909269:-	MED20	mediator complex subunit 20	protein coding gene	no	ENST00000265350.8;ENST00000467535.5;ENST00000482361.1;ENST00000394251.2	18.209	10.955	6.238	0.961(9212)	0.979(687)	0.962(16719)	non tumor-specific	alt_5prime;exon_skip	yes
AL158850.1_LS001	chr6:139159253|139170400:-	AL158850.1	-	lncRNA gene	no	ENST00000585874.5	1.858	0.344	0.676	0.002(19)	0.004(3)	0.042(723)	non tumor-specific	nAS	yes
DOCK2_LS047	chr5:170019108|170027863:+	DOCK2	dedicator of cytokinesis 2	protein coding gene	no	ENST00000256935.12;ENST00000520908.6;ENST00000524185.5;ENST00000523351.6;ENST00000433448.2	11.873	5.004	4.308	0.751(7191)	0.812(570)	0.872(15158)	non tumor-specific	nAS	yes
CCL24_LS002	chr7:75813376|75823322:-	CCL24	C-C motif chemokine ligand 24	protein coding gene	no	.;.	6.280	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MMP14_LS0245	chr14:22847285|22847413:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	2.074	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DUOX1_LS014	chr15:45136410|45136529:+	DUOX1	dual oxidase 1	protein coding gene	no	ENST00000321429.8;ENST00000389037.7;ENST00000561220.6	10.518	17.516	3.245	0.44(4220)	0.557(391)	0.608(10566)	non tumor-specific	nAS	yes
UN_PAX9_LS0009	chr14:36666360|36666462:+	PAX9	paired box 9	protein coding gene	no	.	0.694	0.086	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DDX23_LS002	chr12:48830692|48831142:-	DDX23	DEAD-box helicase 23	protein coding gene	no	ENST00000308025.7	149.151	67.728	91.129	0.97(9297)	0.964(677)	0.979(17021)	non tumor-specific	nAS	yes
PSMB7_LS020	chr9:124414935|124415364:-	PSMB7	proteasome 20S subunit beta 7	protein coding gene	no	ENST00000259457.7;ENST00000441097.1	327.620	158.395	158.816	0.942(9021)	0.944(663)	0.979(17021)	non tumor-specific	alt_5prime	yes
YPEL5_LS002	chr2:30147062|30155850:+	YPEL5	yippee like 5	protein coding gene	no	.;.	5.543	1.763	0.000	0.018(173)	0.024(17)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FMN1_LS0012	chr15:32810996|32817564:+	FMN1	formin 1	protein coding gene	no	.	2.249	0.105	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MPP6_LS0016	chr7:24650712|24661841:+	MPP6	membrane palmitoylated protein 6	protein coding gene	no	.	8.059	0.114	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC19A3_LS004	chr2:227688307|227695889:-	SLC19A3	solute carrier family 19 member 3	protein coding gene	no	ENST00000644224.1;ENST00000647113.1;ENST00000258403.8;ENST00000425817.6;ENST00000431622.6;ENST00000646591.1;ENST00000642268.1;ENST00000645700.1	4.063	8.068	2.634	0.4(3836)	0.685(481)	0.674(11710)	non tumor-specific	alt_3prime;exon_skip	yes
CLSTN3_LS009	chr12:7131838|7133024:+	CLSTN3	calsyntenin 3	protein coding gene	no	ENST00000539982.5	0.021	0.001	0.702	0.023(220)	0.013(9)	0.012(206)	non tumor-specific	alt_5prime;intron_retention	yes
KIAA1217_LS012	chr10:24438479|24473228:+	KIAA1217	KIAA1217	protein coding gene	no	ENST00000376462.5;ENST00000376456.8;ENST00000458595.5;ENST00000376452.7;ENST00000430453.6;ENST00000376454.7;ENST00000438429.5	9.217	10.211	6.976	0.782(7497)	0.902(633)	0.862(14985)	non tumor-specific	nAS	yes
UN_UBE3C_LS0043	chr7:157223351|157231080:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	0.557	0.135	0.000	0.051(487)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
HEXA_LS024	chr15:72351234|72355559:-	HEXA	hexosaminidase subunit alpha	protein coding gene	no	ENST00000563762.5;ENST00000566672.5;ENST00000569509.5;ENST00000563762.5;ENST00000566672.5;ENST00000569509.5	1.551	1.043	4.233	0.925(8860)	0.937(658)	0.933(16214)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM132B_LS011	chr12:125652632|125653565:+	TMEM132B	transmembrane protein 132B	protein coding gene	no	ENST00000299308.7;ENST00000613307.1;ENST00000535886.2	4.607	2.136	2.227	0.111(1059)	0.094(66)	0.603(10490)	non tumor-specific	nAS	yes
CPLANE1_LS041	chr5:37181005|37182760:-	CPLANE1	ciliogenesis and planar polarity effector 1	protein coding gene	no	ENST00000508244.5;ENST00000425232.6;ENST00000509849.5;ENST00000514429.5	2.695	1.617	3.988	0.595(5699)	0.692(486)	0.892(15502)	non tumor-specific	nAS	yes
AC018445.1_LS001	chr18:79470206|79470460:-	AC018445.1	-	lncRNA gene	no	ENST00000621571.1	0.252	0.005	0.801	0.012(119)	0.004(3)	0.026(446)	non tumor-specific	nAS	yes
ELMO2_LS038	chr20:46398771|46432894:-	ELMO2	engulfment and cell motility 2	protein coding gene	no	ENST00000487583.5	0.010	0.048	4.167	0.097(934)	0.088(62)	0.044(759)	non tumor-specific	nAS	yes
UN_IVD_LS0057	chr15:40419385|40419979:-	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	.	1.864	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_INTS6L_LS0012	chrX:135546469|135546773:+	INTS6L	integrator complex subunit 6 like	protein coding gene	no	.	1.896	0.183	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
MYO1F_LS024	chr19:8549600|8550166:-	MYO1F	myosin IF	protein coding gene	no	ENST00000613525.4	0.902	0.244	2.025	0.113(1080)	0.14(98)	0.736(12790)	non tumor-specific	nAS	yes
D2HGDH_LS023	chr2:241748942|241749701:+	D2HGDH	D-2-hydroxyglutarate dehydrogenase	protein coding gene	no	.;.;.	1.391	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
STOX1_LS006	chr10:68884459|68892589:+	STOX1	storkhead box 1	protein coding gene	no	ENST00000399165.8;ENST00000399165.8	1.607	0.928	2.223	0.422(4044)	0.583(409)	0.553(9615)	non tumor-specific	alt_5prime;exon_skip	yes
AC135048.1_LS003	chr16:30953460|30956200:+	AC135048.1	-	lncRNA gene	no	ENST00000562642.1	14.790	8.450	3.993	0.941(9012)	0.937(658)	0.925(16087)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MTO1_LS009	chr6:73471557|73473365:+	MTO1	mitochondrial tRNA translation optimization 1	protein coding gene	no	ENST00000521032.5	0.144	0.154	2.888	0.545(5225)	0.677(475)	0.911(15829)	non tumor-specific	exon_skip	yes
UN_RABL3_LS0011	chr3:120709909|120719664:-	RABL3	RAB, member of RAS oncogene family like 3	protein coding gene	no	.	1.951	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_KRT73-AS1_UP_LS0482	chr12:52491616|52518994:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	34.144	2.485	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LDLRAD3_LS0027	chr11:36098461|36223811:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	2.724	0.046	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ZNF687_LS019	chr1:151290007|151290122:+	ZNF687	zinc finger protein 687	protein coding gene	no	ENST00000336715.10;ENST00000449313.5;ENST00000324048.9;ENST00000426871.1	55.005	26.892	28.168	0.995(9532)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_CLHC1_LS0014	chr2:55204277|55205605:-	CLHC1	clathrin heavy chain linker domain containing 1	protein coding gene	no	.	0.945	0.158	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
USP6NL_LS009	chr10:11501208|11509595:-	USP6NL	USP6 N-terminal like	protein coding gene	no	ENST00000609104.5;ENST00000277575.5;ENST00000379237.6	13.169	8.353	5.759	0.892(8542)	0.969(680)	0.938(16296)	non tumor-specific	nAS	yes
UN_PEX26_UP_LS0006	chr22:18061258|18062156:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	2.994	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TEAD3_LS0096	chr6:35486711|35496848:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	0.475	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
SLMAP_LS046	chr3:57925934|57927296:+	SLMAP	sarcolemma associated protein	protein coding gene	no	ENST00000416658.5;ENST00000417128.5;ENST00000494088.5;ENST00000460223.1	17.537	24.214	23.292	0.957(9171)	0.98(688)	0.975(16946)	non tumor-specific	exon_skip;intron_retention	yes
UN_MFGE8_LS0011	chr15:88898868|88899050:+	MFGE8	milk fat globule EGF and factor V/VIII domain containing	protein coding gene	no	.	6.761	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC136475.10_UP_LS0008	chr11:272273|276942:-	AC136475.10	-	pseudogene	no	.	6.987	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ASMTL-AS1_LS0006	chrX:1402622|1402650:-	ASMTL-AS1	ASMTL antisense RNA 1	lncRNA gene	no	.	1.077	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL049634.3_UP_LS0002	chr20:1421921|1422007:+	AL049634.3	-	pseudogene	no	.	3.956	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCA1_LS019	chrX:129498071|129499732:-	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein coding gene	no	ENST00000617310.4;ENST00000371122.8;ENST00000371123.5;ENST00000371121.4	40.854	39.832	26.830	0.923(8840)	0.991(696)	0.937(16290)	non tumor-specific	alt_3prime	yes
UN_PPP1R12B_LS0063	chr1:202540241|202564443:+	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	0.801	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SORCS3_LS009	chr10:105147796|105157138:+	SORCS3	sortilin related VPS10 domain containing receptor 3	protein coding gene	no	ENST00000369701.7;ENST00000369699.8	5.423	3.133	1.697	0.107(1028)	0.041(29)	0.249(4326)	non tumor-specific	alt_3prime	yes
UN_SHROOM3_LS0039	chr4:76637658|76639574:+	SHROOM3	shroom family member 3	protein coding gene	no	.	1.761	0.403	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PHF8_LS005	chrX:53944243|53962844:-	PHF8	PHD finger protein 8	protein coding gene	no	ENST00000338154.10;ENST00000357988.9;ENST00000338946.10;ENST00000396282.6;ENST00000443302.5;ENST00000322659.12	27.968	14.872	21.081	0.983(9417)	0.993(697)	0.978(17004)	non tumor-specific	nAS	yes
UN_PDE8A_UP_LS0024	chr15:84949275|84951080:+	PDE8A	phosphodiesterase 8A	protein coding gene	no	.	3.328	2.005	0.000	0.021(200)	0.023(16)	0(0)	non tumor-specific	exon_skip;intron_retention	no
DYNLL1_LS004	chr12:120470104|120496416:+	DYNLL1	dynein light chain LC8-type 1	protein coding gene	no	ENST00000392509.6;ENST00000392509.6	0.666	0.733	3.047	0.266(2549)	0.228(160)	0.851(14785)	non tumor-specific	alt_3prime;exon_skip	yes
SHMT2_LS022	chr12:57232292|57232425:+	SHMT2	serine hydroxymethyltransferase 2	protein coding gene	no	ENST00000554600.5;ENST00000557269.5;ENST00000555563.5;ENST00000554656.5;ENST00000555774.5;ENST00000555116.5;ENST00000553837.5;ENST00000554604.5;ENST00000555213.1	1.527	0.738	3.755	0.924(8852)	0.868(609)	0.907(15765)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MIIP_LS0002	chr1:12019653|12021645:+	MIIP	migration and invasion inhibitory protein	protein coding gene	no	.	1.729	0.078	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_SRRM2_LS0419	chr16:2767623|2767666:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	7.909	1.427	0.000	0.012(112)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC079447.1_LS0106	chr2:99279893|99280276:-	AC079447.1	-	protein coding gene	no	.	2.099	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RBM38_LS0064	chr20:57408144|57409032:-	RBM38	RNA binding motif protein 38	protein coding gene	yes	.	1.909	1.014	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC006145.1_LS005	chr7:82023897|82027655:+	AC006145.1	-	lncRNA gene	no	ENST00000439234.5;ENST00000454066.1	4.740	0.000	0.594	0.004(40)	0(0)	0.018(307)	non tumor-specific	nAS	yes
ABLIM3_LS026	chr5:149240774|149244881:+	ABLIM3	actin binding LIM protein family member 3	protein coding gene	no	.;.	1.267	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CFTR_LS003	chr7:117479345|117479462:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000446805.1	0.486	0.232	0.976	0.066(636)	0.078(55)	0.075(1306)	non tumor-specific	exon_skip;intron_retention	yes
SDR42E2_LS005	chr16:22170951|22172256:+	SDR42E2	short chain dehydrogenase/reductase family 42E, member 2	protein coding gene	no	ENST00000602312.2	3.645	0.000	1.338	0.004(42)	0(0)	0.154(2674)	non tumor-specific	exon_skip	yes
UN_AC103563.3_LS0001	chr2:94953462|94953548:-	AC103563.3	-	pseudogene	no	.	5.458	2.017	0.000	0.006(61)	0.011(8)	0(0)	non tumor-specific	nAS	no
NME2_LS002	chr17:51165904|51166827:+	NME2	NME/NM23 nucleoside diphosphate kinase 2	protein coding gene	no	ENST00000513177.5	0.163	0.254	2.059	0.944(9047)	0.959(673)	0.716(12438)	non tumor-specific	nAS	yes
TXNDC17_LS009	chr17:6641932|6642249:+	TXNDC17	thioredoxin domain containing 17	protein coding gene	no	ENST00000574734.5	1.829	2.389	0.733	0.472(4525)	0.376(264)	0.245(4265)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ENPP7P8_LS0046	chr11:71744499|71745388:+	ENPP7P8	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8	pseudogene	no	.	4.379	0.209	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC092378.1_LS006	chr16:58756178|59064182:+	AC092378.1	-	lncRNA gene	no	ENST00000500117.1	0.495	0.000	0.812	0(2)	0(0)	0.008(134)	non tumor-specific	nAS	yes
UN_PHF20L1_LS0010	chr8:132794817|132795966:+	PHF20L1	PHD finger protein 20 like 1	protein coding gene	no	.	4.408	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
NR5A1_LS009	chr9:124503410|124507249:-	NR5A1	nuclear receptor subfamily 5 group A member 1	protein coding gene	no	ENST00000620110.4;ENST00000373588.8	22.062	38.409	2.166	0.052(501)	0.01(7)	0.082(1421)	non tumor-specific	exon_skip	yes
UN_FRG1HP_LS0011	chr9:40994699|41056955:+	FRG1HP	FSHD region gene 1 family member H, pseudogene	pseudogene	no	.	5.371	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LRRK1_LS037	chr15:101061288|101062574:+	LRRK1	leucine rich repeat kinase 1	protein coding gene	no	ENST00000388948.7;ENST00000531270.5;ENST00000526457.3;ENST00000525395.2	12.442	7.189	8.161	0.756(7246)	0.802(563)	0.939(16325)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF74_LS0012	chr22:20400758|20401206:+	ZNF74	zinc finger protein 74	protein coding gene	no	.	3.890	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_BARD1_LS0023	chr2:214793225|214797061:-	BARD1	BRCA1 associated RING domain 1	protein coding gene	yes	.	1.494	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC02532_LS013	chr6:106747288|106749634:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	ENST00000433965.5;ENST00000427903.5	9.749	10.538	1.941	0.182(1740)	0.292(205)	0.102(1780)	non tumor-specific	nAS	yes
HMBS_LS001	chr11:119085066|119085811:+	HMBS	hydroxymethylbilane synthase	protein coding gene	no	ENST00000536813.6	0.135	0.000	0.612	0.004(39)	0.006(4)	0.019(333)	non tumor-specific	exon_skip	yes
BRSK2_LS029	chr11:1456687|1456955:+	BRSK2	BR serine/threonine kinase 2	protein coding gene	no	ENST00000529433.5;ENST00000531197.5;ENST00000526678.5;ENST00000528710.5;ENST00000529951.5;ENST00000544817.5;ENST00000526768.5	3.620	3.164	2.674	0.344(3298)	0.094(66)	0.511(8881)	non tumor-specific	exon_skip	yes
ZSWIM5_LS004	chr1:45034469|45035688:-	ZSWIM5	zinc finger SWIM-type containing 5	protein coding gene	no	ENST00000359600.5	6.652	5.229	3.298	0.624(5980)	0.819(575)	0.856(14887)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EEF1A1P5_LS0122	chr9:133019858|133020306:-	EEF1A1P5	eukaryotic translation elongation factor 1 alpha 1 pseudogene 5	pseudogene	no	.	13.438	0.285	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
DUS3L_LS003	chr19:5785791|5786467:-	DUS3L	dihydrouridine synthase 3 like	protein coding gene	no	ENST00000320699.12;ENST00000589085.5;ENST00000309061.11;ENST00000592468.5;ENST00000591560.5;ENST00000592673.1	28.586	11.321	36.942	0.993(9511)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;intron_retention	yes
ENO2_LS013	chr12:6917714|6917940:+	ENO2	enolase 2	protein coding gene	no	ENST00000541477.5;ENST00000229277.5;ENST00000538763.5;ENST00000535366.5;ENST00000441285.2	62.098	64.549	69.402	0.976(9353)	0.972(682)	0.978(17008)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC069503.2_LS0014	chr12:121903107|121914992:+	AC069503.2	-	protein coding gene	no	.	2.386	0.214	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FLVCR1_LS0012	chr1:212891181|212894986:+	FLVCR1	FLVCR heme transporter 1	protein coding gene	no	.	2.207	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
PAQR8_LS002	chr6:52362249|52403162:+	PAQR8	progestin and adipoQ receptor family member 8	protein coding gene	no	ENST00000442253.2	1.701	2.117	2.843	0.657(6297)	0.719(505)	0.799(13891)	non tumor-specific	exon_skip	yes
CWC27_LS008	chr5:64789020|64800248:+	CWC27	CWC27 spliceosome associated cyclophilin	protein coding gene	no	ENST00000381070.7;ENST00000508024.1	56.363	32.693	34.834	0.992(9505)	0.997(700)	0.979(17016)	non tumor-specific	alt_5prime	yes
RBM42_LS016	chr19:35634019|35634256:+	RBM42	RNA binding motif protein 42	protein coding gene	no	ENST00000588161.5;ENST00000262633.8;ENST00000592202.5;ENST00000589559.5;ENST00000589871.1	218.164	100.220	149.841	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_RBM15B_LS0052	chr3:51392671|51392806:-	RBM15B	RNA binding motif protein 15B	protein coding gene	no	.	1.812	0.542	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC113155.1_UP_LS0003	chr4:152935450|152935690:-	AC113155.1	-	pseudogene	no	.	0.742	0.079	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRIG2_LS012	chr1:113100488|113107594:+	LRIG2	leucine rich repeats and immunoglobulin like domains 2	protein coding gene	no	ENST00000361127.5;ENST00000492207.5	3.350	2.361	2.356	0.816(7820)	0.866(608)	0.842(14637)	non tumor-specific	exon_skip	yes
UN_B4GALNT4_LS0029	chr11:381158|381669:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	.	6.467	0.110	0.000	0.032(309)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PEX19_LS012	chr1:160283109|160283530:-	PEX19	peroxisomal biogenesis factor 19	protein coding gene	no	ENST00000368072.9;ENST00000532508.5;ENST00000462644.5;ENST00000532643.5;ENST00000392220.2;ENST00000533699.5;ENST00000524939.1	54.971	40.506	38.129	0.991(9497)	0.997(700)	0.979(17015)	non tumor-specific	nAS	yes
EXOC3_LS011	chr5:454051|461960:+	EXOC3	exocyst complex component 3	protein coding gene	no	ENST00000515601.6	2.227	0.931	3.699	0.224(2144)	0.195(137)	0.933(16220)	non tumor-specific	exon_skip	yes
JMJD1C_LS015	chr10:63193151|63193345:-	JMJD1C	jumonji domain containing 1C	protein coding gene	no	ENST00000639129.1;ENST00000399262.6;ENST00000542921.5;ENST00000327520.7;ENST00000490669.1	23.420	20.392	25.839	0.969(9288)	0.99(695)	0.979(17015)	non tumor-specific	alt_3prime;intron_retention	yes
ADAMTS14_LS003	chr10:70702468|70708588:+	ADAMTS14	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein coding gene	no	ENST00000373208.5;ENST00000373207.1	3.522	0.661	1.219	0.278(2661)	0.037(26)	0.403(6997)	non tumor-specific	exon_skip	yes
PPID_LS009	chr4:158719286|158721343:-	PPID	peptidylprolyl isomerase D	protein coding gene	no	ENST00000307720.3	67.541	38.251	28.087	0.99(9483)	0.997(700)	0.979(17009)	non tumor-specific	nAS	yes
COL6A3_LS005	chr2:237333548|237334626:-	COL6A3	collagen type VI alpha 3 chain	protein coding gene	no	ENST00000353578.8;ENST00000295550.8;ENST00000491769.1;ENST00000472056.5;ENST00000347401.7;ENST00000409809.5;ENST00000493608.1	245.946	173.929	178.803	0.981(9400)	0.994(698)	0.94(16338)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CDC26_LS0005	chr9:113267439|113270807:-	CDC26	cell division cycle 26	protein coding gene	no	.	2.752	0.145	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KCNMB2-AS1_LS001	chr3:178526625|178535714:-	KCNMB2-AS1	KCNMB2 antisense RNA 1	lncRNA gene	no	ENST00000437488.5	1.556	0.000	0.705	0.013(127)	0(0)	0.007(113)	non tumor-specific	nAS	yes
CTDSP1_LS020	chr2:218401712|218402114:+	CTDSP1	CTD small phosphatase 1	protein coding gene	no	ENST00000491064.5;ENST00000443891.5;ENST00000473420.5;ENST00000497677.5;ENST00000452977.5;ENST00000428361.5;ENST00000431127.1;ENST00000488627.5;ENST00000482272.5;ENST00000464255.1;ENST00000491064.5;ENST00000443891.5;ENST00000473420.5;ENST00000497677.5;ENST00000452977.5;ENST00000428361.5;ENST00000431127.1;ENST00000488627.5;ENST00000482272.5;ENST00000464255.1	63.426	51.928	84.484	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CDK18_LS019	chr1:205525195|205526065:+	CDK18	cyclin dependent kinase 18	protein coding gene	no	ENST00000429964.6;ENST00000512922.5;ENST00000504648.5;ENST00000506784.5;ENST00000360066.6;ENST00000478560.5;ENST00000419301.1;ENST00000515494.5;ENST00000476153.6;ENST00000505932.5	12.972	8.188	24.261	0.958(9175)	0.984(691)	0.952(16544)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FDX1_LS0015	chr11:110459219|110462354:+	FDX1	ferredoxin 1	protein coding gene	no	.	1.651	1.110	0.000	0.007(65)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_CLMAT3_UP_LS0007	chr5:151638076|151654039:+	CLMAT3	colorectal liver metastasis associated transcript 3	lncRNA gene	no	.	1.343	0.499	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM84A_LS0039	chr2:14635644|14649454:+	FAM84A	LRAT domain containing 1	protein coding gene	no	.	2.581	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NFASC_LS041	chr1:204988806|204991292:+	NFASC	neurofascin	protein coding gene	no	ENST00000339876.10;ENST00000539706.5;ENST00000404076.5;ENST00000401399.5;ENST00000404907.5;ENST00000430393.5;ENST00000367173.7;ENST00000492085.1;ENST00000413225.5	1.066	1.940	4.068	0.374(3588)	0.751(527)	0.81(14088)	non tumor-specific	exon_skip;mutex_exons	yes
CDV3_LS011	chr3:133584150|133586569:+	CDV3	CDV3 homolog	protein coding gene	no	ENST00000511392.5	0.587	0.722	1.366	0.262(2515)	0.379(266)	0.702(12202)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_JAG2_LS0001	chr14:105140987|105141092:+	JAG2	jagged canonical Notch ligand 2	protein coding gene	no	.	6.317	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNST_LS0049	chr1:246648037|246655326:+	CNST	consortin, connexin sorting protein	protein coding gene	no	.	2.120	0.279	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KIAA0825_LS013	chr5:94470111|94471466:-	KIAA0825	KIAA0825	protein coding gene	no	ENST00000513200.7;ENST00000504117.1	1.021	0.298	0.976	0.137(1308)	0.329(231)	0.505(8778)	non tumor-specific	nAS	yes
UN_ZNF736P9Y_UP_LS0020	chrY:8111964|8126058:-	ZNF736P9Y	zinc finger protein 736 pseudogene 9, Y-linked	pseudogene	no	.	4.315	1.209	0.000	0.073(702)	0.027(19)	0(0)	non tumor-specific	nAS	no
CROCC_LS051	chr1:16968418|16970253:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000465021.5	2.553	1.180	2.438	0.836(8012)	0.724(508)	0.868(15090)	non tumor-specific	exon_skip	yes
LTA4H_LS008	chr12:96009148|96011753:-	LTA4H	leukotriene A4 hydrolase	protein coding gene	no	ENST00000548375.5	0.580	0.001	0.792	0.014(137)	0.023(16)	0.254(4414)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_KDM5C_LS0010	chrX:53192648|53192720:+	KDM5C	lysine demethylase 5C	protein coding gene	no	.	2.637	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PCGEM1_LS003	chr2:192750872|192775578:+	PCGEM1	PCGEM1 prostate-specific transcript	lncRNA gene	no	ENST00000454040.5	0.368	0.098	1.202	0.045(434)	0.051(36)	0.004(67)	non tumor-specific	nAS	yes
KAT2B_LS015	chr3:20140364|20146316:+	KAT2B	lysine acetyltransferase 2B	protein coding gene	no	ENST00000263754.4;ENST00000468111.1	23.471	25.864	23.947	0.944(9042)	0.991(696)	0.979(17013)	non tumor-specific	nAS	yes
TCERG1_LS002	chr5:146455281|146457183:+	TCERG1	transcription elongation regulator 1	protein coding gene	no	ENST00000507175.5;ENST00000296702.9;ENST00000394421.6;ENST00000549332.1	18.810	8.635	21.210	0.939(8997)	0.973(683)	0.971(16886)	non tumor-specific	exon_skip	yes
UN_AK9_LS0026	chr6:109656884|109659213:-	AK9	adenylate kinase 9	protein coding gene	no	.	2.300	0.110	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_GPT_LS0014	chr8:144505489|144505995:+	GPT	glutamic--pyruvic transaminase	protein coding gene	no	.	4.939	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PNMA8A_LS0011	chr19:46468577|46469662:-	PNMA8A	PNMA family member 8A	protein coding gene	no	.	8.803	0.335	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CC2D1B_LS013	chr1:52354939|52355398:-	CC2D1B	coiled-coil and C2 domain containing 1B	protein coding gene	no	ENST00000371586.6;ENST00000491136.6;ENST00000284376.7;ENST00000438021.5;ENST00000460261.5;ENST00000450942.2;ENST00000460370.1;ENST00000485966.1	34.731	20.067	57.733	0.997(9552)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
AL445253.1_LS002	chr1:22155024|22155797:+	AL445253.1	-	no	no	ENST00000648968.1	2.669	1.034	0.000	0.073(703)	0.161(113)	0(0)	non tumor-specific	nAS	yes
EIF2AK4_LS038	chr15:40029464|40030359:+	EIF2AK4	eukaryotic translation initiation factor 2 alpha kinase 4	protein coding gene	no	ENST00000263791.9;ENST00000560855.5;ENST00000558629.5;ENST00000558557.1	73.519	36.736	31.753	0.987(9455)	0.993(697)	0.979(17012)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF232_LS0032	chr17:5121489|5121599:+	ZNF232	zinc finger protein 232	protein coding gene	no	.	3.509	0.369	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PARGP1_LS008	chr10:45910706|45916079:-	PARGP1	poly(ADP-ribose) glycohydrolase pseudogene 1	pseudogene	no	ENST00000417555.2	4.906	2.773	3.325	0.572(5481)	0.644(452)	0.91(15824)	non tumor-specific	nAS	yes
F13A1_LS012	chr6:6250929|6266558:-	F13A1	coagulation factor XIII A chain	protein coding gene	no	ENST00000264870.7;ENST00000479211.1	10.334	13.757	17.320	0.801(7671)	0.905(635)	0.902(15671)	non tumor-specific	exon_skip	yes
CIDEA_LS007	chr18:12263866|12264307:+	CIDEA	cell death inducing DFFA like effector a	protein coding gene	no	ENST00000522713.5	0.281	0.052	1.478	0.007(69)	0.105(74)	0.216(3763)	non tumor-specific	exon_skip	yes
SPEG_LS018	chr2:219444742|219444825:+	SPEG	striated muscle enriched protein kinase	protein coding gene	no	ENST00000312358.11;ENST00000498378.5;ENST00000435853.5;ENST00000403148.6;ENST00000431523.5;ENST00000396698.5;ENST00000452101.1;ENST00000420132.5;ENST00000464989.5	8.483	3.864	20.795	0.601(5754)	0.689(484)	0.939(16314)	non tumor-specific	alt_3prime;exon_skip	yes
SYNE1_LS153	chr6:152455634|152455886:-	SYNE1	spectrin repeat containing nuclear envelope protein 1	protein coding gene	no	ENST00000341594.9	1.026	0.449	0.824	0.001(6)	0.003(2)	0.193(3359)	non tumor-specific	alt_3prime	yes
RNF216_LS012	chr7:5725438|5729432:-	RNF216	ring finger protein 216	protein coding gene	no	ENST00000425013.6;ENST00000389902.7;ENST00000389900.8	36.774	18.956	24.145	0.979(9382)	0.991(696)	0.979(17014)	non tumor-specific	exon_skip	yes
FRY_LS053	chr13:32236172|32237379:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	8.446	9.045	10.693	0.646(6189)	0.865(607)	0.965(16767)	non tumor-specific	nAS	yes
UN_PSD_LS0039	chr10:102418032|102418525:+	PSD	pleckstrin and Sec7 domain containing	protein coding gene	no	.	0.713	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC068831.7_LS0029	chr15:90981696|90981748:-	AC068831.7	-	protein coding gene	no	.	27.052	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_LIPJ_UP_LS0030	chr10:88132553|88365733:+	LIPJ	lipase family member J	protein coding gene	no	.	1.936	0.160	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TPM4_LS0046	chr19:16093753|16101266:+	TPM4	tropomyosin 4	protein coding gene	no	.	158.603	118.648	0.000	0.034(323)	0.057(40)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CNOT7_LS014	chr8:17245247|17246173:-	CNOT7	CCR4-NOT transcription complex subunit 7	protein coding gene	no	.;.	1.275	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
IGF2R_LS043	chr6:160089253|160089916:+	IGF2R	insulin like growth factor 2 receptor	protein coding gene	yes	ENST00000356956.5;ENST00000647592.1;ENST00000650503.1;ENST00000475834.2	112.857	79.288	56.393	0.995(9537)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SGPL1_LS025	chr10:70876661|70877195:+	SGPL1	sphingosine-1-phosphate lyase 1	protein coding gene	no	ENST00000373202.7	54.460	31.080	16.721	0.978(9369)	0.979(687)	0.978(16997)	non tumor-specific	nAS	yes
GNPNAT1_LS009	chr14:52783485|52791428:-	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	ENST00000554230.5	0.347	0.175	0.590	0.268(2568)	0.245(172)	0.006(97)	non tumor-specific	exon_skip	yes
UN_SPACA3_UP_LS0004	chr17:32945005|32947841:+	SPACA3	sperm acrosome associated 3	protein coding gene	no	.	1.160	0.845	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
TAOK3_LS008	chr12:118181607|118189807:-	TAOK3	TAO kinase 3	protein coding gene	no	ENST00000419821.6;ENST00000392533.7;ENST00000537305.5;ENST00000537952.1;ENST00000540561.5;ENST00000537822.1	43.379	28.240	26.523	0.975(9344)	0.986(692)	0.979(17016)	non tumor-specific	exon_skip	yes
EIF2B4_LS004	chr2:27366936|27367170:-	EIF2B4	eukaryotic translation initiation factor 2B subunit delta	protein coding gene	no	ENST00000417567.1	1.130	0.617	1.198	0.746(7143)	0.726(510)	0.594(10324)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TTC22_LS0013	chr1:54780670|54780759:+	TTC22	tetratricopeptide repeat domain 22	protein coding gene	no	.	1.956	0.884	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CBR4_LS0018	chr4:168998285|169002071:-	CBR4	carbonyl reductase 4	protein coding gene	no	.	12.917	10.318	0.000	0.833(7982)	0.917(644)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
CCDC91_LS044	chr12:28305806|28306742:+	CCDC91	coiled-coil domain containing 91	protein coding gene	no	ENST00000535520.5;ENST00000539107.5;ENST00000536442.5;ENST00000544649.5;ENST00000545336.5;ENST00000543534.5;ENST00000543809.5;ENST00000545737.5;ENST00000381259.5;ENST00000540401.5	27.260	20.260	21.294	0.975(9346)	0.99(695)	0.977(16990)	non tumor-specific	alt_3prime;alt_5prime	yes
SLC2A2_LS002	chr3:170998103|170999065:-	SLC2A2	solute carrier family 2 member 2	protein coding gene	no	.;.	0.038	0.318	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UGDH-AS1_LS003	chr4:39588059|39589587:+	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	ENST00000504032.1	1.629	0.731	0.992	0.055(523)	0.085(60)	0.49(8518)	non tumor-specific	nAS	yes
UN_FIZ1_LS0025	chr19:55597901|55600587:-	FIZ1	FLT3 interacting zinc finger 1	protein coding gene	no	.	0.796	0.183	0.000	0.011(104)	0.011(8)	0(0)	non tumor-specific	intron_retention	no
UN_ELF2_LS0056	chr4:139116807|139125164:-	ELF2	E74 like ETS transcription factor 2	protein coding gene	no	.	4.000	0.839	0.000	0.025(244)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_C17orf112_UP_LS0003	chr17:52925183|52926805:+	C17orf112	long intergenic non-protein coding RNA 2876	lncRNA gene	no	.	4.909	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRMT7_LS012	chr16:68311246|68315897:+	PRMT7	protein arginine methyltransferase 7	protein coding gene	no	ENST00000569571.5	0.020	0.023	0.616	0.702(6729)	0.714(501)	0.007(129)	non tumor-specific	nAS	yes
UN_GPANK1_LS0015	chr6:31664906|31664986:-	GPANK1	G-patch domain and ankyrin repeats 1	protein coding gene	no	.	2.483	0.586	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_LINC00534_LS0007	chr8:90306488|90321191:-	LINC00534	long intergenic non-protein coding RNA 534	lncRNA gene	no	.	5.311	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
ELL_LS012	chr19:18471035|18472835:-	ELL	elongation factor for RNA polymerase II	protein coding gene	yes	ENST00000594635.6	0.034	0.113	0.659	0.148(1418)	0.171(120)	0.049(853)	non tumor-specific	exon_skip	yes
RASSF3_LS007	chr12:64684894|64688216:+	RASSF3	Ras association domain family member 3	protein coding gene	yes	ENST00000637125.1;ENST00000336061.2;ENST00000542104.5	32.672	29.599	19.493	0.952(9122)	0.984(691)	0.972(16903)	non tumor-specific	exon_skip	yes
BROX_LS001	chr1:222712942|222713588:+	BROX	BRO1 domain and CAAX motif containing	protein coding gene	no	ENST00000496267.1	3.435	1.476	2.871	0.867(8308)	0.852(598)	0.92(15994)	non tumor-specific	alt_5prime;exon_skip	yes
ANO2_LS033	chr12:5832603|5854043:-	ANO2	anoctamin 2	protein coding gene	no	ENST00000544988.1	2.464	0.949	1.958	0.077(741)	0.134(94)	0.68(11812)	non tumor-specific	exon_skip	yes
CBFA2T2_LS003	chr20:33562674|33573974:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	ENST00000346541.7;ENST00000492345.5	0.680	0.136	0.666	0.05(479)	0.041(29)	0.043(745)	non tumor-specific	exon_skip;mutex_exons	yes
GRAMD2A_LS004	chr15:72162876|72163266:-	GRAMD2A	GRAM domain containing 2A	protein coding gene	no	ENST00000564184.1	0.187	0.053	0.724	0.088(843)	0.238(167)	0.043(744)	non tumor-specific	alt_3prime;intron_retention	yes
ALB_LS018	chr4:73408805|73409355:+	ALB	Fas binding factor 1	protein coding gene	no	ENST00000441319.5;ENST00000295897.8;ENST00000621085.4;ENST00000514786.1;ENST00000509063.5;ENST00000505649.5	1053.392	5804.534	2.263	0.2(1914)	0.4(281)	0.699(12149)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
RXRG_LS012	chr1:165437201|165444845:-	RXRG	retinoid X receptor gamma	protein coding gene	no	ENST00000465764.1	0.792	0.175	1.327	0.178(1710)	0.204(143)	0.289(5032)	non tumor-specific	nAS	yes
UN_BX571818.1_LS0010	chr1:206041678|206051742:+	BX571818.1	-	pseudogene	no	.	3.453	1.288	0.000	0.026(246)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SLC29A4_LS0022	chr7:5294934|5296334:+	SLC29A4	solute carrier family 29 member 4	protein coding gene	no	.	3.134	0.463	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_AL354854.1_UP_LS0003	chr9:31233840|31234445:-	AL354854.1	-	pseudogene	no	.	1.936	0.267	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CYP21A2_UP_LS0100	chr6:31996965|32029626:+	CYP21A2	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	.	41.011	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MUL1_LS0029	chr1:20502186|20503222:-	MUL1	mitochondrial E3 ubiquitin protein ligase 1	protein coding gene	no	.	4.332	0.389	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPTBN5_LS0036	chr15:41882145|41882435:-	SPTBN5	spectrin beta, non-erythrocytic 5	protein coding gene	no	.	0.534	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF187_LS0044	chr1:228493250|228493988:-	RNF187	ring finger protein 187	protein coding gene	no	.	3.000	1.018	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P1_UP_LS0007	chr4:79865671|80004023:+	KPNA2P1	karyopherin subunit alpha 2 pseudogene 1	pseudogene	no	.	4.262	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTX2_LS004	chr2:176270419|176296860:+	MTX2	metaxin 2	protein coding gene	no	ENST00000420864.5	2.948	1.882	5.600	0.946(9067)	0.966(678)	0.952(16553)	non tumor-specific	exon_skip	yes
METTL23_LS013	chr17:76727213|76729690:+	METTL23	methyltransferase like 23	protein coding gene	no	ENST00000615984.4;ENST00000592849.5;ENST00000586738.5	2.838	2.291	4.302	0.969(9282)	0.984(691)	0.942(16377)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC090403.1_UP_LS0007	chr18:27933124|27935230:-	AC090403.1	-	lncRNA gene	no	.	2.605	0.103	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCLN_LS0029	chr19:3207251|3207371:+	NCLN	nicalin	protein coding gene	no	.	22.637	2.838	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
TBCD_LS046	chr17:82923733|82924939:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000355528.8;ENST00000539345.6;ENST00000576760.5;ENST00000574975.5;ENST00000571796.5;ENST00000574422.1;ENST00000571618.5;ENST00000574818.5;ENST00000574886.1	64.879	33.167	55.584	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CLASRP_LS0007	chr19:45052994|45053098:+	CLASRP	CLK4 associating serine/arginine rich protein	protein coding gene	no	.	17.781	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF605_LS006	chr12:132945797|132956243:-	ZNF605	zinc finger protein 605	protein coding gene	no	ENST00000392321.3;ENST00000331711.11;ENST00000412621.6	1.871	1.369	2.802	0.876(8396)	0.934(656)	0.895(15565)	non tumor-specific	exon_skip	yes
AC187653.1_LS001	chr7:290276|290653:+	AC187653.1	-	protein coding gene	no	ENST00000506382.2	47.624	0.000	0.705	0.002(18)	0(0)	0.023(403)	non tumor-specific	nAS	yes
COL27A1_LS039	chr9:114252932|114258541:+	COL27A1	collagen type XXVII alpha 1 chain	protein coding gene	no	ENST00000356083.7;ENST00000494090.6	10.229	4.593	14.520	0.713(6833)	0.776(545)	0.931(16184)	non tumor-specific	nAS	yes
UN_AL023581.2_LS0003	chr6:143039828|143042303:-	AL023581.2	-	lncRNA gene	no	.	2.520	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRPC4AP_LS0077	chr20:35035308|35049866:-	TRPC4AP	transient receptor potential cation channel subfamily C member 4 associated protein	protein coding gene	no	.	5.878	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	exon_skip	no
GCGR_LS010	chr17:81811560|81811651:+	GCGR	glucagon receptor	protein coding gene	no	ENST00000400723.7	15.729	9.490	1.365	0.092(885)	0.268(188)	0.313(5442)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SPNS1_LS005	chr16:28975100|28975188:+	SPNS1	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000323081.12	0.690	1.224	5.847	0.935(8956)	0.93(653)	0.959(16663)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
COL4A3_LS048	chr2:227304144|227304985:+	COL4A3	collagen type IV alpha 3 chain	protein coding gene	no	ENST00000396578.7;ENST00000469504.2	2.043	7.588	3.156	0.191(1834)	0.467(328)	0.727(12630)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SPIRE1_LS004	chr18:12452512|12453068:-	SPIRE1	spire type actin nucleation factor 1	protein coding gene	no	ENST00000409402.8;ENST00000410092.7;ENST00000309836.9;ENST00000453447.6;ENST00000464481.5;ENST00000592156.5;ENST00000588236.1	17.071	10.706	13.439	0.897(8592)	0.94(660)	0.947(16466)	non tumor-specific	intron_retention;mutex_exons	yes
OPA1_LS036	chr3:193645625|193645728:+	OPA1	OPA1 mitochondrial dynamin like GTPase	protein coding gene	no	ENST00000361715.6;ENST00000361150.6;ENST00000361510.7;ENST00000361828.7;ENST00000392438.7;ENST00000361908.8;ENST00000644595.1;ENST00000646277.1;ENST00000642445.1;ENST00000643737.1;ENST00000644841.1;ENST00000392436.7;ENST00000646085.1;ENST00000643329.1;ENST00000646793.1;ENST00000392437.6;ENST00000645553.1;ENST00000642593.1;ENST00000644959.1;ENST00000642289.1;ENST00000646699.1;ENST00000646544.1;ENST00000483516.1	47.488	32.761	20.476	0.979(9384)	0.994(698)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_PRKCA_LS0068	chr17:66808487|66808522:-	PRKCA	protein kinase C alpha	protein coding gene	yes	.	3.503	0.523	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MRPL48_LS0011	chr11:73808350|73817825:+	MRPL48	mitochondrial ribosomal protein L48	protein coding gene	no	.	1.842	0.211	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
TTC7A_LS016	chr2:46993528|46994357:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	ENST00000409245.5;ENST00000319190.9;ENST00000461601.5;ENST00000394850.6;ENST00000409825.5;ENST00000474321.6;ENST00000491786.5	32.246	22.370	21.040	0.978(9367)	0.994(698)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_AC003087.1_UP_LS0033	chr7:24197029|24341733:-	AC003087.1	-	lncRNA gene	no	.	2.480	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
SRGAP3_LS022	chr3:9038090|9047391:-	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	ENST00000383836.7;ENST00000360413.7;ENST00000618999.4;ENST00000475560.5;ENST00000433332.7;ENST00000485983.6	5.392	4.515	2.724	0.496(4749)	0.587(412)	0.772(13427)	non tumor-specific	nAS	yes
ADAM11_LS029	chr17:44779239|44779739:+	ADAM11	ADAM metallopeptidase domain 11	protein coding gene	no	ENST00000200557.10;ENST00000355638.8;ENST00000535346.5;ENST00000587773.1	1.970	4.469	2.257	0.063(604)	0.007(5)	0.278(4838)	non tumor-specific	exon_skip;intron_retention	yes
NRAP_LS035	chr10:113643038|113645825:-	NRAP	nebulin related anchoring protein	protein coding gene	no	ENST00000369358.8;ENST00000359988.3	11.393	253.737	1.125	0.02(191)	0.056(39)	0.328(5699)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0332	chr6:31817361|31829432:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	108.443	31.857	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
CYLD_LS021	chr16:50782466|50784329:+	CYLD	CYLD lysine 63 deubiquitinase	protein coding gene	yes	ENST00000569418.5;ENST00000569891.5;ENST00000311559.13;ENST00000564326.5;ENST00000566206.5;ENST00000398568.6;ENST00000427738.7;ENST00000568704.2;ENST00000563629.1	32.390	23.347	24.281	0.962(9213)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime	yes
ARHGDIA_LS015	chr17:81869406|81869741:-	ARHGDIA	Rho GDP dissociation inhibitor alpha	protein coding gene	no	.;.	443.601	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM175_LS0026	chr4:958271|958296:-	TMEM175	transmembrane protein 175	protein coding gene	no	.	4.158	0.224	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF25_LS003	chr2:218665247|218665916:-	RNF25	ring finger protein 25	protein coding gene	no	ENST00000295704.6;ENST00000473034.5;ENST00000463188.5;ENST00000423170.1	63.994	35.954	41.944	0.997(9551)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
KLHL11_LS001	chr17:41855321|41864826:-	KLHL11	kelch like family member 11	protein coding gene	no	ENST00000319121.3	2.452	1.777	1.996	0.696(6671)	0.796(559)	0.783(13612)	non tumor-specific	nAS	yes
FAM71D_LS018	chr14:67221807|67224641:+	FAM71D	family with sequence similarity 71 member D	protein coding gene	no	ENST00000557671.2	0.161	0.000	0.716	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_SMPD1_LS0010	chr11:6393693|6393882:+	SMPD1	sphingomyelin phosphodiesterase 1	protein coding gene	no	.	2.908	1.540	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PTGER4_LS003	chr5:40681860|40685392:+	PTGER4	prostaglandin E receptor 4	protein coding gene	no	ENST00000509543.1	0.451	0.381	0.827	0.276(2648)	0.476(334)	0.278(4827)	non tumor-specific	alt_3prime	yes
UN_FAM83A_LS0002	chr8:123179959|123180132:+	FAM83A	family with sequence similarity 83 member A	protein coding gene	no	.	2.932	0.214	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_TBC1D7_LS0015	chr6:13305289|13306398:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	.	9.586	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	alt_3prime	no
FER1L4_LS014	chr20:35567654|35576167:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	ENST00000611673.4	0.386	0.045	0.839	0.076(728)	0.016(11)	0.196(3414)	non tumor-specific	nAS	yes
UN_ANKFY1_LS0039	chr17:4185046|4194978:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	.	2.878	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC004949.1_UP_LS0002	chr7:10940117|10940281:-	AC004949.1	-	lncRNA gene	no	.	4.840	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BLMH_LS015	chr17:30289482|30291311:-	BLMH	bleomycin hydrolase	protein coding gene	no	ENST00000261714.10;ENST00000584603.2;ENST00000580709.1	32.704	20.605	21.462	0.978(9373)	0.993(697)	0.978(16998)	non tumor-specific	alt_5prime;exon_skip	yes
AC023403.1_LS002	chr8:20350395|20359726:+	AC023403.1	-	lncRNA gene	no	ENST00000521139.1	2.077	0.110	0.747	0.018(174)	0.004(3)	0.058(1010)	non tumor-specific	nAS	yes
STEAP1_LS003	chr7:90161317|90161914:+	STEAP1	STEAP family member 1	protein coding gene	no	ENST00000297205.6;ENST00000475789.1;ENST00000412573.1	46.600	26.524	12.551	0.903(8655)	0.981(689)	0.884(15368)	non tumor-specific	exon_skip	yes
AC013652.1_LS001	chr15:38865722|38867970:-	AC013652.1	-	lncRNA gene	no	ENST00000560197.5	3.632	0.778	1.039	0.041(397)	0.02(14)	0.312(5420)	non tumor-specific	nAS	yes
UN_ZSWIM4_LS0060	chr19:13831365|13831506:-	ZSWIM4	zinc finger SWIM-type containing 4	protein coding gene	no	.	1.500	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
LMNA_LS008	chr1:156091097|156093709:+	LMNA	lamin A/C	protein coding gene	no	ENST00000470835.1	0.411	0.157	0.723	0.052(499)	0.031(22)	0.1(1731)	non tumor-specific	exon_skip	yes
COL12A1_LS048	chr6:75137579|75138448:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000419671.1	0.405	0.146	0.778	0.192(1836)	0.141(99)	0.152(2648)	non tumor-specific	exon_skip	yes
HNRNPH1_LS006	chr5:179614959|179616126:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	ENST00000329433.10;ENST00000524179.1;ENST00000521720.5;ENST00000329433.10;ENST00000524179.1;ENST00000521720.5	7.584	5.350	32.844	0.96(9193)	0.933(655)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
P3H4_LS001	chr17:41802423|41802711:-	P3H4	prolyl 3-hydroxylase family member 4 (inactive)	protein coding gene	no	ENST00000465097.1	0.567	0.216	0.819	0.733(7026)	0.661(464)	0.353(6128)	non tumor-specific	intron_retention	yes
UN_RPS18P13_UP_LS0001	chr19:18044038|18045440:+	RPS18P13	ribosomal protein S18 pseudogene 13	pseudogene	no	.	2.024	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC020611.2_LS002	chr12:64042940|64097486:-	AC020611.2	-	lncRNA gene	no	ENST00000535594.1	0.300	0.001	0.618	0.007(65)	0.001(1)	0.01(166)	non tumor-specific	nAS	yes
COL18A1_LS016	chr21:45478353|45479902:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	157.534	146.389	106.857	0.984(9430)	0.997(700)	0.977(16986)	non tumor-specific	exon_skip	yes
ALDH3B2_LS005	chr11:67663399|67664421:-	ALDH3B2	aldehyde dehydrogenase 3 family member B2	protein coding gene	no	ENST00000531248.1;ENST00000531248.1	0.483	0.154	0.840	0.31(2967)	0.252(177)	0.08(1390)	non tumor-specific	alt_5prime;exon_skip	yes
PARG_LS025	chr10:49941824|49970167:-	PARG	poly(ADP-ribose) glycohydrolase	protein coding gene	no	ENST00000402038.7	0.009	0.008	0.644	0.36(3448)	0.36(253)	0.015(264)	non tumor-specific	nAS	yes
TRPC3_LS012	chr4:121925206|121932271:-	TRPC3	transient receptor potential cation channel subfamily C member 3	protein coding gene	no	ENST00000264811.9;ENST00000379645.7;ENST00000513531.1	1.583	0.701	1.189	0.08(762)	0.075(53)	0.364(6321)	non tumor-specific	exon_skip	yes
PRMT5_LS014	chr14:22924183|22924270:-	PRMT5	protein arginine methyltransferase 5	protein coding gene	yes	ENST00000324366.12;ENST00000397441.6;ENST00000397440.8;ENST00000216350.12;ENST00000553915.5;ENST00000553897.5	123.346	63.578	58.672	0.992(9501)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime	yes
UN_ABCF2_LS0029	chr7:151215099|151215604:-	ABCF2	ATP binding cassette subfamily F member 2	protein coding gene	no	.	15.218	1.295	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ENTPD5_LS022	chr14:74004725|74011091:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.;.	0.876	0.179	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_C1orf87_UP_LS0016	chr1:60367932|60442278:-	C1orf87	chromosome 1 open reading frame 87	protein coding gene	no	.	1.352	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
KIRREL2_LS007	chr19:35858864|35859481:+	KIRREL2	kirre like nephrin family adhesion molecule 2	protein coding gene	no	ENST00000586102.7;ENST00000592409.5;ENST00000347900.10;ENST00000360202.9;ENST00000262625.7	4.846	1.177	1.274	0.133(1276)	0.083(58)	0.176(3051)	non tumor-specific	exon_skip	yes
UN_ZNF254_LS0046	chr19:24049548|24091901:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	1.568	0.539	0.000	0.012(119)	0.017(12)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AL358075.4_LS0008	chr1:46066964|46077515:-	AL358075.4	-	protein coding gene	no	.	7.474	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SKAP2_LS020	chr7:26854890|26864842:-	SKAP2	src kinase associated phosphoprotein 2	protein coding gene	no	ENST00000481204.5	0.109	0.046	0.647	0.506(4850)	0.664(466)	0.026(455)	non tumor-specific	nAS	yes
UN_CNN2P2_UP_LS0010	chr9:40473774|40491227:-	CNN2P2	calponin 2 pseudogene 2	pseudogene	no	.	1.797	3.141	0.000	0.021(199)	0.148(104)	0(0)	non tumor-specific	nAS	no
WDHD1_LS021	chr14:55000992|55002093:-	WDHD1	WD repeat and HMG-box DNA binding protein 1	protein coding gene	no	ENST00000360586.7;ENST00000420358.2	5.486	1.256	1.249	0.718(6876)	0.594(417)	0.594(10333)	non tumor-specific	nAS	yes
TMEM79_LS010	chr1:156285433|156286260:+	TMEM79	transmembrane protein 79	protein coding gene	no	.;.	0.357	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ROR1_LS0026	chr1:64110793|64171209:-	ROR1	RAR related orphan receptor A	protein coding gene	no	.	2.828	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
SPDYE10P_LS002	chr7:73106444|73106567:-	SPDYE10P	speedy/RINGO cell cycle regulator family member E10, pseudogene	pseudogene	no	ENST00000576332.5;ENST00000612005.1	0.341	0.153	0.685	0.1(962)	0.124(87)	0(1)	non tumor-specific	nAS	yes
UN_VSIG10_LS0038	chr12:118101227|118102989:-	VSIG10	V-set and immunoglobulin domain containing 10	protein coding gene	no	.	1.258	1.127	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
NFATC1_LS002	chr18:79396351|79433579:+	NFATC1	nuclear factor of activated T cells 1	protein coding gene	no	ENST00000397790.6	0.023	0.013	0.655	0.195(1868)	0.234(164)	0.052(912)	non tumor-specific	exon_skip	yes
KANK3_LS008	chr19:8333230|8333724:-	KANK3	KN motif and ankyrin repeat domains 3	protein coding gene	no	ENST00000330915.7;ENST00000593649.5;ENST00000610351.1;ENST00000595639.1	5.978	9.654	21.694	0.888(8509)	0.97(681)	0.949(16497)	non tumor-specific	nAS	yes
UN_CEP170B_LS0036	chr14:104884549|104885188:+	CEP170B	centrosomal protein 170B	protein coding gene	no	.	1.817	0.684	0.000	0.101(968)	0.056(39)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TCF12_LS039	chr15:57263274|57273033:+	TCF12	transcription factor 12	protein coding gene	no	ENST00000559703.1;ENST00000561420.5	4.141	1.328	2.768	0.09(858)	0.083(58)	0.88(15298)	non tumor-specific	alt_3prime	yes
LINC02104_LS001	chr5:39520462|39521519:+	LINC02104	long intergenic non-protein coding RNA 2104	lncRNA gene	no	ENST00000604954.5	1.519	0.669	1.414	0.281(2692)	0.524(368)	0.499(8671)	non tumor-specific	nAS	yes
PKD1_LS074	chr16:2113292|2114170:-	PKD1	polycystin 1, transient receptor potential channel interacting	protein coding gene	yes	ENST00000262304.8;ENST00000423118.5;ENST00000565639.6;ENST00000568591.5	4.215	3.663	21.272	0.761(7287)	0.819(575)	0.961(16697)	non tumor-specific	nAS	yes
USP19_LS038	chr3:49117361|49117437:-	USP19	ubiquitin specific peptidase 19	protein coding gene	no	ENST00000417901.5;ENST00000434032.6;ENST00000306026.5;ENST00000488993.5;ENST00000491859.5	15.791	14.077	20.142	0.963(9231)	0.987(693)	0.976(16973)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SEC14L1_LS023	chr17:77193549|77194677:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	ENST00000589827.5;ENST00000392476.6;ENST00000430767.8;ENST00000585618.5;ENST00000436233.8;ENST00000443798.8;ENST00000591786.5;ENST00000591437.5;ENST00000588616.6;ENST00000431431.6;ENST00000589202.1	38.446	36.616	36.922	0.982(9408)	0.993(697)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_TMED9_LS0030	chr5:177595580|177595944:-	TMED9	transmembrane p24 trafficking protein 9	protein coding gene	no	.	11.515	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ANK3_LS064	chr10:60146021|60166591:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000503366.5;ENST00000474360.1	0.498	1.906	1.777	0.593(5679)	0.801(562)	0.578(10046)	non tumor-specific	exon_skip	yes
UN_AC005865.2_LS0013	chr12:3306868|3307210:-	AC005865.2	-	pseudogene	no	.	4.207	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
FEZ2_LS018	chr2:36560865|36578597:-	FEZ2	fasciculation and elongation protein zeta 2	protein coding gene	no	ENST00000379245.8	9.423	10.642	4.445	0.895(8578)	0.934(656)	0.929(16149)	non tumor-specific	alt_3prime;exon_skip	yes
L1CAM_LS013	chrX:153865500|153865704:-	L1CAM	L1 cell adhesion molecule	protein coding gene	no	ENST00000361981.7;ENST00000370060.6;ENST00000370055.5;ENST00000361699.8;ENST00000474853.1	27.454	17.203	8.228	0.588(5632)	0.749(526)	0.86(14955)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM132D_LS0033	chr12:129538875|129538916:+	TMEM132D	transmembrane protein 132D	protein coding gene	no	.	11.660	0.413	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MED15_LS0043	chr22:20572155|20573785:+	MED15	mediator complex subunit 15	protein coding gene	no	.	4.278	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PRSS22_LS0018	chr16:2855340|2855574:-	PRSS22	serine protease 22	protein coding gene	no	.	7.874	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_EEF1A1_LS0052	chr6:73517759|73517801:+	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	protein coding gene	yes	.	137.902	31.550	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ZBTB46_LS0055	chr20:63790790|63792491:-	ZBTB46	zinc finger and BTB domain containing 46	protein coding gene	no	.	0.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MT-ND5_LS0061	chrM:13008|13052:+	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	protein coding gene	no	.	979.184	90.109	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF333_LS021	chr19:14707965|14708328:+	ZNF333	zinc finger protein 333	protein coding gene	no	ENST00000601134.5	0.381	0.116	0.727	0.028(272)	0.033(23)	0.226(3930)	non tumor-specific	exon_skip;intron_retention	yes
UN_LTO1_LS0027	chr11:69654384|69667895:-	LTO1	LTO1 maturation factor of ABCE1	protein coding gene	no	.	3.339	0.543	0.000	0.038(365)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
EWSAT1_LS003	chr15:69074674|69089538:+	EWSAT1	Ewing sarcoma associated transcript 1	lncRNA gene	no	ENST00000558369.5	0.085	0.367	0.762	0.002(21)	0.001(1)	0.004(76)	non tumor-specific	nAS	yes
Z83844.2_LS002	chr22:37643761|37648323:-	Z83844.2	-	lncRNA gene	no	ENST00000456099.1	3.602	0.270	0.708	0.011(106)	0.006(4)	0.062(1072)	non tumor-specific	nAS	yes
SMPD4_LS051	chr2:130176637|130181530:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000431183.6;ENST00000454468.5;ENST00000412570.5;ENST00000433118.5;ENST00000351288.10;ENST00000409031.5;ENST00000473720.5;ENST00000439029.5	20.920	10.704	16.449	0.963(9227)	0.987(693)	0.976(16970)	non tumor-specific	alt_5prime;exon_skip	yes
AKAP8L_LS015	chr19:15398703|15399302:-	AKAP8L	A-kinase anchoring protein 8 like	protein coding gene	no	ENST00000595879.5	1.772	0.641	2.075	0.657(6290)	0.679(477)	0.834(14504)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC079061.1_LS001	chr8:109644222|109645118:+	AC079061.1	-	lncRNA gene	no	ENST00000499579.1	0.284	0.300	0.866	0.04(388)	0.073(51)	0.058(1012)	non tumor-specific	nAS	yes
AP4M1_LS002	chr7:100101968|100102246:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	ENST00000394061.7	0.081	0.025	0.882	0.51(4882)	0.474(333)	0.445(7739)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_STX18-AS1_LS0035	chr4:4627436|4643214:-	STX18-AS1	STX18 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.902	0.747	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
TBX5_LS010	chr12:114403936|114407814:-	TBX5	T-box transcription factor 5	protein coding gene	yes	ENST00000310346.8	0.503	0.282	1.983	0.087(837)	0.254(178)	0.221(3836)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IGFBP3_LS0003	chr7:45912588|45912642:-	IGFBP3	insulin like growth factor binding protein 3	protein coding gene	yes	.	175.146	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AHSA1_LS005	chr14:77459806|77462160:+	AHSA1	activator of HSP90 ATPase activity 1	protein coding gene	no	ENST00000555133.5;ENST00000216479.7;ENST00000535854.6;ENST00000554156.5;ENST00000556963.5;ENST00000556866.5;ENST00000553374.5;ENST00000555457.5;ENST00000555729.3	227.053	123.105	144.578	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM15_LS016	chr1:155053988|155054150:+	ADAM15	ADAM metallopeptidase domain 15	protein coding gene	no	ENST00000473905.6;ENST00000480331.5;ENST00000527418.5;ENST00000529473.5;ENST00000526491.5;ENST00000356955.6;ENST00000449910.6;ENST00000359280.8;ENST00000360674.8;ENST00000368412.7;ENST00000355956.6;ENST00000271836.10;ENST00000461564.6;ENST00000487956.6;ENST00000531831.5;ENST00000531455.5;ENST00000447332.3;ENST00000472434.5	109.058	68.920	80.350	0.991(9494)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
POLR1E_LS004	chr9:37489400|37492282:+	POLR1E	RNA polymerase I subunit E	protein coding gene	no	ENST00000442009.6	1.343	1.126	0.862	0.249(2388)	0.303(213)	0.362(6286)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ADAM17_LS023	chr2:9536828|9543153:-	ADAM17	ADAM metallopeptidase domain 17	protein coding gene	no	ENST00000310823.8;ENST00000497134.6;ENST00000648548.1;ENST00000649227.1;ENST00000648857.1;ENST00000647622.1;ENST00000649972.1;ENST00000650241.1;ENST00000618923.2;ENST00000478059.1;ENST00000648002.1	23.675	11.729	9.660	0.926(8873)	0.959(673)	0.968(16824)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NDP_UP_LS0010	chrX:44031069|44251593:-	NDP	norrin cystine knot growth factor NDP	protein coding gene	no	.	0.915	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AGPS_LS009	chr2:177445626|177461893:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	ENST00000264167.8;ENST00000637633.1;ENST00000642466.1	43.711	28.438	15.533	0.97(9290)	0.989(694)	0.977(16984)	non tumor-specific	exon_skip	yes
AC139493.2_LS014	chr5:176183301|176185101:-	AC139493.2	-	lncRNA gene	no	ENST00000508056.5;ENST00000512260.5	0.639	0.146	1.273	0.109(1044)	0.068(48)	0.251(4356)	non tumor-specific	nAS	yes
UN_SLC25A19_LS0019	chr17:75288461|75289010:-	SLC25A19	solute carrier family 25 member 19	protein coding gene	no	.	0.404	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SLC39A14_LS020	chr8:22417835|22433891:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	ENST00000240095.10	0.222	0.050	0.637	0.068(652)	0.07(49)	0.058(1009)	non tumor-specific	exon_skip	yes
UN_UTP20_LS0021	chr12:101329449|101334425:+	UTP20	UTP20 small subunit processome component	protein coding gene	no	.	1.070	0.136	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CX3CL1_UP_LS0004	chr16:57357932|57358787:+	CX3CL1	C-X3-C motif chemokine ligand 1	protein coding gene	no	.	0.940	0.188	0.000	0.011(103)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_GRAMD1B_LS0011	chr11:123428816|123429068:-	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	.	1.262	0.098	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMARCA2_LS032	chr9:2077776|2079906:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000635739.1	1.521	0.050	0.640	0.001(6)	0.001(1)	0.058(1013)	non tumor-specific	nAS	yes
PPM1J_LS006	chr1:112711384|112711971:-	PPM1J	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein coding gene	no	ENST00000309276.10;ENST00000464951.1	6.320	2.889	7.981	0.71(6801)	0.712(500)	0.946(16452)	non tumor-specific	alt_3prime	yes
IPMK_LS004	chr10:58227139|58237729:-	IPMK	inositol polyphosphate multikinase	protein coding gene	no	ENST00000373935.3	6.203	4.101	1.953	0.761(7287)	0.863(606)	0.791(13742)	non tumor-specific	nAS	yes
UN_AC022613.1_LS0007	chr15:29677416|29680601:+	AC022613.1	-	lncRNA gene	no	.	3.935	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LMTK3_LS0030	chr19:48494105|48497393:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	.	1.846	0.198	0.000	0.015(139)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC138932.1_LS002	chr16:14917611|14917733:+	AC138932.1	-	pseudogene	no	ENST00000534164.5	4.953	2.230	0.789	0.696(6669)	0.734(515)	0.345(6001)	non tumor-specific	nAS	yes
UN_LINC00400_UP_LS0005	chr13:43021649|43065686:+	LINC00400	long intergenic non-protein coding RNA 400	lncRNA gene	no	.	3.686	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ZC3H14_LS0039	chr14:88608307|88609267:+	ZC3H14	zinc finger CCCH-type containing 14	protein coding gene	no	.	1.761	0.151	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ADAM7_LS012	chr8:24489333|24490799:+	ADAM7	ADAM metallopeptidase domain 7	protein coding gene	no	ENST00000175238.10;ENST00000380789.5;ENST00000520720.1	6.467	3.109	0.714	0.012(114)	0.016(11)	0.004(70)	non tumor-specific	nAS	yes
UN_MPL_LS0006	chr1:43349359|43350615:+	MPL	MPL proto-oncogene, thrombopoietin receptor	protein coding gene	yes	.	2.671	0.193	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMPRSS13_LS0021	chr11:117918666|117918712:+	TMPRSS13	transmembrane serine protease 13	protein coding gene	no	.	2.114	0.335	0.000	0.025(235)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AL137793.1_UP_LS0007	chr1:229102875|229122726:-	AL137793.1	-	lncRNA gene	no	.	4.292	0.268	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010486.2_UP_LS0009	chr5:84490769|84492156:+	AC010486.2	-	lncRNA gene	no	.	0.979	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
AP005203.1_LS004	chr18:5003289|5003975:-	AP005203.1	-	lncRNA gene	no	ENST00000585028.5;ENST00000584204.1	1.961	0.094	0.812	0.004(43)	0.001(1)	0.193(3362)	non tumor-specific	nAS	yes
UN_ADCY9_LS0004	chr16:3963981|3964063:+	ADCY9	adenylate cyclase 9	protein coding gene	no	.	2.107	0.791	0.000	0.008(72)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_CORO6_LS0009	chr17:29617374|29617478:-	CORO6	coronin 6	protein coding gene	no	.	2.897	0.339	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SZT2_LS0121	chr1:43451026|43451685:+	SZT2	SZT2 subunit of KICSTOR complex	protein coding gene	no	.	3.359	0.339	0.000	0.012(115)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ATP5F1E_LS0008	chr20:59030429|59030621:-	ATP5F1E	ATP synthase F1 subunit epsilon	protein coding gene	no	.	3.476	2.143	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
NKG7_LS001	chr19:51371835|51371940:-	NKG7	natural killer cell granule protein 7	protein coding gene	no	ENST00000595217.1;ENST00000221978.9;ENST00000593572.5;ENST00000595157.1	20.792	8.334	6.263	0.936(8972)	0.963(676)	0.914(15885)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SLC12A7_LS0074	chr5:1061073|1061398:-	SLC12A7	solute carrier family 12 member 7	protein coding gene	no	.	12.735	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
CTRC_LS004	chr1:15440590|15442447:+	CTRC	chymotrypsin C	protein coding gene	no	ENST00000375949.4;ENST00000483406.1	21.348	33.339	2.864	0.064(610)	0.024(17)	0.746(12971)	non tumor-specific	exon_skip	yes
UN_AC246787.2_UP_LS0493	chr14:105626013|105644546:+	AC246787.2	-	lncRNA gene	no	.	81.719	3.526	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
MRE11_LS023	chr11:94478876|94485924:-	MRE11	MRE11 homolog, double strand break repair nuclease	protein coding gene	no	ENST00000541157.5;ENST00000541157.5	0.110	0.076	0.696	0.209(2007)	0.217(152)	0.102(1777)	non tumor-specific	alt_5prime;exon_skip	yes
PRKCE_LS029	chr2:46007661|46010344:+	PRKCE	protein kinase C epsilon	protein coding gene	yes	ENST00000306156.7;ENST00000394874.1	7.523	8.870	6.743	0.793(7593)	0.942(661)	0.968(16833)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_RAB14_LS0012	chr9:121192224|121201639:-	RAB14	RAB14, member RAS oncogene family	protein coding gene	no	.	3.129	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_APOO_LS0024	chrX:23879034|23907694:-	APOO	apolipoprotein O	protein coding gene	no	.	2.457	1.062	0.000	0.015(143)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_KLHL13_LS0015	chrX:117972843|118028424:-	KLHL13	kelch like family member 13	protein coding gene	no	.	0.662	0.089	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NSMAF_LS0008	chr8:58590046|58590867:-	NSMAF	neutral sphingomyelinase activation associated factor	protein coding gene	no	.	27.604	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HAP1_LS001	chr17:41718026|41724766:-	HAP1	huntingtin-associated protein 1, pseudogene	protein coding gene	no	ENST00000458656.5;ENST00000442364.1	0.748	0.295	1.627	0.255(2445)	0.201(141)	0.322(5595)	non tumor-specific	nAS	yes
CEP95_LS035	chr17:64534737|64536602:+	CEP95	centrosomal protein 95	protein coding gene	no	ENST00000556440.6;ENST00000553412.5;ENST00000553956.6	46.518	20.983	61.959	0.989(9472)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DEDD2_LS0004	chr19:42198827|42198896:+	DEDD2	death effector domain containing 2	protein coding gene	no	.	4.646	0.091	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNY3P7_UP_LS0001	chr13:77476057|77555857:+	RNY3P7	RNY3 pseudogene 7	small non-coding RNA gene	no	.	2.459	0.079	0.000	0.02(196)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC132008.2_LS0052	chr3:197624529|197627780:-	AC132008.2	-	pseudogene	no	.	0.614	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
PPM1K_LS017	chr4:88278642|88284406:-	PPM1K	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein coding gene	no	ENST00000608933.5;ENST00000295908.11;ENST00000510548.6;ENST00000506423.1;ENST00000514204.1	2.988	4.028	6.311	0.819(7843)	0.956(671)	0.942(16378)	non tumor-specific	exon_skip	yes
UN_ATAD3B_UP_LS0008	chr1:1448419|1450681:+	ATAD3B	ATPase family AAA domain containing 3B	protein coding gene	no	.	0.884	0.018	0.000	0.01(100)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_CRMP1_LS0058	chr4:5811773|5812581:-	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	1.900	2.369	0.000	0.014(136)	0.04(28)	0(0)	non tumor-specific	nAS	no
UN_AC006453.4_UP_LS0020	chr2:88860609|89142576:+	AC006453.4	-	pseudogene	no	.	36.329	9.735	0.000	0.01(97)	0.007(5)	0(0)	non tumor-specific	nAS	no
HELZ2_LS004	chr20:63560327|63560479:-	HELZ2	helicase with zinc finger 2	protein coding gene	no	ENST00000427522.6;ENST00000467148.1	52.951	19.620	14.288	0.987(9461)	0.994(698)	0.973(16904)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_COLCA2_LS0027	chr11:111300133|111300527:+	COLCA2	colorectal cancer associated 2	protein coding gene	no	.	3.082	1.119	0.000	0.019(182)	0.037(26)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_TEAD3_LS0066	chr6:35475099|35475336:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	13.266	0.197	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
ZSWIM7_LS013	chr17:15978163|15987266:-	ZSWIM7	zinc finger SWIM-type containing 7	protein coding gene	no	.;.	5.194	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DDX39A_LS019	chr19:14412678|14413013:-	DDX39A	DExD-box helicase 39A	protein coding gene	no	ENST00000324340.13;ENST00000589318.5;ENST00000588692.5;ENST00000242776.8;ENST00000588542.5;ENST00000454233.6;ENST00000590315.5;ENST00000590260.5;ENST00000590239.5;ENST00000586993.5;ENST00000592632.5;ENST00000591275.5;ENST00000590696.1	115.792	36.096	56.824	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LINGO1_LS014	chr15:77796053|77820034:-	LINGO1	leucine rich repeat and Ig domain containing 1	protein coding gene	no	ENST00000564066.1	0.252	0.046	1.203	0.086(820)	0.037(26)	0.087(1506)	non tumor-specific	alt_5prime	yes
CCZ1B_LS019	chr7:6814845|6819766:-	CCZ1B	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein coding gene	no	ENST00000316731.12;ENST00000626257.2;ENST00000490178.1	93.962	44.847	25.372	0.995(9535)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0186	chr6:31817181|31829196:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	131.882	30.233	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	nAS	no
LIPA_LS022	chr10:89293668|89342561:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	ENST00000463623.1;ENST00000463623.1	0.142	0.028	1.316	0.049(466)	0.017(12)	0.108(1873)	non tumor-specific	alt_5prime;exon_skip	yes
GBF1_LS018	chr10:102362664|102363710:+	GBF1	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein coding gene	no	.;.	2.173	0.155	0.000	0.009(91)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC01515_LS003	chr10:65570759|65571425:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000599409.5;ENST00000608678.5	2.384	0.948	1.414	0.358(3434)	0.462(324)	0.581(10107)	non tumor-specific	nAS	yes
GOLGA1_LS025	chr9:124938866|124940106:-	GOLGA1	golgin A1	protein coding gene	no	ENST00000373555.8	10.083	7.368	8.816	0.904(8658)	0.973(683)	0.972(16892)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_CARMIL1_LS0032	chr6:25520337|25537855:+	CARMIL1	capping protein regulator and myosin 1 linker 1	protein coding gene	no	.	2.460	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
AL078590.3_LS012	chr6:134532095|134534439:-	AL078590.3	-	lncRNA gene	no	ENST00000607531.5	0.302	0.033	0.964	0.042(400)	0.038(27)	0.065(1124)	non tumor-specific	nAS	yes
UN_AC005670.2_LS0053	chr17:47024751|47047146:+	AC005670.2	-	protein coding gene	no	.	0.942	0.195	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SRPK2_LS0097	chr7:105169265|105202432:-	SRPK2	SRSF protein kinase 2	protein coding gene	no	.	1.336	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SAGE1_LS001	chrX:135896329|135901559:+	SAGE1	sarcoma antigen 1	protein coding gene	no	ENST00000324447.7;ENST00000537770.5;ENST00000370709.3	4.954	0.202	0.899	0.043(410)	0.001(1)	0.025(431)	non tumor-specific	nAS	yes
TTC9C_LS013	chr11:62738490|62739976:+	TTC9C	tetratricopeptide repeat domain 9C	protein coding gene	no	ENST00000532276.1;ENST00000532276.1;ENST00000532276.1	1.535	0.551	1.259	0.465(4455)	0.358(251)	0.611(10613)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_USP25_LS0048	chr21:15860670|15864268:+	USP25	ubiquitin specific peptidase 25	protein coding gene	no	.	1.479	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TRAPPC10_LS005	chr21:44037927|44052280:+	TRAPPC10	trafficking protein particle complex 10	protein coding gene	no	ENST00000380221.7;ENST00000291574.8;ENST00000422875.5;ENST00000380221.7;ENST00000291574.8;ENST00000422875.5	18.898	13.822	13.380	0.956(9161)	0.993(697)	0.976(16973)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IGLV3-1_LS0004	chr22:22880926|22881097:+	IGLV3-1	immunoglobulin lambda variable 3-1	no	no	.	156.664	32.919	0.000	0.004(40)	0.01(7)	0(0)	non tumor-specific	nAS	no
ABCD3_LS028	chr1:94499034|94499495:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	ENST00000370214.8;ENST00000484213.1	62.934	66.883	36.215	0.99(9484)	0.994(698)	0.975(16948)	non tumor-specific	alt_3prime;exon_skip	yes
UN_VWF_UP_LS0021	chr12:6150090|6200536:-	VWF	von Willebrand factor	protein coding gene	no	.	1.280	0.237	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	nAS	no
ACIN1_LS006	chr14:23063074|23063436:-	ACIN1	apoptotic chromatin condensation inducer 1	protein coding gene	no	ENST00000557515.5;ENST00000473758.5;ENST00000338631.10;ENST00000357481.6;ENST00000605057.5;ENST00000262710.5;ENST00000457657.5;ENST00000397341.7;ENST00000555053.5;ENST00000555478.5;ENST00000554680.5	94.549	52.498	149.353	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_NFATC4_LS0026	chr14:24376090|24376294:+	NFATC4	nuclear factor of activated T cells 4	protein coding gene	no	.	7.066	2.166	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_RF01210_UP_LS0024	chr2:172625133|172627829:+	RF01210	-	small non-coding RNA gene	no	.	3.978	0.138	0.000	0.032(304)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
AC145350.2_LS002	chr16:33046757|33060276:-	AC145350.2	-	lncRNA gene	no	ENST00000564165.1	2.244	0.013	0.638	0.004(39)	0.001(1)	0.008(132)	non tumor-specific	nAS	yes
UN_AL512324.3_LS0005	chr10:45191940|45193789:-	AL512324.3	-	pseudogene	no	.	1.775	0.068	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM182B_LS011	chr20:25775336|25859740:-	FAM182B	family with sequence similarity 182 member B	lncRNA gene	no	.;.	2.146	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPS2P25_UP_LS0001	chr5:85664468|85666919:+	RPS2P25	ribosomal protein S2 pseudogene 25	pseudogene	no	.	3.796	0.102	0.000	0.074(710)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PILRB_LS0002	chr7:100352378|100352564:+	PILRB	paired immunoglobin like type 2 receptor beta	protein coding gene	no	.	12.337	1.040	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_EPN1_LS0019	chr19:55676054|55677046:+	EPN1	epsin 1	protein coding gene	no	.	2.420	1.895	0.000	0.184(1761)	0.184(129)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
KMT2D_LS045	chr12:49044965|49045920:-	KMT2D	lysine methyltransferase 2D	protein coding gene	no	ENST00000301067.11	4.373	2.251	6.184	0.704(6747)	0.816(573)	0.94(16336)	non tumor-specific	nAS	yes
RNF214_LS018	chr11:117282536|117282746:+	RNF214	ring finger protein 214	protein coding gene	no	ENST00000300650.8;ENST00000531287.5;ENST00000531452.5;ENST00000524917.5;ENST00000534709.1	29.537	17.512	24.228	0.994(9520)	0.996(699)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_AC026434.2_UP_LS0007	chr5:61904550|61906562:-	AC026434.2	-	pseudogene	no	.	1.801	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRTC1_LS0035	chr19:18772098|18774900:+	CRTC1	CREB regulated transcription coactivator 1	protein coding gene	yes	.	1.978	0.857	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
NNT_LS010	chr5:43613650|43615848:+	NNT	nicotinamide nucleotide transhydrogenase	protein coding gene	no	ENST00000515208.1	0.142	0.106	0.654	0.144(1379)	0.245(172)	0.068(1189)	non tumor-specific	alt_5prime	yes
DOK4_LS006	chr16:57475219|57475850:-	DOK4	docking protein 4	protein coding gene	no	ENST00000561659.5	0.217	0.137	0.680	0.516(4944)	0.577(405)	0.143(2478)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF98_LS0016	chr19:22436006|22514364:-	ZNF98	zinc finger protein 98	protein coding gene	no	.	2.184	0.610	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC073320.1_UP_LS0004	chr7:129774884|129777642:+	AC073320.1	-	lncRNA gene	no	.	1.547	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
AC004771.5_LS001	chr17:4986494|4986812:+	AC004771.5	-	lncRNA gene	no	ENST00000575985.1	0.218	0.070	0.704	0.063(600)	0.06(42)	0.064(1117)	non tumor-specific	nAS	yes
UN_PPP1R12B_LS0066	chr1:202552057|202562778:+	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	0.958	0.019	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ARL2-SNX15_LS0021	chr11:65018733|65020325:+	ARL2-SNX15	ARL2-SNX15 readthrough (NMD candidate)	protein coding gene	no	.	12.144	3.954	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00894_LS0011	chrX:149944570|149945348:+	LINC00894	long intergenic non-protein coding RNA 894	lncRNA gene	no	.	1.524	0.338	0.000	0.01(97)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC126768.1_UP_LS0043	chr5:2667319|2668416:-	AC126768.1	-	lncRNA gene	no	.	8.766	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NT5C2_LS0062	chr10:103174982|103177518:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	.	3.677	0.288	0.000	0.006(62)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TLK2_LS011	chr17:62481206|62520773:+	TLK2	tousled like kinase 2	protein coding gene	no	ENST00000579450.5;ENST00000582195.5;ENST00000580705.5;ENST00000346027.9;ENST00000326270.13;ENST00000343388.11;ENST00000581041.5	9.678	6.759	9.071	0.93(8908)	0.959(673)	0.971(16879)	non tumor-specific	exon_skip	yes
CYBC1_LS033	chr17:82447621|82450700:-	CYBC1	cytochrome b-245 chaperone 1	protein coding gene	no	ENST00000584503.5;ENST00000582608.5;ENST00000584503.5;ENST00000582608.5	0.093	0.017	1.046	0.69(6612)	0.648(455)	0.507(8804)	non tumor-specific	alt_3prime;exon_skip	yes
ENDOU_LS001	chr12:47710919|47711633:-	ENDOU	endonuclease, poly(U) specific	protein coding gene	no	ENST00000229003.7;ENST00000422538.7;ENST00000545824.2	4.373	17.459	2.554	0.149(1425)	0.15(105)	0.721(12529)	non tumor-specific	exon_skip	yes
U51244.1_LS001	chr2:45674907|45675310:-	U51244.1	-	lncRNA gene	no	ENST00000423120.1	0.299	0.053	0.628	0.031(295)	0.016(11)	0.006(101)	non tumor-specific	nAS	yes
AASDH_LS029	chr4:56384341|56387362:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	ENST00000602986.5;ENST00000451613.5;ENST00000205214.10;ENST00000514745.5;ENST00000503808.5;ENST00000502617.1;ENST00000510012.1	1.733	1.253	3.890	0.86(8241)	0.936(657)	0.923(16047)	non tumor-specific	exon_skip	yes
UN_TSNARE1_LS0136	chr8:142354763|142402987:-	TSNARE1	t-SNARE domain containing 1	protein coding gene	no	.	0.983	0.215	0.000	0.009(89)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
KIAA1109_LS017	chr4:122207638|122209159:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000424425.5;ENST00000495260.5	2.508	2.495	2.889	0.469(4494)	0.739(519)	0.842(14644)	non tumor-specific	exon_skip	yes
CHD4_LS016	chr12:6578135|6578409:-	CHD4	chromodomain helicase DNA binding protein 4	protein coding gene	no	ENST00000645991.1	29.094	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime	yes
SMARCA4_LS005	chr19:10961174|10980777:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000646510.1;ENST00000429416.8;ENST00000644760.1;ENST00000646510.1;ENST00000429416.8;ENST00000644760.1	0.100	0.199	0.905	0.335(3208)	0.321(225)	0.5(8688)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TTC17_LS0019	chr11:43396893|43397347:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	.	5.053	1.261	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	no
APP_LS012	chr21:25982477|25997360:-	APP	amyloid beta precursor protein	protein coding gene	no	ENST00000346798.7;ENST00000439274.6;ENST00000358918.7;ENST00000415997.1	298.874	236.753	193.073	0.991(9492)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM94_LS033	chr17:75491467|75491691:+	TMEM94	transmembrane protein 94	protein coding gene	no	ENST00000579241.1;ENST00000580918.1	6.444	6.129	11.518	0.957(9171)	0.956(671)	0.976(16960)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TMEM63B_LS0039	chr6:44153843|44154082:+	TMEM63B	transmembrane protein 63B	protein coding gene	no	.	8.772	10.090	0.000	0.006(60)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
COL15A1_LS044	chr9:99067067|99068555:+	COL15A1	collagen type XV alpha 1 chain	protein coding gene	no	ENST00000375001.7;ENST00000610452.1	63.351	58.525	56.352	0.943(9037)	0.922(647)	0.925(16080)	non tumor-specific	exon_skip	yes
UN_AC114956.2_LS0001	chr5:43514268|43515854:+	AC114956.2	-	lncRNA gene	no	.	4.149	0.054	0.000	0.042(398)	0.004(3)	0(0)	non tumor-specific	nAS	no
LINC01676_LS008	chr1:105606089|105612900:-	LINC01676	long intergenic non-protein coding RNA 1676	lncRNA gene	no	ENST00000610126.2	0.000	0.000	0.676	0(0)	0(0)	0.002(29)	non tumor-specific	nAS	yes
UN_RNU6-493P_UP_LS0015	chrX:80841605|80841915:+	RNU6-493P	RNA, U6 small nuclear 493, pseudogene	small non-coding RNA gene	no	.	1.471	0.125	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC17A4_LS036	chr6:25778016|25779054:+	SLC17A4	solute carrier family 17 member 4	protein coding gene	no	ENST00000439485.6;ENST00000377905.8;ENST00000397076.2	16.044	5.875	6.394	0.129(1236)	0.164(115)	0.103(1784)	non tumor-specific	alt_3prime;intron_retention	yes
BTBD19_LS014	chr1:44810722|44812039:+	BTBD19	BTB domain containing 19	protein coding gene	no	ENST00000475105.5	0.361	0.129	0.679	0.064(615)	0.048(34)	0.143(2484)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLS1_LS032	chr3:142711625|142711872:+	PLS1	plastin 1	protein coding gene	no	ENST00000457734.6;ENST00000337777.7;ENST00000497002.1	34.706	42.736	2.732	0.862(8256)	0.939(659)	0.749(13011)	non tumor-specific	nAS	yes
UN_GPR158_LS0007	chr10:25292621|25333085:-	GPR158	G protein-coupled receptor 158	protein coding gene	no	.	1.481	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DENND1A_LS003	chr9:123383913|123403402:-	DENND1A	DENN domain containing 1A	protein coding gene	no	ENST00000373624.6	21.652	15.078	10.080	0.973(9322)	0.987(693)	0.97(16852)	non tumor-specific	exon_skip	yes
UN_AC007333.2_UP_LS0009	chr16:52299866|52342609:-	AC007333.2	-	lncRNA gene	no	.	10.720	0.617	0.000	0.008(81)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC046185.1_LS005	chr17:63707418|63710728:-	AC046185.1	-	protein coding gene	no	ENST00000580553.1	0.065	0.053	0.649	0.438(4194)	0.553(388)	0.045(783)	non tumor-specific	nAS	yes
SDK1_LS017	chr7:4012235|4017171:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	ENST00000404826.6;ENST00000389531.7;ENST00000615806.4	6.349	2.807	2.448	0.584(5595)	0.712(500)	0.72(12517)	non tumor-specific	nAS	yes
LVRN_LS021	chr5:116015419|116015628:+	LVRN	laeverin	protein coding gene	no	ENST00000504467.5;ENST00000395528.6;ENST00000357872.8;ENST00000514509.5;ENST00000503329.5;ENST00000512314.5;ENST00000503203.5;ENST00000515454.5	3.783	1.813	1.750	0.027(262)	0.125(88)	0.509(8840)	non tumor-specific	nAS	yes
UN_AC068587.4_LS0137	chr8:12601854|12605392:-	AC068587.4	-	lncRNA gene	no	.	3.544	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRTFB_LS0004	chr16:14071406|14079290:+	MRTFB	myocardin related transcription factor B	protein coding gene	no	.	0.855	0.272	0.000	0.019(182)	0.024(17)	0(0)	non tumor-specific	alt_5prime	no
NUGGC_LS011	chr8:28058276|28060426:-	NUGGC	nuclear GTPase, germinal center associated	protein coding gene	no	ENST00000413272.6	2.798	3.839	1.319	0.157(1500)	0.396(278)	0.237(4116)	non tumor-specific	exon_skip;mutex_exons	yes
AC008752.2_LS001	chr19:9834678|9834864:-	AC008752.2	-	lncRNA gene	no	ENST00000591174.1	0.647	0.351	0.857	0.175(1681)	0.215(151)	0.264(4590)	non tumor-specific	nAS	yes
UN_AASDH_LS0026	chr4:56384341|56385581:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	.	0.852	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM119_UP_LS0009	chr12:108633886|108652272:-	TMEM119	transmembrane protein 119	protein coding gene	no	.	0.861	0.394	0.000	0.02(193)	0.017(12)	0(0)	non tumor-specific	nAS	no
CORO7_LS047	chr16:4413404|4415715:-	CORO7	coronin 7	protein coding gene	no	ENST00000571227.5;ENST00000572026.5	0.162	0.120	0.934	0.283(2715)	0.182(128)	0.352(6122)	non tumor-specific	alt_5prime;exon_skip	yes
TCF4_LS028	chr18:55351000|55402055:-	TCF4	transcription factor 7 like 2	protein coding gene	yes	ENST00000630268.2	0.054	0.020	0.685	0.011(101)	0.036(25)	0.029(500)	non tumor-specific	alt_3prime	yes
AGTRAP_LS006	chr1:11745837|11745988:+	AGTRAP	angiotensin II receptor associated protein	protein coding gene	no	ENST00000476512.5	0.046	0.027	1.249	0.553(5302)	0.46(323)	0.611(10629)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ABTB1_LS0008	chr3:127677070|127677168:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	.	5.254	3.908	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AL162632.3_UP_LS0002	chr14:45261944|45366145:+	AL162632.3	-	lncRNA gene	no	.	3.065	0.227	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS078	chr4:122325320|122325685:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000419325.5	0.286	0.231	0.716	0.147(1409)	0.151(106)	0.169(2936)	non tumor-specific	intron_retention	yes
UBR5_LS034	chr8:102285338|102285513:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	ENST00000520539.5;ENST00000220959.8;ENST00000521922.5	35.486	21.088	28.316	0.96(9195)	0.986(692)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARAF_LS0046	chrX:47570973|47571379:-	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	.	1.644	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MYBBP1A_LS023	chr17:4548649|4549332:-	MYBBP1A	MYB binding protein 1a	protein coding gene	yes	ENST00000381556.6;ENST00000573116.5;ENST00000254718.8;ENST00000573723.1;ENST00000573175.1	49.402	21.671	32.087	0.987(9458)	0.993(697)	0.979(17009)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC105339.1_LS003	chr15:82711432|82711561:-	AC105339.1	-	pseudogene	no	ENST00000440089.1	1.967	0.000	0.800	0.001(5)	0(0)	0.083(1438)	non tumor-specific	nAS	yes
UN_SMCR8_LS0013	chr17:18323033|18323783:+	SMCR8	SMCR8-C9orf72 complex subunit	protein coding gene	no	.	1.181	0.504	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL356094.1_UP_LS0025	chr6:93724114|93736621:+	AL356094.1	-	lncRNA gene	no	.	2.166	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
SLC39A11_LS002	chr17:72647662|72648803:-	SLC39A11	solute carrier family 39 member 11	protein coding gene	no	ENST00000255559.7;ENST00000542342.6;ENST00000579988.1	37.456	21.785	11.441	0.983(9416)	0.973(683)	0.974(16922)	non tumor-specific	alt_3prime;exon_skip	yes
UN_STEAP3_LS0054	chr2:119254848|119256399:+	STEAP3	STEAP3 metalloreductase	protein coding gene	no	.	1.425	0.106	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0357	chr14:105624780|105643225:+	AC246787.2	-	lncRNA gene	no	.	125.846	21.566	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
COPS2_LS017	chr15:49137458|49139528:-	COPS2	COP9 signalosome subunit 2	protein coding gene	yes	ENST00000299259.10;ENST00000299259.10	29.344	21.891	15.197	0.972(9314)	0.991(696)	0.973(16904)	non tumor-specific	alt_3prime;exon_skip	yes
MYO5A_LS013	chr15:52340394|52346361:-	MYO5A	myosin VA	protein coding gene	no	ENST00000356338.10;ENST00000613858.4;ENST00000553916.5;ENST00000399229.6	4.150	4.488	3.918	0.795(7621)	0.84(590)	0.931(16190)	non tumor-specific	exon_skip	yes
UN_PPCS_LS0011	chr1:42457350|42459188:+	PPCS	phosphopantothenoylcysteine synthetase	protein coding gene	no	.	14.395	0.128	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPS6KC1_LS0063	chr1:213212783|213230497:+	RPS6KC1	ribosomal protein S6 kinase C1	protein coding gene	no	.	1.498	0.068	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC012020.2_UP_LS0001	chr3:108034228|108035566:-	AC012020.2	-	lncRNA gene	no	.	1.801	0.087	0.000	0.007(70)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABCD1P4_UP_LS0014	chr22:16163988|16165889:+	ABCD1P4	ATP binding cassette subfamily D member 1 pseudogene 4	pseudogene	no	.	5.909	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR1295A_UP_LS0006	chr1:171121863|171129714:-	MIR1295A	microRNA 1295a	small non-coding RNA gene	no	.	4.788	1.265	0.000	0.008(74)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_ADAT2_LS0052	chr6:143441506|143444928:-	ADAT2	adenosine deaminase tRNA specific 2	protein coding gene	no	.	2.063	0.041	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
SEMA6A_LS004	chr5:116447811|116473073:-	SEMA6A	semaphorin 6A	protein coding gene	no	ENST00000515129.5	0.360	0.275	1.335	0.373(3574)	0.437(307)	0.416(7226)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPR_LS0021	chr2:72888604|72891362:+	SPR	tachykinin receptor 1	protein coding gene	no	.	8.045	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TMPRSS11GP_LS006	chr4:68011143|68014938:-	TMPRSS11GP	transmembrane serine protease 11G, pseudogene	pseudogene	no	ENST00000431070.6	2.732	0.000	0.818	0(1)	0(0)	0.038(665)	non tumor-specific	nAS	yes
FAM205BP_LS003	chr9:34837699|34838350:-	FAM205BP	family with sequence similarity 205 member B, pseudogene	pseudogene	no	ENST00000399773.10;ENST00000455647.2;ENST00000378786.1	0.119	0.002	0.662	0.001(7)	0.001(1)	0.004(69)	non tumor-specific	nAS	yes
CEP78_LS024	chr9:78254964|78262907:+	CEP78	centrosomal protein 78	protein coding gene	no	ENST00000424347.6;ENST00000645398.1;ENST00000643347.1;ENST00000647199.1;ENST00000645865.1;ENST00000642654.1;ENST00000643847.1;ENST00000643499.1;ENST00000643273.1;ENST00000415759.6;ENST00000376597.9;ENST00000277082.9;ENST00000642669.1;ENST00000644208.1;ENST00000646288.1;ENST00000376598.3;ENST00000647130.1;ENST00000487108.6;ENST00000498582.2	10.045	4.577	8.668	0.968(9275)	0.956(671)	0.972(16902)	non tumor-specific	exon_skip	yes
PIK3R5_LS006	chr17:8884783|8886229:-	PIK3R5	phosphoinositide-3-kinase regulatory subunit 5	protein coding gene	no	ENST00000269300.8;ENST00000447110.5;ENST00000623421.3;ENST00000616147.4;ENST00000611902.4;ENST00000581552.5;ENST00000584803.1;ENST00000578515.5;ENST00000577214.1	4.564	2.862	3.841	0.659(6316)	0.687(482)	0.837(14544)	non tumor-specific	alt_3prime	yes
UN_C6orf118_LS0006	chr6:165288932|165289987:-	C6orf118	chromosome 6 open reading frame 118	protein coding gene	no	.	2.241	0.427	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FP236383.1_UP_LS0071	chr21:8214133|8258322:+	FP236383.1	-	lncRNA gene	no	.	325.240	19.392	0.000	0.009(90)	0.007(5)	0(0)	non tumor-specific	nAS	no
STARD5_LS003	chr15:81318502|81319339:-	STARD5	StAR related lipid transfer domain containing 5	protein coding gene	no	ENST00000302824.6;ENST00000560723.5;ENST00000325346.6	11.342	11.910	9.786	0.931(8921)	0.953(669)	0.955(16607)	non tumor-specific	exon_skip	yes
UN_LSM4_LS0046	chr19:18320221|18321734:+	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	.	2.077	0.626	0.000	0.004(36)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC011294.1_LS0001	chr7:46674251|46675621:-	AC011294.1	-	lncRNA gene	no	.	1.739	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_KIF26B_LS0037	chr1:245345910|245366834:+	KIF26B	kinesin family member 26B	protein coding gene	no	.	2.068	0.241	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
KIF5B_LS016	chr10:32031279|32032706:-	KIF5B	kinesin family member 5B	protein coding gene	no	ENST00000302418.4	119.263	92.862	64.264	0.977(9358)	0.993(697)	0.979(17012)	non tumor-specific	nAS	yes
TTC27_LS019	chr2:32777980|32780054:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000428527.1	0.216	0.144	1.086	0.167(1596)	0.204(143)	0.45(7826)	non tumor-specific	exon_skip	yes
SAP25_LS002	chr7:100572751|100572860:-	SAP25	Sin3A associated protein 25	protein coding gene	no	ENST00000538735.5;ENST00000622764.2;ENST00000614631.4	15.610	1.795	27.815	0.932(8931)	0.863(606)	0.977(16985)	non tumor-specific	intron_retention	yes
UN_AC008735.3_UP_LS0003	chr19:55489086|55578573:-	AC008735.3	-	lncRNA gene	no	.	1.748	0.335	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CENPB_LS0134	chr20:3786023|3786236:+	CENPB	centromere protein B	protein coding gene	no	.	2.790	0.387	0.000	0.009(89)	0.006(4)	0(0)	non tumor-specific	nAS	no
AZGP1P1_LS003	chr7:99986048|99987258:+	AZGP1P1	AZGP1 pseudogene 1	pseudogene	no	ENST00000411909.1	12.566	22.695	1.607	0.391(3748)	0.591(415)	0.278(4830)	non tumor-specific	nAS	yes
UN_IFT43_LS0017	chr14:75941780|75954424:+	IFT43	intraflagellar transport 43	protein coding gene	no	.	2.428	1.290	0.000	0.504(4829)	0.434(305)	0(0)	non tumor-specific	nAS	no
HPS1_LS007	chr10:98423887|98424313:-	HPS1	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein coding gene	no	ENST00000361490.8;ENST00000325103.10;ENST00000613394.4;ENST00000467246.5;ENST00000359632.7;ENST00000478087.5;ENST00000470095.5;ENST00000497527.1	45.240	31.694	60.965	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TOM1L1_LS026	chr17:54915862|54930073:+	TOM1L1	target of myb1 like 1 membrane trafficking protein	protein coding gene	no	ENST00000570371.5;ENST00000575882.5;ENST00000570965.5;ENST00000445275.6;ENST00000348161.8;ENST00000576932.5;ENST00000572158.5;ENST00000536554.5;ENST00000571319.5;ENST00000575333.5;ENST00000572576.5;ENST00000570977.1;ENST00000570371.5;ENST00000575882.5;ENST00000570965.5;ENST00000445275.6;ENST00000348161.8;ENST00000576932.5;ENST00000572158.5;ENST00000536554.5;ENST00000571319.5;ENST00000575333.5;ENST00000572576.5;ENST00000570977.1	44.687	42.853	20.555	0.96(9199)	0.997(700)	0.947(16459)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
JAML_LS002	chr11:118196821|118197968:-	JAML	junction adhesion molecule like	protein coding gene	no	ENST00000526595.5	0.427	0.356	1.423	0.162(1555)	0.269(189)	0.441(7658)	non tumor-specific	alt_5prime;intron_retention	yes
TXNL4A_LS011	chr18:79977701|80030521:-	TXNL4A	thioredoxin like 4A	protein coding gene	no	ENST00000592957.1	0.086	0.091	0.937	0.209(2006)	0.158(111)	0.369(6417)	non tumor-specific	exon_skip;mutex_exons	yes
SNHG14_LS069	chr15:25171092|25172448:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000553149.1	1.530	0.000	1.898	0(2)	0(0)	0.108(1882)	non tumor-specific	nAS	yes
UN_TMEM8B_LS0007	chr9:35829955|35832600:+	TMEM8B	transmembrane protein 8B	protein coding gene	no	.	0.372	0.640	0.000	0.01(93)	0.021(15)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CYBRD1_LS006	chr2:171522862|171553346:+	CYBRD1	cytochrome b reductase 1	protein coding gene	no	.;.	0.390	0.173	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_USP54_LS0011	chr10:73504272|73505278:+	USP54	ubiquitin specific peptidase 54	protein coding gene	no	.	2.939	0.417	0.000	0.017(167)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AC078923.1_LS0021	chr12:75649293|75650609:+	AC078923.1	-	lncRNA gene	no	.	2.252	2.713	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
NBEAL2_LS010	chr3:46989593|46991840:+	NBEAL2	neurobeachin like 2	protein coding gene	no	.;.	2.353	0.373	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC105052.3_LS0036	chr7:102645479|102666077:-	AC105052.3	-	protein coding gene	no	.	2.305	0.403	0.000	0.03(289)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_ELK3_LS0009	chr12:96235749|96246940:+	ELK3	ETS transcription factor ELK3	protein coding gene	yes	.	1.210	0.250	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ST14_LS0103	chr11:130209997|130210082:-	ST14	ST14 transmembrane serine protease matriptase	protein coding gene	no	.	10.554	0.391	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GATC_LS0010	chr12:120460902|120461146:+	GATC	glutamyl-tRNA amidotransferase subunit C	protein coding gene	no	.	7.877	1.359	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ME3_LS0065	chr11:86503295|86508792:-	ME3	protocadherin gamma subfamily A, 5	protein coding gene	no	.	1.993	0.744	0.000	0.161(1544)	0.11(77)	0(0)	non tumor-specific	exon_skip	no
CES2_LS015	chr16:66942249|66942648:+	CES2	carboxylesterase 2	protein coding gene	no	ENST00000417689.5;ENST00000317091.8;ENST00000568470.5;ENST00000564420.1;ENST00000567128.1	92.447	166.220	45.669	0.997(9551)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GTF2H3_LS001	chr12:123633872|123639264:+	GTF2H3	general transcription factor IIH subunit 3	protein coding gene	no	ENST00000618160.4;ENST00000542279.5;ENST00000537368.5;ENST00000538845.5;ENST00000543341.6;ENST00000537695.5;ENST00000536375.5	6.808	4.214	8.230	0.896(8585)	0.932(654)	0.959(16678)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EFHD2_LS0012	chr1:15428693|15428742:-	EFHD2	EF-hand domain family member D2	protein coding gene	no	.	0.432	0.223	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SLC26A7_LS0007	chr8:91243531|91246228:-	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	.	6.256	0.721	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCCAT333_LS005	chr7:17451061|17466152:+	KCCAT333	-	lncRNA gene	no	ENST00000419463.1;ENST00000635900.1;ENST00000636703.1	13.038	2.519	0.822	0.187(1789)	0.148(104)	0.145(2520)	non tumor-specific	nAS	yes
TERF2_LS017	chr16:69368595|69370483:-	TERF2	telomeric repeat binding factor 2	protein coding gene	no	ENST00000566257.5;ENST00000564982.6;ENST00000569611.6	1.018	0.699	1.649	0.899(8614)	0.925(649)	0.795(13812)	non tumor-specific	alt_3prime;exon_skip	yes
AL163953.1_LS001	chr14:53600183|53613653:-	AL163953.1	-	lncRNA gene	no	ENST00000436530.1	0.469	0.123	0.676	0.073(697)	0.044(31)	0.007(114)	non tumor-specific	nAS	yes
UN_CUEDC1_LS0031	chr17:57867692|57868150:-	CUEDC1	CUE domain containing 1	protein coding gene	no	.	1.052	0.377	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention;mutex_exons	no
RAPGEF6_LS011	chr5:131446703|131450023:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000512052.5	0.777	0.665	1.467	0.332(3184)	0.509(357)	0.591(10269)	non tumor-specific	exon_skip	yes
AC080162.1_LS001	chr2:9505610|9506787:+	AC080162.1	-	lncRNA gene	no	ENST00000480764.5	0.638	0.289	0.694	0.006(58)	0.009(6)	0.127(2207)	non tumor-specific	nAS	yes
UN_HLA-B_LS0542	chr6:31356775|31357094:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	26.625	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KLRD1_LS0004	chr12:10240740|10307978:+	KLRD1	killer cell lectin like receptor D1	protein coding gene	no	.	2.998	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
ATRX_LS058	chrX:77699547|77717131:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000624193.1	0.241	0.128	0.620	0.101(964)	0.152(107)	0.072(1243)	non tumor-specific	exon_skip	yes
UN_CHFR_LS0068	chr12:132872394|132875424:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	0.997	0.107	0.000	0.008(80)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC009495.3_LS0004	chr2:165795079|165795768:+	AC009495.3	-	lncRNA gene	no	.	1.600	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC073626.1_LS001	chr7:114414784|114419835:-	AC073626.1	-	lncRNA gene	no	ENST00000415146.1	1.054	0.073	0.681	0.009(91)	0.023(16)	0.014(243)	non tumor-specific	nAS	yes
UN_USP8_LS0032	chr15:50495015|50496221:-	USP8	ubiquitin specific peptidase 8	protein coding gene	no	.	1.740	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AL078587.1_LS001	chr20:26009055|26010255:-	AL078587.1	-	lncRNA gene	no	ENST00000448580.1	0.046	0.000	1.241	0.001(6)	0(0)	0(1)	non tumor-specific	nAS	yes
VMP1_LS010	chr17:59731522|59735338:+	VMP1	vacuole membrane protein 1	protein coding gene	no	ENST00000262291.8;ENST00000593168.5;ENST00000585847.5;ENST00000588131.1;ENST00000589823.6;ENST00000592106.5;ENST00000591315.5;ENST00000587259.5	41.716	27.722	32.284	0.989(9480)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
NOTCH2_LS016	chr1:119938010|119940555:-	NOTCH2	notch receptor 2	protein coding gene	yes	ENST00000256646.6	10.147	9.806	13.873	0.789(7557)	0.933(655)	0.953(16565)	non tumor-specific	nAS	yes
BCKDHB_LS006	chr6:80167811|80168875:+	BCKDHB	branched chain keto acid dehydrogenase E1 subunit beta	protein coding gene	yes	ENST00000369760.8;ENST00000356489.9;ENST00000320393.8	26.619	28.998	17.242	0.976(9350)	0.994(698)	0.971(16872)	non tumor-specific	nAS	yes
UN_S100A5_UP_LS0010	chr1:153548490|153558497:-	S100A5	S100 calcium binding protein A5	protein coding gene	no	.	2.049	0.178	0.000	0.009(89)	0.003(2)	0(0)	non tumor-specific	nAS	no
C11orf49_LS005	chr11:46987310|46991543:+	C11orf49	chromosome 11 open reading frame 49	protein coding gene	no	ENST00000527667.5	0.242	0.127	0.891	0.357(3425)	0.363(255)	0.31(5387)	non tumor-specific	exon_skip;mutex_exons	yes
PCDH15_LS013	chr10:53816277|53817995:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000644397.1;ENST00000495484.5;ENST00000642496.1;ENST00000618301.4;ENST00000476074.5	2.685	0.081	3.999	0.07(668)	0.067(47)	0.236(4095)	non tumor-specific	exon_skip	yes
UN_AC004076.1_LS0025	chr19:57456182|57477277:-	AC004076.1	-	protein coding gene	no	.	0.384	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRIM28_LS0233	chr19:58550493|58550572:-	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	6.678	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MBTPS2_LS002	chrX:21843318|21845171:+	MBTPS2	membrane bound transcription factor peptidase, site 2	protein coding gene	no	ENST00000465888.1;ENST00000379484.9;ENST00000365779.2	16.801	9.978	5.259	0.903(8647)	0.97(681)	0.927(16121)	non tumor-specific	nAS	yes
CASC1_LS033	chr12:25161197|25192694:-	CASC1	cilia and flagella associated protein 94	protein coding gene	yes	ENST00000554347.1	0.047	0.000	0.675	0.005(49)	0.007(5)	0.007(123)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC103855.2_UP_LS0007	chr11:45652606|45665995:-	AC103855.2	-	lncRNA gene	no	.	1.969	0.066	0.000	0.015(143)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_HYAL1_UP_LS0002	chr3:50312743|50318956:-	HYAL1	hyaluronidase 1	protein coding gene	no	.	0.488	0.273	0.000	0.002(18)	0.01(7)	0(0)	non tumor-specific	nAS	no
COX17_LS008	chr3:119675233|119676731:-	COX17	cytochrome c oxidase copper chaperone COX17	protein coding gene	no	ENST00000490145.1	0.040	0.014	0.825	0.784(7516)	0.805(565)	0.285(4953)	non tumor-specific	alt_5prime	yes
AL121760.1_LS001	chr20:1804092|1810554:-	AL121760.1	-	lncRNA gene	no	ENST00000447206.1	0.859	0.293	1.120	0.006(58)	0.007(5)	0.248(4307)	non tumor-specific	nAS	yes
UBR1_LS038	chr15:43047289|43070899:-	UBR1	ubiquitin protein ligase E3 component n-recognin 1	protein coding gene	no	ENST00000563239.1	0.335	0.121	0.566	0.055(526)	0.085(60)	0.008(134)	non tumor-specific	nAS	yes
MYO19_LS021	chr17:36505177|36505297:-	MYO19	myosin XIX	protein coding gene	no	ENST00000610992.4	0.078	0.176	0.642	0.128(1224)	0.085(60)	0.054(930)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF213-AS1_LS0010	chr16:3129653|3132019:-	ZNF213-AS1	ZNF213 antisense RNA 1 (head to head)	lncRNA gene	no	.	3.813	1.193	0.000	0.009(87)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_PMS1_LS0034	chr2:189873656|189877210:+	PMS1	PMS1 homolog 1, mismatch repair system component	protein coding gene	no	.	5.652	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACSF3_LS0064	chr16:89147149|89154090:+	ACSF3	acyl-CoA synthetase family member 3	protein coding gene	no	.	2.158	0.072	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CAMK2B_LS0032	chr7:44255189|44258872:-	CAMK2B	calcium/calmodulin dependent protein kinase II beta	protein coding gene	no	.	3.145	0.357	0.000	0.013(127)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SPINK5_UP_LS0011	chr5:147963822|148011607:+	SPINK5	serine peptidase inhibitor Kazal type 5	protein coding gene	no	.	2.789	0.124	0.000	0.015(140)	0.001(1)	0(0)	non tumor-specific	nAS	no
C5orf22_LS016	chr5:31545712|31551293:+	C5orf22	chromosome 5 open reading frame 22	protein coding gene	no	ENST00000325366.13;ENST00000510659.5;ENST00000513967.5	10.350	6.688	10.057	0.961(9207)	0.979(687)	0.971(16874)	non tumor-specific	exon_skip	yes
UN_AC092821.3_LS0021	chr12:9560973|9564160:+	AC092821.3	-	lncRNA gene	no	.	1.207	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM69B_LS0024	chr9:136714429|136716294:+	FAM69B	divergent protein kinase domain 1B	protein coding gene	no	.	1.758	0.034	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL15A1_LS019	chr9:99025966|99034549:+	COL15A1	collagen type XV alpha 1 chain	protein coding gene	no	ENST00000375001.7;ENST00000610452.1	33.359	26.281	24.655	0.858(8225)	0.899(631)	0.851(14798)	non tumor-specific	nAS	yes
AGBL1-AS1_LS001	chr15:86297074|86299736:-	AGBL1-AS1	AGBL1 antisense RNA 1	lncRNA gene	no	ENST00000564487.1	0.068	0.000	0.731	0(2)	0(0)	0.002(42)	non tumor-specific	nAS	yes
UN_CAMK2G_LS0030	chr10:73848082|73848189:-	CAMK2G	calcium/calmodulin dependent protein kinase II gamma	protein coding gene	no	.	29.670	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DPYSL2_LS0002	chr8:26535189|26539846:-	DPYSL2	dihydropyrimidinase like 2	protein coding gene	no	.	26.491	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TP53AIP1_LS013	chr11:128937834|128942794:-	TP53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein coding gene	no	ENST00000527504.1	0.023	0.025	2.945	0.141(1352)	0.212(149)	0.141(2447)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
POFUT2_LS039	chr21:45285328|45285678:-	POFUT2	protein O-fucosyltransferase 2	protein coding gene	no	ENST00000612472.4	0.136	0.220	1.561	0.334(3202)	0.358(251)	0.695(12084)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
LHFPL3_LS002	chr7:104736911|104845382:+	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	ENST00000401970.2	2.174	0.833	2.321	0.05(481)	0.01(7)	0.131(2273)	non tumor-specific	exon_skip	yes
CABLES2_LS010	chr20:62394265|62396315:-	CABLES2	Cdk5 and Abl enzyme substrate 2	protein coding gene	no	.;.;.	0.291	0.323	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL157714.2_LS0034	chr1:165508171|165526030:-	AL157714.2	-	lncRNA gene	no	.	1.367	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
OSER1_LS014	chr20:44207319|44210084:-	OSER1	oxidative stress responsive serine rich 1	protein coding gene	no	.;.	2.990	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
Z82195.2_LS004	chrX:130495206|130510415:-	Z82195.2	-	pseudogene	no	ENST00000458525.1	0.552	0.000	0.770	0(1)	0(0)	0.001(19)	non tumor-specific	nAS	yes
UN_CRYBA1_UP_LS0003	chr17:28783538|29201567:+	CRYBA1	crystallin beta A1	protein coding gene	no	.	0.779	0.170	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL445363.1_LS001	chr14:34541989|34542949:-	AL445363.1	-	lncRNA gene	no	ENST00000623749.1	0.291	0.254	0.624	0.004(39)	0.013(9)	0.001(22)	non tumor-specific	nAS	yes
FN1_LS018	chr2:215375393|215375629:-	FN1	fibronectin 1	protein coding gene	no	ENST00000421182.5;ENST00000323926.10;ENST00000336916.8;ENST00000357867.8;ENST00000354785.8;ENST00000359671.5;ENST00000492816.6;ENST00000446046.5;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000456923.5;ENST00000460217.1;ENST00000438981.1	453.663	326.156	166.631	0.987(9458)	0.997(700)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_AC090630.1_UP_LS0014	chr12:42024494|42026437:-	AC090630.1	-	lncRNA gene	no	.	1.996	0.106	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF4_LS0010	chr2:172928346|172960760:+	RAPGEF4	Rap guanine nucleotide exchange factor 4	protein coding gene	no	.	1.377	0.285	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
SNRPA1_LS003	chr15:101285801|101286214:-	SNRPA1	small nuclear ribonucleoprotein polypeptide A'	protein coding gene	no	ENST00000254193.10;ENST00000560496.5;ENST00000559686.3	109.889	34.338	34.518	0.997(9555)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CD99P1_LS0006	chrX:2611038|2615816:+	CD99P1	CD99 molecule pseudogene 1	pseudogene	no	.	2.082	0.416	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MARCKSL1_LS0045	chr1:32334327|32334514:+	MARCKSL1	MARCKS like 1	protein coding gene	no	.	1.590	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00899_UP_LS0002	chr22:46047520|46048179:-	LINC00899	long intergenic non-protein coding RNA 899	lncRNA gene	no	.	2.514	0.278	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PMM1_UP_LS0001	chr22:41589914|41590295:-	PMM1	phosphomannomutase 1	protein coding gene	no	.	0.877	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC026304.1_UP_LS0005	chr3:143147257|143153078:-	AC026304.1	-	lncRNA gene	no	.	2.094	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GOLGA4_LS0047	chr3:37315589|37319063:+	GOLGA4	golgin A4	protein coding gene	no	.	3.053	0.521	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
SRRM3_LS010	chr7:76265468|76267258:+	SRRM3	serine/arginine repetitive matrix 3	protein coding gene	no	ENST00000611745.1;ENST00000464752.1	0.393	0.230	12.310	0.16(1533)	0.061(43)	0.253(4389)	non tumor-specific	exon_skip	yes
UN_TPK1_LS0017	chr7:144682978|144709424:-	TPK1	thiamin pyrophosphokinase 1	protein coding gene	no	.	0.912	0.197	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DALRD3_LS025	chr3:49018213|49020846:-	DALRD3	DALR anticodon binding domain containing 3	protein coding gene	no	.;.	0.627	0.089	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL356124.1_UP_LS0005	chr6:129642018|129767128:-	AL356124.1	-	lncRNA gene	no	.	3.460	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NKAIN4_LS0032	chr20:63248895|63249407:-	NKAIN4	sodium/potassium transporting ATPase interacting 4	protein coding gene	no	.	2.675	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_C11orf96_LS0007	chr11:43943162|43943241:-	C11orf96	chromosome 11 open reading frame 96	protein coding gene	no	.	17.679	6.379	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARL4A_LS008	chr7:12687728|12688169:+	ARL4A	ADP ribosylation factor like GTPase 4A	protein coding gene	no	ENST00000404894.1	9.420	8.397	3.829	0.771(7385)	0.805(565)	0.873(15171)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_COMMD10_LS0029	chr5:116317597|116318211:+	COMMD10	COMM domain containing 10	protein coding gene	no	.	1.832	0.103	0.000	0.016(153)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ZNF844_LS001	chr19:12064876|12074031:+	ZNF844	zinc finger protein 844	protein coding gene	no	ENST00000439326.7;ENST00000441304.2	5.263	5.228	3.636	0.765(7330)	0.925(649)	0.907(15759)	non tumor-specific	exon_skip	yes
UN_AC017037.3_UP_LS0004	chr4:157835365|157929612:-	AC017037.3	-	lncRNA gene	no	.	5.557	0.256	0.000	0.015(144)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CACNA1C_LS0010	chr12:2053611|2110180:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	.	0.525	0.141	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CCNJL_LS0002	chr5:160255708|160259391:-	CCNJL	cyclin J like	protein coding gene	no	.	1.974	0.646	0.000	0.008(74)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SMARCC2_LS0031	chr12:56184244|56184832:-	SMARCC2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein coding gene	no	.	27.946	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_5prime	no
LST1_LS004	chr6:31587106|31587200:+	LST1	leukocyte specific transcript 1	protein coding gene	no	ENST00000419073.1	0.312	0.161	0.894	0.205(1963)	0.182(128)	0.268(4653)	non tumor-specific	intron_retention	yes
UN_MTA3_LS0039	chr2:42679814|42682401:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	.	2.120	0.026	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ANO6_LS027	chr12:45409487|45416699:+	ANO6	anoctamin 6	protein coding gene	no	ENST00000426898.2;ENST00000425752.6;ENST00000423947.7;ENST00000320560.12;ENST00000441606.2	38.684	32.409	16.005	0.94(9002)	0.983(690)	0.96(16684)	non tumor-specific	exon_skip	yes
UN_PCGF2_LS0049	chr17:38737107|38738353:-	PCGF2	polycomb group ring finger 2	protein coding gene	yes	.	3.208	0.066	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_APH1B_LS0008	chr15:63302472|63302724:+	APH1B	aph-1 homolog B, gamma-secretase subunit	protein coding gene	no	.	4.905	0.135	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC090227.1_LS0005	chr18:49799804|49802728:+	AC090227.1	-	protein coding gene	no	.	2.736	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-242P_UP_LS0005	chr2:43098040|43128738:-	RNU6-242P	RNA, U6 small nuclear 242, pseudogene	small non-coding RNA gene	no	.	1.706	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ATRN_LS007	chr20:3559483|3560662:+	ATRN	attractin	protein coding gene	no	ENST00000262919.9;ENST00000446916.2	31.140	27.745	9.865	0.939(8994)	0.979(687)	0.962(16716)	non tumor-specific	nAS	yes
AC104984.4_LS001	chr17:30238800|30252074:+	AC104984.4	-	lncRNA gene	no	ENST00000577420.1	0.241	0.216	0.708	0.032(306)	0.182(128)	0.011(185)	non tumor-specific	nAS	yes
SOX2-OT_LS058	chr3:181715292|181736375:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000600801.6	0.078	0.025	1.318	0.071(676)	0.007(5)	0.07(1215)	non tumor-specific	nAS	yes
HDAC4_LS003	chr2:239054833|239066722:-	HDAC4	histone deacetylase 4	protein coding gene	no	ENST00000345617.7;ENST00000543185.5;ENST00000430200.1	9.046	6.457	9.335	0.925(8860)	0.917(644)	0.973(16908)	non tumor-specific	nAS	yes
HCCS_LS005	chrX:11114986|11117267:+	HCCS	holocytochrome c synthase	protein coding gene	no	ENST00000321143.8;ENST00000380763.7;ENST00000380762.4	54.327	33.375	29.157	0.995(9534)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
MKS1_LS022	chr17:58214387|58216088:-	MKS1	MKS transition zone complex subunit 1	protein coding gene	no	ENST00000393120.6	0.164	0.140	1.094	0.46(4407)	0.504(354)	0.54(9390)	non tumor-specific	exon_skip	yes
UN_AC006453.1_UP_LS0237	chr2:90115233|90154408:-	AC006453.1	-	pseudogene	no	.	14.786	1.888	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM157A_LS0075	chr3:198219980|198220127:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	2.236	0.208	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
OSBPL9_LS022	chr1:51749588|51750145:+	OSBPL9	oxysterol binding protein like 9	protein coding gene	no	ENST00000533884.5;ENST00000481937.5;ENST00000526917.5	0.028	0.024	1.074	0.445(4265)	0.613(430)	0.558(9704)	non tumor-specific	exon_skip	yes
HPS4_LS022	chr22:26466262|26470719:-	HPS4	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein coding gene	no	.;.	3.950	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF619P1_UP_LS0002	chr7:45991077|46036618:+	ZNF619P1	zinc finger protein 619 pseudogene 1	pseudogene	no	.	3.062	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
FREM1_LS019	chr9:14770806|14775789:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	ENST00000422223.6;ENST00000380894.5;ENST00000380880.3;ENST00000486223.1	4.448	5.097	3.150	0.217(2075)	0.546(383)	0.762(13242)	non tumor-specific	alt_3prime	yes
DNAH12_LS009	chr3:57309854|57310717:-	DNAH12	dynein axonemal heavy chain 12	protein coding gene	no	ENST00000495027.5;ENST00000351747.6;ENST00000466540.2	3.733	2.319	1.036	0.056(533)	0.103(72)	0.264(4585)	non tumor-specific	nAS	yes
UN_LINC01256_UP_LS0020	chr4:132313358|132327879:+	LINC01256	long intergenic non-protein coding RNA 1256	lncRNA gene	no	.	5.563	0.288	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC137630.2_LS001	chr3:48980346|48983727:-	AC137630.2	-	lncRNA gene	no	ENST00000429681.1	0.182	0.113	0.783	0.32(3065)	0.356(250)	0.069(1196)	non tumor-specific	nAS	yes
RTF2_LS011	chr20:56474771|56476985:+	RTF2	replication termination factor 2	protein coding gene	no	ENST00000023939.8;ENST00000357348.9;ENST00000395881.7;ENST00000449062.1;ENST00000466260.1	220.086	142.763	111.153	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_AP002001.1_UP_LS0006	chr11:106177330|106185205:+	AP002001.1	-	pseudogene	no	.	1.601	0.187	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
BORCS8_LS003	chr19:19177515|19178847:-	BORCS8	BLOC-1 related complex subunit 8	protein coding gene	no	ENST00000488252.6	0.005	0.015	0.802	0.243(2326)	0.191(134)	0.322(5599)	non tumor-specific	intron_retention	yes
UN_FREM1_LS0047	chr9:14869244|14910155:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	.	0.947	0.149	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_ZFYVE16_LS0013	chr5:80440032|80443203:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	.	1.364	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
EME1_LS009	chr17:50376193|50378774:+	EME1	essential meiotic structure-specific endonuclease 1	protein coding gene	no	ENST00000510246.1	0.154	0.091	0.744	0.486(4653)	0.061(43)	0.107(1867)	non tumor-specific	exon_skip	yes
TMEM161B_LS032	chr5:88240916|88268788:-	TMEM161B	transmembrane protein 161B	protein coding gene	no	ENST00000503194.1	0.053	0.095	0.847	0.081(778)	0.118(83)	0.444(7713)	non tumor-specific	alt_5prime;exon_skip	yes
CYP2W1_LS003	chr7:984574|984950:+	CYP2W1	cytochrome P450 family 2 subfamily W member 1	protein coding gene	no	ENST00000308919.11;ENST00000340150.10	8.435	1.166	2.796	0.207(1980)	0.155(109)	0.24(4167)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GOLGA2P5_LS021	chr12:100168633|100168924:-	GOLGA2P5	GOLGA2 pseudogene 5	pseudogene	no	ENST00000421840.2	1.800	1.302	2.740	0.437(4183)	0.541(380)	0.821(14272)	non tumor-specific	nAS	yes
UN_GALNT5_LS0019	chr2:157309633|157311208:+	GALNT5	polypeptide N-acetylgalactosaminyltransferase 5	protein coding gene	no	.	0.375	0.047	0.000	0.01(99)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
TMEM52B_LS009	chr12:10185368|10186420:+	TMEM52B	transmembrane protein 52B	protein coding gene	no	ENST00000381923.6;ENST00000298530.7;ENST00000543484.1	6.310	35.471	0.914	0.11(1058)	0.224(157)	0.06(1037)	non tumor-specific	exon_skip	yes
LAT2_LS015	chr7:74220734|74221637:+	LAT2	solute carrier family 7 member 8	protein coding gene	yes	ENST00000344995.9;ENST00000460943.5;ENST00000398475.5;ENST00000275635.11;ENST00000490586.1	30.335	11.092	5.589	0.925(8864)	0.972(682)	0.946(16440)	non tumor-specific	exon_skip	yes
UN_PLBD2_LS0168	chr12:113390213|113390306:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	2.891	0.114	0.000	0.008(80)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LIMS2_LS0077	chr2:127657562|127657952:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	1.447	0.625	0.000	0.028(268)	0.057(40)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CEP128_LS030	chr14:80916562|80958178:-	CEP128	centrosomal protein 128	protein coding gene	no	ENST00000556042.5	0.206	0.070	0.689	0.055(531)	0.04(28)	0.03(519)	non tumor-specific	exon_skip	yes
UN_AC068831.1_LS0001	chr15:90953578|90954335:-	AC068831.1	-	lncRNA gene	no	.	0.882	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AGRN_UP_LS0004	chr1:1000953|1008194:+	AGRN	agrin	protein coding gene	yes	.	2.260	0.093	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNBD2_LS015	chr20:36011257|36023614:+	CNBD2	cyclic nucleotide binding domain containing 2	protein coding gene	no	ENST00000349339.5	1.561	0.000	0.697	0(2)	0(0)	0.007(126)	non tumor-specific	alt_3prime;exon_skip	yes
NAA80_LS003	chr3:50297672|50297807:-	NAA80	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein coding gene	no	ENST00000452674.1	0.049	0.023	0.838	0.199(1905)	0.192(135)	0.414(7190)	non tumor-specific	intron_retention	yes
UN_SLC17A5_UP_LS0014	chr6:73660758|73660809:-	SLC17A5	solute carrier family 17 member 5	protein coding gene	no	.	2.857	0.618	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EXTL3_LS0045	chr8:28737663|28743122:+	EXTL3	exostosin like glycosyltransferase 3	protein coding gene	yes	.	3.718	0.775	0.000	0.01(98)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAH3_LS066	chr16:21150534|21150751:-	DNAH3	dynein axonemal heavy chain 3	protein coding gene	no	ENST00000396036.5;ENST00000575491.1	0.808	0.791	1.164	0.04(385)	0.077(54)	0.029(505)	non tumor-specific	nAS	yes
UN_FBXO42_LS0023	chr1:16305919|16310236:-	FBXO42	F-box protein 42	protein coding gene	no	.	2.520	0.124	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
IQGAP2_LS032	chr5:76658667|76660028:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000514579.1	0.377	0.203	0.849	0.176(1690)	0.204(143)	0.158(2739)	non tumor-specific	nAS	yes
UN_ANK3_LS0045	chr10:60263149|60263835:-	ANK3	ankyrin 3	protein coding gene	no	.	2.192	0.738	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UBXN2B_LS002	chr8:58411469|58416850:+	UBXN2B	UBX domain protein 2B	protein coding gene	no	ENST00000399598.6;ENST00000520732.5;ENST00000523409.5;ENST00000638450.1	4.484	3.066	4.653	0.96(9200)	0.986(692)	0.953(16564)	non tumor-specific	exon_skip	yes
CDK5RAP2_LS049	chr9:120528904|120529978:-	CDK5RAP2	CDK5 regulatory subunit associated protein 2	protein coding gene	no	ENST00000481266.1	0.047	0.008	0.547	0.004(35)	0.004(3)	0.003(59)	non tumor-specific	nAS	yes
UN_MGAT4A_LS0003	chr2:98622922|98624363:+	MGAT4A	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein coding gene	no	.	1.441	0.361	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLCO6A1_LS010	chr5:102420021|102438617:-	SLCO6A1	solute carrier organic anion transporter family member 6A1	protein coding gene	no	ENST00000506729.5;ENST00000379807.7;ENST00000389019.7;ENST00000514551.5	1.125	0.000	0.680	0.002(19)	0(0)	0.006(100)	non tumor-specific	exon_skip	yes
UN_SYN1_LS0083	chrX:47607198|47613957:-	SYN1	synapsin I	protein coding gene	no	.	1.685	0.193	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SGMS2_LS0009	chr4:107825809|107828229:+	SGMS2	sphingomyelin synthase 2	protein coding gene	no	.	0.999	0.666	0.000	0.007(63)	0.044(31)	0(0)	non tumor-specific	exon_skip	no
UN_GK5_LS0047	chr3:142215688|142225309:-	GK5	glycerol kinase 5	protein coding gene	no	.	0.912	0.051	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LARP1_LS013	chr5:154793723|154793800:+	LARP1	La ribonucleoprotein 1, translational regulator	protein coding gene	no	ENST00000336314.8;ENST00000518297.5;ENST00000521577.1;ENST00000519931.5;ENST00000524248.5;ENST00000518194.1	21.255	14.029	30.835	0.959(9187)	0.98(688)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
ADCY10P1_LS012	chr6:41118184|41118954:+	ADCY10P1	ADCY10 pseudogene 1	pseudogene	no	ENST00000457653.8	3.372	0.438	1.848	0.017(165)	0.021(15)	0.764(13277)	non tumor-specific	nAS	yes
UN_HEATR3_LS0017	chr16:50076089|50078741:+	HEATR3	HEAT repeat containing 3	protein coding gene	no	.	1.856	0.281	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ABCC8_LS002	chr11:17393212|17393697:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000525022.1	0.156	0.069	0.898	0.094(903)	0.083(58)	0.025(429)	non tumor-specific	alt_3prime	yes
NPHP3-ACAD11_LS005	chr3:132577015|132578796:-	NPHP3-ACAD11	NPHP3-ACAD11 readthrough (NMD candidate)	protein coding gene	no	ENST00000471702.2	20.925	24.524	52.212	0.972(9313)	0.99(695)	0.978(17001)	non tumor-specific	nAS	yes
BLM_LS026	chr15:90808941|90809137:+	BLM	BLM RecQ like helicase	protein coding gene	yes	ENST00000560821.1	0.037	0.121	0.891	0.272(2608)	0.148(104)	0.106(1847)	non tumor-specific	nAS	yes
PI4KA_LS060	chr22:20803320|20804300:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000485963.5	39.070	37.088	26.812	0.931(8921)	0.986(692)	0.979(17010)	non tumor-specific	nAS	yes
AP001442.1_LS005	chr21:25935048|25941308:+	AP001442.1	-	lncRNA gene	no	ENST00000600590.1	2.129	0.000	0.830	0(3)	0(0)	0(1)	non tumor-specific	nAS	yes
DOCK7_LS049	chr1:62555989|62558989:-	DOCK7	dedicator of cytokinesis 7	protein coding gene	no	ENST00000251157.10;ENST00000454575.6;ENST00000340370.10;ENST00000634264.1;ENST00000635123.1;ENST00000635253.1;ENST00000637208.1;ENST00000634929.1;ENST00000634652.1	3.127	1.857	6.444	0.833(7985)	0.93(653)	0.916(15930)	non tumor-specific	nAS	yes
AC098798.1_LS002	chr4:110513539|110515695:-	AC098798.1	-	lncRNA gene	no	ENST00000503998.1	2.323	0.000	0.687	0.002(18)	0(0)	0.015(267)	non tumor-specific	nAS	yes
C1orf198_LS007	chr1:230868402|230868812:-	C1orf198	chromosome 1 open reading frame 198	protein coding gene	no	ENST00000470540.5	0.611	0.424	1.050	0.066(632)	0.104(73)	0.409(7105)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF546_LS006	chr19:39997915|40006096:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000599504.5;ENST00000601138.5	0.547	0.536	0.850	0.285(2733)	0.494(347)	0.417(7250)	non tumor-specific	exon_skip	yes
UN_DPY30_LS0024	chr2:31943383|32010994:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	.	1.433	0.204	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	nAS	no
SLC5A6_LS023	chr2:27206942|27207258:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	ENST00000310574.7;ENST00000488743.6;ENST00000408041.5;ENST00000445802.5;ENST00000412471.5;ENST00000401463.5;ENST00000432106.5	19.384	8.472	27.088	0.97(9290)	0.986(692)	0.978(16991)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MT-TQ_UP_LS0427	chrM:4931|6220:-	MT-TQ	mitochondrially encoded tRNA-Gln (CAA/G)	small non-coding RNA gene	no	.	65.727	11.720	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
RREB1_LS012	chr6:7181246|7187434:+	RREB1	ras responsive element binding protein 1	protein coding gene	no	.;.	2.308	0.327	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SSX1_LS0003	chrX:48255432|48256933:+	SSX1	SSX family member 1	protein coding gene	yes	.	3.831	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DEUP1_LS0024	chr11:93397350|93408231:+	DEUP1	deuterosome assembly protein 1	protein coding gene	no	.	2.773	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004980.1_LS0019	chr7:76551522|76621116:+	AC004980.1	-	pseudogene	no	.	2.713	0.748	0.000	0.035(332)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_CRELD1_LS0035	chr3:9943515|9943890:+	CRELD1	cysteine rich with EGF like domains 1	protein coding gene	no	.	4.243	0.994	0.000	0.013(120)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MTMR1_LS014	chrX:150712970|150714479:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000436701.5	0.533	0.312	0.873	0.016(149)	0.011(8)	0.071(1242)	non tumor-specific	exon_skip;mutex_exons	yes
AKT2_LS073	chr19:40282444|40282708:-	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	ENST00000423127.5;ENST00000581582.1	0.482	0.190	1.208	0.361(3456)	0.356(250)	0.571(9922)	non tumor-specific	exon_skip;intron_retention	yes
LIG3_LS022	chr17:34997825|34998219:+	LIG3	DNA ligase 3	protein coding gene	no	ENST00000378526.8;ENST00000262327.9;ENST00000586058.1;ENST00000586119.1;ENST00000378526.8;ENST00000262327.9;ENST00000586058.1;ENST00000586119.1	17.122	9.587	16.502	0.988(9467)	0.994(698)	0.978(17000)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ING4_LS0003	chr12:6650906|6650991:+	ING4	inhibitor of growth family member 4	protein coding gene	yes	.	3.484	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00017_UP_LS0147	chr17:49122462|49123778:-	RF00017	-	small non-coding RNA gene	no	.	11.788	0.817	0.000	0.012(117)	0.027(19)	0(0)	non tumor-specific	nAS	no
CSE1L_LS021	chr20:49090839|49090937:+	CSE1L	chromosome segregation 1 like	protein coding gene	no	ENST00000396192.7;ENST00000262982.2;ENST00000469700.1	210.876	76.151	61.526	0.996(9542)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_KLHDC4_LS0052	chr16:87711443|87714492:-	KLHDC4	kelch domain containing 4	protein coding gene	no	.	1.378	0.183	0.000	0.013(121)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_AC092164.1_UP_LS0005	chr2:28747982|28748820:-	AC092164.1	-	lncRNA gene	no	.	2.753	0.781	0.000	0.108(1035)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_RECQL5_LS0029	chr17:75633345|75651186:-	RECQL5	RecQ like helicase 5	protein coding gene	no	.	1.242	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPHK2_LS0024	chr19:48628961|48628988:-	SPHK2	sphingosine kinase 2	protein coding gene	no	.	2.020	0.102	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRIM35_LS0008	chr8:27298559|27304761:-	TRIM35	tripartite motif containing 35	protein coding gene	yes	.	0.808	0.373	0.000	0.034(330)	0.054(38)	0(0)	non tumor-specific	exon_skip	no
UN_OPTC_LS0008	chr1:203505219|203505333:-	OPTC	opticin	protein coding gene	no	.	1.980	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UGGT1_LS0039	chr2:128185447|128193537:+	UGGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein coding gene	no	.	2.962	1.654	0.000	0.253(2420)	0.256(180)	0(0)	non tumor-specific	nAS	no
UN_IGDCC4_LS0012	chr15:65411370|65421946:-	IGDCC4	immunoglobulin superfamily DCC subclass member 4	protein coding gene	no	.	0.961	0.299	0.000	0.021(197)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_FAM90A1_LS0004	chr12:8226028|8226309:+	FAM90A1	family with sequence similarity 90 member A1	protein coding gene	no	.	2.462	0.061	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNLS_LS003	chr10:88314641|88362552:-	RNLS	renalase, FAD dependent amine oxidase	protein coding gene	no	ENST00000371947.7;ENST00000331772.8;ENST00000466945.5	14.950	15.237	8.557	0.91(8718)	0.987(693)	0.967(16810)	non tumor-specific	exon_skip	yes
UN_IGLV1-40_UP_LS0006	chr22:22381102|22404477:+	IGLV1-40	immunoglobulin lambda variable 1-40	no	no	.	73.473	5.593	0.000	0.012(112)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_AC241952.1_LS0036	chr1:120519821|120520564:-	AC241952.1	-	pseudogene	no	.	0.864	0.181	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
TDRD10_LS013	chr1:154540232|154542024:+	TDRD10	tudor domain containing 10	protein coding gene	no	.;.	0.810	1.420	0.000	0.002(18)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ASH2L_LS0034	chr8:38140237|38140856:+	ASH2L	ASH2 like, histone lysine methyltransferase complex subunit	protein coding gene	no	.	6.428	3.292	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
RRBP1_LS058	chr20:17659058|17659118:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.	8.089	8.206	0.000	0.017(159)	0.033(23)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PPA1_LS006	chr10:70209685|70213463:-	PPA1	inorganic pyrophosphatase 1	protein coding gene	no	ENST00000373232.7	405.535	226.581	214.486	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
HNRNPDL_LS014	chr4:82426129|82427190:-	HNRNPDL	heterogeneous nuclear ribonucleoprotein D like	protein coding gene	no	ENST00000614627.4;ENST00000614627.4	0.433	0.496	10.370	0.722(6916)	0.724(508)	0.972(16900)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CREBBP_LS0094	chr16:3850698|3850753:+	CREBBP	CREB binding protein	protein coding gene	yes	.	2.350	0.432	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
MBNL2_LS008	chr13:97347067|97357482:+	MBNL2	muscleblind like splicing regulator 2	protein coding gene	no	ENST00000397601.5;ENST00000376673.7;ENST00000343600.8;ENST00000345429.10	24.946	31.185	21.440	0.936(8970)	0.986(692)	0.971(16882)	non tumor-specific	exon_skip	yes
TMEM109_LS004	chr11:60922641|60922744:+	TMEM109	transmembrane protein 109	protein coding gene	no	ENST00000540280.1	3.949	3.955	4.166	0.839(8034)	0.849(596)	0.924(16069)	non tumor-specific	intron_retention	yes
MED28_LS007	chr4:17625845|17628006:+	MED28	mediator complex subunit 28	protein coding gene	no	ENST00000503945.2	1.002	0.620	1.442	0.527(5045)	0.497(349)	0.727(12630)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
TMEM86A_LS001	chr11:18693377|18700933:+	TMEM86A	transmembrane protein 86A	protein coding gene	no	ENST00000527002.5	0.103	0.014	0.635	0.068(655)	0.06(42)	0.012(214)	non tumor-specific	nAS	yes
UN_PPP1R10_LS0025	chr6:30602292|30602383:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	.	6.738	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	intron_retention	no
SPACA1_LS006	chr6:88059588|88064099:+	SPACA1	sperm acrosome associated 1	protein coding gene	no	ENST00000237201.1	3.794	0.000	0.720	0.002(23)	0(0)	0.028(485)	non tumor-specific	alt_3prime	yes
CFH_LS022	chr1:196737660|196740619:+	CFH	complement factor H	protein coding gene	no	ENST00000367429.8;ENST00000466229.5;ENST00000470918.1	107.777	136.520	61.296	0.976(9347)	0.996(699)	0.96(16685)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PYGO2_LS0008	chr1:154957274|154957351:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	2.841	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
CNTNAP1_LS007	chr17:42687046|42687720:+	CNTNAP1	contactin associated protein 1	protein coding gene	no	ENST00000264638.8;ENST00000591662.1	3.242	6.854	5.130	0.61(5843)	0.634(445)	0.89(15466)	non tumor-specific	intron_retention	yes
UBE4B_LS032	chr1:10158482|10161142:+	UBE4B	ubiquitination factor E4B	protein coding gene	yes	ENST00000253251.12;ENST00000343090.10;ENST00000488228.1	53.233	38.203	35.901	0.99(9487)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip	yes
CSF2RA_LS016	chrX:1288888|1290337:+	CSF2RA	colony stimulating factor 2 receptor subunit alpha	protein coding gene	no	ENST00000381529.8;ENST00000501036.7;ENST00000417535.7;ENST00000381524.8;ENST00000493312.6;ENST00000412290.6;ENST00000432318.8;ENST00000381509.8;ENST00000355805.7;ENST00000486791.6;ENST00000355432.8;ENST00000381500.6	10.992	5.132	4.116	0.842(8069)	0.89(625)	0.852(14801)	non tumor-specific	alt_3prime	yes
CPO_LS008	chr2:206968347|206969174:+	CPO	coproporphyrinogen oxidase	protein coding gene	no	ENST00000272852.3	2.996	25.341	2.309	0.081(774)	0.152(107)	0.761(13233)	non tumor-specific	nAS	yes
UN_MADD_LS0044	chr11:47315327|47321811:+	MADD	MAP kinase activating death domain	protein coding gene	yes	.	1.392	0.148	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ARFGAP1_LS0007	chr20:63277994|63278117:+	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	.	1.552	0.113	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ECEL1_LS003	chr2:232480813|232481091:-	ECEL1	endothelin converting enzyme like 1	protein coding gene	no	ENST00000482346.1;ENST00000304546.5;ENST00000409941.1	10.575	2.626	2.430	0.372(3562)	0.289(203)	0.653(11353)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ESRP2_LS0011	chr16:68230480|68230841:-	ESRP2	epithelial splicing regulatory protein 2	protein coding gene	no	.	6.107	0.697	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TXN2_LS0066	chr22:36480824|36481555:+	TXN2	thioredoxin 2	protein coding gene	no	.	0.615	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ABCB8_LS036	chr7:151036170|151036544:+	ABCB8	ATP binding cassette subfamily B member 8	protein coding gene	no	ENST00000542328.5;ENST00000358849.8;ENST00000482309.5;ENST00000470645.5;ENST00000297504.10;ENST00000466514.5;ENST00000498578.5;ENST00000477719.5;ENST00000477092.5;ENST00000491920.1	51.396	26.586	24.265	0.994(9519)	0.997(700)	0.979(17017)	non tumor-specific	nAS	yes
UN_GNAI2_LS0090	chr3:50258162|50258219:-	GNAI2	G protein subunit alpha i2	protein coding gene	yes	.	1.673	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BRD3OS_LS0007	chr9:134026090|134026211:+	BRD3OS	BRD3 opposite strand	protein coding gene	no	.	1.823	0.097	0.000	0.021(200)	0.027(19)	0(0)	non tumor-specific	nAS	no
ZNF792_LS001	chr19:34959571|34960235:-	ZNF792	zinc finger protein 792	protein coding gene	no	ENST00000404801.1;ENST00000605484.1	3.938	2.118	1.969	0.791(7576)	0.866(608)	0.798(13865)	non tumor-specific	exon_skip;intron_retention	yes
UN_GNA15_LS0012	chr19:3157881|3162576:+	GNA15	G protein subunit alpha 15	protein coding gene	no	.	33.044	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POM121_LS0095	chr7:72948597|72948664:-	POM121	POM121 and ZP3 fusion	protein coding gene	no	.	3.506	0.885	0.000	0.121(1158)	0.067(47)	0(0)	non tumor-specific	nAS	no
UN_ASPM_LS0016	chr1:197097503|197100431:-	ASPM	assembly factor for spindle microtubules	protein coding gene	no	.	1.511	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CHD3_LS0079	chr17:7909338|7909505:+	CHD3	chromodomain helicase DNA binding protein 3	protein coding gene	no	.	4.766	0.762	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
CCT7_LS022	chr2:73243129|73243997:+	CCT7	chaperonin containing TCP1 subunit 7	protein coding gene	no	ENST00000469844.5;ENST00000540468.5;ENST00000539919.5;ENST00000258091.9;ENST00000461290.5;ENST00000399032.2;ENST00000409924.7;ENST00000473786.5	282.388	140.474	206.019	0.999(9568)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KCNJ18_LS001	chr17:21692714|21695983:+	KCNJ18	potassium inwardly rectifying channel subfamily J member 18	protein coding gene	no	ENST00000567955.3	0.113	0.002	0.841	0.001(11)	0.001(1)	0.003(60)	non tumor-specific	nAS	yes
UN_PLAGL2_LS0055	chr20:32196531|32196725:+	PLAGL2	PLAG1 like zinc finger 2	protein coding gene	yes	.	1.799	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4A2_LS011	chr3:186785101|186785883:+	EIF4A2	eukaryotic translation initiation factor 4A2	protein coding gene	no	ENST00000323963.9;ENST00000425053.5;ENST00000440191.6;ENST00000498746.1;ENST00000466362.1	210.188	192.026	436.423	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_RF00212_UP_LS0010	chr13:89817325|89818953:+	RF00212	-	small non-coding RNA gene	no	.	1.218	0.059	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01510_LS0003	chr7:116571230|116663739:-	LINC01510	cytosolic oncogenic antisense to MET transcript	lncRNA gene	no	.	4.342	0.778	0.000	0.007(71)	0.001(1)	0(0)	non tumor-specific	nAS	no
FBN3_LS046	chr19:8117291|8117464:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	9.244	0.949	1.259	0.14(1346)	0.199(140)	0.186(3241)	non tumor-specific	alt_5prime;exon_skip	yes
UN_S100P_LS0007	chr4:6694034|6696932:+	S100P	S100 calcium binding protein P	protein coding gene	no	.	257.714	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0423	chr14:105625857|105669607:+	AC246787.2	-	lncRNA gene	no	.	19.069	4.071	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	nAS	no
GORAB_LS004	chr1:170532284|170536310:+	GORAB	golgin, RAB6 interacting	protein coding gene	yes	.;.	1.116	0.377	0.000	0.021(199)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CBWD4P_LS007	chr9:65318560|65321193:-	CBWD4P	COBW domain containing 4, pseudogene	pseudogene	no	ENST00000445695.1	10.430	6.285	0.911	0.987(9459)	0.983(690)	0.418(7263)	non tumor-specific	nAS	yes
UN_BGN_LS0215	chrX:153508899|153508985:-	BGN	biglycan	protein coding gene	no	.	21.003	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRLS1_LS0021	chr20:6006834|6009775:+	CRLS1	cardiolipin synthase 1	protein coding gene	no	.	2.584	1.592	0.000	0.441(4221)	0.439(308)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
FHL1_LS014	chrX:136168267|136169907:+	FHL1	hemophagocytic lymphohistiocytosis 1	protein coding gene	yes	ENST00000434885.5	0.005	0.130	0.585	0.018(169)	0.041(29)	0.001(23)	non tumor-specific	alt_5prime	yes
TTC25_LS001	chr17:41930837|41935217:+	TTC25	tetratricopeptide repeat domain 25	protein coding gene	no	ENST00000593239.5;ENST00000591658.5;ENST00000377540.5	2.139	1.333	1.647	0.497(4759)	0.641(450)	0.691(12018)	non tumor-specific	nAS	yes
NPM2_LS023	chr8:22034544|22036358:+	NPM2	nucleophosmin/nucleoplasmin 2	protein coding gene	no	ENST00000519373.1	0.018	0.031	1.140	0.328(3141)	0.281(197)	0.177(3077)	non tumor-specific	alt_3prime;exon_skip	yes
CAPN2_LS007	chr1:223749122|223750890:+	CAPN2	calpain 2	protein coding gene	no	ENST00000433674.6;ENST00000295006.5	185.746	162.398	129.049	0.992(9505)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_NSD2_LS0038	chr4:1955851|1955983:+	NSD2	nuclear receptor binding SET domain protein 2	protein coding gene	no	.	2.653	1.727	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
SEPT7_LS022	chr7:35879940|35882484:+	SEPT7	septin 7	protein coding gene	no	ENST00000399034.7;ENST00000350320.10;ENST00000435235.6;ENST00000635175.1;ENST00000399035.7;ENST00000425198.1;ENST00000634591.1;ENST00000432293.2	212.904	134.471	180.977	0.992(9503)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_POU2F3_LS0038	chr11:120315427|120317260:+	POU2F3	POU class 2 homeobox 3	protein coding gene	yes	.	4.084	0.000	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAE1_LS017	chr16:66816672|66816965:-	NAE1	NEDD8 activating enzyme E1 subunit 1	protein coding gene	no	ENST00000359087.8;ENST00000290810.7;ENST00000379463.6;ENST00000394074.6;ENST00000563253.5	113.315	54.789	47.894	0.991(9499)	0.997(700)	0.978(17004)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
VPS13B_LS019	chr8:99193057|99240870:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	ENST00000521932.1	0.225	0.098	0.716	0.256(2449)	0.219(154)	0.143(2490)	non tumor-specific	nAS	yes
UN_MDGA2_LS0002	chr14:46841248|46841490:-	MDGA2	MAM domain containing glycosylphosphatidylinositol anchor 2	protein coding gene	no	.	2.835	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
HEMK1_LS026	chr3:50580229|50580381:+	HEMK1	HemK methyltransferase family member 1	protein coding gene	no	ENST00000434410.5;ENST00000232854.8;ENST00000448997.5;ENST00000455834.5;ENST00000443894.1	11.830	7.851	26.541	0.974(9334)	0.973(683)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PIGN_LS042	chr18:62138298|62138983:-	PIGN	phosphatidylinositol glycan anchor biosynthesis class N	protein coding gene	no	ENST00000639600.1;ENST00000640252.1;ENST00000639912.1;ENST00000640876.1;ENST00000357637.10;ENST00000640145.1;ENST00000638977.1;ENST00000640170.1;ENST00000638167.1;ENST00000640540.1;ENST00000639342.1;ENST00000638435.1;ENST00000639681.1;ENST00000400334.7;ENST00000639902.1;ENST00000639758.1;ENST00000638936.1;ENST00000638858.1;ENST00000638369.1;ENST00000640593.1;ENST00000640268.1;ENST00000638904.1;ENST00000638424.1;ENST00000640050.1;ENST00000638183.1;ENST00000639174.1;ENST00000639214.1;ENST00000638329.1;ENST00000589339.6;ENST00000588571.6;ENST00000589414.6;ENST00000638591.1;ENST00000586566.2;ENST00000591238.6	10.624	8.188	7.338	0.892(8542)	0.95(667)	0.961(16711)	non tumor-specific	nAS	yes
UN_AC091736.1_UP_LS0004	chr7:135662188|135672753:+	AC091736.1	-	lncRNA gene	no	.	1.443	0.381	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
DDR1_LS013	chr6:30882983|30888688:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	ENST00000418800.6	8.509	5.674	4.229	0.491(4708)	0.614(431)	0.559(9715)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRR13_LS004	chr12:53441840|53442695:+	PRR13	proline rich 13	protein coding gene	no	ENST00000551945.5	0.424	0.237	0.664	0.533(5107)	0.528(371)	0.057(995)	non tumor-specific	alt_5prime;intron_retention	yes
UN_HCFC1_LS0126	chrX:153962306|153970648:-	HCFC1	host cell factor C1	protein coding gene	no	.	0.721	0.210	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MARK2_LS0034	chr11:63904147|63904260:+	MARK2	microtubule affinity regulating kinase 2	protein coding gene	no	.	0.936	0.000	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AC010978.1_LS004	chr2:105855362|105856670:-	AC010978.1	-	lncRNA gene	no	ENST00000598281.2	0.133	0.015	0.823	0.006(55)	0.004(3)	0.007(120)	non tumor-specific	nAS	yes
LINC01358_LS013	chr1:59056749|59082568:+	LINC01358	long intergenic non-protein coding RNA 1358	lncRNA gene	no	ENST00000449812.2	0.168	0.086	0.632	0.048(456)	0.021(15)	0.023(393)	non tumor-specific	nAS	yes
UN_NPIPB5_LS0288	chr16:22535566|22535889:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	3.232	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
ELP3_LS030	chr8:28183264|28189649:+	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	ENST00000523357.5	0.274	0.171	1.219	0.803(7695)	0.818(574)	0.487(8470)	non tumor-specific	exon_skip	yes
CCDC32_LS006	chr15:40539355|40557216:-	CCDC32	coiled-coil domain containing 32	protein coding gene	no	ENST00000559911.5;ENST00000558113.5;ENST00000625629.2	0.412	0.322	1.049	0.541(5181)	0.578(406)	0.534(9277)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
GCC2_LS004	chr2:108449689|108452399:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	ENST00000478207.1;ENST00000482325.5	3.541	2.713	0.823	0.423(4053)	0.621(436)	0.369(6415)	non tumor-specific	exon_skip	yes
MTHFD1L_LS030	chr6:150985208|151009819:+	MTHFD1L	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein coding gene	no	ENST00000478643.1	0.783	0.159	1.035	0.142(1362)	0.03(21)	0.411(7141)	non tumor-specific	exon_skip;mutex_exons	yes
SDK1_LS015	chr7:3987322|4010966:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	ENST00000404826.6;ENST00000389531.7;ENST00000615806.4	6.405	2.856	2.317	0.569(5447)	0.695(488)	0.707(12287)	non tumor-specific	exon_skip	yes
EPB41L1_LS044	chr20:36194360|36197859:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	ENST00000202028.9;ENST00000373950.6;ENST00000441639.5;ENST00000628415.2;ENST00000451082.5	22.004	28.015	23.337	0.951(9114)	0.967(679)	0.94(16336)	non tumor-specific	exon_skip	yes
UN_ZSCAN5A_LS0103	chr19:56299956|56313283:-	ZSCAN5A	zinc finger and SCAN domain containing 5A	protein coding gene	no	.	1.213	0.821	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TREML4_UP_LS0012	chr6:41099910|41108305:+	TREML4	triggering receptor expressed on myeloid cells like 4	protein coding gene	no	.	2.267	0.671	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_STOX1_LS0006	chr10:68832177|68881958:+	STOX1	storkhead box 1	protein coding gene	no	.	2.178	0.018	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
TNFRSF25_LS033	chr1:6464719|6465440:-	TNFRSF25	TNF receptor superfamily member 25	protein coding gene	no	ENST00000348333.7;ENST00000502588.5;ENST00000502730.5;ENST00000515145.1	0.281	0.139	0.772	0.404(3866)	0.275(193)	0.072(1250)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGEF2_LS012	chr1:155954969|155957713:-	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000313695.11;ENST00000361247.8;ENST00000462460.6;ENST00000313667.8;ENST00000470975.2	75.590	40.441	61.475	0.989(9476)	0.987(693)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ACBD6_LS0049	chr1:180501617|180502045:-	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	.	6.572	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IPO11_LS0015	chr5:62511999|62512072:+	IPO11	importin 11	protein coding gene	no	.	5.769	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTPN14_LS0006	chr1:214350699|214359679:-	PTPN14	protein tyrosine phosphatase non-receptor type 14	protein coding gene	no	.	1.694	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
AC016757.1_LS008	chr2:238227798|238231334:-	AC016757.1	-	lncRNA gene	no	ENST00000475669.5;ENST00000409942.4;ENST00000470346.2;ENST00000466075.1;ENST00000475669.5;ENST00000409942.4;ENST00000470346.2;ENST00000466075.1	0.718	0.619	2.301	0.488(4673)	0.564(396)	0.746(12962)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LRRC40_LS014	chr1:70189273|70205390:-	LRRC40	leucine rich repeat containing 40	protein coding gene	no	ENST00000370952.3	13.465	9.683	7.277	0.905(8670)	0.97(681)	0.955(16601)	non tumor-specific	nAS	yes
UBR4_LS020	chr1:19092918|19093313:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7;ENST00000375224.1;ENST00000492606.1	78.727	53.931	103.583	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
EWSR1_LS028	chr22:29288786|29291562:+	EWSR1	EWS RNA binding protein 1	protein coding gene	yes	ENST00000397938.6;ENST00000332035.10;ENST00000397938.6;ENST00000332035.10	77.646	43.882	31.714	0.995(9530)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_COX10-AS1_LS0019	chr17:13790313|13880302:-	COX10-AS1	COX10 antisense RNA 1	lncRNA gene	no	.	1.882	0.460	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PDPK1_LS0012	chr16:2556186|2557703:+	PDPK1	3-phosphoinositide dependent protein kinase 1	protein coding gene	no	.	0.784	0.428	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PLEKHO1_LS0020	chr1:150157474|150159049:-	PLEKHO1	pleckstrin homology domain containing O1	protein coding gene	yes	.	1.774	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FOXC1_UP_LS0003	chr6:1602538|1606016:+	FOXC1	forkhead box C1	protein coding gene	yes	.	6.806	2.414	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_POLA1_LS0077	chrX:24990812|24995805:+	POLA1	DNA polymerase alpha 1, catalytic subunit	protein coding gene	no	.	1.899	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
ANKFY1_LS007	chr17:4172680|4173354:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	ENST00000341657.8;ENST00000648043.1;ENST00000570535.5;ENST00000574367.5;ENST00000572412.5	21.675	15.862	18.189	0.97(9296)	0.987(693)	0.978(16995)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MOB1A_LS010	chr2:74172752|74178115:-	MOB1A	MOB kinase activator 1A	protein coding gene	yes	ENST00000495286.5;ENST00000488006.1	0.288	0.142	0.829	0.557(5338)	0.551(387)	0.355(6165)	non tumor-specific	alt_3prime;exon_skip	yes
E2F4_LS008	chr16:67192870|67193422:+	E2F4	E2F transcription factor 4	protein coding gene	no	ENST00000568839.5	0.004	0.000	0.643	0.008(73)	0.001(1)	0.022(380)	non tumor-specific	alt_3prime;exon_skip	yes
INVS_LS022	chr9:100253136|100264822:+	INVS	inversin	protein coding gene	no	ENST00000262457.6;ENST00000262456.6	10.789	7.035	9.741	0.935(8954)	0.983(690)	0.974(16931)	non tumor-specific	exon_skip	yes
MEDAG_LS003	chr13:30917512|30921018:+	MEDAG	mesenteric estrogen dependent adipogenesis	protein coding gene	no	.;.	4.956	1.714	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MT-TH_UP_LS0043	chrM:6363|11226:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	1794.666	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9orf16_LS0101	chr9:128163814|128163860:-	C9orf16	chromosome 9 open reading frame 16	protein coding gene	no	.	6.603	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC079160.1_LS005	chr4:84012119|84148047:-	AC079160.1	-	lncRNA gene	no	ENST00000508406.1	0.888	0.019	0.727	0.058(560)	0.001(1)	0.032(559)	non tumor-specific	nAS	yes
GLI1_LS014	chr12:57466389|57467333:+	GLI1	GLI family zinc finger 1	protein coding gene	yes	ENST00000543426.5;ENST00000228682.6;ENST00000546141.5;ENST00000528467.1	1.795	1.303	2.498	0.301(2880)	0.393(276)	0.725(12594)	non tumor-specific	nAS	yes
C20orf194_LS021	chr20:3318400|3322217:-	C20orf194	chromosome 20 open reading frame 194	protein coding gene	no	ENST00000252032.9	8.648	9.302	11.701	0.748(7167)	0.879(617)	0.957(16642)	non tumor-specific	exon_skip	yes
SHANK3_LS007	chr22:50679428|50683340:+	SHANK3	SH3 and multiple ankyrin repeat domains 3	protein coding gene	no	ENST00000414786.6;ENST00000445220.5;ENST00000262795.5	12.047	14.740	21.620	0.763(7309)	0.919(645)	0.922(16021)	non tumor-specific	exon_skip	yes
UN_BRINP3_LS0034	chr1:190475985|190477448:-	BRINP3	BMP/retinoic acid inducible neural specific 3	protein coding gene	no	.	1.992	0.153	0.000	0.026(246)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_AC021683.2_LS0049	chr17:77561867|77561921:-	AC021683.2	-	lncRNA gene	no	.	7.814	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ABCC11_LS024	chr16:48211199|48213443:-	ABCC11	ATP binding cassette subfamily C member 11	protein coding gene	no	ENST00000353782.9;ENST00000356608.6;ENST00000394747.5;ENST00000394748.5;ENST00000567385.5	5.867	1.048	0.933	0.107(1028)	0.141(99)	0.226(3931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FAM3D-AS1_LS0003	chr3:58613149|58639152:+	FAM3D-AS1	FAM3D antisense RNA 1	lncRNA gene	no	.	1.930	0.140	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM159_LS010	chr16:21161278|21170437:+	TMEM159	transmembrane protein 159	protein coding gene	no	ENST00000233047.8;ENST00000572258.5;ENST00000574092.1;ENST00000261388.7;ENST00000572599.5	31.161	23.160	46.114	0.974(9329)	0.97(681)	0.973(16918)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF121_LS002	chr19:9567109|9567648:-	ZNF121	zinc finger protein 121	protein coding gene	no	ENST00000586602.5;ENST00000591447.1	0.439	0.283	0.929	0.619(5931)	0.65(456)	0.4(6956)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CLN6_LS016	chr15:68218650|68229502:-	CLN6	CLN6 transmembrane ER protein	protein coding gene	no	ENST00000249806.10;ENST00000638076.1;ENST00000567060.5;ENST00000566347.5;ENST00000637494.1;ENST00000636212.1;ENST00000637823.1;ENST00000637667.1;ENST00000564752.1;ENST00000636020.1	16.650	6.431	10.392	0.977(9362)	0.99(695)	0.975(16949)	non tumor-specific	nAS	yes
ATP13A2_LS029	chr1:17000312|17000400:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000463860.5;ENST00000617114.4;ENST00000510069.5;ENST00000511957.5;ENST00000508222.5	34.255	22.150	27.899	0.98(9386)	0.967(679)	0.979(17014)	non tumor-specific	nAS	yes
MYO5A_LS011	chr15:52337884|52340196:-	MYO5A	myosin VA	protein coding gene	no	ENST00000553916.5;ENST00000399228.5;ENST00000568914.1	2.433	0.987	4.424	0.702(6726)	0.789(554)	0.906(15753)	non tumor-specific	exon_skip	yes
SYCP2_LS052	chr20:59912418|59914109:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	.;.	1.043	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZYG11A_LS013	chr1:52877969|52881471:+	ZYG11A	zyg-11 family member A, cell cycle regulator	protein coding gene	no	ENST00000612017.4;ENST00000371532.5;ENST00000371528.1	4.082	1.298	0.981	0.245(2349)	0.261(183)	0.144(2499)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CABCOCO1_UP_LS0002	chr10:61482825|61482922:+	CABCOCO1	ciliary associated calcium binding coiled-coil 1	protein coding gene	no	.	2.311	0.218	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
CA5BP1_LS002	chrX:15675024|15675690:+	CA5BP1	carbonic anhydrase 5B pseudogene 1	pseudogene	no	ENST00000448692.5	0.300	0.176	0.704	0.206(1976)	0.218(153)	0.208(3609)	non tumor-specific	nAS	yes
UN_UBA7_LS0023	chr3:49809483|49809542:-	UBA7	ubiquitin like modifier activating enzyme 7	protein coding gene	no	.	5.842	0.863	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_SLC4A11_LS0001	chr20:3227856|3228249:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	.	26.713	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_DDX11L2_LS0003	chr2:113600214|113600718:-	DDX11L2	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudogene	no	.	1.178	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AL358234.1_LS002	chr10:28436221|28495721:-	AL358234.1	-	lncRNA gene	no	ENST00000421132.1	0.609	0.170	0.684	0.025(235)	0.047(33)	0.028(486)	non tumor-specific	nAS	yes
DARS2_LS014	chr1:173840973|173856666:+	DARS2	aspartyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000647788.1	3.015	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	exon_skip	yes
CDH6_LS013	chr5:31317492|31317673:+	CDH6	cadherin 6	protein coding gene	no	ENST00000514738.5;ENST00000265071.2;ENST00000504835.1	22.500	8.001	5.011	0.797(7632)	0.842(591)	0.838(14572)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02015_LS0024	chr3:177895776|177899011:+	LINC02015	long intergenic non-protein coding RNA 2015	lncRNA gene	no	.	3.372	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAP2K5_LS0041	chr15:67749978|67766722:+	MAP2K5	mitogen-activated protein kinase kinase 5	protein coding gene	no	.	1.857	0.236	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_PRKCA_LS0058	chr17:66788979|66791195:+	PRKCA	protein kinase C alpha	protein coding gene	yes	.	2.123	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UBE2B_LS018	chr5:134389052|134390225:+	UBE2B	ubiquitin conjugating enzyme E2 B	protein coding gene	no	ENST00000506787.5	0.132	0.072	1.340	0.673(6444)	0.556(390)	0.554(9625)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TLE6_LS0005	chr19:2983314|2986829:+	TLE6	TLE family member 6, subcortical maternal complex member	protein coding gene	no	.	1.735	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL450345.1_UP_LS0026	chr6:164184659|164229503:+	AL450345.1	-	lncRNA gene	no	.	1.315	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
DLEU1-AS1_LS002	chr13:50526007|50527279:-	DLEU1-AS1	DLEU1 antisense RNA 1	lncRNA gene	no	ENST00000428276.1	0.716	0.089	0.704	0.02(193)	0.009(6)	0.065(1128)	non tumor-specific	nAS	yes
UN_AC244102.1_UP_LS0010	chrX:152714682|152735148:+	AC244102.1	-	lncRNA gene	no	.	2.203	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SVIL_LS036	chr10:29524715|29526961:-	SVIL	supervillin	protein coding gene	no	ENST00000355867.8	0.618	8.187	4.625	0.223(2133)	0.627(440)	0.8(13912)	non tumor-specific	exon_skip	yes
PTAR1_LS007	chr9:69718684|69723326:-	PTAR1	protein prenyltransferase alpha subunit repeat containing 1	protein coding gene	no	ENST00000377200.9;ENST00000415701.6;ENST00000340434.4	9.471	6.544	6.730	0.901(8636)	0.97(681)	0.931(16178)	non tumor-specific	alt_3prime;exon_skip	yes
OTOS_LS001	chr2:240139354|240140062:-	OTOS	otospiralin	protein coding gene	no	ENST00000391989.6;ENST00000319460.1	5.843	10.491	9.641	0.151(1445)	0.113(79)	0.252(4387)	non tumor-specific	exon_skip	yes
MORC3_LS003	chr21:36333718|36336874:+	MORC3	MORC family CW-type zinc finger 3	protein coding gene	no	ENST00000492336.5;ENST00000400485.5;ENST00000485933.1	7.024	5.503	10.623	0.92(8812)	0.972(682)	0.97(16859)	non tumor-specific	exon_skip	yes
PIK3R6_LS015	chr17:8828990|8829706:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	ENST00000613555.4;ENST00000611951.4;ENST00000619866.4;ENST00000614407.1	3.152	1.087	1.818	0.374(3583)	0.234(164)	0.678(11778)	non tumor-specific	alt_5prime	yes
SPTBN1_LS031	chr2:54649989|54653609:+	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	ENST00000356805.8;ENST00000615901.4;ENST00000333896.5	229.602	238.047	179.543	0.993(9518)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
MIR100HG_LS050	chr11:122295005|122301325:-	MIR100HG	mir-100-let-7a-2-mir-125b-1 cluster host gene	lncRNA gene	yes	ENST00000648084.1	0.128	0.035	0.793	0.054(522)	0.137(96)	0.147(2550)	non tumor-specific	nAS	yes
AL162742.1_LS001	chr10:104323570|104323938:+	AL162742.1	-	lncRNA gene	no	ENST00000434792.1	0.748	0.110	0.923	0.022(210)	0.009(6)	0.126(2187)	non tumor-specific	nAS	yes
UN_AL671883.2_UP_LS0012	chr6:31269019|31354047:+	AL671883.2	-	pseudogene	no	.	53.270	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC105411.1_LS003	chr16:80157682|80159337:-	AC105411.1	-	lncRNA gene	no	ENST00000568776.5	4.744	0.613	0.824	0.026(248)	0.007(5)	0.211(3671)	non tumor-specific	nAS	yes
USP48_LS018	chr1:21721163|21721650:-	USP48	ubiquitin specific peptidase 48	protein coding gene	no	ENST00000374732.7	0.770	0.457	10.868	0.9(8620)	0.906(636)	0.977(16976)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HS1BP3_LS0010	chr2:20592817|20593109:-	HS1BP3	HCLS1 binding protein 3	protein coding gene	no	.	2.643	1.852	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_C14orf119_UP_LS0001	chr14:23058042|23058285:+	C14orf119	chromosome 14 open reading frame 119	protein coding gene	no	.	2.206	0.252	0.000	0.018(170)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02038_UP_LS0011	chr3:193852617|193868965:-	LINC02038	long intergenic non-protein coding RNA 2038	lncRNA gene	no	.	1.199	0.193	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
DCAF6_LS006	chr1:167951861|167974830:+	DCAF6	DDB1 and CUL4 associated factor 6	protein coding gene	no	ENST00000432587.6	0.111	0.139	0.812	0.532(5098)	0.625(439)	0.278(4833)	non tumor-specific	exon_skip	yes
UN_AC243960.1_UP_LS0006	chr19:41532005|41535728:+	AC243960.1	-	lncRNA gene	no	.	1.904	0.734	0.000	0.022(213)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_UBXN11_LS0040	chr1:26297024|26297427:-	UBXN11	UBX domain protein 11	protein coding gene	no	.	3.760	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MYO16_LS0058	chr13:109189495|109201414:-	MYO16	myosin XVI	protein coding gene	no	.	3.123	0.552	0.000	0.008(75)	0.01(7)	0(0)	non tumor-specific	nAS	no
RAI1_LS002	chr17:17681793|17684065:+	RAI1	ribonuclease A family member 12 (inactive)	protein coding gene	no	.;.	1.336	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SMG1_LS0055	chr16:18860210|18860667:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	.	1.590	0.240	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
ADARB2-AS1_LS002	chr10:1526899|1556611:+	ADARB2-AS1	ADARB2 antisense RNA 1	lncRNA gene	no	ENST00000421697.2	0.848	0.081	0.758	0.07(675)	0.068(48)	0.032(561)	non tumor-specific	nAS	yes
UN_AHNAK_LS0464	chr11:62520655|62521946:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	3.340	1.566	0.000	0.006(54)	0.011(8)	0(0)	non tumor-specific	nAS	no
AASDH_LS022	chr4:56371643|56378148:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	ENST00000602986.5;ENST00000451613.5;ENST00000513376.5;ENST00000205214.10;ENST00000503808.5;ENST00000502617.1	6.185	4.801	5.851	0.868(8314)	0.959(673)	0.95(16513)	non tumor-specific	exon_skip	yes
WDR47_LS009	chr1:108986680|108991254:-	WDR47	WD repeat domain 47	protein coding gene	no	ENST00000400794.7;ENST00000369962.7;ENST00000361054.7;ENST00000369965.8;ENST00000357672.7	13.926	15.425	12.967	0.918(8795)	0.95(667)	0.974(16923)	non tumor-specific	exon_skip	yes
KLK13_LS004	chr19:51058674|51060036:-	KLK13	kallikrein related peptidase 13	protein coding gene	no	ENST00000376799.9;ENST00000156476.6;ENST00000602090.5	0.096	0.242	1.202	0.18(1728)	0.15(105)	0.089(1552)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SPIN2B_LS009	chrX:57120634|57121293:-	SPIN2B	spindlin family member 2B	protein coding gene	no	ENST00000275988.5	0.104	0.187	1.800	0.788(7554)	0.856(601)	0.796(13832)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
USP2_LS001	chr11:119356922|119357187:-	USP2	ubiquitin specific peptidase 2	protein coding gene	no	ENST00000455332.6;ENST00000260187.6;ENST00000525735.1	6.759	15.912	16.533	0.694(6645)	0.895(628)	0.921(16007)	non tumor-specific	alt_3prime	yes
UN_CNOT6L_LS0008	chr4:77740203|77742141:-	CNOT6L	CCR4-NOT transcription complex subunit 6 like	protein coding gene	no	.	0.586	0.237	0.000	0.01(95)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
HNRNPA2B1_LS010	chr7:26192315|26193251:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	.;.	85.929	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTC38_LS007	chr22:46275421|46278586:+	TTC38	tetratricopeptide repeat domain 38	protein coding gene	no	ENST00000381031.7;ENST00000421359.5;ENST00000422713.1	36.467	42.300	28.466	0.981(9398)	0.996(699)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_TRIM26_LS0017	chr6:30189194|30189418:-	TRIM26	tripartite motif containing 26	protein coding gene	no	.	1.905	3.215	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
CPEB1-AS1_LS002	chr15:82649941|82650029:+	CPEB1-AS1	CPEB1 antisense RNA 1	lncRNA gene	no	ENST00000560650.1	0.889	0.311	1.487	0.032(309)	0.009(6)	0.518(9008)	non tumor-specific	nAS	yes
ERMP1_LS011	chr9:5805785|5810011:-	ERMP1	endoplasmic reticulum metallopeptidase 1	protein coding gene	no	ENST00000462592.5;ENST00000214893.9;ENST00000339450.9;ENST00000489219.5;ENST00000487088.5	26.601	27.323	8.024	0.944(9047)	0.977(686)	0.962(16722)	non tumor-specific	exon_skip	yes
EPRS_LS026	chr1:220019079|220019988:-	EPRS	glutamyl-prolyl-tRNA synthetase 1	protein coding gene	no	ENST00000366923.7;ENST00000609181.5	74.447	42.804	31.101	0.971(9304)	0.989(694)	0.977(16981)	non tumor-specific	alt_5prime;exon_skip	yes
FANCI_LS037	chr15:89281835|89283136:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	ENST00000300027.12;ENST00000310775.11;ENST00000447611.6;ENST00000561894.1	14.090	2.768	2.314	0.899(8610)	0.759(533)	0.792(13759)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MRVI1_LS026	chr11:10630071|10631991:-	MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein coding gene	yes	ENST00000532037.5	0.058	0.034	0.689	0.007(63)	0.013(9)	0.087(1515)	non tumor-specific	exon_skip	yes
HLA-DQB1_LS016	chr6:32662248|32664798:-	HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	protein coding gene	no	ENST00000399079.7;ENST00000374943.8;ENST00000434651.6;ENST00000399084.5;ENST00000399079.7;ENST00000374943.8;ENST00000434651.6;ENST00000399084.5	274.832	175.583	33.170	0.996(9546)	0.996(699)	0.953(16565)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ST18_LS027	chr8:52206750|52212079:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000518037.5	1.556	0.046	0.943	0.026(247)	0.003(2)	0.067(1161)	non tumor-specific	exon_skip	yes
OFCC1_LS019	chr6:9840514|9841932:-	OFCC1	orofacial cleft 1 candidate 1	pseudogene	no	ENST00000469656.5	2.609	0.000	0.683	0.003(29)	0(0)	0.004(77)	non tumor-specific	exon_skip	yes
UN_ANP32A_LS0027	chr15:68784580|68787473:+	ANP32A	acidic nuclear phosphoprotein 32 family member A	protein coding gene	yes	.	12.023	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NAA60_LS0068	chr16:3486400|3486485:-	NAA60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein coding gene	no	.	2.771	0.073	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCNH6_LS009	chr17:63538264|63538410:+	KCNH6	potassium voltage-gated channel subfamily H member 6	protein coding gene	no	ENST00000456941.6;ENST00000581784.5;ENST00000583465.1;ENST00000314672.9;ENST00000583023.1	15.776	2.620	1.410	0.111(1060)	0.181(127)	0.165(2860)	non tumor-specific	nAS	yes
UN_COL4A2_LS0065	chr13:110485027|110485664:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	.	15.729	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC25A16_LS0023	chr10:68517293|68527246:-	SLC25A16	solute carrier family 25 member 16	protein coding gene	no	.	1.364	0.017	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CTF1_LS0010	chr16:30899533|30902084:+	CTF1	cardiotrophin 1	protein coding gene	no	.	4.663	0.172	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PSG8_LS0013	chr19:42775162|42790772:+	PSG8	pregnancy specific beta-1-glycoprotein 8	protein coding gene	no	.	4.084	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
CNST_LS016	chr1:246660334|246665700:+	CNST	consortin, connexin sorting protein	protein coding gene	no	ENST00000366513.8	22.430	18.534	17.235	0.94(9007)	0.98(688)	0.97(16865)	non tumor-specific	exon_skip	yes
UN_APBA2_LS0036	chr15:29108389|29113098:+	APBA2	amyloid beta precursor protein binding family A member 2	protein coding gene	no	.	4.770	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
KIF9_LS031	chr3:47277375|47282140:-	KIF9	kinesin family member 9	protein coding gene	no	.;.	2.470	0.408	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
KIAA1324_LS028	chr1:109197654|109197979:+	KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein coding gene	no	ENST00000369939.7;ENST00000457623.6;ENST00000529753.5;ENST00000527996.5;ENST00000369938.5;ENST00000369936.2	66.141	66.657	5.474	0.648(6204)	0.677(475)	0.7(12162)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLK4_LS016	chr4:127891196|127892365:+	PLK4	polo like kinase 4	protein coding gene	no	ENST00000508113.1	0.157	0.012	0.707	0.213(2044)	0.036(25)	0.092(1598)	non tumor-specific	exon_skip;intron_retention	yes
YIPF4_LS001	chr2:32278234|32290483:+	YIPF4	Yip1 domain family member 4	protein coding gene	no	ENST00000238831.8;ENST00000495355.1;ENST00000437765.1	27.477	17.263	30.591	0.928(8890)	0.94(660)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM136_LS0001	chr11:120325368|120327127:+	TMEM136	TLC domain containing 5	protein coding gene	no	.	1.144	0.391	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_IGKV2-36_UP_LS0003	chr2:89297727|89319633:-	IGKV2-36	immunoglobulin kappa variable 2-36 (pseudogene)	no	no	.	92.596	13.161	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
CRYGN_LS007	chr7:151436325|151436823:-	CRYGN	crystallin gamma N	protein coding gene	no	ENST00000462809.1	0.129	0.114	0.878	0.109(1041)	0.192(135)	0.201(3501)	non tumor-specific	nAS	yes
AP5Z1_LS032	chr7:4790887|4791115:+	AP5Z1	adaptor related protein complex 5 subunit zeta 1	protein coding gene	no	ENST00000647984.1;ENST00000348624.5;ENST00000477680.6;ENST00000649063.1;ENST00000650310.1;ENST00000648925.1;ENST00000496303.6;ENST00000649419.1;ENST00000650581.1;ENST00000648360.1;ENST00000649736.1;ENST00000469614.1;ENST00000490487.1;ENST00000648237.1	66.495	24.700	58.507	0.955(9149)	0.927(651)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PLD3_LS046	chr19:40366915|40367601:+	PLD3	phospholipase D family member 3	protein coding gene	no	ENST00000492243.1	0.681	0.509	0.706	0.006(62)	0.01(7)	0.171(2972)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AGO1_LS0016	chr1:35902079|35902204:+	AGO1	argonaute RISC component 1	protein coding gene	no	.	2.112	0.377	0.000	0.056(537)	0.023(16)	0(0)	non tumor-specific	alt_5prime	no
VPS8_LS009	chr3:184812789|184813745:+	VPS8	VPS8 subunit of CORVET complex	protein coding gene	no	ENST00000471655.1	0.125	0.005	0.624	0.002(23)	0.004(3)	0.013(229)	non tumor-specific	exon_skip	yes
RLIM_LS002	chrX:74594389|74595809:-	RLIM	ring finger protein, LIM domain interacting	protein coding gene	no	ENST00000332687.10;ENST00000349225.2	15.971	11.147	7.472	0.926(8870)	0.977(686)	0.961(16698)	non tumor-specific	nAS	yes
UN_LINGO2_LS0035	chr9:28620249|28621411:+	LINGO2	leucine rich repeat and Ig domain containing 2	protein coding gene	no	.	2.151	0.511	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0616	chr21:8401527|8445657:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	514.454	36.746	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
EDNRB-AS1_LS001	chr13:77828415|77829028:+	EDNRB-AS1	EDNRB antisense RNA 1	lncRNA gene	no	ENST00000422405.1	0.911	0.000	0.710	0(1)	0(0)	0.012(207)	non tumor-specific	nAS	yes
CEACAM22P_LS001	chr19:44538513|44539167:-	CEACAM22P	CEA cell adhesion molecule 22, pseudogene	pseudogene	no	ENST00000446628.5	4.989	0.223	0.802	0.009(87)	0.009(6)	0.151(2623)	non tumor-specific	nAS	yes
UN_KIF22_LS0044	chr16:29800048|29802848:+	KIF22	kinesin family member 22	protein coding gene	no	.	9.537	0.427	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
COL4A2_LS005	chr13:110308123|110357472:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	ENST00000400163.7;ENST00000360467.6;ENST00000649101.1;ENST00000650540.1	112.137	75.289	60.186	0.964(9232)	0.987(693)	0.947(16462)	non tumor-specific	exon_skip	yes
SEC24B_LS026	chr4:109531522|109532639:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	ENST00000504968.6;ENST00000399100.6;ENST00000265175.5	54.674	37.415	49.957	0.992(9508)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_NKILA_UP_LS0006	chr20:57580791|57580962:+	NKILA	NF-kappaB interacting lncRNA	lncRNA gene	no	.	0.815	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P3_LS0019	chr17:64751601|64751807:-	KPNA2P3	karyopherin subunit alpha 2 pseudogene 3	pseudogene	no	.	3.145	1.870	0.000	0.586(5613)	0.58(407)	0(0)	non tumor-specific	nAS	no
SENP7_LS009	chr3:101332862|101337509:-	SENP7	SUMO specific peptidase 7	protein coding gene	no	ENST00000394095.6;ENST00000394091.5;ENST00000394094.6;ENST00000314261.11;ENST00000348610.3;ENST00000394095.6;ENST00000394091.5;ENST00000394094.6;ENST00000314261.11;ENST00000348610.3	8.711	6.551	10.505	0.892(8544)	0.966(678)	0.971(16884)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SASS6_LS014	chr1:100122484|100123210:-	SASS6	SAS-6 centriolar assembly protein	protein coding gene	no	ENST00000287482.5;ENST00000462159.1	4.780	1.649	1.419	0.706(6763)	0.679(477)	0.695(12072)	non tumor-specific	exon_skip	yes
UN_NRXN2_LS0044	chr11:64668604|64669095:-	NRXN2	neurexin 2	protein coding gene	no	.	1.221	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NRBF2P2_UP_LS0001	chr3:45996035|46000913:+	NRBF2P2	nuclear receptor binding factor 2 pseudogene 2	pseudogene	no	.	3.833	0.684	0.000	0.033(317)	0.028(20)	0(0)	non tumor-specific	nAS	no
TTC7A_LS015	chr2:46978907|46993450:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	ENST00000409245.5;ENST00000319190.9;ENST00000461601.5;ENST00000394850.6;ENST00000441914.5;ENST00000409825.5;ENST00000474321.6;ENST00000491786.5	33.214	23.263	24.174	0.975(9339)	0.994(698)	0.978(17008)	non tumor-specific	exon_skip	yes
MBTPS1_LS010	chr16:84066613|84067667:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	ENST00000570064.5;ENST00000343411.7	108.313	76.670	66.300	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LRWD1_LS019	chr7:102469646|102469742:+	LRWD1	leucine rich repeats and WD repeat domain containing 1	protein coding gene	no	ENST00000292616.9;ENST00000473880.5;ENST00000468175.1	42.227	15.904	24.314	0.992(9500)	0.991(696)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TUBB_LS0207	chr6:30723992|30724083:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	4.334	0.156	0.000	0.007(68)	0.004(3)	0(0)	non tumor-specific	nAS	no
KLHL14_LS002	chr18:32677330|32680169:-	KLHL14	kelch like family member 14	protein coding gene	no	ENST00000359358.8	8.728	8.247	1.407	0.245(2350)	0.422(296)	0.424(7362)	non tumor-specific	nAS	yes
DGKI_LS038	chr7:137623554|137645472:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000453654.6;ENST00000288490.9;ENST00000446122.5;ENST00000424189.6;ENST00000614521.1	3.219	0.559	1.377	0.088(845)	0.091(64)	0.298(5187)	non tumor-specific	nAS	yes
IGHV3-36_LS001	chr14:106393128|106393186:-	IGHV3-36	immunoglobulin heavy variable 3-36 (pseudogene)	no	no	ENST00000520848.1	0.381	0.000	0.492	0.001(11)	0(0)	0(8)	non tumor-specific	nAS	yes
MPIG6B_LS005	chr6:31723986|31724142:+	MPIG6B	megakaryocyte and platelet inhibitory receptor G6b	protein coding gene	no	ENST00000460663.5;ENST00000480039.5;ENST00000375810.8;ENST00000375809.7;ENST00000649779.1;ENST00000466312.5;ENST00000471545.1;ENST00000375806.2	0.787	0.451	1.586	0.104(995)	0.195(137)	0.378(6569)	non tumor-specific	exon_skip;intron_retention	yes
TMEM175_LS022	chr4:948154|950421:+	TMEM175	transmembrane protein 175	protein coding gene	no	ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5;ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5;ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5	4.509	3.954	15.117	0.978(9373)	0.996(699)	0.978(17002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GATB_LS013	chr4:151708101|151716009:-	GATB	glutamyl-tRNA amidotransferase subunit B	protein coding gene	no	ENST00000263985.10;ENST00000515564.5;ENST00000503160.5;ENST00000505211.5;ENST00000512306.5;ENST00000515490.1	31.787	22.631	15.940	0.992(9509)	0.996(699)	0.977(16986)	non tumor-specific	exon_skip	yes
RYR2_LS074	chr1:237717368|237718462:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7;ENST00000609119.1	3.079	2.141	3.650	0.115(1102)	0.215(151)	0.654(11367)	non tumor-specific	nAS	yes
UN_LINC01423_LS0005	chr21:38328599|38332426:-	LINC01423	long intergenic non-protein coding RNA 1423	lncRNA gene	no	.	4.490	0.701	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CHD8_LS0015	chr14:21386176|21386552:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	.	1.245	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CTBP1-DT_LS0037	chr4:1254195|1254367:+	CTBP1-DT	CTBP1 divergent transcript	lncRNA gene	no	.	1.097	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PHRF1_UP_LS0001	chr11:559860|561762:+	PHRF1	PHD and ring finger domains 1	protein coding gene	no	.	10.009	2.091	0.000	0.055(523)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZMYM4_LS012	chr1:35325405|35358925:+	ZMYM4	zinc finger MYM-type containing 4	protein coding gene	no	ENST00000314607.10;ENST00000441447.1	8.820	5.713	4.376	0.853(8173)	0.933(655)	0.918(15958)	non tumor-specific	exon_skip	yes
UN_SCUBE2_LS0002	chr11:9020862|9020958:-	SCUBE2	signal peptide, CUB domain and EGF like domain containing 2	protein coding gene	yes	.	18.753	8.586	0.000	0.018(171)	0.026(18)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
LINC02448_LS002	chr12:59523983|59524061:-	LINC02448	long intergenic non-protein coding RNA 2448	lncRNA gene	no	ENST00000548613.1	4.141	0.000	0.659	0.004(36)	0(0)	0.011(191)	non tumor-specific	nAS	yes
UN_MUC1_LS0011	chr1:155186007|155186183:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	4.973	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DSCAM_LS025	chr21:40189238|40276097:-	DSCAM	DS cell adhesion molecule	protein coding gene	no	ENST00000400454.5;ENST00000617870.4;ENST00000404019.2	5.377	0.592	4.365	0.066(637)	0.007(5)	0.179(3103)	non tumor-specific	alt_5prime	yes
RPL10_LS003	chrX:154397864|154398065:+	RPL10	ribosomal protein L15	protein coding gene	yes	ENST00000479366.1	0.258	1.676	0.820	0.265(2538)	0.208(146)	0.368(6393)	non tumor-specific	alt_3prime;intron_retention	yes
GRK2_LS011	chr11:67280783|67281093:+	GRK2	G protein-coupled receptor kinase 2	protein coding gene	no	ENST00000308595.9;ENST00000526285.1	152.507	81.367	75.550	0.991(9493)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
MAST4_LS063	chr5:67162788|67163147:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11;ENST00000443808.1	9.539	8.802	11.127	0.861(8250)	0.962(675)	0.938(16299)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TYW1B_LS0008	chr7:72609733|72618834:+	TYW1B	tRNA-yW synthesizing protein 1 homolog B	protein coding gene	no	.	3.301	0.687	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPTE2P1_LS006	chr13:24940785|24941987:-	TPTE2P1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudogene	no	ENST00000649209.1;ENST00000429698.1	0.380	0.503	1.440	0.175(1679)	0.275(193)	0.384(6680)	non tumor-specific	nAS	yes
UN_SH3RF1_LS0012	chr4:169120989|169121884:-	SH3RF1	SH3 domain containing ring finger 1	protein coding gene	no	.	2.142	2.862	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ITGA7_LS0034	chr12:55698893|55699870:-	ITGA7	integrin subunit alpha 7	protein coding gene	yes	.	7.809	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ACBD4_LS026	chr17:45139160|45142583:+	ACBD4	acyl-CoA binding domain containing 4	protein coding gene	no	ENST00000619916.4;ENST00000376955.8	4.050	2.047	2.269	0.576(5518)	0.672(472)	0.862(14978)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC093833.1_UP_LS0013	chr2:45037780|45051812:+	AC093833.1	-	lncRNA gene	no	.	1.254	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC010642.2_LS001	chr19:58312288|58312970:-	AC010642.2	-	lncRNA gene	no	ENST00000634676.1	1.061	0.443	1.274	0.24(2301)	0.215(151)	0.691(12006)	non tumor-specific	nAS	yes
UN_OFCC1_LS0014	chr6:10141497|10141621:+	OFCC1	orofacial cleft 1 candidate 1	pseudogene	no	.	1.103	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BNIP3L_LS0004	chr8:26384199|26391243:+	BNIP3L	BCL2 interacting protein 3 like	protein coding gene	yes	.	1.560	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ATP6V1A_LS007	chr3:113778835|113781050:+	ATP6V1A	ATPase H+ transporting V1 subunit A	protein coding gene	no	ENST00000273398.7;ENST00000496747.5;ENST00000475322.1;ENST00000273398.7;ENST00000496747.5;ENST00000475322.1	27.212	25.652	8.376	0.944(9040)	0.976(685)	0.964(16762)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPLP0P6_LS0059	chr2:38482132|38482282:-	RPLP0P6	ribosomal protein lateral stalk subunit P0 pseudogene 6	pseudogene	no	.	6.416	0.914	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ACSM4_LS007	chr12:7322541|7323234:+	ACSM4	acyl-CoA synthetase medium chain family member 4	protein coding gene	no	ENST00000399422.4	3.293	0.320	0.654	0.001(11)	0.001(1)	0.018(320)	non tumor-specific	intron_retention	yes
UN_RAF1_LS0034	chr3:12618747|12663369:-	RAF1	ribonuclease A family member 3	protein coding gene	yes	.	10.051	0.326	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPUSD3_LS005	chr3:9840307|9840532:-	RPUSD3	RNA pseudouridine synthase D3	protein coding gene	no	ENST00000423108.5;ENST00000433535.6;ENST00000383820.9;ENST00000424438.5;ENST00000418713.5	74.480	36.413	37.548	0.996(9544)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PRKD2_LS026	chr19:46716220|46716951:-	PRKD2	protein kinase D2	protein coding gene	no	ENST00000598633.1;ENST00000598633.1	0.030	0.027	0.799	0.235(2255)	0.4(281)	0.265(4612)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
AKR1C2_LS044	chr10:5004014|5013519:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.;.	1.151	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC005042.2_LS002	chr2:158690956|158753635:+	AC005042.2	-	lncRNA gene	no	ENST00000449526.1	0.784	0.053	0.692	0.006(55)	0.001(1)	0.008(145)	non tumor-specific	nAS	yes
UN_AL445487.1_UP_LS0018	chr9:107422607|107448378:-	AL445487.1	-	pseudogene	no	.	3.389	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC055717.2_LS0024	chr12:130042257|130043919:-	AC055717.2	-	lncRNA gene	no	.	1.504	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
CACNB3_LS017	chr12:48818558|48823344:+	CACNB3	calcium voltage-gated channel auxiliary subunit beta 3	protein coding gene	no	ENST00000547818.5	0.033	0.017	0.738	0.306(2934)	0.283(199)	0.257(4467)	non tumor-specific	alt_5prime	yes
UN_CD276_LS0101	chr15:73713220|73713313:-	CD276	CD276 molecule	protein coding gene	no	.	3.821	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR61_LS003	chr15:78278301|78288289:-	WDR61	WD repeat domain 61	protein coding gene	no	ENST00000558453.5	0.360	0.186	1.623	0.308(2953)	0.386(271)	0.661(11486)	non tumor-specific	exon_skip	yes
RPLP0_LS043	chr12:120200150|120200730:-	RPLP0	ribosomal protein lateral stalk subunit P0	protein coding gene	no	ENST00000547191.5;ENST00000547191.5	0.073	12.434	1.309	0.069(657)	0.085(60)	0.688(11966)	non tumor-specific	alt_3prime;alt_5prime	yes
LINC00968_LS004	chr8:56520567|56544079:-	LINC00968	long intergenic non-protein coding RNA 968	lncRNA gene	no	ENST00000521483.1	0.277	0.043	0.840	0.008(75)	0.093(65)	0.14(2442)	non tumor-specific	nAS	yes
PACSIN3_LS011	chr11:47182559|47183004:-	PACSIN3	protein kinase C and casein kinase substrate in neurons 3	protein coding gene	no	ENST00000530513.5;ENST00000528201.1	0.064	0.085	1.464	0.666(6384)	0.735(516)	0.65(11304)	non tumor-specific	exon_skip	yes
UN_GUCY1B1_LS0017	chr4:155802585|155803630:+	GUCY1B1	guanylate cyclase 1 soluble subunit beta 1	protein coding gene	no	.	7.703	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
FAM234B_LS015	chr12:13076143|13141481:+	FAM234B	family with sequence similarity 234 member B	protein coding gene	no	ENST00000537625.1	0.112	0.077	0.621	0.061(589)	0.078(55)	0.024(421)	non tumor-specific	nAS	yes
UN_KANK1_LS0022	chr9:504243|539516:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	0.623	0.133	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
PEMT_LS011	chr17:17509545|17576920:-	PEMT	phosphatidylethanolamine N-methyltransferase	protein coding gene	no	ENST00000580147.5	0.785	0.570	0.638	0.867(8303)	0.88(618)	0.082(1422)	non tumor-specific	exon_skip	yes
UN_SLC39A7_LS0046	chr6:33203637|33203677:+	SLC39A7	solute carrier family 39 member 7	protein coding gene	no	.	30.651	2.868	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_CWC15_LS0005	chr11:94972193|94972886:-	CWC15	CWC15 spliceosome associated protein homolog	protein coding gene	no	.	3.530	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip	no
HMCN1_LS075	chr1:186114123|186114819:+	HMCN1	hemicentin 1	protein coding gene	no	ENST00000271588.8	3.926	2.070	2.171	0.347(3325)	0.536(376)	0.621(10789)	non tumor-specific	nAS	yes
RPS6KA2_LS004	chr6:166419958|166423256:-	RPS6KA2	ribosomal protein S6 kinase A2	protein coding gene	yes	ENST00000265678.8;ENST00000510118.5;ENST00000503859.5;ENST00000509742.1;ENST00000481261.6;ENST00000405189.7	27.363	37.186	32.334	0.934(8947)	0.987(693)	0.974(16922)	non tumor-specific	exon_skip	yes
UN_PCIF1_LS0059	chr20:45947741|45947779:-	PCIF1	PDX1 C-terminal inhibiting factor 1	protein coding gene	no	.	2.068	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
HLA-DQA1_LS004	chr6:32637540|32638912:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	ENST00000482745.5	0.006	0.005	0.718	0.047(453)	0.054(38)	0.05(866)	non tumor-specific	exon_skip	yes
ZNF436_LS003	chr1:23367168|23369366:-	ZNF436	zinc finger protein 436	protein coding gene	no	.;.	1.330	0.863	0.000	0.147(1412)	0.226(159)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SLC26A7_LS028	chr8:91394039|91394218:+	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	ENST00000309536.6	3.197	3.152	1.956	0.066(632)	0.268(188)	0.09(1558)	non tumor-specific	alt_3prime	yes
UN_EXOC3L4_LS0021	chr14:103107543|103107634:+	EXOC3L4	exocyst complex component 3 like 4	protein coding gene	no	.	9.134	3.122	0.000	0.003(25)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MLF1_LS020	chr3:158593426|158596862:+	MLF1	myeloid leukemia factor 1	protein coding gene	no	ENST00000619577.4;ENST00000477042.5;ENST00000471745.5;ENST00000478894.6;ENST00000466246.5;ENST00000392822.4	0.334	3.701	15.852	0.008(80)	0.031(22)	0.156(2708)	non tumor-specific	alt_5prime;exon_skip	yes
TNXA_LS005	chr6:32009872|32009965:-	TNXA	tenascin XA (pseudogene)	pseudogene	no	ENST00000507684.1	15.012	27.744	0.960	0.582(5574)	0.899(631)	0.337(5851)	non tumor-specific	nAS	yes
UN_SLC12A8_LS0032	chr3:125110372|125110412:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	.	23.490	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RPLP2_LS001	chr11:810039|810234:+	RPLP2	ribosomal protein lateral stalk subunit P2	protein coding gene	no	ENST00000321153.8	1265.228	735.656	3548.567	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LAT2_LS001	chr7:74199685|74209931:+	LAT2	solute carrier family 7 member 8	protein coding gene	yes	ENST00000465116.5	0.211	0.037	0.703	0.085(814)	0.074(52)	0.111(1922)	non tumor-specific	nAS	yes
CEBPZ_LS011	chr2:37216208|37216316:-	CEBPZ	CCAAT enhancer binding protein zeta	protein coding gene	no	ENST00000234170.9	89.173	50.971	43.495	0.996(9540)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime	yes
TRPM6_LS037	chr9:74842343|74855527:-	TRPM6	transient receptor potential cation channel subfamily M member 6	protein coding gene	no	ENST00000361255.7;ENST00000449912.6;ENST00000360774.5;ENST00000359047.2	2.562	1.957	0.894	0.025(238)	0.181(127)	0.296(5143)	non tumor-specific	nAS	yes
UN_LDOC1_LS0026	chrX:141176408|141176676:-	LDOC1	LDOC1 regulator of NFKB signaling	protein coding gene	no	.	6.758	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
CSMD2_LS011	chr1:33537609|33540525:-	CSMD2	CUB and Sushi multiple domains 2	protein coding gene	no	ENST00000373381.8;ENST00000373388.6;ENST00000619121.4;ENST00000241312.8	3.132	0.440	1.383	0.108(1039)	0.01(7)	0.406(7065)	non tumor-specific	nAS	yes
UN_MEGF6_LS0045	chr1:3505304|3505422:-	MEGF6	multiple EGF like domains 6	protein coding gene	no	.	5.396	0.690	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SCUBE1_LS001	chr22:43204149|43207534:-	SCUBE1	signal peptide, CUB domain and EGF like domain containing 1	protein coding gene	no	ENST00000360835.8	4.485	2.882	5.018	0.186(1778)	0.651(457)	0.751(13046)	non tumor-specific	alt_5prime;exon_skip	yes
ABCA9_LS008	chr17:68986324|68989027:-	ABCA9	ATP binding cassette subfamily A member 9	protein coding gene	no	ENST00000340001.8;ENST00000453985.6	3.459	4.129	16.830	0.219(2094)	0.671(471)	0.935(16258)	non tumor-specific	exon_skip	yes
AL078612.2_LS001	chr11:32132786|32137121:+	AL078612.2	-	lncRNA gene	no	ENST00000525133.1	1.676	0.000	2.076	0.008(77)	0(0)	0.012(210)	non tumor-specific	nAS	yes
EGFR_LS031	chr7:55198863|55200316:+	EGFR	epidermal growth factor receptor	protein coding gene	yes	ENST00000455089.5;ENST00000454757.6;ENST00000275493.6;ENST00000638463.1;ENST00000485503.1	35.704	27.189	18.397	0.887(8494)	0.983(690)	0.923(16035)	non tumor-specific	alt_5prime	yes
UN_DUSP23_LS0010	chr1:159781242|159781266:-	DUSP23	protein tyrosine phosphatase mitochondrial 1	protein coding gene	no	.	4.313	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012363.1_LS0007	chr2:120180241|120216340:-	AC012363.1	-	lncRNA gene	no	.	2.258	0.249	0.000	0.016(158)	0.004(3)	0(0)	non tumor-specific	nAS	no
POLK_LS011	chr5:75552591|75569340:+	POLK	terminal nucleotidyltransferase 4A	protein coding gene	no	ENST00000241436.8;ENST00000503479.6;ENST00000506928.5;ENST00000514296.5;ENST00000508867.5;ENST00000515295.5;ENST00000514141.5;ENST00000504026.5;ENST00000508526.5;ENST00000509126.2	8.064	6.190	10.504	0.874(8372)	0.964(677)	0.963(16738)	non tumor-specific	alt_3prime;exon_skip	yes
KLF4_LS006	chr9:107489050|107489168:-	KLF4	Kruppel like factor 4	protein coding gene	yes	ENST00000493306.1;ENST00000374672.4;ENST00000610832.1;ENST00000420475.1	20.266	47.718	39.175	0.91(8716)	0.98(688)	0.967(16801)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MRPS23_LS0012	chr17:57846221|57846313:-	MRPS23	mitochondrial ribosomal protein S23	protein coding gene	no	.	14.929	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZMYND11_LS014	chr10:236915|239438:+	ZMYND11	zinc finger MYND-type containing 11	protein coding gene	yes	ENST00000397959.7;ENST00000402736.5;ENST00000602682.5	0.442	0.569	1.657	0.541(5188)	0.755(530)	0.624(10847)	non tumor-specific	alt_3prime;exon_skip	yes
CAPN3_LS009	chr15:42394341|42396800:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000357568.7;ENST00000349748.7;ENST00000397163.7;ENST00000638141.1	2.938	1.714	17.603	0.574(5498)	0.711(499)	0.977(16988)	non tumor-specific	alt_5prime;exon_skip	yes
UN_INTS1_LS0071	chr7:1483853|1483951:-	INTS1	integrator complex subunit 1	protein coding gene	yes	.	2.937	0.677	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_CCDC8_LS0016	chr19:46411652|46411797:-	CCDC8	coiled-coil domain containing 8	protein coding gene	no	.	12.912	2.592	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
WISP1_LS005	chr8:133213120|133225390:+	WISP1	cellular communication network factor 4	protein coding gene	yes	.;.	2.191	0.002	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HIVEP1_LS0040	chr6:12164191|12164247:-	HIVEP1	HIVEP zinc finger 1	protein coding gene	yes	.	2.209	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DYTN_LS005	chr2:206693323|206694766:-	DYTN	dystrotelin	protein coding gene	no	ENST00000644951.1;ENST00000452335.2	5.126	0.000	0.848	0.015(142)	0(0)	0.059(1023)	non tumor-specific	alt_3prime	yes
MLF2_LS005	chr12:6750007|6750145:-	MLF2	myeloid leukemia factor 2	protein coding gene	no	ENST00000537126.5	95.861	69.976	0.763	0.936(8967)	0.923(648)	0.253(4402)	non tumor-specific	alt_5prime	yes
MAMDC4_LS002	chr9:136851939|136852379:+	MAMDC4	MAM domain containing 4	protein coding gene	no	ENST00000485732.5	1.503	0.430	6.268	0.105(1006)	0.098(69)	0.949(16504)	non tumor-specific	alt_5prime;intron_retention	yes
GCM2_LS001	chr6:10874933|10875891:-	GCM2	glial cells missing transcription factor 2	protein coding gene	no	ENST00000379491.4	1.554	0.000	0.750	0.001(9)	0(0)	0.006(112)	non tumor-specific	nAS	yes
SEC24D_LS010	chr4:118741037|118743988:-	SEC24D	SEC24 homolog D, COPII coat complex component	protein coding gene	no	ENST00000280551.10;ENST00000505134.5;ENST00000511481.5;ENST00000514561.5;ENST00000419654.6	43.114	26.613	28.216	0.968(9278)	0.994(698)	0.974(16930)	non tumor-specific	exon_skip	yes
UN_HLA-K_LS0018	chr6:29927501|29928439:-	HLA-K	major histocompatibility complex, class I, K (pseudogene)	pseudogene	no	.	0.483	0.019	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF334_LS0027	chr20:46512566|46513497:-	ZNF334	zinc finger protein 334	protein coding gene	no	.	0.471	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_RXRA_LS0080	chr9:134433457|134434102:+	RXRA	retinoid X receptor alpha	protein coding gene	no	.	3.149	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FBXL2_LS013	chr3:33297962|33300522:+	FBXL2	F-box and leucine rich repeat protein 2	protein coding gene	no	ENST00000483037.5	0.152	0.050	0.657	0.001(12)	0.004(3)	0.025(428)	non tumor-specific	exon_skip;mutex_exons	yes
ITPR3_LS014	chr6:33665213|33665835:+	ITPR3	inositol 1,4,5-trisphosphate receptor type 3	protein coding gene	no	ENST00000374316.9;ENST00000605930.2	30.651	19.418	13.068	0.836(8007)	0.879(617)	0.938(16309)	non tumor-specific	alt_3prime	yes
RUSC1_LS002	chr1:155323130|155324845:+	RUSC1	RUN and SH3 domain containing 1	protein coding gene	no	ENST00000368354.7;ENST00000368352.9;ENST00000467820.5	1.253	3.405	3.361	0.809(7750)	0.809(568)	0.823(14301)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_COL23A1_LS0033	chr5:178261748|178263208:-	COL23A1	collagen type XXIII alpha 1 chain	protein coding gene	no	.	3.763	0.943	0.000	0.03(283)	0.043(30)	0(0)	non tumor-specific	exon_skip	no
UN_FN1_LS0112	chr2:215371978|215372024:+	FN1	fibronectin 1	protein coding gene	no	.	44.571	8.738	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CLUHP3_LS0017	chr16:31706581|31706891:+	CLUHP3	clustered mitochondria homolog pseudogene 3	pseudogene	no	.	0.413	0.099	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
SNHG14_LS023	chr15:25055230|25056483:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000547292.1	0.808	0.428	1.137	0.104(1000)	0.142(100)	0.506(8797)	non tumor-specific	nAS	yes
UN_AC010422.8_LS0042	chr19:12670306|12670676:-	AC010422.8	-	protein coding gene	no	.	3.160	0.072	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ACTB_LS0376	chr7:5528636|5529563:+	ACTB	actin beta	protein coding gene	no	.	5.679	0.972	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MS4A6A_LS0013	chr11:60181741|60182497:-	MS4A6A	membrane spanning 4-domains A6A	protein coding gene	no	.	2.822	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
RBFOX1_LS013	chr16:6654650|7052057:+	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	ENST00000641259.1;ENST00000547605.5;ENST00000553186.5;ENST00000550418.5;ENST00000547372.5;ENST00000422070.8;ENST00000535565.6;ENST00000552089.5;ENST00000551752.5	2.486	3.748	6.452	0.068(652)	0.014(10)	0.219(3808)	non tumor-specific	exon_skip	yes
UN_SEMA3B_LS0002	chr3:50267769|50268193:+	SEMA3B	semaphorin 3B	protein coding gene	yes	.	2.099	1.155	0.000	0.004(40)	0.033(23)	0(0)	non tumor-specific	nAS	no
AL109615.3_LS006	chr6:44001116|44074497:-	AL109615.3	-	lncRNA gene	no	ENST00000422059.5	0.346	0.043	0.852	0.17(1627)	0.142(100)	0.04(692)	non tumor-specific	nAS	yes
LINC02516_LS001	chr4:124500994|124504250:-	LINC02516	long intergenic non-protein coding RNA 2516	lncRNA gene	no	ENST00000563724.1	1.538	0.000	0.742	0.002(22)	0(0)	0.167(2896)	non tumor-specific	nAS	yes
LINC01225_LS004	chr1:31503188|31504128:+	LINC01225	leucine decarboxylase 1, pseudogene	pseudogene	no	ENST00000562339.5;ENST00000563550.5	2.933	0.294	0.743	0.004(40)	0.009(6)	0.02(356)	non tumor-specific	nAS	yes
UN_SESN3_UP_LS0013	chr11:95328065|95328482:-	SESN3	sestrin 3	protein coding gene	no	.	2.245	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GAPDH_LS0198	chr12:6537912|6537940:-	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	1071.884	58.172	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PAXIP1_LS0006	chr7:154944620|154945008:+	PAXIP1	PAX interacting protein 1	protein coding gene	no	.	1.794	0.620	0.000	0.052(502)	0.1(70)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SLC1A4_UP_LS0002	chr2:64867259|64882745:+	SLC1A4	solute carrier family 1 member 4	protein coding gene	no	.	2.918	0.172	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TMEM256-PLSCR3_LS0033	chr17:7393355|7393467:-	TMEM256-PLSCR3	TMEM256-PLSCR3 readthrough (NMD candidate)	protein coding gene	no	.	7.364	2.302	0.000	0.008(81)	0.01(7)	0(0)	non tumor-specific	nAS	no
LINC01018_LS005	chr5:6586027|6586228:+	LINC01018	long intergenic non-protein coding RNA 1018	lncRNA gene	no	ENST00000505626.5;ENST00000507582.1	4.452	6.079	1.666	0.295(2826)	0.588(413)	0.504(8765)	non tumor-specific	nAS	yes
ZNF141_LS006	chr4:344430|383095:+	ZNF141	zinc finger protein 141	protein coding gene	no	ENST00000505939.5	0.064	0.307	0.681	0.255(2446)	0.211(148)	0.12(2090)	non tumor-specific	exon_skip	yes
AC015468.4_LS002	chr8:20943252|20948699:+	AC015468.4	-	lncRNA gene	no	ENST00000523496.1	0.846	0.000	0.770	0.001(5)	0(0)	0.011(199)	non tumor-specific	nAS	yes
UN_AL645929.1_UP_LS0081	chr6:29889468|29944202:-	AL645929.1	-	pseudogene	no	.	45.634	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
MARCH3_LS004	chr5:126899266|126914930:-	MARCH3	membrane associated ring-CH-type finger 3	protein coding gene	no	ENST00000504239.1	0.372	0.055	0.872	0.311(2984)	0.231(162)	0.344(5977)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SEC14L1_LS0022	chr17:77147806|77190803:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	4.577	0.775	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
AC114689.3_LS001	chr18:67516749|67834419:+	AC114689.3	-	lncRNA gene	no	ENST00000583687.1	0.032	0.000	0.682	0(1)	0(0)	0.021(360)	non tumor-specific	nAS	yes
TACC2_LS011	chr10:122087959|122088478:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	ENST00000369005.5;ENST00000515273.5;ENST00000515603.5;ENST00000334433.7;ENST00000453444.6	6.593	7.831	8.875	0.474(4543)	0.813(571)	0.789(13723)	non tumor-specific	alt_5prime;exon_skip	yes
BCAR3_LS020	chr1:93674941|93706092:-	BCAR3	BCAR3 adaptor protein, NSP family member	protein coding gene	no	ENST00000370244.5	1.320	0.989	1.013	0.29(2780)	0.472(331)	0.517(8994)	non tumor-specific	exon_skip	yes
UN_SNRPE_LS0008	chr1:203865118|203869868:+	SNRPE	small nuclear ribonucleoprotein polypeptide E	protein coding gene	no	.	5.852	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
BAP1_LS009	chr3:52404586|52405110:-	BAP1	ring finger protein 2	protein coding gene	yes	ENST00000460680.5;ENST00000296288.9;ENST00000490804.1	77.437	52.886	49.663	0.994(9520)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
FBXO42_LS009	chr1:16305919|16315169:-	FBXO42	F-box protein 42	protein coding gene	no	ENST00000375592.7;ENST00000478089.1	28.324	19.878	24.914	0.983(9422)	0.993(697)	0.979(17013)	non tumor-specific	exon_skip	yes
MAN1A1_LS005	chr6:119193892|119201254:-	MAN1A1	mannosidase alpha class 1A member 1	protein coding gene	no	ENST00000368468.3	46.624	79.319	29.217	0.936(8964)	0.993(697)	0.966(16798)	non tumor-specific	exon_skip	yes
UN_HNRNPH2_LS0004	chrX:101413216|101413253:+	HNRNPH2	heterogeneous nuclear ribonucleoprotein H2	protein coding gene	no	.	33.679	12.802	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TRAC_UP_LS0013	chr14:22482346|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	3.830	1.653	0.000	0.157(1506)	0.167(117)	0(0)	non tumor-specific	nAS	no
EFHC1_LS025	chr6:52454287|52469333:+	EFHC1	EF-hand domain containing 1	protein coding gene	no	ENST00000637874.1	1.901	0.301	1.506	0.006(59)	0.001(1)	0.675(11728)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATG2B_LS0002	chr14:96285985|96288588:-	ATG2B	autophagy related 2B	protein coding gene	no	.	1.086	0.164	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DYNC2H1_LS056	chr11:103209960|103211789:+	DYNC2H1	dynein cytoplasmic 2 heavy chain 1	protein coding gene	no	ENST00000375735.6;ENST00000649997.1;ENST00000650373.1;ENST00000398093.7;ENST00000533027.1	2.552	2.735	3.088	0.61(5840)	0.781(548)	0.818(14221)	non tumor-specific	nAS	yes
CEP135_LS010	chr4:55971408|55974746:+	CEP135	centrosomal protein 135	protein coding gene	no	ENST00000257287.4;ENST00000506202.1	4.579	1.964	2.975	0.693(6644)	0.769(540)	0.865(15034)	non tumor-specific	exon_skip	yes
CRYBG1_LS003	chr6:106513039|106519131:+	CRYBG1	crystallin beta-gamma domain containing 1	protein coding gene	no	ENST00000633556.1;ENST00000369066.7	5.234	6.214	2.736	0.703(6735)	0.903(634)	0.649(11288)	non tumor-specific	nAS	yes
SORL1_LS054	chr11:121621238|121622162:+	SORL1	sortilin related receptor 1	protein coding gene	no	ENST00000260197.11;ENST00000525532.5;ENST00000532694.5;ENST00000534286.5;ENST00000527934.1;ENST00000524633.1	23.730	20.529	12.342	0.964(9237)	0.993(697)	0.935(16258)	non tumor-specific	nAS	yes
UN_AC010487.4_UP_LS0005	chr19:52884405|53134577:-	AC010487.4	-	pseudogene	no	.	3.941	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PLA1A_LS002	chr3:119597986|119608770:+	PLA1A	phospholipase A1 member A	protein coding gene	no	ENST00000488919.5	0.352	0.232	0.960	0.431(4129)	0.64(449)	0.267(4638)	non tumor-specific	alt_3prime;exon_skip	yes
NHS_LS005	chrX:17692468|17719344:+	NHS	NHS actin remodeling regulator	protein coding gene	no	ENST00000398097.7;ENST00000615422.1	1.491	0.872	1.476	0.317(3034)	0.45(316)	0.529(9191)	non tumor-specific	exon_skip	yes
C13orf46_LS004	chr13:113968514|113968595:-	C13orf46	chromosome 13 open reading frame 46	protein coding gene	no	ENST00000636427.2	2.361	0.257	0.799	0.002(15)	0.003(2)	0.239(4146)	non tumor-specific	nAS	yes
RASGRP1_LS029	chr15:38560005|38560130:-	RASGRP1	RAS guanyl releasing protein 1	protein coding gene	no	ENST00000558418.5	0.002	0.000	0.671	0.113(1085)	0.168(118)	0.002(34)	non tumor-specific	nAS	yes
SLC23A1_LS004	chr5:139378118|139378222:-	SLC23A1	solute carrier family 23 member 2	protein coding gene	no	ENST00000353963.7;ENST00000348729.7	10.277	24.790	1.744	0.279(2677)	0.48(337)	0.298(5188)	non tumor-specific	exon_skip	yes
UN_U2AF1L5_LS0007	chr21:6496080|6497180:-	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein coding gene	no	.	4.664	0.054	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
RORA_LS016	chr15:60531851|60678657:-	RORA	RAR related orphan receptor A	protein coding gene	no	ENST00000335670.10;ENST00000560004.5;ENST00000557822.5	0.277	0.299	0.984	0.216(2071)	0.419(294)	0.478(8310)	non tumor-specific	exon_skip	yes
UN_PAXBP1_LS0023	chr21:32759269|32759541:-	PAXBP1	PAX3 and PAX7 binding protein 1	protein coding gene	no	.	3.437	1.120	0.000	0.006(53)	0.024(17)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PHACTR4_LS0034	chr1:28433046|28438273:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	0.793	0.248	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
LRRC74A_LS008	chr14:76837971|76844423:+	LRRC74A	leucine rich repeat containing 74A	protein coding gene	no	ENST00000393774.7;ENST00000484640.5;ENST00000460005.1	3.043	0.000	0.688	0(1)	0(0)	0.019(336)	non tumor-specific	nAS	yes
UN_DHRS2_UP_LS0010	chr14:23627160|23627657:+	DHRS2	dehydrogenase/reductase 2	protein coding gene	no	.	0.791	0.139	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPS23P10_UP_LS0033	chr1:161544781|161626145:-	RPS23P10	ribosomal protein S23 pseudogene 10	pseudogene	no	.	12.356	5.792	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ADGRL1_LS0069	chr19:14183326|14193736:+	ADGRL1	adhesion G protein-coupled receptor L1	protein coding gene	no	.	2.216	0.326	0.000	0.008(81)	0.007(5)	0(0)	non tumor-specific	nAS	no
DNAH6_LS002	chr2:84518051|84525565:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	ENST00000476689.5;ENST00000389394.7;ENST00000468661.1;ENST00000237449.10	4.118	3.156	1.064	0.264(2526)	0.434(305)	0.371(6456)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PIK3R6_LS0015	chr17:8827291|8828112:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	.	1.946	0.239	0.000	0.013(124)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
THOC2_LS036	chrX:123624191|123624541:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000438358.1;ENST00000464161.1	25.236	12.591	24.761	0.977(9364)	0.983(690)	0.977(16984)	non tumor-specific	nAS	yes
PTHLH_LS006	chr12:27963770|27969394:-	PTHLH	parathyroid hormone like hormone	protein coding gene	no	ENST00000395872.5;ENST00000545234.5;ENST00000539239.5;ENST00000538310.1;ENST00000201015.8;ENST00000535992.5;ENST00000395868.7;ENST00000542963.1;ENST00000534890.1	16.929	4.996	3.697	0.838(8025)	0.826(580)	0.778(13522)	non tumor-specific	alt_3prime;alt_5prime	yes
HNRNPA2B1_LS030	chr7:26197732|26200572:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	ENST00000608362.2;ENST00000356674.7;ENST00000608362.2;ENST00000356674.7	945.264	474.730	428.922	0.962(9221)	0.966(678)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL096855.1_LS004	chr1:8429972|8434633:+	AL096855.1	-	lncRNA gene	no	ENST00000449895.5	0.813	0.349	0.670	0.008(76)	0.011(8)	0.092(1599)	non tumor-specific	nAS	yes
AC092573.2_LS001	chr2:173338633|173356167:-	AC092573.2	-	pseudogene	no	ENST00000437243.1	0.221	0.067	0.755	0.086(820)	0.044(31)	0.037(644)	non tumor-specific	nAS	yes
LCP1_LS025	chr13:46194105|46211732:-	LCP1	TOX high mobility group box family member 4	protein coding gene	no	.;.	0.674	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SERPINI2_LS0001	chr3:167442185|167443308:-	SERPINI2	serpin family I member 2	protein coding gene	yes	.	2.790	0.381	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NAA35_LS0013	chr9:85976835|85977363:+	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein coding gene	no	.	2.944	0.730	0.000	0.028(271)	0.014(10)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
FAM214A_LS003	chr15:52584944|52587151:-	FAM214A	family with sequence similarity 214 member A	protein coding gene	no	ENST00000261844.11;ENST00000546305.6;ENST00000619572.4;ENST00000399202.8;ENST00000570204.1	16.317	12.927	20.639	0.968(9278)	0.991(696)	0.977(16979)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MUC17_LS045	chr7:101040336|101041573:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.;.	8.535	3.650	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AATF_LS0022	chr17:37017255|37019005:+	AATF	apoptosis antagonizing transcription factor	protein coding gene	no	.	3.130	0.155	0.000	0.02(195)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
JAKMIP2_LS009	chr5:147629746|147631413:-	JAKMIP2	janus kinase and microtubule interacting protein 2	protein coding gene	no	ENST00000616793.4;ENST00000507386.5;ENST00000265272.9;ENST00000333010.6	11.452	3.375	2.716	0.266(2545)	0.244(171)	0.669(11635)	non tumor-specific	nAS	yes
UN_AL136295.5_LS0015	chr14:24155032|24155157:+	AL136295.5	-	protein coding gene	no	.	1.716	0.418	0.000	0.038(361)	0.034(24)	0(0)	non tumor-specific	nAS	no
GNB5_LS022	chr15:52154076|52179768:-	GNB5	G protein subunit beta 5	protein coding gene	no	ENST00000261837.11;ENST00000396335.8;ENST00000358784.11;ENST00000561313.5;ENST00000560075.1;ENST00000560116.1	17.676	17.675	12.492	0.967(9268)	0.989(694)	0.965(16771)	non tumor-specific	alt_5prime	yes
UN_STAG3_UP_LS0002	chr7:100124727|100148950:+	STAG3	stromal antigen 3	protein coding gene	no	.	2.299	0.478	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
PTPN14_LS015	chr1:214401772|214402883:-	PTPN14	protein tyrosine phosphatase non-receptor type 14	protein coding gene	no	ENST00000366956.9	7.203	6.338	5.098	0.698(6689)	0.803(564)	0.826(14363)	non tumor-specific	exon_skip	yes
VILL_LS008	chr3:37990829|37993587:+	VILL	villin like	protein coding gene	no	ENST00000416303.5;ENST00000416303.5;ENST00000416303.5	1.854	3.182	1.547	0.335(3207)	0.507(356)	0.139(2412)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC020915.5_LS0004	chr19:58230462|58237249:+	AC020915.5	-	protein coding gene	no	.	1.337	0.428	0.000	0.055(523)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_CAPN12_LS0049	chr19:38743473|38743519:+	CAPN12	calpain 12	protein coding gene	no	.	8.934	1.285	0.000	0.011(107)	0.007(5)	0(0)	non tumor-specific	nAS	no
SYT16_LS013	chr14:62084385|62100394:+	SYT16	synaptotagmin 16	protein coding gene	no	ENST00000568344.5;ENST00000555409.1;ENST00000430451.3	2.196	1.007	1.611	0.092(883)	0.077(54)	0.152(2650)	non tumor-specific	alt_3prime;exon_skip	yes
SYCP2L_LS029	chr6:10956242|10958784:+	SYCP2L	synaptonemal complex protein 2 like	protein coding gene	no	ENST00000341041.8;ENST00000283141.10;ENST00000543878.5	5.589	0.937	2.243	0.142(1356)	0.057(40)	0.781(13580)	non tumor-specific	exon_skip	yes
FAM110A_LS002	chr20:833951|844708:+	FAM110A	family with sequence similarity 110 member A	protein coding gene	no	ENST00000381941.7	7.049	3.184	4.163	0.922(8831)	0.946(664)	0.924(16060)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ACSS1_LS0016	chr20:25015230|25030759:-	ACSS1	acyl-CoA synthetase short chain family member 1	protein coding gene	no	.	3.501	0.514	0.000	0.053(508)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_RNF215_LS0033	chr22:30387663|30388155:-	RNF215	ring finger protein 215	protein coding gene	no	.	2.699	0.167	0.000	0.024(232)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_TBC1D8_LS0039	chr2:101040385|101049339:-	TBC1D8	TBC1 domain family member 8	protein coding gene	no	.	0.755	0.101	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
VTI1A_LS004	chr10:112448489|112448882:+	VTI1A	vesicle transport through interaction with t-SNAREs 1A	protein coding gene	no	ENST00000483122.1	0.845	0.658	1.335	0.572(5479)	0.594(417)	0.614(10677)	non tumor-specific	exon_skip;intron_retention	yes
UN_NDRG1_LS0052	chr8:133237544|133238873:+	NDRG1	N-myc downstream regulated 1	protein coding gene	yes	.	2.413	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
MYO18A_LS039	chr17:29115099|29115351:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000527372.6;ENST00000533112.5;ENST00000531253.5;ENST00000628822.2;ENST00000530254.6	17.263	12.149	27.664	0.935(8954)	0.983(690)	0.978(17008)	non tumor-specific	exon_skip	yes
AC078883.1_LS002	chr2:172495516|172512334:-	AC078883.1	-	lncRNA gene	no	ENST00000442417.5	1.847	0.623	2.084	0.406(3892)	0.311(218)	0.822(14290)	non tumor-specific	nAS	yes
AC025569.1_LS006	chr12:70508001|70510212:+	AC025569.1	-	lncRNA gene	no	ENST00000548924.5;ENST00000549616.5;ENST00000549359.5	1.106	0.063	0.730	0.055(529)	0.004(3)	0.034(583)	non tumor-specific	nAS	yes
CLASP1_LS018	chr2:121401870|121402595:-	CLASP1	cytoplasmic linker associated protein 1	protein coding gene	no	ENST00000452274.6	0.722	0.264	0.846	0.102(979)	0.111(78)	0.262(4560)	non tumor-specific	exon_skip;intron_retention	yes
UN_CCDC114_LS0018	chr19:48319499|48320299:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	.	1.414	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FRY_LS014	chr13:32124681|32124795:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	3.739	2.588	2.511	0.369(3538)	0.624(438)	0.819(14234)	non tumor-specific	nAS	yes
UN_DPY19L2_LS0026	chr12:63616165|63617304:-	DPY19L2	dpy-19 like 2	protein coding gene	no	.	7.635	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1169P_UP_LS0001	chr15:41491807|41493058:-	RNU6-1169P	RNA, U6 small nuclear 1169, pseudogene	small non-coding RNA gene	no	.	1.084	0.101	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GM2A_LS0066	chr5:151269016|151269079:-	GM2A	GM2 ganglioside activator	protein coding gene	no	.	2.667	0.196	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
CES3_LS016	chr16:66966345|66966725:+	CES3	carboxylesterase 3	protein coding gene	no	ENST00000303334.8;ENST00000394037.5;ENST00000570236.1	4.994	14.313	1.693	0.436(4173)	0.584(410)	0.573(9965)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_OR7E85P_UP_LS0004	chr4:9480098|9480234:+	OR7E85P	olfactory receptor family 7 subfamily E member 85 pseudogene	pseudogene	no	.	1.639	0.026	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEK4_LS005	chr3:52743461|52744239:-	NEK4	NIMA related kinase 4	protein coding gene	no	ENST00000233027.9;ENST00000535191.5;ENST00000383721.8;ENST00000461689.5;ENST00000493199.1	22.969	15.307	15.500	0.986(9451)	0.993(697)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_ADGRA3_LS0028	chr4:22421617|22424191:-	ADGRA3	adhesion G protein-coupled receptor A3	protein coding gene	no	.	1.944	0.169	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
RBM22_LS004	chr5:150694240|150695506:-	RBM22	RNA binding motif protein 22	protein coding gene	no	ENST00000199814.8;ENST00000447771.6	70.065	39.766	25.152	0.991(9494)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ABTB2_LS0018	chr11:34197538|34356701:-	ABTB2	ankyrin repeat and BTB domain containing 2	protein coding gene	no	.	0.428	0.293	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
SNRNP27_LS003	chr2:69896548|69897377:+	SNRNP27	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein coding gene	no	ENST00000244227.7;ENST00000409116.5;ENST00000450162.6;ENST00000488986.1	132.188	73.095	83.290	0.998(9559)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
NT5C2_LS001	chr10:103089908|103090611:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	ENST00000404739.7;ENST00000343289.9;ENST00000369857.8	68.351	44.883	76.856	0.991(9497)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CAMK4_LS015	chr5:111449203|111473311:+	CAMK4	calcium/calmodulin dependent protein kinase IV	protein coding gene	no	ENST00000512453.5;ENST00000282356.8;ENST00000515231.5;ENST00000514007.5;ENST00000502916.5	4.131	2.146	1.611	0.374(3582)	0.396(278)	0.483(8390)	non tumor-specific	nAS	yes
UN_PFKP_LS0015	chr10:3101439|3101464:-	PFKP	phosphofructokinase, platelet	protein coding gene	no	.	3.195	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC084752.1_UP_LS0004	chr4:162741779|162746234:+	AC084752.1	-	pseudogene	no	.	18.141	0.144	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	nAS	no
HTATIP2_LS012	chr11:20382239|20382980:+	HTATIP2	HIV-1 Tat interactive protein 2	protein coding gene	yes	ENST00000421577.6;ENST00000443524.6;ENST00000419348.6;ENST00000451739.6;ENST00000531058.1;ENST00000533914.1	80.228	49.289	50.527	0.974(9336)	0.973(683)	0.979(17021)	non tumor-specific	alt_3prime	yes
TTN_LS087	chr2:178607685|178607785:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5	10.311	8.175	2.601	0.003(29)	0.016(11)	0.188(3270)	non tumor-specific	intron_retention	yes
RPH3AL_LS031	chr17:327579|386197:-	RPH3AL	rabphilin 3A like (without C2 domains)	protein coding gene	no	ENST00000573780.5	0.412	0.376	1.302	0.757(7257)	0.922(647)	0.645(11220)	non tumor-specific	exon_skip	yes
UN_HMHB1_LS0003	chr5:143813189|143820480:+	HMHB1	histocompatibility minor HB-1	protein coding gene	no	.	3.209	2.199	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC8B_LS002	chr1:89525022|89568247:+	LRRC8B	leucine rich repeat containing 8 VRAC subunit B	protein coding gene	no	ENST00000639264.1;ENST00000330947.6	0.846	0.622	0.838	0.503(4822)	0.623(437)	0.386(6714)	non tumor-specific	exon_skip	yes
SLC4A3_LS018	chr2:219630352|219631968:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	ENST00000358055.7;ENST00000373760.6;ENST00000273063.10;ENST00000425141.5;ENST00000317151.7	6.309	5.192	6.418	0.598(5729)	0.611(429)	0.882(15323)	non tumor-specific	exon_skip	yes
UN_ABR_LS0178	chr17:1152833|1155706:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	1.723	0.042	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
DZIP3_LS009	chr3:108611329|108616541:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	ENST00000361582.7;ENST00000495008.5;ENST00000486815.5;ENST00000479138.5;ENST00000463306.1	6.466	6.083	4.587	0.744(7133)	0.869(610)	0.907(15766)	non tumor-specific	alt_3prime	yes
UN_METTL8_LS0016	chr2:171360513|171433883:-	METTL8	methyltransferase like 8	protein coding gene	no	.	1.522	0.141	0.000	0.02(193)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_CABIN1_LS0098	chr22:24134415|24160330:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	1.125	0.214	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RNF126_LS0016	chr19:649748|649912:-	RNF126	ring finger protein 126	protein coding gene	no	.	4.790	2.341	0.000	0.056(541)	0.061(43)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ARHGEF19_LS005	chr1:16201861|16202416:-	ARHGEF19	Rho guanine nucleotide exchange factor 19	protein coding gene	no	ENST00000478117.5;ENST00000270747.7;ENST00000478117.5;ENST00000270747.7	43.751	20.882	13.773	0.914(8755)	0.923(648)	0.967(16810)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC139834.1_UP_LS0006	chr5:71002143|71123617:-	AC139834.1	-	lncRNA gene	no	.	25.063	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GSTP1_LS012	chr11:67584772|67585138:+	GSTP1	glutathione S-transferase pi 1	protein coding gene	yes	ENST00000398606.8;ENST00000398603.5;ENST00000642444.1;ENST00000646888.1;ENST00000398606.8;ENST00000398603.5;ENST00000642444.1;ENST00000646888.1	2581.463	1216.264	876.196	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC090001.1_LS002	chr12:95833084|95858754:-	AC090001.1	-	lncRNA gene	no	ENST00000553194.1	0.110	0.124	0.855	0.016(153)	0.057(40)	0.022(386)	non tumor-specific	nAS	yes
GHDC_LS002	chr17:42189921|42190185:-	GHDC	GH3 domain containing	protein coding gene	no	ENST00000301671.12;ENST00000414034.7;ENST00000587427.5;ENST00000428494.6	77.705	49.446	31.105	0.959(9184)	0.962(675)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CST3_LS0125	chr20:23637750|23637845:-	CST3	cystatin C	protein coding gene	no	.	95.085	3.281	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
PLAUR_LS014	chr19:43661442|43670066:-	PLAUR	plasminogen activator, urokinase receptor	protein coding gene	no	ENST00000597107.1	0.448	0.125	0.627	0.292(2802)	0.191(134)	0.003(47)	non tumor-specific	mutex_exons	yes
UN_SREBF2_LS0038	chr22:41885011|41886000:+	SREBF2	sterol regulatory element binding transcription factor 2	protein coding gene	no	.	4.037	0.562	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CLDN7_LS0017	chr17:7262296|7262359:+	CLDN7	claudin 7	protein coding gene	no	.	3.479	0.376	0.000	0.008(79)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF428_UP_LS0002	chr19:43627790|43652225:-	ZNF428	zinc finger protein 428	protein coding gene	no	.	4.512	0.250	0.000	0.023(216)	0.019(13)	0(0)	non tumor-specific	nAS	no
PIP4P2_LS001	chr8:90995820|90996654:-	PIP4P2	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein coding gene	no	ENST00000285419.7;ENST00000520709.5;ENST00000518359.5;ENST00000520014.1;ENST00000518869.1	15.593	9.565	28.075	0.947(9069)	0.989(694)	0.979(17012)	non tumor-specific	nAS	yes
UN_COG3_LS0016	chr13:45492250|45493421:+	COG3	component of oligomeric golgi complex 3	protein coding gene	no	.	7.813	5.551	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01547_LS009	chr21:44937682|44939593:-	LINC01547	long intergenic non-protein coding RNA 1547	lncRNA gene	no	ENST00000330551.3	0.941	0.382	0.680	0.115(1104)	0.093(65)	0.054(933)	non tumor-specific	alt_3prime;exon_skip	yes
IMPAD1_LS001	chr8:56964064|56966191:-	IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein coding gene	no	ENST00000262644.8;ENST00000520392.1	51.923	35.025	37.027	0.944(9047)	0.943(662)	0.979(17012)	non tumor-specific	exon_skip	yes
UN_WDR72_LS0046	chr15:53702354|53705006:-	WDR72	WD repeat domain 72	protein coding gene	no	.	2.183	1.561	0.000	0.009(88)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FRG1GP_UP_LS0017	chr22:11630645|11630969:+	FRG1GP	FSHD region gene 1 family member G, pseudogene	pseudogene	no	.	4.440	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXLNGY_LS0025	chrY:19593593|19597591:+	TXLNGY	taxilin gamma pseudogene, Y-linked	pseudogene	no	.	2.336	0.206	0.000	0.011(101)	0.004(3)	0(0)	non tumor-specific	nAS	no
EHBP1_LS014	chr2:62831158|62858406:+	EHBP1	EH domain binding protein 1	protein coding gene	no	ENST00000449820.5;ENST00000263991.9	0.190	1.298	1.995	0.133(1270)	0.125(88)	0.266(4628)	non tumor-specific	exon_skip	yes
UN_AC244669.2_LS0028	chr1:120261247|120267774:-	AC244669.2	-	pseudogene	no	.	0.433	0.117	0.000	0.003(25)	0.01(7)	0(0)	non tumor-specific	nAS	no
ACAP2_LS003	chr3:195285857|195289121:-	ACAP2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein coding gene	no	ENST00000326793.10;ENST00000618471.4;ENST00000466876.1	26.200	16.191	11.382	0.98(9392)	0.989(694)	0.973(16908)	non tumor-specific	exon_skip	yes
UN_CLDN9_UP_LS0004	chr16:3004879|3006220:+	CLDN9	claudin 9	protein coding gene	no	.	3.000	1.900	0.000	0.418(4006)	0.47(330)	0(0)	non tumor-specific	nAS	no
TP53TG3_LS001	chr16:32674564|32674777:-	TP53TG3	TP53 target 3	protein coding gene	no	ENST00000565622.5;ENST00000563102.1;ENST00000563658.5;ENST00000568854.1;ENST00000562021.1	0.140	0.020	0.623	0.327(3137)	0.316(222)	0.002(39)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_NPFFR2_UP_LS0012	chr4:71603208|71635491:+	NPFFR2	neuropeptide FF receptor 2	protein coding gene	no	.	3.118	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC008667.1_LS0005	chr5:139710933|139711540:-	AC008667.1	-	lncRNA gene	no	.	2.248	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ABTB1_LS0016	chr3:127680173|127680269:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	.	4.408	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_SS18L1_LS0011	chr20:62150851|62154281:+	SS18L1	SS18L1 subunit of BAF chromatin remodeling complex	protein coding gene	no	.	1.079	0.158	0.000	0.009(84)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
IWS1_LS031	chr2:127506719|127523676:-	IWS1	interacts with SUPT6H, CTD assembly factor 1	protein coding gene	no	ENST00000436740.1	1.005	0.004	0.582	0.001(9)	0.003(2)	0.006(108)	non tumor-specific	exon_skip	yes
CLEC4M_LS003	chr19:7763312|7765638:+	CLEC4M	C-type lectin domain family 4 member M	protein coding gene	no	ENST00000601089.1	0.062	0.019	0.939	0.02(193)	0.098(69)	0.044(762)	non tumor-specific	exon_skip	yes
FKBP5_LS004	chr6:35587117|35591130:-	FKBP5	FKBP prolyl isomerase 5	protein coding gene	no	ENST00000539068.5;ENST00000536438.5;ENST00000357266.8	61.783	54.709	107.507	0.959(9186)	0.993(697)	0.978(16997)	non tumor-specific	alt_5prime;exon_skip	yes
LNPK_LS002	chr2:175930199|175937344:-	LNPK	lunapark, ER junction formation factor	protein coding gene	no	ENST00000272748.8;ENST00000544803.5;ENST00000409660.5;ENST00000479012.1;ENST00000431754.1	21.505	11.933	14.517	0.917(8782)	0.923(648)	0.976(16965)	non tumor-specific	exon_skip	yes
PLBD1-AS1_LS001	chr12:14567806|14568019:+	PLBD1-AS1	PLBD1 antisense RNA 1	lncRNA gene	no	ENST00000545424.5	0.138	0.136	0.670	0.114(1096)	0.188(132)	0.088(1524)	non tumor-specific	nAS	yes
UN_FAM114A1_LS0020	chr4:38922893|38926851:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	.	3.952	0.330	0.000	0.01(94)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SLC7A8_LS0052	chr14:23126893|23127128:+	SLC7A8	solute carrier family 7 member 8	protein coding gene	no	.	3.005	5.282	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
AP1B1_LS021	chr22:29351266|29351705:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	ENST00000432560.6;ENST00000357586.6;ENST00000405198.5;ENST00000317368.11;ENST00000402502.5;ENST00000415447.5;ENST00000421126.5	120.947	83.176	61.393	0.99(9482)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_RDM1P1_UP_LS0005	chr17:45585819|45586086:-	RDM1P1	RDM1 pseudogene 1	pseudogene	no	.	0.736	0.062	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	nAS	no
MYT1L_LS009	chr2:1809167|1839149:-	MYT1L	myelin transcription factor 1 like	protein coding gene	no	ENST00000647755.1;ENST00000647738.1;ENST00000644820.1;ENST00000648627.1;ENST00000407844.6;ENST00000399161.7;ENST00000648339.1;ENST00000648643.1;ENST00000649840.1;ENST00000648928.1;ENST00000648465.1;ENST00000648318.1;ENST00000647618.1;ENST00000650399.1;ENST00000650485.1;ENST00000648913.1;ENST00000648478.1;ENST00000649092.1;ENST00000650560.1;ENST00000648299.1;ENST00000648933.1;ENST00000648753.1;ENST00000647687.1;ENST00000648931.1;ENST00000649207.1;ENST00000647694.1;ENST00000649663.1;ENST00000428368.7;ENST00000648316.1;ENST00000648665.1;ENST00000399157.7;ENST00000648885.1;ENST00000648943.1;ENST00000650589.1	4.011	3.880	14.744	0.065(623)	0.007(5)	0.206(3576)	non tumor-specific	nAS	yes
CASP14_LS005	chr19:15055274|15055430:+	CASP14	caspase 14	protein coding gene	no	ENST00000427043.3;ENST00000598738.1	9.264	1.447	1.056	0.164(1575)	0.138(97)	0.254(4418)	non tumor-specific	alt_3prime	yes
UN_HLA-DPB1_LS0028	chr6:33084955|33084998:-	HLA-DPB1	major histocompatibility complex, class II, DP beta 1	protein coding gene	no	.	21.541	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RNF126_LS005	chr19:648975|649679:-	RNF126	ring finger protein 126	protein coding gene	no	ENST00000605891.5;ENST00000292363.9;ENST00000590885.6;ENST00000589762.5;ENST00000605891.5;ENST00000292363.9;ENST00000590885.6;ENST00000589762.5	112.196	56.439	56.264	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ATP8A2_LS031	chr13:25769229|25774849:+	ATP8A2	ATPase phospholipid transporting 8A2	protein coding gene	no	ENST00000381655.6;ENST00000281620.10;ENST00000255283.9;ENST00000491840.1	6.064	3.117	2.417	0.129(1235)	0.067(47)	0.295(5124)	non tumor-specific	nAS	yes
MFRP_LS004	chr11:119341772|119342596:-	MFRP	membrane frizzled-related protein	protein coding gene	no	ENST00000360167.4	0.423	0.000	0.830	0.001(5)	0(0)	0(5)	non tumor-specific	nAS	yes
MTHFD1_LS001	chr14:64388468|64389001:+	MTHFD1	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein coding gene	no	ENST00000554739.5;ENST00000554768.5	0.002	0.001	0.856	0.015(144)	0.016(11)	0.111(1932)	non tumor-specific	exon_skip	yes
UN_MTND4P1_UP_LS0012	chr13:84242097|84308809:+	MTND4P1	MT-ND4 pseudogene 1	pseudogene	no	.	1.718	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.4_UP_LS0040	chr21:8259219|8259814:-	FP671120.4	-	lncRNA gene	no	.	39.851	2.445	0.000	0.024(231)	0.019(13)	0(0)	non tumor-specific	nAS	no
SPATA21_LS015	chr1:16410043|16421509:-	SPATA21	spermatogenesis associated 21	protein coding gene	no	ENST00000335496.5	2.309	0.249	0.775	0.004(42)	0.001(1)	0.039(685)	non tumor-specific	exon_skip	yes
UN_MUC3A_LS0141	chr7:100958300|100958841:+	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	4.560	2.583	0.000	0.025(235)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_TAF1C_LS0005	chr16:84179294|84179391:+	TAF1C	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein coding gene	no	.	1.794	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CAMKK1_LS013	chr17:3882370|3882528:-	CAMKK1	calcium/calmodulin dependent protein kinase kinase 1	protein coding gene	no	ENST00000158166.5	0.816	0.415	1.905	0.377(3612)	0.436(306)	0.763(13269)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_LRP4_LS0024	chr11:46869135|46871525:-	LRP4	LDL receptor related protein 4	protein coding gene	no	.	3.233	0.197	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_PLA2G4B_LS0017	chr15:41843811|41844438:+	PLA2G4B	phospholipase A2 group IVB	protein coding gene	no	.	1.294	0.136	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF462_LS0041	chr9:106974273|107003294:+	ZNF462	zinc finger protein 462	protein coding gene	no	.	0.144	0.029	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
LRRK2_LS009	chr12:40240617|40243550:+	LRRK2	leucine rich repeat kinase 2	protein coding gene	no	ENST00000343742.6;ENST00000298910.11;ENST00000644108.1	6.823	8.081	3.493	0.364(3492)	0.715(502)	0.865(15034)	non tumor-specific	exon_skip	yes
LINC-PINT_LS001	chr7:130882138|130884317:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000447307.5	0.337	0.110	0.699	0.043(412)	0.036(25)	0.057(986)	non tumor-specific	nAS	yes
UN_RBM17P3_UP_LS0006	chr9:41787250|41790130:+	RBM17P3	RNA binding motif protein 17 pseudogene 3	pseudogene	no	.	1.576	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PROM2_LS0075	chr2:95289600|95289788:-	PROM2	prominin 2	protein coding gene	no	.	2.005	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZC3H15_LS014	chr2:186502552|186504032:+	ZC3H15	zinc finger CCCH-type containing 15	protein coding gene	no	ENST00000468120.5;ENST00000496289.1	4.130	2.695	5.455	0.232(2221)	0.251(176)	0.951(16522)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC60_LS006	chr12:119472164|119479094:+	CCDC60	coiled-coil domain containing 60	protein coding gene	no	ENST00000327554.2;ENST00000546345.5	3.858	3.552	1.385	0.08(766)	0.199(140)	0.121(2100)	non tumor-specific	nAS	yes
PROC_LS018	chr2:127423408|127428357:+	PROC	protein C, inactivator of coagulation factors Va and VIIIa	protein coding gene	no	ENST00000402125.2	0.729	0.267	0.786	0.273(2619)	0.202(142)	0.06(1042)	non tumor-specific	exon_skip	yes
TMEM9B_LS005	chr11:8962183|8962695:-	TMEM9B	TMEM9 domain family member B	protein coding gene	no	ENST00000530136.1	0.675	0.072	0.684	0.012(118)	0.014(10)	0.06(1042)	non tumor-specific	exon_skip	yes
UN_ZMIZ1_LS0066	chr10:79294603|79296471:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	.	2.602	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EAF2_LS009	chr3:121854823|121857011:+	EAF2	ELL associated factor 2	protein coding gene	yes	ENST00000273668.6;ENST00000451944.2;ENST00000490477.1	18.081	10.075	4.010	0.964(9239)	0.974(684)	0.929(16156)	non tumor-specific	exon_skip	yes
UN_AC246787.2_UP_LS0041	chr14:105587686|105707888:+	AC246787.2	-	lncRNA gene	no	.	17.483	29.644	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
CSF3_LS015	chr17:40016340|40016485:+	CSF3	colony stimulating factor 3	protein coding gene	yes	ENST00000394149.7;ENST00000225474.6;ENST00000579852.1;ENST00000331769.6	2.883	3.644	2.778	0.299(2869)	0.472(331)	0.573(9952)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC004947.2_UP_LS0004	chr7:26494888|26495019:+	AC004947.2	-	lncRNA gene	no	.	3.515	0.810	0.000	0.071(676)	0.091(64)	0(0)	non tumor-specific	nAS	no
ZNF526_LS001	chr19:42220387|42224215:+	ZNF526	zinc finger protein 526	protein coding gene	no	ENST00000301215.7	7.052	3.586	4.465	0.947(9076)	0.962(675)	0.944(16407)	non tumor-specific	alt_5prime;exon_skip	yes
NOL11_LS014	chr17:67734439|67735900:+	NOL11	nucleolar protein 11	protein coding gene	no	ENST00000253247.8;ENST00000581375.5	50.551	24.660	33.162	0.986(9445)	0.996(699)	0.978(17002)	non tumor-specific	exon_skip	yes
UN_AC097634.4_LS0039	chr3:71130584|71198202:-	AC097634.4	-	protein coding gene	no	.	2.451	0.082	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
RCC1_LS040	chr1:28535380|28535610:+	RCC1	regulator of chromosome condensation 1	protein coding gene	no	ENST00000429051.1	0.052	0.048	0.645	0.094(905)	0.026(18)	0.074(1283)	non tumor-specific	exon_skip	yes
ACTR3B_LS001	chr7:152759926|152783187:+	ACTR3B	actin related protein 3B	protein coding gene	no	ENST00000377776.7;ENST00000256001.12	2.065	1.881	2.125	0.87(8334)	0.846(594)	0.849(14756)	non tumor-specific	alt_5prime;exon_skip	yes
STAU2_LS014	chr8:73603863|73613744:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000522695.5;ENST00000524300.5;ENST00000523558.5;ENST00000521210.5;ENST00000355780.9;ENST00000519961.5;ENST00000521727.5;ENST00000521451.5;ENST00000522509.5;ENST00000517542.5;ENST00000518981.5;ENST00000518767.5	34.098	26.050	18.521	0.978(9373)	0.991(696)	0.978(16998)	non tumor-specific	exon_skip	yes
MBOAT1_LS017	chr6:20151262|20152624:-	MBOAT1	membrane bound O-acyltransferase domain containing 1	protein coding gene	no	ENST00000324607.7	14.854	8.985	8.737	0.834(7987)	0.942(661)	0.904(15705)	non tumor-specific	exon_skip	yes
GBP2_LS006	chr1:89112684|89112942:-	GBP2	guanylate binding protein 2	protein coding gene	no	ENST00000493802.5	0.326	0.144	0.678	0.114(1096)	0.094(66)	0.107(1853)	non tumor-specific	nAS	yes
PTDSS2_LS012	chr11:479152|480125:+	PTDSS2	phosphatidylserine synthase 2	protein coding gene	no	ENST00000530087.1	0.353	0.158	0.894	0.518(4966)	0.494(347)	0.421(7322)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BCL2L2-PABPN1_LS0086	chr14:23321703|23321743:+	BCL2L2-PABPN1	BCL2L2-PABPN1 readthrough	protein coding gene	no	.	2.754	0.630	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL358216.1_LS001	chr10:628897|629859:+	AL358216.1	-	lncRNA gene	no	ENST00000451601.1	0.452	0.176	1.374	0.072(686)	0.046(32)	0.22(3816)	non tumor-specific	nAS	yes
TRDN_LS027	chr6:123382147|123388522:-	TRDN	triadin	protein coding gene	no	ENST00000334268.8	8.037	8.215	2.179	0.036(345)	0.101(71)	0.542(9425)	non tumor-specific	exon_skip	yes
C5_LS040	chr9:121034894|121037881:-	C5	complement C5	protein coding gene	no	ENST00000223642.2	5.794	8.111	2.184	0.344(3297)	0.661(464)	0.766(13308)	non tumor-specific	nAS	yes
UN_ELF4_LS0056	chrX:130071228|130071336:-	ELF4	E74 like ETS transcription factor 4	protein coding gene	yes	.	2.667	0.269	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PRSS23_LS010	chr11:86823593|86951216:+	PRSS23	serine protease 23	protein coding gene	no	ENST00000533902.2;ENST00000533902.2	0.025	0.022	0.701	0.124(1192)	0.152(107)	0.062(1072)	non tumor-specific	alt_3prime;exon_skip	yes
DPY19L4_LS018	chr8:94768553|94770452:+	DPY19L4	dpy-19 like 4	protein coding gene	no	ENST00000414645.6;ENST00000523020.1	14.555	10.604	8.511	0.92(8817)	0.976(685)	0.947(16468)	non tumor-specific	exon_skip	yes
UN_CSTF2_LS0029	chrX:100837992|100838239:+	CSTF2	cleavage stimulation factor subunit 2	protein coding gene	no	.	3.217	0.950	0.000	0.003(27)	0.01(7)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
CR848007.1_LS001	chr9:42901355|42903343:+	CR848007.1	-	pseudogene	no	ENST00000442354.1	0.393	0.000	0.670	0(1)	0(0)	0.009(159)	non tumor-specific	nAS	yes
UN_FBP1_UP_LS0001	chr9:94690885|94691220:-	FBP1	fructose-bisphosphatase 1	protein coding gene	yes	.	2.987	1.264	0.000	0.005(49)	0.085(60)	0(0)	non tumor-specific	nAS	no
ABCC10_LS028	chr6:43444938|43445125:+	ABCC10	ATP binding cassette subfamily C member 10	protein coding gene	no	ENST00000372530.8;ENST00000244533.7;ENST00000463024.1	16.621	7.814	14.446	0.978(9366)	0.939(659)	0.978(16993)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SFTPD_LS006	chr10:79942504|79942763:-	SFTPD	surfactant protein D	protein coding gene	no	ENST00000372292.7;ENST00000444384.3	14.543	166.320	2.414	0.524(5022)	0.738(518)	0.72(12511)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
VPS9D1_LS012	chr16:89712093|89712460:-	VPS9D1	VPS9 domain containing 1	protein coding gene	no	ENST00000568691.5	0.058	0.040	0.811	0.176(1689)	0.178(125)	0.223(3878)	non tumor-specific	alt_3prime;intron_retention	yes
CASZ1_LS011	chr1:10650755|10650941:-	CASZ1	castor zinc finger 1	protein coding gene	no	ENST00000377022.7;ENST00000344008.5;ENST00000490176.1	7.728	9.551	13.493	0.927(8880)	0.925(649)	0.875(15204)	non tumor-specific	exon_skip	yes
SSC5D_LS007	chr19:55491080|55493595:+	SSC5D	scavenger receptor cysteine rich family member with 5 domains	protein coding gene	no	ENST00000587166.5;ENST00000389623.10	4.616	3.298	2.738	0.46(4403)	0.605(425)	0.712(12383)	non tumor-specific	intron_retention	yes
UN_DHX38_LS0006	chr16:72096325|72097792:-	DHX38	DEAH-box helicase 38	protein coding gene	no	.	4.246	0.071	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTGES3L-AARSD1_LS025	chr17:42980275|42980366:-	PTGES3L-AARSD1	PTGES3L-AARSD1 readthrough	protein coding gene	no	ENST00000409399.5	0.046	0.044	0.822	0.071(681)	0.067(47)	0.303(5271)	non tumor-specific	intron_retention	yes
UN_NPTXR_LS0018	chr22:38822833|38822979:-	NPTXR	neuronal pentraxin receptor	protein coding gene	no	.	5.819	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL024498.2_LS0069	chr6:10801961|10803720:-	AL024498.2	-	protein coding gene	no	.	2.054	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
TULP1_LS013	chr6:35511010|35511648:-	TULP1	TUB like protein 1	protein coding gene	no	ENST00000229771.10;ENST00000614066.4;ENST00000448446.2	0.984	0.023	0.728	0.023(219)	0.02(14)	0.144(2511)	non tumor-specific	exon_skip	yes
TOR1AIP1_LS015	chr1:179901388|179903966:+	TOR1AIP1	torsin 1A interacting protein 1	protein coding gene	no	ENST00000528443.6;ENST00000271583.7;ENST00000606911.6;ENST00000435319.8;ENST00000531630.6;ENST00000527391.5;ENST00000529091.5;ENST00000474875.5;ENST00000531726.5;ENST00000524653.1	54.511	50.488	32.172	0.976(9348)	0.989(694)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_FBRSL1_LS0064	chr12:132527988|132543175:+	FBRSL1	fibrosin like 1	protein coding gene	no	.	4.838	0.844	0.000	0.066(632)	0.033(23)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GDA_LS002	chr9:72149682|72195500:+	GDA	solute carrier family 25 member 16	protein coding gene	no	ENST00000238018.8;ENST00000358399.7;ENST00000475764.5	5.240	9.180	2.131	0.361(3454)	0.405(284)	0.254(4414)	non tumor-specific	alt_3prime	yes
UN_BX323014.1_UP_LS0009	chr1:232292746|232293011:-	BX323014.1	-	pseudogene	no	.	1.870	0.365	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC013468.1_UP_LS0001	chr2:189767388|189771708:-	AC013468.1	-	lncRNA gene	no	.	3.348	0.500	0.000	0.008(80)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
C2CD3_LS031	chr11:74103625|74106371:-	C2CD3	C2 domain containing 3 centriole elongation regulator	protein coding gene	no	ENST00000334126.11;ENST00000313663.11;ENST00000537285.1	6.308	3.675	3.740	0.729(6984)	0.836(587)	0.923(16052)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KCTD1_LS0002	chr18:26455901|26457621:-	KCTD1	potassium channel tetramerization domain containing 1	protein coding gene	no	.	1.439	0.142	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AP001462.1_UP_LS0002	chr11:64778104|64778947:+	AP001462.1	-	lncRNA gene	no	.	1.399	0.348	0.000	0.012(112)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FOXN3_LS0036	chr14:89326594|89350672:-	FOXN3	forkhead box N3	protein coding gene	no	.	3.728	0.765	0.000	0.018(170)	0.006(4)	0(0)	non tumor-specific	nAS	no
MELTF_LS006	chr3:197008965|197009618:-	MELTF	melanotransferrin	protein coding gene	no	ENST00000296350.9	26.354	9.362	4.251	0.793(7593)	0.759(533)	0.865(15037)	non tumor-specific	alt_3prime	yes
UN_CCDC40_LS0015	chr17:80058146|80058494:+	CCDC40	coiled-coil domain containing 40	protein coding gene	no	.	2.669	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip	no
RSU1P1_LS001	chr10:42725977|42734708:+	RSU1P1	Ras suppressor protein 1 pseudogene 1	pseudogene	no	ENST00000453416.1	0.182	0.059	0.602	0.005(50)	0.003(2)	0.015(268)	non tumor-specific	nAS	yes
PCNX2_LS039	chr1:233218184|233236845:-	PCNX2	pecanex 2	protein coding gene	no	ENST00000475463.6;ENST00000430153.5	0.358	0.153	0.822	0.23(2206)	0.226(159)	0.321(5574)	non tumor-specific	exon_skip	yes
NAT10_LS018	chr11:34122592|34123762:+	NAT10	N-acetyltransferase 10	protein coding gene	no	ENST00000257829.7;ENST00000531159.6;ENST00000615292.1	36.087	15.918	15.596	0.972(9314)	0.99(695)	0.975(16941)	non tumor-specific	nAS	yes
UN_TNS1_LS0248	chr2:217901823|217905296:-	TNS1	tensin 1	protein coding gene	no	.	7.402	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_TUBB_LS0260	chr6:30724393|30724415:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	43.744	0.539	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERMN_LS002	chr2:157321791|157324147:-	ERMN	ermin	protein coding gene	no	ENST00000409216.5	0.150	0.047	1.213	0.018(173)	0.004(3)	0.037(650)	non tumor-specific	exon_skip	yes
LTBP4_LS002	chr19:40594553|40599197:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	ENST00000599016.5	0.098	0.073	2.459	0.049(465)	0.017(12)	0.103(1787)	non tumor-specific	nAS	yes
SCNN1A_LS009	chr12:6353887|6354438:-	SCNN1A	sodium channel epithelial 1 subunit alpha	protein coding gene	no	ENST00000366131.6	0.044	0.016	0.711	0.335(3207)	0.541(380)	0.09(1560)	non tumor-specific	nAS	yes
ADAMTS14_LS016	chr10:70743681|70745226:+	ADAMTS14	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein coding gene	no	.;.;.	1.003	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TTC7A_LS0016	chr2:46957007|46957744:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	.	3.136	0.258	0.000	0.01(94)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PRICKLE2_UP_LS0013	chr3:64470697|64494239:-	PRICKLE2	prickle planar cell polarity protein 2	protein coding gene	no	.	3.620	1.821	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
WDFY4_LS054	chr10:48957282|48959722:+	WDFY4	WDFY family member 4	protein coding gene	no	ENST00000325239.11;ENST00000465910.5	10.021	3.947	2.170	0.678(6500)	0.679(477)	0.747(12990)	non tumor-specific	nAS	yes
ST14_LS012	chr11:130196448|130196570:+	ST14	ST14 transmembrane serine protease matriptase	protein coding gene	no	ENST00000278742.5;ENST00000524718.5;ENST00000530376.1	174.929	132.123	7.503	0.947(9071)	0.979(687)	0.792(13765)	non tumor-specific	nAS	yes
GALC_LS004	chr14:87934878|87939905:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000261304.6;ENST00000393569.6;ENST00000393568.8;ENST00000555179.1	21.003	17.631	17.772	0.956(9162)	0.984(691)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
ITGB5_LS012	chr3:124796817|124817621:-	ITGB5	integrin subunit beta 5	protein coding gene	no	ENST00000481591.5	3.559	2.106	3.236	0.828(7930)	0.853(599)	0.819(14243)	non tumor-specific	exon_skip	yes
NEK6_LS015	chr9:124292088|124301936:+	NEK6	NIMA related kinase 6	protein coding gene	no	ENST00000546191.5;ENST00000422297.5	0.082	0.187	0.803	0.618(5922)	0.61(428)	0.155(2686)	non tumor-specific	exon_skip;mutex_exons	yes
WBP2_LS001	chr17:75846034|75846336:-	WBP2	WW domain binding protein 2	protein coding gene	no	ENST00000591831.5	0.298	0.196	7.557	0.808(7746)	0.873(613)	0.97(16866)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MIR6859-1_UP_LS0009	chr1:18267|188756:-	MIR6859-1	microRNA 6859-1	small non-coding RNA gene	no	.	3.502	0.286	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL121944.1_LS0003	chr6:28078972|28080320:-	AL121944.1	-	lncRNA gene	no	.	1.746	1.137	0.000	0.018(170)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_AHDC1_LS0044	chr1:27548292|27548396:+	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	0.819	0.985	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CAD_LS0062	chr2:27242775|27242875:+	CAD	DNA fragmentation factor subunit beta	protein coding gene	no	.	10.323	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SEC16A_LS026	chr9:136451408|136453428:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000431893.3	52.915	32.888	31.715	0.989(9477)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
ADAM9_LS021	chr8:39077411|39090047:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000468065.5	0.264	0.251	0.742	0.151(1442)	0.117(82)	0.211(3675)	non tumor-specific	exon_skip	yes
SCUBE2_LS034	chr11:9053212|9053637:-	SCUBE2	signal peptide, CUB domain and EGF like domain containing 2	protein coding gene	yes	ENST00000519788.6	0.615	0.441	0.776	0.221(2118)	0.372(261)	0.163(2831)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SLC2A13_LS0010	chr12:39830228|39854904:-	SLC2A13	solute carrier family 2 member 13	protein coding gene	no	.	1.241	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC2A9_LS0088	chr4:9988144|9993255:+	SLC2A9	solute carrier family 2 member 9	protein coding gene	no	.	2.194	0.391	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC007785.1_LS0016	chr19:46180689|46180801:-	AC007785.1	-	lncRNA gene	no	.	5.950	0.503	0.000	0.048(461)	0.01(7)	0(0)	non tumor-specific	nAS	no
GSDME_LS015	chr7:24744754|24757707:-	GSDME	gasdermin E	protein coding gene	no	ENST00000419307.6	0.174	0.103	0.740	0.292(2798)	0.279(196)	0.151(2620)	non tumor-specific	exon_skip	yes
UN_AC023421.2_UP_LS0023	chr18:45800890|45838975:-	AC023421.2	-	lncRNA gene	no	.	2.683	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
PLEKHG4B_LS025	chr5:182463|186410:+	PLEKHG4B	pleckstrin homology and RhoGEF domain containing G4B	protein coding gene	no	.;.	5.949	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ABR_LS0188	chr17:1153485|1153603:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	2.366	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF106_LS021	chr15:42444262|42444827:-	ZNF106	zinc finger protein 106	protein coding gene	no	ENST00000263805.8;ENST00000565380.5;ENST00000565500.5;ENST00000565611.5;ENST00000564754.6;ENST00000567772.2	15.134	12.642	12.749	0.901(8629)	0.949(666)	0.973(16913)	non tumor-specific	exon_skip	yes
UN_LRRC36_LS0023	chr16:67365221|67365304:+	LRRC36	leucine rich repeat containing 36	protein coding gene	no	.	0.961	1.345	0.000	0.002(17)	0.07(49)	0(0)	non tumor-specific	intron_retention	no
RILPL1_LS004	chr12:123472682|123484180:-	RILPL1	Rab interacting lysosomal protein like 1	protein coding gene	no	ENST00000376874.8;ENST00000340724.6;ENST00000544468.1;ENST00000376874.8;ENST00000340724.6;ENST00000544468.1	13.963	10.140	32.778	0.921(8826)	0.962(675)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FMO4_LS0015	chr1:171332908|171334599:+	FMO4	flavin containing dimethylaniline monoxygenase 4	protein coding gene	no	.	3.155	0.276	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC02109_LS002	chr5:29145874|29146271:+	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	ENST00000602801.1	5.208	0.000	0.688	0(1)	0(0)	0.005(91)	non tumor-specific	nAS	yes
CDK5RAP2_LS054	chr9:120545790|120550792:-	CDK5RAP2	CDK5 regulatory subunit associated protein 2	protein coding gene	no	ENST00000360822.7;ENST00000349780.8;ENST00000360190.8;ENST00000473282.6;ENST00000480112.5;ENST00000481266.1	15.519	10.221	12.431	0.898(8602)	0.973(683)	0.973(16904)	non tumor-specific	exon_skip	yes
UN_HDGF_LS0033	chr1:156742361|156742484:+	HDGF	heparin binding growth factor	protein coding gene	no	.	5.213	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
HEPHL1_LS018	chr11:94111065|94111537:+	HEPHL1	hephaestin like 1	protein coding gene	no	ENST00000315765.9	8.979	3.073	1.294	0.115(1098)	0.068(48)	0.113(1960)	non tumor-specific	nAS	yes
AL357673.1_LS007	chr1:54144813|54172603:-	AL357673.1	-	protein coding gene	no	ENST00000525949.1	0.081	0.036	0.726	0.001(12)	0.001(1)	0.022(385)	non tumor-specific	nAS	yes
FOCAD_LS017	chr9:20778768|20781727:+	FOCAD	focadhesin	protein coding gene	no	ENST00000380249.5;ENST00000338382.10	7.945	7.138	6.451	0.8(7664)	0.9(632)	0.947(16454)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC138696.1_LS0002	chr8:143247193|143249690:+	AC138696.1	-	protein coding gene	no	.	0.500	0.833	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MAPKAPK5_LS0009	chr12:111850171|111865250:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	.	0.825	0.391	0.000	0.018(176)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
TRMT9B_LS004	chr8:12951381|12952063:+	TRMT9B	tRNA methyltransferase 9B (putative)	protein coding gene	no	ENST00000528335.5;ENST00000400069.7	0.279	0.157	0.795	0.071(678)	0.172(121)	0.113(1957)	non tumor-specific	exon_skip	yes
BCAS2_LS007	chr1:114581391|114581499:-	BCAS2	BCAS2 pre-mRNA processing factor	protein coding gene	no	ENST00000369541.3;ENST00000485021.1	64.268	43.546	43.035	0.961(9212)	0.969(680)	0.979(17019)	non tumor-specific	alt_5prime	yes
NBPF12_LS008	chr1:146951489|146959859:+	NBPF12	NBPF member 12	protein coding gene	yes	ENST00000617844.4;ENST00000611443.4	2.867	1.779	0.730	0.763(7306)	0.863(606)	0.237(4115)	non tumor-specific	exon_skip	yes
UN_TPO_LS0053	chr2:1542588|1542875:+	TPO	thyroid peroxidase	protein coding gene	no	.	167.292	294.309	0.000	0.005(52)	0.019(13)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MPPE1_LS0013	chr18:11902358|11905347:-	MPPE1	metallophosphoesterase 1	protein coding gene	no	.	0.777	0.179	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DCAF11_LS025	chr14:24115726|24116917:+	DCAF11	DDB1 and CUL4 associated factor 11	protein coding gene	no	ENST00000561056.5;ENST00000557809.5;ENST00000557802.5;ENST00000559796.5;ENST00000560457.5;ENST00000326009.9;ENST00000557888.5;ENST00000561056.5;ENST00000557809.5;ENST00000557802.5;ENST00000559796.5;ENST00000560457.5;ENST00000326009.9;ENST00000557888.5	0.570	0.966	4.585	0.956(9160)	0.989(694)	0.954(16575)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TYW5_LS0021	chr2:199954769|199955179:+	TYW5	tRNA-yW synthesizing protein 5	protein coding gene	no	.	1.183	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SND1_LS004	chr7:127686762|127694828:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	ENST00000354725.7;ENST00000461056.5;ENST00000468621.5	95.875	55.767	58.104	0.991(9496)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_TRRAP_LS0010	chr7:98906255|98910056:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	.	1.016	0.223	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TRPV1_LS019	chr17:3591353|3592067:-	TRPV1	transient receptor potential cation channel subfamily V member 1	protein coding gene	no	ENST00000399759.7;ENST00000571088.5;ENST00000572705.1;ENST00000650505.1;ENST00000399756.8;ENST00000425167.6;ENST00000574085.5;ENST00000576351.5;ENST00000310522.5	3.980	2.486	6.878	0.805(7715)	0.852(598)	0.955(16600)	non tumor-specific	nAS	yes
IGF2BP1_LS006	chr17:49026517|49031910:+	IGF2BP1	insulin like growth factor 2 mRNA binding protein 1	protein coding gene	yes	ENST00000290341.7;ENST00000431824.2;ENST00000515586.5;ENST00000499130.6;ENST00000505562.1	6.081	1.117	1.942	0.248(2380)	0.155(109)	0.062(1081)	non tumor-specific	exon_skip	yes
PGAP2_LS027	chr11:3811424|3824270:+	PGAP2	post-GPI attachment to proteins 2	protein coding gene	no	ENST00000477358.6;ENST00000485602.5;ENST00000475884.5	0.062	0.068	0.900	0.586(5615)	0.593(416)	0.403(6998)	non tumor-specific	exon_skip	yes
PTPN4_LS038	chr2:119967972|119976957:+	PTPN4	protein tyrosine phosphatase non-receptor type 4	protein coding gene	no	ENST00000441089.1	0.530	0.195	0.659	0.025(243)	0.033(23)	0.016(285)	non tumor-specific	alt_3prime	yes
XPO5_LS002	chr6:43524635|43524831:-	XPO5	exportin 5	protein coding gene	yes	ENST00000265351.11;ENST00000455854.2;ENST00000488195.6;ENST00000486936.2;ENST00000455285.2	45.674	13.976	29.609	0.997(9553)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC073365.1_LS0020	chr3:191559754|191566751:+	AC073365.1	-	lncRNA gene	no	.	1.491	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
ATP13A2_LS026	chr1:16996496|16997020:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000463860.5	23.422	15.716	20.324	0.984(9424)	0.972(682)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FCRL5_LS0009	chr1:157534347|157534614:-	FCRL5	Fc receptor like 5	protein coding gene	no	.	0.535	0.180	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AGRN_LS0180	chr1:1051560|1051596:-	AGRN	agrin	protein coding gene	yes	.	10.297	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SMN2_LS0005	chr5:70070751|70076529:+	SMN2	survival of motor neuron 2, centromeric	protein coding gene	no	.	25.239	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC079594.2_LS0007	chr3:160258635|160268415:-	AC079594.2	-	protein coding gene	no	.	7.093	0.197	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
GTPBP8_LS004	chr3:112991412|112993027:+	GTPBP8	GTP binding protein 8 (putative)	protein coding gene	no	ENST00000619116.4	0.078	0.000	0.539	0.001(14)	0(0)	0.005(83)	non tumor-specific	nAS	yes
ATAD2_LS019	chr8:123349444|123356389:-	ATAD2	ATPase family AAA domain containing 2	protein coding gene	no	ENST00000517666.5;ENST00000287394.9;ENST00000519124.5;ENST00000521496.5	21.641	4.534	5.053	0.911(8729)	0.923(648)	0.937(16288)	non tumor-specific	alt_3prime	yes
SGIP1_LS003	chr1:66534368|66590470:+	SGIP1	SH3GL interacting endocytic adaptor 1	protein coding gene	no	ENST00000493564.1	0.635	0.002	0.790	0.042(401)	0.091(64)	0.196(3410)	non tumor-specific	exon_skip;mutex_exons	yes
UN_POLR2E_LS0054	chr19:1088720|1089514:-	POLR2E	RNA polymerase II, I and III subunit E	protein coding gene	no	.	32.060	2.778	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
TIAM2_LS020	chr6:155148334|155164415:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000461783.7;ENST00000528535.5;ENST00000360366.8;ENST00000529824.6	2.520	1.645	1.379	0.223(2135)	0.252(177)	0.566(9844)	non tumor-specific	nAS	yes
UN_FIRRE_LS0019	chrX:131695913|131709498:-	FIRRE	firre intergenic repeating RNA element	lncRNA gene	no	.	3.539	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDKN1A_LS0078	chr6:36686642|36687079:-	CDKN1A	cyclin dependent kinase inhibitor 1A	protein coding gene	yes	.	3.226	0.701	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF5_LS0009	chr7:22145218|22146897:-	RAPGEF5	Rap guanine nucleotide exchange factor 5	protein coding gene	no	.	2.214	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
RAB17_LS008	chr2:237576690|237577257:-	RAB17	RAB17, member RAS oncogene family	protein coding gene	no	ENST00000430445.1	0.244	0.076	0.849	0.453(4344)	0.635(446)	0.169(2944)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AC018467.1_LS003	chr2:23020392|23025821:-	AC018467.1	-	lncRNA gene	no	ENST00000421581.1	1.091	0.685	0.965	0.022(207)	0.078(55)	0.025(429)	non tumor-specific	nAS	yes
SYCP2_LS059	chr20:59919182|59919493:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000357552.7;ENST00000371001.6;ENST00000446834.5	2.727	0.340	1.079	0.175(1678)	0.135(95)	0.517(8992)	non tumor-specific	intron_retention	yes
COL18A1_LS021	chr21:45482025|45482795:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	136.904	124.569	99.988	0.984(9423)	0.997(700)	0.978(16997)	non tumor-specific	nAS	yes
HERC1_LS015	chr15:63632811|63633848:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6;ENST00000561436.1;ENST00000561359.1	21.718	18.903	40.057	0.973(9318)	0.987(693)	0.979(17018)	non tumor-specific	exon_skip	yes
SLC5A6_LS036	chr2:27211533|27212832:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	ENST00000432106.5	0.034	0.060	0.675	0.708(6785)	0.701(492)	0.047(821)	non tumor-specific	exon_skip	yes
UN_COL11A1_LS0015	chr1:102962760|102964742:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	.	1.322	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM56-RWDD3_LS0023	chr1:95165198|95174066:-	TMEM56-RWDD3	TLCD4-RWDD3 readthrough	protein coding gene	no	.	3.115	2.013	0.000	0.008(76)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_CNGB3_LS0015	chr8:86579252|86579459:-	CNGB3	cyclic nucleotide gated channel subunit beta 3	protein coding gene	no	.	1.039	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0025	chr6:112532175|112593102:+	AL360085.1	-	pseudogene	no	.	2.211	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
SFSWAP_LS005	chr12:131714193|131714822:+	SFSWAP	splicing factor SWAP	protein coding gene	no	ENST00000540469.5;ENST00000538548.5	4.055	2.751	11.772	0.921(8820)	0.926(650)	0.975(16945)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AL122018.1_UP_LS0006	chr1:236097282|236097312:+	AL122018.1	-	pseudogene	no	.	4.438	0.670	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DNAJC7_LS0026	chr17:42003557|42017040:-	DNAJC7	DnaJ heat shock protein family (Hsp40) member C7	protein coding gene	no	.	0.926	1.068	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL162376.1_UP_LS0012	chr13:73254253|73378772:+	AL162376.1	-	lncRNA gene	no	.	2.163	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDE4D_LS0003	chr5:58975877|58976350:-	PDE4D	phosphodiesterase 4D	protein coding gene	no	.	2.449	0.342	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_COL8A1_LS0087	chr3:99795588|99795616:+	COL8A1	collagen type VIII alpha 1 chain	protein coding gene	no	.	14.483	0.135	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_UBB_LS0170	chr17:16382117|16382295:-	UBB	ubiquitin B	protein coding gene	no	.	55.091	28.835	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
SPTA1_LS052	chr1:158685347|158686494:-	SPTA1	spectrin alpha, erythrocytic 1	protein coding gene	no	ENST00000368147.8;ENST00000643759.1	4.030	0.008	0.872	0.011(102)	0.001(1)	0.047(809)	non tumor-specific	nAS	yes
UN_LYST_LS0010	chr1:235709204|235712057:-	LYST	lysosomal trafficking regulator	protein coding gene	no	.	3.648	0.546	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PRPF19_LS009	chr11:60899304|60900582:-	PRPF19	pre-mRNA processing factor 19	protein coding gene	no	ENST00000227524.8	197.162	98.905	125.014	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
PAGE2B_LS007	chrX:55077524|55078782:+	PAGE2B	PAGE family member 2B	protein coding gene	no	ENST00000374974.7;ENST00000374971.1	11.833	0.923	0.804	0.09(865)	0.01(7)	0.184(3202)	non tumor-specific	nAS	yes
ERCC4_LS005	chr16:13927655|13927973:+	ERCC4	ERCC excision repair 4, endonuclease catalytic subunit	protein coding gene	no	ENST00000574781.1	0.277	0.156	0.745	0.145(1392)	0.118(83)	0.114(1989)	non tumor-specific	intron_retention	yes
GRK2_LS024	chr11:67283228|67283707:+	GRK2	G protein-coupled receptor kinase 2	protein coding gene	no	ENST00000308595.9;ENST00000416281.6;ENST00000526572.5;ENST00000527176.5;ENST00000531390.1;ENST00000532611.1	98.428	53.019	106.497	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CHN2_LS003	chr7:29146960|29148502:+	CHN2	chimerin 2	protein coding gene	no	ENST00000461824.1	0.150	0.144	0.856	0.27(2588)	0.346(243)	0.225(3919)	non tumor-specific	nAS	yes
UN_CCDC92_LS0036	chr12:123937369|123937427:+	CCDC92	coiled-coil domain containing 92	protein coding gene	no	.	1.024	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC35E2A_LS0035	chr1:1734834|1737649:-	SLC35E2A	solute carrier family 35 member E2A	protein coding gene	no	.	2.389	0.951	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CLDND1_LS0015	chr3:98516742|98517052:-	CLDND1	claudin domain containing 1	protein coding gene	no	.	6.834	1.429	0.000	0.007(63)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MED6P1_UP_LS0008	chr10:88183204|88274933:-	MED6P1	mediator complex subunit 6 pseudogene 1	pseudogene	no	.	3.890	0.818	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	nAS	no
SFTPB_LS030	chr2:85668251|85668674:-	SFTPB	surfactant protein B	protein coding gene	no	ENST00000393822.7;ENST00000409383.5	0.959	0.284	1.231	0.107(1022)	0.212(149)	0.03(528)	non tumor-specific	nAS	yes
UN_HNRNPA3P1_LS0001	chr10:43789574|43789601:-	HNRNPA3P1	heterogeneous nuclear ribonucleoprotein A3 pseudogene 1	pseudogene	no	.	2.956	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADGRF5_LS0014	chr6:46869092|46869247:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	.	5.874	9.768	0.000	0.485(4648)	0.664(466)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_XIST_LS0107	chrX:73845713|73846006:+	XIST	X inactive specific transcript	lncRNA gene	yes	.	8.986	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR7E117P_UP_LS0002	chr11:3604658|3605763:-	OR7E117P	olfactory receptor family 7 subfamily E member 117 pseudogene	pseudogene	no	.	2.046	0.301	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC092329.3_LS0026	chr19:23260112|23260864:-	AC092329.3	-	protein coding gene	no	.	1.169	0.420	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
CHST9_LS006	chr18:27142905|27185136:-	CHST9	carbohydrate sulfotransferase 9	protein coding gene	no	ENST00000618847.4;ENST00000580774.2	4.097	2.948	1.533	0.368(3522)	0.651(457)	0.38(6600)	non tumor-specific	exon_skip	yes
UN_TAF15_LS0193	chr17:35844650|35844678:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	72.536	15.236	0.000	0.018(168)	0.014(10)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_C11orf58_LS0007	chr11:16738841|16743584:+	C11orf58	chromosome 11 open reading frame 58	protein coding gene	no	.	1.812	0.158	0.000	0.015(140)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
GRK6_LS003	chr5:177426619|177430872:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000511244.5	0.189	0.094	0.699	0.398(3814)	0.37(260)	0.196(3399)	non tumor-specific	nAS	yes
MUC4_LS336	chr3:195785017|195788522:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	1.017	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PCAT1_LS006	chr8:126589290|126666545:+	PCAT1	prostate cancer associated transcript 1	lncRNA gene	yes	ENST00000520512.1	1.598	0.000	0.633	0(1)	0(0)	0.008(139)	non tumor-specific	nAS	yes
UN_MIDN_UP_LS0001	chr19:1245714|1246401:+	MIDN	midnolin	protein coding gene	no	.	1.593	0.232	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
COG2_LS025	chr1:230679052|230683574:+	COG2	component of oligomeric golgi complex 2	protein coding gene	no	ENST00000366669.8;ENST00000468893.6;ENST00000366668.7;ENST00000534989.1;ENST00000366669.8;ENST00000468893.6;ENST00000366668.7;ENST00000534989.1	27.928	17.516	18.074	0.987(9453)	0.991(696)	0.977(16989)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM10_LS005	chr15:58610517|58610999:-	ADAM10	ADAM metallopeptidase domain 10	protein coding gene	no	ENST00000260408.7;ENST00000396136.6;ENST00000470269.5	38.450	24.743	26.722	0.99(9485)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip;intron_retention	yes
MUC19_LS133	chr12:40537715|40537854:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9;ENST00000424466.6	2.256	0.156	0.811	0.005(44)	0.003(2)	0.048(833)	non tumor-specific	alt_3prime	yes
PCYT1B_LS002	chrX:24562505|24575130:-	PCYT1B	phosphate cytidylyltransferase 1, choline, beta	protein coding gene	no	ENST00000379145.5;ENST00000356768.8;ENST00000379144.6;ENST00000496020.1	5.187	2.201	2.568	0.265(2535)	0.283(199)	0.552(9591)	non tumor-specific	alt_3prime	yes
UN_PITPNM3_LS0011	chr17:6463639|6463732:-	PITPNM3	PITPNM family member 3	protein coding gene	no	.	1.810	1.192	0.000	0.007(68)	0.011(8)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_TNFRSF4_UP_LS0002	chr1:1214184|1216723:-	TNFRSF4	TNF receptor superfamily member 4	protein coding gene	no	.	0.763	0.378	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
INF2_LS010	chr14:104708732|104709281:+	INF2	inverted formin 2	protein coding gene	no	ENST00000330634.11;ENST00000392634.8;ENST00000252527.8;ENST00000617571.4;ENST00000474229.1	73.894	49.410	84.443	0.994(9519)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NT5E_LS0011	chr6:85494979|85495012:-	NT5E	5'-nucleotidase ecto	protein coding gene	no	.	5.871	0.615	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AGPS_LS0015	chr2:177441040|177442407:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	.	11.328	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
NME2_LS009	chr17:51170049|51171487:+	NME2	NME/NM23 nucleoside diphosphate kinase 2	protein coding gene	no	ENST00000514264.6;ENST00000513177.5;ENST00000512737.5;ENST00000503064.5;ENST00000393190.4;ENST00000570801.1;ENST00000573262.1	1450.034	553.069	960.895	0.994(9524)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_OSMR_LS0014	chr5:38886190|38903904:+	OSMR	oncostatin M receptor	protein coding gene	no	.	2.903	0.938	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FAM86HP_UP_LS0003	chr3:130143767|130144326:-	FAM86HP	family with sequence similarity 86 member H, pseudogene	pseudogene	no	.	2.278	0.210	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
SGCB_LS005	chr4:52029863|52031865:-	SGCB	sarcoglycan beta	protein coding gene	no	ENST00000506357.5	0.103	0.082	0.794	0.312(2991)	0.303(213)	0.336(5834)	non tumor-specific	alt_5prime;exon_skip	yes
HAVCR1_LS026	chr5:157058076|157058921:-	HAVCR1	hepatitis A virus cellular receptor 1	protein coding gene	no	ENST00000522693.5;ENST00000522693.5	1.289	0.561	0.832	0.049(474)	0.064(45)	0.002(41)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LSM4_LS004	chr19:18309861|18310110:-	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	ENST00000600289.6	0.586	4.100	2.812	0.844(8085)	0.809(568)	0.906(15740)	non tumor-specific	alt_5prime;exon_skip	yes
THADA_LS046	chr2:43571862|43572814:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405975.6;ENST00000405006.8;ENST00000398653.5;ENST00000408045.7;ENST00000402796.5;ENST00000402360.6;ENST00000404790.5;ENST00000474159.6;ENST00000403856.1	12.490	7.278	9.186	0.905(8674)	0.959(673)	0.964(16762)	non tumor-specific	exon_skip	yes
UN_TDRP_LS0004	chr8:494597|499781:-	TDRP	testis development related protein	protein coding gene	no	.	1.772	0.069	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATP5IF1_LS0009	chr1:28236430|28236648:-	ATP5IF1	ATP synthase inhibitory factor subunit 1	protein coding gene	no	.	9.184	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLDN4_LS0175	chr7:73831808|73832313:-	CLDN4	claudin 4	protein coding gene	no	.	0.697	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUBAL3_UP_LS0001	chr10:5431548|5460500:-	TUBAL3	tubulin alpha like 3	protein coding gene	no	.	3.443	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RPS27L_LS004	chr15:63156521|63156787:-	RPS27L	ribosomal protein S27 like	protein coding gene	no	ENST00000455271.5;ENST00000635699.1	0.121	0.229	1.967	0.776(7432)	0.825(579)	0.768(13353)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RPS24_UP_LS0001	chr10:77880998|77976156:+	RPS24	ribosomal protein S24	protein coding gene	no	.	1.556	0.150	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C8orf37_LS0015	chr8:95268049|95269035:-	C8orf37	chromosome 8 open reading frame 37	protein coding gene	no	.	0.785	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
C16orf97_LS002	chr16:52005634|52058368:-	C16orf97	chromosome 16 open reading frame 97	lncRNA gene	no	ENST00000568524.5	3.758	0.000	0.727	0.003(24)	0(0)	0.002(41)	non tumor-specific	nAS	yes
UN_ANKRD36_LS0012	chr2:97143086|97144518:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	.	25.681	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
DGKD_LS041	chr2:233467203|233469371:+	DGKD	diacylglycerol kinase delta	protein coding gene	no	.;.;.	3.512	7.597	0.000	0.206(1976)	0.275(193)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02565_UP_LS0003	chr18:57173618|57174997:-	LINC02565	long intergenic non-protein coding RNA 2565	lncRNA gene	no	.	0.932	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
PPFIA3_LS001	chr19:49119722|49127859:+	PPFIA3	PTPRF interacting protein alpha 3	protein coding gene	no	ENST00000334186.8;ENST00000602655.5	0.540	0.331	2.911	0.109(1040)	0.041(29)	0.407(7074)	non tumor-specific	nAS	yes
UN_AC069368.1_LS0061	chr15:64895004|64921921:+	AC069368.1	-	protein coding gene	no	.	1.464	0.244	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
CFAP43_LS040	chr10:104207824|104212007:-	CFAP43	cilia and flagella associated protein 43	protein coding gene	no	ENST00000357060.7;ENST00000278064.6;ENST00000369720.5;ENST00000369719.1	2.196	1.805	1.269	0.3(2870)	0.477(335)	0.446(7745)	non tumor-specific	exon_skip	yes
UN_NUDT22_LS0036	chr11:64227493|64227588:+	NUDT22	nudix hydrolase 22	protein coding gene	no	.	2.215	0.606	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_IFNA5_UP_LS0021	chr9:21329415|21330794:-	IFNA5	interferon alpha 5	protein coding gene	no	.	3.577	1.633	0.000	0.289(2772)	0.342(240)	0(0)	non tumor-specific	nAS	no
UN_AC118553.2_LS0005	chr1:100007600|100009288:+	AC118553.2	-	protein coding gene	no	.	1.874	0.333	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_YJEFN3_LS0003	chr19:19529517|19531435:+	YJEFN3	YjeF N-terminal domain containing 3	protein coding gene	no	.	5.866	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
TRABD2A_LS012	chr2:84842007|84870225:-	TRABD2A	TraB domain containing 2A	protein coding gene	no	ENST00000409520.6;ENST00000409133.1	14.564	14.584	1.876	0.527(5046)	0.556(390)	0.623(10822)	non tumor-specific	exon_skip	yes
EPG5_LS042	chr18:45934966|45939600:-	EPG5	ectopic P-granules autophagy protein 5 homolog	protein coding gene	no	ENST00000282041.10;ENST00000649336.1;ENST00000587974.1	5.358	3.361	3.691	0.65(6227)	0.816(573)	0.889(15457)	non tumor-specific	exon_skip	yes
ACSBG1_LS025	chr15:78209249|78212549:-	ACSBG1	acyl-CoA synthetase bubblegum family member 1	protein coding gene	no	ENST00000559241.5	1.238	0.525	2.427	0.009(91)	0.009(6)	0.076(1322)	non tumor-specific	exon_skip	yes
ANKRD13C_LS015	chr1:70315566|70324853:-	ANKRD13C	ankyrin repeat domain 13C	protein coding gene	no	ENST00000370944.8;ENST00000498735.1	19.755	15.777	11.963	0.939(8995)	0.983(690)	0.968(16834)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HIST1H4PS1_UP_LS0005	chr6:27710889|27711090:+	HIST1H4PS1	H4 clustered histone 10, pseudogene	pseudogene	no	.	2.944	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP236383.2_UP_LS0138	chr21:8398952|8443181:-	FP236383.2	-	lncRNA gene	no	.	269.830	6.084	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL1A2_LS035	chr7:94415270|94416405:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	ENST00000297268.10;ENST00000620463.1;ENST00000488298.5;ENST00000473573.5	506.366	270.444	164.770	0.983(9416)	0.996(699)	0.964(16763)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TXNDC11_LS0026	chr16:11700564|11703967:-	TXNDC11	thioredoxin domain containing 11	protein coding gene	no	.	1.409	0.284	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SERPINA10_LS0011	chr14:94293047|94293189:-	SERPINA10	serpin family A member 10	protein coding gene	no	.	1.563	1.280	0.000	0.003(33)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AC112229.3_LS0007	chr2:110424142|110425098:-	AC112229.3	-	protein coding gene	no	.	1.915	0.454	0.000	0.026(253)	0.014(10)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SEC14L6_LS0011	chr22:30532856|30533636:-	SEC14L6	SEC14 like lipid binding 6	protein coding gene	no	.	3.776	0.664	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TATDN1_LS014	chr8:124503951|124504275:-	TATDN1	TatD DNase domain containing 1	protein coding gene	no	ENST00000522810.5;ENST00000522810.5	5.629	2.549	1.426	0.882(8452)	0.866(608)	0.707(12291)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CCDC30_LS034	chr1:42589483|42590315:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000471699.1	0.234	0.114	0.779	0.23(2200)	0.349(245)	0.176(3062)	non tumor-specific	alt_3prime;intron_retention	yes
ZNF852_LS002	chr3:44500637|44502542:-	ZNF852	zinc finger protein 852	protein coding gene	no	ENST00000650400.1;ENST00000489411.1	1.473	0.814	2.058	0.762(7302)	0.812(570)	0.803(13954)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GEMIN5_LS006	chr5:154898650|154899191:-	GEMIN5	gem nuclear organelle associated protein 5	protein coding gene	no	ENST00000285873.7	19.062	10.457	10.049	0.971(9299)	0.99(695)	0.97(16860)	non tumor-specific	exon_skip	yes
UN_AC244517.3_UP_LS0006	chr5:141224960|141247034:+	AC244517.3	-	pseudogene	no	.	4.480	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF292_LS001	chr6:87152869|87155191:+	ZNF292	zinc finger protein 292	protein coding gene	yes	ENST00000392985.3	0.436	0.151	0.716	0.056(538)	0.054(38)	0.189(3282)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GLYAT_LS007	chr11:58724511|58728664:-	GLYAT	glycine-N-acyltransferase	protein coding gene	no	ENST00000529732.5	0.163	0.351	0.762	0.041(392)	0.155(109)	0.014(235)	non tumor-specific	nAS	yes
UN_NACAD_LS0022	chr7:45083951|45084085:+	NACAD	NAC alpha domain containing	protein coding gene	no	.	4.768	0.599	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
SIPA1L1_LS014	chr14:71414102|71415976:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000557469.1	0.335	0.003	0.747	0.024(226)	0.006(4)	0.001(10)	non tumor-specific	nAS	yes
UN_CTBS_UP_LS0006	chr1:84596535|84597949:-	CTBS	chitobiase	protein coding gene	no	.	2.138	0.844	0.000	0.009(89)	0.034(24)	0(0)	non tumor-specific	nAS	no
UN_ENPP7P11_UP_LS0039	chr4:9651113|9658948:+	ENPP7P11	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 11	pseudogene	no	.	1.626	0.475	0.000	0.012(112)	0.004(3)	0(0)	non tumor-specific	nAS	no
TMPRSS13_LS012	chr11:117914509|117917170:-	TMPRSS13	transmembrane serine protease 13	protein coding gene	no	.;.	5.887	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ETV5_LS007	chr3:186066072|186077993:-	ETV5	ETS variant transcription factor 5	protein coding gene	no	ENST00000484223.1	0.913	0.264	0.707	0.01(93)	0.004(3)	0.018(318)	non tumor-specific	exon_skip	yes
UN_UBA1_LS0091	chrX:47206113|47206225:+	UBA1	ubiquitin like modifier activating enzyme 1	protein coding gene	no	.	21.914	7.358	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_INTS13_LS0018	chr12:26922696|26924355:-	INTS13	integrator complex subunit 13	protein coding gene	no	.	8.005	0.932	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SF3B2_LS0016	chr11:66057375|66058081:+	SF3B2	splicing factor 3b subunit 2	protein coding gene	no	.	20.799	3.357	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
TMEM131_LS047	chr2:97927487|97995476:-	TMEM131	transmembrane protein 131	protein coding gene	no	ENST00000186436.9;ENST00000418629.6;ENST00000489507.1	2.753	2.420	5.087	0.791(7582)	0.883(620)	0.931(16186)	non tumor-specific	exon_skip	yes
UN_INHBA-AS1_LS0006	chr7:41706314|41708853:-	INHBA-AS1	INHBA antisense RNA 1	lncRNA gene	no	.	1.715	2.365	0.000	0.003(30)	0.026(18)	0(0)	non tumor-specific	nAS	no
DNAH11_LS027	chr7:21618473|21619100:+	DNAH11	dynein axonemal heavy chain 11	protein coding gene	no	ENST00000465593.1	0.287	0.043	0.661	0.024(233)	0.033(23)	0.017(303)	non tumor-specific	alt_5prime	yes
AC011476.3_LS003	chr19:55006464|55042800:+	AC011476.3	-	lncRNA gene	no	ENST00000593060.5	1.107	0.501	0.924	0.204(1950)	0.194(136)	0.32(5562)	non tumor-specific	nAS	yes
ZNF91_LS020	chr19:23339260|23342170:-	ZNF91	zinc finger protein 91	protein coding gene	no	ENST00000599281.1	0.387	0.315	1.403	0.372(3563)	0.459(322)	0.605(10519)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SH3D21_LS0011	chr1:36317841|36319071:+	SH3D21	SH3 domain containing 21	protein coding gene	no	.	1.679	0.190	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_NUDT3_UP_LS0002	chr6:34425221|34744160:-	NUDT3	nudix hydrolase 3	protein coding gene	no	.	0.298	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HERC2P2_LS0118	chr15:22587391|22589893:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	12.411	1.152	0.000	0.02(187)	0.01(7)	0(0)	non tumor-specific	nAS	no
LINC01347_LS013	chr1:243089379|243091531:-	LINC01347	long intergenic non-protein coding RNA 1347	pseudogene	no	ENST00000627498.2	1.076	0.281	0.710	0.124(1188)	0.09(63)	0.201(3489)	non tumor-specific	nAS	yes
RAB32_LS002	chr6:146549741|146554456:+	RAB32	RAB32, member RAS oncogene family	protein coding gene	no	ENST00000367495.3	118.149	65.833	59.329	0.965(9247)	0.962(675)	0.977(16982)	non tumor-specific	nAS	yes
SLC12A6_LS030	chr15:34275389|34318561:-	SLC12A6	solute carrier family 12 member 6	protein coding gene	no	ENST00000290209.9	3.468	2.960	2.358	0.611(5851)	0.796(559)	0.746(12975)	non tumor-specific	exon_skip	yes
UN_MUC3A_LS0163	chr7:100958729|100958883:-	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	2.502	2.917	0.000	0.047(454)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_CCDC183_LS0030	chr9:136806963|136807261:-	CCDC183	coiled-coil domain containing 183	protein coding gene	no	.	1.228	0.600	0.000	0.139(1331)	0.239(168)	0(0)	non tumor-specific	nAS	no
POM121C_LS007	chr7:75425708|75426362:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	ENST00000615331.4;ENST00000607367.5;ENST00000439629.2;ENST00000479864.1	31.745	17.227	20.936	0.959(9186)	0.984(691)	0.978(16996)	non tumor-specific	exon_skip	yes
AL137847.2_LS003	chr9:83276559|83279157:+	AL137847.2	-	lncRNA gene	no	ENST00000458111.1	0.208	0.123	0.763	0.054(522)	0.127(89)	0.09(1562)	non tumor-specific	nAS	yes
UN_MCM7_LS0050	chr7:100098288|100098578:-	MCM7	minichromosome maintenance complex component 7	protein coding gene	no	.	33.133	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SIGLEC6_LS014	chr19:51531519|51531582:-	SIGLEC6	sialic acid binding Ig like lectin 6	protein coding gene	no	ENST00000346477.7;ENST00000359982.8;ENST00000343300.8;ENST00000425629.7;ENST00000391797.3;ENST00000489837.1	1.197	0.485	0.964	0.121(1159)	0.254(178)	0.276(4793)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
KCNV1_LS001	chr8:109968599|109972258:-	KCNV1	potassium voltage-gated channel modifier subfamily V member 1	protein coding gene	no	ENST00000524391.5;ENST00000297404.1	1.926	1.738	2.361	0.141(1351)	0.1(70)	0.158(2755)	non tumor-specific	alt_5prime	yes
UN_MIA3_LS0013	chr1:222644087|222645554:+	MIA3	MIA SH3 domain ER export factor 3	protein coding gene	no	.	2.071	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEP126_LS0017	chr11:101981964|101983137:+	CEP126	centrosomal protein 126	protein coding gene	no	.	2.528	0.133	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM5_LS028	chr3:50106864|50107482:+	RBM5	RNA binding motif protein 5	protein coding gene	yes	ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5;ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5;ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5	46.048	28.959	126.882	0.991(9491)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC007881.2_LS0008	chr2:71050334|71055179:+	AC007881.2	-	lncRNA gene	no	.	3.771	1.070	0.000	0.065(622)	0.044(31)	0(0)	non tumor-specific	nAS	no
HIBADH_LS009	chr7:27629492|27632336:-	HIBADH	3-hydroxyisobutyrate dehydrogenase	protein coding gene	no	ENST00000265395.6;ENST00000428288.2;ENST00000425715.1	112.552	124.603	48.920	0.992(9502)	0.997(700)	0.978(16994)	non tumor-specific	nAS	yes
UN_NR3C1_LS0043	chr5:143404916|143405150:-	NR3C1	nuclear receptor subfamily 3 group C member 1	protein coding gene	no	.	2.519	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CNTLN_LS010	chr9:17330808|17332605:+	CNTLN	centlein	protein coding gene	no	ENST00000380647.7	3.446	1.577	2.912	0.542(5197)	0.608(427)	0.857(14890)	non tumor-specific	nAS	yes
IFT122_LS017	chr3:129458677|129459315:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000510524.5	0.041	0.005	0.677	0.01(96)	0.006(4)	0.084(1465)	non tumor-specific	exon_skip;mutex_exons	yes
UN_KRBOX4_LS0012	chrX:46449908|46450431:+	KRBOX4	KRAB box domain containing 4	protein coding gene	no	.	0.654	0.339	0.000	0.009(83)	0.016(11)	0(0)	non tumor-specific	nAS	no
BIRC7_LS004	chr20:63236445|63237903:+	BIRC7	baculoviral IAP repeat containing 7	protein coding gene	no	ENST00000342412.10;ENST00000217169.7;ENST00000342412.10;ENST00000217169.7;ENST00000342412.10;ENST00000217169.7	21.617	1.157	1.283	0.39(3736)	0.165(116)	0.374(6500)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TTBK1_LS0007	chr6:43255644|43255737:+	TTBK1	tau tubulin kinase 1	protein coding gene	no	.	2.313	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ATR_LS056	chr3:142561421|142562232:-	ATR	serpin family A member 2 (gene/pseudogene)	protein coding gene	yes	ENST00000350721.8;ENST00000515149.2;ENST00000507148.1	5.591	3.221	2.460	0.696(6666)	0.802(563)	0.815(14166)	non tumor-specific	alt_3prime;exon_skip	yes
COMT_LS004	chr22:19941897|19961229:+	COMT	catechol-O-methyltransferase	protein coding gene	no	.;.	1.519	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM273_LS0020	chr10:49165796|49166755:-	TMEM273	transmembrane protein 273	protein coding gene	no	.	0.667	0.127	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AC087379.2_LS002	chr11:15704458|15705175:+	AC087379.2	-	lncRNA gene	no	ENST00000532242.1	3.999	1.940	0.934	0.073(696)	0.231(162)	0.147(2561)	non tumor-specific	nAS	yes
SPAG5_LS026	chr17:28585998|28586090:-	SPAG5	sperm associated antigen 5	protein coding gene	no	ENST00000321765.9;ENST00000584206.1	23.032	4.939	4.631	0.946(9064)	0.829(582)	0.912(15861)	non tumor-specific	nAS	yes
SYMPK_LS041	chr19:45854585|45863058:-	SYMPK	symplekin	protein coding gene	no	ENST00000598059.5	0.037	0.026	0.945	0.556(5324)	0.528(371)	0.532(9246)	non tumor-specific	alt_3prime	yes
UN_BOC_LS0028	chr3:113272703|113273205:+	BOC	BOC cell adhesion associated, oncogene regulated	protein coding gene	yes	.	4.174	0.519	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AL669831.3_LS0062	chr1:605865|631116:-	AL669831.3	-	pseudogene	no	.	17.878	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.1_LS0185	chr21:8214990|8215585:-	FP671120.1	-	lncRNA gene	no	.	71.626	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
PDGFRL_LS002	chr8:17576760|17577136:+	PDGFRL	platelet derived growth factor receptor like	protein coding gene	yes	ENST00000541323.1	0.567	0.048	0.642	0.024(227)	0.011(8)	0.024(414)	non tumor-specific	nAS	yes
UN_SPAG17_LS0035	chr1:118097851|118101740:-	SPAG17	sperm associated antigen 17	protein coding gene	no	.	2.198	1.216	0.000	0.021(203)	0.044(31)	0(0)	non tumor-specific	exon_skip	no
UN_E2F3_LS0056	chr6:20454335|20479846:+	E2F3	E2F transcription factor 3	protein coding gene	yes	.	1.121	0.169	0.000	0.016(152)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
COL5A2_LS044	chr2:189084037|189085160:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	ENST00000374866.8;ENST00000618828.1;ENST00000649066.1	51.700	19.266	17.529	0.876(8394)	0.939(659)	0.902(15671)	non tumor-specific	nAS	yes
RAPGEF2_LS022	chr4:159330498|159331431:+	RAPGEF2	Rap guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000644474.1;ENST00000644902.1;ENST00000264431.8	11.950	12.529	10.599	0.715(6852)	0.916(643)	0.964(16751)	non tumor-specific	nAS	yes
NFATC3_LS023	chr16:68191775|68221231:+	NFATC3	nuclear factor of activated T cells 3	protein coding gene	no	.;.	4.617	1.661	0.000	0.02(192)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
TPP1_LS020	chr11:6617153|6617359:-	TPP1	tripeptidyl peptidase 1	protein coding gene	no	ENST00000645620.1;ENST00000644683.1	10.764	3.600	0.000	0.004(37)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
FKBP10_LS010	chr17:41817203|41818089:+	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	ENST00000585664.5;ENST00000585922.5;ENST00000429461.5;ENST00000321562.8	78.629	23.734	34.161	0.968(9279)	0.991(696)	0.95(16516)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COG4_LS0026	chr16:70501089|70508406:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	.	15.167	3.427	0.000	0.012(119)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL512329.2_UP_LS0035	chr6:1592496|1593956:-	AL512329.2	-	lncRNA gene	no	.	4.548	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC88B_LS017	chr11:64343914|64349331:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	.;.	1.077	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
TRAIP_LS017	chr3:49843928|49844541:-	TRAIP	TRAF interacting protein	protein coding gene	no	ENST00000331456.6;ENST00000482582.5;ENST00000482243.1;ENST00000477546.5;ENST00000489948.5	4.984	1.233	2.194	0.913(8747)	0.774(543)	0.823(14314)	non tumor-specific	alt_3prime;exon_skip	yes
EPHB1_LS020	chr3:135154276|135162018:+	EPHB1	EPH receptor B1	protein coding gene	no	ENST00000398015.7;ENST00000647596.1;ENST00000493838.1	7.467	4.510	2.523	0.361(3454)	0.521(366)	0.651(11316)	non tumor-specific	nAS	yes
GAPDHS_LS002	chr19:35533594|35538307:+	GAPDHS	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein coding gene	no	ENST00000586334.1	0.316	0.000	0.745	0.04(385)	0(0)	0.006(103)	non tumor-specific	exon_skip	yes
UN_DNASE1L1_LS0048	chrX:154411357|154411891:-	DNASE1L1	deoxyribonuclease 1 like 1	protein coding gene	no	.	2.869	1.148	0.000	0.12(1149)	0.105(74)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ARHGEF37_LS0003	chr5:149564882|149597759:+	ARHGEF37	Rho guanine nucleotide exchange factor 37	protein coding gene	no	.	1.319	0.297	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
IDE_LS037	chr10:92558922|92559034:-	IDE	insulin degrading enzyme	protein coding gene	no	ENST00000478361.6	2.084	0.175	0.659	0.001(7)	0.001(1)	0.046(792)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CUL9_LS0040	chr6:43206510|43213154:+	CUL9	cullin 9	protein coding gene	no	.	2.751	0.149	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NEDD1_LS013	chr12:96907624|96917621:+	NEDD1	NEDD1 gamma-tubulin ring complex targeting factor	protein coding gene	no	ENST00000555806.5;ENST00000553609.5;ENST00000555806.5;ENST00000553609.5	0.044	0.069	0.673	0.396(3793)	0.399(280)	0.178(3090)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EEF1DP4_UP_LS0012	chr7:64852116|64858207:+	EEF1DP4	eukaryotic translation elongation factor 1 delta pseudogene 4	pseudogene	no	.	2.518	0.471	0.000	0.02(189)	0.016(11)	0(0)	non tumor-specific	nAS	no
COL24A1_LS041	chr1:85960880|85961249:-	COL24A1	collagen type XXIV alpha 1 chain	protein coding gene	no	ENST00000426639.5	1.092	0.106	0.805	0.005(45)	0.001(1)	0.151(2631)	non tumor-specific	exon_skip	yes
EDIL3_LS012	chr5:84180521|84254084:-	EDIL3	EGF like repeats and discoidin domains 3	protein coding gene	no	ENST00000380138.3	7.253	6.845	3.862	0.693(6642)	0.838(588)	0.761(13232)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC092131.1_LS0007	chr16:64418171|64475689:+	AC092131.1	-	lncRNA gene	no	.	2.322	0.575	0.000	0.017(162)	0.006(4)	0(0)	non tumor-specific	nAS	no
MAN2A1_LS005	chr5:109755456|109767535:+	MAN2A1	mannosidase alpha class 2A member 1	protein coding gene	no	ENST00000261483.4	15.395	13.877	4.940	0.838(8033)	0.956(671)	0.914(15890)	non tumor-specific	nAS	yes
UN_DDX54_LS0045	chr12:113177093|113178112:-	DDX54	DEAD-box helicase 54	protein coding gene	no	.	1.815	0.006	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DDR1_LS0001	chr6:30881125|30883981:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	.	5.813	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC02198_LS0007	chr5:69027995|69029339:-	LINC02198	long intergenic non-protein coding RNA 2198	lncRNA gene	no	.	0.683	0.154	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	nAS	no
ADGRL3_LS031	chr4:62044549|62063505:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000507164.5;ENST00000508693.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5	0.367	0.067	1.200	0.072(691)	0.028(20)	0.148(2579)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TONSL_LS0005	chr8:144429712|144435286:+	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	.	0.530	0.142	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ISPD_LS0017	chr7:16374815|16376092:-	ISPD	CDP-L-ribitol pyrophosphorylase A	protein coding gene	no	.	2.156	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TTN-AS1_LS054	chr2:178542361|178582572:+	TTN-AS1	TTN antisense RNA 1	lncRNA gene	no	ENST00000419746.5;ENST00000586831.5	0.788	0.000	0.626	0.002(19)	0(0)	0.022(377)	non tumor-specific	nAS	yes
UN_PRIM2_LS0051	chr6:57537625|57544030:+	PRIM2	DNA primase subunit 2	protein coding gene	no	.	1.758	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UIMC1_LS013	chr5:176958154|176968555:-	UIMC1	ubiquitin interaction motif containing 1	protein coding gene	yes	ENST00000377227.8;ENST00000511320.5;ENST00000512031.5;ENST00000503273.1	19.553	11.336	21.171	0.983(9417)	0.991(696)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_IGFBP5_LS0322	chr2:216694944|216695455:+	IGFBP5	insulin like growth factor binding protein 5	protein coding gene	yes	.	1.487	1.639	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C2CD2L_LS0019	chr11:119110957|119111056:+	C2CD2L	C2CD2 like	protein coding gene	no	.	7.578	1.044	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
QRICH1_LS014	chr3:49057890|49076709:-	QRICH1	glutamine rich 1	protein coding gene	no	ENST00000395443.6;ENST00000357496.6;ENST00000424300.5;ENST00000395443.6;ENST00000357496.6;ENST00000424300.5	42.519	30.392	52.029	0.981(9398)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CDK4_LS019	chr12:57751696|57752175:-	CDK4	cyclin dependent kinase 4	protein coding gene	yes	ENST00000551800.5	1.061	0.318	1.505	0.383(3672)	0.403(283)	0.744(12926)	non tumor-specific	alt_3prime;exon_skip	yes
GALC_LS015	chr14:87968490|87976358:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000555000.5;ENST00000261304.6;ENST00000544807.6;ENST00000393569.6;ENST00000393568.8;ENST00000557316.5;ENST00000474294.6;ENST00000622264.4;ENST00000477716.3	17.813	17.204	13.654	0.955(9151)	0.99(695)	0.977(16977)	non tumor-specific	nAS	yes
KLKB1_LS014	chr4:186238365|186250243:+	KLKB1	kallikrein B1	protein coding gene	no	ENST00000511608.5;ENST00000264690.10;ENST00000513864.2;ENST00000511406.5;ENST00000511608.5;ENST00000264690.10;ENST00000513864.2;ENST00000511406.5	2.267	8.754	2.882	0.164(1571)	0.282(198)	0.765(13302)	non tumor-specific	alt_3prime;alt_5prime	yes
PHYKPL_LS015	chr5:178214885|178222852:-	PHYKPL	5-phosphohydroxy-L-lysine phospho-lyase	protein coding gene	no	.;.	1.190	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
NMNAT2_LS004	chr1:183278629|183283995:-	NMNAT2	nicotinamide nucleotide adenylyltransferase 2	protein coding gene	no	ENST00000294868.8;ENST00000287713.6	6.218	8.471	3.136	0.35(3357)	0.372(261)	0.684(11883)	non tumor-specific	nAS	yes
NAV3_LS014	chr12:78007445|78010841:+	NAV3	neuron navigator 3	protein coding gene	no	ENST00000550673.1	0.047	0.001	0.744	0.013(124)	0.017(12)	0.001(10)	non tumor-specific	nAS	yes
PKN1_LS030	chr19:14470682|14470771:+	PKN1	protein kinase N1	protein coding gene	no	ENST00000585839.5;ENST00000242783.10;ENST00000342216.8;ENST00000591461.1	372.164	166.688	213.015	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MSC-AS1_LS0036	chr8:72075462|72089948:-	MSC-AS1	MSC antisense RNA 1	lncRNA gene	no	.	5.898	0.512	0.000	0.006(60)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_SELENON_LS0004	chr1:25801160|25802012:+	SELENON	selenoprotein N	protein coding gene	no	.	3.342	0.335	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CHID1_LS0003	chr11:869345|869797:-	CHID1	chitinase domain containing 1	protein coding gene	no	.	4.633	0.769	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PEX19_LS001	chr1:160277387|160278131:-	PEX19	peroxisomal biogenesis factor 19	protein coding gene	no	ENST00000467711.5	0.605	0.322	1.248	0.586(5618)	0.617(433)	0.684(11897)	non tumor-specific	intron_retention	yes
UN_MUC17_LS0390	chr7:101038743|101039452:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.	14.019	4.296	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00271_LS003	chr6:135498000|135642193:+	LINC00271	long intergenic non-protein coding RNA 271	lncRNA gene	no	ENST00000421378.2	0.947	0.914	1.074	0.229(2190)	0.439(308)	0.262(4548)	non tumor-specific	nAS	yes
UN_SLC25A40_LS0019	chr7:87859288|87860072:-	SLC25A40	solute carrier family 25 member 40	protein coding gene	no	.	0.928	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SLC25A6_LS0057	chrX:1386591|1389486:+	SLC25A6	solute carrier family 25 member 6	protein coding gene	no	.	11.281	2.834	0.000	0.002(20)	0.01(7)	0(0)	non tumor-specific	nAS	no
ATP11A_LS002	chr13:112696911|112717322:+	ATP11A	ATPase phospholipid transporting 11A	protein coding gene	no	ENST00000419448.1	0.215	0.034	0.523	0.002(21)	0.001(1)	0(2)	non tumor-specific	nAS	yes
UN_LINC00676_UP_LS0004	chr13:109453189|109470967:+	LINC00676	long intergenic non-protein coding RNA 676	lncRNA gene	no	.	4.812	0.445	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ACBD6_LS0054	chr1:180502458|180502534:+	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	.	1.198	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAM120B_LS001	chr6:170291072|170317370:+	FAM120B	family with sequence similarity 120B	protein coding gene	no	ENST00000630384.2	0.029	0.033	0.716	0.131(1255)	0.201(141)	0.064(1119)	non tumor-specific	nAS	yes
UN_SLC38A10_LS0129	chr17:81283502|81289691:-	SLC38A10	solute carrier family 38 member 10	protein coding gene	no	.	4.214	1.399	0.000	0.028(266)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
UN_CRNDE_LS0013	chr16:54887020|54891402:-	CRNDE	colorectal neoplasia differentially expressed	lncRNA gene	no	.	3.496	0.330	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HNRNPA1P10_LS0009	chr19:11666264|11666358:-	HNRNPA1P10	heterogeneous nuclear ribonucleoprotein A1 pseudogene 10	pseudogene	no	.	85.584	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPFIBP2_LS0032	chr11:7604119|7610291:+	PPFIBP2	PPFIA binding protein 2	protein coding gene	no	.	0.599	0.375	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP000311.1_LS0027	chr21:33624756|33631486:-	AP000311.1	-	protein coding gene	no	.	4.930	0.388	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
FAM102B_LS011	chr1:108629657|108635431:+	FAM102B	family with sequence similarity 102 member B	protein coding gene	no	.;.	2.706	0.744	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ITGA5_LS0022	chr12:54395556|54397708:-	ITGA5	integrin subunit alpha 5	protein coding gene	yes	.	31.161	2.215	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC008740.1_LS002	chr16:21349430|21352100:+	AC008740.1	-	pseudogene	no	ENST00000549658.2	0.289	0.189	0.959	0.236(2260)	0.179(126)	0.417(7247)	non tumor-specific	nAS	yes
UN_ESR1_LS0077	chr6:151970362|152011656:+	ESR1	estrogen receptor 1	protein coding gene	yes	.	3.039	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AL450322.2_LS002	chr10:3752622|3759185:+	AL450322.2	-	lncRNA gene	no	ENST00000421629.2	0.217	0.000	0.664	0(2)	0(0)	0.004(63)	non tumor-specific	nAS	yes
SH3GL3_LS011	chr15:83587086|83588662:+	SH3GL3	SH3 domain containing GRB2 like 3, endophilin A3	protein coding gene	no	ENST00000427482.6;ENST00000563901.5;ENST00000324537.5	8.903	13.260	2.295	0.282(2698)	0.386(271)	0.513(8915)	non tumor-specific	exon_skip	yes
CADPS_LS039	chr3:62550115|62557405:-	CADPS	calcium dependent secretion activator	protein coding gene	no	ENST00000612439.4;ENST00000383710.8;ENST00000357948.7;ENST00000283269.13;ENST00000542833.1	5.328	4.461	2.216	0.228(2187)	0.117(82)	0.502(8733)	non tumor-specific	nAS	yes
DMKN_LS020	chr19:35500419|35500533:-	DMKN	dermokine	protein coding gene	no	ENST00000434389.5;ENST00000402589.6;ENST00000462721.5;ENST00000467532.5;ENST00000480502.5;ENST00000429837.5;ENST00000443640.5;ENST00000602781.5;ENST00000493979.5;ENST00000464894.5	0.715	0.528	7.835	0.797(7632)	0.919(645)	0.909(15793)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC010463.1_LS009	chr19:17276909|17282062:+	AC010463.1	-	protein coding gene	no	ENST00000596542.1	0.078	0.001	0.634	0.029(280)	0.003(2)	0.016(282)	non tumor-specific	nAS	yes
COL4A1_LS025	chr13:110183097|110183184:-	COL4A1	collagen type IV alpha 1 chain	protein coding gene	no	ENST00000375820.9;ENST00000649738.1	152.591	78.795	48.413	0.955(9153)	0.983(690)	0.936(16278)	non tumor-specific	alt_3prime	yes
UN_AP001267.5_LS0004	chr11:118401717|118406745:+	AP001267.5	-	protein coding gene	no	.	107.214	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_NUFIP1_LS0003	chr13:44949838|44965844:-	NUFIP1	nuclear FMR1 interacting protein 1	protein coding gene	no	.	2.757	0.385	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
B3GNTL1_LS002	chr17:82942682|82943822:-	B3GNTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein coding gene	no	ENST00000572267.1	1.547	0.649	1.418	0.752(7202)	0.614(431)	0.665(11552)	non tumor-specific	alt_3prime;intron_retention	yes
HMGA1_LS016	chr6:34240915|34242712:+	HMGA1	high mobility group AT-hook 1	protein coding gene	yes	ENST00000447654.5;ENST00000311487.9	339.654	65.313	45.703	0.996(9540)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
NOMO2_LS001	chr16:18417509|18417841:-	NOMO2	NODAL modulator 2	protein coding gene	no	ENST00000381474.7;ENST00000564991.5	1.534	0.974	0.694	0.774(7417)	0.785(551)	0.005(87)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AMOTL2_LS018	chr3:134371494|134374818:-	AMOTL2	angiomotin like 2	protein coding gene	no	ENST00000506107.1	0.127	0.095	0.802	0.311(2977)	0.427(300)	0.328(5708)	non tumor-specific	alt_5prime	yes
UN_PGM5P4_LS0004	chr2:113556580|113563136:+	PGM5P4	phosphoglucomutase 5 pseudogene 4	pseudogene	no	.	3.614	4.813	0.000	0.144(1383)	0.665(467)	0(0)	non tumor-specific	nAS	no
CPVL_LS006	chr7:29066121|29071773:-	CPVL	carboxypeptidase vitellogenic like	protein coding gene	no	ENST00000265394.9;ENST00000396276.7;ENST00000409850.5;ENST00000448959.5	47.088	42.406	22.736	0.983(9421)	0.997(700)	0.958(16657)	non tumor-specific	alt_3prime;exon_skip	yes
SRGAP3_LS007	chr3:9010387|9013308:-	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	ENST00000383836.7;ENST00000360413.7;ENST00000518265.5;ENST00000618999.4	7.474	5.945	3.636	0.507(4857)	0.605(425)	0.845(14683)	non tumor-specific	nAS	yes
UN_NPIPB3_LS0101	chr16:21404088|21404342:+	NPIPB3	nuclear pore complex interacting protein family member B3	protein coding gene	no	.	7.356	1.365	0.000	0.008(81)	0.004(3)	0(0)	non tumor-specific	nAS	no
ZNF273_LS006	chr7:64882785|64893412:+	ZNF273	zinc finger protein 273	protein coding gene	no	ENST00000527278.5	0.783	0.473	2.194	0.105(1009)	0.229(161)	0.65(11291)	non tumor-specific	alt_3prime;exon_skip	yes
ARL13B_LS008	chr3:93995944|93996563:+	ARL13B	ADP ribosylation factor like GTPase 13B	protein coding gene	no	ENST00000478400.3;ENST00000335438.7	0.339	0.372	0.999	0.555(5318)	0.718(504)	0.51(8866)	non tumor-specific	alt_3prime;exon_skip	yes
COL5A1_LS030	chr9:134774912|134780102:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	ENST00000371817.7;ENST00000618395.4	71.932	30.257	22.269	0.853(8172)	0.944(663)	0.913(15869)	non tumor-specific	nAS	yes
UN_VPS13D_LS0017	chr1:12304647|12308431:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	.	0.813	0.720	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
MED14_LS022	chrX:40697183|40701165:-	MED14	mediator complex subunit 14	protein coding gene	no	ENST00000324817.5	23.743	13.439	14.883	0.902(8639)	0.966(678)	0.974(16927)	non tumor-specific	exon_skip	yes
UN_HLA-T_UP_LS0013	chr6:29801319|29889387:+	HLA-T	major histocompatibility complex, class I, T (pseudogene)	pseudogene	no	.	30.226	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093802.2_UP_LS0002	chr2:239660601|239660688:+	AC093802.2	-	lncRNA gene	no	.	1.864	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
MIR9-3HG_LS019	chr15:89388746|89389345:+	MIR9-3HG	MIR9-3 host gene	lncRNA gene	no	ENST00000561037.5	0.291	0.012	0.878	0.027(258)	0.004(3)	0.01(176)	non tumor-specific	nAS	yes
UN_MUC20P1_UP_LS0004	chr3:195558606|195559638:+	MUC20P1	mucin 20, cell surface associated pseudogene 1	pseudogene	no	.	8.518	0.753	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00865_LS003	chr10:89835257|89837218:+	LINC00865	long intergenic non-protein coding RNA 865	lncRNA gene	no	ENST00000448963.5;ENST00000448490.1	1.115	1.473	0.890	0.022(212)	0.087(61)	0.029(508)	non tumor-specific	nAS	yes
COASY_LS017	chr17:42563322|42563961:+	COASY	Coenzyme A synthase	protein coding gene	no	ENST00000421097.6;ENST00000591779.5;ENST00000590958.5;ENST00000393818.2;ENST00000421097.6;ENST00000591779.5;ENST00000590958.5;ENST00000393818.2	56.383	41.213	59.212	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SLC26A9_LS0026	chr1:205935180|205935608:+	SLC26A9	solute carrier family 26 member 9	protein coding gene	no	.	5.467	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF254_LS0071	chr19:24058106|24058266:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	2.323	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	intron_retention	no
CHST11_LS002	chr12:104457514|104601906:+	CHST11	carbohydrate sulfotransferase 11	protein coding gene	no	ENST00000549260.5;ENST00000546689.1	7.026	1.770	3.275	0.85(8148)	0.87(611)	0.875(15216)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL513124.1_UP_LS0007	chr9:73943444|73978841:-	AL513124.1	-	pseudogene	no	.	2.798	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GART_LS0002	chr21:33504315|33504408:-	GART	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein coding gene	no	.	2.438	0.064	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_ARHGEF12_LS0046	chr11:120485820|120488363:-	ARHGEF12	Rho guanine nucleotide exchange factor 12	protein coding gene	yes	.	1.093	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC247036.1_UP_LS0164	chr14:106055756|106116848:+	AC247036.1	-	lncRNA gene	no	.	4.017	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
COA1_LS025	chr7:43648652|43656033:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.;.	3.565	0.374	0.000	0.029(276)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ANKRD53_LS010	chr2:70982697|70984123:+	ANKRD53	ankyrin repeat domain 53	protein coding gene	no	ENST00000272421.10;ENST00000441349.5;ENST00000460927.1	0.292	0.280	2.142	0.531(5089)	0.721(506)	0.74(12860)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL035530.2_LS012	chr6:159042308|159067239:+	AL035530.2	-	lncRNA gene	no	ENST00000646912.1	0.843	0.578	0.000	0.001(10)	0.003(2)	0(0)	non tumor-specific	nAS	yes
MYOM1_LS019	chr18:3116515|3119869:-	MYOM1	myomesin 1	protein coding gene	no	ENST00000356443.8;ENST00000400569.7;ENST00000261606.11	3.188	3.511	6.840	0.278(2659)	0.725(509)	0.915(15897)	non tumor-specific	exon_skip	yes
PTPN13_LS001	chr4:86594789|86635252:+	PTPN13	protein tyrosine phosphatase non-receptor type 13	protein coding gene	yes	ENST00000427191.6;ENST00000436978.5;ENST00000502971.5;ENST00000316707.10;ENST00000411767.6	2.596	3.577	2.272	0.572(5484)	0.761(534)	0.698(12129)	non tumor-specific	exon_skip	yes
UN_IGHG1_LS0023	chr14:105741593|105741731:-	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	291.020	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCMF1_UP_LS0011	chr2:84926348|84941214:+	KCMF1	potassium channel modulatory factor 1	protein coding gene	no	.	1.472	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHVIII-16-1_UP_LS0001	chr14:106174416|106511190:-	IGHVIII-16-1	immunoglobulin heavy variable (III)-16-1 (pseudogene)	no	no	.	45.402	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
DDX24_LS011	chr14:94062621|94081119:-	DDX24	DEAD-box helicase 24	protein coding gene	no	ENST00000544005.5	0.031	0.047	0.794	0.691(6618)	0.736(517)	0.131(2271)	non tumor-specific	exon_skip	yes
NOLC1_LS019	chr10:102160024|102160233:+	NOLC1	nucleolar and coiled-body phosphoprotein 1	protein coding gene	no	ENST00000605788.5;ENST00000405356.5;ENST00000464969.6;ENST00000488254.6;ENST00000603946.5;ENST00000370007.5	98.883	50.930	41.079	0.99(9481)	0.994(698)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_BCL2L1_LS0135	chr20:31666003|31721700:+	BCL2L1	BCL2 like 1	protein coding gene	yes	.	2.193	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TRAK1_LS023	chr3:42209922|42217247:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	.;.	3.231	1.085	0.000	0.019(179)	0.016(11)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_ABL1_LS0049	chr9:130874561|130874868:+	ABL1	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein coding gene	yes	.	1.697	0.293	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC14A2_LS021	chr18:45668022|45668349:+	SLC14A2	solute carrier family 14 member 2	protein coding gene	no	ENST00000586448.5;ENST00000255226.10	4.157	11.171	0.766	0.039(378)	0.13(91)	0.093(1618)	non tumor-specific	nAS	yes
UN_CRBN_LS0014	chr3:3154828|3156219:-	CRBN	cereblon	protein coding gene	no	.	2.608	1.847	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MAGED4B_LS018	chrX:52066453|52066865:-	MAGED4B	MAGE family member D4B	protein coding gene	no	ENST00000497164.5;ENST00000360134.10;ENST00000485287.5;ENST00000335504.9	13.168	4.805	0.806	0.831(7965)	0.879(617)	0.113(1962)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_GRM5_LS0006	chr11:88512348|88690326:+	GRM5	glutamate metabotropic receptor 5	protein coding gene	no	.	7.027	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL3_LS005	chr3:131469773|131471171:-	MRPL3	mitochondrial ribosomal protein L3	protein coding gene	no	ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5;ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5	232.645	94.050	93.018	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
IDH1_LS013	chr2:208253959|208254939:-	IDH1	isocitrate dehydrogenase (NADP(+)) 1	protein coding gene	yes	ENST00000345146.6;ENST00000462386.5;ENST00000417583.5;ENST00000451391.5;ENST00000481557.1	73.564	69.778	21.321	0.988(9470)	0.994(698)	0.975(16951)	non tumor-specific	alt_5prime	yes
UN_OR1H1P_UP_LS0007	chr9:122502870|122579953:+	OR1H1P	olfactory receptor family 1 subfamily H member 1 pseudogene	pseudogene	no	.	2.828	0.141	0.000	0.025(238)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_FBXL20_LS0060	chr17:39343241|39401359:-	FBXL20	F-box and leucine rich repeat protein 20	protein coding gene	no	.	0.714	0.025	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_PRDM4_LS0010	chr12:107741260|107743197:-	PRDM4	PR/SET domain 4	protein coding gene	yes	.	1.555	0.146	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
DOC2A_LS030	chr16:30010989|30011628:-	DOC2A	double C2 domain alpha	protein coding gene	no	ENST00000564233.5	0.611	0.000	0.863	0.01(94)	0.001(1)	0.035(603)	non tumor-specific	nAS	yes
PPP4R1_LS013	chr18:9563010|9563378:-	PPP4R1	protein phosphatase 4 regulatory subunit 1	protein coding gene	no	ENST00000578557.1	1.454	0.676	0.861	0.396(3794)	0.43(302)	0.459(7973)	non tumor-specific	alt_3prime	yes
ARHGEF38_LS012	chr4:105654169|105655603:+	ARHGEF38	Rho guanine nucleotide exchange factor 38	protein coding gene	no	ENST00000420470.2;ENST00000508036.2	5.290	2.932	2.848	0.347(3323)	0.618(434)	0.219(3812)	non tumor-specific	exon_skip	yes
UN_NEMF_UP_LS0039	chr14:49853864|49862619:-	NEMF	nuclear export mediator factor	protein coding gene	no	.	118.686	8.855	0.000	0.008(74)	0.006(4)	0(0)	non tumor-specific	nAS	no
FADS2_LS017	chr11:61837888|61840334:+	FADS2	fatty acid desaturase 2	protein coding gene	no	ENST00000257261.10;ENST00000522056.5;ENST00000518606.5;ENST00000278840.8;ENST00000517312.5;ENST00000521849.5	119.945	83.617	34.880	0.978(9374)	0.991(696)	0.978(16991)	non tumor-specific	nAS	yes
UN_NUDT5_LS0032	chr10:12187959|12195770:-	NUDT5	nudix hydrolase 5	protein coding gene	no	.	1.713	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MAST4_LS061	chr5:67153580|67160456:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11;ENST00000443808.1	7.528	7.330	4.243	0.782(7493)	0.94(660)	0.861(14973)	non tumor-specific	exon_skip	yes
SLC29A2_LS016	chr11:66367548|66367772:-	SLC29A2	solute carrier family 29 member 2	protein coding gene	no	ENST00000311161.11;ENST00000357440.6;ENST00000540386.5;ENST00000619145.4;ENST00000544554.5;ENST00000541567.5;ENST00000546034.1	21.106	9.355	11.873	0.829(7943)	0.89(625)	0.953(16567)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_HCFC1_LS0053	chrX:153951080|153951350:-	HCFC1	host cell factor C1	protein coding gene	no	.	5.411	1.348	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_MARK3_LS0010	chr14:103405573|103481999:-	MARK3	microtubule affinity regulating kinase 3	protein coding gene	no	.	5.640	2.083	0.000	0.003(32)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AC004889.1_LS0008	chr7:144196978|144199750:+	AC004889.1	-	lncRNA gene	no	.	0.679	0.243	0.000	0.001(12)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SFN_UP_LS0004	chr1:26817932|26832447:+	SFN	stratifin	protein coding gene	yes	.	3.510	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
TPD52L2_LS001	chr20:63865384|63869296:+	TPD52L2	TPD52 like 2	protein coding gene	no	ENST00000611972.4;ENST00000615907.4;ENST00000346249.8;ENST00000348257.9;ENST00000352482.8;ENST00000351424.8;ENST00000217121.9;ENST00000358548.4	78.969	43.488	67.686	0.957(9169)	0.964(677)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_MSI2_LS0054	chr17:57650673|57652099:+	MSI2	musashi RNA binding protein 2	protein coding gene	no	.	33.468	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CAPN12_LS0066	chr19:38744446|38762892:-	CAPN12	calpain 12	protein coding gene	no	.	1.406	0.519	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AC104257.1_LS002	chr8:131310712|131312556:+	AC104257.1	-	lncRNA gene	no	ENST00000519695.5;ENST00000524275.5;ENST00000519005.1	1.614	0.740	0.930	0.029(280)	0.017(12)	0.079(1366)	non tumor-specific	nAS	yes
UN_IL32_LS0190	chr16:3069416|3082038:-	IL32	interleukin 32	protein coding gene	no	.	2.529	0.137	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PBXIP1_LS0046	chr1:154945091|154945564:+	PBXIP1	PBX homeobox interacting protein 1	protein coding gene	no	.	3.937	1.799	0.000	0.006(56)	0.017(12)	0(0)	non tumor-specific	nAS	no
SMARCA4_LS029	chr19:11003159|11003340:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000344626.9;ENST00000643549.1;ENST00000646693.1;ENST00000642726.1;ENST00000646484.1;ENST00000644737.1;ENST00000642628.1;ENST00000643296.1;ENST00000647230.1;ENST00000646510.1;ENST00000429416.8;ENST00000645460.1;ENST00000541122.6;ENST00000589677.5;ENST00000444061.8;ENST00000590574.6;ENST00000413806.7;ENST00000450717.7;ENST00000591545.6;ENST00000643995.1;ENST00000644327.1;ENST00000644065.1;ENST00000644963.1;ENST00000643208.1;ENST00000642350.1;ENST00000645061.1;ENST00000644290.1;ENST00000647268.1;ENST00000644267.1;ENST00000643857.1;ENST00000646183.1;ENST00000646746.1;ENST00000643534.1;ENST00000646513.1;ENST00000647011.1	63.822	32.387	34.133	0.992(9504)	0.993(697)	0.979(17016)	non tumor-specific	nAS	yes
AC010655.2_LS003	chr7:128457299|128466563:+	AC010655.2	-	lncRNA gene	no	ENST00000493710.1	0.082	0.257	0.717	0.308(2954)	0.228(160)	0.139(2408)	non tumor-specific	nAS	yes
B4GALNT4_LS019	chr11:379701|379866:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	ENST00000329962.10	17.253	5.380	5.691	0.607(5814)	0.328(230)	0.801(13915)	non tumor-specific	nAS	yes
UN_RNF157_LS0031	chr17:76145564|76153125:+	RNF157	ring finger protein 157	protein coding gene	no	.	1.974	1.293	0.000	0.008(74)	0.007(5)	0(0)	non tumor-specific	nAS	no
POTEB_LS005	chr15:21858048|21865016:-	POTEB	POTE ankyrin domain family member B	protein coding gene	no	ENST00000435397.6	1.575	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	nAS	yes
SMIM15_LS002	chr5:61161227|61162217:-	SMIM15	small integral membrane protein 15	protein coding gene	no	ENST00000339020.7;ENST00000507416.1	64.938	43.939	21.847	0.991(9498)	0.994(698)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LRRC37A12P_UP_LS0002	chr1:32427536|32434733:-	LRRC37A12P	leucine rich repeat containing 37 member A12, pseudogene	pseudogene	no	.	0.957	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP1R16B_LS0008	chr20:38883540|38889595:+	PPP1R16B	protein phosphatase 1 regulatory subunit 16B	protein coding gene	no	.	0.949	0.145	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CELSR1_LS0019	chr22:46363551|46363996:-	CELSR1	cadherin EGF LAG seven-pass G-type receptor 1	protein coding gene	no	.	2.911	0.570	0.000	0.014(138)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TP53BP1_LS002	chr15:43408088|43408897:-	TP53BP1	tumor protein p53 binding protein 1	protein coding gene	yes	ENST00000382044.8;ENST00000263801.7;ENST00000476454.5;ENST00000411772.5;ENST00000382039.7;ENST00000450115.6	29.133	11.657	51.391	0.991(9490)	0.967(679)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FANCL_LS021	chr2:58198662|58204130:-	FANCL	FA complementation group L	protein coding gene	no	ENST00000403295.7;ENST00000233741.8;ENST00000402135.7;ENST00000403676.5;ENST00000449070.5;ENST00000427708.6;ENST00000417361.1	18.977	8.669	14.043	0.98(9393)	0.991(696)	0.964(16756)	non tumor-specific	nAS	yes
SPAG16_LS025	chr2:213924004|214013951:+	SPAG16	sperm associated antigen 16	protein coding gene	no	ENST00000480494.1	0.190	0.102	0.719	0.002(16)	0.006(4)	0.006(103)	non tumor-specific	exon_skip	yes
RGPD6_LS023	chr2:110562757|110563103:-	RGPD6	RANBP2 like and GRIP domain containing 6	protein coding gene	no	ENST00000329516.7;ENST00000330331.9	0.807	1.552	0.611	0.718(6882)	0.862(605)	0.005(95)	non tumor-specific	exon_skip	yes
ACTA1_LS001	chr1:229431642|229431721:-	ACTA1	actin alpha 1, skeletal muscle	protein coding gene	no	ENST00000366684.7;ENST00000366683.3	3.418	34.743	19.144	0.566(5425)	0.547(384)	0.955(16600)	non tumor-specific	alt_3prime;exon_skip	yes
AL391415.1_LS001	chr6:38714298|38715066:-	AL391415.1	-	lncRNA gene	no	ENST00000439844.2	0.144	0.016	0.677	0.003(28)	0.004(3)	0.004(65)	non tumor-specific	nAS	yes
BRD4_LS027	chr19:15269042|15272815:-	BRD4	bromodomain containing 4	protein coding gene	yes	ENST00000263377.6;ENST00000371835.8;ENST00000360016.9;ENST00000594841.5;ENST00000597315.5;ENST00000601071.1;ENST00000630599.2;ENST00000601941.1	46.134	27.327	34.835	0.977(9357)	0.991(696)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_RPL23AP22_UP_LS0011	chr1:194351947|194354305:-	RPL23AP22	ribosomal protein L23a pseudogene 22	pseudogene	no	.	1.168	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC082651.3_UP_LS0024	chr2:9810147|9814220:-	AC082651.3	-	lncRNA gene	no	.	2.968	0.151	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	nAS	no
PAM_LS009	chr5:102864567|102865823:+	PAM	peptidylglycine alpha-amidating monooxygenase	protein coding gene	no	ENST00000511839.5	0.025	0.005	0.673	0.333(3194)	0.442(310)	0.075(1299)	non tumor-specific	nAS	yes
UN_RBFOX1_LS0033	chr16:5900790|5905971:-	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	.	3.010	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.2_UP_LS0046	chr21:8209880|8253920:-	FP671120.2	-	lncRNA gene	no	.	667.931	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TNXB_LS044	chr6:32087874|32088785:-	TNXB	tenascin XB	protein coding gene	no	ENST00000613214.4	1.652	1.811	0.597	0.004(39)	0.033(23)	0.011(194)	non tumor-specific	nAS	yes
UN_PSMA1_LS0016	chr11:14506007|14507656:-	PSMA1	proteasome 20S subunit alpha 1	protein coding gene	no	.	8.934	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
EML5_LS037	chr14:88696952|88702446:-	EML5	EMAP like 5	protein coding gene	no	ENST00000554922.5;ENST00000380664.9;ENST00000553281.5	2.191	0.723	1.086	0.088(842)	0.164(115)	0.346(6017)	non tumor-specific	nAS	yes
UN_IFT122_LS0041	chr3:129512098|129513621:-	IFT122	intraflagellar transport 122	protein coding gene	no	.	2.221	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPY_LS0008	chr7:24285428|24289501:-	NPY	neuropeptide Y	protein coding gene	no	.	43.280	360.009	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL20A1_LS019	chr20:63312934|63313117:+	COL20A1	collagen type XX alpha 1 chain	protein coding gene	no	ENST00000358894.10;ENST00000479501.5;ENST00000422202.5	28.900	0.610	3.052	0.068(656)	0.011(8)	0.249(4335)	non tumor-specific	alt_3prime;exon_skip	yes
FAM206A_LS008	chr9:108936437|108939196:+	FAM206A	actin binding transcription modulator	protein coding gene	no	ENST00000322940.10;ENST00000445175.1	22.193	13.800	14.068	0.977(9358)	0.993(697)	0.977(16983)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SRRM2_LS021	chr16:2762210|2762601:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.;.	43.560	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
AL136988.2_LS002	chr1:230259763|230268303:-	AL136988.2	-	lncRNA gene	no	ENST00000440729.1	4.177	0.000	0.755	0.002(18)	0(0)	0.016(281)	non tumor-specific	nAS	yes
UN_SNTA1_LS0027	chr20:33410331|33412186:-	SNTA1	syntrophin alpha 1	protein coding gene	no	.	7.118	2.712	0.000	0.14(1339)	0.077(54)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
TOR1AIP1_LS014	chr1:179900167|179901302:+	TOR1AIP1	torsin 1A interacting protein 1	protein coding gene	no	ENST00000528443.6;ENST00000271583.7;ENST00000606911.6;ENST00000435319.8;ENST00000527391.5;ENST00000529091.5;ENST00000527867.5;ENST00000474875.5;ENST00000531726.5;ENST00000524653.1	57.147	53.268	47.195	0.973(9318)	0.989(694)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC003035.1_LS001	chrX:13980478|13988690:-	AC003035.1	-	lncRNA gene	no	ENST00000391359.2	0.151	0.040	0.731	0.057(548)	0.073(51)	0.089(1549)	non tumor-specific	nAS	yes
RPS15_LS015	chr19:1440253|1440349:+	RPS15	ribosomal protein S15	protein coding gene	no	ENST00000233609.8;ENST00000586686.6;ENST00000592588.6;ENST00000591032.1;ENST00000592623.5;ENST00000591804.6;ENST00000593052.5;ENST00000592700.2;ENST00000585665.2	1236.773	463.540	1975.657	0.915(8771)	0.907(637)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_REV3L_LS0044	chr6:111392972|111405465:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	.	6.725	0.228	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
AL031846.1_LS001	chr22:39091796|39092008:+	AL031846.1	-	pseudogene	no	ENST00000560933.5;ENST00000424436.1	0.643	0.253	1.032	0.317(3038)	0.268(188)	0.255(4425)	non tumor-specific	nAS	yes
ITIH4_LS025	chr3:52823741|52823823:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000441637.2;ENST00000491663.5;ENST00000537897.5	51.211	226.282	17.086	0.447(4282)	0.524(368)	0.969(16847)	non tumor-specific	intron_retention	yes
UN_SLC25A5P7_UP_LS0003	chr6:121453923|121480202:+	SLC25A5P7	solute carrier family 25 member 5 pseudogene 7	pseudogene	no	.	1.393	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC244205.1_LS0048	chr2:88860588|88861525:-	AC244205.1	-	lncRNA gene	no	.	52.103	26.171	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC25A53_LS0053	chrX:104132694|104136816:-	SLC25A53	solute carrier family 25 member 53	protein coding gene	no	.	0.947	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
RECQL5_LS015	chr17:75631010|75631150:-	RECQL5	RecQ like helicase 5	protein coding gene	no	ENST00000443199.6;ENST00000423245.6;ENST00000317905.9;ENST00000580707.1	26.317	14.897	17.042	0.971(9300)	0.98(688)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TBRG4_LS032	chr7:45109287|45111877:-	TBRG4	transforming growth factor beta regulator 4	protein coding gene	no	ENST00000475893.1	0.195	0.099	0.660	0.272(2608)	0.232(163)	0.012(216)	non tumor-specific	nAS	yes
UN_MAPKAP1_LS0060	chr9:125542334|125545930:+	MAPKAP1	MAPK associated protein 1	protein coding gene	no	.	3.617	1.185	0.000	0.003(24)	0.009(6)	0(0)	non tumor-specific	nAS	no
COPS8_LS011	chr2:237089994|237093663:+	COPS8	COP9 signalosome subunit 8	protein coding gene	no	ENST00000470452.5	6.087	2.199	1.558	0.437(4186)	0.333(234)	0.748(12994)	non tumor-specific	alt_3prime;exon_skip	yes
ELN_LS063	chr7:74063695|74065694:+	ELN	small integral membrane protein 6	protein coding gene	no	ENST00000445912.5;ENST00000621115.4;ENST00000252034.11;ENST00000358929.8;ENST00000320492.11;ENST00000414324.5;ENST00000380562.8;ENST00000380575.8;ENST00000380584.8;ENST00000458204.5;ENST00000357036.9;ENST00000429192.5;ENST00000380553.8;ENST00000380576.9;ENST00000320399.10	62.630	51.509	106.552	0.895(8577)	0.994(698)	0.965(16772)	non tumor-specific	exon_skip;mutex_exons	yes
PNPLA7_LS021	chr9:137498245|137500691:-	PNPLA7	patatin like phospholipase domain containing 7	protein coding gene	no	ENST00000277531.8;ENST00000406427.5	5.533	6.841	16.096	0.521(4988)	0.906(636)	0.96(16691)	non tumor-specific	nAS	yes
UN_AHNAK_LS0647	chr11:62522152|62524883:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	1.740	2.775	0.000	0.002(23)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_MS4A4E_UP_LS0008	chr11:60507116|60527300:-	MS4A4E	membrane spanning 4-domains A4E	protein coding gene	no	.	2.106	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TSPOAP1-AS1_LS007	chr17:58337679|58346280:+	TSPOAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	lncRNA gene	no	ENST00000580022.5	0.046	0.138	0.863	0.208(1991)	0.236(166)	0.25(4341)	non tumor-specific	nAS	yes
NPLOC4_LS054	chr17:81629805|81629864:-	NPLOC4	NPL4 homolog, ubiquitin recognition factor	protein coding gene	no	ENST00000625705.1	0.086	0.012	0.593	0.005(45)	0.001(1)	0.007(122)	non tumor-specific	nAS	yes
AC023886.1_LS003	chr4:112525309|112530382:+	AC023886.1	-	lncRNA gene	no	ENST00000504009.1	4.314	0.196	1.556	0.036(348)	0.031(22)	0.111(1931)	non tumor-specific	nAS	yes
MRPL3_LS008	chr3:131487740|131489981:-	MRPL3	mitochondrial ribosomal protein L3	protein coding gene	no	ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5;ENST00000506487.1;ENST00000512877.1	123.191	57.949	69.502	0.998(9559)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
CCDC171_LS019	chr9:15729798|15744273:+	CCDC171	coiled-coil domain containing 171	protein coding gene	no	ENST00000380701.7	2.932	1.460	1.686	0.271(2600)	0.429(301)	0.747(12986)	non tumor-specific	nAS	yes
CBWD3_LS006	chr9:68243280|68245213:+	CBWD3	COBW domain containing 3	protein coding gene	no	ENST00000611426.4;ENST00000377349.6;ENST00000615061.4;ENST00000622755.4	0.041	0.382	0.707	0.863(8265)	0.919(645)	0.057(990)	non tumor-specific	exon_skip	yes
UN_PTPRN_LS0017	chr2:219300170|219300375:+	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	.	3.176	0.276	0.000	0.056(540)	0.001(1)	0(0)	non tumor-specific	nAS	no
THSD4_LS006	chr15:71243096|71256613:+	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	ENST00000355327.7	7.644	7.200	2.996	0.534(5119)	0.848(595)	0.731(12710)	non tumor-specific	exon_skip	yes
UN_LINC00615_UP_LS0008	chr12:90823727|90851587:+	LINC00615	long intergenic non-protein coding RNA 615	lncRNA gene	no	.	6.402	0.341	0.000	0.012(117)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01197_LS0010	chr15:95288199|95288302:-	LINC01197	long intergenic non-protein coding RNA 1197	lncRNA gene	no	.	3.353	0.524	0.000	0.007(68)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC011124.1_LS001	chr8:63466499|63469983:-	AC011124.1	-	lncRNA gene	no	ENST00000522086.1	0.153	0.000	0.811	0.001(9)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_CPB1_LS0013	chr3:148849009|148849328:-	CPB1	carboxypeptidase B1	protein coding gene	no	.	3.277	1.649	0.000	0.011(105)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01322_UP_LS0053	chr3:164619440|164687628:+	LINC01322	long intergenic non-protein coding RNA 1322	lncRNA gene	no	.	4.244	1.249	0.000	0.055(530)	0.114(80)	0(0)	non tumor-specific	nAS	no
TEX35_LS011	chr1:178521264|178523302:+	TEX35	testis expressed 35	protein coding gene	no	ENST00000367639.1	2.771	0.093	0.664	0.003(24)	0.001(1)	0.014(236)	non tumor-specific	exon_skip	yes
TTLL7_LS039	chr1:83942679|83947124:-	TTLL7	tubulin tyrosine ligase like 7	protein coding gene	no	ENST00000480174.5;ENST00000477524.5;ENST00000260505.12;ENST00000485638.5;ENST00000610996.1	2.843	3.026	6.652	0.468(4482)	0.67(470)	0.889(15449)	non tumor-specific	exon_skip	yes
PRKCA_LS020	chr17:66741721|66742622:+	PRKCA	protein kinase C alpha	protein coding gene	yes	ENST00000413366.7;ENST00000284384.6	15.691	13.673	5.872	0.857(8213)	0.962(675)	0.95(16507)	non tumor-specific	nAS	yes
TSPEAR_LS006	chr21:44525839|44527292:-	TSPEAR	thrombospondin type laminin G domain and EAR repeats	protein coding gene	no	ENST00000613245.5;ENST00000323084.8;ENST00000642437.1;ENST00000397916.1	4.231	0.210	1.014	0.047(448)	0.053(37)	0.173(3004)	non tumor-specific	intron_retention	yes
UN_PPDPF_LS0045	chr20:63521782|63521841:-	PPDPF	pancreatic progenitor cell differentiation and proliferation factor	protein coding gene	no	.	33.489	3.195	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PRH1_LS0002	chr12:10825193|10847045:-	PRH1	proline rich protein HaeIII subfamily 1	protein coding gene	no	.	2.401	0.438	0.000	0.028(268)	0.02(14)	0(0)	non tumor-specific	nAS	no
TNNT1_LS003	chr19:55133674|55133887:-	TNNT1	troponin T1, slow skeletal type	protein coding gene	no	ENST00000586649.2	0.007	0.000	1.734	0.006(56)	0.01(7)	0.071(1231)	non tumor-specific	mutex_exons	yes
GMNN_LS008	chr6:24775824|24777222:+	GMNN	geminin DNA replication inhibitor	protein coding gene	yes	ENST00000476555.5	0.497	0.648	1.227	0.679(6503)	0.62(435)	0.428(7442)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_DDX42_LS0015	chr17:63816966|63817700:+	DDX42	DEAD-box helicase 42	protein coding gene	no	.	11.873	0.385	0.000	0.009(87)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
SULF1_LS001	chr8:69466950|69469254:+	SULF1	sulfatase 1	protein coding gene	no	ENST00000528286.1	0.069	0.003	0.643	0.019(182)	0.004(3)	0.04(697)	non tumor-specific	exon_skip	yes
UN_BMPR2_UP_LS0003	chr2:202363651|202367876:+	BMPR2	bone morphogenetic protein receptor type 2	protein coding gene	yes	.	2.887	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
GLUD1P2_LS001	chr10:46759160|46768209:-	GLUD1P2	glutamate dehydrogenase 1 pseudogene 2	pseudogene	no	ENST00000630097.2;ENST00000631118.2	2.014	1.015	2.265	0.286(2737)	0.345(242)	0.789(13721)	non tumor-specific	nAS	yes
UN_SMG7_LS0029	chr1:183544481|183544994:-	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	.	1.679	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DDO_LS003	chr6:110404950|110408334:-	DDO	D-aspartate oxidase	protein coding gene	no	ENST00000368924.7	6.421	6.149	2.410	0.617(5910)	0.916(643)	0.766(13309)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMPRSS3_LS0011	chr21:42372680|42383052:+	TMPRSS3	transmembrane serine protease 4	protein coding gene	no	.	1.001	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MUC2_LS0120	chr11:1096662|1099196:-	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	.	7.670	2.289	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
TREM1_LS007	chr6:41282751|41286607:-	TREM1	triggering receptor expressed on myeloid cells 1	protein coding gene	no	ENST00000589614.5;ENST00000244709.8;ENST00000334475.10;ENST00000591620.1;ENST00000586287.1	6.240	12.044	2.277	0.819(7851)	0.761(534)	0.677(11760)	non tumor-specific	alt_3prime	yes
UN_SULT1C2_LS0005	chr2:108294354|108300850:+	SULT1C2	sulfotransferase family 1C member 4	protein coding gene	no	.	6.185	2.034	0.000	0.019(181)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MIA2_LS016	chr14:39277065|39279337:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	ENST00000553728.1;ENST00000640607.1;ENST00000554392.5;ENST00000555716.5;ENST00000341749.7;ENST00000396165.8;ENST00000396158.6;ENST00000280083.7;ENST00000341502.9;ENST00000348007.7;ENST00000553352.1	17.826	19.716	12.753	0.956(9162)	0.989(694)	0.976(16959)	non tumor-specific	alt_5prime;exon_skip	yes
PXDN_LS007	chr2:1644752|1645921:-	PXDN	peroxidasin	protein coding gene	no	ENST00000477093.1	0.027	0.024	0.617	0.471(4510)	0.426(299)	0.035(600)	non tumor-specific	nAS	yes
UN_RNU7-53P_UP_LS0025	chr5:130811692|130818081:-	RNU7-53P	RNA, U7 small nuclear 53 pseudogene	small non-coding RNA gene	no	.	2.123	0.134	0.000	0.029(277)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00630_LS0056	chrX:102877611|102878013:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	.	1.783	0.019	0.000	0.012(112)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SH3GL1_LS0078	chr19:4366570|4366926:-	SH3GL1	SH3 domain containing GRB2 like 1, endophilin A2	protein coding gene	no	.	36.007	2.132	0.000	0.007(63)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_CCDC138_LS0011	chr2:108816043|108839185:+	CCDC138	coiled-coil domain containing 138	protein coding gene	no	.	1.985	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LOXHD1_LS0011	chr18:46638183|46639616:-	LOXHD1	lipoxygenase homology domains 1	protein coding gene	no	.	2.756	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4A1_LS040	chr17:7577916|7578342:+	EIF4A1	eukaryotic translation initiation factor 4A1	protein coding gene	no	ENST00000582746.5;ENST00000582746.5	135.574	61.790	1.600	0.243(2325)	0.345(242)	0.638(11084)	non tumor-specific	alt_5prime;exon_skip	yes
MTA3_LS016	chr2:42614194|42640173:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	ENST00000491314.1	0.061	0.022	0.746	0.627(6007)	0.641(450)	0.213(3695)	non tumor-specific	exon_skip	yes
UN_GRIK2_LS0020	chr6:101889754|101924601:+	GRIK2	glutamate ionotropic receptor kainate type subunit 5	protein coding gene	no	.	0.751	0.156	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CDK5RAP1_LS012	chr20:33372697|33387323:-	CDK5RAP1	CDK5 regulatory subunit associated protein 1	protein coding gene	no	ENST00000427097.5	0.109	0.042	0.619	0.012(114)	0.004(3)	0.014(248)	non tumor-specific	mutex_exons	yes
LINC02323_LS002	chr14:102550508|102554710:+	LINC02323	long intergenic non-protein coding RNA 2323	lncRNA gene	no	ENST00000559946.1	1.098	0.216	0.761	0.074(713)	0.046(32)	0.028(491)	non tumor-specific	nAS	yes
UN_FAM106A_LS0003	chr17:18519674|18532506:-	FAM106A	family with sequence similarity 106 member A	lncRNA gene	no	.	1.453	0.409	0.000	0.009(90)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_NEK7_LS0030	chr1:198292845|198292945:+	NEK7	NIMA related kinase 7	protein coding gene	no	.	3.097	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXN2_LS0036	chr22:36467578|36467729:+	TXN2	thioredoxin 2	protein coding gene	no	.	2.168	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01159_LS002	chr2:104869950|104872246:-	LINC01159	long intergenic non-protein coding RNA 1159	lncRNA gene	no	ENST00000434764.1	1.010	0.934	2.718	0.201(1927)	0.219(154)	0.186(3234)	non tumor-specific	nAS	yes
NDUFB4_LS008	chr3:120596646|120601173:+	NDUFB4	NADH:ubiquinone oxidoreductase subunit B4	protein coding gene	no	.;.	93.326	31.627	0.000	0.027(262)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ACSL5_LS008	chr10:112404575|112404705:+	ACSL5	acyl-CoA synthetase long chain family member 5	protein coding gene	no	ENST00000354655.8;ENST00000479936.1;ENST00000393081.5;ENST00000356116.5;ENST00000433418.5;ENST00000354273.4	46.755	54.037	9.273	0.913(8746)	0.986(692)	0.963(16745)	non tumor-specific	nAS	yes
AC015845.1_LS001	chr17:57912481|57915016:+	AC015845.1	-	lncRNA gene	no	ENST00000580184.1	0.205	0.125	0.750	0.01(100)	0.01(7)	0.003(47)	non tumor-specific	nAS	yes
LINC02126_LS001	chr16:65142099|65175166:-	LINC02126	long intergenic non-protein coding RNA 2126	lncRNA gene	no	ENST00000563754.1	0.584	0.217	0.898	0.028(269)	0.063(44)	0.045(783)	non tumor-specific	nAS	yes
UN_LPP_LS0154	chr3:188882751|188883010:-	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	.	0.915	0.480	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0041	chr6:112591092|112591854:+	AL360085.1	-	pseudogene	no	.	1.797	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
AC104667.2_LS005	chr2:237591267|237591872:+	AC104667.2	-	lncRNA gene	no	ENST00000452801.1;ENST00000452801.1;ENST00000452801.1	2.921	1.883	1.459	0.47(4502)	0.604(424)	0.205(3572)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GORASP2_LS0016	chr2:170951458|170954655:+	GORASP2	golgi reassembly stacking protein 2	protein coding gene	no	.	6.001	0.902	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ALPK2_LS017	chr18:58544675|58578814:-	ALPK2	alpha kinase 2	protein coding gene	no	ENST00000587399.1	0.197	0.075	1.177	0.091(872)	0.105(74)	0.128(2217)	non tumor-specific	exon_skip	yes
UN_KYAT1_LS0040	chr9:128847643|128881903:-	KYAT1	kynurenine aminotransferase 1	protein coding gene	no	.	0.756	0.023	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TMEM8A_LS0099	chr16:383429|386763:+	TMEM8A	post-glycosylphosphatidylinositol attachment to proteins 6	protein coding gene	no	.	1.517	0.690	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
DNAJC1_LS015	chr10:21920963|21929040:-	DNAJC1	DnaJ heat shock protein family (Hsp40) member C1	protein coding gene	no	ENST00000476103.3;ENST00000376946.2	0.136	0.136	1.129	0.6(5746)	0.564(396)	0.54(9392)	non tumor-specific	exon_skip	yes
HSPA4L_LS012	chr4:127805224|127805687:+	HSPA4L	heat shock protein family A (Hsp70) member 4 like	protein coding gene	no	ENST00000508776.5;ENST00000296464.8;ENST00000508549.5;ENST00000505726.1	9.830	5.910	4.148	0.714(6839)	0.815(572)	0.869(15101)	non tumor-specific	nAS	yes
UN_RIPK2_UP_LS0002	chr8:89157172|89166646:+	RIPK2	receptor interacting serine/threonine kinase 2	protein coding gene	no	.	1.748	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC151_LS013	chr19:11426784|11426873:-	CCDC151	coiled-coil domain containing 151	protein coding gene	no	ENST00000356392.8;ENST00000591345.5;ENST00000586836.5	2.806	2.605	1.464	0.247(2368)	0.332(233)	0.397(6900)	non tumor-specific	exon_skip	yes
UN_RHBDF1_LS0036	chr16:65039|72509:-	RHBDF1	rhomboid 5 homolog 1	protein coding gene	no	.	0.862	0.216	0.000	0.029(282)	0.028(20)	0(0)	non tumor-specific	alt_5prime	no
UN_VEGFA_LS0024	chr6:43773133|43774341:+	VEGFA	vascular endothelial growth factor A	protein coding gene	yes	.	2.698	0.256	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_MRPL20_UP_LS0004	chr1:1413951|1414663:-	MRPL20	mitochondrial ribosomal protein L20	protein coding gene	no	.	2.424	0.273	0.000	0.021(202)	0.004(3)	0(0)	non tumor-specific	nAS	no
MTMR1_LS021	chrX:150730210|150730525:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000493995.6;ENST00000485376.5;ENST00000370390.7;ENST00000542156.5;ENST00000445323.6;ENST00000488357.1;ENST00000493480.1	17.484	10.668	12.093	0.953(9129)	0.981(689)	0.974(16931)	non tumor-specific	nAS	yes
RIF1_LS019	chr2:151437351|151438684:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000444746.6;ENST00000453091.6;ENST00000428287.6;ENST00000243326.9;ENST00000414861.6;ENST00000430328.6	8.394	4.592	4.836	0.705(6759)	0.821(576)	0.871(15139)	non tumor-specific	nAS	yes
ERN2_LS039	chr16:23709270|23710172:-	ERN2	endoplasmic reticulum to nucleus signaling 2	protein coding gene	no	ENST00000562562.1	3.922	0.236	3.104	0.114(1092)	0.093(65)	0.086(1488)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SPOUT1_UP_LS0002	chr9:128830005|128833227:-	SPOUT1	SPOUT domain containing methyltransferase 1	protein coding gene	no	.	5.129	0.062	0.000	0.013(122)	0.003(2)	0(0)	non tumor-specific	nAS	no
SERINC2_LS023	chr1:31423854|31424683:+	SERINC2	serine incorporator 2	protein coding gene	no	ENST00000373710.5;ENST00000536859.5;ENST00000487207.5;ENST00000373709.7;ENST00000491976.1;ENST00000536384.2	138.412	122.449	11.393	0.975(9345)	0.981(689)	0.921(16003)	non tumor-specific	exon_skip	yes
UN_FLNB_LS0120	chr3:58169793|58170554:+	FLNB	filamin B	protein coding gene	no	.	20.320	2.990	0.000	0.013(120)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_TUBGCP4_LS0011	chr15:43383504|43385394:+	TUBGCP4	tubulin gamma complex associated protein 4	protein coding gene	no	.	0.417	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
SUPT20H_LS008	chr13:37010655|37012192:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000484078.5;ENST00000490716.5;ENST00000469488.6;ENST00000350612.10	20.387	7.262	18.191	0.98(9392)	0.967(679)	0.978(17004)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CBWD4P_UP_LS0022	chr9:65481967|65485005:-	CBWD4P	COBW domain containing 4, pseudogene	pseudogene	no	.	2.253	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC183_LS012	chr9:136806238|136806504:+	CCDC183	coiled-coil domain containing 183	protein coding gene	no	ENST00000479371.5;ENST00000338005.6;ENST00000496839.5	1.409	0.367	1.531	0.274(2622)	0.272(191)	0.61(10602)	non tumor-specific	intron_retention	yes
UN_CASD1_LS0002	chr7:94518323|94522845:+	CASD1	CAS1 domain containing 1	protein coding gene	no	.	1.906	0.971	0.000	0.031(294)	0.048(34)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FAIM2_LS0031	chr12:49891774|49891955:-	FAIM2	Fas apoptotic inhibitory molecule 2	protein coding gene	no	.	1.474	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
MSRA_LS010	chr8:10245223|10250423:+	MSRA	methionine sulfoxide reductase A	protein coding gene	no	ENST00000521209.6	0.353	0.480	1.010	0.342(3273)	0.449(315)	0.318(5521)	non tumor-specific	alt_3prime	yes
MICALL2_LS016	chr7:1436856|1437535:-	MICALL2	MICAL like 2	protein coding gene	no	ENST00000472100.5;ENST00000467394.5;ENST00000471899.5;ENST00000479007.5;ENST00000413446.5;ENST00000297508.7;ENST00000487187.1	28.145	15.335	39.418	0.991(9499)	0.993(697)	0.973(16913)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UBAP2_LS004	chr9:33923293|33923379:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	ENST00000379239.8;ENST00000379238.5;ENST00000360802.5;ENST00000379235.5;ENST00000629575.2	62.527	29.253	34.634	0.99(9487)	0.993(697)	0.978(17008)	non tumor-specific	alt_3prime;intron_retention	yes
KCCAT333_LS002	chr7:17408128|17439667:+	KCCAT333	-	lncRNA gene	no	ENST00000635900.1;ENST00000636703.1	2.950	0.420	0.696	0.019(183)	0.007(5)	0.003(60)	non tumor-specific	nAS	yes
DIS3L2_LS002	chr2:231961765|232014848:+	DIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein coding gene	no	ENST00000441279.5	0.232	0.093	0.659	0.176(1686)	0.181(127)	0.011(188)	non tumor-specific	alt_3prime;exon_skip	yes
AC006042.2_LS001	chr7:7958618|7969772:-	AC006042.2	-	lncRNA gene	no	ENST00000428660.1	0.112	0.109	0.775	0.238(2282)	0.402(282)	0.14(2441)	non tumor-specific	nAS	yes
UN_RB1_LS0115	chr13:48581992|48599302:+	RB1	RB transcriptional corepressor 1	protein coding gene	yes	.	6.612	0.438	0.000	0.062(590)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_DKFZP434K028_LS0003	chr11:61752131|61755635:-	DKFZP434K028	-	lncRNA gene	no	.	4.052	1.001	0.000	0.041(390)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_NUP43_LS0027	chr6:149727198|149730686:-	NUP43	nucleoporin 43	protein coding gene	no	.	2.242	0.399	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RANBP2_LS0034	chr2:108773046|108773163:+	RANBP2	RAN binding protein 2	protein coding gene	no	.	1.781	0.957	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
STXBP5-AS1_LS024	chr6:147173948|147204413:-	STXBP5-AS1	STXBP5 antisense RNA 1	lncRNA gene	no	ENST00000427394.5;ENST00000367477.7	1.383	0.035	1.010	0.009(89)	0.007(5)	0.524(9108)	non tumor-specific	nAS	yes
CCND3_LS007	chr6:41937394|42030009:-	CCND3	cyclin D3	protein coding gene	no	ENST00000616010.4;ENST00000508143.5;ENST00000505884.5	0.039	0.589	0.697	0.28(2681)	0.34(239)	0.074(1294)	non tumor-specific	exon_skip;mutex_exons	yes
AC034245.1_LS001	chr5:56314848|56321115:-	AC034245.1	-	lncRNA gene	no	ENST00000504349.1	0.317	0.013	0.715	0.008(77)	0.006(4)	0.001(21)	non tumor-specific	nAS	yes
UN_AC108058.1_UP_LS0005	chr2:105347788|105349251:+	AC108058.1	-	lncRNA gene	no	.	1.100	0.046	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZNF559-ZNF177_LS007	chr19:9324780|9338494:+	ZNF559-ZNF177	ZNF559-ZNF177 readthrough	protein coding gene	no	ENST00000605071.5;ENST00000541595.6	0.113	0.268	1.399	0.696(6667)	0.803(564)	0.665(11557)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PCNPP4_UP_LS0008	chrX:75746074|75747034:-	PCNPP4	PEST containing nuclear protein pseudogene 4	pseudogene	no	.	0.113	0.002	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MYLK-AS2_UP_LS0002	chr3:123584735|123585647:+	MYLK-AS2	MYLK antisense RNA 2	lncRNA gene	no	.	1.327	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNFT2_LS0030	chr12:116833941|116836181:+	RNFT2	ring finger protein, transmembrane 2	protein coding gene	no	.	0.317	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
OXNAD1_LS021	chr3:16348032|16349176:+	OXNAD1	oxidoreductase NAD binding domain containing 1	protein coding gene	no	ENST00000607329.1	0.337	0.065	0.773	0.165(1585)	0.125(88)	0.177(3083)	non tumor-specific	exon_skip;intron_retention	yes
UN_LYST_LS0012	chr1:235712197|235712960:-	LYST	lysosomal trafficking regulator	protein coding gene	no	.	0.719	0.095	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_THOC5_LS0008	chr22:29517366|29517487:-	THOC5	THO complex 5	protein coding gene	no	.	3.364	0.379	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_CTIF_LS0034	chr18:48761689|48805836:+	CTIF	cap binding complex dependent translation initiation factor	protein coding gene	no	.	2.724	0.059	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
RNF183_LS008	chr9:113301855|113302195:-	RNF183	ring finger protein 183	protein coding gene	no	.;.;.	1.802	0.433	0.000	0.015(139)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IL18BP_LS0024	chr11:72002030|72002090:-	IL18BP	interleukin 18 binding protein	protein coding gene	no	.	3.212	0.456	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NBL1_LS0127	chr1:19658301|19658349:-	NBL1	NBL1, DAN family BMP antagonist	protein coding gene	no	.	3.953	0.817	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP8B3_LS012	chr19:1789989|1790757:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	ENST00000310127.10;ENST00000531925.5;ENST00000525591.5	1.077	0.106	0.759	0.045(427)	0.006(4)	0.053(918)	non tumor-specific	exon_skip	yes
NFRKB_LS015	chr11:129878355|129878464:-	NFRKB	nuclear factor related to kappaB binding protein	protein coding gene	no	ENST00000446488.7;ENST00000524794.5;ENST00000524746.5	19.146	12.119	16.625	0.946(9064)	0.976(685)	0.976(16965)	non tumor-specific	alt_3prime	yes
C1QTNF12_LS008	chr1:1244497|1246514:-	C1QTNF12	C1q and TNF related 12	protein coding gene	no	ENST00000330388.2	1.705	0.189	1.134	0.327(3134)	0.155(109)	0.317(5505)	non tumor-specific	nAS	yes
UN_ANPEP_LS0059	chr15:89802593|89803239:-	ANPEP	alanyl aminopeptidase, membrane	protein coding gene	no	.	2.985	0.357	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_URI1_LS0034	chr19:30015231|30015536:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	.	4.596	0.346	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SEC31A_LS057	chr4:82878918|82880799:-	SEC31A	SEC31 homolog A, COPII coat complex component	protein coding gene	no	ENST00000507340.5	0.363	0.467	2.137	0.617(5913)	0.654(459)	0.798(13870)	non tumor-specific	alt_3prime;exon_skip	yes
SPTBN1_LS026	chr2:54646475|54647131:+	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	ENST00000356805.8;ENST00000615901.4;ENST00000333896.5	192.161	206.932	162.690	0.99(9489)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime	yes
UN_ADH6_UP_LS0013	chr4:99286988|99318785:-	ADH6	alcohol dehydrogenase 6 (class V)	protein coding gene	no	.	51.587	127.957	0.000	0.01(99)	0.088(62)	0(0)	non tumor-specific	nAS	no
UN_CSF3R_LS0032	chr1:36475673|36475769:-	CSF3R	colony stimulating factor 3 receptor	protein coding gene	yes	.	6.503	2.266	0.000	0.007(68)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
AKAP14_LS003	chrX:119903392|119903495:+	AKAP14	A-kinase anchoring protein 14	protein coding gene	no	ENST00000371425.8;ENST00000371431.7;ENST00000371422.5;ENST00000334356.2	1.213	1.955	1.187	0.197(1887)	0.192(135)	0.232(4036)	non tumor-specific	nAS	yes
VWA5B1_LS009	chr1:20317675|20318590:+	VWA5B1	von Willebrand factor A domain containing 5B1	protein coding gene	no	ENST00000485375.6;ENST00000375079.6;ENST00000289815.12	3.098	0.957	1.097	0.039(375)	0.138(97)	0.1(1730)	non tumor-specific	alt_3prime	yes
UN_MTMR10_LS0012	chr15:30958951|30960881:-	MTMR10	myotubularin related protein 10	protein coding gene	no	.	0.602	0.399	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DTNBP1_LS011	chr6:15627475|15637744:-	DTNBP1	dystrobrevin binding protein 1	protein coding gene	no	ENST00000344537.9;ENST00000510395.5;ENST00000622898.4;ENST00000355917.7;ENST00000515875.5;ENST00000513680.5;ENST00000338950.9;ENST00000506844.1;ENST00000511762.2	49.984	30.260	36.967	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_GPSM3_LS0023	chr6:32192599|32193041:-	GPSM3	G protein signaling modulator 3	protein coding gene	no	.	1.411	0.023	0.000	0.007(63)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRMT10B_LS015	chr9:37768228|37769941:+	TRMT10B	tRNA methyltransferase 10B	protein coding gene	no	ENST00000377753.6;ENST00000488673.6;ENST00000377754.6;ENST00000297994.3	7.771	5.116	11.994	0.946(9066)	0.96(674)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip	yes
ALDH1L1_LS030	chr3:126153581|126154554:-	ALDH1L1	aldehyde dehydrogenase 1 family member L1	protein coding gene	no	ENST00000455064.6;ENST00000273450.7;ENST00000472186.5;ENST00000452905.6;ENST00000393434.6;ENST00000393431.6;ENST00000476245.5;ENST00000473607.5;ENST00000413612.5;ENST00000484724.5;ENST00000493803.5	33.498	66.605	17.433	0.569(5453)	0.829(582)	0.883(15349)	non tumor-specific	exon_skip	yes
UN_AC007099.2_UP_LS0006	chr2:75209277|75276510:+	AC007099.2	-	lncRNA gene	no	.	1.686	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHCHD3P1_UP_LS0009	chr10:8591872|8593540:+	CHCHD3P1	coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1	pseudogene	no	.	4.906	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LMTK3_LS016	chr19:48510592|48511501:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	ENST00000600059.5;ENST00000270238.3;ENST00000650440.1	3.556	3.204	2.094	0.11(1051)	0.132(93)	0.406(7053)	non tumor-specific	exon_skip	yes
GOLGA2P5_LS012	chr12:100161869|100170937:-	GOLGA2P5	GOLGA2 pseudogene 5	pseudogene	no	ENST00000397112.8	0.037	0.012	0.750	0.05(480)	0.053(37)	0.006(111)	non tumor-specific	nAS	yes
UN_RFTN2_LS0025	chr2:197644711|197646483:-	RFTN2	raftlin family member 2	protein coding gene	no	.	2.782	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF226_LS011	chr19:44165613|44165757:+	ZNF226	zinc finger protein 226	protein coding gene	no	ENST00000589160.5;ENST00000588742.5;ENST00000588127.5	0.237	0.255	1.839	0.809(7750)	0.873(613)	0.807(14023)	non tumor-specific	exon_skip;intron_retention	yes
UN_EMSY_LS0027	chr11:76539640|76541830:+	EMSY	EMSY transcriptional repressor, BRCA2 interacting	protein coding gene	yes	.	0.979	0.065	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_PIK3R4_LS0003	chr3:130679571|130680613:-	PIK3R4	phosphoinositide-3-kinase regulatory subunit 4	protein coding gene	no	.	1.054	0.080	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1254P_UP_LS0022	chr7:66886455|66890251:+	RNU6-1254P	RNA, U6 small nuclear 1254, pseudogene	small non-coding RNA gene	no	.	3.683	1.739	0.000	0.243(2329)	0.209(147)	0(0)	non tumor-specific	nAS	no
AL354714.1_LS002	chr1:160933326|160934310:+	AL354714.1	-	lncRNA gene	no	ENST00000356006.3	4.337	0.000	0.662	0.001(11)	0(0)	0.009(151)	non tumor-specific	nAS	yes
UN_BECN1_LS0006	chr17:42810911|42811683:-	BECN1	beclin 1	protein coding gene	yes	.	5.848	0.924	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ANLN_LS0002	chr7:36396419|36399219:+	ANLN	anillin actin binding protein	protein coding gene	no	.	1.479	0.174	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL024498.2_LS0083	chr6:10902762|10907542:+	AL024498.2	-	protein coding gene	no	.	0.917	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DZIP3_LS0026	chr3:108675873|108677483:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	.	4.687	0.132	0.000	0.01(99)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_IL15RA_UP_LS0001	chr10:5978195|5978269:-	IL15RA	interleukin 15 receptor subunit alpha	protein coding gene	no	.	1.200	0.663	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RCC1_LS0003	chr1:28506084|28516725:+	RCC1	regulator of chromosome condensation 1	protein coding gene	no	.	6.206	0.050	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CYP3A7_LS005	chr7:99710892|99713469:-	CYP3A7	cytochrome P450 family 3 subfamily A member 7	protein coding gene	no	ENST00000620220.4;ENST00000477357.5;ENST00000336374.3	6.868	8.950	1.108	0.145(1387)	0.393(276)	0.219(3811)	non tumor-specific	nAS	yes
UN_RNU4-52P_UP_LS0002	chrX:49065845|49071974:+	RNU4-52P	RNA, U4 small nuclear 52, pseudogene	small non-coding RNA gene	no	.	2.114	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC060766.1_UP_LS0006	chr17:35433062|35441563:-	AC060766.1	-	pseudogene	no	.	0.385	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
SPEM3_LS001	chr17:7429040|7429190:+	SPEM3	SPEM family member 3	protein coding gene	no	ENST00000636696.2	1.362	0.000	0.723	0(2)	0(0)	0.009(156)	non tumor-specific	nAS	yes
TSR1_LS004	chr17:2325420|2329343:-	TSR1	TSR1 ribosome maturation factor	protein coding gene	no	ENST00000301364.9	75.534	34.986	33.850	0.996(9544)	0.997(700)	0.979(17009)	non tumor-specific	exon_skip	yes
BRD8_LS043	chr5:138168688|138169222:-	BRD8	bromodomain containing 8	protein coding gene	no	ENST00000441656.5;ENST00000454473.5;ENST00000418329.5;ENST00000230901.9;ENST00000411594.6;ENST00000441656.5;ENST00000454473.5;ENST00000418329.5;ENST00000230901.9;ENST00000411594.6	18.103	11.640	20.182	0.975(9338)	0.99(695)	0.978(17006)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RUBCNL_LS006	chr13:46350351|46356432:-	RUBCNL	rubicon like autophagy enhancer	protein coding gene	no	ENST00000378797.6;ENST00000378781.7;ENST00000429979.5;ENST00000389908.7;ENST00000378784.8;ENST00000441284.5;ENST00000378787.7;ENST00000409879.6;ENST00000631139.2	18.434	5.284	4.019	0.691(6625)	0.65(456)	0.879(15282)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IL12A-AS1_LS0003	chr3:159998105|160038910:-	IL12A-AS1	IL12A antisense RNA 1	lncRNA gene	no	.	2.026	0.341	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
IDH3A_LS025	chr15:78157631|78161581:+	IDH3A	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein coding gene	no	ENST00000558933.5;ENST00000559865.5;ENST00000558509.5;ENST00000559803.5	0.074	0.054	3.270	0.843(8074)	0.897(630)	0.898(15610)	non tumor-specific	exon_skip	yes
TLDC2_LS005	chr20:36879193|36880655:+	TLDC2	TBC/LysM-associated domain containing 2	protein coding gene	no	ENST00000602922.5;ENST00000217320.7	4.611	3.108	0.851	0.235(2250)	0.244(171)	0.184(3197)	non tumor-specific	exon_skip	yes
AL022396.1_LS001	chr6:14004980|14006577:+	AL022396.1	-	lncRNA gene	no	ENST00000427011.1	0.112	0.001	0.849	0.002(23)	0.004(3)	0(6)	non tumor-specific	nAS	yes
UN_NDRG1_LS0094	chr8:133238382|133238646:+	NDRG1	N-myc downstream regulated 1	protein coding gene	yes	.	5.511	0.000	0.000	0.006(61)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGAP27_LS018	chr17:45398047|45401580:-	ARHGAP27	Rho GTPase activating protein 27	protein coding gene	no	ENST00000526484.5	0.193	0.615	0.799	0.488(4677)	0.587(412)	0.264(4589)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IL1R2_LS0013	chr2:102016051|102019660:+	IL1R2	interleukin 1 receptor type 2	protein coding gene	no	.	8.389	4.564	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
STXBP2_LS022	chr19:7644934|7645197:+	STXBP2	syntaxin binding protein 2	protein coding gene	no	ENST00000597068.5	0.081	0.162	1.984	0.13(1241)	0.124(87)	0.57(9902)	non tumor-specific	alt_3prime;exon_skip	yes
PPY_LS008	chr17:43941654|43942421:-	PPY	pancreatic polypeptide	protein coding gene	no	ENST00000591703.5;ENST00000225992.7;ENST00000591703.5;ENST00000225992.7	11.180	3.155	1.971	0.032(303)	0.135(95)	0.054(931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00856_LS0044	chr10:78331964|78334328:+	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	.	2.997	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRLF1_LS0019	chr19:18573748|18574842:+	CRLF1	cytokine receptor like factor 1	protein coding gene	no	.	144.144	21.298	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TTC17_LS015	chr11:43400048|43401446:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	ENST00000299240.10;ENST00000039989.8;ENST00000526774.5;ENST00000525029.1	32.379	20.550	26.108	0.992(9508)	0.997(700)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ANKRD11_LS0126	chr16:89299467|89300242:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	.	4.466	1.144	0.000	0.015(143)	0.014(10)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TDRD9_LS026	chr14:104022330|104024569:+	TDRD9	tudor domain containing 9	protein coding gene	no	ENST00000409874.8;ENST00000557332.5;ENST00000339063.6	7.996	1.837	1.871	0.157(1506)	0.39(274)	0.664(11535)	non tumor-specific	exon_skip	yes
ZNF638_LS061	chr2:71408247|71418602:+	ZNF638	zinc finger protein 638	protein coding gene	no	ENST00000264447.8;ENST00000409544.5;ENST00000487638.5;ENST00000494241.5;ENST00000264447.8;ENST00000409544.5;ENST00000487638.5;ENST00000494241.5	40.348	28.356	28.164	0.971(9306)	0.989(694)	0.977(16976)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SEMA4D_LS0071	chr9:89455953|89475485:-	SEMA4D	semaphorin 4D	protein coding gene	no	.	1.634	0.628	0.000	0.08(769)	0.064(45)	0(0)	non tumor-specific	exon_skip	no
ALDH7A1_LS038	chr5:126584012|126592664:-	ALDH7A1	aldehyde dehydrogenase 7 family member A1	protein coding gene	no	ENST00000637782.1;ENST00000635851.1;ENST00000409134.7;ENST00000636872.1;ENST00000637206.1;ENST00000637272.1;ENST00000636879.1;ENST00000636808.1;ENST00000553117.5;ENST00000458249.6;ENST00000636225.1;ENST00000636062.1;ENST00000637964.1;ENST00000413020.6;ENST00000511266.6;ENST00000412186.2;ENST00000636190.1;ENST00000479989.6	96.742	88.232	43.953	0.984(9430)	0.997(700)	0.962(16715)	non tumor-specific	exon_skip	yes
UN_C1orf159_LS0015	chr1:1084071|1084353:-	C1orf159	chromosome 1 open reading frame 159	protein coding gene	no	.	8.462	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
RAB40B_LS007	chr17:82658562|82659580:-	RAB40B	RAB40B, member RAS oncogene family	protein coding gene	no	ENST00000538809.6	0.165	0.163	1.038	0.62(5936)	0.714(501)	0.52(9039)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
WDR49_LS019	chr3:167566894|167575100:-	WDR49	WD repeat domain 49	protein coding gene	no	ENST00000476376.5	0.004	0.001	0.819	0.005(44)	0.003(2)	0.007(129)	non tumor-specific	nAS	yes
MINK1_LS045	chr17:4896342|4896429:+	MINK1	misshapen like kinase 1	protein coding gene	no	ENST00000355280.10;ENST00000572330.5;ENST00000347992.11;ENST00000574453.5;ENST00000453408.7;ENST00000571207.5;ENST00000574871.1;ENST00000576037.1	148.655	113.439	137.777	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
IGHV3-22_LS001	chr14:106258074|106258178:-	IGHV3-22	immunoglobulin heavy variable 3-22 (pseudogene)	no	no	ENST00000520721.1	0.573	1.688	0.930	0.748(7165)	0.821(576)	0.071(1233)	non tumor-specific	nAS	yes
AC004884.2_LS001	chr7:105304431|105306252:+	AC004884.2	-	lncRNA gene	no	ENST00000476569.1	0.181	0.035	0.897	0.039(376)	0.021(15)	0.018(305)	non tumor-specific	nAS	yes
DGKA_LS054	chr12:55942083|55942174:+	DGKA	diacylglycerol kinase alpha	protein coding gene	no	ENST00000331886.9;ENST00000555218.5;ENST00000553084.5;ENST00000394147.5;ENST00000551156.5;ENST00000402956.7;ENST00000551296.5;ENST00000552478.5;ENST00000549079.6;ENST00000551739.5;ENST00000552903.2	39.336	19.235	44.334	0.976(9355)	0.974(684)	0.979(17009)	non tumor-specific	intron_retention	yes
MTX3_LS002	chr5:79983794|79985571:-	MTX3	metaxin 3	protein coding gene	no	ENST00000512528.2;ENST00000512560.5	1.882	1.370	1.456	0.52(4978)	0.635(446)	0.655(11387)	non tumor-specific	exon_skip	yes
CAMKV_LS003	chr3:49859881|49860171:-	CAMKV	CaM kinase like vesicle associated	protein coding gene	no	ENST00000475665.5;ENST00000296471.11;ENST00000488336.5;ENST00000477224.5;ENST00000620470.4;ENST00000487726.5;ENST00000467248.5;ENST00000466940.5;ENST00000478149.5	2.447	10.986	4.923	0.172(1649)	0.017(12)	0.306(5317)	non tumor-specific	nAS	yes
GRIK1_LS005	chr21:29553704|29555052:-	GRIK1	glutamate ionotropic receptor kainate type subunit 1	protein coding gene	no	ENST00000399907.5;ENST00000399909.5	5.017	0.050	0.922	0.058(558)	0.047(33)	0.139(2409)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GALNT18_LS0006	chr11:11297911|11298793:+	GALNT18	polypeptide N-acetylgalactosaminyltransferase 18	protein coding gene	no	.	4.292	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
XPNPEP1_LS025	chr10:109884148|109886246:-	XPNPEP1	X-prolyl aminopeptidase 1	protein coding gene	no	ENST00000488118.6;ENST00000369683.5;ENST00000502935.5;ENST00000322238.12;ENST00000460523.5;ENST00000403138.6;ENST00000430337.5;ENST00000443078.5;ENST00000508059.5;ENST00000506777.5;ENST00000505255.5	41.139	27.966	41.877	0.98(9390)	0.993(697)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GAS6_LS0128	chr13:113838344|113839084:+	GAS6	growth arrest specific 6	protein coding gene	no	.	5.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCNX2_LS0009	chr1:232999179|232999275:-	PCNX2	pecanex 2	protein coding gene	no	.	6.793	0.232	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
SEC22C_LS026	chr3:42569073|42579477:-	SEC22C	SEC22 homolog C, vesicle trafficking protein	protein coding gene	no	ENST00000456222.1	0.007	0.020	0.789	0.351(3367)	0.477(335)	0.299(5199)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TEAD3_LS0039	chr6:35474323|35474427:+	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	1.007	0.962	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CASP5_UP_LS0080	chr11:105035129|105044413:-	CASP5	caspase 5	protein coding gene	yes	.	39.699	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SOGA1_LS013	chr20:36812844|36815126:-	SOGA1	suppressor of glucose, autophagy associated 1	protein coding gene	no	ENST00000237536.8;ENST00000279034.10;ENST00000465671.1	8.938	5.682	4.234	0.758(7265)	0.832(584)	0.88(15304)	non tumor-specific	exon_skip	yes
MAN2A2_LS027	chr15:90911238|90911367:+	MAN2A2	mannosidase alpha class 2A member 2	protein coding gene	no	ENST00000558171.1	0.033	0.115	0.738	0.182(1741)	0.175(123)	0.257(4472)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AP003472.2_UP_LS0002	chr8:100533311|100565574:-	AP003472.2	-	lncRNA gene	no	.	3.877	1.748	0.000	0.004(38)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_CERS5_LS0016	chr12:50143691|50165026:+	CERS5	ceramide synthase 5	protein coding gene	no	.	3.498	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NFATC2IP_LS0011	chr16:28954721|28955978:+	NFATC2IP	nuclear factor of activated T cells 2 interacting protein	protein coding gene	no	.	9.259	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TEX41_LS009	chr2:144708308|144766370:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000630246.2	0.001	0.000	0.685	0.001(9)	0(0)	0(1)	non tumor-specific	nAS	yes
CLIP3_LS014	chr19:36032513|36032724:-	CLIP3	CAP-Gly domain containing linker protein 3	protein coding gene	no	ENST00000592017.5	11.741	11.344	0.767	0.088(843)	0.057(40)	0.138(2405)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LRRC8A_LS0124	chr9:128913087|128914993:-	LRRC8A	leucine rich repeat containing 8 VRAC subunit A	protein coding gene	no	.	2.526	1.391	0.000	0.005(50)	0.013(9)	0(0)	non tumor-specific	nAS	no
CALM1_LS005	chr14:90397233|90400065:+	CALM1	calmodulin 1	protein coding gene	no	ENST00000356978.8;ENST00000557123.5;ENST00000556757.5;ENST00000553995.5;ENST00000626705.2;ENST00000553630.1	170.775	156.025	377.551	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ABCC12_LS023	chr16:48107425|48108440:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	ENST00000311303.7;ENST00000534418.5;ENST00000529084.5;ENST00000497206.6;ENST00000532494.5;ENST00000529504.5	4.173	0.028	0.721	0.004(38)	0.001(1)	0.007(126)	non tumor-specific	exon_skip;intron_retention	yes
UN_KCTD3_LS0011	chr1:215577728|215577929:+	KCTD3	potassium channel tetramerization domain containing 3	protein coding gene	no	.	3.966	1.088	0.000	0.051(485)	0.047(33)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MAPKAPK2_LS0015	chr1:206731262|206731645:+	MAPKAPK2	MAPK activated protein kinase 2	protein coding gene	no	.	28.367	7.653	0.000	0.018(173)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GTF2IP20_LS0044	chr1:223952442|223952668:-	GTF2IP20	general transcription factor IIi pseudogene 20	pseudogene	no	.	4.293	1.483	0.000	0.053(505)	0.037(26)	0(0)	non tumor-specific	nAS	no
MARCH1_LS023	chr4:164111662|164234833:-	MARCH1	membrane associated ring-CH-type finger 1	protein coding gene	no	ENST00000508725.5	0.873	0.000	0.823	0.01(99)	0.004(3)	0.004(75)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GATD3B_LS0030	chr21:5102097|5102312:+	GATD3B	glutamine amidotransferase like class 1 domain containing 3B	protein coding gene	no	.	1.005	0.089	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UVRAG_LS015	chr11:75980119|75983387:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	ENST00000532130.1	0.022	0.012	0.583	0.323(3099)	0.39(274)	0.02(356)	non tumor-specific	nAS	yes
SYNE2_LS089	chr14:64137983|64139941:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000394768.6	18.588	21.878	18.447	0.765(7325)	0.925(649)	0.955(16593)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RHEBP1_UP_LS0007	chr10:46651974|46669633:-	RHEBP1	RHEB pseudogene 1	pseudogene	no	.	1.891	0.112	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TTYH3_LS0088	chr7:2662696|2662736:-	TTYH3	tweety family member 3	protein coding gene	no	.	9.274	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BAZ2A_LS0084	chr12:56614920|56615014:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	.	4.699	0.500	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
DYRK4_LS012	chr12:4580977|4588937:+	DYRK4	dual specificity tyrosine phosphorylation regulated kinase 4	protein coding gene	no	ENST00000539701.5;ENST00000537719.5	1.468	0.610	0.855	0.042(401)	0.057(40)	0.233(4055)	non tumor-specific	alt_5prime;exon_skip	yes
FRY_LS011	chr13:32102016|32117334:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5;ENST00000436046.1	4.882	2.974	2.738	0.365(3495)	0.623(437)	0.834(14505)	non tumor-specific	nAS	yes
UN_AL390957.1_LS0015	chr1:192380969|192387632:-	AL390957.1	-	lncRNA gene	no	.	2.491	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HSP90AA1_LS0050	chr14:102081386|102081455:+	HSP90AA1	heat shock protein 90 alpha family class A member 1	protein coding gene	no	.	4.090	0.302	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TIMM44_LS0010	chr19:7932071|7932627:-	TIMM44	translocase of inner mitochondrial membrane 44	protein coding gene	no	.	3.786	0.071	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TNRC18_LS0014	chr7:5307572|5307900:+	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	.	2.893	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
OPRL1_LS007	chr20:64080352|64097802:+	OPRL1	opioid related nociceptin receptor 1	protein coding gene	no	.;.	1.539	0.442	0.000	0.046(440)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MACF1_LS123	chr1:39463686|39468615:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000372915.7;ENST00000361689.6;ENST00000372925.6;ENST00000442046.5;ENST00000422234.2;ENST00000462496.5	22.652	16.479	39.863	0.99(9489)	0.987(693)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_AC013436.1_UP_LS0003	chr7:44795968|44796068:-	AC013436.1	-	lncRNA gene	no	.	2.428	0.185	0.000	0.023(218)	0.006(4)	0(0)	non tumor-specific	nAS	no
GSTM1_LS009	chr1:109689325|109690271:+	GSTM1	glutathione S-transferase mu 1	protein coding gene	no	ENST00000309851.9;ENST00000369823.6;ENST00000349334.7;ENST00000476065.6	88.060	130.564	80.425	0.569(5451)	0.577(405)	0.68(11826)	non tumor-specific	nAS	yes
UN_ZNF341-AS1_LS0001	chr20:33794251|33795514:-	ZNF341-AS1	ZNF341 antisense RNA 1	lncRNA gene	no	.	2.429	0.776	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
AARS2_LS012	chr6:44304817|44305054:-	AARS2	alanyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000244571.4	21.125	9.705	11.656	0.972(9311)	0.986(692)	0.975(16939)	non tumor-specific	intron_retention	yes
UN_ARMC5_LS0010	chr16:31465982|31466083:+	ARMC5	armadillo repeat containing 5	protein coding gene	yes	.	5.129	0.704	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_CYB5R3_LS0175	chr22:42619799|42627322:+	CYB5R3	cytochrome b5 reductase 3	protein coding gene	no	.	0.692	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SLC35B3_LS015	chr6:8430157|8435077:-	SLC35B3	solute carrier family 35 member B3	protein coding gene	no	.;.	1.914	0.052	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
COPG1_LS027	chr3:129274136|129274838:+	COPG1	COPI coat complex subunit gamma 1	protein coding gene	no	ENST00000514478.1	0.100	0.185	0.818	0.128(1224)	0.088(62)	0.394(6856)	non tumor-specific	exon_skip	yes
UN_SERPINA12_UP_LS0003	chr14:94556757|94557070:-	SERPINA12	serpin family A member 12	protein coding gene	no	.	1.250	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPIA_LS0023	chr7:44801413|44801450:-	PPIA	peptidylprolyl isomerase A	protein coding gene	no	.	65.239	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AF117829.1_LS005	chr8:89615305|89628155:-	AF117829.1	-	lncRNA gene	no	ENST00000519655.6	0.194	0.005	0.685	0.009(87)	0.004(3)	0.074(1278)	non tumor-specific	nAS	yes
NDRG3_LS006	chr20:36656411|36656497:-	NDRG3	NDRG family member 3	protein coding gene	no	ENST00000373803.6;ENST00000359675.6;ENST00000349004.5;ENST00000373773.7	48.669	30.630	32.346	0.994(9528)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
GLRX5_LS002	chr14:95535384|95542973:+	GLRX5	glutaredoxin 5	protein coding gene	no	ENST00000557731.1	2.952	4.376	0.650	0.048(462)	0.034(24)	0.036(633)	non tumor-specific	alt_3prime;exon_skip	yes
LINC02129_LS003	chr16:27171979|27176563:-	LINC02129	long intergenic non-protein coding RNA 2129	lncRNA gene	no	ENST00000564381.2	1.440	0.000	0.689	0.005(46)	0(0)	0.034(593)	non tumor-specific	nAS	yes
SLC34A1_LS010	chr5:177388189|177388277:+	SLC34A1	solute carrier family 34 member 1	protein coding gene	no	ENST00000512593.5;ENST00000324417.5	3.008	263.625	0.958	0.027(256)	0.148(104)	0.031(532)	non tumor-specific	exon_skip;intron_retention	yes
PI4KAP1_LS003	chr22:18535948|18536650:-	PI4KAP1	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudogene	no	ENST00000619742.4;ENST00000617243.4;ENST00000618794.4;ENST00000612579.4	18.574	7.534	11.497	0.973(9325)	0.964(677)	0.972(16892)	non tumor-specific	nAS	yes
IPO5_LS034	chr13:98008142|98009881:+	IPO5	importin 5	protein coding gene	no	ENST00000261574.9;ENST00000357602.7;ENST00000490680.5;ENST00000469360.5;ENST00000491555.5	134.535	86.167	84.168	0.984(9424)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
UN_RPSAP68_UP_LS0470	chr21:8400865|8443904:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	313.742	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
LSP1_LS008	chr11:1868986|1880087:+	LSP1	lymphocyte specific protein 1	protein coding gene	no	ENST00000405957.6	4.781	12.641	12.347	0.644(6174)	0.829(582)	0.742(12894)	non tumor-specific	exon_skip	yes
UN_PRKAB2_LS0008	chr1:147162573|147171989:-	PRKAB2	protein kinase AMP-activated non-catalytic subunit beta 2	protein coding gene	no	.	0.860	0.160	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZMYM3_LS009	chrX:71244470|71244790:-	ZMYM3	zinc finger MYM-type containing 3	protein coding gene	no	ENST00000314425.9;ENST00000373998.5;ENST00000489332.1;ENST00000373984.7;ENST00000373988.5	33.689	18.071	16.818	0.977(9357)	0.983(690)	0.974(16927)	non tumor-specific	intron_retention	yes
UN_HLA-DPA1_LS0069	chr6:33069067|33069090:+	HLA-DPA1	major histocompatibility complex, class II, DP alpha 1	protein coding gene	no	.	12.800	2.969	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CLOCK_LS0003	chr4:55434781|55435430:-	CLOCK	clock circadian regulator	protein coding gene	no	.	0.895	0.075	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_KHSRP_LS0103	chr19:6415140|6415213:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	.	4.107	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_PLSCR5_UP_LS0001	chr3:146683448|146684522:-	PLSCR5	phospholipid scramblase family member 5	protein coding gene	no	.	3.749	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC087203.3_UP_LS0011	chr8:12388334|12410965:+	AC087203.3	-	lncRNA gene	no	.	2.499	0.803	0.000	0.053(509)	0.083(58)	0(0)	non tumor-specific	nAS	no
UN_PLK5_LS0001	chr19:1529872|1531738:+	PLK5	polo like kinase 5 (inactive)	protein coding gene	yes	.	3.007	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_IPP_LS0059	chr1:45746461|45748827:-	IPP	intracisternal A particle-promoted polypeptide	protein coding gene	no	.	0.439	0.157	0.000	0.006(58)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC009950.1_LS012	chr2:230172515|230173688:+	AC009950.1	-	lncRNA gene	no	ENST00000630748.2;ENST00000595586.2;ENST00000594622.1	0.184	0.039	0.722	0.048(460)	0.037(26)	0.022(382)	non tumor-specific	nAS	yes
UN_AHNAK_LS0549	chr11:62521462|62529881:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	4.530	1.524	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	nAS	no
BMP15_LS001	chrX:50911111|50915757:+	BMP15	bone morphogenetic protein 15	protein coding gene	no	ENST00000252677.3	0.022	0.004	0.673	0.005(46)	0.006(4)	0.001(14)	non tumor-specific	nAS	yes
WDR43_LS007	chr2:28912710|28914069:+	WDR43	WD repeat domain 43	protein coding gene	no	ENST00000407426.7;ENST00000440983.1;ENST00000296126.6	37.855	16.402	16.491	0.974(9331)	0.99(695)	0.975(16943)	non tumor-specific	alt_3prime;exon_skip	yes
GLRB_LS003	chr4:157078146|157084664:+	GLRB	glycine receptor beta	protein coding gene	no	ENST00000515642.5;ENST00000506411.5	0.737	0.258	0.889	0.104(993)	0.114(80)	0.248(4315)	non tumor-specific	exon_skip	yes
UN_OLA1_LS0007	chr2:174082001|174123180:-	OLA1	Obg like ATPase 1	protein coding gene	no	.	4.089	0.182	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MYCBP2_LS021	chr13:77081993|77083032:-	MYCBP2	MYC binding protein 2	protein coding gene	no	ENST00000544440.6;ENST00000357337.10;ENST00000429715.1	25.750	23.485	31.123	0.919(8807)	0.981(689)	0.975(16954)	non tumor-specific	nAS	yes
NSD1_LS014	chr5:177229886|177235821:+	NSD1	nuclear receptor binding SET domain protein 1	protein coding gene	yes	ENST00000375350.3	0.079	0.099	0.680	0.09(867)	0.127(89)	0.171(2969)	non tumor-specific	exon_skip	yes
MIS18BP1_LS018	chr14:45235944|45237648:-	MIS18BP1	MIS18 binding protein 1	protein coding gene	no	ENST00000310806.8;ENST00000454990.5;ENST00000627697.1	19.309	6.350	5.034	0.874(8376)	0.915(642)	0.903(15699)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF180_LS018	chr19:44497377|44500275:-	ZNF180	zinc finger protein 180	protein coding gene	no	ENST00000592095.5;ENST00000592529.5;ENST00000586637.5	1.545	1.269	1.600	0.717(6871)	0.842(591)	0.718(12488)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ABCB1_LS028	chr7:87570223|87585512:-	ABCB1	ATP binding cassette subfamily B member 1	protein coding gene	no	ENST00000622132.4;ENST00000265724.7;ENST00000543898.5	7.767	17.934	2.612	0.477(4568)	0.832(584)	0.742(12900)	non tumor-specific	nAS	yes
OIP5-AS1_LS005	chr15:41286100|41287983:+	OIP5-AS1	OIP5 antisense RNA 1	lncRNA gene	no	ENST00000557993.5	0.098	0.101	0.939	0.771(7388)	0.833(585)	0.446(7748)	non tumor-specific	nAS	yes
UN_OPRL1_LS0007	chr20:64080382|64092688:+	OPRL1	opioid related nociceptin receptor 1	protein coding gene	no	.	1.545	0.102	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_DLGAP5_LS0004	chr14:55162615|55162971:-	DLGAP5	DLG associated protein 5	protein coding gene	no	.	3.642	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PCBP1-AS1_LS056	chr2:70018131|70055714:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000627181.2	0.003	0.000	0.659	0.007(69)	0.011(8)	0.02(340)	non tumor-specific	nAS	yes
UN_MTCO3P12_LS0037	chr1:634690|634721:-	MTCO3P12	MT-CO3 pseudogene 12	pseudogene	no	.	23.950	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP2CB_LS0012	chr8:30794281|30799546:-	PPP2CB	protein phosphatase 2 catalytic subunit beta	protein coding gene	yes	.	24.778	4.262	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_LINC02109_LS0019	chr5:29205492|29208860:+	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	.	2.811	0.230	0.000	0.022(209)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TTC28_LS0014	chr22:27990151|27993124:+	TTC28	tetratricopeptide repeat domain 28	protein coding gene	no	.	2.606	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093001.1_UP_LS0006	chr3:149224316|149224997:+	AC093001.1	-	lncRNA gene	no	.	3.950	2.224	0.000	0.047(454)	0.081(57)	0(0)	non tumor-specific	nAS	no
LINC01515_LS008	chr10:65579948|65585485:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000620859.4	0.392	0.028	0.600	0.005(52)	0.004(3)	0.007(116)	non tumor-specific	nAS	yes
UN_AL691432.2_UP_LS0060	chr1:1640306|1707409:-	AL691432.2	-	lncRNA gene	no	.	8.381	2.090	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL592429.2_LS002	chr6:139271858|139283104:+	AL592429.2	-	lncRNA gene	no	ENST00000441249.1;ENST00000650173.1	2.240	0.696	0.866	0.037(354)	0.05(35)	0.221(3847)	non tumor-specific	nAS	yes
UN_GOSR1_LS0009	chr17:30480947|30481143:+	GOSR1	golgi SNAP receptor complex member 1	protein coding gene	no	.	1.171	0.044	0.000	0.02(187)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_ZNF581_LS0066	chr19:55644026|55644553:+	ZNF581	zinc finger protein 581	protein coding gene	no	.	3.897	0.132	0.000	0.03(288)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TOMM34_LS0037	chr20:44955620|44958337:+	TOMM34	translocase of outer mitochondrial membrane 34	protein coding gene	no	.	3.223	0.382	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PHKG1_LS0003	chr7:56080377|56080513:-	PHKG1	phosphorylase kinase catalytic subunit gamma 1	protein coding gene	no	.	22.859	1.682	0.000	0.016(149)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MYO18A_LS0054	chr17:29092517|29092855:-	MYO18A	myosin XVIIIA	protein coding gene	no	.	12.122	0.372	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PRAC1_LS001	chr17:48721899|48722318:-	PRAC1	PRAC1 small nuclear protein	protein coding gene	no	ENST00000290294.4	36.486	25.255	2.042	0.163(1557)	0.177(124)	0.087(1512)	non tumor-specific	nAS	yes
UN_AC007383.3_UP_LS0011	chr2:206100666|206102209:+	AC007383.3	-	lncRNA gene	no	.	1.832	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
FAM197Y3_LS003	chrY:9503109|9504608:-	FAM197Y3	family with sequence similarity 197 Y-linked member 3	pseudogene	no	ENST00000414596.5	0.788	0.082	0.000	0.004(41)	0.009(6)	0(0)	non tumor-specific	nAS	yes
FOS_LS002	chr14:75279123|75279906:+	FOS	Fos proto-oncogene, AP-1 transcription factor subunit	protein coding gene	yes	ENST00000554212.5	9.805	14.098	5.815	0.853(8176)	0.922(647)	0.877(15246)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RFC5_LS0013	chr12:118027018|118027962:+	RFC5	replication factor C subunit 5	protein coding gene	no	.	3.807	0.203	0.000	0.012(111)	0.007(5)	0(0)	non tumor-specific	alt_3prime;mutex_exons	no
POGLUT1_LS018	chr3:119486932|119488929:+	POGLUT1	protein O-glucosyltransferase 1	protein coding gene	no	ENST00000295588.8;ENST00000486607.5;ENST00000647766.1;ENST00000295588.8;ENST00000486607.5;ENST00000647766.1;ENST00000295588.8;ENST00000486607.5;ENST00000647766.1	19.699	11.657	9.358	0.977(9362)	0.983(690)	0.97(16854)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL161421.1_LS001	chr13:48975980|48976781:-	AL161421.1	-	lncRNA gene	no	ENST00000619666.1	0.107	0.087	0.626	0.069(662)	0.111(78)	0.013(223)	non tumor-specific	nAS	yes
HUWE1_LS062	chrX:53594621|53595187:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12	32.191	22.366	15.999	0.828(7932)	0.936(657)	0.965(16782)	non tumor-specific	exon_skip	yes
UN_PPP2R2C_LS0007	chr4:6329353|6333607:-	PPP2R2C	protein phosphatase 2 regulatory subunit Bgamma	protein coding gene	yes	.	0.889	0.138	0.000	0.007(71)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
COL28A1_LS009	chr7:7380862|7381544:-	COL28A1	collagen type XXVIII alpha 1 chain	protein coding gene	no	ENST00000399429.7	3.440	1.923	3.921	0.193(1853)	0.349(245)	0.815(14162)	non tumor-specific	alt_3prime	yes
AC006305.1_LS001	chr18:56003904|56025341:-	AC006305.1	-	lncRNA gene	no	ENST00000382897.2;ENST00000650203.1	2.769	0.486	2.254	0.003(33)	0.019(13)	0.074(1285)	non tumor-specific	nAS	yes
WISP3_LS007	chr6:112064786|112068205:+	WISP3	cellular communication network factor 6	protein coding gene	yes	.;.	4.106	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_UCP2_LS0085	chr11:73978477|73980015:-	UCP2	uncoupling protein 2	protein coding gene	no	.	1.875	0.129	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
AL138686.1_LS001	chr13:46474334|46492883:+	AL138686.1	-	lncRNA gene	no	ENST00000612699.1	0.719	0.000	0.677	0.001(9)	0(0)	0.001(13)	non tumor-specific	nAS	yes
GALNT14_LS026	chr2:30993007|31129277:-	GALNT14	polypeptide N-acetylgalactosaminyltransferase 14	protein coding gene	no	ENST00000490212.5	0.017	0.002	0.717	0.394(3775)	0.368(258)	0.007(121)	non tumor-specific	exon_skip	yes
EIPR1_LS019	chr2:3262137|3318857:-	EIPR1	EARP complex and GARP complex interacting protein 1	protein coding gene	no	ENST00000478754.5	17.303	0.000	0.574	0(3)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_ZNF761_LS0024	chr19:53433750|53446227:+	ZNF761	zinc finger protein 761	protein coding gene	no	.	1.897	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
LRIG1_LS004	chr3:66382398|66382982:-	LRIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	yes	ENST00000273261.7;ENST00000383703.3;ENST00000496559.6;ENST00000495037.1	89.224	64.189	60.624	0.95(9100)	0.994(698)	0.975(16951)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IFT46_LS0037	chr11:118565705|118566202:+	IFT46	intraflagellar transport 46	protein coding gene	no	.	0.991	0.168	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
NXNL2_LS011	chr9:88538392|88539714:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	ENST00000618633.1	1.469	0.000	0.607	0.003(25)	0(0)	0(3)	non tumor-specific	nAS	yes
CHEK1_LS020	chr11:125635533|125637449:+	CHEK1	checkpoint kinase 1	protein coding gene	yes	ENST00000532449.5;ENST00000438015.5;ENST00000427383.6;ENST00000428830.6;ENST00000544373.5;ENST00000532669.5;ENST00000534070.5;ENST00000524737.5;ENST00000278916.7	18.513	2.690	2.061	0.899(8616)	0.728(511)	0.76(13208)	non tumor-specific	exon_skip	yes
UN_PTMA_LS0059	chr2:231711987|231712448:+	PTMA	prothymosin alpha	protein coding gene	yes	.	886.157	136.614	0.000	0.007(71)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
DNAH11_LS043	chr7:21702802|21704434:+	DNAH11	dynein axonemal heavy chain 11	protein coding gene	no	ENST00000620169.4;ENST00000328843.10;ENST00000409508.7	3.816	0.898	1.109	0.071(683)	0.066(46)	0.266(4631)	non tumor-specific	nAS	yes
AGT_LS007	chr1:230706200|230709995:-	AGT	alanine--glyoxylate and serine--pyruvate aminotransferase	protein coding gene	no	ENST00000366667.4;ENST00000366667.4;ENST00000366667.4	233.982	219.395	24.617	0.821(7864)	0.949(666)	0.918(15948)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC008429.2_UP_LS0003	chr5:172969590|172973856:+	AC008429.2	-	pseudogene	no	.	1.182	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
METTL23_LS007	chr17:76726879|76732978:+	METTL23	methyltransferase like 23	protein coding gene	no	ENST00000591571.5;ENST00000591571.5	0.140	0.061	1.752	0.861(8250)	0.902(633)	0.806(14015)	non tumor-specific	alt_5prime;exon_skip	yes
PDCD11_LS005	chr10:103398528|103400397:+	PDCD11	programmed cell death 11	protein coding gene	no	ENST00000649849.1;ENST00000369797.7	14.911	6.786	5.679	0.892(8544)	0.946(664)	0.933(16216)	non tumor-specific	exon_skip	yes
IDH3G_LS001	chrX:153785973|153786212:-	IDH3G	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma	protein coding gene	no	ENST00000217901.9	121.914	58.202	135.607	0.99(9489)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IDH1_LS0026	chr2:208253959|208254787:-	IDH1	isocitrate dehydrogenase (NADP(+)) 1	protein coding gene	yes	.	11.249	1.565	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
HEATR1_LS017	chr1:236569124|236571351:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	ENST00000366582.7;ENST00000366581.6	19.787	7.053	9.761	0.949(9093)	0.959(673)	0.962(16713)	non tumor-specific	alt_3prime;exon_skip	yes
CAMK4_LS001	chr5:111223706|111224407:+	CAMK4	calcium/calmodulin dependent protein kinase IV	protein coding gene	no	ENST00000508074.5	0.122	0.101	1.016	0.015(144)	0.009(6)	0.046(803)	non tumor-specific	nAS	yes
UN_C6orf223_LS0008	chr6:44001116|44001637:-	C6orf223	chromosome 6 open reading frame 223	protein coding gene	no	.	1.054	0.066	0.000	0.02(196)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC026464.1_LS0010	chr16:69340087|69340194:+	AC026464.1	-	protein coding gene	no	.	7.892	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_ATP8B3_LS0003	chr19:1789700|1789890:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	.	1.114	0.000	0.000	0.006(59)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PRR5L_LS0028	chr11:36394368|36396114:+	PRR5L	proline rich 5 like	protein coding gene	no	.	1.424	0.782	0.000	0.01(100)	0.058(41)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CHMP7_LS008	chr8:23248197|23255247:+	CHMP7	charged multivesicular body protein 7	protein coding gene	no	ENST00000519984.1	0.029	0.000	0.630	0.017(165)	0.009(6)	0.014(250)	non tumor-specific	exon_skip	yes
UN_FAM219B_UP_LS0003	chr15:74918943|74920271:-	FAM219B	family with sequence similarity 219 member B	protein coding gene	no	.	0.908	0.452	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
EYA1_LS024	chr8:71356511|71361647:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000644427.1;ENST00000340726.7;ENST00000465115.6;ENST00000303824.11;ENST00000388741.7;ENST00000645451.1	2.097	0.264	1.205	0.201(1928)	0.148(104)	0.234(4067)	non tumor-specific	nAS	yes
UN_AL133477.1_UP_LS0001	chr9:96383914|96398763:+	AL133477.1	-	pseudogene	no	.	1.499	0.162	0.000	0.03(286)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_TP73-AS1_LS0114	chr1:3739871|3739908:-	TP73-AS1	TP73 antisense RNA 1	pseudogene	no	.	3.971	1.677	0.000	0.03(289)	0.033(23)	0(0)	non tumor-specific	nAS	no
DHX30_LS034	chr3:47849554|47849630:+	DHX30	DExH-box helicase 30	protein coding gene	no	ENST00000445061.5;ENST00000395745.6;ENST00000348968.8;ENST00000446256.6;ENST00000619982.4;ENST00000457607.1	164.433	78.138	100.583	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
FAM205C_LS006	chr9:34895084|34895579:-	FAM205C	family with sequence similarity 205 member C	protein coding gene	no	ENST00000340783.10;ENST00000603640.6;ENST00000603592.1	0.154	0.000	0.730	0.001(10)	0.003(2)	0.012(213)	non tumor-specific	nAS	yes
UN_PBX1_LS0011	chr1:164563311|164625929:+	PBX1	PBX homeobox 1	protein coding gene	yes	.	1.552	0.497	0.000	0.05(480)	0.063(44)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
EVPL_LS024	chr17:76022227|76022413:-	EVPL	envoplakin	protein coding gene	no	ENST00000301607.7;ENST00000586740.1;ENST00000587569.5	18.021	11.704	4.207	0.7(6705)	0.816(573)	0.497(8639)	non tumor-specific	alt_5prime	yes
UN_HOXC4_LS0026	chr12:54053276|54053423:+	HOXC4	homeobox C4	protein coding gene	no	.	1.686	0.240	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SMARCAD1_LS0001	chr4:94207735|94207841:+	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein coding gene	no	.	0.293	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL450345.1_UP_LS0030	chr6:164237857|164336968:+	AL450345.1	-	lncRNA gene	no	.	2.424	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOXB3_LS0138	chr17:48603968|48604480:-	HOXB3	homeobox B3	protein coding gene	no	.	3.584	1.680	0.000	0.071(683)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_ASXL2_LS0013	chr2:25771540|25786895:-	ASXL2	ASXL transcriptional regulator 2	protein coding gene	no	.	4.080	0.193	0.000	0.007(69)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
SPIN1_LS025	chr9:88416766|88418850:+	SPIN1	sphingolipid transporter 1 (putative)	protein coding gene	no	.;.	1.527	0.773	0.000	0.037(353)	0.084(59)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_COX5B_LS0010	chr2:97646406|97646517:+	COX5B	cytochrome c oxidase subunit 5B	protein coding gene	no	.	4.843	0.230	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TEP1_LS024	chr14:20377358|20377425:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000471684.2	0.356	0.524	0.808	0.533(5111)	0.519(364)	0.42(7293)	non tumor-specific	exon_skip;intron_retention	yes
MIDN_LS004	chr19:1251901|1253954:+	MIDN	midnolin	protein coding gene	no	ENST00000586843.2	5.673	4.731	14.771	0.963(9230)	0.969(680)	0.974(16937)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPOCK2_LS0114	chr10:72062791|72062825:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	.	71.686	5.895	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL807752.6_LS0013	chr9:137039645|137039731:-	AL807752.6	-	protein coding gene	no	.	18.867	4.234	0.000	0.016(157)	0.019(13)	0(0)	non tumor-specific	intron_retention	no
CCDC114_LS018	chr19:48318576|48318713:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	ENST00000315396.7;ENST00000474199.5;ENST00000497803.1	2.064	0.976	1.199	0.204(1956)	0.208(146)	0.482(8378)	non tumor-specific	exon_skip	yes
CFLAR_LS025	chr2:201142762|201145378:+	CFLAR	CASP8 and FADD like apoptosis regulator	protein coding gene	yes	ENST00000439154.6	0.047	0.052	1.702	0.192(1842)	0.285(200)	0.728(12649)	non tumor-specific	exon_skip	yes
UN_LINC01541_LS0016	chr18:71548696|71578826:-	LINC01541	long intergenic non-protein coding RNA 1541	lncRNA gene	no	.	3.182	0.620	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS1121	chr11:62527603|62529803:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.446	0.839	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	nAS	no
THBS3_LS030	chr1:155202401|155202812:-	THBS3	thrombospondin 3	protein coding gene	no	ENST00000368378.7;ENST00000541576.5;ENST00000457183.6;ENST00000541990.5;ENST00000428962.2;ENST00000486260.5;ENST00000460050.1	19.139	9.280	22.569	0.951(9114)	0.98(688)	0.975(16955)	non tumor-specific	alt_3prime;intron_retention	yes
POLG_LS057	chr15:89332374|89333096:-	POLG	DNA polymerase gamma, catalytic subunit	protein coding gene	no	ENST00000631044.2	1.465	0.823	2.349	0.416(3982)	0.442(310)	0.846(14697)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GS1-279B7.1_LS006	chr1:185334387|185334961:-	GS1-279B7.1	-	pseudogene	no	ENST00000563533.5;ENST00000565520.1	0.309	0.000	0.690	0(2)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_CROCC_LS0156	chr1:16969340|16969809:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	5.173	1.380	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ZNF24_LS007	chr18:35340733|35344360:-	ZNF24	zinc finger protein 24	protein coding gene	no	ENST00000261332.10	2.338	2.814	2.661	0.885(8478)	0.969(680)	0.888(15442)	non tumor-specific	alt_5prime	yes
FAM210A_LS005	chr18:13670968|13671862:-	FAM210A	family with sequence similarity 210 member A	protein coding gene	no	ENST00000589346.1	0.313	0.153	1.247	0.581(5563)	0.566(397)	0.613(10649)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MMP14_LS0207	chr14:22846802|22846900:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	2.613	0.121	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF451_LS017	chr6:57133192|57134744:+	ZNF451	zinc finger protein 451	protein coding gene	no	ENST00000370706.8;ENST00000357489.7;ENST00000444273.6;ENST00000491832.6;ENST00000502749.1	7.527	6.102	7.960	0.875(8388)	0.959(673)	0.954(16590)	non tumor-specific	exon_skip	yes
TBC1D7_LS009	chr6:13306527|13307600:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	ENST00000606214.5;ENST00000356436.8;ENST00000379300.7;ENST00000343141.8;ENST00000379307.6;ENST00000452989.5;ENST00000450347.5;ENST00000422136.5;ENST00000446018.5	65.318	20.659	22.576	0.996(9545)	0.996(699)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC024255.1_UP_LS0017	chr12:28810684|28813655:+	AC024255.1	-	pseudogene	no	.	2.978	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS090	chr4:122339408|122343410:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000438707.5;ENST00000306802.8;ENST00000442707.1	21.195	20.978	39.763	0.965(9241)	0.989(694)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TMC6_LS0104	chr17:78131129|78131575:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	.	1.643	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_PLVAP_LS0057	chr19:17365433|17365556:+	PLVAP	plasmalemma vesicle associated protein	protein coding gene	no	.	10.408	0.560	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
TDRD12_LS035	chr19:32826598|32827164:+	TDRD12	tudor domain containing 12	protein coding gene	no	ENST00000637289.1	3.990	0.000	0.807	0.001(6)	0(0)	0.015(257)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NDST3_LS0003	chr4:118133609|118204160:-	NDST3	N-deacetylase and N-sulfotransferase 3	protein coding gene	no	.	2.030	0.126	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACNA1G_LS004	chr17:50569803|50571878:+	CACNA1G	calcium voltage-gated channel subunit alpha1 G	protein coding gene	no	ENST00000360761.8;ENST00000354983.8;ENST00000352832.9;ENST00000442258.6;ENST00000416767.8;ENST00000502264.5;ENST00000512389.5;ENST00000513964.5;ENST00000514717.5;ENST00000510366.5;ENST00000503485.5;ENST00000507510.6;ENST00000511765.5;ENST00000507336.5;ENST00000506406.5;ENST00000504076.5;ENST00000513689.6;ENST00000507609.5;ENST00000503436.5;ENST00000510115.5;ENST00000515165.5;ENST00000514181.5;ENST00000515765.5;ENST00000514079.5;ENST00000507896.5;ENST00000511768.5;ENST00000505165.5;ENST00000503607.5;ENST00000515411.5;ENST00000429973.6;ENST00000359106.9;ENST00000358244.9;ENST00000570567.1	3.381	1.043	1.471	0.078(752)	0.043(30)	0.412(7167)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BMI1_LS0017	chr10:22329351|22329434:+	BMI1	BMI1 proto-oncogene, polycomb ring finger	protein coding gene	yes	.	2.791	0.570	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
TBC1D9B_LS029	chr5:179879789|179888103:-	TBC1D9B	TBC1 domain family member 9B	protein coding gene	no	ENST00000355235.7;ENST00000356834.7	86.068	64.799	59.764	0.982(9412)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
BTBD7_LS001	chr14:93243088|93245825:-	BTBD7	BTB domain containing 7	protein coding gene	no	ENST00000355125.3;ENST00000334746.9;ENST00000554565.5;ENST00000553975.1	12.561	10.359	8.432	0.946(9064)	0.957(672)	0.965(16774)	non tumor-specific	alt_3prime	yes
CNBP_LS013	chr3:129171538|129171655:-	CNBP	CCHC-type zinc finger nucleic acid binding protein	protein coding gene	no	ENST00000502976.5;ENST00000446936.6	202.913	141.873	223.131	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MYO9A_LS053	chr15:72010447|72019039:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000356056.9;ENST00000564571.5;ENST00000444904.5;ENST00000567560.5;ENST00000424560.2;ENST00000568438.1	4.157	3.270	2.425	0.577(5532)	0.786(552)	0.83(14431)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZC3H3_UP_LS0008	chr8:143541970|143542267:-	ZC3H3	zinc finger CCCH-type containing 3	protein coding gene	no	.	1.527	0.387	0.000	0.029(277)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_RASSF1_LS0024	chr3:50337448|50337905:-	RASSF1	Ras association domain family member 1	protein coding gene	yes	.	3.413	1.375	0.000	0.053(508)	0.043(30)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
EFR3B_LS008	chr2:25128332|25129975:+	EFR3B	EFR3 homolog B	protein coding gene	no	ENST00000401432.7;ENST00000403714.7;ENST00000402191.5;ENST00000405108.5;ENST00000264719.5	5.569	4.858	1.912	0.307(2941)	0.332(233)	0.592(10286)	non tumor-specific	nAS	yes
SINHCAF_LS011	chr12:31298224|31323944:-	SINHCAF	SIN3-HDAC complex associated factor	protein coding gene	no	ENST00000454658.6	5.935	7.520	3.263	0.875(8382)	0.915(642)	0.78(13558)	non tumor-specific	alt_5prime;exon_skip	yes
BANP_LS011	chr16:87970170|87975048:+	BANP	BTG3 associated nuclear protein	protein coding gene	yes	ENST00000393207.5	0.022	0.013	0.616	0.004(36)	0.006(4)	0.007(130)	non tumor-specific	nAS	yes
UN_DOCK1_LS0002	chr10:126905552|126970702:+	DOCK1	dedicator of cytokinesis 1	protein coding gene	no	.	1.602	0.771	0.000	0.012(117)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_KIF7_LS0052	chr15:89652954|89654910:-	KIF7	kinesin family member 7	protein coding gene	yes	.	1.005	0.155	0.000	0.013(125)	0.009(6)	0(0)	non tumor-specific	nAS	no
TCL6_LS007	chr14:95662664|95663256:+	TCL6	T cell leukemia/lymphoma 6	lncRNA gene	yes	ENST00000357168.6	1.276	0.295	0.677	0.012(119)	0.063(44)	0.022(389)	non tumor-specific	nAS	yes
UN_TUT7_LS0009	chr9:86299257|86301276:-	TUT7	terminal uridylyl transferase 7	protein coding gene	no	.	2.383	0.286	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AC091885.2_UP_LS0007	chr5:23977922|24320619:+	AC091885.2	-	lncRNA gene	no	.	2.483	0.000	0.000	0.007(70)	0(0)	0(0)	non tumor-specific	nAS	no
HSPD1_LS011	chr2:197490296|197493324:-	HSPD1	heat shock protein family D (Hsp60) member 1	protein coding gene	yes	ENST00000388968.7;ENST00000345042.6;ENST00000388968.7;ENST00000345042.6	817.529	466.942	228.228	0.998(9566)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SERPINH1_LS001	chr11:75562319|75563727:+	SERPINH1	serpin family H member 1	protein coding gene	no	ENST00000533603.5;ENST00000649490.1;ENST00000530284.5	0.242	0.355	5.487	0.399(3825)	0.671(471)	0.855(14867)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AGK_UP_LS0008	chr7:141522033|141551152:+	AGK	acylglycerol kinase	protein coding gene	no	.	0.727	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01362_LS0024	chr1:83080706|83102902:-	LINC01362	long intergenic non-protein coding RNA 1362	lncRNA gene	no	.	0.967	0.356	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PROZ_LS0031	chr13:113166426|113167165:+	PROZ	protein Z, vitamin K dependent plasma glycoprotein	protein coding gene	no	.	0.612	0.979	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ZNF100_LS004	chr19:21744115|21744941:-	ZNF100	zinc finger protein 100	protein coding gene	no	ENST00000358296.10;ENST00000598026.1	3.357	1.694	1.294	0.741(7099)	0.815(572)	0.672(11675)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
XAGE2_LS001	chrX:52369214|52370007:+	XAGE2	X antigen family member 2	protein coding gene	no	ENST00000286049.2	6.018	1.154	1.239	0.119(1139)	0.226(159)	0.11(1920)	non tumor-specific	nAS	yes
MIR9-3HG_LS010	chr15:89382597|89386789:+	MIR9-3HG	MIR9-3 host gene	lncRNA gene	no	ENST00000561037.5	0.288	0.028	0.674	0.027(257)	0.004(3)	0.001(10)	non tumor-specific	nAS	yes
MRPL34_LS006	chr19:17305933|17306242:+	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	ENST00000602206.1	8.208	5.551	0.960	0.804(7700)	0.783(550)	0.553(9613)	non tumor-specific	alt_3prime	yes
CTBP2_LS002	chr10:124992812|124993202:-	CTBP2	C-terminal binding protein 2	protein coding gene	yes	ENST00000337195.9;ENST00000309035.10;ENST00000334808.10;ENST00000531469.5;ENST00000494626.6;ENST00000411419.6	125.112	75.555	71.244	0.992(9504)	0.996(699)	0.976(16963)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF567_LS0009	chr19:36689497|36692392:+	ZNF567	zinc finger protein 567	protein coding gene	no	.	2.440	0.247	0.000	0.009(90)	0.004(3)	0(0)	non tumor-specific	nAS	no
PDGFC_LS011	chr4:156772893|156810837:-	PDGFC	platelet derived growth factor C	protein coding gene	no	ENST00000502773.5;ENST00000274071.6;ENST00000422544.2;ENST00000511985.1	28.319	22.120	11.579	0.93(8909)	0.989(694)	0.944(16407)	non tumor-specific	exon_skip;mutex_exons	yes
SP8_LS001	chr7:20785795|20785948:-	SP8	Sp8 transcription factor	protein coding gene	no	ENST00000361443.4	1.466	0.193	0.830	0.084(805)	0.057(40)	0.034(585)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_PLXNB2_LS0200	chr22:50284336|50284573:-	PLXNB2	plexin B2	protein coding gene	no	.	18.187	2.337	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
AC105393.1_LS002	chr2:421264|421838:+	AC105393.1	-	lncRNA gene	no	ENST00000449621.1	0.023	0.000	0.656	0.001(12)	0(0)	0(6)	non tumor-specific	nAS	yes
ZNF692_LS044	chr1:248858321|248859015:-	ZNF692	zinc finger protein 692	protein coding gene	no	ENST00000366471.7;ENST00000528141.5;ENST00000534660.5;ENST00000534456.1	0.036	0.037	0.972	0.317(3039)	0.184(129)	0.537(9334)	non tumor-specific	alt_5prime	yes
VKORC1_LS009	chr16:31093482|31094557:-	VKORC1	vitamin K epoxide reductase complex subunit 1	protein coding gene	no	ENST00000300851.10	0.364	1.512	1.737	0.85(8144)	0.859(603)	0.784(13634)	non tumor-specific	nAS	yes
DENND4C_LS047	chr9:19369987|19372037:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000380427.5;ENST00000380427.5;ENST00000380427.5	0.814	0.484	2.470	0.688(6595)	0.829(582)	0.789(13723)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FAM76A_LS009	chr1:27744811|27755195:+	FAM76A	family with sequence similarity 76 member A	protein coding gene	no	ENST00000419687.6;ENST00000234549.11;ENST00000373949.5;ENST00000446647.1	3.901	3.017	2.878	0.919(8807)	0.96(674)	0.914(15894)	non tumor-specific	alt_3prime;exon_skip	yes
PIGP_LS006	chr21:37069624|37072434:-	PIGP	phosphatidylinositol glycan anchor biosynthesis class P	protein coding gene	no	ENST00000360525.8;ENST00000464265.5;ENST00000399102.5;ENST00000399103.5;ENST00000479152.1	53.063	33.930	33.493	0.996(9539)	0.997(700)	0.978(17008)	non tumor-specific	exon_skip	yes
MYLK_LS029	chr3:123722280|123725944:-	MYLK	myosin light chain kinase	protein coding gene	no	ENST00000360772.7;ENST00000354792.9;ENST00000359169.5;ENST00000360304.7;ENST00000464489.5;ENST00000346322.9;ENST00000475616.5;ENST00000514623.1	5.287	9.778	2.853	0.617(5914)	0.833(585)	0.619(10761)	non tumor-specific	nAS	yes
HERC1_LS072	chr15:63718694|63718783:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6;ENST00000560983.1	4.012	4.041	4.851	0.737(7065)	0.882(619)	0.92(15992)	non tumor-specific	nAS	yes
UN_STX18-AS1_LS0038	chr4:4649109|4649370:+	STX18-AS1	STX18 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.472	0.716	0.000	0.039(375)	0.053(37)	0(0)	non tumor-specific	nAS	no
UN_ELK4_LS0023	chr1:205621499|205623676:-	ELK4	ETS transcription factor ELK4	protein coding gene	no	.	1.689	0.083	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PHKG2_LS015	chr16:30753557|30756590:+	PHKG2	phosphorylase kinase catalytic subunit gamma 2	protein coding gene	no	ENST00000564838.5	0.069	0.091	1.802	0.844(8083)	0.771(541)	0.763(13261)	non tumor-specific	alt_3prime;exon_skip	yes
STK33_LS003	chr11:8413692|8435494:-	STK33	serine/threonine kinase 33	protein coding gene	no	ENST00000473980.5;ENST00000486305.6;ENST00000447869.5;ENST00000315204.5;ENST00000396672.5;ENST00000358872.7;ENST00000534493.5	10.225	7.435	7.862	0.62(5936)	0.725(509)	0.807(14023)	non tumor-specific	exon_skip	yes
TNFRSF11A_LS016	chr18:62366760|62368701:+	TNFRSF11A	TNF receptor superfamily member 11a	protein coding gene	no	ENST00000586569.2	7.038	6.769	2.211	0.48(4595)	0.548(385)	0.668(11610)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CTSB_LS0178	chr8:11844996|11845099:+	CTSB	cathepsin B	protein coding gene	no	.	12.340	7.072	0.000	0.014(133)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_TRAC_UP_LS0037	chr14:22507723|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	4.378	1.846	0.000	0.144(1381)	0.141(99)	0(0)	non tumor-specific	nAS	no
BTBD7_LS009	chr14:93261677|93293858:-	BTBD7	BTB domain containing 7	protein coding gene	no	ENST00000355125.3	0.344	0.133	0.666	0.448(4288)	0.618(434)	0.152(2645)	non tumor-specific	exon_skip	yes
RAD54L_LS008	chr1:46250119|46258686:+	RAD54L	RAD54 like	protein coding gene	no	ENST00000463715.5;ENST00000442598.5;ENST00000493985.5;ENST00000371975.8;ENST00000469835.5;ENST00000493032.5;ENST00000487700.1	7.339	1.294	1.948	0.707(6770)	0.256(180)	0.641(11150)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01106_LS0022	chr2:110375395|110375716:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	1.643	0.472	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_WHRN_LS0022	chr9:114417525|114417701:-	WHRN	whirlin	protein coding gene	no	.	2.743	0.782	0.000	0.034(322)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC073578.2_UP_LS0004	chr12:131463097|131465077:-	AC073578.2	-	lncRNA gene	no	.	3.740	0.444	0.000	0.03(284)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NIN_UP_LS0004	chr14:50937837|50955854:-	NIN	ninein	protein coding gene	no	.	2.242	0.505	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ASCC3_LS0046	chr6:100848707|100858957:-	ASCC3	activating signal cointegrator 1 complex subunit 3	protein coding gene	no	.	2.083	0.255	0.000	0.011(101)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SEC14L1_LS0018	chr17:77141107|77141572:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	0.226	0.436	0.000	0.009(83)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
PCBP1-AS1_LS010	chr2:69963500|70051203:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000457076.5	0.004	0.008	0.683	0.209(2002)	0.251(176)	0.048(827)	non tumor-specific	nAS	yes
ARID4B_LS043	chr1:235257225|235260642:-	ARID4B	AT-rich interaction domain 4B	protein coding gene	no	ENST00000366603.6;ENST00000349213.7;ENST00000264183.8;ENST00000421364.5;ENST00000491632.5;ENST00000418304.1;ENST00000466653.1	17.714	11.648	11.254	0.875(8385)	0.966(678)	0.967(16813)	non tumor-specific	exon_skip	yes
UN_C21orf58_LS0028	chr21:46322767|46322947:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.	1.534	0.404	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
PCF11_LS012	chr11:83171914|83177085:+	PCF11	PCF11 cleavage and polyadenylation factor subunit	protein coding gene	no	ENST00000298281.8;ENST00000530906.1	11.557	9.585	24.744	0.962(9218)	0.993(697)	0.977(16983)	non tumor-specific	exon_skip	yes
ATAD3B_LS006	chr1:1479108|1480867:+	ATAD3B	ATPase family AAA domain containing 3B	protein coding gene	no	ENST00000308647.7;ENST00000472194.6;ENST00000378736.3	43.146	14.289	13.253	0.994(9523)	0.993(697)	0.975(16942)	non tumor-specific	nAS	yes
RNF144A_LS011	chr2:7024516|7030126:+	RNF144A	ring finger protein 144A	protein coding gene	yes	ENST00000320892.10;ENST00000467276.5;ENST00000432850.1	14.250	9.968	7.613	0.913(8748)	0.91(639)	0.958(16653)	non tumor-specific	exon_skip	yes
PC_LS002	chr11:66849370|66849611:-	PC	podocalyxin like	protein coding gene	no	ENST00000529047.5;ENST00000393955.6;ENST00000393958.6;ENST00000393960.5;ENST00000528224.1	61.567	81.957	27.548	0.986(9447)	0.997(700)	0.976(16971)	non tumor-specific	nAS	yes
UN_ACTB_LS0190	chr7:5527835|5528507:+	ACTB	actin beta	protein coding gene	no	.	87.239	18.921	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
HRC_LS002	chr19:49151332|49152310:-	HRC	histidine rich calcium binding protein	protein coding gene	no	ENST00000598858.5	0.068	0.053	1.139	0.077(737)	0.202(142)	0.293(5087)	non tumor-specific	exon_skip	yes
PTCD3_LS040	chr2:86136562|86136982:+	PTCD3	pentatricopeptide repeat domain 3	protein coding gene	no	ENST00000254630.11	103.602	47.323	65.099	0.996(9545)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MAP4K1_LS035	chr19:38612742|38613880:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	ENST00000591517.5;ENST00000586296.5;ENST00000589130.5;ENST00000396857.6;ENST00000585583.5;ENST00000589002.5;ENST00000592888.5;ENST00000591707.1	9.395	2.241	3.293	0.818(7841)	0.832(584)	0.875(15204)	non tumor-specific	nAS	yes
UN_AC087477.3_UP_LS0001	chr15:96337535|96394307:+	AC087477.3	-	lncRNA gene	no	.	7.763	1.402	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	nAS	no
MAST1_LS010	chr19:12848057|12851934:+	MAST1	microtubule associated serine/threonine kinase 1	protein coding gene	no	ENST00000591495.5;ENST00000251472.8;ENST00000588379.5;ENST00000590204.1	3.178	2.513	3.340	0.49(4698)	0.101(71)	0.441(7671)	non tumor-specific	nAS	yes
UN_DSE_LS0035	chr6:116271418|116273507:-	DSE	dermatan sulfate epimerase	protein coding gene	no	.	2.881	0.185	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
SYCE1L_LS001	chr16:77199512|77206441:+	SYCE1L	synaptonemal complex central element protein 1 like	protein coding gene	no	ENST00000378644.4	0.758	0.209	1.736	0.067(644)	0.019(13)	0.487(8464)	non tumor-specific	nAS	yes
UN_C19orf48_LS0058	chr19:50798346|50798517:+	C19orf48	chromosome 19 open reading frame 48	protein coding gene	no	.	1.428	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC22A18_LS0019	chr11:2903489|2916622:+	SLC22A18	solute carrier family 22 member 18	protein coding gene	no	.	10.504	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CHST6_LS011	chr16:75490769|75494940:-	CHST6	carbohydrate sulfotransferase 6	protein coding gene	no	ENST00000390664.3	1.269	0.604	1.194	0.272(2605)	0.155(109)	0.288(4998)	non tumor-specific	exon_skip	yes
UN_SNX19_LS0035	chr11:130908445|130910018:-	SNX19	sorting nexin 19	protein coding gene	no	.	1.835	1.055	0.000	0.083(799)	0.179(126)	0(0)	non tumor-specific	exon_skip	no
AL136360.2_LS001	chr4:2140021|2140827:+	AL136360.2	-	lncRNA gene	no	ENST00000502636.1	0.366	0.009	0.891	0.014(130)	0.003(2)	0.019(334)	non tumor-specific	nAS	yes
UN_SRP68_LS0015	chr17:76050526|76051077:-	SRP68	signal recognition particle 68	protein coding gene	no	.	4.050	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLDND1_LS0017	chr3:98517147|98518885:-	CLDND1	claudin domain containing 1	protein coding gene	no	.	12.680	0.810	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_LINC00504_LS0016	chr4:14516806|14518175:+	LINC00504	long intergenic non-protein coding RNA 504	lncRNA gene	no	.	5.878	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
EED_LS008	chr11:86264263|86266083:+	EED	embryonic ectoderm development	protein coding gene	yes	ENST00000263360.10;ENST00000327320.8;ENST00000351625.10;ENST00000525244.5;ENST00000533228.1	17.887	9.168	26.401	0.993(9513)	0.994(698)	0.978(17008)	non tumor-specific	exon_skip;intron_retention	yes
UN_TLR1_LS0019	chr4:38804824|38805112:-	TLR1	toll like receptor 1	protein coding gene	no	.	0.443	0.122	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ARPC1A_LS0019	chr7:99354106|99358369:-	ARPC1A	actin related protein 2/3 complex subunit 1A	protein coding gene	no	.	4.693	0.079	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CTSB_LS0056	chr8:11843749|11844281:+	CTSB	cathepsin B	protein coding gene	no	.	7.210	1.956	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC36_LS020	chr16:67363714|67365304:+	LRRC36	leucine rich repeat containing 36	protein coding gene	no	ENST00000569499.6;ENST00000329956.10;ENST00000563189.5;ENST00000561821.1;ENST00000435835.3	0.700	0.100	0.955	0.12(1152)	0.084(59)	0.29(5038)	non tumor-specific	exon_skip	yes
COQ9_LS012	chr16:57456626|57456931:+	COQ9	coenzyme Q9	protein coding gene	no	ENST00000562426.5	0.058	0.186	0.884	0.888(8507)	0.922(647)	0.465(8089)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_MED24_LS0061	chr17:40053380|40053473:-	MED24	mediator complex subunit 24	protein coding gene	no	.	2.921	0.744	0.000	0.019(181)	0.026(18)	0(0)	non tumor-specific	alt_5prime	no
AKR1D1_LS012	chr7:138107311|138107415:+	AKR1D1	aldo-keto reductase family 1 member D1	protein coding gene	no	ENST00000468877.2	2.498	0.088	0.849	0.003(29)	0.013(9)	0.001(25)	non tumor-specific	exon_skip	yes
GBA_LS029	chr1:155244230|155244506:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000473570.5;ENST00000467918.5	3.319	1.782	0.965	0.723(6929)	0.795(558)	0.521(9063)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL158151.4_UP_LS0002	chr9:129109469|129111472:+	AL158151.4	-	lncRNA gene	no	.	1.632	0.043	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PARP6_LS043	chr15:72265991|72266745:-	PARP6	poly(ADP-ribose) polymerase family member 6	protein coding gene	no	ENST00000569795.5;ENST00000616176.4;ENST00000260376.11;ENST00000413097.6;ENST00000287196.13;ENST00000544520.5;ENST00000565443.5;ENST00000567440.5;ENST00000419739.7;ENST00000565999.5;ENST00000568360.5	7.986	5.387	57.088	0.971(9306)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
ARFRP1_LS018	chr20:63706738|63706999:-	ARFRP1	ADP ribosylation factor related protein 1	protein coding gene	no	ENST00000612256.4;ENST00000619493.4;ENST00000614942.4;ENST00000622789.4;ENST00000618838.4;ENST00000612157.4;ENST00000618568.4	57.764	31.579	53.100	0.996(9541)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
UN_SSX2IP_UP_LS0012	chr1:84866138|84893483:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	.	1.233	0.495	0.000	0.013(122)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC00345_LS001	chr13:52484284|52484520:-	LINC00345	long intergenic non-protein coding RNA 345	lncRNA gene	no	ENST00000443679.1	0.020	0.004	0.678	0.108(1036)	0.111(78)	0.08(1386)	non tumor-specific	nAS	yes
UN_SLC5A6_LS0042	chr2:27208525|27208614:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	.	1.538	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF83_LS002	chr19:52594304|52618936:-	ZNF83	zinc finger protein 83	protein coding gene	no	ENST00000601257.5	0.009	0.001	0.750	0.144(1381)	0.131(92)	0.198(3437)	non tumor-specific	exon_skip	yes
UN_EPOP_UP_LS0009	chr17:38682122|38706054:-	EPOP	elongin BC and polycomb repressive complex 2 associated protein	protein coding gene	no	.	0.955	0.088	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
NGEF_LS005	chr2:232884144|232885280:-	NGEF	neuronal guanine nucleotide exchange factor	protein coding gene	no	ENST00000264051.7;ENST00000373552.8;ENST00000424488.5;ENST00000489127.1	25.470	53.028	7.230	0.856(8199)	0.853(599)	0.82(14251)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LDLRAD3_LS0021	chr11:36081778|36098330:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	2.135	0.086	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLC4A8_LS028	chr12:51469176|51469614:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000546663.1	0.240	0.000	0.678	0.003(24)	0(0)	0.003(45)	non tumor-specific	nAS	yes
OTOF_LS018	chr2:26468474|26470593:-	OTOF	otoferlin	protein coding gene	no	ENST00000338581.10;ENST00000339598.7;ENST00000402415.8;ENST00000272371.6;ENST00000403946.7;ENST00000646318.1	3.460	0.640	1.131	0.055(523)	0.023(16)	0.391(6802)	non tumor-specific	nAS	yes
UN_ASB16-AS1_LS0018	chr17:44180271|44180388:+	ASB16-AS1	ASB16 antisense RNA 1	lncRNA gene	no	.	1.125	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DUSP16_LS0029	chr12:12521463|12542228:-	DUSP16	dual specificity phosphatase 16	protein coding gene	no	.	2.124	0.743	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RNU7-173P_UP_LS0024	chr20:47844701|47846085:-	RNU7-173P	RNA, U7 small nuclear 173 pseudogene	small non-coding RNA gene	no	.	8.453	0.117	0.000	0.018(172)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATF7IP2_UP_LS0004	chr16:10285687|10297089:+	ATF7IP2	activating transcription factor 7 interacting protein 2	protein coding gene	no	.	5.134	0.251	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM63C_LS015	chr14:77236732|77238694:+	TMEM63C	transmembrane protein 63C	protein coding gene	no	ENST00000298351.4	5.803	2.603	3.304	0.314(3004)	0.291(204)	0.512(8891)	non tumor-specific	nAS	yes
SLC35C2_LS024	chr20:46357702|46358387:-	SLC35C2	solute carrier family 35 member C2	protein coding gene	no	ENST00000484318.5;ENST00000481809.1	0.498	0.426	2.934	0.925(8864)	0.929(652)	0.934(16231)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RASGRF2_LS019	chr5:81123767|81127074:+	RASGRF2	Ras protein specific guanine nucleotide releasing factor 2	protein coding gene	no	ENST00000265080.8;ENST00000503795.1	3.629	3.776	2.838	0.355(3397)	0.591(415)	0.812(14113)	non tumor-specific	nAS	yes
IQSEC1_LS014	chr3:12924742|12935448:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	ENST00000273221.8;ENST00000646269.1;ENST00000618604.4;ENST00000648114.1;ENST00000613206.1;ENST00000648386.1;ENST00000647458.1	19.737	22.227	23.028	0.917(8788)	0.972(682)	0.978(17001)	non tumor-specific	nAS	yes
ELOC_LS008	chr8:73959818|73966150:-	ELOC	elongin C	protein coding gene	no	.;.	4.734	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
DECR2_LS012	chr16:406397|406736:+	DECR2	2,4-dienoyl-CoA reductase 2	protein coding gene	no	ENST00000631605.1	2.798	0.422	1.146	0.014(138)	0.009(6)	0.573(9958)	non tumor-specific	nAS	yes
LRCH3_LS019	chr3:197852620|197854392:+	LRCH3	leucine rich repeats and calponin homology domain containing 3	protein coding gene	no	ENST00000438796.6;ENST00000428136.2;ENST00000414675.6;ENST00000441090.6;ENST00000334859.8;ENST00000425562.6;ENST00000461674.5;ENST00000452660.5;ENST00000433298.5;ENST00000481048.5;ENST00000438796.6;ENST00000428136.2;ENST00000414675.6;ENST00000441090.6;ENST00000334859.8;ENST00000425562.6;ENST00000461674.5;ENST00000452660.5;ENST00000433298.5;ENST00000481048.5	10.352	6.228	11.847	0.967(9261)	0.986(692)	0.975(16940)	non tumor-specific	alt_3prime;exon_skip	yes
IFT140_LS015	chr16:1554040|1557935:-	IFT140	intraflagellar transport 140	protein coding gene	no	ENST00000439987.6	0.682	0.271	1.319	0.64(6131)	0.655(460)	0.622(10809)	non tumor-specific	nAS	yes
UN_AC012085.1_LS0007	chr12:93640992|93641240:-	AC012085.1	-	pseudogene	no	.	26.884	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VKORC1_LS0013	chr16:31091020|31094569:+	VKORC1	vitamin K epoxide reductase complex subunit 1	protein coding gene	no	.	0.812	0.219	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
GALM_LS002	chr2:38666351|38729556:+	GALM	galactose mutarotase	protein coding gene	no	ENST00000410063.5	0.394	0.280	0.616	0.703(6735)	0.828(581)	0.014(247)	non tumor-specific	exon_skip	yes
GTF3C3_LS013	chr2:196784929|196785441:-	GTF3C3	general transcription factor IIIC subunit 3	protein coding gene	no	ENST00000263956.7;ENST00000448087.5;ENST00000409364.3	23.021	12.503	16.034	0.966(9255)	0.986(692)	0.974(16933)	non tumor-specific	nAS	yes
LIPF_LS013	chr10:88676280|88678445:+	LIPF	lipase F, gastric type	protein coding gene	no	ENST00000394375.7;ENST00000608620.5;ENST00000238983.8;ENST00000355843.2;ENST00000496797.1	698.598	4011.508	6.010	0.071(681)	0.117(82)	0.623(10829)	non tumor-specific	exon_skip	yes
SUSD4_LS017	chr1:223360311|223363278:-	SUSD4	sushi domain containing 4	protein coding gene	no	ENST00000342943.3	0.526	0.313	0.952	0.149(1432)	0.175(123)	0.166(2886)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GANC_LS0036	chr15:42327442|42330576:+	GANC	glucosidase alpha, neutral C	protein coding gene	no	.	1.873	0.045	0.000	0.017(161)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
LINC00381_LS001	chr13:74426418|74434503:+	LINC00381	long intergenic non-protein coding RNA 381	lncRNA gene	no	ENST00000649990.1;ENST00000423629.1	2.214	0.000	0.912	0.013(124)	0(0)	0.022(389)	non tumor-specific	nAS	yes
UN_CD44_LS0051	chr11:35230709|35231046:-	CD44	CD44 molecule (Indian blood group)	protein coding gene	yes	.	3.289	0.371	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC104663.1_LS0001	chr4:107266419|107301489:+	AC104663.1	-	lncRNA gene	no	.	4.388	0.086	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MGRN1_LS0086	chr16:4689659|4689693:+	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	17.118	0.728	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL139021.1_LS001	chr14:58398930|58427064:+	AL139021.1	-	lncRNA gene	no	ENST00000556734.1	0.120	0.048	0.576	0.056(538)	0.033(23)	0.003(45)	non tumor-specific	nAS	yes
AL157392.3_LS001	chr10:13631363|13632560:+	AL157392.3	-	lncRNA gene	no	ENST00000601075.5;ENST00000617260.4	0.172	0.028	0.667	0.007(70)	0.016(11)	0.002(43)	non tumor-specific	nAS	yes
GAL3ST1_LS007	chr22:30557401|30564825:-	GAL3ST1	galactose-3-O-sulfotransferase 1	protein coding gene	no	ENST00000402321.5	0.381	0.112	0.998	0.079(755)	0.094(66)	0.045(780)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BCL2L1_LS0050	chr20:31664890|31665178:+	BCL2L1	BCL2 like 1	protein coding gene	yes	.	0.983	0.327	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SYNC_LS009	chr1:32696044|32702950:-	SYNC	syncoilin, intermediate filament protein	protein coding gene	no	ENST00000426909.1	0.081	0.047	0.639	0.273(2617)	0.45(316)	0.099(1714)	non tumor-specific	alt_5prime	yes
LINC00958_LS001	chr11:12962763|12965108:-	LINC00958	long intergenic non-protein coding RNA 958	lncRNA gene	no	ENST00000527945.2	5.042	1.707	1.939	0.404(3871)	0.389(273)	0.181(3149)	non tumor-specific	nAS	yes
IGHM_LS005	chr14:105855815|105855906:-	IGHM	immunoglobulin heavy constant mu	no	no	ENST00000637539.2;ENST00000390559.6	77.184	43.487	6.114	0.907(8686)	0.964(677)	0.839(14581)	non tumor-specific	nAS	yes
UN_FAM110A_LS0003	chr20:834082|844708:+	FAM110A	family with sequence similarity 110 member A	protein coding gene	no	.	2.171	0.121	0.000	0.034(322)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
DAZ4_LS003	chrY:24841243|24841804:+	DAZ4	deleted in azoospermia 4	protein coding gene	no	ENST00000415508.6;ENST00000449750.7;ENST00000382314.6;ENST00000382432.9;ENST00000440066.6;ENST00000634662.1;ENST00000382296.4	2.749	0.222	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_AC233300.1_UP_LS0001	chrX:48890697|48898492:+	AC233300.1	-	lncRNA gene	no	.	3.002	0.638	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
TCP11_LS012	chr6:35128419|35129062:-	TCP11	t-complex 11	protein coding gene	no	ENST00000479418.6;ENST00000445851.6	0.111	0.000	0.643	0.001(7)	0(0)	0.002(33)	non tumor-specific	exon_skip	yes
ENTPD1-AS1_LS006	chr10:95876660|95897558:-	ENTPD1-AS1	ENTPD1 antisense RNA 1	lncRNA gene	no	ENST00000452942.6	0.345	0.239	1.139	0.479(4590)	0.585(411)	0.619(10751)	non tumor-specific	nAS	yes
UN_LINC00621_LS0024	chr13:22909956|22910863:-	LINC00621	long intergenic non-protein coding RNA 621	lncRNA gene	no	.	1.682	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DENND4C_LS037	chr9:19357154|19357965:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000434457.6;ENST00000602925.5;ENST00000380437.8;ENST00000494124.2;ENST00000380427.5;ENST00000361024.6	27.322	25.468	21.726	0.947(9072)	0.986(692)	0.971(16872)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TP53BP1_LS028	chr15:43446590|43446766:-	TP53BP1	tumor protein p53 binding protein 1	protein coding gene	yes	ENST00000411772.5;ENST00000605155.1	0.281	0.158	2.009	0.49(4690)	0.534(375)	0.771(13405)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
YBEY_LS010	chr21:46287123|46291334:+	YBEY	ybeY metalloendoribonuclease	protein coding gene	no	ENST00000397701.8;ENST00000468924.5;ENST00000329319.7;ENST00000492864.1;ENST00000397691.1	51.791	26.710	24.725	0.996(9539)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
JCHAIN_LS009	chr4:70666514|70681778:-	JCHAIN	joining chain of multimeric IgA and IgM	protein coding gene	no	ENST00000470866.1	0.400	2.701	0.660	0.561(5372)	0.717(503)	0.007(114)	non tumor-specific	nAS	yes
EIF2B4_LS012	chr2:27367559|27368372:-	EIF2B4	eukaryotic translation initiation factor 2B subunit delta	protein coding gene	no	.;.	11.740	0.300	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
PBX1_LS012	chr1:164590434|164792494:+	PBX1	PBX homeobox 1	protein coding gene	yes	ENST00000496120.6	0.004	0.008	0.671	0.206(1970)	0.319(224)	0.037(639)	non tumor-specific	exon_skip	yes
MADD_LS008	chr11:47269906|47273827:+	MADD	MAP kinase activating death domain	protein coding gene	yes	ENST00000444117.5	0.454	0.321	1.433	0.621(5948)	0.708(497)	0.721(12530)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LEO1_LS010	chr15:51958826|51959899:-	LEO1	LEO1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000299601.9	49.570	25.673	20.464	0.992(9501)	0.997(700)	0.977(16986)	non tumor-specific	alt_3prime;exon_skip	yes
DNAH8_LS053	chr6:38872782|38872906:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000449981.6;ENST00000359357.7	10.189	0.383	0.914	0.048(461)	0.038(27)	0.094(1637)	non tumor-specific	alt_3prime	yes
NALCN-AS1_LS003	chr13:101049365|101055157:+	NALCN-AS1	NALCN antisense RNA 1	lncRNA gene	no	ENST00000457843.1	3.146	0.087	0.723	0.004(39)	0.001(1)	0.034(583)	non tumor-specific	nAS	yes
RP9P_LS002	chr7:32918372|32921339:-	RP9P	RP9 pseudogene	pseudogene	no	ENST00000450133.5;ENST00000381639.3	17.534	8.394	21.940	0.98(9387)	0.977(686)	0.978(16991)	non tumor-specific	nAS	yes
UN_GPAT4_LS0024	chr8:41609485|41609784:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	.	6.676	1.509	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
KBTBD11-OT1_LS002	chr8:1763941|1770932:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1	0.693	0.371	0.785	0.052(498)	0.125(88)	0.296(5150)	non tumor-specific	alt_5prime	yes
NASP_LS033	chr1:45615471|45616337:+	NASP	nuclear autoantigenic sperm protein	protein coding gene	no	ENST00000537798.5;ENST00000350030.7;ENST00000372052.8;ENST00000351223.7;ENST00000530073.5;ENST00000481782.1;ENST00000531612.5;ENST00000534450.1	180.608	66.545	184.817	0.999(9572)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_CCR3_LS0004	chr3:46163862|46189589:+	CCR3	C-C motif chemokine receptor 3	protein coding gene	no	.	2.317	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AIFM3_LS004	chr22:20966546|20967805:+	AIFM3	apoptosis inducing factor mitochondria associated 3	protein coding gene	no	ENST00000441376.6;ENST00000472575.5	0.960	1.502	1.836	0.188(1806)	0.118(83)	0.277(4810)	non tumor-specific	exon_skip	yes
UN_ACO1_LS0013	chr9:32405301|32405485:+	ACO1	aconitase 1	protein coding gene	no	.	1.376	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UBAP1L_LS005	chr15:65094576|65099505:-	UBAP1L	ubiquitin associated protein 1 like	protein coding gene	no	ENST00000559089.5;ENST00000502113.2;ENST00000559089.5;ENST00000502113.2;ENST00000559089.5;ENST00000502113.2	0.224	0.188	2.931	0.335(3213)	0.355(249)	0.893(15526)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL162632.2_UP_LS0001	chr14:45705995|45706290:-	AL162632.2	-	pseudogene	no	.	1.650	0.353	0.000	0.015(144)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_C1orf116_LS0002	chr1:207019286|207019342:+	C1orf116	chromosome 1 open reading frame 116	protein coding gene	no	.	5.743	0.774	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
AHNAK2_LS059	chr14:104944944|104949895:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.;.;.	1.558	0.264	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
GABRB3_LS007	chr15:26583414|26621314:-	GABRB3	gamma-aminobutyric acid type A receptor subunit beta3	protein coding gene	no	ENST00000628124.2;ENST00000311550.9;ENST00000622697.4;ENST00000541819.6;ENST00000635832.1;ENST00000635994.1;ENST00000299267.8;ENST00000636466.1;ENST00000638099.1;ENST00000400188.7;ENST00000555632.5;ENST00000555094.5;ENST00000545868.4	9.332	9.480	2.100	0.419(4014)	0.708(497)	0.64(11133)	non tumor-specific	exon_skip	yes
GTSF1_LS014	chr12:54471277|54472144:-	GTSF1	gametocyte specific factor 1	protein coding gene	no	ENST00000549083.1	0.029	0.000	0.674	0.014(136)	0(0)	0.003(45)	non tumor-specific	nAS	yes
PRIM2_LS013	chr6:57537625|57586996:+	PRIM2	DNA primase subunit 2	protein coding gene	no	ENST00000550475.2	0.649	0.224	0.772	0.522(4998)	0.395(277)	0.265(4613)	non tumor-specific	nAS	yes
UN_CYB5R3_LS0027	chr22:42619113|42619164:+	CYB5R3	cytochrome b5 reductase 3	protein coding gene	no	.	4.917	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
RNF157_LS021	chr17:76165545|76166461:-	RNF157	ring finger protein 157	protein coding gene	no	ENST00000269391.10;ENST00000647930.1;ENST00000319945.10;ENST00000591615.1	6.704	5.122	4.769	0.682(6531)	0.714(501)	0.862(14990)	non tumor-specific	exon_skip	yes
FAR2P4_LS010	chr2:131302279|131303037:+	FAR2P4	fatty acyl-CoA reductase 2 pseudogene 4	pseudogene	no	ENST00000425399.1	2.125	0.069	1.005	0.09(866)	0.021(15)	0.049(850)	non tumor-specific	nAS	yes
FP475955.2_LS001	chr21:6905165|6906517:+	FP475955.2	-	lncRNA gene	no	ENST00000623720.1	0.061	0.015	0.955	0.017(166)	0.019(13)	0.001(10)	non tumor-specific	nAS	yes
CDR2L_LS004	chr17:75002228|75003183:+	CDR2L	cerebellar degeneration related protein 2 like	protein coding gene	no	ENST00000337231.5	31.079	15.766	13.920	0.94(9008)	0.959(673)	0.931(16181)	non tumor-specific	nAS	yes
UN_PER1_LS0037	chr17:8143614|8143649:+	PER1	post-GPI attachment to proteins phospholipase 3	protein coding gene	no	.	4.631	0.961	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_RPL31P52_UP_LS0004	chr12:120469714|120495823:-	RPL31P52	ribosomal protein L31 pseudogene 52	pseudogene	no	.	0.831	0.347	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMAD6_LS0017	chr15:66704075|66710395:+	SMAD6	SMAD family member 6	protein coding gene	no	.	0.899	0.652	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
LINC00937_LS007	chr12:8370429|8390287:-	LINC00937	long intergenic non-protein coding RNA 937	lncRNA gene	no	ENST00000539348.5	0.463	0.107	0.750	0.045(433)	0.019(13)	0.027(470)	non tumor-specific	nAS	yes
UN_ABHD12_LS0096	chr20:25300861|25302241:+	ABHD12	abhydrolase domain containing 12, lysophospholipase	protein coding gene	no	.	3.407	0.578	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL356124.1_LS005	chr6:129540542|129546395:-	AL356124.1	-	lncRNA gene	no	ENST00000430296.5;ENST00000419061.1	0.104	0.017	0.677	0.036(348)	0.019(13)	0.054(939)	non tumor-specific	nAS	yes
AC113133.1_LS002	chr8:41661709|41664087:+	AC113133.1	-	lncRNA gene	no	ENST00000520418.1	0.224	0.068	1.358	0.075(723)	0.098(69)	0.205(3564)	non tumor-specific	nAS	yes
UN_RPF2_LS0017	chr6:111008137|111011832:+	RPF2	ribosome production factor 2 homolog	protein coding gene	no	.	1.555	0.002	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MOCOS_LS017	chr18:36257073|36260037:+	MOCOS	molybdenum cofactor sulfurase	protein coding gene	no	ENST00000261326.5;ENST00000588132.1	12.157	9.868	4.906	0.893(8554)	0.96(674)	0.796(13835)	non tumor-specific	exon_skip	yes
MFAP2_LS008	chr1:16976923|16977109:-	MFAP2	microfibril associated protein 2	protein coding gene	no	ENST00000375534.7;ENST00000375535.3;ENST00000476788.5;ENST00000478684.5;ENST00000492598.1	150.875	35.191	32.165	0.939(9001)	0.967(679)	0.872(15162)	non tumor-specific	exon_skip	yes
ANKRD40CL_LS003	chr17:50763557|50766874:-	ANKRD40CL	ANKRD40 C-terminal like	protein coding gene	no	ENST00000450727.5;ENST00000502517.5	5.562	9.401	3.882	0.145(1390)	0.118(83)	0.053(918)	non tumor-specific	nAS	yes
ENAH_LS025	chr1:225567414|225580167:-	ENAH	ENAH actin regulator	protein coding gene	no	ENST00000391874.2	0.019	0.014	0.623	0.618(5917)	0.661(464)	0.023(393)	non tumor-specific	nAS	yes
INPP5F_LS018	chr10:119798610|119804173:+	INPP5F	inositol polyphosphate-5-phosphatase F	protein coding gene	no	ENST00000649297.1;ENST00000648621.1;ENST00000361976.7;ENST00000649251.1;ENST00000649742.1;ENST00000650623.1;ENST00000647933.1;ENST00000650305.1;ENST00000648661.1;ENST00000648262.1;ENST00000648515.1;ENST00000649454.1;ENST00000649957.1;ENST00000647699.1	6.522	3.732	6.125	0.816(7815)	0.879(617)	0.932(16197)	non tumor-specific	exon_skip	yes
UN_LINC00578_LS0115	chr3:177651630|177665791:+	LINC00578	long intergenic non-protein coding RNA 578	lncRNA gene	no	.	3.096	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BANK1_LS004	chr4:101422658|101427561:+	BANK1	B cell scaffold protein with ankyrin repeats 1	protein coding gene	no	ENST00000502990.5	0.515	0.042	0.885	0.027(261)	0.001(1)	0(6)	non tumor-specific	nAS	yes
GTF2I_LS065	chr7:74758855|74759548:+	GTF2I	general transcription factor IIi	protein coding gene	no	ENST00000573035.5;ENST00000614986.4;ENST00000621734.4;ENST00000620879.4	168.045	81.100	1.128	0.987(9456)	0.993(697)	0.4(6949)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SCP2D1_UP_LS0001	chr20:18794106|18794531:+	SCP2D1	SCP2 sterol binding domain containing 1	protein coding gene	no	.	2.214	0.861	0.000	0.067(645)	0.077(54)	0(0)	non tumor-specific	nAS	no
UN_NHLRC2_LS0017	chr10:113901897|113902505:+	NHLRC2	NHL repeat containing 2	protein coding gene	no	.	2.334	0.353	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
CCDC80_LS003	chr3:112607256|112609978:-	CCDC80	coiled-coil domain containing 80	protein coding gene	no	ENST00000206423.7;ENST00000439685.6;ENST00000479368.1	158.133	135.117	88.292	0.971(9305)	0.98(688)	0.964(16750)	non tumor-specific	exon_skip	yes
UN_AL596442.1_UP_LS0035	chr6:169941678|169941782:+	AL596442.1	-	lncRNA gene	no	.	2.206	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RAD18_LS010	chr3:8939653|8941467:-	RAD18	RAD18 E3 ubiquitin protein ligase	protein coding gene	no	ENST00000264926.6;ENST00000415439.5	10.733	4.196	2.814	0.914(8760)	0.917(644)	0.873(15167)	non tumor-specific	nAS	yes
UN_WASH8P_LS0058	chr12:18471|19018:-	WASH8P	WAS protein family homolog 8, pseudogene	pseudogene	no	.	6.978	0.574	0.000	0.096(922)	0.021(15)	0(0)	non tumor-specific	nAS	no
CD300C_LS003	chr17:74544947|74545722:-	CD300C	CD300c molecule	protein coding gene	no	ENST00000330793.1	3.728	2.749	1.872	0.712(6824)	0.726(510)	0.638(11093)	non tumor-specific	exon_skip	yes
EGFL7_LS001	chr9:136659630|136664692:+	EGFL7	EGF like domain multiple 7	protein coding gene	no	ENST00000371699.5	0.239	0.139	1.780	0.554(5312)	0.848(595)	0.589(10243)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MERTK_LS0031	chr2:112003795|112003904:+	MERTK	MER proto-oncogene, tyrosine kinase	protein coding gene	yes	.	3.172	0.786	0.000	0.006(58)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
AC008703.1_LS001	chr5:159485134|159488228:-	AC008703.1	-	lncRNA gene	no	ENST00000637629.1	3.943	0.581	0.754	0.014(134)	0.011(8)	0.031(536)	non tumor-specific	nAS	yes
TLE4_LS049	chr9:79718071|79718722:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	ENST00000496114.5	1.299	0.677	0.812	0.13(1248)	0.199(140)	0.319(5538)	non tumor-specific	exon_skip	yes
UN_ZNF33A_LS0034	chr10:38034400|38054375:+	ZNF33A	zinc finger protein 33A	protein coding gene	no	.	3.071	1.483	0.000	0.154(1471)	0.187(131)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_CDT1_LS0007	chr16:88806121|88806449:+	CDT1	chromatin licensing and DNA replication factor 1	protein coding gene	no	.	20.617	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MXD3_LS017	chr5:177310697|177311379:-	MXD3	MAX dimerization protein 3	protein coding gene	no	ENST00000427908.6;ENST00000423571.6;ENST00000439742.6;ENST00000513063.5;ENST00000513169.1	14.573	1.817	13.141	0.981(9400)	0.912(640)	0.974(16926)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
KIF21A_LS037	chr12:39337203|39340165:-	KIF21A	kinesin family member 21A	protein coding gene	no	ENST00000636569.1;ENST00000361961.7;ENST00000552961.5;ENST00000544797.6;ENST00000361418.9;ENST00000541463.6;ENST00000547108.5	19.462	13.705	8.885	0.843(8079)	0.94(660)	0.939(16320)	non tumor-specific	nAS	yes
ANXA6_LS036	chr5:151140243|151157680:-	ANXA6	annexin A6	protein coding gene	no	ENST00000517757.5	0.236	0.201	0.876	0.535(5130)	0.694(487)	0.403(7007)	non tumor-specific	exon_skip	yes
PLCH2_LS035	chr1:2503643|2503922:+	PLCH2	phospholipase C eta 2	protein coding gene	no	ENST00000462379.1	6.377	2.413	4.024	0.155(1484)	0.141(99)	0.513(8910)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02298_UP_LS0027	chr14:105077449|105077550:+	LINC02298	long intergenic non-protein coding RNA 2298	lncRNA gene	no	.	3.026	0.770	0.000	0.047(450)	0.019(13)	0(0)	non tumor-specific	nAS	no
HEATR4_LS017	chr14:73521039|73522272:-	HEATR4	HEAT repeat containing 4	protein coding gene	no	ENST00000553558.5;ENST00000334988.2	1.190	0.304	0.746	0.004(42)	0.007(5)	0.109(1902)	non tumor-specific	exon_skip	yes
UN_AC087500.1_LS0011	chr17:5223484|5235114:+	AC087500.1	-	lncRNA gene	no	.	1.052	0.420	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC008957.1_LS005	chr5:36705851|36725114:-	AC008957.1	-	lncRNA gene	no	ENST00000512329.1;ENST00000508745.1	1.132	0.480	0.900	0.226(2165)	0.242(170)	0.248(4307)	non tumor-specific	nAS	yes
UN_MYH9_LS0518	chr22:36326035|36326568:-	MYH9	myosin heavy chain 9	protein coding gene	yes	.	8.279	9.204	0.000	0.007(64)	0.05(35)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SYNE2_LS0190	chr14:64225633|64225724:-	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	.	2.577	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GAA_LS0023	chr17:80108405|80108489:+	GAA	glucosidase alpha, acid	protein coding gene	no	.	14.069	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_UBP1_LS0030	chr3:33416834|33439736:-	UBP1	upstream binding protein 1	protein coding gene	no	.	2.383	0.125	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PTTG1IP_LS003	chr21:44851627|44865395:-	PTTG1IP	PTTG1 interacting protein	protein coding gene	yes	ENST00000445724.3	0.050	0.095	0.680	0.303(2904)	0.306(215)	0.168(2921)	non tumor-specific	exon_skip	yes
UN_NAT16_UP_LS0008	chr7:101192907|101195862:-	NAT16	N-acetyltransferase 16 (putative)	protein coding gene	no	.	2.930	1.177	0.000	0.018(174)	0.019(13)	0(0)	non tumor-specific	nAS	no
AMPH_LS007	chr7:38394214|38422421:-	AMPH	amphiphysin	protein coding gene	no	ENST00000325590.9;ENST00000441628.5;ENST00000471913.5;ENST00000467580.5	3.478	2.007	2.966	0.342(3281)	0.504(354)	0.819(14237)	non tumor-specific	exon_skip	yes
UN_LINC02398_LS0002	chr12:20019696|20037883:+	LINC02398	long intergenic non-protein coding RNA 2398	lncRNA gene	no	.	2.281	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BABAM2_LS011	chr2:28129380|28233143:+	BABAM2	BRISC and BRCA1 A complex member 2	protein coding gene	no	ENST00000379629.7	0.285	0.174	0.734	0.413(3960)	0.288(202)	0.257(4473)	non tumor-specific	exon_skip	yes
AOC4P_LS003	chr17:42868875|42872405:+	AOC4P	amine oxidase copper containing 4, pseudogene	pseudogene	no	ENST00000566825.5;ENST00000563852.1	0.934	1.118	2.524	0.158(1516)	0.546(383)	0.546(9497)	non tumor-specific	nAS	yes
LINC01602_LS002	chr8:57864618|57980894:+	LINC01602	long intergenic non-protein coding RNA 1602	lncRNA gene	no	ENST00000650579.1	4.622	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	nAS	yes
PSMC4_LS004	chr19:39972555|39974294:+	PSMC4	proteasome 26S subunit, ATPase 4	protein coding gene	no	ENST00000157812.6;ENST00000593455.5;ENST00000455878.2;ENST00000601697.5;ENST00000596386.1	220.858	113.522	96.400	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_SERPING1_LS0086	chr11:57611914|57614357:-	SERPING1	serpin family G member 1	protein coding gene	no	.	9.383	5.782	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAAHP1_LS014	chr1:46455910|46482210:+	FAAHP1	fatty acid amide hydrolase pseudogene 1	pseudogene	no	ENST00000455247.1	0.630	0.181	0.725	0.238(2280)	0.218(153)	0.071(1231)	non tumor-specific	nAS	yes
UN_POLD2P1_UP_LS0008	chr5:92844460|92885986:+	POLD2P1	DNA polymerase delta 2, accessory subunit pseudogene 1	pseudogene	no	.	7.440	0.073	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SYNCRIP_LS008	chr6:85637356|85640221:-	SYNCRIP	synaptotagmin binding cytoplasmic RNA interacting protein	protein coding gene	no	ENST00000616122.4;ENST00000355238.10;ENST00000369622.7;ENST00000444272.1	118.659	69.941	69.913	0.991(9499)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_TUBB4B_LS0054	chr9:137242620|137242789:-	TUBB4B	tubulin beta 4B class IVb	protein coding gene	no	.	1.492	0.729	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM72D_LS003	chr1:145103131|145111503:+	FAM72D	family with sequence similarity 72 member D	protein coding gene	no	ENST00000400889.2	6.095	0.786	0.857	0.852(8166)	0.53(372)	0.288(5008)	non tumor-specific	nAS	yes
UN_HNF4A_LS0037	chr20:44406232|44407371:+	HNF4A	hepatocyte nuclear factor 4 alpha	protein coding gene	yes	.	3.608	1.898	0.000	0.01(94)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
ANK2_LS051	chr4:113336466|113336577:+	ANK2	ankyrin 2	protein coding gene	no	ENST00000504887.1	0.113	1.086	0.685	0.007(71)	0.11(77)	0.008(137)	non tumor-specific	nAS	yes
ILK_LS019	chr11:6608489|6608884:+	ILK	integrin linked kinase	protein coding gene	yes	ENST00000528995.5;ENST00000528995.5;ENST00000528995.5	0.090	0.117	2.288	0.267(2555)	0.283(199)	0.776(13481)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PITPNM1_LS002	chr11:67493062|67493410:-	PITPNM1	phosphatidylinositol transfer protein membrane associated 1	protein coding gene	no	ENST00000534749.5;ENST00000436757.6;ENST00000527370.5;ENST00000356404.7	65.767	40.961	40.616	0.994(9521)	0.99(695)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime	yes
FUT3_LS018	chr19:5846629|5851390:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	.;.	3.814	0.085	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CSGALNACT1_LS012	chr8:19506130|19585166:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000332246.10;ENST00000522573.5	0.500	0.415	1.406	0.171(1643)	0.222(156)	0.596(10353)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ME1_LS009	chr6:83315413|83346173:-	ME1	protocadherin beta 16	protein coding gene	no	ENST00000369705.3	24.280	24.472	23.860	0.87(8332)	0.983(690)	0.968(16824)	non tumor-specific	exon_skip	yes
ANKFY1_LS008	chr17:4172680|4173909:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	.;.	1.075	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SERP1_LS0043	chr3:150566132|150567693:+	SERP1	stress associated endoplasmic reticulum protein 1	protein coding gene	no	.	4.159	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ARMH1_LS024	chr1:44704173|44723803:+	ARMH1	armadillo like helical domain containing 1	protein coding gene	no	ENST00000648290.1	0.737	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
CACNA1C_LS003	chr12:2115545|2120325:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000335762.9;ENST00000399655.5;ENST00000480911.5;ENST00000399595.5;ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000399621.5;ENST00000399637.5;ENST00000399591.5;ENST00000399641.5;ENST00000347598.8;ENST00000399606.5;ENST00000399601.5;ENST00000344100.7;ENST00000399629.5;ENST00000327702.11;ENST00000399649.5;ENST00000402845.7;ENST00000399603.5;ENST00000399634.5;ENST00000399617.5;ENST00000406454.7	1.170	1.768	3.453	0.19(1818)	0.332(233)	0.763(13262)	non tumor-specific	alt_3prime	yes
AC092375.1_LS001	chr16:21939052|21939682:+	AC092375.1	-	pseudogene	no	ENST00000550410.2	2.079	0.000	0.762	0.003(28)	0(0)	0.009(165)	non tumor-specific	nAS	yes
RPTOR_LS028	chr17:80922827|80923490:+	RPTOR	regulatory associated protein of MTOR complex 1	protein coding gene	no	ENST00000306801.7;ENST00000544334.6;ENST00000575542.5;ENST00000576366.1	14.935	8.531	13.713	0.975(9338)	0.989(694)	0.975(16951)	non tumor-specific	alt_5prime;exon_skip	yes
ABLIM3_LS038	chr5:149251428|149252755:+	ABLIM3	actin binding LIM protein family member 3	protein coding gene	no	ENST00000356541.4	0.713	1.019	0.644	0.277(2651)	0.397(279)	0.028(481)	non tumor-specific	nAS	yes
UN_OSBPL9P1_UP_LS0007	chr3:80072784|80155013:+	OSBPL9P1	oxysterol binding protein like 9 pseudogene 1	pseudogene	no	.	1.438	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC010486.1_UP_LS0037	chr5:85635252|85638794:-	AC010486.1	-	lncRNA gene	no	.	1.628	0.000	0.000	0.006(58)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM259_LS0031	chr19:1010275|1010323:+	TMEM259	transmembrane protein 259	protein coding gene	no	.	5.727	0.622	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PMPCB_LS0015	chr7:103312131|103328915:+	PMPCB	peptidase, mitochondrial processing subunit beta	protein coding gene	no	.	2.666	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_IFT43_LS0037	chr14:75980931|75981038:-	IFT43	intraflagellar transport 43	protein coding gene	no	.	0.386	0.052	0.000	0.017(165)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TSEN34_LS003	chr19:54190450|54191361:+	TSEN34	tRNA splicing endonuclease subunit 34	protein coding gene	no	ENST00000302937.8	7.922	5.015	7.760	0.962(9221)	0.98(688)	0.947(16460)	non tumor-specific	alt_5prime;intron_retention	yes
RFX4_LS013	chr12:106682054|106696283:+	RFX4	regulatory factor X4	protein coding gene	no	ENST00000539967.6	0.075	0.000	0.913	0.001(8)	0(0)	0.002(33)	non tumor-specific	exon_skip	yes
UN_AC106738.1_LS0004	chr16:54938055|54939124:-	AC106738.1	-	lncRNA gene	no	.	1.785	0.423	0.000	0.008(73)	0.011(8)	0(0)	non tumor-specific	nAS	no
CERS5_LS011	chr12:50133064|50134546:-	CERS5	ceramide synthase 5	protein coding gene	no	ENST00000551697.5;ENST00000553122.5;ENST00000551697.5;ENST00000553122.5;ENST00000551697.5;ENST00000553122.5	0.345	0.644	2.048	0.201(1927)	0.178(125)	0.498(8658)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ADD3_LS0003	chr10:109996446|110079240:+	ADD3	adducin 3	protein coding gene	no	.	1.501	1.624	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RBM23_LS0015	chr14:22901161|22901213:+	RBM23	RNA binding motif protein 23	protein coding gene	no	.	2.610	0.404	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UQCC1_LS037	chr20:35394196|35410055:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	ENST00000495752.1	0.222	0.169	0.762	0.356(3411)	0.427(300)	0.348(6042)	non tumor-specific	exon_skip;mutex_exons	yes
Z99756.1_LS001	chr22:43276011|43281937:+	Z99756.1	-	lncRNA gene	no	ENST00000458463.1	0.079	0.000	0.871	0.006(57)	0(0)	0.006(109)	non tumor-specific	nAS	yes
UN_WRN_LS0035	chr8:31154755|31157371:+	WRN	WRN RecQ like helicase	protein coding gene	no	.	1.627	0.003	0.000	0.012(114)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PLPPR2_LS002	chr19:11356976|11357619:+	PLPPR2	phospholipid phosphatase related 2	protein coding gene	no	ENST00000591329.5;ENST00000586380.5	0.094	0.300	2.042	0.76(7277)	0.761(534)	0.84(14609)	non tumor-specific	alt_3prime	yes
FAM71F1_LS001	chr7:128709207|128713923:+	FAM71F1	family with sequence similarity 71 member F1	protein coding gene	no	ENST00000485070.5;ENST00000484425.6;ENST00000493738.5;ENST00000469348.5	2.171	0.000	0.731	0.03(290)	0(0)	0.136(2369)	non tumor-specific	nAS	yes
ST3GAL6_LS029	chr3:98782968|98784945:+	ST3GAL6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein coding gene	no	.;.	1.548	0.714	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CSF3R_LS0050	chr1:36480246|36481478:-	CSF3R	colony stimulating factor 3 receptor	protein coding gene	yes	.	11.977	1.833	0.000	0.006(55)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
ARAF_LS018	chrX:47567131|47567230:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8	98.493	75.285	74.320	0.994(9524)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
TTC37_LS026	chr5:95520818|95522054:-	TTC37	tetratricopeptide repeat domain 37	protein coding gene	no	ENST00000649566.1;ENST00000358746.6;ENST00000507805.5	13.529	10.718	23.750	0.953(9133)	0.984(691)	0.974(16931)	non tumor-specific	exon_skip	yes
UN_CCDC80_LS0008	chr3:112605316|112605425:+	CCDC80	coiled-coil domain containing 80	protein coding gene	no	.	4.710	0.774	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLEKHH1_LS023	chr14:67576005|67576395:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5	6.708	6.365	6.722	0.715(6847)	0.712(500)	0.851(14798)	non tumor-specific	nAS	yes
UN_APOBR_LS0039	chr16:28497508|28497592:+	APOBR	apolipoprotein B receptor	protein coding gene	no	.	4.974	2.649	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
NUP133_LS001	chr1:229442040|229444914:-	NUP133	nucleoporin 133	protein coding gene	no	ENST00000261396.5;ENST00000490352.1	42.644	19.439	45.326	0.986(9447)	0.991(696)	0.979(17019)	non tumor-specific	exon_skip	yes
DAB2IP_LS008	chr9:121699458|121757013:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	ENST00000394340.7;ENST00000259371.6;ENST00000408936.7;ENST00000373782.7	9.264	9.351	10.382	0.897(8596)	0.952(668)	0.921(16006)	non tumor-specific	exon_skip	yes
COL14A1_LS002	chr8:120071165|120105583:+	COL14A1	collagen type XIV alpha 1 chain	protein coding gene	no	ENST00000498051.6	2.578	0.174	0.669	0.001(11)	0.003(2)	0.054(931)	non tumor-specific	nAS	yes
UN_AC016712.1_UP_LS0001	chr2:222695288|222713228:+	AC016712.1	-	pseudogene	no	.	1.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0194	chr14:105624641|105643225:+	AC246787.2	-	lncRNA gene	no	.	120.558	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004253.2_UP_LS0002	chr17:31762902|31771095:+	AC004253.2	-	lncRNA gene	no	.	5.106	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
IL22RA1_LS001	chr1:24121737|24123302:-	IL22RA1	interleukin 22 receptor subunit alpha 1	protein coding gene	no	ENST00000270800.1	10.007	8.124	2.159	0.572(5485)	0.672(472)	0.485(8433)	non tumor-specific	alt_3prime	yes
TVP23B_LS006	chr17:18789435|18797579:+	TVP23B	trans-golgi network vesicle protein 23 homolog B	protein coding gene	no	ENST00000571018.5;ENST00000572845.1	0.857	0.558	0.819	0.914(8758)	0.957(672)	0.37(6424)	non tumor-specific	alt_3prime;exon_skip	yes
DDX60L_LS018	chr4:168396124|168400826:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000260184.11;ENST00000511577.5;ENST00000514580.5;ENST00000503190.1;ENST00000505863.1	6.492	4.017	4.681	0.742(7105)	0.781(548)	0.754(13101)	non tumor-specific	alt_3prime	yes
SLC27A6_LS005	chr5:128965689|128965978:+	SLC27A6	solute carrier family 27 member 6	protein coding gene	no	.;.	0.963	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
MMP23B_LS006	chr1:1632913|1633188:+	MMP23B	matrix metallopeptidase 23B	protein coding gene	no	ENST00000479814.5;ENST00000479814.5	0.243	0.204	0.874	0.374(3583)	0.473(332)	0.287(4996)	non tumor-specific	alt_3prime;exon_skip	yes
CPB1_LS001	chr3:148791265|148827654:+	CPB1	carboxypeptidase B1	protein coding gene	no	ENST00000491148.5	0.818	0.400	0.895	0.033(318)	0.01(7)	0.034(587)	non tumor-specific	alt_5prime	yes
UN_AC069114.2_UP_LS0001	chr18:71836783|71837168:+	AC069114.2	-	pseudogene	no	.	3.724	1.395	0.000	0.003(29)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_LS0016	chr14:106511307|106512490:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	23.184	1.724	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL671762.1_UP_LS0502	chr6:31816791|31828722:+	AL671762.1	-	lncRNA gene	no	.	209.442	44.026	0.000	0.006(56)	0.01(7)	0(0)	non tumor-specific	nAS	no
CCDC40_LS031	chr17:80089884|80092079:+	CCDC40	coiled-coil domain containing 40	protein coding gene	no	ENST00000573903.1	0.442	0.004	0.852	0.004(40)	0.001(1)	0.175(3041)	non tumor-specific	exon_skip;mutex_exons	yes
XDH_LS022	chr2:31375554|31377053:-	XDH	xanthine dehydrogenase	protein coding gene	no	ENST00000379416.3	6.160	8.585	1.711	0.401(3840)	0.434(305)	0.265(4614)	non tumor-specific	exon_skip	yes
EFCAB13_LS027	chr17:47374966|47377766:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000331493.6;ENST00000517484.5;ENST00000520776.5	1.488	0.596	4.230	0.314(3011)	0.385(270)	0.846(14703)	non tumor-specific	exon_skip	yes
ASCC2_LS016	chr22:29808185|29809895:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000464287.1	0.040	0.046	0.680	0.575(5512)	0.585(411)	0.017(303)	non tumor-specific	nAS	yes
HKR1_LS044	chr19:37344774|37347190:+	HKR1	zinc finger protein 875	protein coding gene	no	ENST00000324411.8	0.261	0.019	0.660	0.029(278)	0.033(23)	0.063(1096)	non tumor-specific	exon_skip;mutex_exons	yes
KLHL8_LS004	chr4:87170615|87176757:-	KLHL8	kelch like family member 8	protein coding gene	no	ENST00000273963.9;ENST00000498875.6;ENST00000425278.6;ENST00000506985.5;ENST00000512111.1;ENST00000504029.1	10.204	9.298	5.088	0.894(8567)	0.967(679)	0.946(16452)	non tumor-specific	exon_skip	yes
CNTRL_LS010	chr9:121111274|121112459:+	CNTRL	centriolin	protein coding gene	no	ENST00000468952.5	0.144	0.025	0.686	0.053(512)	0.046(32)	0.054(936)	non tumor-specific	nAS	yes
TRIM8_LS002	chr10:102645187|102655080:+	TRIM8	tripartite motif containing 8	protein coding gene	yes	ENST00000462202.3	1.454	1.070	1.804	0.781(7481)	0.835(586)	0.744(12939)	non tumor-specific	exon_skip	yes
OSMR_LS012	chr5:38904024|38904353:+	OSMR	oncostatin M receptor	protein coding gene	no	ENST00000274276.7	26.776	14.780	13.770	0.866(8297)	0.963(676)	0.904(15715)	non tumor-specific	alt_3prime	yes
NFKB1_LS030	chr4:102612606|102613425:+	NFKB1	nuclear factor kappa B subunit 1	protein coding gene	yes	ENST00000226574.8;ENST00000394820.8;ENST00000505458.5;ENST00000600343.5	99.736	62.467	53.744	0.996(9541)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
CYB561A3_LS015	chr11:61353139|61353784:-	CYB561A3	cytochrome b561 family member A3	protein coding gene	no	ENST00000294072.8;ENST00000426130.6;ENST00000540317.5;ENST00000447532.6;ENST00000546151.5;ENST00000536915.5;ENST00000540139.5;ENST00000542361.5;ENST00000537364.5;ENST00000294072.8;ENST00000426130.6;ENST00000540317.5;ENST00000447532.6;ENST00000546151.5;ENST00000536915.5;ENST00000540139.5;ENST00000542361.5;ENST00000537364.5	44.020	29.333	33.595	0.995(9529)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LHPP_LS002	chr10:124484326|124488422:+	LHPP	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein coding gene	no	ENST00000392757.8;ENST00000368842.9;ENST00000368839.1	43.944	45.440	35.447	0.992(9509)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
GLUD1_LS003	chr10:87057782|87059150:-	GLUD1	glutamate dehydrogenase 1	protein coding gene	no	ENST00000277865.4;ENST00000487058.1	284.661	288.897	151.338	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
WASHC3_LS018	chr12:102050287|102061248:-	WASHC3	WASH complex subunit 3	protein coding gene	no	.;.	7.616	1.913	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RAB11FIP2_LS006	chr10:118039440|118040123:-	RAB11FIP2	RAB11 family interacting protein 2	protein coding gene	no	ENST00000355624.7;ENST00000369199.5;ENST00000483413.1	9.226	11.319	7.181	0.879(8423)	0.947(665)	0.942(16366)	non tumor-specific	alt_3prime	yes
UN_FCGBP_LS0090	chr19:39876744|39892947:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	3.829	4.513	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
EIF4E2_LS008	chr2:232558018|232564247:+	EIF4E2	eukaryotic translation initiation factor 4E family member 2	protein coding gene	no	ENST00000258416.7;ENST00000409514.5;ENST00000409098.5;ENST00000409495.5;ENST00000454501.1	126.330	67.288	60.778	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LINC01515_LS019	chr10:65615761|65680960:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000433152.8	0.362	0.303	0.753	0.096(921)	0.114(80)	0.119(2060)	non tumor-specific	nAS	yes
AL390964.1_LS002	chr13:54952393|54979310:+	AL390964.1	-	lncRNA gene	no	ENST00000622486.4;ENST00000616396.1	1.742	0.000	0.786	0.001(8)	0(0)	0.004(74)	non tumor-specific	nAS	yes
DEAF1_LS004	chr11:651407|653962:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	ENST00000527170.5	0.105	0.312	1.469	0.684(6549)	0.687(482)	0.766(13323)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PI4KAP2_LS015	chr22:21480002|21483020:-	PI4KAP2	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudogene	no	ENST00000486209.5;ENST00000463608.5;ENST00000462560.6;ENST00000450651.5;ENST00000360806.9;ENST00000494740.5;ENST00000480319.5;ENST00000467443.5;ENST00000479693.1	22.211	12.530	58.446	0.974(9335)	0.962(675)	0.978(16995)	non tumor-specific	nAS	yes
CDK16_LS026	chrX:47227099|47227160:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	ENST00000523344.5	0.090	0.054	2.069	0.866(8295)	0.846(594)	0.884(15361)	non tumor-specific	alt_3prime;alt_5prime	yes
PCBP3_LS018	chr21:45751086|45751466:+	PCBP3	poly(rC) binding protein 3	protein coding gene	no	ENST00000610200.1;ENST00000423045.2	0.040	0.000	0.933	0(1)	0(0)	0.013(226)	non tumor-specific	nAS	yes
UN_AC112481.1_UP_LS0004	chr12:90314502|90314656:+	AC112481.1	-	lncRNA gene	no	.	3.142	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF11_LS0015	chr1:51236879|51265877:+	RNF11	ring finger protein 11	protein coding gene	no	.	0.974	0.338	0.000	0.004(39)	0.019(13)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SYNPO_LS0153	chr5:150650329|150656404:+	SYNPO	synaptopodin	protein coding gene	no	.	8.728	2.926	0.000	0.008(76)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CCDC88C_LS0024	chr14:91282283|91288270:+	CCDC88C	coiled-coil domain containing 88C	protein coding gene	no	.	1.852	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF1_LS0014	chr9:131577157|131577333:+	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	2.358	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC063980.1_LS001	chr5:136376606|136396888:-	AC063980.1	-	lncRNA gene	no	ENST00000514282.1	0.058	0.031	0.681	0.002(22)	0.001(1)	0.001(21)	non tumor-specific	nAS	yes
MVK_LS013	chr12:109579946|109581395:+	MVK	mevalonate kinase	protein coding gene	no	ENST00000539335.5;ENST00000546277.5;ENST00000228510.7;ENST00000537237.5;ENST00000539575.4	13.690	11.168	14.026	0.988(9465)	0.996(699)	0.976(16972)	non tumor-specific	exon_skip	yes
AP5S1_LS005	chr20:3822293|3823875:+	AP5S1	adaptor related protein complex 5 subunit sigma 1	protein coding gene	no	ENST00000379573.6	0.578	0.739	1.045	0.83(7952)	0.868(609)	0.617(10721)	non tumor-specific	alt_3prime	yes
BCLAF3_LS017	chrX:19937532|19950753:-	BCLAF3	BCLAF1 and THRAP3 family member 3	protein coding gene	no	ENST00000379687.7;ENST00000472158.5;ENST00000379682.8;ENST00000340625.3	7.228	4.723	6.605	0.856(8206)	0.906(636)	0.966(16792)	non tumor-specific	exon_skip	yes
UN_POLR1A_LS0048	chr2:86038857|86039342:-	POLR1A	RNA polymerase I subunit A	protein coding gene	no	.	2.518	0.520	0.000	0.025(235)	0.027(19)	0(0)	non tumor-specific	alt_5prime	no
SFTPA2_LS008	chr10:79559005|79559969:-	SFTPA2	surfactant protein A2	protein coding gene	no	.;.	27.516	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TMEM52B_LS0005	chr12:10172416|10175282:+	TMEM52B	transmembrane protein 52B	protein coding gene	no	.	4.155	0.475	0.000	0.019(180)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
SLCO4A1_LS026	chr20:62669078|62685441:+	SLCO4A1	solute carrier organic anion transporter family member 4A1	protein coding gene	no	ENST00000466818.1	0.755	0.344	1.445	0.437(4187)	0.463(325)	0.601(10440)	non tumor-specific	alt_3prime	yes
UNC79_LS055	chr14:93691946|93694335:+	UNC79	unc-79 homolog, NALCN channel complex subunit	protein coding gene	no	ENST00000256339.8;ENST00000555664.5;ENST00000553484.5;ENST00000393151.6;ENST00000621021.1;ENST00000554549.1	5.632	1.063	2.029	0.279(2669)	0.174(122)	0.469(8146)	non tumor-specific	nAS	yes
ARSE_LS015	chrX:2959888|2960378:-	ARSE	arylsulfatase L	protein coding gene	no	ENST00000545496.5;ENST00000496095.1	0.212	1.561	0.921	0.208(1989)	0.252(177)	0.106(1836)	non tumor-specific	exon_skip	yes
WIPI1_LS012	chr17:68434626|68435620:-	WIPI1	WD repeat domain, phosphoinositide interacting 1	protein coding gene	no	ENST00000262139.9;ENST00000589459.5;ENST00000589316.5;ENST00000546360.5;ENST00000591494.5	42.576	29.057	43.776	0.977(9356)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CD3E_LS0007	chr11:118313835|118314472:-	CD3E	CD3e molecule	protein coding gene	no	.	0.648	0.021	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IGLV3-30_UP_LS0002	chr22:22580270|22605142:+	IGLV3-30	immunoglobulin lambda variable 3-30 (pseudogene)	no	no	.	36.204	1.559	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC02351_UP_LS0053	chr15:98407615|98414147:-	LINC02351	long intergenic non-protein coding RNA 2351	lncRNA gene	no	.	2.909	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TENM3_LS0019	chr4:182449448|182600924:+	TENM3	teneurin transmembrane protein 3	protein coding gene	no	.	2.066	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_ZFHX3_LS0078	chr16:72960194|73048247:-	ZFHX3	zinc finger homeobox 3	protein coding gene	yes	.	1.719	0.216	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_MYO1B_LS0020	chr2:191362371|191363704:+	MYO1B	myosin IB	protein coding gene	no	.	9.881	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_MAP7_UP_LS0003	chr6:136792388|136792645:-	MAP7	microtubule associated protein 7	protein coding gene	no	.	1.237	0.768	0.000	0.126(1208)	0.187(131)	0(0)	non tumor-specific	exon_skip	no
UN_AC034102.4_UP_LS0001	chr12:56116131|56119924:-	AC034102.4	-	lncRNA gene	no	.	1.059	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GPM6B_LS020	chrX:13807769|13816844:-	GPM6B	glycoprotein M6B	protein coding gene	yes	ENST00000316715.8;ENST00000355135.6	1.879	2.499	3.341	0.149(1423)	0.444(312)	0.535(9305)	non tumor-specific	exon_skip	yes
NFASC_LS020	chr1:204968982|204970616:+	NFASC	neurofascin	protein coding gene	no	ENST00000404977.6;ENST00000339876.10;ENST00000539706.5;ENST00000360049.8;ENST00000403080.5;ENST00000404076.5;ENST00000514644.5;ENST00000401399.5;ENST00000404907.5;ENST00000513543.5;ENST00000504476.5;ENST00000430393.5;ENST00000367173.7;ENST00000512826.5	5.462	6.655	9.824	0.584(5600)	0.805(565)	0.922(16033)	non tumor-specific	alt_5prime	yes
RNF139-AS1_LS003	chr8:124474194|124474286:-	RNF139-AS1	RNF139 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000519861.1	0.313	0.152	0.713	0.022(213)	0.004(3)	0.122(2128)	non tumor-specific	nAS	yes
UN_PPOX_LS0033	chr1:161172064|161172227:-	PPOX	protoporphyrinogen oxidase	protein coding gene	no	.	15.161	5.784	0.000	0.407(3895)	0.342(240)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PLPPR3_LS004	chr19:814749|814886:-	PLPPR3	phospholipid phosphatase related 3	protein coding gene	no	ENST00000359894.6;ENST00000520876.7;ENST00000517665.2	19.632	12.413	2.883	0.244(2342)	0.259(182)	0.364(6331)	non tumor-specific	nAS	yes
ITGAE_LS020	chr17:3743617|3745764:-	ITGAE	integrin subunit alpha E	protein coding gene	no	ENST00000263087.8	4.868	2.853	1.130	0.341(3265)	0.41(288)	0.303(5259)	non tumor-specific	nAS	yes
ARHGEF39_LS013	chr9:35662741|35662946:-	ARHGEF39	Rho guanine nucleotide exchange factor 39	protein coding gene	no	ENST00000490638.5;ENST00000378387.3	3.901	0.815	1.369	0.714(6845)	0.241(169)	0.528(9186)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RYR1_LS090	chr19:38535392|38535997:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7;ENST00000594335.5;ENST00000601514.5;ENST00000596431.5	3.345	2.751	2.050	0.186(1783)	0.081(57)	0.66(11473)	non tumor-specific	exon_skip	yes
UN_MARCH10_LS0036	chr17:62749956|62750646:+	MARCH10	membrane associated ring-CH-type finger 10	protein coding gene	no	.	2.689	0.742	0.000	0.001(14)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_ZNF473_LS0014	chr19:50042874|50044632:-	ZNF473	zinc finger protein 473	protein coding gene	no	.	6.435	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EVL_LS0073	chr14:100143950|100144043:+	EVL	Enah/Vasp-like	protein coding gene	no	.	14.206	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ABCG1_LS0013	chr21:42291192|42294542:+	ABCG1	ATP binding cassette subfamily G member 1	protein coding gene	no	.	0.220	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	exon_skip	no
THNSL2_LS006	chr2:88170456|88174639:+	THNSL2	threonine synthase like 2	protein coding gene	no	.;.	1.017	0.928	0.000	0.162(1551)	0.244(171)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_EIF3A_LS0045	chr10:119049983|119050521:-	EIF3A	eukaryotic translation initiation factor 6	protein coding gene	no	.	24.679	4.489	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_ZMIZ2_LS0029	chr7:44760573|44761458:-	ZMIZ2	zinc finger MIZ-type containing 2	protein coding gene	no	.	2.834	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GIPC1_LS0119	chr19:14482787|14491656:-	GIPC1	GIPC PDZ domain containing family member 1	protein coding gene	no	.	11.020	4.658	0.000	0.122(1169)	0.147(103)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
KDM4C_LS003	chr9:6793132|6805599:+	KDM4C	lysine demethylase 4C	protein coding gene	yes	ENST00000536108.5;ENST00000438023.5;ENST00000401787.7;ENST00000381306.7;ENST00000381309.7;ENST00000489243.5;ENST00000543771.5	6.045	5.134	11.655	0.934(8948)	0.979(687)	0.973(16919)	non tumor-specific	alt_3prime;exon_skip	yes
MIA2_LS034	chr14:39314799|39315683:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	ENST00000553728.1;ENST00000640607.1;ENST00000341749.7;ENST00000557038.5;ENST00000396165.8;ENST00000396158.6;ENST00000280083.7;ENST00000341502.9;ENST00000556148.5;ENST00000348007.7;ENST00000553352.1	54.574	52.250	23.916	0.985(9436)	0.997(700)	0.979(17013)	non tumor-specific	nAS	yes
SNHG1_LS010	chr11:62853833|62854018:-	SNHG1	small nucleolar RNA host gene 1	lncRNA gene	no	ENST00000539921.5;ENST00000540725.5;ENST00000537925.5;ENST00000537068.5;ENST00000539975.5;ENST00000542112.5;ENST00000541615.5;ENST00000541578.5;ENST00000545688.5;ENST00000544550.5;ENST00000535689.5	63.619	14.592	59.140	0.994(9524)	0.991(696)	0.979(17020)	non tumor-specific	nAS	yes
UN_FBRS_LS0198	chr16:30670273|30670327:-	FBRS	fibrosin	protein coding gene	no	.	3.143	0.374	0.000	0.019(179)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CCM2_LS0016	chr7:45064001|45064465:+	CCM2	CCM2 scaffold protein	protein coding gene	no	.	10.518	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SPTA1_LS013	chr1:158627007|158627625:-	SPTA1	spectrin alpha, erythrocytic 1	protein coding gene	no	ENST00000368147.8;ENST00000643759.1;ENST00000461624.1	2.050	0.172	0.984	0.046(436)	0.021(15)	0.218(3784)	non tumor-specific	nAS	yes
UN_RAPGEF1_LS0117	chr9:131650949|131676557:-	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	3.911	2.286	0.000	0.014(136)	0.027(19)	0(0)	non tumor-specific	nAS	no
MAGED4B_LS020	chrX:52067401|52067486:-	MAGED4B	MAGE family member D4B	protein coding gene	no	ENST00000486010.1	1.410	0.451	0.710	0.528(5054)	0.479(336)	0.013(234)	non tumor-specific	intron_retention	yes
CDON_LS008	chr11:125994389|125994871:-	CDON	cell adhesion associated, oncogene regulated	protein coding gene	yes	ENST00000392693.7;ENST00000531738.5;ENST00000263577.11	6.064	5.262	3.684	0.567(5434)	0.759(533)	0.763(13268)	non tumor-specific	nAS	yes
HCRT_LS001	chr17:42184528|42185345:-	HCRT	hypocretin neuropeptide precursor	protein coding gene	no	ENST00000293330.1	0.214	0.032	0.993	0.039(373)	0.038(27)	0.074(1279)	non tumor-specific	nAS	yes
UN_AC022467.1_UP_LS0003	chr15:48645786|48646104:-	AC022467.1	-	lncRNA gene	no	.	0.659	0.578	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC5_LS0002	chr11:57668240|57672021:+	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	.	5.244	1.859	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_GAPDHP1_LS0020	chrX:39787678|39787892:+	GAPDHP1	glyceraldehyde-3-phosphate dehydrogenase pseudogene 1	pseudogene	no	.	1.091	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00365_LS0006	chr13:30107378|30108769:-	LINC00365	long intergenic non-protein coding RNA 365	lncRNA gene	no	.	1.665	0.757	0.000	0.001(12)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_ACTR1A_LS0027	chr10:102470494|102471273:+	ACTR1A	actin related protein 1A	protein coding gene	no	.	1.802	0.273	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SMG1P5_LS012	chr16:30279073|30279693:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	ENST00000529428.5;ENST00000532983.1	1.363	0.223	0.659	0.531(5090)	0.587(412)	0.034(585)	non tumor-specific	nAS	yes
UN_COQ7_LS0002	chr16:19067737|19068856:+	COQ7	coenzyme Q7, hydroxylase	protein coding gene	no	.	2.566	0.048	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IGHV4-55_LS0002	chr14:106606194|106606318:-	IGHV4-55	immunoglobulin heavy variable 4-55 (pseudogene)	no	no	.	25.908	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WWOX_LS0067	chr16:78608575|78756940:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	2.342	0.624	0.000	0.008(79)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
NNMT_LS005	chr11:114262934|114296428:+	NNMT	nicotinamide N-methyltransferase	protein coding gene	no	ENST00000535401.5;ENST00000535401.5	1.121	2.487	1.677	0.49(4695)	0.738(518)	0.527(9163)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NAPA_LS0053	chr19:47495400|47501457:+	NAPA	napsin A aspartic peptidase	protein coding gene	no	.	0.853	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SEC14L1_LS110	chr17:77215766|77215858:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	5.670	0.298	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PACSIN2_LS013	chr22:42879169|42882184:-	PACSIN2	protein kinase C and casein kinase substrate in neurons 2	protein coding gene	no	ENST00000337959.8;ENST00000263246.7;ENST00000407585.5;ENST00000403744.7;ENST00000402229.5	127.994	109.181	64.894	0.995(9530)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF28_LS0192	chr19:52840291|52840647:+	ZNF28	zinc finger protein 28	protein coding gene	no	.	2.649	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A9_LS0109	chr7:100866260|100866493:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	.	11.188	1.193	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_VCPKMT_LS0002	chr14:50112719|50113387:-	VCPKMT	valosin containing protein lysine methyltransferase	protein coding gene	no	.	1.536	0.519	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
EFEMP2_LS019	chr11:65868421|65868510:-	EFEMP2	EGF containing fibulin extracellular matrix protein 2	protein coding gene	no	ENST00000531972.5;ENST00000526628.5;ENST00000528176.5;ENST00000307998.10;ENST00000530806.5;ENST00000532084.5;ENST00000531005.5	85.488	73.168	124.668	0.991(9490)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
SNX1_LS019	chr15:64130321|64131687:+	SNX1	sorting nexin 1	protein coding gene	no	ENST00000560829.5;ENST00000380285.7;ENST00000261889.9;ENST00000559844.5;ENST00000560260.5;ENST00000561026.5	170.643	114.272	134.237	0.995(9537)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMEM86A_LS0010	chr11:18702116|18702981:+	TMEM86A	transmembrane protein 86A	protein coding gene	no	.	1.664	0.025	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
VSTM2A_LS004	chr7:54546739|54546947:+	VSTM2A	V-set and transmembrane domain containing 2A	protein coding gene	no	ENST00000466888.5	0.570	0.274	1.167	0.071(681)	0.033(23)	0.062(1079)	non tumor-specific	alt_5prime	yes
UN_HLA-B_LS0285	chr6:31272153|31272617:-	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	1.376	62.906	0.000	0.012(114)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_PPIL3_LS0007	chr2:200881300|200881421:-	PPIL3	peptidylprolyl isomerase like 3	protein coding gene	no	.	0.944	0.359	0.000	0.056(537)	0.046(32)	0(0)	non tumor-specific	exon_skip	no
UN_MICAL3_LS0088	chr22:17842011|17864899:-	MICAL3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein coding gene	no	.	2.963	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CYBC1_LS030	chr17:82447621|82449174:-	CYBC1	cytochrome b-245 chaperone 1	protein coding gene	no	ENST00000584408.5;ENST00000583359.1	0.166	0.264	0.911	0.861(8252)	0.868(609)	0.489(8497)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC099342.1_LS002	chr7:20298397|20300059:+	AC099342.1	-	lncRNA gene	no	ENST00000453564.1	0.052	0.000	0.657	0.005(50)	0(0)	0.001(16)	non tumor-specific	nAS	yes
UN_AC244157.2_UP_LS0133	chr22:22881387|22904984:-	AC244157.2	-	pseudogene	no	.	19.325	0.386	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AJ239322.1_UP_LS0001	chr2:131993830|131994409:-	AJ239322.1	-	lncRNA gene	no	.	6.140	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AC009446.1_LS003	chr8:71696033|71702215:+	AC009446.1	-	lncRNA gene	no	ENST00000521131.1	0.564	0.000	0.715	0.002(19)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_AP1B1_LS0017	chr22:29328139|29328241:+	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	1.508	0.382	0.000	0.019(178)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_UROD_LS0014	chr1:45014836|45014915:+	UROD	uroporphyrinogen decarboxylase	protein coding gene	no	.	27.942	3.966	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLMAP_LS026	chr3:57865292|57890041:+	SLMAP	sarcolemma associated protein	protein coding gene	no	ENST00000383718.7;ENST00000475055.1;ENST00000383718.7;ENST00000475055.1	0.178	0.112	1.290	0.721(6911)	0.832(584)	0.629(10927)	non tumor-specific	alt_3prime;exon_skip	yes
NXPE1_LS012	chr11:114551211|114551383:-	NXPE1	neurexophilin and PC-esterase domain family member 1	protein coding gene	no	ENST00000534921.2;ENST00000536312.5;ENST00000539878.5	1.171	4.825	2.796	0.037(359)	0.068(48)	0.038(659)	non tumor-specific	exon_skip	yes
RGS14_LS001	chr5:177358069|177365963:+	RGS14	regulator of G protein signaling 14	protein coding gene	no	ENST00000408923.7	4.739	2.189	3.012	0.508(4866)	0.517(363)	0.781(13570)	non tumor-specific	nAS	yes
AL109811.1_LS001	chr1:11068713|11070659:+	AL109811.1	-	lncRNA gene	no	ENST00000452378.1	0.215	0.059	0.727	0.083(795)	0.15(105)	0.09(1557)	non tumor-specific	nAS	yes
UN_AC067930.4_UP_LS0004	chr8:143549851|143553130:-	AC067930.4	-	lncRNA gene	no	.	0.721	0.166	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AP003497.2_UP_LS0002	chr11:87359950|87362357:+	AP003497.2	-	lncRNA gene	no	.	2.814	1.184	0.000	0.019(181)	0.026(18)	0(0)	non tumor-specific	nAS	no
LYRM1_LS001	chr16:20900004|20900129:+	LYRM1	LYR motif containing 1	protein coding gene	no	ENST00000564457.1	0.125	0.069	0.658	0.058(559)	0.114(80)	0.015(262)	non tumor-specific	alt_3prime;intron_retention	yes
UN_UVSSA_LS0096	chr4:1394642|1394705:-	UVSSA	UV stimulated scaffold protein A	protein coding gene	no	.	2.264	0.146	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_XRCC5_LS0022	chr2:216135242|216137088:+	XRCC5	X-ray repair cross complementing 5	protein coding gene	yes	.	1.272	5.329	0.000	0.002(15)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_AC004754.1_LS0053	chr16:265128|265192:-	AC004754.1	-	protein coding gene	no	.	3.380	0.828	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SAPCD2_LS0020	chr9:137066374|137069704:-	SAPCD2	suppressor APC domain containing 2	protein coding gene	no	.	1.665	0.589	0.000	0.243(2326)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_PCBP2P3_UP_LS0005	chr5:92560033|92671484:-	PCBP2P3	poly(rC) binding protein 2 pseudogene 3	pseudogene	no	.	2.131	0.265	0.000	0.009(88)	0.003(2)	0(0)	non tumor-specific	nAS	no
CBWD1_LS019	chr9:150725|152034:-	CBWD1	COBW domain containing 1	protein coding gene	no	ENST00000487575.6;ENST00000498044.6	0.040	0.009	0.695	0.175(1678)	0.155(109)	0.093(1610)	non tumor-specific	exon_skip;mutex_exons	yes
CAPZA1_LS004	chr1:112619883|112647210:+	CAPZA1	capping actin protein of muscle Z-line subunit alpha 1	protein coding gene	no	ENST00000263168.3;ENST00000485542.5;ENST00000476936.5;ENST00000263168.3;ENST00000485542.5;ENST00000476936.5	13.729	13.150	33.641	0.985(9441)	0.991(696)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF107_LS011	chr7:64684205|64691248:+	ZNF107	zinc finger protein 107	protein coding gene	no	.;.	1.948	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PPP2R5C_LS030	chr14:101831804|101836169:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	ENST00000554442.5;ENST00000557714.1	0.154	0.158	1.574	0.641(6139)	0.745(523)	0.758(13183)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC01270_LS0027	chr20:50308951|50311033:+	LINC01270	long intergenic non-protein coding RNA 1270	lncRNA gene	no	.	1.072	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
RING1_LS007	chr6:33210130|33211729:+	RING1	ring finger protein 1	protein coding gene	yes	.;.;.	5.606	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RELCH_LS022	chr18:62261658|62263989:+	RELCH	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein coding gene	no	ENST00000644646.1;ENST00000256858.10;ENST00000398130.6;ENST00000587725.5;ENST00000588446.1	15.082	12.217	18.496	0.969(9288)	0.987(693)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
NEK1_LS023	chr4:169555851|169555932:-	NEK1	NIMA related kinase 1	protein coding gene	no	ENST00000439128.6;ENST00000507142.5;ENST00000509912.5	2.186	2.480	3.139	0.714(6837)	0.893(627)	0.915(15907)	non tumor-specific	exon_skip	yes
APLP1_LS016	chr19:35877825|35878082:+	APLP1	amyloid beta precursor like protein 1	protein coding gene	no	ENST00000221891.8;ENST00000590561.5	15.731	13.325	3.036	0.494(4729)	0.459(322)	0.724(12591)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SEC16A_LS0081	chr9:136477684|136482938:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	.	11.424	6.980	0.000	0.303(2903)	0.48(337)	0(0)	non tumor-specific	nAS	no
ZDHHC1_LS013	chr16:67399456|67400957:-	ZDHHC1	zinc finger DHHC-type containing 1	protein coding gene	no	ENST00000565726.2;ENST00000348579.6;ENST00000562122.1	30.394	21.310	24.465	0.963(9227)	0.987(693)	0.951(16529)	non tumor-specific	alt_3prime;exon_skip	yes
MED1_LS025	chr17:39447904|39451038:-	MED1	mediator complex subunit 1	protein coding gene	no	ENST00000394287.7;ENST00000300651.10;ENST00000577831.5;ENST00000581334.1	9.537	5.714	4.984	0.816(7814)	0.917(644)	0.933(16217)	non tumor-specific	exon_skip	yes
UN_DGKD_LS0066	chr2:233463619|233463688:-	DGKD	diacylglycerol kinase delta	protein coding gene	no	.	20.347	0.529	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_VCAN_LS0031	chr5:83572560|83576660:+	VCAN	versican	protein coding gene	no	.	9.764	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC245519.2_UP_LS0003	chr8:2156783|2192935:+	AC245519.2	-	lncRNA gene	no	.	5.039	0.196	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
TSPAN3_LS003	chr15:77052929|77054178:-	TSPAN3	tetraspanin 3	protein coding gene	no	ENST00000267970.8;ENST00000560715.5;ENST00000346495.6;ENST00000424443.7;ENST00000561277.5;ENST00000559494.1;ENST00000558745.5	608.757	412.694	187.143	0.997(9554)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
PRPF4B_LS012	chr6:4056435|4056527:+	PRPF4B	pre-mRNA processing factor 4B	protein coding gene	no	ENST00000463634.6	0.197	0.704	2.055	0.375(3591)	0.305(214)	0.787(13676)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF131_LS016	chr5:43121828|43122039:+	ZNF131	zinc finger protein 131	protein coding gene	no	ENST00000505606.6	0.131	0.143	1.361	0.578(5536)	0.632(444)	0.682(11859)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ARMH3_LS0024	chr10:101871992|101889412:-	ARMH3	armadillo like helical domain containing 3	protein coding gene	no	.	3.527	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AGPS_LS001	chr2:177393049|177420269:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	ENST00000264167.8;ENST00000409888.1	5.712	3.849	6.425	0.92(8818)	0.967(679)	0.96(16694)	non tumor-specific	alt_5prime;exon_skip	yes
NINL_LS018	chr20:25489324|25489875:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5;ENST00000489780.5;ENST00000461642.2	10.522	8.602	9.339	0.868(8319)	0.922(647)	0.933(16218)	non tumor-specific	nAS	yes
USP33_LS001	chr1:77697474|77697863:-	USP33	ubiquitin specific peptidase 33	protein coding gene	yes	ENST00000370794.7;ENST00000481579.5;ENST00000357428.5;ENST00000370793.5	61.496	43.441	41.302	0.977(9365)	0.989(694)	0.979(17015)	non tumor-specific	alt_3prime;intron_retention	yes
PSG4_LS002	chr19:43193816|43194340:-	PSG4	pregnancy specific beta-1-glycoprotein 4	protein coding gene	no	ENST00000597374.5	0.424	0.062	0.640	0.019(183)	0.019(13)	0.019(335)	non tumor-specific	nAS	yes
RIF1_LS017	chr2:151435580|151436827:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000444746.6;ENST00000453091.6;ENST00000428287.6;ENST00000243326.9;ENST00000414861.6;ENST00000430328.6	8.768	4.134	3.649	0.702(6723)	0.822(577)	0.847(14719)	non tumor-specific	alt_5prime;exon_skip	yes
AOX2P_LS028	chr2:200782438|200791583:+	AOX2P	aldehyde oxidase 2, pseudogene	pseudogene	no	ENST00000467645.1	9.478	0.000	0.723	0.015(142)	0(0)	0.088(1529)	non tumor-specific	nAS	yes
DNAH14_LS043	chr1:225144628|225145326:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000430092.5;ENST00000439375.6;ENST00000495456.1	0.452	0.110	1.115	0.196(1881)	0.107(75)	0.388(6749)	non tumor-specific	nAS	yes
DOCK6_LS002	chr19:11199539|11201889:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	ENST00000587734.1	0.330	0.156	0.660	0.674(6461)	0.695(488)	0.013(227)	non tumor-specific	nAS	yes
UN_TIGAR_LS0005	chr12:4321303|4337039:+	TIGAR	TP53 induced glycolysis regulatory phosphatase	protein coding gene	no	.	0.401	0.003	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RAB40C_LS0021	chr16:606419|606486:+	RAB40C	RAB40C, member RAS oncogene family	protein coding gene	no	.	10.026	0.977	0.000	0.011(103)	0.007(5)	0(0)	non tumor-specific	nAS	no
SNX29_LS004	chr16:12003043|12027320:+	SNX29	sorting nexin 29	protein coding gene	no	ENST00000569801.5;ENST00000566228.5;ENST00000564111.5;ENST00000568949.1	6.892	6.649	4.152	0.808(7746)	0.893(627)	0.938(16298)	non tumor-specific	exon_skip	yes
UN_BX255925.2_UP_LS0001	chr9:137272615|137278653:+	BX255925.2	-	pseudogene	no	.	1.815	0.043	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL359081.1_LS001	chr1:191859180|191866820:-	AL359081.1	-	lncRNA gene	no	ENST00000432083.1	0.554	0.004	0.901	0.002(16)	0.001(1)	0.001(12)	non tumor-specific	nAS	yes
UN_LINC00963_LS0023	chr9:129496088|129502397:+	LINC00963	long intergenic non-protein coding RNA 963	lncRNA gene	no	.	2.451	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RN7SKP168_UP_LS0017	chr2:17434146|17441515:-	RN7SKP168	RN7SK pseudogene 168	small non-coding RNA gene	no	.	1.328	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SCYL2_LS0003	chr12:100267818|100282943:+	SCYL2	SCY1 like pseudokinase 2	protein coding gene	no	.	0.992	0.433	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CR381670.1_LS005	chr21:8867063|8873017:+	CR381670.1	-	pseudogene	no	ENST00000624291.1	5.608	1.031	3.131	0.051(491)	0.127(89)	0.777(13504)	non tumor-specific	nAS	yes
SEC14L1_LS252	chr17:77215909|77215959:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	5.200	0.158	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_FGF13_LS0026	chrX:139203075|139203416:-	FGF13	fibroblast growth factor 13	protein coding gene	no	.	2.221	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ABHD3_LS0007	chr18:21663899|21702359:-	ABHD3	abhydrolase domain containing 3, phospholipase	protein coding gene	no	.	2.158	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CD5L_LS002	chr1:157833512|157834407:-	CD5L	CD5 molecule like	protein coding gene	no	ENST00000368174.4	8.521	55.864	1.117	0.121(1163)	0.205(144)	0.189(3290)	non tumor-specific	nAS	yes
UN_AC011676.4_UP_LS0003	chr8:141309805|141309966:+	AC011676.4	-	lncRNA gene	no	.	2.024	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PAF1_LS014	chr19:39389546|39389640:-	PAF1	PAF1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000221265.7;ENST00000595564.5	108.195	70.460	75.167	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ALDH9A1_LS0021	chr1:165670265|165679442:-	ALDH9A1	aldehyde dehydrogenase 9 family member A1	protein coding gene	no	.	0.974	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EGFLAM_LS0024	chr5:38445451|38445679:+	EGFLAM	EGF like, fibronectin type III and laminin G domains	protein coding gene	no	.	0.391	0.188	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LTB4R2_LS0001	chr14:24305867|24306382:+	LTB4R2	leukotriene B4 receptor 2	protein coding gene	no	.	6.077	0.154	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
SIAH1_LS004	chr16:48362430|48385204:-	SIAH1	siah E3 ubiquitin protein ligase 1	protein coding gene	yes	ENST00000394725.2	8.103	4.667	11.679	0.911(8729)	0.917(644)	0.974(16927)	non tumor-specific	alt_5prime	yes
UN_PSPH_LS0005	chr7:56011869|56013259:-	PSPH	phosphoserine phosphatase	protein coding gene	no	.	10.264	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MATN3_LS003	chr2:19997259|20000441:-	MATN3	matrilin 3	protein coding gene	no	ENST00000407540.7;ENST00000421259.2	9.520	9.363	2.988	0.618(5920)	0.604(424)	0.753(13094)	non tumor-specific	nAS	yes
USH2A_LS014	chr1:215743335|215758595:-	USH2A	usherin	protein coding gene	no	ENST00000307340.7	9.536	0.000	0.738	0.004(38)	0(0)	0.024(409)	non tumor-specific	nAS	yes
MED12L_LS018	chr3:151193666|151336507:+	MED12L	mediator complex subunit 12L	protein coding gene	no	ENST00000480026.1	0.151	0.006	0.726	0.024(229)	0.004(3)	0.023(399)	non tumor-specific	nAS	yes
SCLY_LS006	chr2:238064469|238073783:+	SCLY	selenocysteine lyase	protein coding gene	no	ENST00000423324.5	0.047	0.035	0.728	0.197(1892)	0.13(91)	0.216(3755)	non tumor-specific	exon_skip	yes
UN_ASNS_LS0006	chr7:97854680|97856690:-	ASNS	asparagine synthetase (glutamine-hydrolyzing)	protein coding gene	no	.	8.992	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_OBSCN_LS0068	chr1:228307082|228307259:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	0.604	0.109	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CDA_LS009	chr1:20605039|20618452:+	CDA	cytidine deaminase	protein coding gene	no	ENST00000461985.1;ENST00000461985.1	9.430	8.495	2.215	0.746(7143)	0.759(533)	0.723(12562)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02411_UP_LS0010	chr12:127721599|127723506:-	LINC02411	long intergenic non-protein coding RNA 2411	lncRNA gene	no	.	6.135	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
FAM184B_LS017	chr4:17709644|17781159:-	FAM184B	family with sequence similarity 184 member B	protein coding gene	no	ENST00000265018.3	2.154	0.647	1.514	0.098(938)	0.161(113)	0.163(2828)	non tumor-specific	nAS	yes
UN_LRRC47_LS0016	chr1:3780873|3781114:+	LRRC47	leucine rich repeat containing 47	protein coding gene	no	.	2.144	0.827	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF10_LS006	chr12:120539441|120560800:+	RNF10	ring finger protein 10	protein coding gene	no	ENST00000542438.1	0.032	0.022	0.637	0.246(2358)	0.234(164)	0.048(828)	non tumor-specific	nAS	yes
TXNL1_LS030	chr18:56639039|56647449:-	TXNL1	thioredoxin like 1	protein coding gene	no	ENST00000589329.5	0.244	0.636	0.771	0.182(1742)	0.226(159)	0.272(4731)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC00448_LS001	chr13:62732195|62732294:-	LINC00448	long intergenic non-protein coding RNA 448	lncRNA gene	no	ENST00000438352.1	0.408	0.026	0.669	0.004(34)	0.003(2)	0.005(80)	non tumor-specific	nAS	yes
ACTN1_LS038	chr14:68925672|68977378:-	ACTN1	actinin alpha 1	protein coding gene	no	ENST00000376839.7	0.003	0.014	0.674	0.017(166)	0.028(20)	0.115(2005)	non tumor-specific	alt_5prime	yes
DMTF1_LS067	chr7:87188301|87190945:+	DMTF1	cyclin D binding myb like transcription factor 1	protein coding gene	yes	ENST00000331242.11;ENST00000447863.5;ENST00000579677.5;ENST00000425406.5;ENST00000547146.6;ENST00000579850.5;ENST00000432937.6;ENST00000394703.9;ENST00000412139.6;ENST00000480982.5;ENST00000580803.1	30.470	14.033	73.159	0.977(9363)	0.983(690)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC002481_LS002	chr4:6689459|6690299:-	LINC002481	long intergenic non-protein coding RNA 2481	lncRNA gene	no	ENST00000499502.2	0.584	0.180	0.741	0.03(287)	0.037(26)	0.026(456)	non tumor-specific	nAS	yes
UN_GSTM2_LS0135	chr1:109675142|109693386:-	GSTM2	glutathione S-transferase mu 2	protein coding gene	no	.	8.683	0.361	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DIAPH1_LS0066	chr5:141516257|141516393:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	2.669	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ELMO3_LS026	chr16:67202790|67202892:+	ELMO3	engulfment and cell motility 3	protein coding gene	no	ENST00000360833.5;ENST00000393997.6;ENST00000477898.5	60.793	39.551	7.119	0.836(8013)	0.946(664)	0.95(16516)	non tumor-specific	exon_skip;intron_retention	yes
AL589935.1_LS026	chr6:71310642|71314707:-	AL589935.1	-	lncRNA gene	no	ENST00000585945.5	0.006	0.000	0.630	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
TANK_LS056	chr2:161231551|161232733:+	TANK	TRAF family member associated NFKB activator	protein coding gene	yes	ENST00000405852.5	0.145	0.444	0.624	0.029(278)	0.037(26)	0.037(648)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CR392039.5_UP_LS0002	chr21:8987669|8988252:+	CR392039.5	-	pseudogene	no	.	38.686	3.265	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RFXANK_LS0005	chr19:19193099|19193925:+	RFXANK	regulatory factor X associated ankyrin containing protein	protein coding gene	no	.	24.404	4.285	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
SLC12A9_LS016	chr7:100853446|100854156:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	ENST00000434158.1	0.149	0.076	0.686	0.337(3232)	0.302(212)	0.149(2585)	non tumor-specific	nAS	yes
UN_AKR1C8P_LS0002	chr10:5160370|5160812:-	AKR1C8P	aldo-keto reductase family 1 member C8, pseudogene	protein coding gene	no	.	2.108	0.648	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PBX2_LS0036	chr6:32189738|32190082:-	PBX2	PBX homeobox 2 pseudogene 1	protein coding gene	yes	.	14.116	0.103	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KIAA0319L_LS0012	chr1:35434650|35434698:+	KIAA0319L	KIAA0319 like	protein coding gene	no	.	2.492	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0151	chr14:106518701|106592796:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	7.236	1.166	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00598_LS034	chr13:40480074|40480236:-	LINC00598	long intergenic non-protein coding RNA 598	lncRNA gene	no	ENST00000637124.1	2.785	0.000	0.628	0(2)	0(0)	0.003(44)	non tumor-specific	nAS	yes
SPTB_LS022	chr14:64784393|64785537:-	SPTB	spectrin beta, erythrocytic	protein coding gene	no	ENST00000556626.5;ENST00000644917.1;ENST00000389722.7;ENST00000389721.10;ENST00000389720.4	4.947	2.835	3.392	0.182(1742)	0.313(220)	0.753(13081)	non tumor-specific	nAS	yes
UN_NPAS4_UP_LS0004	chr11:66416939|66417256:+	NPAS4	neuronal PAS domain protein 4	protein coding gene	no	.	2.162	0.317	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NORAD_LS0089	chr20:36048854|36049450:-	NORAD	non-coding RNA activated by DNA damage	lncRNA gene	no	.	45.649	4.317	0.000	0.016(154)	0.006(4)	0(0)	non tumor-specific	nAS	no
SERPINB6_LS035	chr6:2962029|2971533:-	SERPINB6	serpin family B member 6	protein coding gene	no	ENST00000644388.1	6.707	1.055	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
RBMX_LS014	chrX:136876655|136879017:-	RBMX	RNA binding motif protein X-linked	protein coding gene	yes	ENST00000568578.5;ENST00000464781.5	0.706	0.605	1.460	0.744(7127)	0.739(519)	0.715(12427)	non tumor-specific	exon_skip	yes
UN_NLRP1_LS0086	chr17:5586368|5619331:-	NLRP1	NLR family pyrin domain containing 1	protein coding gene	no	.	5.851	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	exon_skip	no
DAPP1_LS010	chr4:99863855|99866034:+	DAPP1	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein coding gene	no	ENST00000296414.11;ENST00000512369.1;ENST00000296414.11;ENST00000512369.1	11.861	8.118	2.234	0.681(6522)	0.746(524)	0.537(9342)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRBA_LS0009	chr4:150315623|150316355:-	LRBA	LPS responsive beige-like anchor protein	protein coding gene	no	.	4.726	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZBTB7B_LS0071	chr1:155015326|155015630:+	ZBTB7B	zinc finger and BTB domain containing 7B	protein coding gene	no	.	3.033	0.333	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ZNF529-AS1_LS007	chr19:36593931|36594442:+	ZNF529-AS1	ZNF529 antisense RNA 1	lncRNA gene	no	ENST00000592880.6	0.811	0.454	1.923	0.629(6026)	0.614(431)	0.751(13053)	non tumor-specific	nAS	yes
UN_SERINC2_LS0011	chr1:31421679|31434612:-	SERINC2	serine incorporator 2	protein coding gene	no	.	6.215	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC016705.2_UP_LS0001	chr15:80403585|80403709:-	AC016705.2	-	lncRNA gene	no	.	2.748	0.815	0.000	0.108(1031)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_AC025283.3_LS0001	chr16:3365182|3395501:+	AC025283.3	-	protein coding gene	no	.	3.173	0.320	0.000	0.011(109)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
SLC10A4_LS002	chr4:48485142|48488427:+	SLC10A4	solute carrier family 10 member 4	protein coding gene	no	ENST00000273861.4	8.556	1.510	1.530	0.341(3270)	0.259(182)	0.559(9720)	non tumor-specific	nAS	yes
RNFT1_LS005	chr17:59958444|59958624:-	RNFT1	ring finger protein, transmembrane 1	protein coding gene	no	ENST00000484257.1	1.211	0.413	0.695	0.427(4087)	0.429(301)	0.171(2977)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PKN3_LS0006	chr9:128702939|128705101:+	PKN3	protein kinase N3	protein coding gene	no	.	0.594	0.086	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MUC20-OT1_LS103	chr3:195718196|195733150:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	ENST00000629721.2;ENST00000628125.2	0.090	0.034	0.705	0.133(1279)	0.165(116)	0.024(421)	non tumor-specific	nAS	yes
RAB27A_LS011	chr15:55234956|55270165:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	ENST00000396307.6;ENST00000336787.5;ENST00000569493.5;ENST00000567380.5	22.928	18.112	15.123	0.977(9356)	0.996(699)	0.964(16761)	non tumor-specific	exon_skip	yes
UN_TUBB4B_LS0149	chr9:137243400|137243615:-	TUBB4B	tubulin beta 4B class IVb	protein coding gene	no	.	2.713	0.794	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC006272.1_LS001	chr19:51839879|51840503:-	AC006272.1	-	lncRNA gene	no	ENST00000596964.1	0.117	0.026	0.682	0.043(415)	0.027(19)	0.039(672)	non tumor-specific	nAS	yes
AC026250.1_LS002	chr11:9757843|9759429:-	AC026250.1	-	lncRNA gene	no	ENST00000500698.1	0.207	0.026	0.680	0.118(1128)	0.047(33)	0.056(982)	non tumor-specific	nAS	yes
PDS5A_LS023	chr4:39879833|39890249:-	PDS5A	PDS5 cohesin associated factor A	protein coding gene	no	ENST00000303538.12	50.640	32.937	19.046	0.922(8829)	0.977(686)	0.975(16947)	non tumor-specific	exon_skip	yes
UN_LCOR_LS0046	chr10:96941303|96941507:-	LCOR	ligand dependent nuclear receptor corepressor	protein coding gene	no	.	1.340	0.341	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
HSPA9_LS010	chr5:138557986|138558553:-	HSPA9	heat shock protein family A (Hsp70) member 9	protein coding gene	no	ENST00000649126.1;ENST00000649578.1;ENST00000297185.8;ENST00000512328.1	322.409	194.323	246.358	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
TNK1_LS007	chr17:7383616|7383709:+	TNK1	tyrosine kinase non receptor 1	protein coding gene	yes	ENST00000570896.5;ENST00000576812.5;ENST00000576207.2	6.866	5.686	5.298	0.768(7361)	0.927(651)	0.793(13779)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CROCC2_LS034	chr2:240991278|240993066:+	CROCC2	ciliary rootlet coiled-coil, rootletin family member 2	protein coding gene	no	ENST00000443866.2	2.154	0.000	0.860	0(3)	0(0)	0.002(42)	non tumor-specific	nAS	yes
UN_STAU1_LS0019	chr20:49114564|49114791:+	STAU1	staufen double-stranded RNA binding protein 1	protein coding gene	no	.	1.716	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC9_LS019	chr19:47271649|47272069:+	CCDC9	coiled-coil domain containing 9	protein coding gene	no	ENST00000643617.1	44.268	32.279	0.000	0.946(9065)	0.979(687)	0(0)	non tumor-specific	nAS	yes
AL163952.1_LS005	chr14:55962087|55962172:+	AL163952.1	-	lncRNA gene	no	ENST00000612704.1	2.590	0.019	0.906	0.016(152)	0.001(1)	0.199(3459)	non tumor-specific	nAS	yes
DNAJC2_LS009	chr7:103319844|103321932:-	DNAJC2	DnaJ heat shock protein family (Hsp40) member C2	protein coding gene	no	ENST00000475065.5;ENST00000379263.7;ENST00000464253.5	85.705	30.733	37.199	0.994(9521)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
USP16_LS026	chr21:29048855|29050092:+	USP16	ubiquitin specific peptidase 21	protein coding gene	no	ENST00000399975.7;ENST00000399976.6;ENST00000334352.8;ENST00000474835.5	89.862	57.755	60.187	0.993(9514)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
MPZ_LS007	chr1:161307424|161309839:-	MPZ	myelin protein zero	protein coding gene	no	ENST00000463290.5;ENST00000533357.4	3.496	2.722	4.423	0.202(1937)	0.554(389)	0.746(12964)	non tumor-specific	nAS	yes
DNM3_LS020	chr1:172308839|172323329:+	DNM3	dynamin 3	protein coding gene	no	ENST00000627582.2	1.081	3.678	2.845	0.058(555)	0.036(25)	0.181(3138)	non tumor-specific	exon_skip	yes
UN_CLEC12A_LS0014	chr12:9953555|9953683:-	CLEC12A	C-type lectin domain family 12 member A	protein coding gene	no	.	3.001	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPRL3_LS0045	chr16:130591|137286:-	NPRL3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	.	1.071	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SULT1A1_LS024	chr16:28608859|28609931:-	SULT1A1	sulfotransferase family 1A member 1	protein coding gene	no	ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1;ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1;ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1	26.381	43.649	14.064	0.968(9273)	0.987(693)	0.958(16654)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TTLL5_LS004	chr14:75661026|75663055:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000555290.5	0.017	0.029	0.652	0.605(5792)	0.678(476)	0.057(999)	non tumor-specific	nAS	yes
ACSBG1_LS013	chr15:78182785|78234371:-	ACSBG1	acyl-CoA synthetase bubblegum family member 1	protein coding gene	no	ENST00000560124.5	0.064	0.018	1.022	0.036(343)	0.003(2)	0.031(544)	non tumor-specific	nAS	yes
UN_SEH1L_LS0018	chr18:12984190|12985307:+	SEH1L	SEH1 like nucleoporin	protein coding gene	no	.	8.833	2.102	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ANLN_LS036	chr7:36443862|36449665:+	ANLN	anillin actin binding protein	protein coding gene	no	ENST00000265748.6;ENST00000396068.6;ENST00000428612.5;ENST00000457743.1	29.463	5.431	4.065	0.91(8719)	0.533(374)	0.795(13821)	non tumor-specific	exon_skip	yes
UN_ITGB5_LS0015	chr3:124763453|124763497:+	ITGB5	integrin subunit beta 5	protein coding gene	no	.	4.291	0.427	0.000	0.009(91)	0.004(3)	0(0)	non tumor-specific	nAS	no
ABCC12_LS013	chr16:48086819|48087940:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	ENST00000529504.5	4.492	0.626	1.188	0.008(78)	0.004(3)	0.042(727)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SPATA8_LS002	chr15:96783744|96784153:+	SPATA8	spermatogenesis associated serine rich 1	protein coding gene	no	ENST00000649986.1;ENST00000328504.4	0.049	0.001	0.686	0.013(123)	0.007(5)	0.051(885)	non tumor-specific	alt_5prime;intron_retention	yes
ACACB_LS036	chr12:109235647|109237165:+	ACACB	acetyl-CoA carboxylase beta	protein coding gene	no	ENST00000338432.11;ENST00000377854.9;ENST00000377848.7;ENST00000538526.5	7.627	14.366	18.368	0.72(6898)	0.966(678)	0.963(16742)	non tumor-specific	nAS	yes
UN_EFCAB12_LS0014	chr3:129414459|129415245:-	EFCAB12	EF-hand calcium binding domain 12	protein coding gene	no	.	0.633	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SERBP1_LS013	chr1:67426285|67429988:-	SERBP1	SERPINE1 mRNA binding protein 1	protein coding gene	no	ENST00000370994.8;ENST00000370995.6;ENST00000361219.10;ENST00000370990.5	295.437	161.372	157.048	0.965(9246)	0.966(678)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_DCP2_LS0017	chr5:113001674|113010756:+	DCP2	decapping mRNA 2	protein coding gene	no	.	1.092	0.107	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CLUHP1_UP_LS0005	chrY:17689313|17696111:-	CLUHP1	clustered mitochondria homolog pseudogene 1	pseudogene	no	.	15.361	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NR2F6_LS002	chr19:17236065|17240671:-	NR2F6	nuclear receptor subfamily 2 group F member 6	protein coding gene	no	ENST00000291442.3;ENST00000596878.1	66.128	39.536	34.398	0.995(9529)	0.997(700)	0.968(16832)	non tumor-specific	nAS	yes
AC120042.1_LS001	chr8:63013094|63014159:+	AC120042.1	-	lncRNA gene	no	ENST00000524309.1	0.170	0.045	1.153	0.012(118)	0.043(30)	0.01(167)	non tumor-specific	nAS	yes
CFTR_LS019	chr7:117548823|117559464:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000003084.10;ENST00000426809.5	17.029	17.323	1.725	0.216(2072)	0.439(308)	0.219(3806)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNF123_UP_LS0001	chr3:49673257|49674022:+	RNF123	ring finger protein 123	protein coding gene	no	.	0.938	0.297	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC087855.2_LS001	chr8:34175013|34184487:+	AC087855.2	-	lncRNA gene	no	ENST00000518217.1	0.748	0.220	0.796	0.041(389)	0.044(31)	0.034(598)	non tumor-specific	nAS	yes
UN_PIM3_LS0079	chr22:49963347|49963421:-	PIM3	Pim-3 proto-oncogene, serine/threonine kinase	protein coding gene	yes	.	5.631	0.204	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CAPN15_LS0092	chr16:551070|551251:+	CAPN15	calpain 15	protein coding gene	no	.	2.165	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
PTPRZ1_LS017	chr7:122012972|122019124:+	PTPRZ1	protein tyrosine phosphatase receptor type Z1	protein coding gene	no	.;.	9.577	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AL137785.1_LS0001	chr14:89013559|89024159:+	AL137785.1	-	lncRNA gene	no	.	3.289	0.204	0.000	0.013(125)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM23_LS022	chr14:22906368|22911328:-	RBM23	RNA binding motif protein 23	protein coding gene	no	ENST00000542016.6;ENST00000557227.5;ENST00000553902.5	0.011	0.015	1.666	0.806(7722)	0.877(616)	0.798(13867)	non tumor-specific	exon_skip	yes
UN_DEFB135_UP_LS0005	chr8:11838573|11839313:+	DEFB135	defensin beta 135	protein coding gene	no	.	4.876	0.350	0.000	0.018(168)	0.009(6)	0(0)	non tumor-specific	nAS	no
MFAP4_LS005	chr17:19386464|19386760:-	MFAP4	microfibril associated protein 4	protein coding gene	no	ENST00000497081.6;ENST00000395592.6;ENST00000299610.4;ENST00000571210.1	69.199	196.885	120.917	0.92(8815)	0.996(699)	0.96(16680)	non tumor-specific	alt_3prime;exon_skip	yes
NXF1_LS013	chr11:62797238|62797318:-	NXF1	nuclear RNA export factor 1	protein coding gene	no	ENST00000531709.6;ENST00000294172.6;ENST00000532297.5;ENST00000530875.5;ENST00000531872.5;ENST00000531579.5	136.147	73.992	171.094	0.993(9510)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
AC011586.2_LS011	chr8:16844255|16914918:-	AC011586.2	-	lncRNA gene	no	ENST00000521411.2	1.038	0.000	0.680	0(4)	0(0)	0.001(24)	non tumor-specific	nAS	yes
UN_ZNF432_LS0036	chr19:52059346|52064494:-	ZNF432	zinc finger protein 432	protein coding gene	no	.	2.474	0.130	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
MASP1_LS031	chr3:187291488|187291628:-	MASP1	mannan binding lectin serine peptidase 1	protein coding gene	no	ENST00000425937.1	0.073	0.056	0.685	0.079(761)	0.071(50)	0.063(1095)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC00511_LS025	chr17:72421066|72421172:-	LINC00511	long intergenic non-protein coding RNA 511	lncRNA gene	no	ENST00000650313.1	1.601	0.022	0.000	0.016(157)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_PHACTR4_LS0009	chr1:28371101|28407410:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	1.412	0.146	0.000	0.008(81)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_TENM2_LS0036	chr5:167820675|167821204:+	TENM2	teneurin transmembrane protein 2	protein coding gene	no	.	2.444	0.385	0.000	0.055(524)	0.053(37)	0(0)	non tumor-specific	exon_skip	no
AJAP1_LS001	chr1:4655454|4711900:+	AJAP1	adherens junctions associated protein 1	protein coding gene	yes	ENST00000378190.7;ENST00000378191.4	0.899	0.650	1.279	0.266(2547)	0.375(263)	0.458(7966)	non tumor-specific	exon_skip	yes
NR1H3_LS051	chr11:47261449|47261547:+	NR1H3	nuclear receptor subfamily 1 group H member 3	protein coding gene	no	ENST00000527464.5;ENST00000616973.4;ENST00000529540.5;ENST00000395397.7;ENST00000481020.5;ENST00000481889.6;ENST00000441012.6;ENST00000467728.5	20.032	14.260	30.539	0.984(9423)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FAM99B_LS002	chr11:1684302|1685438:-	FAM99B	family with sequence similarity 99 member B	lncRNA gene	no	ENST00000382166.2	2.968	5.642	11.969	0.016(154)	0.063(44)	0.017(291)	non tumor-specific	nAS	yes
UN_IGF2_LS0181	chr11:2130177|2130220:-	IGF2	insulin like growth factor 2	protein coding gene	yes	.	1076.318	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HTT_LS044	chr4:3178446|3180515:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10;ENST00000510626.5;ENST00000513639.5;ENST00000513326.5;ENST00000509043.1	13.245	9.922	9.445	0.936(8966)	0.964(677)	0.963(16741)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FBXO38_LS0020	chr5:148424117|148425579:+	FBXO38	F-box protein 38	protein coding gene	no	.	3.095	1.491	0.000	0.017(163)	0.037(26)	0(0)	non tumor-specific	alt_3prime	no
UN_CADPS_LS0020	chr3:62512768|62513638:-	CADPS	calcium dependent secretion activator	protein coding gene	no	.	3.656	8.624	0.000	0.011(102)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_AC093827.5_LS0004	chr4:86891593|86892194:-	AC093827.5	-	protein coding gene	no	.	0.932	0.173	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_BSPRY_LS0013	chr9:113368842|113369616:+	BSPRY	B-box and SPRY domain containing	protein coding gene	no	.	4.743	0.739	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_PKP4_LS0029	chr2:158621115|158621231:+	PKP4	plakophilin 4	protein coding gene	no	.	13.091	10.926	0.000	0.6(5747)	0.762(535)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_RNA5SP389_UP_LS0178	chr14:106538022|106557155:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	5.271	3.016	0.000	0.061(587)	0.087(61)	0(0)	non tumor-specific	nAS	no
UN_CPNE4_LS0004	chr3:131533572|131688222:+	CPNE4	copine 4	protein coding gene	no	.	2.432	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC7_LS017	chr10:32481782|32491922:+	CCDC7	coiled-coil domain containing 7	protein coding gene	no	ENST00000638889.1	0.561	0.088	0.665	0.01(100)	0.01(7)	0.109(1892)	non tumor-specific	exon_skip	yes
IRX6_LS006	chr16:55327405|55327586:+	IRX6	iroquois homeobox 6	protein coding gene	no	ENST00000290552.7;ENST00000558315.1	6.069	1.867	2.707	0.288(2759)	0.494(347)	0.421(7316)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_FAM193A_LS0048	chr4:2671908|2672121:+	FAM193A	family with sequence similarity 193 member A	protein coding gene	no	.	2.476	0.122	0.000	0.009(91)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF13_LS010	chr3:149813353|149872029:+	RNF13	ring finger protein 13	protein coding gene	no	ENST00000467977.5	0.051	0.056	0.717	0.674(6455)	0.782(549)	0.192(3335)	non tumor-specific	exon_skip;mutex_exons	yes
GOLGA8G_LS009	chr15:28525987|28526255:-	GOLGA8G	golgin A8 family member G	protein coding gene	no	ENST00000382949.7;ENST00000562627.5;ENST00000524859.5;ENST00000569308.5;ENST00000525590.2	0.833	0.000	0.678	0.002(15)	0(0)	0.002(40)	non tumor-specific	nAS	yes
UN_COA1_LS0099	chr7:43650712|43659037:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.	0.624	0.107	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TEPSIN_LS018	chr17:81237459|81238514:-	TEPSIN	TEPSIN adaptor related protein complex 4 accessory protein	protein coding gene	no	ENST00000570854.1;ENST00000570854.1	0.131	0.065	2.928	0.677(6487)	0.644(452)	0.878(15266)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HCN3_UP_LS0019	chr1:155212401|155232794:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	.	9.585	1.143	0.000	0.015(144)	0.006(4)	0(0)	non tumor-specific	nAS	no
ZNF12_LS004	chr7:6697434|6697689:-	ZNF12	zinc finger protein 12	protein coding gene	no	ENST00000394917.3	1.198	0.627	0.922	0.492(4716)	0.568(399)	0.49(8520)	non tumor-specific	alt_5prime	yes
AC114808.2_LS002	chr2:1159419|1160147:-	AC114808.2	-	lncRNA gene	no	ENST00000428335.1	0.000	1.301	0.643	0(0)	0.001(1)	0.003(45)	non tumor-specific	nAS	yes
UN_CASP8_LS0038	chr2:201276968|201279216:+	CASP8	caspase 8	protein coding gene	yes	.	3.111	0.384	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AC093523.1_LS0003	chr5:68944036|68960540:-	AC093523.1	-	lncRNA gene	no	.	1.307	0.481	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	nAS	no
PIH1D1_LS005	chr19:49446694|49447024:-	PIH1D1	PIH1 domain containing 1	protein coding gene	no	ENST00000595633.5;ENST00000596916.5;ENST00000594845.5;ENST00000593629.5;ENST00000598889.5;ENST00000596651.5;ENST00000262265.9;ENST00000596049.5;ENST00000601807.5	96.171	51.916	97.643	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CD180_LS001	chr5:67184585|67185851:-	CD180	CD180 molecule	protein coding gene	no	ENST00000256447.5;ENST00000515027.1	5.453	1.821	1.376	0.701(6712)	0.749(526)	0.427(7417)	non tumor-specific	intron_retention	yes
SHC3_LS009	chr9:89071252|89075109:-	SHC3	SHC adaptor protein 3	protein coding gene	no	ENST00000375835.8	4.597	3.345	2.464	0.292(2795)	0.393(276)	0.682(11858)	non tumor-specific	exon_skip	yes
UN_ANO8_LS0024	chr19:17328264|17328540:-	ANO8	anoctamin 8	protein coding gene	no	.	2.125	0.955	0.000	0.341(3264)	0.155(109)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
CUL2_LS027	chr10:35071339|35090430:-	CUL2	cullin 2	protein coding gene	yes	ENST00000374751.7;ENST00000626172.2	5.923	4.025	3.845	0.906(8677)	0.954(670)	0.928(16126)	non tumor-specific	nAS	yes
PRR12_LS005	chr19:49599938|49601491:+	PRR12	proline rich 12	protein coding gene	no	ENST00000418929.6;ENST00000615927.1	29.813	14.867	14.632	0.977(9365)	0.99(695)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NACAD_LS0023	chr7:45084035|45084276:+	NACAD	NAC alpha domain containing	protein coding gene	no	.	3.799	4.057	0.000	0.011(103)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM49B_LS043	chr8:129904585|129912470:-	FAM49B	CYFIP related Rac1 interactor B	protein coding gene	no	ENST00000519142.5;ENST00000522702.5;ENST00000521223.5	0.039	0.032	0.952	0.492(4710)	0.54(379)	0.368(6403)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RAB5B_LS0017	chr12:55981015|55986869:+	RAB5B	RAB5B, member RAS oncogene family	protein coding gene	no	.	0.932	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SLC12A5_LS022	chr20:46041540|46043153:+	SLC12A5	solute carrier family 12 member 5	protein coding gene	yes	ENST00000454036.6;ENST00000616933.4;ENST00000616201.4;ENST00000243964.6	3.082	20.001	6.475	0.041(392)	0.007(5)	0.226(3930)	non tumor-specific	nAS	yes
UN_CST3_LS0148	chr20:23637809|23637873:+	CST3	cystatin C	protein coding gene	no	.	5.177	3.032	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
SEZ6L_LS006	chr22:26306144|26310670:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	ENST00000404234.7;ENST00000529632.6;ENST00000360929.7;ENST00000629590.2;ENST00000248933.10;ENST00000343706.8;ENST00000403121.5;ENST00000402979.1	17.906	4.345	2.803	0.15(1437)	0.057(40)	0.312(5420)	non tumor-specific	nAS	yes
UN_AL121721.1_UP_LS0001	chr20:20360020|20360710:-	AL121721.1	-	lncRNA gene	no	.	2.488	0.398	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMARCA4_LS028	chr19:10996544|11003029:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000344626.9;ENST00000643549.1;ENST00000646693.1;ENST00000642726.1;ENST00000646484.1;ENST00000644737.1;ENST00000642628.1;ENST00000643296.1;ENST00000647230.1;ENST00000646510.1;ENST00000429416.8;ENST00000645460.1;ENST00000541122.6;ENST00000589677.5;ENST00000444061.8;ENST00000590574.6;ENST00000413806.7;ENST00000450717.7;ENST00000591545.6;ENST00000643995.1;ENST00000644327.1;ENST00000644065.1;ENST00000644963.1;ENST00000643208.1;ENST00000642350.1;ENST00000645061.1;ENST00000644290.1;ENST00000647268.1;ENST00000644267.1;ENST00000643857.1;ENST00000646183.1;ENST00000646746.1;ENST00000643534.1	62.136	31.306	32.051	0.992(9508)	0.993(697)	0.979(17014)	non tumor-specific	nAS	yes
UN_DAB2IP_LS0027	chr9:121699458|121742785:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	.	0.649	0.497	0.000	0.028(269)	0.03(21)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC002091.2_UP_LS0023	chr17:8717039|8718411:+	AC002091.2	-	lncRNA gene	no	.	1.328	1.459	0.000	0.001(12)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_NCOA1_LS0042	chr2:24718039|24726589:+	NCOA1	nuclear receptor coactivator 1	protein coding gene	no	.	0.966	1.392	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
PPP6R2_LS023	chr22:50419462|50422254:+	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	ENST00000359139.7;ENST00000612753.4;ENST00000395741.7;ENST00000395744.7;ENST00000216061.9;ENST00000401672.7	60.845	42.986	56.631	0.992(9509)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
AC010333.1_LS001	chr16:12556539|12557319:-	AC010333.1	-	lncRNA gene	no	ENST00000563116.1	0.313	0.024	0.669	0.015(145)	0.028(20)	0.006(106)	non tumor-specific	nAS	yes
UN_AC093843.1_UP_LS0006	chr2:220753768|220774918:+	AC093843.1	-	lncRNA gene	no	.	1.584	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TKT_LS0059	chr3:53232813|53233156:-	TKT	transketolase	protein coding gene	no	.	1.873	1.066	0.000	0.009(88)	0.02(14)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
NSD1_LS016	chr5:177235945|177239756:+	NSD1	nuclear receptor binding SET domain protein 1	protein coding gene	yes	ENST00000375350.3	0.475	0.288	1.867	0.114(1090)	0.155(109)	0.808(14039)	non tumor-specific	alt_3prime;exon_skip	yes
MAN2B1_LS015	chr19:12656687|12656949:-	MAN2B1	mannosidase alpha class 2B member 1	protein coding gene	no	ENST00000456935.6;ENST00000221363.8;ENST00000466794.5;ENST00000595880.5;ENST00000433513.5;ENST00000593686.1;ENST00000495617.1	102.694	53.800	47.676	0.995(9535)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime	yes
UN_AC108099.1_UP_LS0004	chr5:41934308|42039916:+	AC108099.1	-	lncRNA gene	no	.	2.309	0.660	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
STAC_LS011	chr3:36485058|36486134:+	STAC	SH3 and cysteine rich domain	protein coding gene	no	ENST00000273183.7;ENST00000427486.5	2.100	2.304	2.084	0.335(3210)	0.632(444)	0.648(11262)	non tumor-specific	exon_skip	yes
TRIM8_LS010	chr10:102656137|102656270:+	TRIM8	tripartite motif containing 8	protein coding gene	yes	ENST00000643721.1;ENST00000302424.12;ENST00000462202.3;ENST00000645961.1;ENST00000479004.2;ENST00000646349.1;ENST00000487927.6;ENST00000644979.1;ENST00000644572.1;ENST00000646757.1;ENST00000643100.1;ENST00000642304.1	143.683	104.461	126.276	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_SEMA3G_UP_LS0003	chr3:52452513|52455287:-	SEMA3G	semaphorin 3G	protein coding gene	no	.	1.438	0.540	0.000	0.039(377)	0.067(47)	0(0)	non tumor-specific	nAS	no
UN_LINC01093_LS0008	chr4:184898769|184899307:-	LINC01093	long intergenic non-protein coding RNA 1093	lncRNA gene	no	.	1.682	1.769	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PPP2R5C_LS0007	chr14:101762970|101856686:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	.	6.162	0.609	0.000	0.018(174)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
PRAME_LS021	chr22:22557580|22558971:-	PRAME	PRAME nuclear receptor transcriptional regulator	protein coding gene	yes	ENST00000398741.5;ENST00000405655.7;ENST00000420709.5	3.915	0.109	0.767	0.419(4011)	0.121(85)	0.075(1298)	non tumor-specific	nAS	yes
CSGALNACT1_LS026	chr8:19601865|19682696:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000397998.7	0.061	0.046	0.958	0.152(1457)	0.218(153)	0.204(3547)	non tumor-specific	nAS	yes
UN_AF212831.1_UP_LS0010	chr21:16973524|17019692:-	AF212831.1	-	lncRNA gene	no	.	4.973	1.175	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NRDE2_LS0011	chr14:90272549|90305795:+	NRDE2	NRDE-2, necessary for RNA interference, domain containing	protein coding gene	no	.	1.425	0.274	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
MELK_LS027	chr9:36633200|36642997:+	MELK	maternal embryonic leucine zipper kinase	protein coding gene	no	ENST00000298048.6;ENST00000543751.5;ENST00000536860.5;ENST00000541717.4;ENST00000536329.5;ENST00000627766.2;ENST00000536987.5;ENST00000545008.5;ENST00000625974.2;ENST00000626154.2	20.002	2.890	1.780	0.844(8084)	0.348(244)	0.49(8512)	non tumor-specific	exon_skip	yes
UN_SPECC1L-ADORA2A_LS0092	chr22:24432027|24432621:+	SPECC1L-ADORA2A	SPECC1L-ADORA2A readthrough (NMD candidate)	protein coding gene	no	.	0.809	0.139	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PTMS_LS0068	chr12:6767585|6769603:+	PTMS	parathymosin	protein coding gene	no	.	4.846	0.251	0.000	0.006(55)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PCSK6_LS026	chr15:101370523|101382092:-	PCSK6	proprotein convertase subtilisin/kexin type 6	protein coding gene	no	ENST00000611716.4;ENST00000618548.4;ENST00000622483.4;ENST00000619160.4;ENST00000560902.5;ENST00000611967.4;ENST00000615296.4;ENST00000331826.11;ENST00000558154.1	15.097	15.932	7.687	0.854(8182)	0.969(680)	0.923(16050)	non tumor-specific	exon_skip	yes
AL024474.2_LS001	chr6:144312093|144333196:-	AL024474.2	-	lncRNA gene	no	ENST00000431309.1	1.698	0.001	0.944	0.011(101)	0.003(2)	0(1)	non tumor-specific	nAS	yes
TMPRSS11D_LS013	chr4:67838329|67854068:-	TMPRSS11D	transmembrane serine protease 11D	protein coding gene	no	ENST00000502573.5	0.244	0.135	1.232	0.067(640)	0.051(36)	0.028(492)	non tumor-specific	exon_skip	yes
AL355310.3_LS001	chr1:109540053|109543404:-	AL355310.3	-	lncRNA gene	no	ENST00000526411.1	0.010	0.000	0.832	0.015(139)	0.009(6)	0.001(9)	non tumor-specific	nAS	yes
UN_RINT1_LS0007	chr7:105536749|105542492:+	RINT1	RAD50 interactor 1	protein coding gene	yes	.	1.327	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;mutex_exons	no
FHOD1_LS024	chr16:67237569|67237657:-	FHOD1	formin homology 2 domain containing 1	protein coding gene	no	ENST00000258201.8;ENST00000567752.5;ENST00000561922.1	19.096	9.773	20.787	0.931(8924)	0.93(653)	0.972(16899)	non tumor-specific	exon_skip;intron_retention	yes
UN_PC_LS0045	chr11:66858217|66858304:+	PC	podocalyxin like	protein coding gene	no	.	5.395	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FUT3_LS025	chr19:5847694|5848834:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	ENST00000593144.1	0.218	0.140	0.640	0.011(108)	0.043(30)	0.004(67)	non tumor-specific	alt_3prime;exon_skip	yes
TRIM54_LS002	chr2:27298739|27299245:+	TRIM54	tripartite motif containing 54	protein coding gene	no	ENST00000380075.6;ENST00000296098.4	4.041	8.851	1.783	0.087(838)	0.17(119)	0.568(9867)	non tumor-specific	nAS	yes
TUBA3C_LS001	chr13:19173946|19174043:-	TUBA3C	tubulin alpha 3c	protein coding gene	no	ENST00000618094.1	41.223	0.000	0.644	0(1)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_MCUR1_LS0036	chr6:13801389|13806925:-	MCUR1	mitochondrial calcium uniporter regulator 1	protein coding gene	no	.	3.374	0.142	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SHQ1_LS014	chr3:72844423|72846215:-	SHQ1	SHQ1, H/ACA ribonucleoprotein assembly factor	protein coding gene	yes	ENST00000463369.5	0.193	0.054	0.669	0.036(346)	0.04(28)	0.044(761)	non tumor-specific	nAS	yes
HIRA_LS024	chr22:19408593|19410716:-	HIRA	histone cell cycle regulator	protein coding gene	yes	ENST00000340170.8;ENST00000263208.5;ENST00000464189.5;ENST00000452818.1	18.983	14.512	12.260	0.945(9052)	0.986(692)	0.976(16971)	non tumor-specific	nAS	yes
UN_EPB41_LS0038	chr1:29068783|29096155:+	EPB41	erythrocyte membrane protein band 4.1	protein coding gene	yes	.	1.788	1.350	0.000	0.014(137)	0.078(55)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LINC02544_UP_LS0001	chr6:169183577|169185171:-	LINC02544	long intergenic non-protein coding RNA 2544	lncRNA gene	no	.	10.907	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ADGRL3_LS015	chr4:61909745|61912719:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000512091.6;ENST00000514591.5;ENST00000509896.5;ENST00000511324.5;ENST00000506700.5;ENST00000507164.5;ENST00000508693.5;ENST00000507625.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5	4.475	3.489	2.856	0.174(1667)	0.302(212)	0.65(11298)	non tumor-specific	exon_skip	yes
UN_RHD_LS0011	chr1:25304456|25305181:+	RHD	Rh blood group D antigen	protein coding gene	no	.	4.217	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SCN10A_LS004	chr3:38709615|38710844:-	SCN10A	sodium voltage-gated channel alpha subunit 10	protein coding gene	no	ENST00000449082.3;ENST00000643108.1;ENST00000644826.1;ENST00000643924.1	2.019	0.000	0.693	0(2)	0(0)	0.016(270)	non tumor-specific	nAS	yes
UN_TNPO1_LS0001	chr5:72848247|72848385:+	TNPO1	transportin 1	protein coding gene	no	.	5.608	0.305	0.000	0.02(190)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
ITIH4-AS1_LS001	chr3:52823993|52824112:+	ITIH4-AS1	ITIH4 antisense RNA 1	lncRNA gene	no	ENST00000478366.1	1.335	4.434	0.650	0.001(10)	0.006(4)	0.02(351)	non tumor-specific	nAS	yes
UN_ATP5F1B_LS0003	chr12:56638226|56638259:+	ATP5F1B	ATP synthase F1 subunit beta	protein coding gene	no	.	11.820	0.158	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AP1B1_LS008	chr22:29331533|29331787:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	ENST00000482818.1;ENST00000432560.6;ENST00000357586.6;ENST00000405198.5;ENST00000317368.11;ENST00000402502.5;ENST00000415447.5	217.260	136.154	101.364	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PDLIM5_LS002	chr4:94455384|94455819:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	ENST00000504489.3	0.043	0.102	1.368	0.629(6028)	0.801(562)	0.55(9565)	non tumor-specific	intron_retention	yes
GOLGA2_LS016	chr9:128261757|128262563:-	GOLGA2	golgin A2	protein coding gene	no	ENST00000421699.6;ENST00000611957.4;ENST00000609374.5;ENST00000450617.5;ENST00000490257.5;ENST00000468488.1	50.515	32.426	54.255	0.988(9463)	0.994(698)	0.979(17019)	non tumor-specific	exon_skip	yes
DLL1_LS007	chr6:170286298|170288239:-	DLL1	delta like canonical Notch ligand 1	protein coding gene	no	ENST00000366756.3	15.648	9.845	16.869	0.841(8054)	0.967(679)	0.949(16503)	non tumor-specific	nAS	yes
CCDC114_LS019	chr19:48318812|48319434:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	ENST00000315396.7	0.270	0.037	0.785	0.116(1112)	0.108(76)	0.137(2380)	non tumor-specific	exon_skip	yes
UN_SHC1_LS0018	chr1:154967770|154967980:-	SHC1	SHC adaptor protein 1	protein coding gene	no	.	50.385	7.078	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
CD55_LS025	chr1:207347256|207359546:+	CD55	CD55 molecule (Cromer blood group)	protein coding gene	no	.;.	9.854	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PLCB4_LS024	chr20:9389958|9390531:+	PLCB4	phospholipase C beta 4	protein coding gene	no	ENST00000378473.7;ENST00000278655.8;ENST00000414679.6;ENST00000378493.5;ENST00000492632.5;ENST00000378501.2;ENST00000464199.5;ENST00000473151.5;ENST00000482123.1	10.509	6.451	8.545	0.621(5947)	0.832(584)	0.883(15343)	non tumor-specific	nAS	yes
UN_NRSN2_LS0006	chr20:347142|353210:+	NRSN2	neurensin 2	protein coding gene	yes	.	0.995	0.239	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ANKRD30A_LS0012	chr10:37147009|37147370:+	ANKRD30A	ankyrin repeat domain 30A	protein coding gene	no	.	0.943	0.287	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_C2orf27A_UP_LS0038	chr2:131686441|131688166:+	C2orf27A	chromosome 2 open reading frame 27A	pseudogene	no	.	13.183	5.028	0.000	0.772(7393)	0.684(480)	0(0)	non tumor-specific	nAS	no
TMEM260_LS013	chr14:56612285|56615944:+	TMEM260	transmembrane protein 260	protein coding gene	no	ENST00000556422.5;ENST00000261556.10;ENST00000555497.5;ENST00000557626.5;ENST00000539559.6;ENST00000538838.5;ENST00000556929.5;ENST00000555905.5;ENST00000553335.5	7.051	4.961	5.569	0.916(8776)	0.963(676)	0.957(16641)	non tumor-specific	alt_5prime	yes
UN_TRAPPC4_LS0010	chr11:119020329|119021760:+	TRAPPC4	trafficking protein particle complex 4	protein coding gene	no	.	4.736	0.696	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC011586.2_LS0009	chr8:16662699|16676917:-	AC011586.2	-	lncRNA gene	no	.	1.795	0.229	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACSL3_LS007	chr2:222909150|222916319:+	ACSL3	acyl-CoA synthetase long chain family member 3	protein coding gene	no	ENST00000357430.7;ENST00000392066.7;ENST00000542810.1	46.083	37.237	22.049	0.974(9336)	0.991(696)	0.978(16999)	non tumor-specific	exon_skip	yes
TDRD9_LS036	chr14:104040334|104042069:+	TDRD9	tudor domain containing 9	protein coding gene	no	ENST00000409874.8;ENST00000339063.6	11.642	3.252	2.312	0.211(2026)	0.44(309)	0.73(12691)	non tumor-specific	exon_skip	yes
UN_AL160408.1_LS0026	chr1:234676918|234679143:-	AL160408.1	-	lncRNA gene	no	.	2.206	0.450	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHS1_LS0076	chr10:113781308|113781427:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	7.916	0.749	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	nAS	no
DNAJC18_LS012	chr5:139428683|139437372:-	DNAJC18	DnaJ heat shock protein family (Hsp40) member C18	protein coding gene	no	ENST00000302060.9;ENST00000507405.5;ENST00000515581.5;ENST00000515277.5	8.546	6.522	11.551	0.905(8672)	0.92(646)	0.963(16742)	non tumor-specific	exon_skip	yes
ZNF335_LS011	chr20:45952521|45952598:-	ZNF335	zinc finger protein 335	protein coding gene	no	ENST00000322927.2	31.632	13.972	33.617	0.989(9473)	0.994(698)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CEBPB_LS0074	chr20:50191773|50192078:-	CEBPB	CCAAT enhancer binding protein beta	protein coding gene	no	.	1.739	0.657	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR46_LS017	chr6:33288235|33288358:-	WDR46	WD repeat domain 46	protein coding gene	no	ENST00000374617.8;ENST00000444176.1;ENST00000468157.5;ENST00000481025.1	88.531	40.781	47.246	0.995(9529)	0.997(700)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_DGAT2L7P_LS0001	chr7:101202015|101202144:-	DGAT2L7P	diacylglycerol O-acyltransferase 2 like 7, pseudogene	pseudogene	no	.	2.941	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
RRAS_LS001	chr19:49635660|49635734:-	RRAS	RAS related	protein coding gene	yes	ENST00000246792.3	214.451	204.072	232.888	0.959(9184)	0.963(676)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NOD2_LS015	chr16:50712401|50719925:+	NOD2	nucleotide binding oligomerization domain containing 2	protein coding gene	no	ENST00000529633.5;ENST00000529633.5	0.234	0.070	0.688	0.103(984)	0.053(37)	0.061(1064)	non tumor-specific	alt_5prime;exon_skip	yes
PROCA1_LS008	chr17:28704843|28705833:-	PROCA1	protein interacting with cyclin A1	protein coding gene	no	ENST00000584073.5	0.197	0.091	0.757	0.136(1301)	0.064(45)	0.085(1476)	non tumor-specific	intron_retention	yes
MANCR_LS003	chr10:4651203|4657601:-	MANCR	mitotically associated long non coding RNA	lncRNA gene	no	ENST00000430998.6	2.034	0.593	0.764	0.115(1104)	0.077(54)	0.147(2563)	non tumor-specific	nAS	yes
SPTBN5_LS011	chr15:41853787|41854050:-	SPTBN5	spectrin beta, non-erythrocytic 5	protein coding gene	no	ENST00000320955.7	3.208	2.656	3.835	0.335(3207)	0.283(199)	0.877(15241)	non tumor-specific	exon_skip	yes
UN_MYH7B_LS0021	chr20:34993746|34994146:+	MYH7B	myosin heavy chain 7B	protein coding gene	no	.	4.466	0.139	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HGD_LS004	chr3:120633590|120638455:-	HGD	homogentisate 1,2-dioxygenase	protein coding gene	no	ENST00000494453.1	5.251	7.444	1.830	0.45(4310)	0.62(435)	0.277(4823)	non tumor-specific	exon_skip	yes
MAGED4_LS026	chrX:52191861|52192057:+	MAGED4	MAGE family member D4	protein coding gene	no	ENST00000599522.6;ENST00000471932.5;ENST00000459685.5;ENST00000498483.5;ENST00000497348.1	37.121	10.177	0.850	0.852(8163)	0.895(628)	0.134(2334)	non tumor-specific	alt_5prime	yes
UN_RAB27A_LS0063	chr15:55303185|55303715:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	.	1.416	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
PHKB_LS025	chr16:47589102|47590305:+	PHKB	phosphorylase kinase regulatory subunit beta	protein coding gene	no	ENST00000567402.5	0.332	0.190	1.064	0.305(2923)	0.346(243)	0.542(9420)	non tumor-specific	exon_skip	yes
UN_MACROD1_UP_LS0010	chr11:64171989|64172166:-	MACROD1	mono-ADP ribosylhydrolase 1	protein coding gene	yes	.	1.662	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NEUROG3_LS0001	chr10:69573110|69573210:-	NEUROG3	neurogenin 3	protein coding gene	no	.	4.813	0.430	0.000	0.008(75)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_MUC1_LS0036	chr1:155187312|155188387:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	2.861	2.071	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PWRN1_LS018	chr15:24568563|24569783:+	PWRN1	Prader-Willi region non-protein coding RNA 1	lncRNA gene	no	ENST00000568045.5	2.006	0.341	0.992	0.001(6)	0.001(1)	0.061(1061)	non tumor-specific	nAS	yes
UN_MSTO2P_LS0017	chr1:155747896|155748400:+	MSTO2P	misato family member 2, pseudogene	pseudogene	no	.	3.569	1.661	0.000	0.24(2300)	0.279(196)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TRIP10_LS020	chr19:6744994|6746452:+	TRIP10	thyroid hormone receptor interactor 10	protein coding gene	no	ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5;ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5;ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5	58.798	25.670	60.100	0.985(9437)	0.989(694)	0.977(16989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ATN1_LS0044	chr12:6935751|6936492:-	ATN1	atrophin 1	protein coding gene	no	.	1.800	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FANCI_LS0062	chr15:89307529|89312904:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	.	8.611	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
GTF2H3_LS005	chr12:123639343|123645455:+	GTF2H3	general transcription factor IIH subunit 3	protein coding gene	no	ENST00000618160.4;ENST00000542279.5;ENST00000537368.5;ENST00000539994.5;ENST00000543341.6;ENST00000537695.5;ENST00000536375.5;ENST00000543415.5;ENST00000538533.5	13.096	7.727	10.845	0.97(9292)	0.989(694)	0.966(16790)	non tumor-specific	exon_skip	yes
INTS9_LS022	chr8:28837776|28859436:-	INTS9	integrator complex subunit 9	protein coding gene	no	ENST00000520437.1	0.413	0.209	0.595	0.244(2341)	0.265(186)	0.01(168)	non tumor-specific	exon_skip	yes
TMEM26_LS011	chr10:61431332|61436170:-	TMEM26	transmembrane protein 26	protein coding gene	no	ENST00000503886.5;ENST00000399298.7;ENST00000488505.2	2.477	1.486	1.088	0.325(3114)	0.481(338)	0.322(5591)	non tumor-specific	alt_5prime	yes
USP9Y_LS017	chrY:12771155|12773583:+	USP9Y	ubiquitin specific peptidase 9 Y-linked	protein coding gene	no	ENST00000338981.7;ENST00000426564.6	4.609	3.367	4.577	0.239(2286)	0.386(271)	0.582(10114)	non tumor-specific	nAS	yes
ALDH1A2_LS025	chr15:58014281|58138447:-	ALDH1A2	aldehyde dehydrogenase 1 family member A2	protein coding gene	yes	ENST00000557967.5	0.086	0.063	0.906	0.095(907)	0.261(183)	0.076(1314)	non tumor-specific	exon_skip	yes
UN_SHC3_UP_LS0013	chr9:89265095|89288487:-	SHC3	SHC adaptor protein 3	protein coding gene	no	.	1.042	0.245	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYO1E_LS022	chr15:59214720|59217891:-	MYO1E	myosin IE	protein coding gene	no	ENST00000288235.8;ENST00000559489.1	36.958	28.073	13.792	0.938(8990)	0.986(692)	0.949(16490)	non tumor-specific	exon_skip	yes
SIAE_LS011	chr11:124669521|124675258:-	SIAE	sialic acid acetylesterase	protein coding gene	no	ENST00000545756.5;ENST00000618733.4;ENST00000525730.1	0.603	0.453	0.781	0.178(1702)	0.303(213)	0.197(3427)	non tumor-specific	nAS	yes
UN_FBN3_LS0047	chr19:8149083|8149449:-	FBN3	fibrillin 3	protein coding gene	no	.	1.498	0.042	0.000	0.015(140)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LBR_LS007	chr1:225411440|225412454:-	LBR	lamin B receptor	protein coding gene	no	ENST00000272163.8;ENST00000338179.6	48.880	26.091	18.036	0.939(8996)	0.983(690)	0.976(16968)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF662_LS004	chr3:42908148|42908796:+	ZNF662	zinc finger protein 662	protein coding gene	no	ENST00000328199.6	0.797	0.789	2.315	0.378(3625)	0.617(433)	0.827(14371)	non tumor-specific	alt_3prime;intron_retention	yes
STAMBP_LS022	chr2:73860151|73862203:+	STAMBP	STAM binding protein	protein coding gene	no	ENST00000339566.7;ENST00000409707.5;ENST00000394073.5;ENST00000394070.6;ENST00000487811.1	35.676	19.394	49.278	0.995(9529)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_GPX3_LS0078	chr5:151028474|151028586:-	GPX3	glutathione peroxidase 3	protein coding gene	yes	.	24.717	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FRMPD3_LS0005	chrX:107546276|107547081:+	FRMPD3	FERM and PDZ domain containing 3	protein coding gene	no	.	2.112	0.298	0.000	0.04(380)	0.027(19)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RPL23AP33_UP_LS0002	chr2:185311840|185316340:-	RPL23AP33	ribosomal protein L23a pseudogene 33	pseudogene	no	.	7.128	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
DAZ3_LS008	chrY:24786585|24788894:-	DAZ3	deleted in azoospermia 3	protein coding gene	no	ENST00000382365.6	20.263	0.922	0.709	0.007(66)	0.004(3)	0.005(94)	non tumor-specific	exon_skip	yes
UN_ZDHHC2_LS0013	chr8:17210058|17210393:+	ZDHHC2	zinc finger DHHC-type palmitoyltransferase 2	protein coding gene	yes	.	37.573	26.737	0.000	0.007(66)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC025575.2_LS001	chr12:71047679|71115850:-	AC025575.2	-	lncRNA gene	no	ENST00000549357.1	2.980	0.364	0.656	0.189(1807)	0.041(29)	0.025(436)	non tumor-specific	nAS	yes
CRB3_LS002	chr19:6464350|6464608:+	CRB3	crumbs cell polarity complex component 3	protein coding gene	no	ENST00000600229.5;ENST00000356762.7	22.479	14.885	4.783	0.715(6848)	0.862(605)	0.647(11248)	non tumor-specific	exon_skip	yes
SMG8_LS004	chr17:59212030|59212341:+	SMG8	SMG8 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000580798.1	0.140	0.157	0.705	0.325(3115)	0.293(206)	0.192(3329)	non tumor-specific	alt_5prime	yes
UN_COL17A1_LS0040	chr10:104039519|104039973:-	COL17A1	collagen type XVII alpha 1 chain	protein coding gene	no	.	3.747	2.363	0.000	0.013(124)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
KIF1BP_LS012	chr10:69006929|69008841:+	KIF1BP	kinesin family binding protein	protein coding gene	no	ENST00000637738.1;ENST00000637420.1	0.170	0.048	1.058	0.032(310)	0.016(11)	0.073(1264)	non tumor-specific	exon_skip;mutex_exons	yes
TEDC2_LS012	chr16:2461800|2462149:+	TEDC2	tubulin epsilon and delta complex 2	protein coding gene	no	ENST00000361837.8;ENST00000569496.5;ENST00000567489.5;ENST00000569994.5;ENST00000563531.5;ENST00000569664.5;ENST00000483320.5;ENST00000568753.1;ENST00000565716.1;ENST00000566580.1	8.850	0.940	2.100	0.97(9293)	0.772(542)	0.758(13182)	non tumor-specific	exon_skip	yes
PAX8_LS023	chr2:113227256|113235394:-	PAX8	paired box 8	protein coding gene	yes	ENST00000348715.9;ENST00000263334.9;ENST00000429538.7;ENST00000465084.1;ENST00000497038.6;ENST00000485840.1;ENST00000348715.9;ENST00000263334.9;ENST00000429538.7;ENST00000465084.1;ENST00000497038.6;ENST00000485840.1	52.651	56.099	2.495	0.705(6759)	0.758(532)	0.776(13482)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLEC_LS031	chr8:143934730|143934810:-	PLEC	plectin	protein coding gene	no	ENST00000345136.7;ENST00000357649.6;ENST00000354589.7;ENST00000398774.6;ENST00000322810.8;ENST00000354958.6;ENST00000356346.7;ENST00000436759.6;ENST00000527303.2;ENST00000527096.5;ENST00000528025.5	53.186	37.315	25.919	0.943(9039)	0.964(677)	0.975(16950)	non tumor-specific	alt_3prime	yes
UN_METAP1_LS0008	chr4:99034355|99035400:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	.	4.041	0.873	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_VN1R38P_UP_LS0005	chr7:64294719|64295594:-	VN1R38P	vomeronasal 1 receptor 38 pseudogene	pseudogene	no	.	3.827	0.176	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS1543	chr14:105771300|105839276:+	AC246787.2	-	lncRNA gene	no	.	1.140	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNBP_UP_LS0002	chr3:129200575|129277602:-	CNBP	CCHC-type zinc finger nucleic acid binding protein	protein coding gene	no	.	3.090	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL28_LS010	chr16:370225|370310:-	MRPL28	mitochondrial ribosomal protein L28	protein coding gene	no	ENST00000450882.1	0.024	0.011	0.723	0.624(5983)	0.554(389)	0.002(41)	non tumor-specific	alt_5prime	yes
UN_AC139530.2_LS0043	chr17:81720148|81720186:-	AC139530.2	-	protein coding gene	no	.	2.109	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF766_LS011	chr19:52283413|52288042:+	ZNF766	zinc finger protein 766	protein coding gene	no	ENST00000599581.5;ENST00000600821.5	0.875	0.765	0.758	0.322(3084)	0.463(325)	0.312(5417)	non tumor-specific	exon_skip	yes
UBE2B_LS007	chr5:134376694|134380719:+	UBE2B	ubiquitin conjugating enzyme E2 B	protein coding gene	no	ENST00000265339.6;ENST00000506787.5;ENST00000507277.1	106.789	82.229	116.733	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_PRLR_LS0021	chr5:35137931|35195551:-	PRLR	prolactin receptor	protein coding gene	no	.	2.036	1.677	0.000	0.004(41)	0.071(50)	0(0)	non tumor-specific	exon_skip	no
KIF5B_LS008	chr10:32018387|32018502:-	KIF5B	kinesin family member 5B	protein coding gene	no	ENST00000302418.4	124.179	93.509	88.574	0.995(9530)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
IRF1_LS019	chr5:132488052|132489392:-	IRF1	interferon regulatory factor 1	protein coding gene	yes	ENST00000459982.5	0.559	0.492	0.656	0.049(469)	0.075(53)	0.023(394)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC096719.1_LS0012	chr4:22012069|22077325:-	AC096719.1	-	lncRNA gene	no	.	1.626	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PSMB8_LS001	chr6:32841047|32841531:-	PSMB8	proteasome 20S subunit beta 8	protein coding gene	no	ENST00000490613.1;ENST00000395339.7;ENST00000374882.7;ENST00000374881.2;ENST00000650411.1;ENST00000484003.1	398.737	152.497	135.198	0.964(9234)	0.974(684)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SCNM1_LS0024	chr1:151167414|151168125:+	SCNM1	sodium channel modifier 1	protein coding gene	no	.	12.947	0.413	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC01977_UP_LS0005	chr17:79813271|79814455:+	LINC01977	long intergenic non-protein coding RNA 1977	lncRNA gene	no	.	1.329	0.193	0.000	0.011(107)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRIK1-AS1_LS003	chr21:29749145|29763578:+	GRIK1-AS1	GRIK1 antisense RNA 1	lncRNA gene	no	ENST00000423221.5	0.465	0.381	0.913	0.133(1270)	0.225(158)	0.162(2818)	non tumor-specific	nAS	yes
NBPF20_LS047	chr1:145378986|145379617:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6	0.243	0.170	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	nAS	yes
HUWE1_LS093	chrX:53680186|53680559:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000446750.1	0.164	0.086	0.677	0.244(2340)	0.402(282)	0.124(2151)	non tumor-specific	exon_skip;mutex_exons	yes
CFAP299_LS002	chr4:80362884|80420214:+	CFAP299	cilia and flagella associated protein 299	protein coding gene	no	ENST00000514249.5	0.352	0.183	0.802	0.004(37)	0.016(11)	0.084(1458)	non tumor-specific	exon_skip	yes
CYP1B1-AS1_LS033	chr2:38131614|38180289:+	CYP1B1-AS1	CYP1B1 antisense RNA 1	lncRNA gene	no	ENST00000628135.3;ENST00000413828.3	1.698	0.691	1.051	0.043(415)	0.08(56)	0.431(7488)	non tumor-specific	nAS	yes
UN_RF00108_UP_LS0008	chr13:40057154|40060198:-	RF00108	-	small non-coding RNA gene	no	.	2.203	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
RBM45_LS009	chr2:178123651|178123828:+	RBM45	RNA binding motif protein 45	protein coding gene	no	ENST00000616198.4;ENST00000286070.9;ENST00000493048.1;ENST00000616198.4;ENST00000286070.9;ENST00000493048.1	20.263	10.372	11.769	0.99(9489)	0.996(699)	0.976(16967)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PPM1A_LS007	chr14:60250481|60267215:+	PPM1A	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein coding gene	yes	ENST00000525399.2	0.319	0.114	0.609	0.042(407)	0.044(31)	0.021(360)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
EGFLAM-AS4_LS002	chr5:38286361|38290600:-	EGFLAM-AS4	EGFLAM antisense RNA 4	lncRNA gene	no	ENST00000512496.1	5.658	0.000	0.688	0.001(6)	0(0)	0.021(370)	non tumor-specific	nAS	yes
LGALSL_LS001	chr2:64454025|64454371:+	LGALSL	galectin like	protein coding gene	no	ENST00000464281.5	0.466	0.341	0.675	0.007(65)	0.014(10)	0.014(239)	non tumor-specific	nAS	yes
SAMD4A_LS002	chr14:54568112|54702062:+	SAMD4A	sterile alpha motif domain containing 4A	protein coding gene	no	ENST00000554335.5;ENST00000251091.9;ENST00000631086.2;ENST00000392067.7;ENST00000555112.1	5.835	4.550	11.461	0.851(8154)	0.937(658)	0.936(16266)	non tumor-specific	exon_skip	yes
KCNJ11_LS003	chr11:17387846|17388841:-	KCNJ11	potassium inwardly rectifying channel subfamily J member 11	protein coding gene	no	.;.	0.589	0.023	0.000	0.008(80)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_VEGFB_LS0027	chr11:64236327|64237420:+	VEGFB	vascular endothelial growth factor B	protein coding gene	no	.	48.713	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC02469_LS0001	chr4:79663848|79666930:+	LINC02469	long intergenic non-protein coding RNA 2469	lncRNA gene	no	.	4.176	4.529	0.000	0.017(164)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_CTSF_LS0011	chr11:66564007|66564096:-	CTSF	cathepsin F	protein coding gene	no	.	20.390	8.663	0.000	0.01(95)	0.037(26)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TAP2_LS0036	chr6:32838237|32838645:-	TAP2	transporter 2, ATP binding cassette subfamily B member	protein coding gene	no	.	5.977	0.393	0.000	0.008(76)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0280	chr1:630464|634140:-	AL669831.3	-	pseudogene	no	.	403.358	2.488	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM86MP_LS002	chr4:9698483|9699345:+	FAM86MP	family with sequence similarity 86 member M, pseudogene	pseudogene	no	ENST00000340703.5	0.629	0.055	0.611	0.003(27)	0.003(2)	0.015(256)	non tumor-specific	nAS	yes
UN_RIPK1_LS0069	chr6:3114394|3114528:-	RIPK1	receptor interacting serine/threonine kinase 1	protein coding gene	no	.	1.493	0.059	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CEACAM6_LS0061	chr19:41771613|41771811:-	CEACAM6	CEA cell adhesion molecule 6	protein coding gene	yes	.	2.742	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0283	chr21:8215615|8259610:+	FP236383.1	-	lncRNA gene	no	.	132.839	43.225	0.000	0.002(23)	0.009(6)	0(0)	non tumor-specific	nAS	no
TTC39C_LS013	chr18:24114370|24114554:+	TTC39C	tetratricopeptide repeat domain 39C	protein coding gene	no	ENST00000581394.1	0.080	0.027	0.719	0.181(1737)	0.148(104)	0.048(828)	non tumor-specific	alt_5prime;intron_retention	yes
FAM230C_LS006	chr13:18229608|18230074:+	FAM230C	family with sequence similarity 230 member C	lncRNA gene	no	ENST00000623511.1	4.720	0.356	0.953	0.055(526)	0.006(4)	0.016(277)	non tumor-specific	nAS	yes
UN_IGFL2-AS1_LS0025	chr19:46198252|46201468:+	IGFL2-AS1	IGFL2 antisense RNA 1	lncRNA gene	no	.	0.891	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CTNNA3_LS001	chr10:65920617|65966612:-	CTNNA3	catenin alpha 3	protein coding gene	yes	ENST00000433211.6;ENST00000373735.1	2.500	1.930	2.019	0.071(678)	0.083(58)	0.459(7977)	non tumor-specific	nAS	yes
PLXNB2_LS071	chr22:50294778|50304820:-	PLXNB2	plexin B2	protein coding gene	no	.;.	1.561	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_VASH1_LS0025	chr14:76781053|76781400:-	VASH1	vasohibin 1	protein coding gene	no	.	0.421	0.012	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
POC1A_LS007	chr3:52145961|52146988:-	POC1A	POC1 centriolar protein A	protein coding gene	no	ENST00000296484.6;ENST00000394970.6;ENST00000474012.1	21.851	5.014	3.092	0.972(9315)	0.947(665)	0.911(15837)	non tumor-specific	alt_3prime;exon_skip	yes
TCTA_LS004	chr3:49412802|49412933:+	TCTA	T cell leukemia translocation altered	protein coding gene	no	ENST00000497786.1	0.120	0.056	0.758	0.324(3102)	0.272(191)	0.286(4978)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LYST_LS054	chr1:235800386|235800871:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000389793.6;ENST00000389794.7;ENST00000489585.5;ENST00000465349.5	4.222	1.511	4.073	0.502(4813)	0.664(466)	0.895(15549)	non tumor-specific	nAS	yes
UN_CALR_LS0043	chr19:12940452|12940592:+	CALR	calreticulin	protein coding gene	no	.	406.296	41.767	0.000	0.014(134)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
RASA3_LS012	chr13:114013248|114015209:-	RASA3	RAS p21 protein activator 3	protein coding gene	no	ENST00000334062.7	24.241	13.681	26.717	0.914(8760)	0.981(689)	0.978(17002)	non tumor-specific	alt_5prime	yes
UN_IGHA1_LS0166	chr14:105708162|105708359:-	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	493.308	218.959	0.000	0.022(214)	0.036(25)	0(0)	non tumor-specific	nAS	no
VAV2_LS004	chr9:133769503|133770378:-	VAV2	vav guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000371850.7;ENST00000371851.1	0.658	0.948	1.491	0.247(2363)	0.218(153)	0.295(5129)	non tumor-specific	alt_3prime;exon_skip	yes
JAZF1_LS004	chr7:27846547|27895220:-	JAZF1	JAZF zinc finger 1	protein coding gene	no	ENST00000420835.4	0.936	0.186	0.796	0.007(64)	0.007(5)	0.298(5179)	non tumor-specific	exon_skip	yes
LPIN2_LS007	chr18:2925368|2926723:-	LPIN2	lipin 2	protein coding gene	no	ENST00000261596.8	26.879	29.540	9.711	0.909(8706)	0.983(690)	0.965(16766)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRPAP1_LS0037	chr4:3514865|3516125:-	LRPAP1	LDL receptor related protein associated protein 1	protein coding gene	no	.	44.587	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
EOMES_LS002	chr3:27717808|27718587:-	EOMES	eomesodermin	protein coding gene	no	ENST00000449599.3;ENST00000461503.2	3.889	1.334	1.493	0.4(3829)	0.37(260)	0.439(7632)	non tumor-specific	alt_3prime	yes
CLUH_LS007	chr17:2692482|2692571:-	CLUH	clustered mitochondria homolog	protein coding gene	no	ENST00000435359.5;ENST00000570628.6;ENST00000575014.5;ENST00000574210.5;ENST00000574426.6;ENST00000572014.1	100.560	67.461	66.760	0.996(9543)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
CFTR_LS032	chr7:117610669|117611581:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000003084.10;ENST00000649406.1;ENST00000648260.1;ENST00000426809.5;ENST00000649781.1;ENST00000647720.1	51.350	40.963	2.051	0.221(2116)	0.437(307)	0.288(5004)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UVRAG_LS0016	chr11:75888903|75892129:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	.	3.414	0.099	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HLA-F_LS013	chr6:29725306|29725452:+	HLA-F	major histocompatibility complex, class I, F	protein coding gene	no	ENST00000606273.3	1.729	3.413	5.126	0.883(8463)	0.902(633)	0.927(16118)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JRK_LS0013	chr8:142666520|142668216:-	JRK	Jrk helix-turn-helix protein	protein coding gene	no	.	1.028	0.367	0.000	0.01(98)	0.013(9)	0(0)	non tumor-specific	nAS	no
SHISA6_LS007	chr17:11379509|11555740:+	SHISA6	shisa family member 6	protein coding gene	no	ENST00000432116.7	1.705	1.061	1.529	0.17(1631)	0.336(236)	0.332(5773)	non tumor-specific	exon_skip	yes
SH3D21_LS019	chr1:36319164|36319260:+	SH3D21	SH3 domain containing 21	protein coding gene	no	ENST00000453908.7;ENST00000505871.6	8.723	3.745	6.017	0.803(7695)	0.791(555)	0.94(16335)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TGFB1I1_LS010	chr16:31473556|31473682:+	TGFB1I1	transforming growth factor beta 1 induced transcript 1	protein coding gene	no	ENST00000565454.5;ENST00000394863.7;ENST00000563712.6;ENST00000561785.5;ENST00000562165.5;ENST00000564176.5;ENST00000569703.5;ENST00000361773.7;ENST00000562566.5;ENST00000394858.6;ENST00000567607.5;ENST00000568142.2;ENST00000564804.1	26.616	42.733	50.941	0.981(9402)	0.994(698)	0.973(16915)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MEN1_LS015	chr11:64807680|64807996:-	MEN1	menin 1	protein coding gene	yes	ENST00000377321.5	0.396	0.263	0.881	0.182(1741)	0.214(150)	0.388(6750)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC083864.2_UP_LS0020	chr7:35903157|35972468:+	AC083864.2	-	lncRNA gene	no	.	31.305	1.693	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC02315_UP_LS0027	chr14:40855054|40865082:+	LINC02315	long intergenic non-protein coding RNA 2315	lncRNA gene	no	.	2.773	0.000	0.000	0.011(110)	0(0)	0(0)	non tumor-specific	nAS	no
NVL_LS032	chr1:224308263|224311800:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000391875.6;ENST00000281701.10;ENST00000482491.5;ENST00000467882.5;ENST00000461466.5;ENST00000498767.1;ENST00000461546.2	10.354	5.292	11.979	0.978(9373)	0.981(689)	0.974(16933)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SEPT9_LS0165	chr17:77499312|77499398:-	SEPT9	septin 9	protein coding gene	yes	.	2.052	0.063	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	nAS	no
VPS28_LS008	chr8:144425000|144425661:-	VPS28	VPS28 subunit of ESCRT-I	protein coding gene	no	.;.	21.999	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RNA5SP389_UP_LS0504	chr14:106675137|106728283:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	35.710	11.649	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
RAPH1_LS019	chr2:203490089|203491214:-	RAPH1	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein coding gene	no	ENST00000457812.5;ENST00000319170.9;ENST00000374493.7;ENST00000630330.2;ENST00000308091.8;ENST00000439222.5;ENST00000419464.5;ENST00000423104.5;ENST00000453034.5;ENST00000418114.5;ENST00000428637.5	6.873	7.365	8.387	0.821(7865)	0.944(663)	0.932(16203)	non tumor-specific	alt_3prime	yes
ALG13_LS034	chrX:111713297|111721603:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000470971.5	0.012	0.000	0.599	0.013(121)	0.019(13)	0.007(128)	non tumor-specific	nAS	yes
QARS_LS027	chr3:49099431|49099510:-	QARS	glutaminyl-tRNA synthetase 1	protein coding gene	no	ENST00000453392.5;ENST00000637281.1;ENST00000306125.11;ENST00000636669.1;ENST00000430182.5;ENST00000414533.5;ENST00000464962.6;ENST00000637113.1;ENST00000459870.6;ENST00000636018.1;ENST00000637543.1;ENST00000634432.1;ENST00000482468.6	282.667	156.729	149.341	0.998(9565)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TMCC1_LS022	chr3:129857405|129867010:-	TMCC1	transmembrane and coiled-coil domain family 1	protein coding gene	no	ENST00000503256.5	0.806	0.043	0.623	0.01(98)	0.009(6)	0.033(582)	non tumor-specific	exon_skip	yes
NBEA_LS052	chr13:35628248|35645869:+	NBEA	neurobeachin	protein coding gene	no	ENST00000379922.3	0.643	1.890	2.029	0.118(1134)	0.423(297)	0.439(7638)	non tumor-specific	exon_skip	yes
SSPO_LS087	chr7:149820781|149820876:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000623373.3;ENST00000378016.4	2.633	0.547	1.690	0.06(574)	0.016(11)	0.609(10589)	non tumor-specific	nAS	yes
NSL1_LS007	chr1:212782426|212784363:-	NSL1	NSL1 component of MIS12 kinetochore complex	protein coding gene	no	ENST00000366978.5;ENST00000366977.7;ENST00000366976.3;ENST00000626725.1;ENST00000473995.5	54.344	26.765	27.929	0.993(9517)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
MAPK8IP1_LS003	chr11:45898190|45900138:+	MAPK8IP1	mitogen-activated protein kinase 8 interacting protein 1	protein coding gene	no	ENST00000241014.6;ENST00000395629.2	4.379	4.297	1.994	0.369(3535)	0.41(288)	0.572(9935)	non tumor-specific	exon_skip	yes
UN_PYGO2_LS0149	chr1:154963555|154963764:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	5.503	0.319	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMBIM6_LS009	chr12:49741611|49744413:+	TMBIM6	transmembrane BAX inhibitor motif containing 6	protein coding gene	no	ENST00000547832.5	0.016	0.042	0.676	0.094(904)	0.094(66)	0.101(1750)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MGAT5B_LS0017	chr17:76940848|76944103:+	MGAT5B	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein coding gene	no	.	2.353	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZSCAN21_LS005	chr7:100051610|100056971:+	ZSCAN21	zinc finger and SCAN domain containing 21	protein coding gene	no	.;.	1.334	0.193	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WDYHV1_LS0024	chr8:123459963|123467079:+	WDYHV1	N-terminal glutamine amidase 1	protein coding gene	no	.	2.092	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TSPAN9_LS0115	chr12:3283255|3283341:-	TSPAN9	tetraspanin 9	protein coding gene	no	.	1.961	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TTN_LS201	chr2:178663710|178663819:-	TTN	titin	protein coding gene	no	ENST00000589042.5;ENST00000425332.2	8.566	0.733	1.090	0.004(41)	0.01(7)	0.135(2340)	non tumor-specific	nAS	yes
RELT_LS002	chr11:73376499|73389112:+	RELT	RELT TNF receptor	protein coding gene	no	ENST00000064780.6;ENST00000544075.5	1.021	0.418	3.332	0.817(7832)	0.62(435)	0.888(15427)	non tumor-specific	exon_skip	yes
CDC20B_LS002	chr5:55114318|55119813:-	CDC20B	cell division cycle 20B	protein coding gene	no	ENST00000296733.5	2.419	0.894	0.759	0.066(637)	0.043(30)	0.015(261)	non tumor-specific	alt_5prime	yes
UN_FCGBP_LS0113	chr19:39877033|39877073:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	10.610	10.607	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	nAS	no
C6_LS021	chr5:41199912|41201558:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	ENST00000337836.9;ENST00000263413.7;ENST00000417809.1	7.059	21.959	1.659	0.166(1589)	0.405(284)	0.353(6132)	non tumor-specific	exon_skip	yes
AC009509.1_LS005	chr12:27703620|27710599:-	AC009509.1	-	lncRNA gene	no	ENST00000542660.1	0.473	0.091	0.703	0.003(25)	0.003(2)	0.023(405)	non tumor-specific	nAS	yes
COL12A1_LS040	chr6:75128425|75130091:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6	20.005	10.653	16.290	0.788(7552)	0.897(630)	0.862(14989)	non tumor-specific	nAS	yes
UN_MROH1_LS0072	chr8:144233579|144238756:+	MROH1	maestro heat like repeat family member 1	protein coding gene	no	.	2.352	1.748	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC091730.1_LS001	chr7:49230334|49253188:+	AC091730.1	-	lncRNA gene	no	ENST00000440455.1	0.007	0.000	0.714	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
LINC02160_LS002	chr5:33245056|33248542:+	LINC02160	long intergenic non-protein coding RNA 2160	lncRNA gene	no	ENST00000503577.1	1.419	0.302	0.799	0.007(71)	0.028(20)	0.034(596)	non tumor-specific	nAS	yes
FMNL2_LS011	chr2:152611605|152614851:+	FMNL2	formin like 2	protein coding gene	no	ENST00000288670.13	23.206	15.144	24.587	0.892(8543)	0.926(650)	0.949(16495)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC069540.2_UP_LS0011	chr10:83893578|83895437:-	AC069540.2	-	lncRNA gene	no	.	2.761	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CREB3L3_LS0019	chr19:4172250|4172349:-	CREB3L3	cAMP responsive element binding protein 3 like 3	protein coding gene	no	.	5.596	27.599	0.000	0.009(83)	0.02(14)	0(0)	non tumor-specific	nAS	no
SLC5A12_LS019	chr11:26712706|26721709:-	SLC5A12	solute carrier family 5 member 12	protein coding gene	no	.;.	2.466	6.610	0.000	0.005(45)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MYCBP2_LS026	chr13:77093332|77095358:-	MYCBP2	MYC binding protein 2	protein coding gene	no	ENST00000544440.6;ENST00000357337.10	22.920	19.064	22.542	0.849(8135)	0.949(666)	0.972(16899)	non tumor-specific	alt_3prime;alt_5prime	yes
PDS5B_LS033	chr13:32770560|32770654:+	PDS5B	PDS5 cohesin associated factor B	protein coding gene	yes	ENST00000315596.14;ENST00000450460.5;ENST00000474274.1	37.949	24.152	22.615	0.988(9464)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ZNF33A_LS004	chr10:38010783|38016871:+	ZNF33A	zinc finger protein 33A	protein coding gene	no	ENST00000628825.2;ENST00000628825.2	0.140	0.110	0.896	0.347(3323)	0.368(258)	0.389(6759)	non tumor-specific	alt_3prime;exon_skip	yes
ONECUT2_LS001	chr18:57436944|57476437:+	ONECUT2	one cut homeobox 2	protein coding gene	no	ENST00000491143.2	0.931	1.078	1.002	0.247(2365)	0.141(99)	0.081(1406)	non tumor-specific	exon_skip	yes
UN_IDH2_LS0045	chr15:90089687|90090479:-	IDH2	isocitrate dehydrogenase (NADP(+)) 2	protein coding gene	no	.	3.070	0.880	0.000	0.012(115)	0.017(12)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TDRD5_LS006	chr1:179595818|179618599:+	TDRD5	tudor domain containing 5	protein coding gene	no	ENST00000367614.5;ENST00000444136.5;ENST00000294848.12	2.840	1.002	1.097	0.233(2229)	0.312(219)	0.257(4463)	non tumor-specific	exon_skip	yes
EPN2_LS040	chr17:19332068|19333956:+	EPN2	epsin 2	protein coding gene	no	ENST00000314728.9;ENST00000347697.6;ENST00000395618.7;ENST00000575595.5;ENST00000395620.6;ENST00000571254.1	34.760	26.188	34.654	0.961(9209)	0.977(686)	0.97(16868)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
APOBR_LS002	chr16:28496089|28496117:+	APOBR	apolipoprotein B receptor	protein coding gene	no	ENST00000431282.2	20.269	0.095	0.912	0.001(12)	0.001(1)	0.127(2203)	non tumor-specific	intron_retention	yes
ITFG2_LS003	chr12:2817258|2824253:+	ITFG2	integrin alpha FG-GAP repeat containing 2	protein coding gene	no	ENST00000535564.1	0.525	0.286	0.649	0.591(5663)	0.635(446)	0.097(1693)	non tumor-specific	nAS	yes
UN_AL589843.1_LS0005	chr9:96687324|96688627:+	AL589843.1	-	lncRNA gene	no	.	1.572	0.238	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHD1_LS0019	chr5:98886626|98888088:-	CHD1	chromodomain helicase DNA binding protein 1	protein coding gene	yes	.	1.635	0.014	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	nAS	no
CNGB1_LS037	chr16:57962872|57962974:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5;ENST00000311183.8;ENST00000562761.1	2.780	0.000	0.752	0.006(60)	0(0)	0.023(399)	non tumor-specific	nAS	yes
ABCA7_LS040	chr19:1056243|1056330:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	14.900	5.581	12.642	0.801(7675)	0.821(576)	0.969(16849)	non tumor-specific	alt_3prime	yes
UN_IGHVII-15-1_UP_LS0001	chr14:106163958|106184919:-	IGHVII-15-1	immunoglobulin heavy variable (II)-15-1 (pseudogene)	no	no	.	9.584	2.297	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	nAS	no
ASCC2_LS027	chr22:29822395|29825087:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000542393.5	0.218	0.200	0.653	0.049(471)	0.071(50)	0.102(1768)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_PAICS_LS0020	chr4:56459865|56460142:-	PAICS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein coding gene	no	.	3.983	0.437	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
DENND4B_LS045	chr1:153944397|153946301:-	DENND4B	DENN domain containing 4B	protein coding gene	no	ENST00000361217.8	0.814	0.322	0.787	0.447(4278)	0.412(289)	0.414(7195)	non tumor-specific	alt_5prime	yes
UN_LINC01615_UP_LS0006	chr6:169174134|169175552:-	LINC01615	long intergenic non-protein coding RNA 1615	lncRNA gene	no	.	5.329	0.195	0.000	0.022(211)	0.001(1)	0(0)	non tumor-specific	nAS	no
IVD_LS013	chr15:40414982|40415401:+	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	ENST00000487418.6;ENST00000479013.6;ENST00000473112.6;ENST00000491554.6;ENST00000497252.5;ENST00000560660.1	57.000	62.120	37.424	0.995(9532)	0.997(700)	0.979(17010)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SERTAD4-AS1_LS0001	chr1:210231771|210232190:-	SERTAD4-AS1	SERTAD4 antisense RNA 1	lncRNA gene	no	.	3.137	1.407	0.000	0.065(621)	0.044(31)	0(0)	non tumor-specific	nAS	no
CTSO_LS007	chr4:155943264|155953713:-	CTSO	cathepsin O	protein coding gene	no	ENST00000433477.3	5.972	7.365	7.864	0.91(8719)	0.97(681)	0.945(16433)	non tumor-specific	nAS	yes
PTPRN_LS011	chr2:219296345|219296439:-	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	ENST00000409251.7;ENST00000295718.6;ENST00000462351.5;ENST00000423636.6;ENST00000497977.1	44.958	25.307	8.135	0.239(2290)	0.127(89)	0.485(8427)	non tumor-specific	exon_skip	yes
CRB2_LS004	chr9:123366366|123367172:+	CRB2	crumbs cell polarity complex component 2	protein coding gene	no	ENST00000359999.7;ENST00000373631.7	5.673	2.121	2.651	0.124(1185)	0.175(123)	0.227(3951)	non tumor-specific	alt_5prime;exon_skip	yes
UBASH3A_LS005	chr21:42409608|42410116:+	UBASH3A	ubiquitin associated and SH3 domain containing A	protein coding gene	no	ENST00000634453.1	0.297	0.000	0.777	0.001(9)	0(0)	0.077(1344)	non tumor-specific	nAS	yes
UN_COL3A1_LS0190	chr2:189004350|189005408:-	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	.	3.538	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC062020.1_UP_LS0095	chr2:122429981|122432750:+	AC062020.1	-	lncRNA gene	no	.	4.275	1.097	0.000	0.011(102)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DLEU1_LS0049	chr13:50665804|50712538:+	DLEU1	deleted in lymphocytic leukemia 1	lncRNA gene	yes	.	3.126	0.172	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
INTS1_LS042	chr7:1487957|1489344:-	INTS1	integrator complex subunit 1	protein coding gene	yes	ENST00000404767.7;ENST00000468115.1	57.385	31.316	44.228	0.985(9434)	0.994(698)	0.979(17015)	non tumor-specific	nAS	yes
UN_FLVCR1-DT_LS0001	chr1:212856921|212857766:-	FLVCR1-DT	FLVCR1 divergent transcript	lncRNA gene	no	.	1.482	0.757	0.000	0.011(107)	0.011(8)	0(0)	non tumor-specific	nAS	no
NSMF_LS007	chr9:137452435|137452553:-	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein coding gene	no	ENST00000437259.5;ENST00000371474.7;ENST00000371473.7;ENST00000371482.5;ENST00000371472.6;ENST00000371475.8;ENST00000265663.12;ENST00000484316.5;ENST00000482448.1	106.699	58.801	110.111	0.994(9527)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NEIL3_LS0009	chr4:177339857|177351380:+	NEIL3	nei like DNA glycosylase 3	protein coding gene	no	.	1.439	0.085	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LINC01934_LS009	chr2:181226535|181341046:+	LINC01934	long intergenic non-protein coding RNA 1934	lncRNA gene	no	ENST00000424655.1	0.391	0.000	0.615	0.001(12)	0(0)	0.004(67)	non tumor-specific	nAS	yes
UN_SNX18P10_UP_LS0032	chr21:8987197|8988509:-	SNX18P10	sorting nexin 18 pseudogene 10	pseudogene	no	.	8.399	0.431	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GLOD5_LS0008	chrX:48765689|48765835:+	GLOD5	glyoxalase domain containing 5	protein coding gene	no	.	2.065	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATF6B_LS0044	chr6:32119948|32120771:-	ATF6B	activating transcription factor 6 beta	protein coding gene	no	.	24.814	13.339	0.000	0.268(2565)	0.276(194)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
KDM8_LS017	chr16:27215989|27218961:+	KDM8	lysine demethylase 8	protein coding gene	yes	ENST00000286096.8;ENST00000441782.6;ENST00000563571.5;ENST00000567785.5;ENST00000567366.1;ENST00000567735.1	5.507	8.322	4.091	0.945(9053)	0.983(690)	0.951(16533)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CASC1_LS016	chr12:25154456|25155311:-	CASC1	cilia and flagella associated protein 94	protein coding gene	yes	ENST00000556006.6;ENST00000354189.9;ENST00000395987.7;ENST00000320267.13;ENST00000395990.6;ENST00000554533.5;ENST00000545133.5;ENST00000557684.5;ENST00000556547.5;ENST00000556467.5;ENST00000554347.1;ENST00000555240.1	2.261	1.425	1.218	0.322(3087)	0.547(384)	0.468(8134)	non tumor-specific	nAS	yes
STIL_LS012	chr1:47280363|47280946:-	STIL	STIL centriolar assembly protein	protein coding gene	yes	ENST00000436811.1	0.382	0.097	0.657	0.149(1425)	0.034(24)	0.048(836)	non tumor-specific	exon_skip;intron_retention	yes
AL591485.1_LS065	chr6:9189035|9224939:+	AL591485.1	-	no	no	ENST00000646403.1;ENST00000642760.1	1.289	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
APC_LS001	chr5:112707649|112754873:+	APC	APC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000509732.5	0.076	0.045	0.709	0.268(2563)	0.358(251)	0.234(4070)	non tumor-specific	alt_5prime;exon_skip	yes
AC008467.1_LS002	chr5:109320635|109321394:-	AC008467.1	-	lncRNA gene	no	ENST00000512693.1	1.256	0.246	1.608	0.017(159)	0.007(5)	0.669(11627)	non tumor-specific	nAS	yes
OTOAP1_LS002	chr16:22552513|22556843:+	OTOAP1	OTOA pseudogene 1	pseudogene	no	ENST00000550753.5;ENST00000548889.1	0.987	0.046	0.883	0.067(640)	0.036(25)	0.359(6235)	non tumor-specific	nAS	yes
SCRIB_LS047	chr8:143811345|143812266:-	SCRIB	scribble planar cell polarity protein	protein coding gene	yes	ENST00000356994.6;ENST00000320476.7;ENST00000377533.7;ENST00000356994.6;ENST00000320476.7;ENST00000377533.7	79.678	36.505	37.587	0.985(9433)	0.996(699)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
CLCN7_LS031	chr16:1465338|1474153:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	ENST00000564568.1	0.087	0.008	0.612	0.404(3867)	0.412(289)	0.011(196)	non tumor-specific	nAS	yes
UN_HOXB3_LS0088	chr17:48590589|48602075:+	HOXB3	homeobox B3	protein coding gene	no	.	6.612	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ABI3_UP_LS0005	chr17:49132376|49141247:+	ABI3	ABI family member 3	protein coding gene	no	.	1.448	0.794	0.000	0.002(15)	0.017(12)	0(0)	non tumor-specific	nAS	no
EBF3_LS015	chr10:129873596|129877768:-	EBF3	EBF transcription factor 3	protein coding gene	yes	ENST00000368648.7;ENST00000355311.9	3.875	1.649	4.237	0.242(2319)	0.352(247)	0.67(11650)	non tumor-specific	nAS	yes
AC244154.1_LS005	chr17:38202105|38202238:-	AC244154.1	-	pseudogene	no	ENST00000649858.1;ENST00000620148.2	6.274	4.232	0.649	0.798(7647)	0.825(579)	0.125(2178)	non tumor-specific	intron_retention	yes
DNAJC5G_LS002	chr2:27275553|27276643:+	DNAJC5G	DnaJ heat shock protein family (Hsp40) member C5 gamma	protein coding gene	no	ENST00000406962.1	0.405	0.000	1.266	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
CATSPERG_LS049	chr19:38370073|38370159:+	CATSPERG	cation channel sperm associated auxiliary subunit gamma	protein coding gene	no	ENST00000471517.5	0.812	0.000	0.868	0.001(13)	0(0)	0.145(2514)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UBAP2L_LS004	chr1:154220975|154225084:+	UBAP2L	ubiquitin associated protein 2 like	protein coding gene	no	ENST00000613315.4;ENST00000428931.5;ENST00000271877.11;ENST00000441890.5;ENST00000368504.5;ENST00000613315.4;ENST00000428931.5;ENST00000271877.11;ENST00000441890.5;ENST00000368504.5	4.686	3.280	11.784	0.941(9017)	0.964(677)	0.974(16923)	non tumor-specific	alt_5prime;exon_skip	yes
RIN3_LS005	chr14:92577477|92586447:+	RIN3	Ras and Rab interactor 3	protein coding gene	no	ENST00000555908.5;ENST00000555891.1	0.377	0.173	0.982	0.574(5495)	0.449(315)	0.408(7096)	non tumor-specific	nAS	yes
PITPNM3_LS013	chr17:6471355|6472657:-	PITPNM3	PITPNM family member 3	protein coding gene	no	ENST00000421306.7;ENST00000262483.12;ENST00000572795.1	4.323	6.793	4.214	0.501(4797)	0.806(566)	0.774(13447)	non tumor-specific	alt_3prime;exon_skip	yes
LINC02004_LS001	chr3:134313617|134320920:+	LINC02004	long intergenic non-protein coding RNA 2004	lncRNA gene	no	ENST00000482019.1	0.254	0.211	0.710	0.15(1441)	0.231(162)	0.124(2163)	non tumor-specific	nAS	yes
APEX1_LS003	chr14:20455338|20455578:+	APEX1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein coding gene	no	ENST00000555414.5	3.144	1.544	10.480	0.185(1776)	0.219(154)	0.974(16928)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_LINC00680_LS0015	chr6:57950072|57959028:-	LINC00680	long intergenic non-protein coding RNA 680	pseudogene	no	.	2.190	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
DNAH2_LS017	chr17:7740992|7742928:+	DNAH2	dynein axonemal heavy chain 2	protein coding gene	no	ENST00000572933.5;ENST00000570791.5;ENST00000389173.6;ENST00000575498.1	0.216	0.094	1.141	0.237(2271)	0.222(156)	0.179(3106)	non tumor-specific	alt_5prime	yes
G6PD_LS007	chrX:154533807|154534035:-	G6PD	glucose-6-phosphate dehydrogenase	protein coding gene	no	ENST00000369620.6	0.119	0.167	0.694	0.728(6973)	0.591(415)	0.166(2893)	non tumor-specific	alt_3prime	yes
FNBP1_LS026	chr9:129979374|129994843:-	FNBP1	formin binding protein 1	protein coding gene	no	ENST00000446176.6;ENST00000443566.6;ENST00000420781.5;ENST00000449089.6;ENST00000355681.3;ENST00000491905.1	24.105	17.114	29.922	0.965(9247)	0.99(695)	0.978(16993)	non tumor-specific	nAS	yes
GTF2H2C_LS019	chr5:69568207|69568520:+	GTF2H2C	GTF2H2 family member C	protein coding gene	no	ENST00000511629.6	0.013	0.008	0.622	0.274(2621)	0.172(121)	0.004(64)	non tumor-specific	nAS	yes
DLGAP4_LS005	chr20:36439868|36442727:+	DLGAP4	DLG associated protein 4	protein coding gene	no	ENST00000373913.7;ENST00000339266.9;ENST00000401952.6;ENST00000373907.6	2.046	2.343	8.607	0.123(1176)	0.011(8)	0.25(4354)	non tumor-specific	exon_skip	yes
UN_XIST_LS0063	chrX:73844748|73845040:-	XIST	X inactive specific transcript	lncRNA gene	yes	.	42.069	11.049	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HLA-E_LS0157	chr6:30492830|30492931:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	9.689	2.567	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL7L1P11_UP_LS0013	chrX:148371708|148383075:+	RPL7L1P11	ribosomal protein L7 like 1 pseudogene 11	pseudogene	no	.	3.053	0.416	0.000	0.015(145)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0083	chr14:105588209|105708044:+	AC246787.2	-	lncRNA gene	no	.	161.827	28.397	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
SACS_LS008	chr13:23353876|23354519:-	SACS	sacsin molecular chaperone	protein coding gene	no	ENST00000402364.1;ENST00000382292.8;ENST00000455470.6;ENST00000423156.2;ENST00000476776.1	3.072	1.417	3.643	0.808(7742)	0.775(544)	0.903(15700)	non tumor-specific	intron_retention	yes
UN_PEX26_LS0019	chr22:18080013|18083427:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	1.207	3.092	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF292_LS002	chr6:87155361|87155563:+	ZNF292	zinc finger protein 292	protein coding gene	yes	ENST00000392985.3	0.605	0.471	1.223	0.124(1190)	0.158(111)	0.593(10306)	non tumor-specific	exon_skip	yes
UN_MT-TH_UP_LS0038	chrM:6048|11274:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	571.425	17.531	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
HSD17B1_LS002	chr17:42553291|42553439:+	HSD17B1	hydroxysteroid 17-beta dehydrogenase 1	protein coding gene	no	ENST00000585807.5;ENST00000593215.1;ENST00000590299.5;ENST00000225929.5	0.428	0.160	2.054	0.487(4667)	0.38(267)	0.771(13395)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GRK6_LS017	chr5:177433676|177433914:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000506296.5;ENST00000355472.9;ENST00000507633.5;ENST00000355958.9;ENST00000528793.5;ENST00000515666.5;ENST00000508705.1	72.123	32.849	30.989	0.995(9531)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_KLHL8_LS0014	chr4:87195690|87218094:-	KLHL8	kelch like family member 8	protein coding gene	no	.	1.547	0.331	0.000	0.012(111)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_RRAGC_LS0009	chr1:38855907|38856876:-	RRAGC	Ras related GTP binding C	protein coding gene	no	.	13.518	6.682	0.000	0.033(316)	0.046(32)	0(0)	non tumor-specific	alt_5prime	no
SATB1-AS1_LS061	chr3:18586908|18604189:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000599762.5	0.057	0.000	0.923	0.001(8)	0(0)	0.004(78)	non tumor-specific	nAS	yes
AL022310.1_LS001	chr1:173174574|173175089:-	AL022310.1	-	lncRNA gene	no	ENST00000436974.1	0.080	0.024	0.829	0.034(323)	0.027(19)	0.092(1593)	non tumor-specific	nAS	yes
UN_MOV10L1_LS0010	chr22:50142189|50143046:+	MOV10L1	Mov10 like RISC complex RNA helicase 1	protein coding gene	no	.	1.619	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_SMIM8_LS0030	chr6:87388797|87391780:+	SMIM8	small integral membrane protein 8	protein coding gene	no	.	1.978	0.140	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
INCENP_LS010	chr11:62140821|62140913:+	INCENP	inner centromere protein	protein coding gene	no	ENST00000394818.7;ENST00000278849.4;ENST00000528375.1	29.925	9.767	7.201	0.973(9322)	0.95(667)	0.968(16826)	non tumor-specific	nAS	yes
UN_ST13P6_UP_LS0002	chr8:133359286|133359537:+	ST13P6	ST13, Hsp70 interacting protein pseudogene 6	pseudogene	no	.	1.164	0.238	0.000	0.01(98)	0.001(1)	0(0)	non tumor-specific	nAS	no
UQCC2_LS008	chr6:33701420|33711585:-	UQCC2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein coding gene	no	.;.	17.347	2.817	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC107959.2_LS0004	chr8:23074484|23074606:-	AC107959.2	-	lncRNA gene	no	.	2.966	0.000	0.000	0.006(53)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WBP1L_LS0017	chr10:102803275|102806088:-	WBP1L	WW domain binding protein 1 like	protein coding gene	no	.	5.253	0.304	0.000	0.011(103)	0.019(13)	0(0)	non tumor-specific	nAS	no
REEP4_LS013	chr8:22140248|22140607:-	REEP4	receptor accessory protein 4	protein coding gene	no	ENST00000521744.1	0.261	0.232	0.760	0.153(1465)	0.08(56)	0.184(3206)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GBA_LS019	chr1:155240077|155240630:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000368373.7;ENST00000327247.9;ENST00000427500.7;ENST00000484489.5;ENST00000493842.5;ENST00000473570.5	80.533	47.108	27.066	0.994(9527)	0.996(699)	0.978(17004)	non tumor-specific	alt_3prime;exon_skip	yes
MTUS2_LS016	chr13:29496450|29497238:+	MTUS2	microtubule associated scaffold protein 2	protein coding gene	no	ENST00000400542.3;ENST00000467990.1	0.154	0.086	1.112	0.131(1258)	0.09(63)	0.063(1090)	non tumor-specific	nAS	yes
UN_AL358472.5_LS0001	chr1:153923962|153926241:+	AL358472.5	-	lncRNA gene	no	.	1.674	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
UBA2_LS009	chr19:34430659|34431861:+	UBA2	ubiquitin like modifier activating enzyme 2	protein coding gene	no	ENST00000607361.5;ENST00000246548.8;ENST00000592841.5;ENST00000439527.6	65.144	32.812	47.194	0.984(9426)	0.993(697)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
NVL_LS021	chr1:224296618|224300562:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000469968.5;ENST00000391875.6;ENST00000281701.10;ENST00000482491.5;ENST00000469075.5;ENST00000340871.8;ENST00000467882.5	25.907	10.253	14.095	0.961(9204)	0.974(684)	0.977(16983)	non tumor-specific	alt_5prime;exon_skip	yes
PPP6R3_LS039	chr11:68576043|68583043:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000393800.6;ENST00000534534.5;ENST00000524904.5;ENST00000393801.7;ENST00000525421.5;ENST00000393800.6;ENST00000534534.5;ENST00000524904.5;ENST00000393801.7;ENST00000525421.5	44.361	30.239	23.747	0.965(9241)	0.986(692)	0.977(16990)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EHMT1_LS038	chr9:137775252|137776618:+	EHMT1	euchromatic histone lysine methyltransferase 1	protein coding gene	no	ENST00000460843.5;ENST00000462484.5;ENST00000371394.6;ENST00000636027.1;ENST00000637161.1;ENST00000637261.1;ENST00000638071.1;ENST00000640639.1;ENST00000462942.3	34.413	21.416	23.284	0.981(9402)	0.99(695)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_FAM157A_LS0183	chr3:198220852|198221095:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	1.407	0.090	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IFNGR2_LS0020	chr21:33437084|33439214:-	IFNGR2	interferon gamma receptor 2	protein coding gene	no	.	3.403	1.143	0.000	0.068(649)	0.054(38)	0(0)	non tumor-specific	alt_3prime	no
SULT1A1_LS025	chr16:28608859|28610130:-	SULT1A1	sulfotransferase family 1A member 1	protein coding gene	no	.;.	2.665	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SYTL2_LS001	chr11:85695340|85696183:-	SYTL2	synaptotagmin like 2	protein coding gene	no	ENST00000359152.9;ENST00000389960.8;ENST00000532995.5;ENST00000354566.7;ENST00000316356.8;ENST00000525702.5;ENST00000525423.5;ENST00000389959.8;ENST00000529581.5;ENST00000389958.7;ENST00000530351.5;ENST00000528231.5;ENST00000531496.5;ENST00000525692.1;ENST00000533892.5;ENST00000527523.5;ENST00000634661.1;ENST00000524452.5	24.249	27.832	28.274	0.962(9214)	0.967(679)	0.973(16919)	non tumor-specific	alt_3prime	yes
UN_NPIPA7_LS0005	chr16:16387806|16391891:+	NPIPA7	nuclear pore complex interacting protein family member A7	protein coding gene	no	.	1.260	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_NOC2LP1_UP_LS0004	chr2:130197769|130202325:+	NOC2LP1	NOC2 like nucleolar associated transcriptional repressor pseudogene 1	pseudogene	no	.	1.039	0.402	0.000	0.034(323)	0.036(25)	0(0)	non tumor-specific	nAS	no
KLK11_LS013	chr19:51024310|51024634:-	KLK11	kallikrein related peptidase 11	protein coding gene	no	ENST00000319756.7;ENST00000594827.5;ENST00000594458.1	12.802	3.234	8.081	0.431(4129)	0.499(350)	0.347(6032)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRRC2B_LS010	chr9:131439061|131444185:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	ENST00000405995.5;ENST00000638390.1;ENST00000357304.8	19.732	14.364	24.741	0.928(8893)	0.972(682)	0.976(16970)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RRP12_LS032	chr10:97388624|97396218:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000315563.10	0.784	0.314	0.640	0.368(3525)	0.295(207)	0.042(738)	non tumor-specific	exon_skip	yes
REPS2_LS006	chrX:17029623|17047347:+	REPS2	RALBP1 associated Eps domain containing 2	protein coding gene	no	ENST00000357277.7;ENST00000303843.7	12.128	14.464	4.340	0.824(7896)	0.929(652)	0.905(15729)	non tumor-specific	exon_skip	yes
UN_AKT2_LS0051	chr19:40233440|40233481:+	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	.	16.249	0.900	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
GCN1_LS028	chr12:120155040|120155241:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6	28.449	16.314	22.781	0.964(9239)	0.99(695)	0.976(16964)	non tumor-specific	nAS	yes
UN_COA1_UP_LS0004	chr7:43749288|43750147:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.	5.722	0.193	0.000	0.007(69)	0.019(13)	0(0)	non tumor-specific	nAS	no
TBL1X_LS012	chrX:9654322|9684043:+	TBL1X	transducin beta like 1 X-linked	protein coding gene	no	ENST00000424279.5;ENST00000407597.6;ENST00000380961.5;ENST00000415293.5;ENST00000217964.11;ENST00000645353.1;ENST00000422314.5;ENST00000645686.1;ENST00000646640.1;ENST00000647172.1;ENST00000452824.5;ENST00000647060.1	7.725	8.698	5.937	0.865(8284)	0.97(681)	0.95(16507)	non tumor-specific	exon_skip	yes
UN_FN1_LS0004	chr2:215360987|215361046:+	FN1	fibronectin 1	protein coding gene	no	.	25.690	0.778	0.000	0.011(102)	0.003(2)	0(0)	non tumor-specific	nAS	no
MICALL1_LS021	chr22:37937819|37940709:+	MICALL1	MICAL like 1	protein coding gene	no	ENST00000424008.1	20.726	11.337	2.039	0.814(7797)	0.843(592)	0.805(13989)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01881_LS007	chr2:242116232|242118965:+	LINC01881	long intergenic non-protein coding RNA 1881	pseudogene	no	ENST00000456398.5;ENST00000416103.2	3.791	2.068	4.920	0.379(3633)	0.494(347)	0.947(16455)	non tumor-specific	nAS	yes
AP001107.9_LS001	chr11:66348035|66353455:+	AP001107.9	-	lncRNA gene	no	.;.	1.130	0.458	0.000	0.001(10)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EVC2_LS0012	chr4:5574772|5584623:-	EVC2	EvC ciliary complex subunit 2	protein coding gene	no	.	1.546	0.286	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ABR_LS0129	chr17:1100735|1108879:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	5.859	2.410	0.000	0.045(430)	0.047(33)	0(0)	non tumor-specific	alt_5prime	no
MCM5_LS016	chr22:35410381|35410744:+	MCM5	minichromosome maintenance complex component 5	protein coding gene	no	ENST00000464908.5	0.220	0.113	0.728	0.074(711)	0.073(51)	0.055(963)	non tumor-specific	nAS	yes
DGKH_LS037	chr13:42214612|42215575:+	DGKH	diacylglycerol kinase eta	protein coding gene	no	ENST00000379274.6;ENST00000337343.8;ENST00000261491.9;ENST00000628433.2;ENST00000627777.2;ENST00000626247.2;ENST00000536612.3;ENST00000498255.6;ENST00000489851.1	2.711	1.446	2.430	0.534(5114)	0.671(471)	0.812(14112)	non tumor-specific	alt_5prime	yes
UN_INTS4P1_LS0027	chr7:65212794|65230979:+	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	1.319	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHGP_UP_LS0002	chr14:105669844|105702662:-	IGHGP	immunoglobulin heavy constant gamma P (non-functional)	no	no	.	6.654	0.178	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
DCTN4_LS012	chr5:150731906|150733368:-	DCTN4	dynactin subunit 4	protein coding gene	no	ENST00000446090.6;ENST00000627368.2	0.673	0.726	2.581	0.046(445)	0.01(7)	0.107(1865)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRKX_LS0015	chrX:3608939|3612177:-	PRKX	protein kinase X-linked	protein coding gene	no	.	1.892	0.822	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_CEBPD_LS0031	chr8:47737319|47737392:+	CEBPD	CCAAT enhancer binding protein delta	protein coding gene	yes	.	4.249	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STEAP1B_LS0096	chr7:22510645|22511627:+	STEAP1B	STEAP family member 1B	protein coding gene	no	.	11.451	4.107	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SUMO3_LS0006	chr21:44806138|44806311:+	SUMO3	small ubiquitin like modifier 3	protein coding gene	no	.	2.016	0.148	0.000	0.011(104)	0.004(3)	0(0)	non tumor-specific	nAS	no
CLCA4_LS011	chr1:86572720|86574540:+	CLCA4	chloride channel accessory 4	protein coding gene	no	ENST00000370563.3;ENST00000370563.3	15.545	188.801	2.634	0.21(2015)	0.318(223)	0.394(6857)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNA5SP368_UP_LS0002	chr12:101744029|101744788:+	RNA5SP368	RNA, 5S ribosomal pseudogene 368	no	no	.	2.414	0.186	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
RALGAPA2_LS020	chr20:20535803|20536656:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	ENST00000430436.5;ENST00000202677.11	11.293	8.905	7.545	0.799(7660)	0.95(667)	0.954(16578)	non tumor-specific	exon_skip	yes
REV3L_LS022	chr6:111363978|111365265:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	ENST00000434009.5;ENST00000368802.7;ENST00000368805.5;ENST00000422377.5;ENST00000435970.5;ENST00000358835.7;ENST00000413831.1	12.159	9.517	11.591	0.794(7611)	0.927(651)	0.964(16757)	non tumor-specific	exon_skip	yes
UN_MDC1_LS0052	chr6:30704539|30704663:+	MDC1	mediator of DNA damage checkpoint 1	protein coding gene	yes	.	2.055	0.176	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
POU2F1_LS018	chr1:167370214|167371917:+	POU2F1	POU class 2 homeobox 1	protein coding gene	no	ENST00000367866.6;ENST00000557909.5;ENST00000271411.8;ENST00000442313.5;ENST00000560232.6;ENST00000429375.6;ENST00000367865.5;ENST00000541643.7;ENST00000648671.1;ENST00000367862.9;ENST00000420254.7;ENST00000470928.3	5.482	2.124	2.283	0.709(6791)	0.783(550)	0.883(15340)	non tumor-specific	nAS	yes
CPNE6_LS007	chr14:24071641|24072889:+	CPNE6	copine 6	protein coding gene	no	ENST00000560761.5	0.000	0.000	0.932	0.002(18)	0.001(1)	0.034(591)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CDC42EP1_LS0022	chr22:37566218|37566482:-	CDC42EP1	CDC42 effector protein 1	protein coding gene	no	.	1.824	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
RECQL_LS021	chr12:21499615|21501463:-	RECQL	RecQ like helicase	protein coding gene	no	ENST00000536240.5	0.014	0.043	0.998	0.585(5602)	0.603(423)	0.48(8336)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TUBB3P1_UP_LS0011	chr6:89140441|89148525:+	TUBB3P1	tubulin beta 3 class III pseudogene 1	pseudogene	no	.	0.985	0.293	0.000	0.008(77)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_ARAP2_LS0058	chr4:36212454|36213243:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	1.387	0.721	0.000	0.074(707)	0.098(69)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ITSN1_LS017	chr21:33755397|33756787:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000488166.1	0.028	0.000	0.627	0.001(12)	0.006(4)	0.007(123)	non tumor-specific	exon_skip	yes
UN_BLNK_LS0003	chr10:96197063|96199735:-	BLNK	B cell linker	protein coding gene	yes	.	2.495	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AP000851.1_LS001	chr11:102606993|102607201:+	AP000851.1	-	lncRNA gene	no	ENST00000544115.1	1.164	0.152	0.563	0.013(125)	0.02(14)	0.004(70)	non tumor-specific	nAS	yes
SEC61A1_LS008	chr3:128055581|128055673:+	SEC61A1	SEC61 translocon subunit alpha 1	protein coding gene	no	ENST00000464451.5;ENST00000243253.7;ENST00000481210.5;ENST00000491668.1	148.163	78.396	79.592	0.99(9489)	0.996(699)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_CPNE8_LS0013	chr12:38684357|38695155:+	CPNE8	copine 8	protein coding gene	no	.	4.997	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FABP6_LS0021	chr5:160229222|160229546:+	FABP6	fatty acid binding protein 6	protein coding gene	no	.	4.453	1.238	0.000	0.034(328)	0.028(20)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_LINC01854_UP_LS0016	chr2:129789971|129832275:-	LINC01854	long intergenic non-protein coding RNA 1854	lncRNA gene	no	.	2.093	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WDFY1_LS0022	chr2:223895579|223898958:-	WDFY1	WD repeat and FYVE domain containing 1	protein coding gene	no	.	26.204	0.304	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_UNQ6494_UP_LS0001	chr9:89624041|89624633:+	UNQ6494	-	lncRNA gene	no	.	3.190	2.226	0.000	0.007(67)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_VASH1-AS1_LS0002	chr14:76783662|76786085:-	VASH1-AS1	VASH1 antisense RNA 1	lncRNA gene	no	.	2.425	0.269	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
MARC1_LS002	chr1:220791127|220791491:+	MARC1	mitochondrial amidoxime reducing component 1	protein coding gene	no	ENST00000492847.1	0.052	0.043	0.681	0.241(2311)	0.336(236)	0.055(951)	non tumor-specific	alt_5prime	yes
UN_PABPC4_LS0026	chr1:39565395|39567751:-	PABPC4	poly(A) binding protein cytoplasmic 4	protein coding gene	no	.	20.424	5.422	0.000	0.012(116)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PRODH_LS0002	chr22:18913526|18916974:-	PRODH	proline dehydrogenase 1	protein coding gene	yes	.	39.006	1.396	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PMM2_LS0031	chr16:8849096|8849152:-	PMM2	phosphomannomutase 2	protein coding gene	no	.	6.092	0.766	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ANKLE2_LS0054	chr12:132750535|132750643:-	ANKLE2	ankyrin repeat and LEM domain containing 2	protein coding gene	no	.	0.874	0.371	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYH14_LS0027	chr19:50226044|50226128:-	MYH14	myosin heavy chain 14	protein coding gene	no	.	10.197	6.010	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	nAS	no
GSN_LS014	chr9:121281562|121282439:+	GSN	gelsolin	protein coding gene	yes	ENST00000449733.7;ENST00000483960.5	0.054	1.051	2.710	0.744(7133)	0.869(610)	0.835(14512)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL359757.2_UP_LS0002	chr13:25117015|25117145:+	AL359757.2	-	lncRNA gene	no	.	5.421	0.902	0.000	0.007(71)	0.01(7)	0(0)	non tumor-specific	nAS	no
DENND1C_LS003	chr19:6468645|6468846:-	DENND1C	DENN domain containing 1C	protein coding gene	no	ENST00000590444.5;ENST00000381480.6;ENST00000590818.5;ENST00000590867.5;ENST00000543576.5;ENST00000591795.1	14.925	3.013	5.332	0.91(8718)	0.937(658)	0.909(15796)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RNF157_UP_LS0008	chr17:76261264|76262603:-	RNF157	ring finger protein 157	protein coding gene	no	.	1.643	0.421	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
MAP7D1_LS006	chr1:36172627|36173364:+	MAP7D1	MAP7 domain containing 1	protein coding gene	no	ENST00000429533.6;ENST00000316156.8;ENST00000373150.8;ENST00000373151.6;ENST00000462118.1;ENST00000474796.1	72.938	56.869	138.401	0.996(9541)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
SSPO_LS059	chr7:149804087|149805411:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000623373.3;ENST00000378016.4	1.599	0.195	1.521	0.027(256)	0.003(2)	0.601(10448)	non tumor-specific	nAS	yes
USP54_LS019	chr10:73529911|73530143:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	ENST00000418501.5;ENST00000466048.6;ENST00000424265.5;ENST00000339859.8;ENST00000497106.5;ENST00000498143.5;ENST00000480210.1	14.550	16.355	14.210	0.924(8853)	0.917(644)	0.942(16379)	non tumor-specific	exon_skip	yes
LY75-CD302_LS002	chr2:159777964|159780005:-	LY75-CD302	LY75-CD302 readthrough	protein coding gene	no	ENST00000504764.5;ENST00000505052.1	41.597	51.031	29.076	0.954(9138)	0.994(698)	0.978(16996)	non tumor-specific	exon_skip	yes
UN_AC112240.1_UP_LS0004	chr4:157373748|157374329:-	AC112240.1	-	pseudogene	no	.	3.243	0.194	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
MUC16_LS064	chr19:8904028|8904642:-	MUC16	mucin 16, cell surface associated	protein coding gene	no	ENST00000397910.8	6.360	1.755	1.468	0.117(1122)	0.123(86)	0.094(1640)	non tumor-specific	mutex_exons	yes
UN_MESP2_UP_LS0001	chr15:89753764|89756156:+	MESP2	mesoderm posterior bHLH transcription factor 2	protein coding gene	no	.	3.011	0.890	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	nAS	no
TXNRD3_LS003	chr3:126607973|126608499:-	TXNRD3	thioredoxin reductase 3	protein coding gene	no	ENST00000519162.1;ENST00000383572.2;ENST00000524230.6;ENST00000518740.5;ENST00000523403.2;ENST00000640797.1;ENST00000640433.1	15.324	8.398	12.664	0.933(8937)	0.929(652)	0.954(16587)	non tumor-specific	nAS	yes
UN_ZFPM1_LS0052	chr16:88528238|88532005:+	ZFPM1	zinc finger protein, FOG family member 1	protein coding gene	no	.	7.158	1.235	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
BDNF-AS_LS011	chr11:27659228|27675297:+	BDNF-AS	BDNF antisense RNA	lncRNA gene	no	ENST00000499008.7	0.193	0.115	0.884	0.294(2818)	0.417(293)	0.344(5971)	non tumor-specific	nAS	yes
C8orf59_LS005	chr8:85215037|85217386:-	C8orf59	ribosomal biogenesis factor	protein coding gene	no	ENST00000619594.4;ENST00000612977.4;ENST00000612809.4;ENST00000611854.4;ENST00000615697.4;ENST00000523281.5;ENST00000619594.4;ENST00000612977.4;ENST00000612809.4;ENST00000611854.4;ENST00000615697.4;ENST00000523281.5	163.817	80.241	170.356	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
WDR5_LS014	chr9:134154541|134155693:+	WDR5	WD repeat domain 5	protein coding gene	no	.;.	5.187	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GP2_LS033	chr16:20326467|20327467:-	GP2	glycoprotein 2	protein coding gene	no	ENST00000302555.9;ENST00000341642.9;ENST00000381362.8;ENST00000381360.9;ENST00000572478.5;ENST00000575730.1	8.724	10.589	2.154	0.15(1438)	0.328(230)	0.469(8144)	non tumor-specific	alt_3prime;mutex_exons	yes
UN_IGHA1_LS0063	chr14:105707424|105707929:+	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	346.946	14.803	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF185_LS028	chrX:152941830|152945267:+	ZNF185	zinc finger protein 185 with LIM domain	protein coding gene	yes	ENST00000454925.1	0.546	0.247	0.902	0.443(4240)	0.547(384)	0.471(8181)	non tumor-specific	alt_5prime	yes
AP005131.3_LS001	chr18:13561906|13562880:-	AP005131.3	-	lncRNA gene	no	ENST00000590042.1	6.321	0.052	0.515	0.001(5)	0.001(1)	0(3)	non tumor-specific	nAS	yes
UN_TRIB1_UP_LS0005	chr8:125418251|125420699:+	TRIB1	tribbles pseudokinase 1	protein coding gene	yes	.	1.571	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
SDK2_LS002	chr17:73348725|73350237:-	SDK2	sidekick cell adhesion molecule 2	protein coding gene	no	ENST00000392650.7;ENST00000424778.1;ENST00000410094.5	6.915	2.206	1.850	0.469(4494)	0.575(404)	0.634(11024)	non tumor-specific	nAS	yes
UN_LINC01901_LS0013	chr18:39879305|39909524:-	LINC01901	long intergenic non-protein coding RNA 1901	lncRNA gene	no	.	1.266	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COL18A1_LS0068	chr21:45483974|45484006:-	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	4.096	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SEMA4D_LS028	chr9:89418118|89418363:-	SEMA4D	semaphorin 4D	protein coding gene	no	ENST00000420987.5;ENST00000537934.5;ENST00000450295.5;ENST00000438547.6;ENST00000356444.6;ENST00000482128.1	1.427	1.347	2.150	0.672(6434)	0.739(519)	0.693(12049)	non tumor-specific	alt_5prime;exon_skip	yes
GOLGA4_LS005	chr3:37251467|37282092:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000435830.6	0.738	0.000	0.649	0.003(31)	0.001(1)	0.064(1116)	non tumor-specific	nAS	yes
SOX10_LS008	chr22:37978135|37983357:-	SOX10	SRY-box transcription factor 10	protein coding gene	no	ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1;ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1;ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1	4.546	1.312	11.376	0.197(1889)	0.308(216)	0.787(13682)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FAM25G_LS0002	chr10:47489648|47490840:-	FAM25G	family with sequence similarity 25 member G	protein coding gene	no	.	4.942	0.593	0.000	0.015(148)	0.014(10)	0(0)	non tumor-specific	nAS	no
TTN_LS209	chr2:178665791|178666824:-	TTN	titin	protein coding gene	no	ENST00000589042.5	2.540	0.000	0.748	0.001(5)	0(0)	0.032(552)	non tumor-specific	exon_skip	yes
UN_MRPL34_LS0042	chr19:17306438|17306532:-	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	.	2.706	6.829	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADK_LS011	chr10:74398579|74525256:+	ADK	adenosine kinase	protein coding gene	no	ENST00000286621.6;ENST00000541550.5;ENST00000372734.3	88.065	59.064	33.250	0.994(9525)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
DNPEP_LS024	chr2:219386778|219386892:-	DNPEP	aspartyl aminopeptidase	protein coding gene	no	ENST00000520694.6;ENST00000273075.8;ENST00000373972.5;ENST00000523282.5;ENST00000373963.5;ENST00000373966.5;ENST00000457935.5;ENST00000429013.5;ENST00000521459.5;ENST00000460963.5;ENST00000322176.11;ENST00000434339.5;ENST00000430206.5;ENST00000523527.5;ENST00000519698.1;ENST00000519905.1	57.640	37.738	60.080	0.997(9548)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_SDC1_LS0199	chr2:20203205|20203949:+	SDC1	syndecan 1	protein coding gene	no	.	8.003	0.465	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ASPM_LS0030	chr1:197125191|197129187:-	ASPM	assembly factor for spindle microtubules	protein coding gene	no	.	11.121	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SERPINE3_LS006	chr13:51347234|51348213:+	SERPINE3	serpin family E member 3	protein coding gene	no	ENST00000524365.5;ENST00000521255.5;ENST00000400389.5	17.898	0.059	0.825	0.007(69)	0.007(5)	0.101(1752)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0491	chr14:104949855|104950351:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	2.308	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ENPP7P10_LS0006	chr4:9102838|9103383:+	ENPP7P10	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10	pseudogene	no	.	0.971	0.580	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TNKS2_LS0037	chr10:91845028|91845550:+	TNKS2	tankyrase 2	protein coding gene	no	.	3.629	0.094	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLEKHG4B_LS004	chr5:143503|144827:+	PLEKHG4B	pleckstrin homology and RhoGEF domain containing G4B	protein coding gene	no	ENST00000637938.1;ENST00000283426.11;ENST00000502646.1	6.637	1.414	1.306	0.443(4241)	0.483(339)	0.303(5264)	non tumor-specific	exon_skip	yes
SIN3A_LS037	chr15:75446395|75455788:-	SIN3A	SIN3 transcription regulator family member A	protein coding gene	no	ENST00000568309.5	0.234	0.054	0.633	0.029(281)	0.016(11)	0.034(599)	non tumor-specific	exon_skip;mutex_exons	yes
CD82_LS001	chr11:44564502|44587475:+	CD82	CD82 molecule	protein coding gene	yes	ENST00000526958.5	0.090	0.091	0.836	0.766(7342)	0.863(606)	0.207(3605)	non tumor-specific	alt_5prime	yes
PHB2_LS015	chr12:6968021|6968411:-	PHB2	prohibitin 2	protein coding gene	no	ENST00000543465.5;ENST00000535923.5;ENST00000399433.6;ENST00000542912.5;ENST00000440277.5;ENST00000545167.5;ENST00000544888.5;ENST00000536316.2	490.936	273.180	300.398	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
INCENP_LS012	chr11:62141044|62144982:+	INCENP	inner centromere protein	protein coding gene	no	ENST00000278849.4	12.284	4.960	2.986	0.956(9155)	0.91(639)	0.904(15720)	non tumor-specific	exon_skip	yes
UN_AC103982.1_UP_LS0007	chr15:88895528|88901551:-	AC103982.1	-	lncRNA gene	no	.	49.692	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MROH8_LS015	chr20:37137970|37141162:-	MROH8	maestro heat like repeat family member 8	protein coding gene	no	ENST00000343811.8;ENST00000400441.7;ENST00000400440.6;ENST00000421643.1	1.296	0.828	1.844	0.375(3591)	0.585(411)	0.779(13546)	non tumor-specific	exon_skip	yes
UN_WDPCP_LS0099	chr2:63678253|63813622:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	.	3.151	1.319	0.000	0.003(28)	0.03(21)	0(0)	non tumor-specific	exon_skip	no
UN_PLEKHS1_LS0055	chr10:113781250|113781397:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	1.595	0.372	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
RELL2_LS020	chr5:141640445|141640671:+	RELL2	RELT like 2	protein coding gene	no	ENST00000520674.5;ENST00000444782.5;ENST00000518025.5;ENST00000297164.7;ENST00000518856.1	2.780	1.663	7.827	0.901(8637)	0.828(581)	0.949(16498)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
NIPAL2_LS017	chr8:98217198|98222479:-	NIPAL2	NIPA like domain containing 2	protein coding gene	no	ENST00000522188.5	0.071	0.051	0.720	0.293(2806)	0.377(265)	0.236(4102)	non tumor-specific	alt_3prime	yes
UN_HAND2-AS1_LS0015	chr4:173609211|173658719:+	HAND2-AS1	HAND2 antisense RNA 1	lncRNA gene	no	.	0.796	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CC2D1A_LS0018	chr19:13919939|13920557:+	CC2D1A	coiled-coil and C2 domain containing 1A	protein coding gene	no	.	9.560	6.270	0.000	0.642(6154)	0.704(494)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_NACC1_LS0008	chr19:13131813|13135200:+	NACC1	nucleus accumbens associated 1	protein coding gene	no	.	1.353	0.001	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
COPRS_LS009	chr17:31856865|31858825:-	COPRS	coordinator of PRMT5 and differentiation stimulator	protein coding gene	no	ENST00000579741.1	0.085	0.049	0.695	0.489(4686)	0.479(336)	0.046(799)	non tumor-specific	alt_5prime	yes
INPP4B_LS053	chr4:142468055|142514224:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	ENST00000506243.5	0.036	0.030	0.711	0.004(41)	0.009(6)	0.001(21)	non tumor-specific	nAS	yes
ITFG2_LS002	chr12:2812856|2820086:+	ITFG2	integrin alpha FG-GAP repeat containing 2	protein coding gene	no	ENST00000537851.5	0.113	0.061	0.980	0.472(4527)	0.56(393)	0.501(8702)	non tumor-specific	nAS	yes
HLA-G_LS013	chr6:29830410|29830553:+	HLA-G	major histocompatibility complex, class I, G	protein coding gene	no	ENST00000478519.5	58.526	29.944	1.748	0.23(2203)	0.276(194)	0.669(11625)	non tumor-specific	alt_3prime;exon_skip	yes
SLC5A4_LS011	chr22:32247515|32248743:-	SLC5A4	solute carrier family 5 member 4	protein coding gene	no	ENST00000266086.5	2.595	1.942	1.075	0.044(417)	0.094(66)	0.393(6829)	non tumor-specific	nAS	yes
UN_CAPN12_LS0019	chr19:38737595|38738273:-	CAPN12	calpain 12	protein coding gene	no	.	2.620	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SYAP1_LS0039	chrX:16763609|16764130:-	SYAP1	synapse associated protein 1	protein coding gene	no	.	1.159	0.645	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RN7SL357P_UP_LS0002	chr4:56799583|56800125:+	RN7SL357P	RNA, 7SL, cytoplasmic 357, pseudogene	small non-coding RNA gene	no	.	3.371	0.416	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC02408_UP_LS0003	chr12:67349398|67421157:+	LINC02408	long intergenic non-protein coding RNA 2408	lncRNA gene	no	.	4.843	0.189	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
MSI1_LS012	chr12:120359053|120361394:-	MSI1	musashi RNA binding protein 1	protein coding gene	yes	ENST00000546622.1	0.070	0.046	0.897	0.211(2023)	0.11(77)	0.127(2206)	non tumor-specific	nAS	yes
UN_RND3_LS0016	chr2:150509332|150518988:+	RND3	Rho family GTPase 3	protein coding gene	yes	.	2.867	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRSS54_LS009	chr16:58294212|58294887:-	PRSS54	serine protease 54	protein coding gene	no	ENST00000219301.8;ENST00000543437.5;ENST00000569727.1	0.912	0.000	0.789	0.004(35)	0(0)	0.008(143)	non tumor-specific	alt_3prime	yes
PRRC2A_LS031	chr6:31636608|31636733:+	PRRC2A	proline rich coiled-coil 2A	protein coding gene	no	ENST00000376007.8;ENST00000376033.2;ENST00000492691.5;ENST00000462617.1	182.430	82.677	171.660	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AGL_LS038	chr1:99916497|99916598:+	AGL	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein coding gene	no	ENST00000361915.7;ENST00000294724.8;ENST00000370165.7;ENST00000370163.7;ENST00000361302.7;ENST00000370161.6;ENST00000637337.1	19.867	19.775	14.106	0.962(9221)	0.991(696)	0.969(16838)	non tumor-specific	nAS	yes
HNRNPL_LS016	chr19:38843914|38844008:-	HNRNPL	heterogeneous nuclear ribonucleoprotein L	protein coding gene	no	ENST00000647557.1;ENST00000221419.9;ENST00000601449.5;ENST00000388749.7;ENST00000600873.5;ENST00000598985.5;ENST00000601047.5;ENST00000600233.5	178.925	98.216	310.920	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
MAP4K5_LS025	chr14:50462781|50464052:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000013125.8;ENST00000557210.5	18.638	13.407	33.193	0.945(9050)	0.977(686)	0.978(16995)	non tumor-specific	nAS	yes
FAM86B1_LS014	chr8:12186833|12193975:-	FAM86B1	family with sequence similarity 86 member B1	protein coding gene	no	ENST00000530385.5	0.043	0.022	0.674	0.186(1778)	0.275(193)	0.093(1608)	non tumor-specific	exon_skip	yes
UN_NFE2L3_UP_LS0019	chr7:25941319|25944254:+	NFE2L3	nuclear factor, erythroid 2 like 3	protein coding gene	no	.	1.187	0.223	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ERO1B_LS0025	chr1:236268436|236269875:-	ERO1B	endoplasmic reticulum oxidoreductase 1 beta	protein coding gene	no	.	1.816	0.122	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAD54L2_LS003	chr3:51627754|51629334:+	RAD54L2	RAD54 like 2	protein coding gene	no	ENST00000487093.5;ENST00000409535.6	2.360	1.654	4.499	0.605(5801)	0.758(532)	0.918(15952)	non tumor-specific	exon_skip	yes
UN_MRPL34_LS0008	chr19:17292854|17296716:+	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	.	4.023	0.481	0.000	0.088(841)	0.048(34)	0(0)	non tumor-specific	exon_skip	no
UN_PSMF1_LS0069	chr20:1165794|1166227:+	PSMF1	proteasome inhibitor subunit 1	protein coding gene	no	.	63.943	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF783_LS020	chr7:149289457|149289938:+	ZNF783	zinc finger family member 783	protein coding gene	no	.;.;.	1.314	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AHR_UP_LS0011	chr7:16915631|16916052:+	AHR	aryl hydrocarbon receptor	protein coding gene	yes	.	0.788	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ATP10A_LS027	chr15:25841763|25861782:-	ATP10A	ATPase phospholipid transporting 10A (putative)	protein coding gene	no	ENST00000389967.8;ENST00000553577.1	0.274	0.074	0.681	0.005(49)	0.01(7)	0.05(869)	non tumor-specific	exon_skip	yes
UN_AL139039.2_UP_LS0005	chr6:10653126|10656878:-	AL139039.2	-	pseudogene	no	.	1.830	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TNRC6A_LS002	chr16:24641009|24750726:+	TNRC6A	trinucleotide repeat containing adaptor 6A	protein coding gene	no	ENST00000566108.2	3.280	0.000	1.130	0.006(55)	0(0)	0.105(1825)	non tumor-specific	nAS	yes
PTPN20_LS006	chr10:46911842|46940582:+	PTPN20	protein tyrosine phosphatase non-receptor type 20	protein coding gene	no	ENST00000508715.5	0.022	0.000	0.666	0.008(75)	0.006(4)	0.009(159)	non tumor-specific	nAS	yes
UN_EIF5B_LS0001	chr2:99337589|99354037:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	.	0.310	0.092	0.000	0.028(265)	0.043(30)	0(0)	non tumor-specific	exon_skip	no
ANKRD11_LS028	chr16:89305344|89313317:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	ENST00000378332.7;ENST00000564553.5	0.372	0.428	1.632	0.892(8543)	0.907(637)	0.76(13214)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COL1A1_LS0744	chr17:50193049|50193945:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	19.072	0.119	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
SDCBP_LS016	chr8:58572314|58578048:+	SDCBP	syndecan binding protein	protein coding gene	no	ENST00000520168.5	1.825	1.320	1.059	0.92(8819)	0.972(682)	0.532(9249)	non tumor-specific	alt_3prime;exon_skip	yes
HERPUD1_LS011	chr16:56936817|56939895:+	HERPUD1	homocysteine inducible ER protein with ubiquitin like domain 1	protein coding gene	no	ENST00000563911.5	0.046	0.140	0.718	0.221(2117)	0.291(204)	0.166(2888)	non tumor-specific	exon_skip	yes
GAL3ST2_LS001	chr2:241776984|241799065:+	GAL3ST2	galactose-3-O-sulfotransferase 3	protein coding gene	no	ENST00000192314.6	1.552	2.258	0.861	0.17(1631)	0.121(85)	0.061(1056)	non tumor-specific	nAS	yes
UN_CUL1_LS0028	chr7:148798019|148798576:+	CUL1	cullin 1	protein coding gene	yes	.	36.939	6.965	0.000	0.014(130)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
GRIP1_LS033	chr12:66539223|66541815:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000398016.7;ENST00000359742.8;ENST00000538211.5;ENST00000540433.5;ENST00000536215.5;ENST00000545666.5;ENST00000542309.5;ENST00000539540.5;ENST00000541947.1	3.960	1.696	2.167	0.392(3759)	0.506(355)	0.537(9339)	non tumor-specific	nAS	yes
SYVN1_LS003	chr11:65122445|65129729:-	SYVN1	synoviolin 1	protein coding gene	no	ENST00000530451.1	0.082	0.020	0.652	0.059(564)	0.068(48)	0.028(492)	non tumor-specific	nAS	yes
UN_ZMIZ1_LS0180	chr10:79315291|79315336:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	.	8.172	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC139530.1_UP_LS0001	chr17:81797836|81797886:-	AC139530.1	-	lncRNA gene	no	.	0.744	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE2Q2_LS0017	chr15:75873568|75879098:+	UBE2Q2	ubiquitin conjugating enzyme E2 Q2	protein coding gene	no	.	4.352	0.142	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TSC22D3_LS011	chrX:107775525|107776003:-	TSC22D3	TSC22 domain family member 3	protein coding gene	no	ENST00000502650.1	0.062	0.114	0.707	0.142(1358)	0.162(114)	0.207(3598)	non tumor-specific	alt_3prime	yes
ARHGAP35_LS001	chr19:46922356|46937264:+	ARHGAP35	Rho GTPase activating protein 35	protein coding gene	no	ENST00000614079.1;ENST00000404338.7	37.809	34.964	31.059	0.963(9226)	0.974(684)	0.979(17010)	non tumor-specific	exon_skip	yes
WDR36_LS005	chr5:111100721|111102345:+	WDR36	WD repeat domain 36	protein coding gene	no	ENST00000506538.6;ENST00000612402.4;ENST00000513710.3;ENST00000505303.5;ENST00000504122.2	7.875	4.400	4.117	0.868(8312)	0.954(670)	0.912(15845)	non tumor-specific	alt_3prime	yes
UN_ITGB2_LS0086	chr21:44927744|44927854:+	ITGB2	integrin subunit beta 2	protein coding gene	no	.	1.137	0.073	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABCB10_LS0031	chr1:229549584|229558136:-	ABCB10	ATP binding cassette subfamily B member 10	protein coding gene	no	.	0.369	0.031	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_CADPS2_LS0038	chr7:122663569|122702193:-	CADPS2	calcium dependent secretion activator 2	protein coding gene	no	.	0.994	0.461	0.000	0.012(114)	0.02(14)	0(0)	non tumor-specific	nAS	no
THADA_LS062	chr2:43592416|43595647:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405006.8;ENST00000405006.8	0.507	0.359	0.850	0.486(4653)	0.6(421)	0.439(7639)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PKP4_LS035	chr2:158666563|158669151:+	PKP4	plakophilin 4	protein coding gene	no	ENST00000495123.5	0.210	0.084	1.990	0.611(5853)	0.631(443)	0.711(12350)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ABTB1_LS018	chr3:127676581|127676967:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000467179.5;ENST00000468137.5;ENST00000491633.5;ENST00000478298.5;ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000467179.5;ENST00000468137.5;ENST00000491633.5;ENST00000478298.5	11.164	11.698	94.467	0.991(9498)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL390728.4_LS0007	chr1:247191014|247191260:-	AL390728.4	-	pseudogene	no	.	1.802	0.531	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
MACF1_LS098	chr1:39439500|39441003:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000567887.5;ENST00000372915.7;ENST00000361689.6;ENST00000564288.5;ENST00000372925.6;ENST00000289893.8;ENST00000469490.1	58.364	52.219	77.845	0.934(8949)	0.986(692)	0.979(17010)	non tumor-specific	exon_skip	yes
UN_KRT75_UP_LS0028	chr12:52450578|52472240:-	KRT75	keratin 75	protein coding gene	no	.	596.247	1.690	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLEC18C_LS001	chr16:70173648|70174173:+	CLEC18C	C-type lectin domain family 18 member C	protein coding gene	no	ENST00000562923.5;ENST00000618957.4	0.121	0.235	1.040	0.131(1251)	0.177(124)	0.01(166)	non tumor-specific	alt_3prime;alt_5prime	yes
CASP3_LS006	chr4:184635418|184638401:-	CASP3	caspase 3	protein coding gene	no	ENST00000393585.6;ENST00000308394.8;ENST00000523916.5;ENST00000517513.5;ENST00000393588.8;ENST00000447121.2	28.667	15.941	10.696	0.972(9309)	0.993(697)	0.976(16957)	non tumor-specific	alt_3prime;exon_skip	yes
ANKRD20A3_LS008	chr9:66127780|66131728:-	ANKRD20A3	ankyrin repeat domain 20 family member A3, pseudogene	protein coding gene	no	ENST00000611388.1	0.152	0.047	0.695	0.105(1008)	0.145(102)	0.003(44)	non tumor-specific	nAS	yes
UN_AL512306.3_UP_LS0010	chr1:204558729|204558948:+	AL512306.3	-	lncRNA gene	no	.	3.133	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_SIAH2_UP_LS0001	chr3:150764193|150770564:-	SIAH2	siah E3 ubiquitin protein ligase 2	protein coding gene	no	.	5.085	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MIR205HG_LS009	chr1:209430500|209431743:+	MIR205HG	MIR205 host gene	lncRNA gene	no	ENST00000429156.5	22.883	8.135	26.959	0.403(3863)	0.387(272)	0.25(4352)	non tumor-specific	nAS	yes
UN_CSRP1_LS0044	chr1:201483786|201483827:+	CSRP1	cysteine and glycine rich protein 1	protein coding gene	no	.	12.400	8.251	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_JMJD1C_LS0052	chr10:63195350|63197411:-	JMJD1C	jumonji domain containing 1C	protein coding gene	no	.	1.129	0.256	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
RASGRP1_LS031	chr15:38560005|38564973:-	RASGRP1	RAS guanyl releasing protein 1	protein coding gene	no	ENST00000561117.5	0.010	0.010	0.852	0.126(1203)	0.172(121)	0.019(326)	non tumor-specific	nAS	yes
CARNMT1_LS010	chr9:75017448|75028012:-	CARNMT1	carnosine N-methyltransferase 1	protein coding gene	no	ENST00000376834.7;ENST00000376830.3	2.762	1.920	2.755	0.916(8772)	0.962(675)	0.877(15249)	non tumor-specific	exon_skip	yes
SULT1B1_LS003	chr4:69733507|69734138:-	SULT1B1	sulfotransferase family 1B member 1	protein coding gene	no	ENST00000310613.7	5.205	12.633	1.834	0.221(2113)	0.358(251)	0.49(8510)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF283_LS0006	chr19:43828281|43830263:+	ZNF283	zinc finger protein 283	protein coding gene	no	.	1.032	0.069	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AC244517.8_LS0002	chr5:141178069|141182298:+	AC244517.8	-	lncRNA gene	no	.	0.501	0.022	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
BLK_LS003	chr8:11494591|11546052:+	BLK	BLK proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000529894.1	0.046	1.755	1.496	0.111(1066)	0.147(103)	0.133(2312)	non tumor-specific	exon_skip	yes
CCDC197_LS004	chr14:93997571|93997999:+	CCDC197	coiled-coil domain containing 197	protein coding gene	no	ENST00000359253.2;ENST00000636493.1	0.953	0.000	0.655	0(2)	0(0)	0.011(184)	non tumor-specific	nAS	yes
UN_KIN_LS0008	chr10:7769345|7778838:-	KIN	Kin17 DNA and RNA binding protein	protein coding gene	no	.	2.590	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
RCE1_LS001	chr11:66843640|66843759:+	RCE1	symbol withdrawn, see [HGNC:13721](/data/gene-symbol-report/#!/hgnc_id/HGNC:13721)	protein coding gene	no	ENST00000309657.7;ENST00000524506.5;ENST00000524849.5;ENST00000530610.1;ENST00000534822.1	6.922	3.688	14.660	0.984(9425)	0.974(684)	0.977(16988)	non tumor-specific	intron_retention	yes
ARFGAP3_LS012	chr22:42831636|42834242:-	ARFGAP3	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	ENST00000263245.9;ENST00000437119.6	66.746	54.960	38.566	0.981(9403)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
MIS18BP1_LS011	chr14:45226836|45227663:-	MIS18BP1	MIS18 binding protein 1	protein coding gene	no	ENST00000310806.8;ENST00000454990.5	21.309	7.976	6.785	0.88(8428)	0.917(644)	0.935(16248)	non tumor-specific	exon_skip	yes
IPO11_LS014	chr5:62474464|62476683:+	IPO11	importin 11	protein coding gene	no	ENST00000424533.5;ENST00000325324.10;ENST00000409296.7	11.403	7.720	6.009	0.843(8074)	0.932(654)	0.937(16279)	non tumor-specific	nAS	yes
IST1_LS034	chr16:71923380|71924769:+	IST1	IST1 factor associated with ESCRT-III	protein coding gene	yes	ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6;ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6;ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6	87.232	56.643	76.678	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HMCN1_LS098	chr1:186152871|186153750:+	HMCN1	hemicentin 1	protein coding gene	no	ENST00000271588.8	8.988	4.879	4.766	0.469(4493)	0.684(480)	0.789(13718)	non tumor-specific	nAS	yes
UN_CSDE1_LS0064	chr1:114749904|114750149:-	CSDE1	cold shock domain containing E1	protein coding gene	no	.	9.504	1.436	0.000	0.011(101)	0.007(5)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
UN_RPSAP68_UP_LS0534	chr21:8401280|8445322:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	244.061	14.320	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
ADAM9_LS028	chr8:39083073|39091259:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000481873.7	0.309	0.366	0.848	0.216(2071)	0.168(118)	0.313(5433)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DEAF1_LS0042	chr11:688049|688331:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	.	13.994	0.413	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
DOCK1_LS032	chr10:127339084|127343646:+	DOCK1	dedicator of cytokinesis 1	protein coding gene	no	ENST00000280333.9;ENST00000623213.1;ENST00000484400.5	19.858	19.921	30.306	0.96(9197)	0.987(693)	0.941(16354)	non tumor-specific	exon_skip	yes
UN_MDM4_LS0026	chr1:204549162|204549266:+	MDM4	MDM4 regulator of p53	protein coding gene	yes	.	2.774	0.246	0.000	0.01(97)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
CNTRL_LS037	chr9:121160302|121161283:+	CNTRL	centriolin	protein coding gene	no	ENST00000373844.1;ENST00000491018.1	0.522	0.267	1.409	0.661(6332)	0.679(477)	0.68(11828)	non tumor-specific	nAS	yes
UN_AL669831.1_LS0022	chr1:727207|727305:-	AL669831.1	-	pseudogene	no	.	6.407	2.573	0.000	0.014(135)	0.004(3)	0(0)	non tumor-specific	nAS	no
WBP2_LS027	chr17:75851676|75855124:-	WBP2	WW domain binding protein 2	protein coding gene	no	ENST00000593002.1	0.014	0.569	1.027	0.85(8147)	0.89(625)	0.477(8287)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TRGC2_LS0011	chr7:38245230|38247514:-	TRGC2	T cell receptor gamma constant 2	no	no	.	5.066	0.172	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC016924.1_UP_LS0002	chr3:126214861|126215358:+	AC016924.1	-	lncRNA gene	no	.	2.067	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RECQL5_LS0066	chr17:75638870|75639127:+	RECQL5	RecQ like helicase 5	protein coding gene	no	.	2.850	0.534	0.000	0.006(61)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LINC00845_UP_LS0002	chr10:60734428|60784705:+	LINC00845	long intergenic non-protein coding RNA 845	lncRNA gene	no	.	0.736	0.724	0.000	0.003(33)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_TRUB1_LS0003	chr10:114938539|114951094:+	TRUB1	TruB pseudouridine synthase family member 1	protein coding gene	no	.	5.274	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZNF827_LS032	chr4:145903215|145938365:-	ZNF827	zinc finger protein 827	protein coding gene	no	ENST00000508784.5;ENST00000379448.8	3.984	2.180	2.828	0.749(7177)	0.843(592)	0.863(14998)	non tumor-specific	exon_skip	yes
ANGEL2_LS017	chr1:213008466|213015613:-	ANGEL2	angel homolog 2	protein coding gene	no	ENST00000360506.6;ENST00000360506.6	0.445	0.273	1.347	0.689(6597)	0.695(488)	0.689(11976)	non tumor-specific	alt_5prime;exon_skip	yes
AC009119.2_LS002	chr16:83912367|83948211:+	AC009119.2	-	protein coding gene	no	ENST00000566309.2	3.245	1.352	0.939	0.05(477)	0.134(94)	0.412(7166)	non tumor-specific	exon_skip	yes
TCF7_LS011	chr5:134123756|134138059:+	TCF7	transcription factor 7	protein coding gene	no	ENST00000519037.5	0.009	0.020	0.724	0.211(2017)	0.207(145)	0.014(245)	non tumor-specific	nAS	yes
UN_RAB4A_LS0009	chr1:229299072|229303806:+	RAB4A	RAB4A, member RAS oncogene family	protein coding gene	no	.	6.105	1.310	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
TGFBR3_LS015	chr1:91734959|91758613:-	TGFBR3	transforming growth factor beta receptor 3	protein coding gene	yes	ENST00000212355.8;ENST00000370399.6;ENST00000525962.5;ENST00000532540.5;ENST00000465892.6;ENST00000468996.2	7.281	20.882	12.429	0.712(6826)	0.962(675)	0.91(15818)	non tumor-specific	exon_skip	yes
PILRB_LS024	chr7:100355240|100356394:+	PILRB	paired immunoglobin like type 2 receptor beta	protein coding gene	no	ENST00000448382.5;ENST00000455145.5	0.942	0.246	8.295	0.844(8087)	0.707(496)	0.958(16653)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
PRICKLE3_LS004	chrX:49178179|49178272:-	PRICKLE3	prickle planar cell polarity protein 3	protein coding gene	no	ENST00000540849.5;ENST00000599218.5;ENST00000453382.5;ENST00000432913.5	20.611	7.964	10.550	0.951(9109)	0.99(695)	0.965(16777)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ALS2_LS037	chr2:201761818|201767229:-	ALS2	alsin Rho guanine nucleotide exchange factor ALS2	protein coding gene	no	ENST00000264276.10;ENST00000482891.5;ENST00000482789.5;ENST00000467448.5;ENST00000409632.6;ENST00000410052.1	12.013	8.698	7.928	0.936(8967)	0.984(691)	0.957(16630)	non tumor-specific	exon_skip	yes
CDH8_LS010	chr16:61713958|61727094:-	CDH8	cadherin 8	protein coding gene	no	ENST00000577730.5;ENST00000577390.5;ENST00000299345.10	0.772	1.722	1.905	0.1(954)	0.057(40)	0.222(3866)	non tumor-specific	exon_skip	yes
UN_UGDH-AS1_LS0023	chr4:39535187|39565959:-	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	.	2.428	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MRTO4_LS005	chr1:19256051|19257064:+	MRTO4	MRT4 homolog, ribosome maturation factor	protein coding gene	no	ENST00000330263.4	127.813	54.130	44.126	0.999(9569)	0.996(699)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FRMD4A_LS0057	chr10:13727865|13729286:+	FRMD4A	FERM domain containing 4A	protein coding gene	no	.	2.966	1.096	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
C1orf53_LS001	chr1:197902850|197905796:+	C1orf53	chromosome 1 open reading frame 53	protein coding gene	no	ENST00000436652.1	0.838	0.400	0.692	0.665(6374)	0.654(459)	0.097(1684)	non tumor-specific	alt_5prime	yes
CDH19_LS003	chr18:66509218|66511568:-	CDH19	cadherin 19	protein coding gene	no	ENST00000579658.5	0.244	0.277	1.848	0.08(763)	0.081(57)	0.455(7905)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CST6_LS0006	chr11:66012951|66013320:+	CST6	cystatin B	protein coding gene	yes	.	70.468	2.512	0.000	0.016(158)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL021154.1_UP_LS0005	chr1:23552073|23554415:-	AL021154.1	-	lncRNA gene	no	.	1.553	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NF1P8_LS003	chr2:131191783|131193201:-	NF1P8	neurofibromin 1 pseudogene 8	pseudogene	no	ENST00000415351.2	8.648	0.000	0.795	0.021(198)	0(0)	0.009(163)	non tumor-specific	nAS	yes
CLEC18A_LS006	chr16:69952126|69958942:+	CLEC18A	C-type lectin domain family 18 member A	protein coding gene	no	ENST00000561889.1	0.519	0.055	0.724	0.213(2036)	0.191(134)	0.001(12)	non tumor-specific	nAS	yes
UN_ST6GALNAC2_LS0020	chr17:76572802|76573195:-	ST6GALNAC2	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein coding gene	no	.	5.579	2.214	0.000	0.158(1517)	0.255(179)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SUSD3_LS0038	chr9:93079602|93081338:+	SUSD3	sushi domain containing 3	protein coding gene	no	.	2.333	0.874	0.000	0.015(143)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
PABPC1L_LS031	chr20:44933185|44935391:+	PABPC1L	poly(A) binding protein cytoplasmic 1 like	protein coding gene	no	ENST00000255136.7;ENST00000537323.5;ENST00000217073.6;ENST00000476056.5;ENST00000372824.5;ENST00000372819.5;ENST00000217075.6;ENST00000479873.5;ENST00000465761.1;ENST00000372826.6	21.914	5.001	22.734	0.978(9372)	0.919(645)	0.973(16911)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ALPK2_LS015	chr18:58538224|58578814:-	ALPK2	alpha kinase 2	protein coding gene	no	ENST00000361673.3	3.359	1.967	4.586	0.102(979)	0.207(145)	0.22(3817)	non tumor-specific	exon_skip	yes
RYR3_LS089	chr15:33821602|33822996:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000635790.1;ENST00000558060.1	0.903	0.868	3.914	0.123(1176)	0.286(201)	0.706(12279)	non tumor-specific	nAS	yes
UN_RNU6-70P_UP_LS0008	chr13:27371937|27372728:-	RNU6-70P	RNA, U6 small nuclear 70, pseudogene	small non-coding RNA gene	no	.	9.232	1.078	0.000	0.004(36)	0.019(13)	0(0)	non tumor-specific	nAS	no
KANK2_LS020	chr19:11194590|11195622:-	KANK2	KN motif and ankyrin repeat domains 2	protein coding gene	no	ENST00000586659.5;ENST00000592215.1	3.568	5.464	16.239	0.913(8751)	0.98(688)	0.94(16345)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KANK1_LS0077	chr9:538601|539516:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	0.797	0.147	0.000	0.005(51)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZSWIM7_LS0017	chr17:15997148|15999519:-	ZSWIM7	zinc finger SWIM-type containing 7	protein coding gene	no	.	0.727	0.068	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
COX7A1_LS004	chr19:36151755|36151904:-	COX7A1	cytochrome c oxidase subunit 7A1	protein coding gene	no	ENST00000437291.6	0.260	0.343	1.126	0.698(6688)	0.875(614)	0.395(6873)	non tumor-specific	exon_skip;intron_retention	yes
UN_MT-RNR1_LS0009	chrM:1203|1254:-	MT-RNR1	mitochondrially encoded 12S rRNA	small non-coding RNA gene	no	.	204.103	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AFF1_LS022	chr4:87115299|87125037:+	AFF1	AF4/FMR2 family member 1	protein coding gene	yes	ENST00000395146.8;ENST00000307808.10;ENST00000544085.5;ENST00000503369.1	20.130	24.051	19.838	0.956(9158)	0.99(695)	0.971(16881)	non tumor-specific	nAS	yes
UN_STPG1_LS0017	chr1:24379823|24380122:-	STPG1	sperm tail PG-rich repeat containing 1	protein coding gene	no	.	3.279	0.801	0.000	0.02(187)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_MYO7B_LS0008	chr2:127584332|127584785:+	MYO7B	myosin VIIB	protein coding gene	no	.	7.907	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AR_LS018	chrX:67722172|67722827:+	AR	androgen receptor	protein coding gene	yes	ENST00000612452.4	0.652	0.221	0.552	0.012(116)	0.024(17)	0(5)	non tumor-specific	nAS	yes
UN_AL451164.1_UP_LS0018	chr10:3395296|3397701:-	AL451164.1	-	lncRNA gene	no	.	1.981	0.087	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TPST2_LS0052	chr22:26561056|26561123:+	TPST2	tyrosylprotein sulfotransferase 2	protein coding gene	no	.	16.507	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC005332.7_UP_LS0033	chr17:68183499|68186737:+	AC005332.7	-	lncRNA gene	no	.	2.273	0.542	0.000	0.011(109)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_INTS10_UP_LS0001	chr8:19765030|19767579:+	INTS10	integrator complex subunit 10	protein coding gene	no	.	2.280	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NIT1_LS018	chr1:161118239|161118786:+	NIT1	nitrilase 1	protein coding gene	no	ENST00000478277.5;ENST00000478277.5	1.281	1.682	1.389	0.87(8334)	0.913(641)	0.722(12557)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC00630_LS006	chrX:102817082|102826969:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	ENST00000440496.5	0.242	0.084	1.114	0.279(2672)	0.343(241)	0.533(9258)	non tumor-specific	nAS	yes
AL359094.1_LS006	chr10:127000992|127001555:-	AL359094.1	-	lncRNA gene	no	ENST00000601242.5;ENST00000594614.5;ENST00000595456.5	1.096	0.000	0.656	0(3)	0(0)	0.001(18)	non tumor-specific	nAS	yes
ILF3_LS010	chr19:10671133|10678653:+	ILF3	interleukin enhancer binding factor 3	protein coding gene	no	ENST00000587840.5	0.331	0.301	2.357	0.867(8302)	0.866(608)	0.872(15151)	non tumor-specific	nAS	yes
CDYL_LS018	chr6:4952409|4953898:+	CDYL	chromodomain Y like	protein coding gene	no	ENST00000328908.9;ENST00000397588.7;ENST00000472453.5;ENST00000449732.6;ENST00000343762.5	45.647	22.446	18.908	0.938(8989)	0.934(656)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
SYTL3_LS021	chr6:158760745|158762076:+	SYTL3	synaptotagmin like 3	protein coding gene	no	ENST00000367081.7;ENST00000360448.7;ENST00000611299.4;ENST00000297239.10	12.246	10.122	10.252	0.876(8394)	0.944(663)	0.954(16587)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PPIAP48_UP_LS0011	chr16:64709101|64720715:+	PPIAP48	peptidylprolyl isomerase A pseudogene 48	pseudogene	no	.	1.242	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS064	chr4:122304983|122305877:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000419325.5	7.860	6.619	14.372	0.547(5243)	0.811(569)	0.969(16839)	non tumor-specific	alt_3prime	yes
FAM178B_LS006	chr2:96894051|96902620:-	FAM178B	family with sequence similarity 178 member B	protein coding gene	no	ENST00000490605.2	6.982	2.510	3.075	0.218(2091)	0.234(164)	0.672(11688)	non tumor-specific	exon_skip	yes
UN_CDC42EP3_LS0012	chr2:37671931|37672085:-	CDC42EP3	CDC42 effector protein 3	protein coding gene	no	.	0.809	0.364	0.000	0.017(161)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AL391832.2_LS0019	chr1:234961566|234962080:-	AL391832.2	-	lncRNA gene	no	.	1.981	0.161	0.000	0.02(196)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_MSTO2P_LS0032	chr1:155749631|155749898:+	MSTO2P	misato family member 2, pseudogene	pseudogene	no	.	4.197	0.298	0.000	0.029(280)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_SNRPCP10_UP_LS0006	chr3:75502439|75506085:+	SNRPCP10	small nuclear ribonucleoprotein polypeptide C pseudogene 10	pseudogene	no	.	1.125	0.123	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EHMT2_LS0045	chr6:31885011|31886581:-	EHMT2	euchromatic histone lysine methyltransferase 2	protein coding gene	no	.	11.320	1.263	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRIM31_LS005	chr6:30104167|30105168:-	TRIM31	tripartite motif containing 31	protein coding gene	yes	ENST00000471695.1;ENST00000376734.3;ENST00000468264.1;ENST00000484583.1;ENST00000471695.1;ENST00000376734.3;ENST00000468264.1;ENST00000484583.1	10.616	12.159	2.276	0.372(3566)	0.288(202)	0.085(1483)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC01090_LS006	chr2:188187053|188189070:-	LINC01090	long intergenic non-protein coding RNA 1090	lncRNA gene	no	ENST00000632331.1	2.063	0.000	0.940	0(2)	0(0)	0.027(467)	non tumor-specific	nAS	yes
GLS_LS008	chr2:190902026|190905004:+	GLS	glutaminase 2	protein coding gene	no	ENST00000320717.7;ENST00000338435.8;ENST00000469774.1;ENST00000417154.5	51.671	61.176	43.085	0.969(9281)	0.981(689)	0.978(17004)	non tumor-specific	exon_skip	yes
KBTBD11-OT1_LS003	chr8:1771597|1843353:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000636175.1	0.552	0.000	0.694	0.001(9)	0(0)	0.155(2688)	non tumor-specific	nAS	yes
NME4_LS032	chr16:405024|406346:+	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	ENST00000444498.5	16.585	13.823	15.171	0.986(9449)	0.993(697)	0.976(16965)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CES1_LS0012	chr16:55816962|55820372:-	CES1	carboxylesterase 1	protein coding gene	no	.	153.027	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MARCO_LS013	chr2:118981507|118981621:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	ENST00000327097.4	12.724	59.179	5.185	0.583(5582)	0.695(488)	0.769(13361)	non tumor-specific	nAS	yes
GTPBP3_LS001	chr19:17335111|17338008:+	GTPBP3	GTP binding protein 3, mitochondrial	protein coding gene	no	ENST00000601213.5	0.263	0.033	0.630	0.014(135)	0.004(3)	0.03(522)	non tumor-specific	nAS	yes
USP6NL_LS013	chr10:11527567|11532178:-	USP6NL	USP6 N-terminal like	protein coding gene	no	ENST00000277575.5	0.330	0.253	0.980	0.108(1037)	0.194(136)	0.158(2744)	non tumor-specific	nAS	yes
UN_ELOCP20_UP_LS0024	chr1:115539520|115541131:+	ELOCP20	elongin C pseudogene 20	pseudogene	no	.	0.991	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
INPP5K_LS018	chr17:1509799|1516456:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	ENST00000350761.9	0.018	0.038	0.701	0.056(541)	0.056(39)	0.096(1674)	non tumor-specific	exon_skip	yes
UN_MST1_LS0005	chr3:49684487|49684550:-	MST1	serine/threonine kinase 4	protein coding gene	yes	.	23.990	8.124	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AC000035.1_UP_LS0010	chr22:29502546|29511106:-	AC000035.1	-	lncRNA gene	no	.	2.396	0.072	0.000	0.023(224)	0.016(11)	0(0)	non tumor-specific	nAS	no
ST8SIA1_LS001	chr12:22063927|22066345:-	ST8SIA1	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein coding gene	no	ENST00000536535.1	0.836	0.310	1.283	0.087(831)	0.118(83)	0.377(6547)	non tumor-specific	nAS	yes
DPY19L2_LS025	chr12:63661481|63663758:-	DPY19L2	dpy-19 like 2	protein coding gene	no	ENST00000324472.8;ENST00000536494.5;ENST00000538147.1	3.033	1.722	4.176	0.266(2551)	0.47(330)	0.791(13750)	non tumor-specific	exon_skip	yes
CAPN15_LS010	chr16:533998|547559:+	CAPN15	calpain 15	protein coding gene	no	ENST00000568988.5	0.563	0.346	0.657	0.444(4254)	0.34(239)	0.089(1553)	non tumor-specific	exon_skip	yes
UN_ATP9A_LS0006	chr20:51598053|51598094:-	ATP9A	ATPase phospholipid transporting 9A (putative)	protein coding gene	no	.	16.262	2.101	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
IKZF3_LS007	chr17:39777767|39777885:-	IKZF3	IKAROS family zinc finger 3	protein coding gene	yes	ENST00000623724.3;ENST00000348427.7;ENST00000293068.9;ENST00000583368.1	1.018	0.492	1.109	0.374(3586)	0.484(340)	0.302(5256)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CDH23_LS0134	chr10:71812362|71812480:+	CDH23	cadherin related 23	protein coding gene	no	.	2.422	0.280	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TMEM72-AS1_LS001	chr10:44812183|44823190:-	TMEM72-AS1	TMEM72 antisense RNA 1	lncRNA gene	no	ENST00000450287.2	0.406	1.669	0.816	0(2)	0.001(1)	0.074(1284)	non tumor-specific	nAS	yes
BPIFA3_LS002	chr20:33223961|33224355:+	BPIFA3	BPI fold containing family A member 3	protein coding gene	no	ENST00000490499.5;ENST00000471233.1;ENST00000375454.7	10.525	0.000	0.709	0(2)	0(0)	0.024(414)	non tumor-specific	exon_skip	yes
UN_AC004980.4_UP_LS0001	chr7:76504445|76510903:+	AC004980.4	-	pseudogene	no	.	3.784	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004034.1_UP_LS0004	chr16:2954526|2955130:-	AC004034.1	-	lncRNA gene	no	.	2.557	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
NUP107_LS015	chr12:68702784|68709238:+	NUP107	nucleoporin 107	protein coding gene	no	ENST00000229179.8;ENST00000378905.6;ENST00000537598.5;ENST00000535718.5;ENST00000539906.5	33.524	12.866	14.325	0.963(9226)	0.984(691)	0.973(16909)	non tumor-specific	exon_skip	yes
UN_CALR_LS0084	chr19:12943802|12943857:+	CALR	calreticulin	protein coding gene	no	.	381.398	98.386	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_IVD_LS0066	chr15:40419684|40419979:-	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	.	4.888	0.567	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADAMTS19_LS017	chr5:129658737|129665499:+	ADAMTS19	ADAM metallopeptidase with thrombospondin type 1 motif 19	protein coding gene	no	ENST00000274487.8;ENST00000638972.1	4.786	1.006	1.254	0.082(781)	0.095(67)	0.269(4672)	non tumor-specific	nAS	yes
RAPGEF6_LS029	chr5:131505522|131508071:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000509018.5;ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000512052.5;ENST00000308008.10;ENST00000515170.5;ENST00000510071.5;ENST00000514179.5;ENST00000513227.5	4.880	2.822	2.620	0.623(5970)	0.792(556)	0.857(14903)	non tumor-specific	nAS	yes
MUC4_LS292	chr3:195784153|195784490:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	5.395	1.446	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_IL16_LS0016	chr15:81266801|81269538:+	IL16	interleukin 16	protein coding gene	no	.	5.540	0.548	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_SNORA48B_UP_LS0016	chrX:3602835|3604595:-	SNORA48B	small nucleolar RNA, H/ACA box 48B	small non-coding RNA gene	no	.	1.779	0.775	0.000	0.003(27)	0.01(7)	0(0)	non tumor-specific	nAS	no
CDT1_LS006	chr16:88806121|88806486:+	CDT1	chromatin licensing and DNA replication factor 1	protein coding gene	no	ENST00000301019.8;ENST00000569140.1	53.883	6.045	2.894	0.972(9316)	0.681(478)	0.75(13032)	non tumor-specific	nAS	yes
PIGC_LS011	chr1:172399916|172415294:-	PIGC	phosphatidylinositol glycan anchor biosynthesis class C	protein coding gene	no	ENST00000489002.5;ENST00000475059.5;ENST00000484368.1	0.683	0.808	1.760	0.567(5436)	0.671(471)	0.776(13489)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PLXNC1_LS015	chr12:94248106|94248227:+	PLXNC1	plexin C1	protein coding gene	yes	ENST00000258526.8	12.422	4.373	3.032	0.619(5926)	0.668(469)	0.83(14423)	non tumor-specific	nAS	yes
AC006378.1_LS001	chr7:93969666|93987141:+	AC006378.1	-	lncRNA gene	no	ENST00000426193.6;ENST00000426634.1	3.402	1.164	0.706	0(1)	0.001(1)	0.016(270)	non tumor-specific	nAS	yes
UN_HNRNPF_LS0064	chr10:43397348|43407717:-	HNRNPF	heterogeneous nuclear ribonucleoprotein F	protein coding gene	no	.	0.345	1.851	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SNED1_LS0080	chr2:241085375|241089188:-	SNED1	sushi, nidogen and EGF like domains 1	protein coding gene	no	.	0.740	0.598	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
GOLGA8A_LS007	chr15:34383528|34383746:-	GOLGA8A	golgin A8 family member A	protein coding gene	no	ENST00000473125.5;ENST00000432566.6;ENST00000359187.4	31.363	14.942	1.487	0.925(8864)	0.909(638)	0.653(11352)	non tumor-specific	alt_3prime	yes
INPP1_LS021	chr2:190360306|190362627:+	INPP1	inositol polyphosphate-1-phosphatase	protein coding gene	no	ENST00000392329.6;ENST00000322522.8;ENST00000413239.5;ENST00000431594.5;ENST00000444194.5;ENST00000422454.5;ENST00000458647.5;ENST00000423767.5;ENST00000409027.1;ENST00000487628.1	25.257	20.472	35.598	0.986(9446)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TRAV35_LS001	chr14:22221941|22222192:+	TRAV35	T cell receptor alpha variable 35	no	no	ENST00000390462.1	0.520	0.211	0.905	0.276(2647)	0.313(220)	0.102(1777)	non tumor-specific	nAS	yes
REXO2_LS004	chr11:114439787|114440656:+	REXO2	RNA exonuclease 2	protein coding gene	no	ENST00000542186.1	0.044	0.036	0.628	0.796(7629)	0.832(584)	0.024(422)	non tumor-specific	nAS	yes
LARP1B_LS021	chr4:128162317|128178512:+	LARP1B	La ribonucleoprotein 1B	protein coding gene	no	.;.	3.557	2.099	0.000	0.077(734)	0.127(89)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DMBT1_LS024	chr10:122590694|122591479:+	DMBT1	deleted in malignant brain tumors 1	protein coding gene	yes	ENST00000338354.8;ENST00000344338.7;ENST00000368955.7;ENST00000368909.7;ENST00000619379.1	18.727	83.259	1.571	0.173(1653)	0.282(198)	0.141(2449)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RNF180_LS0017	chr5:64330406|64330569:+	RNF180	ring finger protein 180	protein coding gene	yes	.	1.063	0.778	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC011447.3_LS0132	chr19:20244450|20247594:+	AC011447.3	-	lncRNA gene	no	.	1.954	0.120	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DAXX_LS0014	chr6:33319798|33320078:+	DAXX	death domain associated protein	protein coding gene	yes	.	0.797	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AQR_LS0019	chr15:34874864|34882502:-	AQR	aquarius intron-binding spliceosomal factor	protein coding gene	no	.	0.956	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC105036.3_LS002	chr15:75527261|75597340:-	AC105036.3	-	lncRNA gene	no	ENST00000565138.5	0.313	0.189	0.648	0.531(5089)	0.588(413)	0.014(247)	non tumor-specific	nAS	yes
WDR54_LS012	chr2:74423385|74423855:+	WDR54	WD repeat domain 54	protein coding gene	no	ENST00000426787.5	0.050	0.049	1.124	0.702(6724)	0.588(413)	0.499(8667)	non tumor-specific	exon_skip;intron_retention	yes
AL009178.3_LS003	chr6:167823278|167824542:+	AL009178.3	-	lncRNA gene	no	ENST00000645341.1	1.974	0.074	0.000	0.031(297)	0.001(1)	0(0)	non tumor-specific	nAS	yes
DNASE1L1_LS005	chrX:154403381|154403522:-	DNASE1L1	deoxyribonuclease 1 like 1	protein coding gene	no	ENST00000393638.5;ENST00000369809.5;ENST00000369807.5;ENST00000369808.7;ENST00000014935.7;ENST00000309585.9;ENST00000497242.1;ENST00000451865.5	48.195	26.186	44.539	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
MMEL1_LS032	chr1:2611340|2612127:-	MMEL1	membrane metalloendopeptidase like 1	protein coding gene	no	ENST00000378412.7;ENST00000502556.5;ENST00000504800.5	1.798	0.815	0.830	0.029(279)	0.01(7)	0.032(554)	non tumor-specific	exon_skip	yes
HJURP_LS018	chr2:233853910|233854384:-	HJURP	Holliday junction recognition protein	protein coding gene	no	ENST00000441687.5;ENST00000432087.5;ENST00000411486.6;ENST00000414924.5;ENST00000454020.1;ENST00000453122.1	8.764	1.230	1.447	0.778(7452)	0.271(190)	0.347(6026)	non tumor-specific	exon_skip;mutex_exons	yes
FAM135A_LS027	chr6:70522586|70524343:+	FAM135A	family with sequence similarity 135 member A	protein coding gene	no	.;.	1.303	0.109	0.000	0.012(113)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
IGSF9_LS020	chr1:159934284|159934425:-	IGSF9	immunoglobulin superfamily member 9	protein coding gene	no	ENST00000361509.7	1.869	1.536	2.217	0.561(5377)	0.56(393)	0.263(4565)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
KIF1BP_LS006	chr10:68999814|69000424:+	KIF1BP	kinesin family binding protein	protein coding gene	no	ENST00000637323.1	1.626	0.000	0.632	0(1)	0(0)	0.054(931)	non tumor-specific	nAS	yes
UN_USP15_LS0035	chr12:62391429|62391793:+	USP15	ubiquitin specific peptidase 15	protein coding gene	no	.	7.517	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RCN3_LS011	chr19:49537205|49546821:+	RCN3	reticulocalbin 3	protein coding gene	no	ENST00000598833.1	0.133	0.085	0.667	0.114(1094)	0.056(39)	0.058(1011)	non tumor-specific	exon_skip	yes
KIAA0895L_LS009	chr16:67178504|67179402:-	KIAA0895L	KIAA0895 like	protein coding gene	no	ENST00000570009.1	0.122	0.104	0.904	0.422(4042)	0.295(207)	0.432(7504)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LINC01010_UP_LS0009	chr6:134393296|134397710:+	LINC01010	long intergenic non-protein coding RNA 1010	lncRNA gene	no	.	2.516	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SNRPD1_LS003	chr18:21612443|21623871:+	SNRPD1	small nuclear ribonucleoprotein D2 polypeptide	protein coding gene	no	.;.;.	12.830	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_HLA-B_LS0376	chr6:31354531|31354639:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	1.105	0.357	0.000	0.009(88)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MKNK2_LS0078	chr19:2038993|2039076:+	MKNK2	MAPK interacting serine/threonine kinase 2	protein coding gene	no	.	2.667	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TEX53_LS001	chr9:114656607|114662275:-	TEX53	testis expressed 53	protein coding gene	no	ENST00000415101.1	1.070	0.001	1.070	0.001(12)	0.001(1)	0(2)	non tumor-specific	nAS	yes
UN_PLD3_LS0168	chr19:40378242|40378409:-	PLD3	phospholipase D family member 3	protein coding gene	no	.	24.824	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MPV17_LS038	chr2:27322522|27323052:-	MPV17	mitochondrial inner membrane protein MPV17	protein coding gene	no	ENST00000402310.5;ENST00000380044.5;ENST00000402722.5;ENST00000426513.6;ENST00000405983.5;ENST00000405076.5;ENST00000621183.4;ENST00000415514.5;ENST00000403262.6;ENST00000617583.4;ENST00000428910.5;ENST00000621470.4;ENST00000622003.4;ENST00000399052.8;ENST00000486898.1;ENST00000494436.1	26.738	15.889	36.781	0.979(9379)	0.984(691)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CA1_LS005	chr8:85332552|85333525:-	CA1	carbonic anhydrase 1	protein coding gene	no	ENST00000523953.5;ENST00000542576.5;ENST00000431316.3;ENST00000523022.5;ENST00000521679.5;ENST00000524324.5;ENST00000517618.5;ENST00000519991.5;ENST00000523712.5;ENST00000520663.5;ENST00000517590.5;ENST00000518233.5;ENST00000517429.5	6.396	319.363	1.636	0.115(1103)	0.219(154)	0.486(8440)	non tumor-specific	exon_skip	yes
DNAJC13_LS008	chr3:132453694|132454066:+	DNAJC13	DnaJ heat shock protein family (Hsp40) member C13	protein coding gene	no	ENST00000260818.10;ENST00000650455.1;ENST00000486798.5	12.114	9.347	8.182	0.775(7425)	0.905(635)	0.951(16538)	non tumor-specific	exon_skip	yes
UN_ABL2_LS0029	chr1:179133374|179229589:-	ABL2	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein coding gene	yes	.	0.510	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ZNF33B_LS0019	chr10:42593379|42593464:+	ZNF33B	zinc finger protein 33B	protein coding gene	no	.	2.143	0.441	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYO1B_LS006	chr2:191246367|191276887:+	MYO1B	myosin IB	protein coding gene	no	ENST00000438652.5;ENST00000438652.5	0.061	0.012	0.650	0.332(3182)	0.416(292)	0.049(855)	non tumor-specific	alt_5prime;exon_skip	yes
CNPPD1_LS003	chr2:219174207|219174778:-	CNPPD1	cyclin Pas1/PHO80 domain containing 1	protein coding gene	no	ENST00000360507.9;ENST00000409789.5;ENST00000453038.5;ENST00000451647.1	120.358	90.383	91.029	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HLA-B_LS0145	chr6:31271136|31355546:-	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	564.562	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
GLP2R_LS013	chr17:9862090|9870747:+	GLP2R	glucagon like peptide 2 receptor	protein coding gene	no	ENST00000574745.5;ENST00000262441.9	3.528	3.582	2.375	0.059(563)	0.259(182)	0.4(6946)	non tumor-specific	nAS	yes
TBR1_LS003	chr2:161418087|161418201:+	TBR1	T-box brain transcription factor 1	protein coding gene	no	ENST00000410035.1	0.191	0.026	0.845	0.022(209)	0.009(6)	0.006(102)	non tumor-specific	nAS	yes
UN_TUFM_LS0020	chr16:28843124|28844468:+	TUFM	Tu translation elongation factor, mitochondrial	protein coding gene	no	.	4.413	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCM7_LS0027	chr7:100095470|100095739:-	MCM7	minichromosome maintenance complex component 7	protein coding gene	no	.	58.028	2.455	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
SLC43A3_LS002	chr11:57409298|57409935:-	SLC43A3	solute carrier family 43 member 3	protein coding gene	no	ENST00000395123.6;ENST00000395124.5;ENST00000352187.5;ENST00000529554.5;ENST00000533524.5	86.405	49.161	59.510	0.985(9441)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_AL078590.3_LS0001	chr6:134521143|134523332:-	AL078590.3	-	lncRNA gene	no	.	1.630	0.171	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL627171.1_UP_LS0059	chr14:49853912|49862579:+	AL627171.1	-	lncRNA gene	no	.	6.118	0.533	0.000	0.029(279)	0.019(13)	0(0)	non tumor-specific	nAS	no
ITIH4_LS033	chr3:52826953|52827093:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000491663.5;ENST00000537897.5	29.502	129.390	12.576	0.473(4536)	0.541(380)	0.966(16796)	non tumor-specific	nAS	yes
FBXL13_LS018	chr7:102913215|102926274:-	FBXL13	F-box and leucine rich repeat protein 13	protein coding gene	yes	ENST00000379305.7;ENST00000448002.6;ENST00000436908.5;ENST00000313221.8;ENST00000456695.5;ENST00000379308.7;ENST00000455112.6;ENST00000477915.5	2.404	1.236	1.116	0.127(1216)	0.114(80)	0.473(8217)	non tumor-specific	nAS	yes
ZNF816_LS011	chr19:52956265|52962727:-	ZNF816	zinc finger protein 816	protein coding gene	no	ENST00000332302.8	0.119	0.001	0.623	0.009(91)	0.007(5)	0.003(46)	non tumor-specific	nAS	yes
UN_CASP3_LS0006	chr4:184635414|184638401:-	CASP3	caspase 3	protein coding gene	no	.	3.141	0.301	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GRSF1_LS0032	chr4:70839592|70839614:+	GRSF1	G-rich RNA sequence binding factor 1	protein coding gene	no	.	2.026	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NEURL1B_LS0007	chr5:172656641|172656698:-	NEURL1B	neuralized E3 ubiquitin protein ligase 1B	protein coding gene	no	.	34.129	12.916	0.000	0.094(904)	0.127(89)	0(0)	non tumor-specific	nAS	no
ENPP7P10_LS001	chr4:9079180|9131465:+	ENPP7P10	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10	pseudogene	no	ENST00000504828.1	1.091	0.000	0.698	0(1)	0(0)	0.003(57)	non tumor-specific	nAS	yes
UN_CLNS1A_LS0044	chr11:77629906|77637588:-	CLNS1A	chloride nucleotide-sensitive channel 1A	protein coding gene	no	.	3.621	0.341	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC5_LS0022	chr11:57690203|57690343:+	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	.	7.274	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC108515.1_UP_LS0007	chr4:97034689|97069829:+	AC108515.1	-	lncRNA gene	no	.	2.172	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0087	chr14:104942001|104945962:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.445	0.836	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ALPK1_LS0025	chr4:112361263|112377678:+	ALPK1	alpha kinase 1	protein coding gene	no	.	0.934	0.082	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
RNF212_LS023	chr4:1094014|1096765:-	RNF212	ring finger protein 212	protein coding gene	no	ENST00000333673.5	0.536	0.858	1.092	0.27(2585)	0.427(300)	0.388(6741)	non tumor-specific	alt_3prime	yes
UN_DNAH14_LS0003	chr1:224929835|224952674:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	.	1.300	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AL133370.1_LS001	chr14:68125409|68130066:-	AL133370.1	-	lncRNA gene	no	ENST00000554679.1	1.671	2.118	1.659	0.275(2632)	0.409(287)	0.131(2271)	non tumor-specific	nAS	yes
NFIA_LS010	chr1:61088680|61332512:+	NFIA	nuclear factor I A	protein coding gene	no	ENST00000371185.6	0.088	0.144	0.684	0.352(3373)	0.452(317)	0.134(2324)	non tumor-specific	exon_skip	yes
UN_FBXL13_LS0036	chr7:102934995|102939430:+	FBXL13	F-box and leucine rich repeat protein 13	protein coding gene	yes	.	19.546	0.515	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
CDC42BPG_LS032	chr11:64833977|64834266:-	CDC42BPG	CDC42 binding protein kinase gamma	protein coding gene	no	ENST00000342711.5	18.154	13.660	6.769	0.719(6890)	0.821(576)	0.679(11798)	non tumor-specific	nAS	yes
LINC02208_LS003	chr5:118472189|118472849:-	LINC02208	long intergenic non-protein coding RNA 2208	lncRNA gene	no	ENST00000506769.1	0.919	0.091	1.684	0.001(5)	0.001(1)	0.053(928)	non tumor-specific	nAS	yes
FHIT_LS005	chr3:59886287|59922346:-	FHIT	fragile histidine triad diadenosine triphosphatase	protein coding gene	yes	ENST00000466788.1	0.133	0.001	0.695	0.009(83)	0.007(5)	0.064(1111)	non tumor-specific	exon_skip;mutex_exons	yes
MLF1_LS019	chr3:158593421|158596862:+	MLF1	myeloid leukemia factor 1	protein coding gene	no	ENST00000497004.5	0.121	0.000	1.438	0(4)	0(0)	0.063(1096)	non tumor-specific	alt_5prime;exon_skip	yes
SAP30L_LS010	chr5:154451213|154453402:+	SAP30L	SAP30 like	protein coding gene	no	ENST00000297109.10;ENST00000297109.10;ENST00000297109.10	25.815	15.056	37.675	0.998(9558)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP003419.2_LS001	chr11:67353663|67353857:+	AP003419.2	-	lncRNA gene	no	ENST00000613900.1	0.332	0.210	0.779	0.222(2126)	0.392(275)	0.215(3741)	non tumor-specific	nAS	yes
RIC8B_LS026	chr12:106874567|106885904:+	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	ENST00000355478.6	1.534	0.716	0.947	0.015(142)	0.038(27)	0.444(7720)	non tumor-specific	exon_skip;mutex_exons	yes
PLEKHA2_LS019	chr8:38936050|38943789:+	PLEKHA2	pleckstrin homology domain containing A2	protein coding gene	no	ENST00000521746.5;ENST00000616927.4;ENST00000617275.4;ENST00000519640.5	18.945	15.612	5.743	0.881(8438)	0.954(670)	0.924(16057)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BGN_LS0147	chrX:153508469|153508673:-	BGN	biglycan	protein coding gene	no	.	21.721	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DXO_UP_LS0168	chr6:31999073|32031829:-	DXO	decapping exoribonuclease	protein coding gene	no	.	15.688	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
C2orf15_LS002	chr2:99142401|99147027:+	C2orf15	chromosome 2 open reading frame 15	protein coding gene	no	ENST00000409684.2	0.290	0.144	0.835	0.421(4035)	0.476(334)	0.235(4090)	non tumor-specific	exon_skip	yes
PHLDB1_LS049	chr11:118644174|118645356:+	PHLDB1	pleckstrin homology like domain family B member 1	protein coding gene	no	ENST00000361417.6;ENST00000600882.5;ENST00000356063.9;ENST00000614369.4;ENST00000527898.5;ENST00000534140.2;ENST00000392852.7;ENST00000524713.5;ENST00000529005.5;ENST00000361417.6;ENST00000600882.5;ENST00000356063.9;ENST00000614369.4;ENST00000527898.5;ENST00000534140.2;ENST00000392852.7;ENST00000524713.5;ENST00000529005.5	34.677	28.510	82.752	0.967(9267)	0.986(692)	0.955(16604)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC254633.1_UP_LS0002	chr1:12619427|12619798:-	AC254633.1	-	lncRNA gene	no	.	0.661	3.194	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLAMF6_LS0002	chr1:160496246|160523144:-	SLAMF6	SLAM family member 6	protein coding gene	no	.	2.176	0.303	0.000	0.007(68)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF84_LS028	chr12:133048848|133056957:+	ZNF84	zinc finger protein 84	protein coding gene	no	ENST00000543758.5	0.373	0.141	0.645	0.16(1532)	0.131(92)	0.072(1246)	non tumor-specific	alt_3prime	yes
DNMT3A_LS033	chr2:25249724|25252194:-	DNMT3A	DNA methyltransferase 3 alpha	protein coding gene	yes	ENST00000380746.8	0.358	0.112	0.700	0.436(4173)	0.165(116)	0.114(1980)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MINDY2_LS0012	chr15:58821819|58824697:+	MINDY2	MINDY lysine 48 deubiquitinase 2	protein coding gene	no	.	4.118	0.614	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
DPY30_LS024	chr2:32039492|32039593:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	ENST00000295066.3	2.374	1.144	3.541	0.984(9427)	0.99(695)	0.944(16415)	non tumor-specific	alt_5prime	yes
SEPT7-AS1_LS002	chr7:35755195|35758179:-	SEPT7-AS1	SEPTIN7 divergent transcript	lncRNA gene	no	ENST00000437235.7	0.620	0.361	0.972	0.181(1736)	0.382(268)	0.466(8100)	non tumor-specific	nAS	yes
RYR2_LS026	chr1:237548590|237550544:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	3.170	1.753	2.182	0.05(478)	0.125(88)	0.524(9112)	non tumor-specific	nAS	yes
UN_EIF4G1_LS0077	chr3:184323218|184323408:+	EIF4G1	eukaryotic translation initiation factor 4 gamma 1	protein coding gene	no	.	19.826	5.732	0.000	0.007(71)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AGBL3_LS0023	chr7:135045574|135076397:+	AGBL3	ATP/GTP binding protein like 3	protein coding gene	no	.	2.170	0.341	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GRM5-AS1_UP_LS0024	chr11:88400072|88423487:+	GRM5-AS1	GRM5 antisense RNA 1	lncRNA gene	no	.	2.409	0.243	0.000	0.013(121)	0.006(4)	0(0)	non tumor-specific	nAS	no
GOT1_LS007	chr10:99406849|99420624:-	GOT1	glutamic-oxaloacetic transaminase 1	protein coding gene	no	ENST00000370508.6	110.451	148.405	44.126	0.995(9537)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LHFPL1_UP_LS0003	chrX:112716445|112718893:-	LHFPL1	LHFPL tetraspan subfamily member 1	protein coding gene	no	.	1.586	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SNX2_LS015	chr5:122817373|122818818:+	SNX2	sorting nexin 2	protein coding gene	no	ENST00000379516.6;ENST00000514949.1;ENST00000510372.5;ENST00000506847.5;ENST00000514030.1	116.994	90.899	94.361	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
OBSCN_LS023	chr1:228268805|228271925:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000570156.6;ENST00000366707.9	3.462	1.572	1.410	0.038(362)	0.058(41)	0.553(9605)	non tumor-specific	exon_skip	yes
FAM21FP_LS009	chr10:45719955|45721699:-	FAM21FP	family with sequence similarity 21 member F, pseudogene	pseudogene	no	ENST00000608251.5	1.289	0.992	0.692	0.24(2299)	0.393(276)	0.107(1860)	non tumor-specific	nAS	yes
UN_PPIB_LS0028	chr15:64162154|64162493:-	PPIB	peptidylprolyl isomerase B	protein coding gene	no	.	108.217	5.958	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GOLGA8B_LS0032	chr15:34553045|34553797:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	.	2.676	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEL1L3_LS0017	chr4:25767830|25779076:-	SEL1L3	SEL1L family member 3	protein coding gene	no	.	7.062	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
NSUN5_LS013	chr7:73305097|73307394:-	NSUN5	NOP2/Sun RNA methyltransferase 5	protein coding gene	no	ENST00000428206.5;ENST00000471461.5;ENST00000252594.10;ENST00000438747.6;ENST00000310326.8;ENST00000428206.5;ENST00000471461.5;ENST00000252594.10;ENST00000438747.6;ENST00000310326.8	88.003	31.175	34.526	0.995(9535)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ACAP3_LS0013	chr1:1293911|1294090:-	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein coding gene	no	.	2.757	0.157	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AL139289.2_LS0010	chr1:43358108|43358419:-	AL139289.2	-	lncRNA gene	no	.	2.792	0.813	0.000	0.154(1472)	0.141(99)	0(0)	non tumor-specific	nAS	no
UN_MIR572_UP_LS0044	chr4:11120831|11141452:+	MIR572	microRNA 572	small non-coding RNA gene	no	.	1.477	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBC1D5_LS0074	chr3:17543465|17562019:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	.	1.663	0.161	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ACKR2_LS002	chr3:42809308|42809473:+	ACKR2	atypical chemokine receptor 2	protein coding gene	no	ENST00000565749.1	0.493	0.274	0.730	0.004(40)	0.009(6)	0.091(1588)	non tumor-specific	nAS	yes
UN_NFIC_LS0142	chr19:3465749|3465819:+	NFIC	nuclear factor I C	protein coding gene	no	.	8.405	0.466	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
CYSTM1_LS003	chr5:140175285|140194446:+	CYSTM1	cysteine rich transmembrane module containing 1	protein coding gene	no	ENST00000261811.5;ENST00000509589.5;ENST00000504227.5;ENST00000644078.1;ENST00000261811.5;ENST00000509589.5;ENST00000504227.5;ENST00000644078.1	135.516	208.329	147.338	0.993(9511)	0.983(690)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MS4A14_LS0009	chr11:60392786|60394946:+	MS4A14	membrane spanning 4-domains A14	protein coding gene	no	.	5.641	1.329	0.000	0.021(202)	0.031(22)	0(0)	non tumor-specific	nAS	no
ITGA9_LS021	chr3:37741819|37743926:+	ITGA9	integrin subunit alpha 9	protein coding gene	no	ENST00000264741.9	16.235	15.547	7.221	0.765(7325)	0.96(674)	0.871(15147)	non tumor-specific	nAS	yes
GAREM1_LS009	chr18:32288203|32310193:-	GAREM1	GRB2 associated regulator of MAPK1 subtype 1	protein coding gene	no	ENST00000399218.8;ENST00000269209.6;ENST00000578619.1	7.463	7.821	5.141	0.802(7680)	0.946(664)	0.893(15514)	non tumor-specific	exon_skip	yes
UN_NRGN_LS0028	chr11:124746330|124746773:-	NRGN	neurogranin	protein coding gene	no	.	1.244	0.543	0.000	0.044(423)	0.084(59)	0(0)	non tumor-specific	nAS	no
UN_IPPK_LS0026	chr9:92635308|92637191:-	IPPK	inositol-pentakisphosphate 2-kinase	protein coding gene	no	.	2.660	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PCBP1-AS1_LS113	chr2:70085624|70086343:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000432604.5	0.000	0.000	0.607	0.043(413)	0.053(37)	0.01(169)	non tumor-specific	nAS	yes
UN_ADAMTS1_LS0016	chr21:26842685|26842797:-	ADAMTS1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein coding gene	no	.	12.517	4.085	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
UN_SRRT_LS0007	chr7:100877664|100881285:+	SRRT	serrate, RNA effector molecule	protein coding gene	no	.	1.375	0.499	0.000	0.006(60)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_DCX_LS0002	chrX:111301743|111330904:-	DCX	doublecortin	protein coding gene	no	.	2.021	0.101	0.000	0.024(226)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PRICKLE3_LS003	chrX:49177202|49178272:-	PRICKLE3	prickle planar cell polarity protein 3	protein coding gene	no	.;.	0.731	2.387	0.000	0.003(29)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC024941.1_UP_LS0011	chr12:88599064|88600283:+	AC024941.1	-	lncRNA gene	no	.	1.169	1.044	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
TMEM45B_LS001	chr11:129815898|129827024:+	TMEM45B	transmembrane protein 45B	protein coding gene	no	ENST00000525709.5	0.207	0.107	0.835	0.165(1582)	0.262(184)	0.082(1428)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
IL16_LS029	chr15:81297078|81299380:+	IL16	interleukin 16	protein coding gene	no	ENST00000360547.9;ENST00000394660.6;ENST00000302987.8;ENST00000560115.5;ENST00000394652.6	3.807	3.697	11.917	0.869(8326)	0.946(664)	0.946(16439)	non tumor-specific	alt_3prime	yes
MAMDC2_LS009	chr9:70143819|70168702:+	MAMDC2	MAM domain containing 2	protein coding gene	no	ENST00000377182.4	8.943	21.047	21.796	0.442(4237)	0.895(628)	0.859(14923)	non tumor-specific	nAS	yes
DNAH1_LS057	chr3:52385447|52386160:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	ENST00000486752.5;ENST00000420323.6;ENST00000488988.5	2.191	1.137	7.900	0.443(4247)	0.484(340)	0.967(16812)	non tumor-specific	nAS	yes
UN_DMPK_LS0044	chr19:45778638|45779243:+	DMPK	DM1 protein kinase	protein coding gene	no	.	3.267	0.187	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNTNAP1_LS012	chr17:42690207|42690739:+	CNTNAP1	contactin associated protein 1	protein coding gene	no	ENST00000264638.8;ENST00000591662.1;ENST00000585534.1	4.674	10.074	15.259	0.866(8294)	0.869(610)	0.952(16540)	non tumor-specific	alt_3prime	yes
UN_MFSD8_LS0007	chr4:127939997|127940866:-	MFSD8	major facilitator superfamily domain containing 8	protein coding gene	no	.	0.944	0.399	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SMARCA2_LS077	chr9:2159909|2161001:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000635590.1;ENST00000634989.1;ENST00000636367.1	0.167	0.201	1.099	0.331(3169)	0.523(367)	0.504(8768)	non tumor-specific	alt_3prime;exon_skip	yes
DAAM1_LS023	chr14:59353964|59355165:+	DAAM1	dishevelled associated activator of morphogenesis 1	protein coding gene	no	ENST00000360909.7;ENST00000395125.1;ENST00000554459.5	11.753	12.767	15.021	0.945(9054)	0.983(690)	0.961(16699)	non tumor-specific	exon_skip	yes
INS-IGF2_LS004	chr11:2135529|2147566:-	INS-IGF2	INS-IGF2 readthrough	protein coding gene	no	ENST00000356578.8	0.458	9.998	1.156	0.118(1135)	0.13(91)	0.135(2348)	non tumor-specific	nAS	yes
LINC01189_LS002	chr9:62518455|62521679:+	LINC01189	long intergenic non-protein coding RNA 1189	lncRNA gene	no	ENST00000428440.1	0.390	0.073	0.677	0.072(694)	0.132(93)	0.006(109)	non tumor-specific	nAS	yes
AC012668.2_LS001	chr2:215530534|215531489:-	AC012668.2	-	lncRNA gene	no	ENST00000431727.2	1.536	0.000	0.578	0(1)	0(0)	0.002(32)	non tumor-specific	nAS	yes
VPS13D_LS079	chr1:12415221|12416660:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4;ENST00000011700.10;ENST00000646411.1;ENST00000543710.5;ENST00000645371.1;ENST00000476045.5;ENST00000481484.1	35.176	33.975	40.993	0.981(9400)	0.996(699)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_AL353743.2_UP_LS0007	chr9:86015776|86033282:-	AL353743.2	-	lncRNA gene	no	.	10.505	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0472	chr14:104949436|104952902:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	0.800	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_LPIN1_LS0039	chr2:11767858|11771376:+	LPIN1	lipin 1	protein coding gene	no	.	3.016	0.219	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
GSTZ1_LS029	chr14:77330359|77331069:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000216465.9;ENST00000361389.8;ENST00000554279.5;ENST00000557639.5;ENST00000349555.7;ENST00000556627.5;ENST00000557053.5;ENST00000393734.5;ENST00000555093.1;ENST00000553586.5;ENST00000554381.1;ENST00000555208.1	59.817	42.766	31.861	0.967(9266)	0.979(687)	0.979(17016)	non tumor-specific	alt_3prime	yes
UN_AL591485.1_LS0013	chr6:8493778|8498514:+	AL591485.1	-	no	no	.	1.234	0.157	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NAP1L1_LS0025	chr12:76055090|76059798:-	NAP1L1	nucleosome assembly protein 1 like 1	protein coding gene	no	.	21.825	2.214	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
DENND5B_LS024	chr12:31499671|31500393:-	DENND5B	DENN domain containing 5B	protein coding gene	no	ENST00000536562.5	0.115	0.048	0.738	0.059(562)	0.034(24)	0.058(1016)	non tumor-specific	exon_skip	yes
ERCC6_LS016	chr10:49483516|49488158:-	ERCC6	ERCC excision repair 6, chromatin remodeling factor	protein coding gene	no	ENST00000623073.3	0.171	0.001	0.662	0.012(116)	0.017(12)	0.086(1492)	non tumor-specific	nAS	yes
PTBP1_LS035	chr19:810620|810694:+	PTBP1	polypyrimidine tract binding protein 1	protein coding gene	no	ENST00000356948.10;ENST00000635647.1;ENST00000627714.2;ENST00000349038.8;ENST00000586944.5;ENST00000394601.8;ENST00000350092.8;ENST00000621737.4;ENST00000585932.5;ENST00000585856.2	499.910	227.842	202.395	0.995(9533)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
VAV3_LS023	chr1:107683533|107688381:-	VAV3	vav guanine nucleotide exchange factor 3	protein coding gene	yes	ENST00000370056.8;ENST00000527011.5;ENST00000415432.6;ENST00000343258.8;ENST00000479977.6;ENST00000469325.5;ENST00000490388.2	17.489	23.346	3.801	0.822(7879)	0.893(627)	0.824(14315)	non tumor-specific	exon_skip;mutex_exons	yes
LINC01291_LS001	chr2:74918459|74931418:+	LINC01291	long intergenic non-protein coding RNA 1291	lncRNA gene	no	ENST00000435984.1	0.345	0.065	0.602	0.064(611)	0.009(6)	0.007(124)	non tumor-specific	nAS	yes
UN_CCSER1_LS0017	chr4:90309608|90310538:+	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	.	7.879	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SUCLG2-AS1_LS0001	chr3:67655074|67668213:+	SUCLG2-AS1	SUCLG2 antisense RNA 1 (head to head)	lncRNA gene	no	.	0.993	0.205	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	nAS	no
RGS6_LS002	chr14:71933302|71964772:+	RGS6	regulator of G protein signaling 6	protein coding gene	no	ENST00000553530.5;ENST00000554474.5;ENST00000556437.5	0.333	0.197	1.149	0.117(1119)	0.201(141)	0.28(4863)	non tumor-specific	nAS	yes
ADIPOR1_LS008	chr1:202946610|202948304:-	ADIPOR1	adiponectin receptor 1	protein coding gene	no	ENST00000340990.9;ENST00000367254.7;ENST00000417068.5;ENST00000426229.1	255.858	163.641	94.476	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ACYP1_LS0005	chr14:75056560|75063470:-	ACYP1	acylphosphatase 1	protein coding gene	no	.	4.459	0.749	0.000	0.222(2124)	0.078(55)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ALDH3A1_LS012	chr17:19742212|19742545:-	ALDH3A1	aldehyde dehydrogenase 3 family member A1	protein coding gene	no	ENST00000468746.5;ENST00000395555.7;ENST00000479677.6;ENST00000494157.6;ENST00000225740.10;ENST00000444455.5;ENST00000457500.6;ENST00000439102.6;ENST00000485472.3;ENST00000426645.2	18.383	42.054	2.404	0.63(6039)	0.821(576)	0.704(12229)	non tumor-specific	exon_skip	yes
UN_AC068152.1_LS0022	chr17:47082354|47099835:-	AC068152.1	-	lncRNA gene	no	.	0.976	0.114	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CHST12_LS0005	chr7:2404216|2432563:+	CHST12	carbohydrate sulfotransferase 12	protein coding gene	no	.	1.145	0.436	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
XRRA1_LS016	chr11:74851203|74862981:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	.;.	1.493	0.086	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC140134.1_UP_LS0019	chr5:70197390|70219918:-	AC140134.1	-	pseudogene	no	.	1.733	0.346	0.000	0.058(557)	0.104(73)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0040	chr6:112591010|112593102:+	AL360085.1	-	pseudogene	no	.	1.537	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SPATS2_LS031	chr12:49490731|49494741:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000550997.5;ENST00000549412.5;ENST00000553127.5;ENST00000321898.10;ENST00000552918.5;ENST00000549045.5;ENST00000552557.5;ENST00000552655.1	29.948	14.175	13.071	0.98(9386)	0.98(688)	0.969(16836)	non tumor-specific	exon_skip	yes
UN_AC019118.1_UP_LS0009	chr2:2682179|2692625:+	AC019118.1	-	lncRNA gene	no	.	2.877	0.198	0.000	0.01(95)	0.001(1)	0(0)	non tumor-specific	nAS	no
HMGCS1_LS004	chr5:43294162|43294691:-	HMGCS1	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein coding gene	no	ENST00000325110.10;ENST00000433297.2;ENST00000508319.1	81.792	67.957	38.770	0.993(9510)	0.997(700)	0.978(17001)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC098820.3_LS0002	chr2:216486882|216487126:-	AC098820.3	-	lncRNA gene	no	.	2.698	0.180	0.000	0.04(384)	0.014(10)	0(0)	non tumor-specific	nAS	no
LIG1_LS019	chr19:48136125|48137008:-	LIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	no	ENST00000263274.11;ENST00000536218.5;ENST00000594759.5;ENST00000427526.6;ENST00000594067.5;ENST00000613670.4;ENST00000601091.5;ENST00000597901.1;ENST00000542460.5	35.360	9.598	10.173	0.99(9485)	0.991(696)	0.972(16897)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC046144.1_UP_LS0051	chr3:104907465|104909874:-	AC046144.1	-	pseudogene	no	.	4.225	0.894	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
TNFSF10_LS012	chr3:172518465|172523253:-	TNFSF10	TNF superfamily member 10	protein coding gene	no	ENST00000466777.1	0.054	0.045	1.118	0.416(3983)	0.48(337)	0.402(6987)	non tumor-specific	exon_skip;intron_retention	yes
UN_GRB7_LS0018	chr17:39743470|39744118:+	GRB7	growth factor receptor bound protein 7	protein coding gene	no	.	8.775	1.412	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PPARGC1B_LS002	chr5:149730420|149820433:+	PPARGC1B	PPARG coactivator 1 beta	protein coding gene	no	ENST00000360453.8;ENST00000394320.7;ENST00000309241.9	1.875	1.178	1.388	0.33(3160)	0.353(248)	0.582(10121)	non tumor-specific	exon_skip	yes
UN_TMOD1_LS0013	chr9:97587102|97591291:+	TMOD1	tropomodulin 1	protein coding gene	no	.	2.224	0.097	0.000	0.02(194)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NAA60_LS0014	chr16:3485504|3485616:-	NAA60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein coding gene	no	.	0.650	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NBPF20_UP_LS0030	chr1:145423431|145425353:-	NBPF20	NBPF member 20	protein coding gene	no	.	1.481	0.073	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL359644.1_LS004	chr9:121375325|121440376:+	AL359644.1	-	lncRNA gene	no	ENST00000440807.1	0.450	0.056	0.662	0.005(45)	0.004(3)	0.018(317)	non tumor-specific	nAS	yes
UBA6_LS018	chr4:67641228|67644698:-	UBA6	ubiquitin like modifier activating enzyme 6	protein coding gene	no	ENST00000322244.9;ENST00000505673.2	16.524	8.400	12.619	0.912(8739)	0.96(674)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGAP31_LS005	chr3:119380986|119382292:+	ARHGAP31	Rho GTPase activating protein 31	protein coding gene	no	ENST00000264245.8;ENST00000482743.1	11.684	12.207	7.123	0.745(7138)	0.912(640)	0.936(16272)	non tumor-specific	nAS	yes
UN_MIR663AHG_UP_LS0006	chr20:28559671|28563830:-	MIR663AHG	MIR663A host gene	lncRNA gene	no	.	2.048	1.469	0.000	0.043(410)	0.097(68)	0(0)	non tumor-specific	nAS	no
UN_AC087500.2_LS0006	chr17:5240959|5241000:-	AC087500.2	-	lncRNA gene	no	.	3.528	1.090	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NLGN2_LS0001	chr17:7405610|7407615:+	NLGN2	neuroligin 2	protein coding gene	no	.	2.980	1.200	0.000	0.024(234)	0.053(37)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DOP1B_LS0075	chr21:36293722|36293857:-	DOP1B	DOP1 leucine zipper like protein B	protein coding gene	no	.	1.129	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AC005808.1_LS002	chr20:53617998|53634530:+	AC005808.1	-	lncRNA gene	no	ENST00000444112.1	0.445	0.084	0.657	0.004(41)	0.001(1)	0.002(36)	non tumor-specific	nAS	yes
MISP_LS004	chr19:760039|761625:+	MISP	mitotic spindle positioning	protein coding gene	no	ENST00000215582.7	112.561	105.425	1.921	0.703(6733)	0.783(550)	0.441(7663)	non tumor-specific	nAS	yes
TDG_LS021	chr12:103983218|103983295:+	TDG	thymine DNA glycosylase	protein coding gene	no	ENST00000392872.7;ENST00000266775.13;ENST00000544861.5;ENST00000537100.5	19.417	10.192	7.718	0.962(9215)	0.989(694)	0.954(16575)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRMT12_LS003	chr8:124451257|124462027:+	TRMT12	tRNA methyltransferase 12 homolog	protein coding gene	no	ENST00000521443.1	0.133	0.126	0.691	0.229(2198)	0.265(186)	0.151(2623)	non tumor-specific	nAS	yes
CDHR5_LS030	chr11:620164|620296:-	CDHR5	cadherin related family member 5	protein coding gene	no	ENST00000397542.6;ENST00000358353.7;ENST00000531177.5;ENST00000349570.11;ENST00000531899.5	44.840	93.229	1.213	0.275(2638)	0.368(258)	0.266(4627)	non tumor-specific	alt_3prime	yes
TTN_LS364	chr2:178784351|178785620:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5;ENST00000360870.9	5.418	14.340	7.630	0.01(99)	0.027(19)	0.166(2894)	non tumor-specific	nAS	yes
UN_AP001330.4_UP_LS0003	chr8:101315516|101316519:+	AP001330.4	-	pseudogene	no	.	9.912	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SSR3_LS012	chr3:156553781|156554737:-	SSR3	signal sequence receptor subunit 3	protein coding gene	no	ENST00000463503.5	0.349	0.138	0.649	0.25(2396)	0.222(156)	0.109(1897)	non tumor-specific	alt_5prime	yes
UN_C12orf43_UP_LS0001	chr12:121019030|121019845:-	C12orf43	chromosome 12 open reading frame 43	protein coding gene	no	.	1.135	0.762	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RN7SKP184_UP_LS0001	chr20:52972316|52972618:+	RN7SKP184	RN7SK pseudogene 184	small non-coding RNA gene	no	.	0.883	0.235	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PPP1R10_LS0021	chr6:30602244|30602335:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	.	22.628	12.016	0.000	0.108(1036)	0.108(76)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_RPL10AP3_UP_LS0011	chr8:35056170|35094263:-	RPL10AP3	ribosomal protein L10a pseudogene 3	pseudogene	no	.	3.166	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GNPNAT1_LS0020	chr14:52778458|52778758:-	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	.	2.699	0.617	0.000	0.006(56)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_EXOSC4_LS0007	chr8:144079534|144079943:+	EXOSC4	exosome component 4	protein coding gene	no	.	1.986	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ICK_LS007	chr6:53016250|53018330:-	ICK	ciliogenesis associated kinase 1	protein coding gene	no	ENST00000350082.9;ENST00000356971.3	11.715	9.825	5.956	0.88(8436)	0.956(671)	0.933(16217)	non tumor-specific	exon_skip	yes
CELSR3_LS009	chr3:48643677|48644716:-	CELSR3	cadherin EGF LAG seven-pass G-type receptor 3	protein coding gene	no	.;.	1.339	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LIMS2_LS030	chr2:127643550|127644069:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	ENST00000409754.5	0.031	0.025	1.197	0.057(547)	0.148(104)	0.437(7597)	non tumor-specific	exon_skip;intron_retention	yes
FAM122C_LS035	chrX:134849228|134852800:+	FAM122C	family with sequence similarity 122C	protein coding gene	no	ENST00000645433.1;ENST00000460216.5	0.390	0.228	1.288	0.219(2102)	0.191(134)	0.619(10755)	non tumor-specific	exon_skip;mutex_exons	yes
MRPL45_LS002	chr17:38298626|38299351:+	MRPL45	mitochondrial ribosomal protein L45	protein coding gene	no	ENST00000619548.1;ENST00000613675.4	74.698	45.189	28.780	0.996(9541)	0.997(700)	0.979(17010)	non tumor-specific	exon_skip	yes
ACVRL1_LS013	chr12:51921827|51923140:+	ACVRL1	activin A receptor like type 1	protein coding gene	no	ENST00000550084.1	0.215	0.052	0.668	0.636(6098)	0.707(496)	0.041(704)	non tumor-specific	intron_retention	yes
AC137579.2_LS001	chr8:37600727|37602794:-	AC137579.2	-	lncRNA gene	no	ENST00000517714.1	0.525	0.000	0.599	0(4)	0(0)	0.006(112)	non tumor-specific	nAS	yes
PTPRH_LS031	chr19:55206976|55207166:-	PTPRH	protein tyrosine phosphatase receptor type H	protein coding gene	no	ENST00000588559.5;ENST00000588370.5	1.164	1.602	1.182	0.435(4163)	0.293(206)	0.3(5206)	non tumor-specific	alt_3prime;alt_5prime	yes
MAP4K5_LS018	chr14:50446121|50447414:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000554990.5;ENST00000013125.8	37.979	24.989	38.419	0.939(8994)	0.973(683)	0.978(16991)	non tumor-specific	alt_5prime	yes
CRIPT_LS003	chr2:46618838|46619627:+	CRIPT	CXXC repeat containing interactor of PDZ3 domain	protein coding gene	no	ENST00000486447.1;ENST00000238892.3	85.660	43.905	35.173	0.996(9547)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime	yes
AC069079.1_LS001	chr10:51302824|51306569:+	AC069079.1	-	lncRNA gene	no	ENST00000419889.1	1.377	0.000	0.713	0(1)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_SERGEF_LS0020	chr11:17878244|17918733:-	SERGEF	secretion regulating guanine nucleotide exchange factor	protein coding gene	no	.	0.655	0.192	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_OR7E108P_UP_LS0014	chr9:90957424|90982986:-	OR7E108P	olfactory receptor family 7 subfamily E member 108 pseudogene	pseudogene	no	.	1.984	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NCF1C_LS0003	chr7:75157965|75160659:-	NCF1C	neutrophil cytosolic factor 1C pseudogene	pseudogene	no	.	4.287	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CDKN2B-AS1_LS010	chr9:22049228|22077679:+	CDKN2B-AS1	CDKN2B antisense RNA 1	lncRNA gene	no	ENST00000583719.5	0.085	0.006	0.674	0.063(604)	0.004(3)	0.012(202)	non tumor-specific	nAS	yes
ACADVL_LS010	chr17:7220197|7220766:+	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	ENST00000577857.5;ENST00000577857.5	0.009	0.009	0.827	0.606(5803)	0.744(522)	0.4(6960)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL390334.1_LS0032	chr14:27566853|27589888:+	AL390334.1	-	pseudogene	no	.	4.763	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CDK6_LS005	chr7:92725793|92774696:-	CDK6	cyclin dependent kinase 6	protein coding gene	yes	ENST00000265734.8;ENST00000424848.2	21.836	4.342	4.282	0.707(6776)	0.815(572)	0.9(15639)	non tumor-specific	exon_skip	yes
MPHOSPH8_LS008	chr13:19659289|19661698:+	MPHOSPH8	M-phase phosphoprotein 8	protein coding gene	no	ENST00000361479.9	36.772	30.991	25.755	0.984(9429)	0.996(699)	0.979(17012)	non tumor-specific	exon_skip	yes
UN_ALCAM_UP_LS0001	chr3:104443263|104502706:+	ALCAM	activated leukocyte cell adhesion molecule	protein coding gene	no	.	4.952	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
WDPCP_LS026	chr2:63492940|63571375:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000417238.5	1.110	0.647	0.851	0.091(873)	0.107(75)	0.384(6677)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PEX26_LS0073	chr22:18095311|18121479:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	1.303	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL359510.1_UP_LS0001	chr1:228148893|228151794:-	AL359510.1	-	pseudogene	no	.	7.013	1.687	0.000	0.024(228)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_GOLGA3_LS0049	chr12:132780914|132784164:-	GOLGA3	golgin A3	protein coding gene	no	.	1.458	0.124	0.000	0.007(63)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ATOH8_LS0016	chr2:85781166|85784603:+	ATOH8	atonal bHLH transcription factor 8	protein coding gene	no	.	2.526	1.149	0.000	0.006(57)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC243960.5_UP_LS0003	chr19:41641858|41663211:-	AC243960.5	-	pseudogene	no	.	2.263	1.758	0.000	0.009(83)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_TAF10_LS0046	chr11:6611002|6611189:-	TAF10	TATA-box binding protein associated factor 10	protein coding gene	no	.	40.732	3.542	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
EIF4G3_LS033	chr1:20942330|20950003:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000264211.12;ENST00000602326.5;ENST00000400422.6;ENST00000634879.1;ENST00000356916.7	15.328	12.563	22.398	0.943(9039)	0.984(691)	0.978(17000)	non tumor-specific	exon_skip	yes
LINC00944_LS005	chr12:126732407|126746261:-	LINC00944	long intergenic non-protein coding RNA 944	lncRNA gene	no	ENST00000540684.5	3.632	0.561	0.860	0.252(2418)	0.064(45)	0.247(4295)	non tumor-specific	nAS	yes
LCA5L_LS014	chr21:39429211|39438684:-	LCA5L	lebercilin LCA5 like	protein coding gene	no	ENST00000438404.5;ENST00000468009.6	0.161	0.078	0.663	0.04(382)	0.066(46)	0.013(221)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CTSS_LS0023	chr1:150750165|150751781:-	CTSS	cathepsin S	protein coding gene	no	.	85.566	8.851	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SGO1-AS1_LS012	chr3:21034443|21041752:+	SGO1-AS1	SGO1 antisense RNA 1	lncRNA gene	no	ENST00000634837.1	1.767	0.000	0.693	0.001(8)	0(0)	0.028(484)	non tumor-specific	nAS	yes
UN_AP003781.1_UP_LS0002	chr11:96077246|96506998:+	AP003781.1	-	lncRNA gene	no	.	3.581	4.262	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_STON1-GTF2A1L_UP_LS0003	chr2:48515834|48529880:+	STON1-GTF2A1L	STON1-GTF2A1L readthrough	protein coding gene	no	.	0.542	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDX51_UP_LS0008	chr12:132159485|132159649:-	DDX51	DEAD-box helicase 51	protein coding gene	no	.	1.672	0.196	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_APPL1_LS0011	chr3:57247477|57248202:+	APPL1	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1	protein coding gene	no	.	2.822	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_WNT3_LS0013	chr17:46770048|46772137:-	WNT3	Wnt family member 3	protein coding gene	yes	.	1.223	0.503	0.000	0.094(904)	0.071(50)	0(0)	non tumor-specific	nAS	no
UN_C2orf27A_UP_LS0003	chr2:131613103|131648254:+	C2orf27A	chromosome 2 open reading frame 27A	pseudogene	no	.	1.293	0.695	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZNF558_LS0030	chr19:8831401|8831564:-	ZNF558	zinc finger protein 558	protein coding gene	no	.	0.836	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBR2_LS0013	chr6:42607657|42607690:+	UBR2	ubiquitin protein ligase E3 component n-recognin 2	protein coding gene	no	.	1.811	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TC2N_LS021	chr14:91813825|91836371:-	TC2N	tandem C2 domains, nuclear	protein coding gene	no	ENST00000360594.9;ENST00000556018.5;ENST00000360594.9;ENST00000556018.5	4.431	4.477	4.245	0.72(6897)	0.87(611)	0.729(12666)	non tumor-specific	alt_5prime;exon_skip	yes
TTI2_LS007	chr8:33507321|33509746:-	TTI2	TELO2 interacting protein 2	protein coding gene	no	ENST00000519356.1;ENST00000613904.1;ENST00000360742.9;ENST00000431156.6	19.663	10.070	13.480	0.992(9505)	0.996(699)	0.978(16999)	non tumor-specific	exon_skip	yes
UN_CHD9_LS0011	chr16:53055077|53141179:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	1.480	0.217	0.000	0.004(38)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RPS6KA3_LS0033	chrX:20240605|20266564:-	RPS6KA3	ribosomal protein S6 kinase A3	protein coding gene	no	.	0.681	0.390	0.711	0.292(2799)	0.397(279)	0.242(4203)	non tumor-specific	alt_3prime;exon_skip	no
UN_CRAT_LS0041	chr9:129104306|129107606:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	.	22.155	0.048	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_CREB3L3_LS0048	chr19:4172369|4172426:-	CREB3L3	cAMP responsive element binding protein 3 like 3	protein coding gene	no	.	5.858	9.617	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
CCDC74A_LS021	chr2:131532781|131532864:+	CCDC74A	coiled-coil domain containing 74A	protein coding gene	no	ENST00000295171.10;ENST00000409856.7;ENST00000434330.1	28.968	15.804	11.021	0.932(8927)	0.926(650)	0.927(16118)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PTPRN2_LS011	chr7:157656551|157682725:-	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	ENST00000389413.7;ENST00000409483.5;ENST00000389416.8;ENST00000389418.8	26.645	19.546	2.743	0.396(3794)	0.483(339)	0.672(11683)	non tumor-specific	exon_skip	yes
UN_CACNA2D1_LS0013	chr7:81997250|81999079:-	CACNA2D1	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein coding gene	no	.	1.719	0.246	0.000	0.015(143)	0.009(6)	0(0)	non tumor-specific	nAS	no
ZCCHC8_LS018	chr12:122490567|122490935:-	ZCCHC8	zinc finger CCHC-type containing 8	protein coding gene	no	ENST00000536663.5	0.221	0.223	0.796	0.037(358)	0.046(32)	0.372(6465)	non tumor-specific	exon_skip	yes
UN_AC068234.1_LS0060	chr17:47324717|47326226:+	AC068234.1	-	protein coding gene	no	.	0.601	0.000	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPD52L2_LS024	chr20:63882820|63889190:+	TPD52L2	TPD52 like 2	protein coding gene	no	ENST00000369927.8;ENST00000346249.8;ENST00000348257.9;ENST00000369927.8;ENST00000346249.8;ENST00000348257.9	167.103	87.334	91.787	0.996(9542)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ACAT1_LS002	chr11:108121893|108127886:+	ACAT1	acetyl-CoA acetyltransferase 1	protein coding gene	no	ENST00000531853.5	0.075	0.021	0.686	0.003(32)	0.006(4)	0.007(116)	non tumor-specific	exon_skip	yes
SF3A3_LS013	chr1:37979533|37980586:-	SF3A3	splicing factor 3a subunit 3	protein coding gene	no	ENST00000373019.4;ENST00000489537.5;ENST00000461869.5;ENST00000470585.5;ENST00000488934.1	90.704	48.644	56.971	0.998(9563)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
AC004922.1_LS007	chr7:99335484|99338181:+	AC004922.1	-	protein coding gene	no	ENST00000441989.6	0.010	0.000	0.672	0.034(321)	0.009(6)	0.107(1860)	non tumor-specific	alt_5prime;exon_skip	yes
ENPP6_LS005	chr4:184117900|184124161:-	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein coding gene	no	ENST00000296741.6;ENST00000512353.1	3.321	5.356	1.925	0.123(1180)	0.342(240)	0.371(6457)	non tumor-specific	nAS	yes
UN_ZNF558_LS0013	chr19:8821635|8822003:-	ZNF558	zinc finger protein 558	protein coding gene	no	.	2.636	1.370	0.000	0.126(1207)	0.113(79)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC107057.1_LS0004	chr2:5550193|5555989:-	AC107057.1	-	lncRNA gene	no	.	1.918	0.566	0.000	0.006(62)	0.044(31)	0(0)	non tumor-specific	nAS	no
TNKS2_LS011	chr10:91831181|91833853:+	TNKS2	tankyrase 2	protein coding gene	no	ENST00000371627.4	28.457	23.941	17.064	0.91(8717)	0.976(685)	0.972(16892)	non tumor-specific	nAS	yes
UN_SLC35E2A_LS0024	chr1:1731162|1739873:+	SLC35E2A	solute carrier family 35 member E2A	protein coding gene	no	.	1.364	0.363	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_FAM86B3P_LS0010	chr8:8237275|8238310:+	FAM86B3P	family with sequence similarity 86 member B3, pseudogene	pseudogene	no	.	2.186	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
MGAT4C_LS014	chr12:86001581|86049674:-	MGAT4C	MGAT4 family member C	protein coding gene	no	.;.	3.317	0.346	0.000	0.023(222)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CIDEB_LS010	chr14:24308830|24310407:-	CIDEB	cell death inducing DFFA like effector b	protein coding gene	no	ENST00000336557.9	0.849	0.533	1.541	0.615(5896)	0.816(573)	0.666(11584)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC073094.1_UP_LS0001	chr7:1150982|1250525:+	AC073094.1	-	lncRNA gene	no	.	0.942	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC069444.2_LS0006	chr3:119730377|119737366:+	AC069444.2	-	protein coding gene	no	.	1.010	0.280	0.000	0.018(171)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RSU1P2_LS002	chr10:45106730|45106997:-	RSU1P2	Ras suppressor protein 1 pseudogene 2	pseudogene	no	ENST00000448600.5	1.364	0.000	0.731	0(2)	0(0)	0.032(562)	non tumor-specific	nAS	yes
NSDHL_LS005	chrX:152846432|152850265:+	NSDHL	NAD(P) dependent steroid dehydrogenase-like	protein coding gene	no	ENST00000440023.5;ENST00000370274.7;ENST00000432467.1	46.123	26.869	29.511	0.994(9523)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_ARMC2_LS0020	chr6:108899792|108910899:+	ARMC2	armadillo repeat containing 2	protein coding gene	no	.	1.162	0.341	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_AC103808.3_UP_LS0004	chr18:76357855|76358498:-	AC103808.3	-	lncRNA gene	no	.	3.080	0.612	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_HNRNPA1L2_UP_LS0003	chr13:52583188|52621989:+	HNRNPA1L2	heterogeneous nuclear ribonucleoprotein A1 like 2	protein coding gene	no	.	0.684	0.041	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MUC20_LS0061	chr3:195733321|195734756:+	MUC20	mucin 20, cell surface associated	protein coding gene	no	.	6.095	0.684	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
CACNA2D4_LS034	chr12:1875337|1878315:-	CACNA2D4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein coding gene	no	ENST00000382722.9;ENST00000280663.12;ENST00000444595.6;ENST00000588077.5;ENST00000586184.5;ENST00000585708.5;ENST00000585732.1	5.073	0.000	0.811	0.008(81)	0(0)	0.113(1972)	non tumor-specific	exon_skip	yes
ECI1_LS003	chr16:2243224|2243369:-	ECI1	enoyl-CoA delta isomerase 1	protein coding gene	no	ENST00000562238.5	4.335	8.688	3.695	0.508(4871)	0.405(284)	0.946(16446)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	yes
SBF2-AS1_LS006	chr11:9779942|9780376:+	SBF2-AS1	SBF2 antisense RNA 1	lncRNA gene	no	ENST00000650092.1;ENST00000525636.5	1.218	0.261	0.769	0.081(777)	0.095(67)	0.271(4713)	non tumor-specific	nAS	yes
UN_SUGT1_LS0007	chr13:52659249|52661478:+	SUGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein coding gene	no	.	7.522	2.032	0.000	0.067(641)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF217_LS004	chr20:53569264|53575727:-	ZNF217	zinc finger protein 217	protein coding gene	yes	ENST00000437222.1;ENST00000437222.1	2.372	0.934	2.812	0.856(8206)	0.842(591)	0.822(14295)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TEP1_LS0057	chr14:20408178|20408269:+	TEP1	telomerase associated protein 1	protein coding gene	no	.	3.042	0.278	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM25_LS024	chr14:73106081|73106196:+	RBM25	RNA binding motif protein 25	protein coding gene	no	ENST00000261973.11;ENST00000527432.5;ENST00000532683.5;ENST00000528081.5	115.230	63.022	153.864	0.992(9509)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
CSMD3_LS034	chr8:112352534|112380352:-	CSMD3	CUB and Sushi multiple domains 3	protein coding gene	no	ENST00000343508.7;ENST00000297405.9;ENST00000339701.7;ENST00000455883.2	4.037	0.268	1.354	0.046(443)	0.006(4)	0.112(1949)	non tumor-specific	nAS	yes
UN_FUBP1_LS0020	chr1:77963630|77963697:+	FUBP1	far upstream element binding protein 1	protein coding gene	yes	.	1.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SLIT2_LS018	chr4:20523903|20524014:+	SLIT2	slit guidance ligand 2	protein coding gene	yes	ENST00000503823.5;ENST00000504154.5;ENST00000622093.4;ENST00000273739.9;ENST00000503837.5	5.776	7.347	4.397	0.453(4338)	0.785(551)	0.795(13827)	non tumor-specific	nAS	yes
UN_CDH12P3_UP_LS0008	chr5:70090528|70120305:+	CDH12P3	cadherin 12 pseudogene 3	pseudogene	no	.	2.064	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LNCTAM34A_LS0024	chr1:9183987|9191393:+	LNCTAM34A	long non coding transcriptional activator of miR34a	lncRNA gene	no	.	2.850	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
STX16_LS011	chr20:58652138|58667490:+	STX16	syntaxin 16	protein coding gene	no	ENST00000496003.5;ENST00000358029.8	0.247	0.290	5.532	0.851(8150)	0.856(601)	0.939(16329)	non tumor-specific	alt_5prime	yes
ERVK13-1_LS004	chr16:2663407|2673283:-	ERVK13-1	endogenous retrovirus group K13 member 1	lncRNA gene	no	ENST00000564340.1	0.091	0.097	0.772	0.145(1394)	0.107(75)	0.079(1368)	non tumor-specific	nAS	yes
UN_RTL8B_UP_LS0002	chrX:135026129|135032332:-	RTL8B	retrotransposon Gag like 8B	protein coding gene	no	.	0.554	0.053	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_IPO5_LS0018	chr13:98018704|98019584:+	IPO5	importin 5	protein coding gene	no	.	22.944	7.445	0.000	0.042(404)	0.051(36)	0(0)	non tumor-specific	alt_3prime	no
NXF4_LS011	chrX:102565765|102566168:+	NXF4	nuclear RNA export factor 4 pseudogene	pseudogene	no	ENST00000360035.6;ENST00000416098.1	1.655	0.000	0.775	0(3)	0(0)	0.031(538)	non tumor-specific	nAS	yes
ADAM9_LS010	chr8:39023325|39025803:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000487273.6;ENST00000481873.7;ENST00000468065.5;ENST00000379917.7	101.861	72.582	31.328	0.963(9224)	0.986(692)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC88B_LS010	chr11:64342375|64342522:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	ENST00000463837.5;ENST00000356786.9	3.400	1.177	3.662	0.517(4957)	0.516(362)	0.863(15002)	non tumor-specific	alt_3prime	yes
TNNT1_LS028	chr19:55147021|55147126:-	TNNT1	troponin T1, slow skeletal type	protein coding gene	no	ENST00000587758.5;ENST00000356783.9;ENST00000291901.12;ENST00000588426.5;ENST00000588981.5;ENST00000593046.5;ENST00000589226.5;ENST00000588147.5;ENST00000586282.1	7.253	24.117	3.973	0.335(3209)	0.195(137)	0.785(13647)	non tumor-specific	alt_5prime	yes
ACAD9_LS003	chr3:128879841|128884653:+	ACAD9	acyl-CoA dehydrogenase family member 9	protein coding gene	no	ENST00000308982.11;ENST00000514336.1;ENST00000308982.11;ENST00000514336.1	17.698	11.378	19.896	0.942(9025)	0.957(672)	0.978(16997)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SEMA3A_LS026	chr7:84489182|84492460:-	SEMA3A	semaphorin 3A	protein coding gene	no	ENST00000448879.5	0.701	0.108	1.017	0.017(161)	0.077(54)	0.154(2677)	non tumor-specific	exon_skip	yes
UN_ZNF141_LS0034	chr4:378204|383095:+	ZNF141	zinc finger protein 141	protein coding gene	no	.	2.739	0.325	0.000	0.019(184)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_AL138752.2_LS0252	chr9:37974837|37977809:-	AL138752.2	-	protein coding gene	no	.	2.177	1.034	0.000	0.023(222)	0.038(27)	0(0)	non tumor-specific	nAS	no
UN_CEP72_LS0113	chr5:661295|661471:-	CEP72	centrosomal protein 72	protein coding gene	no	.	3.474	3.069	0.000	0.014(132)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
TBC1D3L_LS017	chr17:37987521|37988950:-	TBC1D3L	TBC1 domain family member 3L	protein coding gene	no	ENST00000617678.2	0.056	0.007	0.599	0.568(5443)	0.54(379)	0(1)	non tumor-specific	nAS	yes
ZFAND3_LS006	chr6:38061775|38082392:+	ZFAND3	zinc finger AN1-type containing 3	protein coding gene	no	ENST00000287218.8;ENST00000474522.5;ENST00000373389.5	111.175	69.088	75.014	0.997(9553)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_C15orf40_LS0001	chr15:82988828|82989106:-	C15orf40	chromosome 15 open reading frame 40	protein coding gene	no	.	2.982	0.259	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ADA2_LS0021	chr22:17180027|17180192:+	ADA2	transcriptional adaptor 2A	protein coding gene	no	.	3.177	0.950	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLPP5_LS002	chr8:38264604|38266141:-	PLPP5	phospholipid phosphatase 5	protein coding gene	no	ENST00000529359.5;ENST00000424479.6;ENST00000530432.1;ENST00000524616.5;ENST00000531823.5;ENST00000534339.5;ENST00000531109.5	23.699	17.927	16.756	0.986(9444)	0.996(699)	0.975(16953)	non tumor-specific	alt_3prime	yes
DGUOK-AS1_LS002	chr2:73958207|73981109:-	DGUOK-AS1	DGUOK antisense RNA 1	lncRNA gene	no	ENST00000439192.1	1.856	0.867	1.734	0.875(8387)	0.882(619)	0.517(8980)	non tumor-specific	nAS	yes
TH_LS002	chr11:2165365|2165668:-	TH	tyrosine hydroxylase	protein coding gene	no	ENST00000381178.5;ENST00000381175.5;ENST00000333684.9;ENST00000352909.7;ENST00000324155.8	45.042	3.096	1.632	0.177(1698)	0.08(56)	0.486(8442)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RGL1_UP_LS0018	chr1:183619549|183627402:+	RGL1	ral guanine nucleotide dissociation stimulator like 1	protein coding gene	no	.	0.488	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KRT8P28_UP_LS0002	chr1:151978253|151982666:-	KRT8P28	keratin 8 pseudogene 28	pseudogene	no	.	2.129	0.164	0.000	0.009(88)	0.001(1)	0(0)	non tumor-specific	nAS	no
FMC1_LS004	chr7:139340619|139345501:+	FMC1	formation of mitochondrial complex V assembly factor 1 homolog	protein coding gene	no	ENST00000481123.1	1.199	0.480	3.545	0.942(9029)	0.962(675)	0.9(15636)	non tumor-specific	nAS	yes
UN_MUC5B_LS0185	chr11:1247949|1248037:-	MUC5B	mucin 5B, oligomeric mucus/gel-forming	protein coding gene	no	.	3.660	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
G2E3_LS013	chr14:30593639|30597420:+	G2E3	G2/M-phase specific E3 ubiquitin protein ligase	protein coding gene	no	ENST00000206595.10;ENST00000544007.5;ENST00000438909.6;ENST00000648008.1;ENST00000553504.5;ENST00000549553.1	8.505	4.799	4.457	0.876(8397)	0.923(648)	0.936(16274)	non tumor-specific	exon_skip	yes
CYB5B_LS005	chr16:69448144|69459093:+	CYB5B	cytochrome b5 type B	protein coding gene	no	ENST00000512062.5;ENST00000307892.12;ENST00000561792.5;ENST00000568342.2	218.214	165.946	68.007	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_LINC01770_LS0014	chr1:1431247|1434178:-	LINC01770	long intergenic non-protein coding RNA 1770	lncRNA gene	no	.	2.178	0.339	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ELK4_LS0022	chr1:205620838|205631632:-	ELK4	ETS transcription factor ELK4	protein coding gene	no	.	0.838	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ALG1L2_LS0003	chr3:130088257|130091261:+	ALG1L2	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein coding gene	no	.	0.936	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KIF5C_LS029	chr2:149020382|149023078:+	KIF5C	kinesin family member 5C	protein coding gene	no	ENST00000464066.5	0.563	0.000	0.977	0.001(10)	0(0)	0.055(954)	non tumor-specific	exon_skip	yes
UN_CNTN3_LS0018	chr3:74486631|74493012:-	CNTN3	contactin 3	protein coding gene	no	.	1.647	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BMPR1A_LS0033	chr10:86906425|86906766:-	BMPR1A	bone morphogenetic protein receptor type 1A	protein coding gene	yes	.	11.363	0.384	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PUDPP1_UP_LS0001	chrY:15690722|15698246:-	PUDPP1	pseudouridine 5'-phosphatase pseudogene 1	pseudogene	no	.	3.395	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP002954.1_LS0004	chr11:118700643|118708382:+	AP002954.1	-	lncRNA gene	no	.	2.138	0.198	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00211_LS004	chr2:37865278|37875743:-	LINC00211	long intergenic non-protein coding RNA 211	lncRNA gene	no	ENST00000446799.5	0.372	0.099	0.697	0(2)	0.001(1)	0.028(488)	non tumor-specific	nAS	yes
UN_ABLIM2_LS0037	chr4:8009102|8020202:-	ABLIM2	actin binding LIM protein family member 2	protein coding gene	no	.	2.328	0.172	0.000	0.006(56)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FCRL6_LS018	chr1:159815459|159815536:+	FCRL6	Fc receptor like 6	protein coding gene	no	ENST00000368106.3	2.349	1.813	1.267	0.166(1592)	0.268(188)	0.485(8432)	non tumor-specific	alt_3prime;exon_skip	yes
TOM1L2_LS003	chr17:17848859|17850893:-	TOM1L2	target of myb1 like 2 membrane trafficking protein	protein coding gene	yes	ENST00000581396.5;ENST00000478943.5;ENST00000379504.7;ENST00000318094.14;ENST00000395739.8;ENST00000535933.5;ENST00000486413.1;ENST00000542206.5	25.936	30.678	36.116	0.987(9459)	0.99(695)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TXK_LS013	chr4:48110603|48112307:-	TXK	TXK tyrosine kinase	protein coding gene	no	ENST00000264316.8;ENST00000510457.1;ENST00000506073.1	1.033	1.539	1.231	0.251(2407)	0.346(243)	0.483(8399)	non tumor-specific	exon_skip	yes
UN_IRX3_LS0012	chr16:54285148|54285450:+	IRX3	iroquois homeobox 3	protein coding gene	no	.	4.374	0.178	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
C11orf80_LS030	chr11:66801102|66803995:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	ENST00000524551.5;ENST00000527634.5;ENST00000540737.6;ENST00000532727.5;ENST00000527352.1;ENST00000524551.5;ENST00000527634.5;ENST00000540737.6;ENST00000532727.5;ENST00000527352.1	9.864	6.049	7.191	0.969(9284)	0.947(665)	0.936(16261)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HADHA_LS033	chr2:26239143|26244530:-	HADHA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	protein coding gene	no	ENST00000380649.7;ENST00000492433.2;ENST00000644428.1;ENST00000645274.1;ENST00000643063.1;ENST00000646483.1;ENST00000471743.2	60.977	55.191	90.641	0.966(9257)	0.969(680)	0.979(17021)	non tumor-specific	alt_5prime	yes
UN_POLR2A_LS0242	chr17:7513453|7513475:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	18.550	6.045	0.000	0.021(198)	0.017(12)	0(0)	non tumor-specific	nAS	no
XRRA1_LS024	chr11:74859283|74862981:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	ENST00000340360.10	0.760	0.534	1.050	0.199(1902)	0.276(194)	0.522(9082)	non tumor-specific	exon_skip	yes
UN_AL356130.2_UP_LS0006	chr6:1005528|1130821:-	AL356130.2	-	lncRNA gene	no	.	2.815	2.856	0.000	0.004(37)	0.01(7)	0(0)	non tumor-specific	nAS	no
MYO5C_LS035	chr15:52251515|52253317:-	MYO5C	myosin VC	protein coding gene	no	ENST00000261839.11;ENST00000560809.5;ENST00000558902.5;ENST00000559459.5;ENST00000558242.1	11.151	12.077	5.201	0.875(8388)	0.922(647)	0.842(14642)	non tumor-specific	nAS	yes
GUF1_LS017	chr4:44689975|44690717:+	GUF1	GUF1 homolog, GTPase	protein coding gene	no	ENST00000506793.5;ENST00000281543.5	14.808	8.232	12.640	0.974(9329)	0.993(697)	0.972(16895)	non tumor-specific	exon_skip	yes
UN_C15orf40_LS0019	chr15:82992048|83008548:-	C15orf40	chromosome 15 open reading frame 40	protein coding gene	no	.	3.128	0.755	0.000	0.015(144)	0.033(23)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLX1A-SULT1A3_LS012	chr16:30201106|30202690:+	SLX1A-SULT1A3	SLX1A-SULT1A3 readthrough (NMD candidate)	lncRNA gene	no	ENST00000561824.5	0.051	0.037	2.449	0.149(1428)	0.16(112)	0.87(15114)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PGC_LS0017	chr6:41736965|41743273:+	PGC	progastricsin	protein coding gene	no	.	9.127	93.166	0.000	0.002(16)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_TMEM270_UP_LS0017	chr7:73769876|73831397:+	TMEM270	transmembrane protein 270	protein coding gene	no	.	13.233	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL096799.1_LS0001	chr20:7069694|7071672:+	AL096799.1	-	lncRNA gene	no	.	1.552	0.384	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
PSORS1C1_LS027	chr6:31138459|31139649:+	PSORS1C1	psoriasis susceptibility 1 candidate 1	protein coding gene	no	.;.;.	0.893	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GSAP_UP_LS0016	chr7:77533668|77533768:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	0.979	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL10P19_UP_LS0027	chr8:8935790|8944238:+	RPL10P19	ribosomal protein L10 pseudogene 19	pseudogene	no	.	2.498	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TENT2_LS005	chr5:79613075|79613935:+	TENT2	terminal nucleotidyltransferase 2	protein coding gene	no	ENST00000502269.1	0.041	0.051	0.721	0.713(6827)	0.809(568)	0.271(4717)	non tumor-specific	intron_retention	yes
NCS1_LS004	chr9:130200982|130217832:+	NCS1	neuronal calcium sensor 1	protein coding gene	no	ENST00000372398.5;ENST00000493042.1;ENST00000630865.1	31.236	35.823	23.243	0.964(9232)	0.962(675)	0.947(16453)	non tumor-specific	exon_skip	yes
DOK7_LS006	chr4:3476531|3485539:+	DOK7	docking protein 7	protein coding gene	no	ENST00000507039.5	1.303	0.673	1.569	0.223(2139)	0.373(262)	0.291(5052)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC062004.1_UP_LS0005	chr8:77000358|77006808:+	AC062004.1	-	lncRNA gene	no	.	1.739	0.259	0.000	0.011(102)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GPAT4_LS0032	chr8:41618977|41619221:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	.	2.974	1.480	0.000	0.266(2548)	0.15(105)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_PIK3C2B_LS0028	chr1:204442633|204443421:-	PIK3C2B	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein coding gene	no	.	3.035	0.653	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SIPA1L3_LS0134	chr19:38207723|38207858:-	SIPA1L3	signal induced proliferation associated 1 like 3	protein coding gene	no	.	2.409	2.842	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
REXO2_LS005	chr11:114440146|114440656:+	REXO2	RNA exonuclease 2	protein coding gene	no	ENST00000544827.5	1.825	0.017	0.627	0.032(309)	0.064(45)	0.037(649)	non tumor-specific	nAS	yes
HHAT_LS001	chr1:210328384|210348933:+	HHAT	hedgehog acyltransferase	protein coding gene	no	ENST00000541565.5;ENST00000413764.6	1.554	0.944	0.894	0.417(3999)	0.615(432)	0.342(5951)	non tumor-specific	exon_skip	yes
UN_YEATS2_LS0039	chr3:183762279|183773633:+	YEATS2	YEATS domain containing 2	protein coding gene	no	.	3.162	0.250	0.000	0.019(184)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
ABTB1_LS033	chr3:127680185|127680269:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000468137.5;ENST00000464431.1	44.525	33.889	134.259	0.963(9231)	0.972(682)	0.979(17021)	non tumor-specific	alt_5prime	yes
PLCB1_LS069	chr20:8963010|8965096:+	PLCB1	phospholipase C beta 1	protein coding gene	no	ENST00000635929.1;ENST00000637273.1	2.215	0.000	0.784	0.001(6)	0(0)	0.166(2891)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WRNIP1_LS0007	chr6:2765985|2766248:-	WRNIP1	WRN helicase interacting protein 1	protein coding gene	no	.	1.424	0.122	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WNK3_LS0004	chrX:54228158|54228714:-	WNK3	WNK lysine deficient protein kinase 3	protein coding gene	no	.	2.890	0.160	0.000	0.035(334)	0.003(2)	0(0)	non tumor-specific	nAS	no
GRIA2_LS016	chr4:157317711|157321438:+	GRIA2	glutamate ionotropic receptor AMPA type subunit 2	protein coding gene	no	ENST00000507898.5;ENST00000393815.6;ENST00000645636.1;ENST00000296526.11;ENST00000471736.5;ENST00000264426.13;ENST00000323661.10	8.380	5.829	5.807	0.136(1302)	0.101(71)	0.45(7821)	non tumor-specific	exon_skip	yes
GCC2_LS015	chr2:108472899|108474789:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	ENST00000462897.2	0.078	0.083	1.116	0.643(6163)	0.664(466)	0.503(8746)	non tumor-specific	exon_skip;intron_retention	yes
OMG_LS003	chr17:31278240|31297156:-	OMG	oligodendrocyte myelin glycoprotein	protein coding gene	no	ENST00000580156.1	1.114	0.231	1.807	0.035(336)	0.006(4)	0.103(1797)	non tumor-specific	alt_3prime	yes
ZNF736_LS007	chr7:64308625|64310278:+	ZNF736	zinc finger protein 736	protein coding gene	no	ENST00000465343.2	1.008	0.000	0.679	0(4)	0(0)	0.008(133)	non tumor-specific	intron_retention	yes
UN_DDX18_UP_LS0002	chr2:117128965|117130597:+	DDX18	DEAD-box helicase 18	protein coding gene	no	.	2.032	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VEGFA_LS0031	chr6:43774392|43777540:+	VEGFA	vascular endothelial growth factor A	protein coding gene	yes	.	3.735	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ZBTB24_LS0003	chr6:109467734|109474282:-	ZBTB24	zinc finger and BTB domain containing 24	protein coding gene	no	.	1.712	0.177	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MYL6B_LS0073	chr12:56157731|56157882:+	MYL6B	myosin light chain 6B	protein coding gene	no	.	165.928	5.144	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMPDL3A_LS003	chr6:122795890|122796824:+	SMPDL3A	sphingomyelin phosphodiesterase acid like 3A	protein coding gene	no	ENST00000368440.4;ENST00000487215.1	18.686	28.461	8.648	0.934(8946)	0.987(693)	0.948(16478)	non tumor-specific	alt_3prime;exon_skip	yes
ATR_LS031	chr3:142512470|142513501:-	ATR	serpin family A member 2 (gene/pseudogene)	protein coding gene	yes	ENST00000350721.8	12.420	6.888	6.534	0.89(8531)	0.929(652)	0.948(16478)	non tumor-specific	exon_skip	yes
DPF3_LS008	chr14:72674368|72679202:-	DPF3	double PHD fingers 3	protein coding gene	no	ENST00000556891.5	0.025	0.001	0.834	0.001(12)	0.001(1)	0.001(13)	non tumor-specific	nAS	yes
MRO_LS004	chr18:50801504|50805154:-	MRO	maestro	protein coding gene	no	ENST00000256425.6;ENST00000610511.4;ENST00000585524.5;ENST00000428869.6;ENST00000436348.6;ENST00000398439.7;ENST00000587291.5	3.805	4.103	1.992	0.206(1972)	0.409(287)	0.47(8178)	non tumor-specific	exon_skip	yes
UN_NPIPA7_UP_LS0001	chr16:16324915|16369204:+	NPIPA7	nuclear pore complex interacting protein family member A7	protein coding gene	no	.	1.558	0.897	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHODL_LS007	chr21:18245969|18256509:+	CHODL	chondrolectin	protein coding gene	no	ENST00000543733.5	0.990	0.117	0.730	0.015(140)	0.021(15)	0.017(289)	non tumor-specific	alt_5prime	yes
UN_AL645929.1_UP_LS0194	chr6:29896822|29944294:-	AL645929.1	-	pseudogene	no	.	43.817	2.344	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	nAS	no
GABARAPL1_LS013	chr12:10213219|10220440:+	GABARAPL1	GABA type A receptor associated protein like 1	protein coding gene	no	ENST00000545047.5;ENST00000541453.1;ENST00000545047.5;ENST00000541453.1	0.268	0.487	1.269	0.392(3751)	0.591(415)	0.621(10796)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SYCE2_LS0016	chr19:12900690|12902399:+	SYCE2	synaptonemal complex central element protein 2	protein coding gene	no	.	2.313	1.950	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00928_LS004	chr15:89510123|89523581:-	LINC00928	long intergenic non-protein coding RNA 928	lncRNA gene	no	ENST00000561108.5;ENST00000559967.1	0.014	0.000	0.799	0.013(124)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_MIR4477B_UP_LS0005	chr9:63815807|63817578:+	MIR4477B	microRNA 4477b	small non-coding RNA gene	no	.	1.029	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AC025871.1_LS002	chr8:28449031|28455624:+	AC025871.1	-	lncRNA gene	no	ENST00000523935.1	3.476	0.000	0.798	0.028(271)	0(0)	0.008(137)	non tumor-specific	nAS	yes
USP46_LS005	chr4:52604584|52610541:-	USP46	ubiquitin specific peptidase 46	protein coding gene	no	ENST00000441222.7;ENST00000451218.6;ENST00000503060.5;ENST00000514536.5;ENST00000508499.5	16.051	14.606	8.950	0.898(8606)	0.933(655)	0.947(16468)	non tumor-specific	nAS	yes
ADGRF5_LS016	chr6:46872013|46878202:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	ENST00000283296.11;ENST00000265417.7	17.611	37.914	10.262	0.77(7375)	0.912(640)	0.886(15394)	non tumor-specific	alt_5prime;exon_skip	yes
MYLKP1_LS001	chr3:75329966|75336099:-	MYLKP1	myosin light chain kinase pseudogene 1	pseudogene	no	ENST00000509077.1	0.302	0.133	0.594	0(1)	0.001(1)	0.003(44)	non tumor-specific	nAS	yes
UN_DPEP1_LS0010	chr16:89620237|89630305:+	DPEP1	dipeptidase 1	protein coding gene	no	.	1.141	0.514	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF146_LS0021	chr19:36236330|36236412:-	ZNF146	zinc finger protein 146	protein coding gene	no	.	2.532	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZBED9_LS008	chr6:28588119|28616025:-	ZBED9	zinc finger BED-type containing 9	protein coding gene	no	ENST00000530247.1	0.093	0.000	0.925	0(1)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_ZNF282_LS0012	chr7:149210704|149211653:+	ZNF282	zinc finger protein 282	protein coding gene	no	.	2.269	0.067	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AL354949.1_LS001	chr1:71571000|71573434:+	AL354949.1	-	lncRNA gene	no	ENST00000446438.1	0.330	0.118	0.800	0.084(804)	0.121(85)	0.101(1758)	non tumor-specific	nAS	yes
ALG13_LS024	chrX:111689197|111708965:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000470704.1	0.268	0.409	1.031	0.313(3003)	0.323(227)	0.475(8252)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL162511.1_LS0004	chr14:36215515|36235320:+	AL162511.1	-	lncRNA gene	no	.	2.518	1.411	0.000	0.035(339)	0.094(66)	0(0)	non tumor-specific	nAS	no
UN_AL132656.2_UP_LS0013	chr10:79559484|79610970:+	AL132656.2	-	lncRNA gene	no	.	138.856	47.695	0.000	0.007(67)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IL1RN_LS0007	chr2:113127550|113127689:+	IL1RN	interleukin 1 receptor antagonist	protein coding gene	no	.	2.159	1.330	0.000	0.09(862)	0.188(132)	0(0)	non tumor-specific	nAS	no
UN_NRSN2-AS1_LS0031	chr20:346454|347419:-	NRSN2-AS1	NRSN2 antisense RNA 1	lncRNA gene	no	.	3.456	0.705	0.000	0.012(119)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_HLA-DQA1_UP_LS0008	chr6:32445045|32545688:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	.	1.080	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNTLN_LS0008	chr9:17236588|17265527:+	CNTLN	centlein	protein coding gene	no	.	1.362	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM258_LS008	chr11:61789235|61789799:-	TMEM258	transmembrane protein 258	protein coding gene	no	.;.	38.039	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MAN2A1_LS009	chr5:109781598|109784744:+	MAN2A1	mannosidase alpha class 2A member 1	protein coding gene	no	ENST00000261483.4	19.229	17.272	7.205	0.88(8432)	0.97(681)	0.945(16426)	non tumor-specific	alt_3prime	yes
UN_AC040174.1_UP_LS0006	chr16:63130986|63305347:-	AC040174.1	-	lncRNA gene	no	.	1.799	0.199	0.000	0.012(115)	0.019(13)	0(0)	non tumor-specific	nAS	no
ETFB_LS008	chr19:51354308|51366270:-	ETFB	electron transfer flavoprotein subunit beta	protein coding gene	no	ENST00000309244.8;ENST00000596253.1;ENST00000593992.1	226.136	179.533	165.343	0.992(9505)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
SEC23A_LS014	chr14:39085906|39086929:-	SEC23A	Sec23 homolog A, COPII coat complex component	protein coding gene	no	ENST00000537403.5;ENST00000307712.10;ENST00000545328.6	27.217	25.008	29.503	0.955(9154)	0.987(693)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_C17orf97_LS0034	chr17:413623|413684:+	C17orf97	chromosome 17 open reading frame 97	protein coding gene	no	.	9.981	4.245	0.000	0.031(299)	0.04(28)	0(0)	non tumor-specific	intron_retention	no
UN_SRSF4_LS0025	chr1:29165357|29165890:-	SRSF4	serine and arginine rich splicing factor 4	protein coding gene	no	.	10.889	0.087	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
LINC02027_LS001	chr3:80993927|81095112:+	LINC02027	long intergenic non-protein coding RNA 2027	lncRNA gene	no	ENST00000482617.1	0.857	2.474	14.242	0.1(957)	0.214(150)	0.027(470)	non tumor-specific	nAS	yes
ACAD10_LS048	chr12:111755745|111756212:+	ACAD10	acyl-CoA dehydrogenase family member 10	protein coding gene	no	ENST00000508303.5	0.752	0.428	1.073	0.25(2399)	0.256(180)	0.616(10704)	non tumor-specific	alt_3prime;intron_retention	yes
GKN1_LS002	chr2:68977548|68977637:+	GKN1	gastrokine 1	protein coding gene	yes	ENST00000377938.2;ENST00000478888.1	89.565	1697.994	1.348	0.058(555)	0.077(54)	0.345(6002)	non tumor-specific	exon_skip	yes
AGTPBP1_LS006	chr9:85586960|85588298:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	ENST00000376083.7;ENST00000337006.8;ENST00000357081.7;ENST00000628899.1	22.518	14.758	19.067	0.97(9297)	0.981(689)	0.979(17021)	non tumor-specific	exon_skip	yes
GPR107_LS003	chr9:130076462|130077299:+	GPR107	G protein-coupled receptor 107	protein coding gene	no	ENST00000372406.5;ENST00000347136.10;ENST00000372410.7;ENST00000493417.5;ENST00000610997.1	23.057	16.983	13.317	0.951(9108)	0.974(684)	0.975(16942)	non tumor-specific	exon_skip	yes
UN_PRR36_LS0145	chr19:7872486|7872686:-	PRR36	proline rich 36	protein coding gene	no	.	3.096	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_HNRNPA1_LS0049	chr12:54284844|54284869:-	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	.	8.694	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTM1_LS002	chrX:150592677|150596498:+	MTM1	myotubularin 1	protein coding gene	no	ENST00000370396.6;ENST00000424519.1;ENST00000370393.5;ENST00000306167.11;ENST00000490530.1	6.005	5.902	4.467	0.859(8232)	0.966(678)	0.929(16156)	non tumor-specific	exon_skip	yes
UN_SORT1_LS0040	chr1:109313627|109313705:+	SORT1	sortilin 1	protein coding gene	no	.	0.810	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VPS13C_LS032	chr15:61913415|61915633:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	ENST00000644861.1;ENST00000249837.7;ENST00000261517.9;ENST00000650094.1;ENST00000645819.1;ENST00000395896.8;ENST00000649766.1;ENST00000395898.3;ENST00000558338.1	15.970	12.135	7.005	0.868(8317)	0.959(673)	0.942(16382)	non tumor-specific	nAS	yes
CEACAM8_LS001	chr19:42581353|42583206:-	CEACAM8	CEA cell adhesion molecule 8	protein coding gene	no	ENST00000244336.9	3.398	0.876	1.650	0.023(224)	0.077(54)	0.141(2451)	non tumor-specific	nAS	yes
BDP1_LS025	chr5:71522490|71522756:+	BDP1	protein tyrosine phosphatase non-receptor type 18	protein coding gene	no	ENST00000358731.8;ENST00000508917.6	7.895	5.386	5.350	0.762(7299)	0.89(625)	0.924(16068)	non tumor-specific	nAS	yes
MTMR1_LS028	chrX:150737448|150744361:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000485376.5;ENST00000370390.7;ENST00000445323.6;ENST00000488357.1;ENST00000370387.2	27.685	15.441	19.915	0.98(9392)	0.996(699)	0.978(17002)	non tumor-specific	exon_skip	yes
AL390719.1_LS001	chr1:1059846|1060280:+	AL390719.1	-	pseudogene	no	ENST00000427998.5	0.137	0.115	0.729	0.191(1828)	0.084(59)	0.09(1560)	non tumor-specific	nAS	yes
UN_EPB41L1_LS0053	chr20:36121816|36122683:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	.	2.168	0.939	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
MSH6_LS029	chr2:47805027|47805618:+	MSH6	mutS homolog 6	protein coding gene	no	ENST00000614496.4;ENST00000540021.5;ENST00000622629.4;ENST00000445503.5;ENST00000234420.9;ENST00000538136.1	118.843	43.017	35.048	0.997(9553)	0.997(700)	0.979(17011)	non tumor-specific	intron_retention	yes
STX2_LS010	chr12:130807090|130808631:-	STX2	syntaxin 2	protein coding gene	no	ENST00000261653.10;ENST00000392373.6;ENST00000344271.5	16.933	12.504	18.855	0.863(8270)	0.959(673)	0.975(16951)	non tumor-specific	exon_skip	yes
FMN2_LS014	chr1:240235895|240257945:+	FMN2	formin 2	protein coding gene	no	ENST00000463398.5	0.045	0.017	0.887	0.013(127)	0.007(5)	0.021(362)	non tumor-specific	nAS	yes
ARAP2_LS048	chr4:36212487|36213243:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	ENST00000303965.8;ENST00000508066.1	7.987	6.498	4.558	0.679(6501)	0.83(583)	0.845(14692)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPSAP68_UP_LS0610	chr21:8401527|8445510:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	160.208	135.170	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
VWA3B_LS027	chr2:98212028|98217846:+	VWA3B	von Willebrand factor A domain containing 3B	protein coding gene	no	ENST00000448638.5;ENST00000409460.5;ENST00000477737.5;ENST00000416277.5;ENST00000489968.5;ENST00000489630.5;ENST00000473149.5	2.232	2.624	1.018	0.073(697)	0.137(96)	0.17(2950)	non tumor-specific	exon_skip	yes
UN_GPATCH4_UP_LS0001	chr1:156615077|156616483:-	GPATCH4	G-patch domain containing 4	protein coding gene	no	.	3.127	0.175	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BRWD1_LS0053	chr21:39312900|39313443:-	BRWD1	bromodomain and WD repeat domain containing 1	protein coding gene	no	.	0.632	0.202	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CORO1A_LS0001	chr16:30183013|30183620:+	CORO1A	coronin 1A	protein coding gene	no	.	0.804	0.284	0.000	0.041(392)	0.057(40)	0(0)	non tumor-specific	exon_skip	no
UN_DNAJB2_LS0039	chr2:219286411|219286468:-	DNAJB2	DnaJ heat shock protein family (Hsp40) member B2	protein coding gene	no	.	5.584	0.067	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
BPTF_LS025	chr17:67918838|67920015:+	BPTF	bromodomain PHD finger transcription factor	protein coding gene	no	ENST00000544778.6;ENST00000321892.8;ENST00000306378.10;ENST00000644067.1;ENST00000342579.8;ENST00000424123.7	34.192	17.529	20.298	0.863(8268)	0.952(668)	0.975(16953)	non tumor-specific	exon_skip	yes
UN_ARID1B_LS0052	chr6:157147478|157147735:-	ARID1B	AT-rich interaction domain 1B	protein coding gene	no	.	1.402	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
PKD1P1_LS050	chr16:16329240|16329365:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	ENST00000458669.1	18.543	10.618	35.699	0.835(7999)	0.838(588)	0.936(16266)	non tumor-specific	alt_5prime	yes
UN_FAM155A_UP_LS0002	chr13:108025312|108026103:-	FAM155A	family with sequence similarity 155 member A	protein coding gene	no	.	6.107	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FABP5P3_LS0001	chr7:152435787|152436512:-	FABP5P3	fatty acid binding protein 5 pseudogene 3	pseudogene	no	.	1.267	0.351	0.000	0.042(400)	0.047(33)	0(0)	non tumor-specific	nAS	no
UN_PARP10_LS0208	chr8:143991804|143991950:+	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	15.379	0.669	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_KRT7_LS0027	chr12:52233410|52233510:-	KRT7	keratin 7	protein coding gene	no	.	3.555	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP1R12B_LS0097	chr1:202587712|202587798:-	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	1.016	0.937	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYEOV_LS0014	chr11:69295942|69296067:-	MYEOV	myeloma overexpressed	protein coding gene	no	.	4.482	0.329	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPSAP58_LS0010	chr19:23827322|23827443:-	RPSAP58	ribosomal protein SA pseudogene 58	pseudogene	no	.	1.423	0.986	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
CSN1S1_LS017	chr4:69942063|69942536:+	CSN1S1	casein alpha s1	protein coding gene	no	ENST00000246891.8;ENST00000507763.5;ENST00000507772.5;ENST00000505782.5	7.802	0.965	1.380	0.013(127)	0.083(58)	0.181(3147)	non tumor-specific	exon_skip	yes
UN_TMCO3_LS0022	chr13:113510424|113516043:+	TMCO3	transmembrane and coiled-coil domains 3	protein coding gene	no	.	2.721	0.000	0.000	0.005(45)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_MYO18A_LS0110	chr17:29124688|29165942:-	MYO18A	myosin XVIIIA	protein coding gene	no	.	0.675	0.667	0.000	0.01(97)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
GIGYF2_LS042	chr2:232765545|232765892:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	ENST00000475530.1	0.202	0.028	0.638	0.003(24)	0.009(6)	0.001(26)	non tumor-specific	intron_retention	yes
UN_AC073862.4_UP_LS0001	chr12:130953258|130953928:+	AC073862.4	-	lncRNA gene	no	.	0.604	0.418	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC087289.3_LS0004	chr17:75898897|75899162:+	AC087289.3	-	protein coding gene	no	.	1.062	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HEATR1_LS0009	chr1:236550291|236550414:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	.	1.270	0.104	0.000	0.02(189)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FXYD5_LS026	chr19:35166428|35169566:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	ENST00000588699.5	0.898	1.263	0.785	0.255(2444)	0.155(109)	0.101(1760)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC083967.1_LS0004	chr8:68850045|68850884:-	AC083967.1	-	lncRNA gene	no	.	22.941	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF705A_LS007	chr12:8177185|8188472:+	ZNF705A	zinc finger protein 705A	protein coding gene	no	ENST00000398526.2	0.095	0.016	0.684	0.009(91)	0.01(7)	0.002(34)	non tumor-specific	nAS	yes
UN_MS4A12_LS0005	chr11:60506601|60506927:-	MS4A12	membrane spanning 4-domains A12	protein coding gene	no	.	3.802	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
AC103736.1_LS002	chr11:45355602|45356396:+	AC103736.1	-	lncRNA gene	no	ENST00000524488.1	0.235	0.189	1.217	0.331(3169)	0.493(346)	0.357(6198)	non tumor-specific	nAS	yes
UN_CFAP157_LS0011	chr9:127713206|127713532:+	CFAP157	cilia and flagella associated protein 157	protein coding gene	no	.	2.388	0.586	0.000	0.009(87)	0.021(15)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
GC_LS013	chr4:71765585|71768301:-	GC	GC vitamin D binding protein	protein coding gene	no	ENST00000503472.5	99.189	81.489	4.254	0.053(512)	0.145(102)	0.024(423)	non tumor-specific	alt_3prime	yes
UN_HAPLN2_LS0004	chr1:156621952|156622951:-	HAPLN2	hyaluronan and proteoglycan link protein 2	protein coding gene	no	.	2.985	0.274	0.000	0.014(131)	0.03(21)	0(0)	non tumor-specific	nAS	no
SLC6A13_LS028	chr12:238010|238171:-	SLC6A13	solute carrier family 6 member 13	protein coding gene	no	ENST00000542272.5	0.137	0.080	1.303	0.063(604)	0.128(90)	0.166(2886)	non tumor-specific	exon_skip;intron_retention	yes
UN_PCBP3_LS0009	chr21:45744337|45755417:+	PCBP3	poly(rC) binding protein 3	protein coding gene	no	.	2.007	0.034	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ADAM8_LS030	chr10:133274235|133275484:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7;ENST00000537099.5;ENST00000463298.5;ENST00000559180.1	9.139	2.599	2.514	0.753(7215)	0.682(479)	0.829(14402)	non tumor-specific	exon_skip	yes
ARIH2_LS036	chr3:48943533|48945136:+	ARIH2	ariadne RBR E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000472640.1	0.021	0.014	0.882	0.339(3249)	0.379(266)	0.27(4691)	non tumor-specific	exon_skip	yes
XRCC1_LS014	chr19:43553683|43554646:-	XRCC1	X-ray repair cross complementing 1	protein coding gene	no	ENST00000262887.9;ENST00000543982.5;ENST00000597811.5;ENST00000595789.5;ENST00000598165.5;ENST00000599693.5;ENST00000594107.1	52.877	26.293	40.600	0.994(9521)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SPIDR_LS012	chr8:47291137|47293867:+	SPIDR	scaffold protein involved in DNA repair	protein coding gene	no	ENST00000297423.8;ENST00000541342.2;ENST00000518074.5;ENST00000522900.5;ENST00000521550.5;ENST00000524126.5;ENST00000519661.5;ENST00000524141.5;ENST00000524033.5;ENST00000522117.5;ENST00000521214.5;ENST00000521798.1	19.715	11.512	23.360	0.98(9385)	0.987(693)	0.978(16992)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FER1L4_LS0059	chr20:35584093|35591962:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	.	1.829	0.434	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
METTL15_LS009	chr11:28113604|28290206:+	METTL15	methyltransferase like 15	protein coding gene	no	ENST00000532947.2	1.526	0.000	0.653	0.001(5)	0(0)	0.07(1209)	non tumor-specific	exon_skip	yes
MYO9A_LS023	chr15:71888116|71893111:-	MYO9A	myosin IXA	protein coding gene	no	.;.	0.615	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
TECR_LS002	chr19:14529711|14533933:+	TECR	trans-2,3-enoyl-CoA reductase	protein coding gene	no	ENST00000598298.5	0.004	0.000	0.907	0.02(189)	0.011(8)	0.34(5909)	non tumor-specific	exon_skip;mutex_exons	yes
UN_UBBP4_LS0117	chr17:22204606|22204737:+	UBBP4	ubiquitin B pseudogene 4	pseudogene	no	.	6.837	0.482	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
LMF2_LS015	chr22:50506666|50506782:-	LMF2	lipase maturation factor 2	protein coding gene	no	ENST00000474879.6;ENST00000216080.5;ENST00000505981.5;ENST00000507607.1	58.106	32.204	62.706	0.99(9485)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
GCGR_LS006	chr17:81810932|81811010:+	GCGR	glucagon receptor	protein coding gene	no	ENST00000400723.7;ENST00000570996.5;ENST00000574283.2	10.000	8.766	1.482	0.103(984)	0.274(192)	0.357(6207)	non tumor-specific	alt_3prime;alt_5prime	yes
OTOA_LS021	chr16:21722978|21726523:+	OTOA	otoancorin	protein coding gene	no	ENST00000646100.1;ENST00000647277.1;ENST00000286149.8;ENST00000388958.8;ENST00000388956.8;ENST00000388957.3;ENST00000563871.5	2.641	0.222	0.812	0.03(290)	0.004(3)	0.135(2345)	non tumor-specific	nAS	yes
OBSCN_LS022	chr1:228264391|228273272:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.;.	2.307	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PCNX1_LS036	chr14:71052012|71053297:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000556849.2	0.281	0.046	0.716	0.046(439)	0.04(28)	0.208(3620)	non tumor-specific	exon_skip	yes
UN_PELP1_LS0082	chr17:4675847|4676036:-	PELP1	proline, glutamate and leucine rich protein 1	protein coding gene	yes	.	6.447	0.716	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WASH3P_LS0012	chr15:101966223|101970675:+	WASH3P	WASP family homolog 3, pseudogene	pseudogene	no	.	7.438	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
IQSEC1_LS007	chr3:12909434|12911629:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	ENST00000273221.8;ENST00000646269.1;ENST00000618604.4;ENST00000648114.1;ENST00000613206.1;ENST00000648386.1	32.537	37.077	30.144	0.947(9076)	0.981(689)	0.979(17018)	non tumor-specific	nAS	yes
BST2_LS004	chr19:17403824|17404129:-	BST2	bone marrow stromal cell antigen 2	protein coding gene	no	ENST00000252593.6;ENST00000533098.5;ENST00000527220.1	633.811	267.758	158.498	0.997(9555)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC6A1_LS008	chr3:11015733|11017120:+	SLC6A1	solute carrier family 6 member 1	protein coding gene	no	ENST00000642767.1;ENST00000645776.1;ENST00000646035.1;ENST00000644314.1;ENST00000646060.1;ENST00000646088.1	0.530	1.858	1.736	0.164(1571)	0.168(118)	0.452(7849)	non tumor-specific	alt_3prime	yes
SLC35A1_LS015	chr6:87508437|87508439:+	SLC35A1	solute carrier family 35 member A1	protein coding gene	no	ENST00000622775.3	2.730	0.000	0.634	0(1)	0(0)	0.025(435)	non tumor-specific	nAS	yes
UN_CLDN16_UP_LS0010	chr3:190295467|190306539:+	CLDN16	claudin 16	protein coding gene	no	.	1.585	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RASSF1_LS0013	chr3:50332185|50337173:-	RASSF1	Ras association domain family member 1	protein coding gene	yes	.	2.701	0.102	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RNF103-CHMP3_LS0036	chr2:86605433|86612159:-	RNF103-CHMP3	RNF103-CHMP3 readthrough	protein coding gene	no	.	5.331	0.920	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_FAM182B_LS0089	chr20:25853685|25853860:-	FAM182B	family with sequence similarity 182 member B	lncRNA gene	no	.	0.682	0.033	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCAPER_LS002	chr15:76351288|76353949:-	SCAPER	S-phase cyclin A associated protein in the ER	protein coding gene	no	ENST00000563290.5;ENST00000538941.6;ENST00000324767.11;ENST00000562948.1;ENST00000563246.1	29.405	21.109	30.147	0.99(9483)	0.996(699)	0.979(17014)	non tumor-specific	nAS	yes
SMAGP_LS006	chr12:51251583|51269245:-	SMAGP	small cell adhesion glycoprotein	protein coding gene	no	ENST00000380103.4	0.058	0.327	0.698	0.116(1111)	0.098(69)	0.121(2107)	non tumor-specific	exon_skip;mutex_exons	yes
SPATS2_LS026	chr12:49484669|49489465:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000550997.5;ENST00000549538.5;ENST00000549412.5;ENST00000548710.5;ENST00000549375.5;ENST00000553127.5;ENST00000321898.10;ENST00000551540.5;ENST00000552918.5	16.271	8.746	10.405	0.972(9315)	0.972(682)	0.963(16736)	non tumor-specific	exon_skip	yes
SEPT4_LS042	chr17:58526978|58527826:-	SEPT4	septin 4	protein coding gene	yes	ENST00000583114.5;ENST00000580791.1;ENST00000582248.1	0.010	0.086	31.576	0.143(1370)	0.131(92)	0.191(3328)	non tumor-specific	alt_5prime;intron_retention	yes
ANXA1_LS005	chr9:73151924|73158522:+	ANXA1	annexin A1	protein coding gene	yes	ENST00000257497.10;ENST00000468639.5;ENST00000257497.10;ENST00000468639.5;ENST00000257497.10;ENST00000468639.5	89.772	77.918	149.690	0.972(9315)	0.969(680)	0.978(17002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RRBP1_LS048	chr20:17658920|17659575:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.;.	25.440	5.658	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
USP24_LS026	chr1:55097172|55097598:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000294383.6	17.755	12.446	11.987	0.852(8160)	0.943(662)	0.971(16878)	non tumor-specific	alt_3prime	yes
UN_IGHG1_LS0011	chr14:105741504|105741634:+	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	231.165	1.607	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDC14A_LS015	chr1:100455492|100462651:+	CDC14A	cell division cycle 14A	protein coding gene	no	ENST00000644844.1;ENST00000635056.2;ENST00000647203.1;ENST00000647005.1;ENST00000644676.1;ENST00000361544.11;ENST00000336454.4;ENST00000370124.8;ENST00000644813.1	6.656	6.600	3.865	0.745(7142)	0.892(626)	0.907(15759)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NBL1_LS0068	chr1:19657549|19658325:-	NBL1	NBL1, DAN family BMP antagonist	protein coding gene	no	.	4.098	2.277	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGAX_LS017	chr16:31363075|31363165:+	ITGAX	integrin subunit alpha X	protein coding gene	no	ENST00000268296.8;ENST00000562522.2;ENST00000571644.1	5.470	3.850	2.753	0.766(7338)	0.568(399)	0.808(14038)	non tumor-specific	alt_3prime	yes
UN_XPNPEP3_LS0013	chr22:40861835|40868999:+	XPNPEP3	X-prolyl aminopeptidase 3	protein coding gene	no	.	3.134	1.302	0.000	0.117(1124)	0.123(86)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_ZNF559-ZNF177_LS0027	chr19:9352004|9354264:+	ZNF559-ZNF177	ZNF559-ZNF177 readthrough	protein coding gene	no	.	8.575	0.143	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC087289.1_UP_LS0001	chr17:75844307|75844734:-	AC087289.1	-	lncRNA gene	no	.	1.290	0.414	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
DEPTOR_LS010	chr8:120003111|120006805:+	DEPTOR	DEP domain containing MTOR interacting protein	protein coding gene	no	ENST00000523492.5;ENST00000286234.5;ENST00000518057.1	36.772	52.231	13.281	0.969(9287)	0.997(700)	0.948(16486)	non tumor-specific	exon_skip	yes
ITGA4_LS013	chr2:181482651|181485881:+	ITGA4	integrin subunit alpha 4	protein coding gene	no	ENST00000397033.6;ENST00000465522.5;ENST00000233573.6	18.297	4.133	2.711	0.666(6379)	0.783(550)	0.771(13406)	non tumor-specific	nAS	yes
UN_CHI3L1_LS0007	chr1:203179129|203179167:+	CHI3L1	chitinase 3 like 1	protein coding gene	no	.	97.869	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC009237.16_LS001	chr2:95588560|95589160:+	AC009237.16	-	pseudogene	no	ENST00000612987.1	0.033	0.016	0.674	0.001(6)	0.004(3)	0.001(9)	non tumor-specific	nAS	yes
C5AR1_LS004	chr19:47307510|47307725:+	C5AR1	complement C5a receptor 1	protein coding gene	no	ENST00000595501.5	1.457	0.448	1.333	0.167(1604)	0.177(124)	0.526(9139)	non tumor-specific	exon_skip	yes
AC078950.1_LS003	chr12:11431562|11435126:-	AC078950.1	-	lncRNA gene	no	ENST00000542062.5;ENST00000539178.5	2.350	0.000	1.031	0.001(10)	0(0)	0.025(442)	non tumor-specific	nAS	yes
UN_AL136018.1_LS0017	chr14:24623470|24638595:+	AL136018.1	-	lncRNA gene	no	.	1.712	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TFRC_LS021	chr3:196072152|196073930:-	TFRC	transferrin receptor	protein coding gene	no	ENST00000420415.5;ENST00000360110.8;ENST00000392396.7	51.124	29.460	14.013	0.927(8886)	0.97(681)	0.968(16830)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL691447.2_LS0006	chr9:94347582|94359763:-	AL691447.2	-	lncRNA gene	no	.	1.091	0.151	0.000	0.015(144)	0.013(9)	0(0)	non tumor-specific	nAS	no
CASP14_LS004	chr19:15053958|15055158:+	CASP14	caspase 14	protein coding gene	no	ENST00000427043.3	20.051	3.215	1.062	0.14(1343)	0.077(54)	0.254(4410)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF222_UP_LS0001	chr19:43988558|44008790:+	ZNF222	zinc finger protein 222	protein coding gene	no	.	1.549	0.232	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	nAS	no
CLP1_LS003	chr11:57657860|57659430:+	CLP1	cleavage factor polyribonucleotide kinase subunit 1	protein coding gene	no	ENST00000533905.1	0.105	0.040	0.607	0.088(839)	0.07(49)	0.046(796)	non tumor-specific	alt_3prime	yes
UN_DHRSX_UP_LS0021	chrX:2570166|2574096:-	DHRSX	dehydrogenase/reductase X-linked	protein coding gene	no	.	1.291	0.193	0.000	0.01(96)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CNGB3_LS0013	chr8:86561237|86561313:-	CNGB3	cyclic nucleotide gated channel subunit beta 3	protein coding gene	no	.	1.216	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TNNC2_LS003	chr20:45824406|45824495:-	TNNC2	troponin C2, fast skeletal type	protein coding gene	no	ENST00000372555.7;ENST00000372557.1	4.182	14.014	9.450	0.464(4443)	0.707(496)	0.956(16613)	non tumor-specific	nAS	yes
TMEM260_LS004	chr14:56580074|56585001:+	TMEM260	transmembrane protein 260	protein coding gene	no	ENST00000261556.10;ENST00000557657.5;ENST00000556975.5;ENST00000555497.5;ENST00000557626.5;ENST00000539559.6;ENST00000538838.5	2.140	1.348	2.959	0.839(8036)	0.923(648)	0.897(15589)	non tumor-specific	nAS	yes
UN_ATF6_LS0038	chr1:161958710|161962631:+	ATF6	activating transcription factor 6	protein coding gene	no	.	3.424	1.029	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
RHEB_LS008	chr7:151491014|151517891:-	RHEB	RHEB pseudogene 1	protein coding gene	no	ENST00000470370.1	0.014	0.007	0.785	0.165(1577)	0.132(93)	0.252(4383)	non tumor-specific	nAS	yes
UN_LINC01267_UP_LS0017	chr3:14394539|14396245:-	LINC01267	long intergenic non-protein coding RNA 1267	lncRNA gene	no	.	1.686	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NBPF15_LS0019	chr1:144437109|144439829:-	NBPF15	NBPF member 15	protein coding gene	no	.	2.109	0.168	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADCY8_LS010	chr8:130849803|130867846:-	ADCY8	adenylate cyclase 8	protein coding gene	no	ENST00000286355.9	8.746	2.570	7.320	0.157(1504)	0.125(88)	0.263(4571)	non tumor-specific	exon_skip	yes
GATA5_LS003	chr20:62465921|62466426:-	GATA5	GATA binding protein 5	protein coding gene	yes	ENST00000252997.2	7.244	6.351	2.091	0.179(1711)	0.432(303)	0.358(6220)	non tumor-specific	nAS	yes
NUDT14_LS003	chr14:105175987|105176534:-	NUDT14	nudix hydrolase 14	protein coding gene	no	ENST00000551024.5;ENST00000550002.1	1.490	0.839	2.662	0.858(8219)	0.877(616)	0.822(14293)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
IGSF22_LS006	chr11:18707996|18709387:-	IGSF22	immunoglobulin superfamily member 22	protein coding gene	no	ENST00000319338.6	0.413	0.000	0.874	0(4)	0(0)	0.034(592)	non tumor-specific	exon_skip	yes
UN_USP10_LS0008	chr16:84728104|84728748:-	USP10	ubiquitin specific peptidase 32	protein coding gene	no	.	2.849	0.494	0.000	0.012(112)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SPINT2_LS0037	chr19:38264834|38291905:-	SPINT2	serine peptidase inhibitor, Kunitz type 2	protein coding gene	yes	.	12.273	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CYC1_LS0046	chr8:144096753|144097038:-	CYC1	cytochrome c1	protein coding gene	no	.	3.361	1.077	0.000	0.018(174)	0.014(10)	0(0)	non tumor-specific	nAS	no
ANKS6_LS014	chr9:98756606|98768081:-	ANKS6	ankyrin repeat and sterile alpha motif domain containing 6	protein coding gene	no	ENST00000444472.5	5.293	3.148	4.946	0.791(7579)	0.799(561)	0.93(16168)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LIFR_UP_LS0008	chr5:38686123|38743927:-	LIFR	LIF receptor subunit alpha	protein coding gene	yes	.	1.391	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C6orf48_UP_LS0673	chr6:31817593|31829619:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	197.129	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
NEFH_LS002	chr22:29483574|29485723:+	NEFH	neurofilament heavy	protein coding gene	no	ENST00000310624.6	18.030	29.883	1.994	0.417(3991)	0.459(322)	0.607(10544)	non tumor-specific	nAS	yes
AC021351.1_LS004	chr15:35974769|36033193:-	AC021351.1	-	lncRNA gene	no	ENST00000650498.1;ENST00000561394.1	6.329	0.000	0.687	0.002(20)	0(0)	0.007(114)	non tumor-specific	nAS	yes
URI1_LS017	chr19:30004556|30005361:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	ENST00000574176.1	0.031	0.017	0.716	0.256(2455)	0.308(216)	0.238(4130)	non tumor-specific	alt_5prime;exon_skip	yes
PPP5C_LS011	chr19:46387453|46388408:+	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	ENST00000012443.8;ENST00000478046.5;ENST00000391919.1;ENST00000486994.5;ENST00000491003.5;ENST00000492109.6;ENST00000525507.5	191.724	94.178	94.500	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_TRAF5_LS0029	chr1:211361162|211369452:+	TRAF5	TNF receptor associated factor 5	protein coding gene	no	.	1.701	0.206	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
SLC25A26_LS016	chr3:66369542|66370529:+	SLC25A26	solute carrier family 25 member 26	protein coding gene	no	ENST00000354883.10;ENST00000336733.10;ENST00000464350.6;ENST00000413054.5;ENST00000483224.5;ENST00000484768.1	65.437	46.019	38.197	0.994(9525)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_FBXO34_LS0020	chr14:55307400|55350381:+	FBXO34	F-box protein 34	protein coding gene	no	.	1.307	1.178	0.000	0.037(351)	0.071(50)	0(0)	non tumor-specific	nAS	no
POLD1_LS011	chr19:50395150|50398851:+	POLD1	DNA polymerase delta 1, catalytic subunit	protein coding gene	no	ENST00000601098.5;ENST00000643407.1;ENST00000593887.1	0.151	0.276	0.930	0.547(5240)	0.395(277)	0.509(8839)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PTK7_LS013	chr6:43139150|43145220:+	PTK7	protein tyrosine kinase 7 (inactive)	protein coding gene	yes	ENST00000489707.5	0.025	0.054	0.689	0.327(3131)	0.236(166)	0.096(1671)	non tumor-specific	nAS	yes
SEPT5_LS018	chr22:19721957|19722237:+	SEPT5	septin 5	protein coding gene	no	ENST00000455784.6;ENST00000406395.5;ENST00000406172.6;ENST00000412544.5;ENST00000383045.7;ENST00000438754.6	47.283	72.303	60.808	0.964(9236)	0.967(679)	0.978(16997)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SBF1_LS011	chr22:50455409|50455481:-	SBF1	SET binding factor 1	protein coding gene	no	ENST00000380817.7;ENST00000348911.10;ENST00000470434.1	75.956	45.215	99.514	0.992(9509)	0.991(696)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC133644.3_LS0040	chr2:87753634|87766728:+	AC133644.3	-	lncRNA gene	no	.	3.391	0.641	0.000	0.025(235)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_COX19_LS0052	chr7:935505|945799:-	COX19	cytochrome c oxidase assembly factor COX19	protein coding gene	no	.	1.162	0.321	0.000	0.008(79)	0.007(5)	0(0)	non tumor-specific	nAS	no
SLC25A15_LS009	chr13:40802300|40805118:+	SLC25A15	solute carrier family 25 member 15	protein coding gene	no	ENST00000478827.1	0.140	0.277	0.661	0.067(642)	0.097(68)	0.049(857)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC00856_LS0093	chr10:78524640|78528701:-	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	.	1.930	0.323	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	nAS	no
BSDC1_LS006	chr1:32369338|32376262:-	BSDC1	BSD domain containing 1	protein coding gene	no	ENST00000444377.5	0.076	0.449	2.079	0.429(4109)	0.517(363)	0.811(14092)	non tumor-specific	alt_5prime;exon_skip	yes
CYBA_LS006	chr16:88646197|88646520:-	CYBA	cytochrome b-245 alpha chain	protein coding gene	no	ENST00000568278.1	0.007	0.125	0.951	0.553(5296)	0.456(320)	0.392(6807)	non tumor-specific	exon_skip;intron_retention	yes
RDH8_LS009	chr19:10021438|10021534:+	RDH8	retinol dehydrogenase 8	protein coding gene	no	ENST00000591589.1;ENST00000587782.1	3.614	0.090	0.714	0.031(294)	0.019(13)	0.047(811)	non tumor-specific	alt_3prime;intron_retention	yes
UN_KIAA2013_LS0013	chr1:11922704|11922747:+	KIAA2013	KIAA2013	protein coding gene	no	.	6.191	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MLF2_LS0021	chr12:6748191|6748321:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	2.558	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEPT14P24_UP_LS0150	chr7:56371894|56374258:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	2.877	0.341	0.000	0.011(107)	0.003(2)	0(0)	non tumor-specific	nAS	no
LIAS_LS026	chr4:39470624|39471236:+	LIAS	lipoic acid synthetase	protein coding gene	no	ENST00000639614.1	1.742	1.830	1.300	0(1)	0.001(1)	0.042(738)	non tumor-specific	nAS	yes
GRIN3B_LS010	chr19:1008927|1009173:+	GRIN3B	glutamate ionotropic receptor NMDA type subunit 3B	protein coding gene	no	ENST00000234389.3	2.414	0.763	0.892	0.084(802)	0.101(71)	0.357(6208)	non tumor-specific	intron_retention	yes
UN_ABCB4_LS0006	chr7:87409392|87417312:-	ABCB4	ATP binding cassette subfamily B member 4	protein coding gene	no	.	2.345	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
NRK_LS007	chrX:105893942|105895433:+	NRK	Nik related kinase	protein coding gene	no	ENST00000243300.13;ENST00000428173.3	3.389	2.529	0.981	0.105(1005)	0.265(186)	0.238(4142)	non tumor-specific	exon_skip	yes
CFDP1_LS017	chr16:75412754|75414578:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000283882.3;ENST00000566901.5;ENST00000564286.1	169.537	108.797	99.757	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_ZNF462_LS0064	chr9:107010110|107010823:+	ZNF462	zinc finger protein 462	protein coding gene	no	.	0.219	0.044	0.000	0.027(261)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
HMGXB3_LS012	chr5:150030839|150032454:+	HMGXB3	HMG-box containing 3	protein coding gene	no	ENST00000613459.4;ENST00000503427.5;ENST00000502717.5;ENST00000514469.1;ENST00000513318.1	21.004	11.114	25.603	0.984(9425)	0.991(696)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_FASN_LS0092	chr17:82080549|82081327:+	FASN	fatty acid synthase	protein coding gene	yes	.	0.133	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RUNDC3A_LS0024	chr17:44318193|44318323:+	RUNDC3A	RUN domain containing 3A	protein coding gene	no	.	3.946	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC116345.1_LS0012	chr5:73246656|73283031:-	AC116345.1	-	lncRNA gene	no	.	3.359	0.617	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TPP1_LS0041	chr11:6613984|6614060:+	TPP1	tripeptidyl peptidase 1	protein coding gene	no	.	4.455	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
INTS8_LS047	chr8:94876489|94880118:+	INTS8	integrator complex subunit 8	protein coding gene	yes	ENST00000524333.5;ENST00000523731.5;ENST00000343161.8;ENST00000523206.5;ENST00000520526.5	41.470	14.003	55.302	0.97(9290)	0.976(685)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_PIEZO2_UP_LS0003	chr18:11310279|11323338:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	.	2.483	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
AC073288.2_LS003	chr3:170413239|170418437:+	AC073288.2	-	lncRNA gene	no	ENST00000468232.1	0.505	0.020	0.683	0.021(199)	0.003(2)	0.053(928)	non tumor-specific	nAS	yes
NAA15_LS015	chr4:139359895|139360500:+	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	protein coding gene	no	ENST00000296543.9;ENST00000398947.1	37.494	18.517	16.940	0.911(8725)	0.974(684)	0.975(16942)	non tumor-specific	nAS	yes
UN_SLC4A5_LS0014	chr2:74294368|74304489:-	SLC4A5	symbol withdrawn, see [HGNC:11030](/data/gene-symbol-report/#!/hgnc_id/HGNC:11030)	protein coding gene	no	.	0.909	0.374	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC133919.2_LS0004	chr16:90116483|90119465:+	AC133919.2	-	lncRNA gene	no	.	2.853	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KHNYN_LS0016	chr14:24434196|24436072:+	KHNYN	KH and NYN domain containing	protein coding gene	no	.	3.187	1.334	0.000	0.009(87)	0.023(16)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
BPIFA2_LS007	chr20:33178228|33179604:+	BPIFA2	BPI fold containing family A member 2	protein coding gene	no	ENST00000253362.6;ENST00000354932.5	7.321	2.979	1.134	0.122(1165)	0.123(86)	0.106(1849)	non tumor-specific	nAS	yes
UN_RHBDD1_LS0043	chr2:226980405|226981258:-	RHBDD1	rhomboid domain containing 1	protein coding gene	no	.	1.761	0.589	0.000	0.001(13)	0.017(12)	0(0)	non tumor-specific	nAS	no
AC008115.2_LS001	chr12:12669051|12684905:+	AC008115.2	-	lncRNA gene	no	ENST00000539988.1	4.485	0.007	0.839	0.004(38)	0.001(1)	0.002(42)	non tumor-specific	nAS	yes
RUFY3_LS031	chr4:70800205|70804348:+	RUFY3	RUN and FYVE domain containing 3	protein coding gene	no	.;.	2.370	0.631	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AL136317.2_LS001	chr9:66015977|66020016:-	AL136317.2	-	lncRNA gene	no	ENST00000619851.1	0.130	0.085	1.422	0.208(1994)	0.265(186)	0.367(6385)	non tumor-specific	nAS	yes
ZNHIT3_LS005	chr17:36486785|36492813:+	ZNHIT3	zinc finger HIT-type containing 3	protein coding gene	no	ENST00000619730.4;ENST00000612728.4;ENST00000619482.1	5.307	3.974	8.403	0.954(9144)	0.973(683)	0.968(16819)	non tumor-specific	alt_3prime;exon_skip	yes
MAPK10_LS048	chr4:86335156|86399747:-	MAPK10	mitogen-activated protein kinase 10	protein coding gene	yes	ENST00000503911.5	0.050	0.000	0.688	0.003(25)	0.01(7)	0.001(24)	non tumor-specific	exon_skip	yes
TCP11L2_LS019	chr12:106340998|106346286:+	TCP11L2	t-complex 11 like 2	protein coding gene	no	ENST00000299045.7	10.903	10.626	13.317	0.87(8331)	0.93(653)	0.975(16947)	non tumor-specific	exon_skip	yes
UN_RAB40A_UP_LS0007	chrX:103530833|103531110:-	RAB40A	RAB40A, member RAS oncogene family	protein coding gene	no	.	2.011	0.153	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	nAS	no
KPNA7_LS006	chr7:99193101|99195070:-	KPNA7	karyopherin subunit alpha 7	protein coding gene	no	ENST00000327442.6	2.981	1.092	0.922	0.181(1735)	0.121(85)	0.094(1640)	non tumor-specific	alt_5prime;exon_skip	yes
SSUH2_LS005	chr3:8626321|8626914:-	SSUH2	ssu-2 homolog	protein coding gene	no	ENST00000455157.6	0.325	0.000	0.720	0.003(27)	0(0)	0.045(780)	non tumor-specific	alt_5prime	yes
NR2C1_LS013	chr12:95030629|95031349:-	NR2C1	nuclear receptor subfamily 2 group C member 1	protein coding gene	no	ENST00000552791.1;ENST00000393101.7	0.107	0.136	0.868	0.364(3488)	0.299(210)	0.398(6915)	non tumor-specific	alt_3prime;intron_retention	yes
UN_DPY19L1P2_LS0015	chr7:32823221|32833008:+	DPY19L1P2	DPY19L1 pseudogene 2	pseudogene	no	.	0.884	0.279	0.000	0.024(233)	0.017(12)	0(0)	non tumor-specific	nAS	no
FAM47E-STBD1_LS008	chr4:76268813|76271568:+	FAM47E-STBD1	FAM47E-STBD1 readthrough	protein coding gene	no	ENST00000509377.1;ENST00000514140.1	4.716	3.859	4.020	0.578(5538)	0.853(599)	0.828(14386)	non tumor-specific	alt_5prime	yes
FXR2_LS006	chr17:7592157|7592254:-	FXR2	FMR1 autosomal homolog 2	protein coding gene	no	ENST00000573057.1	0.345	0.456	3.725	0.805(7716)	0.835(586)	0.908(15775)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TUBGCP2_LS0068	chr10:133300113|133300452:-	TUBGCP2	tubulin gamma complex associated protein 2	protein coding gene	no	.	1.985	0.366	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TDRD12_LS037	chr19:32826749|32827164:+	TDRD12	tudor domain containing 12	protein coding gene	no	ENST00000647536.1;ENST00000564769.2;ENST00000639142.1	13.787	0.586	0.908	0.056(537)	0.036(25)	0.189(3287)	non tumor-specific	alt_3prime;exon_skip	yes
ZZEF1_LS034	chr17:4066540|4067163:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	ENST00000381638.6;ENST00000572426.5;ENST00000570365.1	8.643	8.047	12.336	0.84(8048)	0.927(651)	0.969(16839)	non tumor-specific	alt_3prime	yes
SUN3_LS009	chr7:48006053|48007153:-	SUN3	Sad1 and UNC84 domain containing 3	protein coding gene	no	ENST00000453071.5	0.147	0.000	0.718	0.001(7)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_EXOC3L4_UP_LS0006	chr14:103097753|103098887:+	EXOC3L4	exocyst complex component 3 like 4	protein coding gene	no	.	2.765	0.262	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RNF19B_LS0008	chr1:32938523|32942252:-	RNF19B	ring finger protein 19B	protein coding gene	no	.	11.691	1.063	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAGK_LS018	chr2:71068712|71072641:+	NAGK	N-acetylglucosamine kinase	protein coding gene	no	ENST00000443872.6;ENST00000484984.1;ENST00000493102.5;ENST00000443872.6;ENST00000484984.1;ENST00000493102.5	0.035	0.035	1.293	0.774(7415)	0.712(500)	0.592(10295)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
LINC01972_LS001	chr3:194765610|194768415:-	LINC01972	long intergenic non-protein coding RNA 1972	lncRNA gene	no	ENST00000422271.1	0.163	0.000	0.686	0.002(23)	0(0)	0.001(23)	non tumor-specific	nAS	yes
UN_ENTPD5_LS0004	chr14:73958273|73958971:+	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.	5.438	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_AAMP_LS0019	chr2:218264408|218265638:+	AAMP	angio associated migratory cell protein	protein coding gene	no	.	0.884	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PCGF3_LS025	chr4:766405|766674:+	PCGF3	polycomb group ring finger 3	protein coding gene	no	ENST00000440452.5	2.556	1.292	2.085	0.647(6200)	0.674(473)	0.842(14628)	non tumor-specific	alt_3prime;intron_retention	yes
UN_DIS3L2_LS0011	chr2:232014979|232024277:+	DIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein coding gene	no	.	1.233	0.381	0.000	0.008(78)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_GALNTL6_LS0011	chr4:172156222|172229656:+	GALNTL6	polypeptide N-acetylgalactosaminyltransferase like 6	protein coding gene	no	.	2.521	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP2R3A_LS0033	chr3:136090667|136091162:+	PPP2R3A	protein phosphatase 2 regulatory subunit B''alpha	protein coding gene	no	.	1.175	0.194	0.000	0.004(42)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_PPCS_LS0008	chr1:42457350|42457452:+	PPCS	phosphopantothenoylcysteine synthetase	protein coding gene	no	.	3.643	1.404	0.000	0.038(367)	0.031(22)	0(0)	non tumor-specific	intron_retention	no
PDE1C_LS017	chr7:31879178|31880747:-	PDE1C	phosphodiesterase 1C	protein coding gene	no	ENST00000396193.5;ENST00000396191.5;ENST00000321453.11;ENST00000396184.7;ENST00000396182.6;ENST00000464881.1	3.744	2.992	3.360	0.237(2273)	0.598(420)	0.758(13172)	non tumor-specific	nAS	yes
UN_AC079921.2_UP_LS0002	chr4:39126857|39127650:+	AC079921.2	-	lncRNA gene	no	.	1.085	0.411	0.000	0.037(358)	0.056(39)	0(0)	non tumor-specific	nAS	no
ANXA5_LS006	chr4:121669724|121669954:-	ANXA5	annexin A5	protein coding gene	no	ENST00000296511.9;ENST00000501272.6;ENST00000506395.5;ENST00000515017.5;ENST00000509648.5;ENST00000515717.1	1252.048	622.945	514.617	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FP700111.1_LS0010	chr1:144720690|144725354:+	FP700111.1	-	lncRNA gene	no	.	1.626	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKCA_LS0057	chr17:66788979|66791192:+	PRKCA	protein kinase C alpha	protein coding gene	yes	.	1.736	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_ANXA10_LS0006	chr4:168160293|168162528:+	ANXA10	annexin A10	protein coding gene	no	.	10.225	4.765	0.000	0.009(91)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_TTL_LS0039	chr2:112520425|112521222:+	TTL	tubulin tyrosine ligase	protein coding gene	no	.	3.386	1.240	0.000	0.266(2552)	0.238(167)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
NPIPB2_LS012	chr16:11937668|11941838:-	NPIPB2	nuclear pore complex interacting protein family member B2	protein coding gene	no	ENST00000538896.5	1.287	0.231	0.714	0.091(875)	0.073(51)	0.184(3192)	non tumor-specific	alt_5prime;exon_skip	yes
NBEA_LS009	chr13:35070105|35070719:+	NBEA	neurobeachin	protein coding gene	no	ENST00000400445.7;ENST00000310336.8;ENST00000629018.2;ENST00000379939.6;ENST00000497540.1	1.089	1.706	2.176	0.502(4811)	0.697(489)	0.747(12985)	non tumor-specific	nAS	yes
COL18A1_LS018	chr21:45480156|45480467:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	141.548	133.869	106.760	0.984(9429)	0.996(699)	0.978(16994)	non tumor-specific	exon_skip	yes
UN_TMEM132B_LS0010	chr12:125331687|125349452:+	TMEM132B	transmembrane protein 132B	protein coding gene	no	.	0.693	0.126	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
AMN1_LS007	chr12:31702007|31708918:-	AMN1	antagonist of mitotic exit network 1 homolog	protein coding gene	no	ENST00000457428.6	0.143	0.041	0.800	0.071(685)	0.073(51)	0.289(5026)	non tumor-specific	alt_5prime;exon_skip	yes
AKR1D1_LS008	chr7:138097943|138106608:+	AKR1D1	aldo-keto reductase family 1 member D1	protein coding gene	no	ENST00000411726.6	0.300	0.715	2.532	0.03(285)	0.088(62)	0.012(201)	non tumor-specific	exon_skip	yes
UN_LINC02532_LS0090	chr6:106756642|106768180:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	.	2.661	1.658	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
ABCD3_LS014	chr1:94480606|94482589:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	.;.	2.546	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF767P_LS0039	chr7:149570160|149582830:+	ZNF767P	zinc finger family member 767, pseudogene	pseudogene	no	.	2.020	0.241	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
CYP19A1_LS012	chr15:51242950|51278008:-	CYP19A1	cytochrome P450 family 19 subfamily A member 1	protein coding gene	no	ENST00000405011.6	6.315	1.284	0.906	0.001(8)	0.003(2)	0.009(149)	non tumor-specific	nAS	yes
POLR1A_LS029	chr2:86078284|86080816:-	POLR1A	RNA polymerase I subunit A	protein coding gene	no	ENST00000263857.10;ENST00000409681.1;ENST00000486964.5	14.825	6.490	5.518	0.874(8376)	0.916(643)	0.936(16266)	non tumor-specific	nAS	yes
UN_AC090227.1_LS0008	chr18:49800081|49802728:+	AC090227.1	-	protein coding gene	no	.	4.886	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
METTL3_LS028	chr14:21503881|21508136:-	METTL3	methyltransferase like 3	protein coding gene	no	ENST00000377543.3	0.161	0.146	0.750	0.086(827)	0.073(51)	0.255(4440)	non tumor-specific	exon_skip	yes
UN_HDAC5_LS0026	chr17:44088619|44091270:-	HDAC5	histone deacetylase 5	protein coding gene	no	.	6.326	0.020	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
KCTD5_LS007	chr16:2697997|2699821:+	KCTD5	potassium channel tetramerization domain containing 5	protein coding gene	no	ENST00000301738.8	68.343	35.296	17.821	0.991(9497)	0.994(698)	0.979(17009)	non tumor-specific	exon_skip	yes
HIRA_LS026	chr22:19410778|19431440:-	HIRA	histone cell cycle regulator	protein coding gene	yes	ENST00000340170.8;ENST00000263208.5	4.482	3.577	8.220	0.922(8831)	0.973(683)	0.972(16897)	non tumor-specific	nAS	yes
NUDT22_LS015	chr11:64227666|64229478:+	NUDT22	nudix hydrolase 22	protein coding gene	no	.;.	7.960	1.181	0.000	0.011(101)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SERPINB7_LS0013	chr18:63801012|63803626:+	SERPINB7	serpin family B member 7	protein coding gene	no	.	6.560	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MT-TY_UP_LS0007	chrM:6212|8465:-	MT-TY	mitochondrially encoded tRNA-Tyr (UAU/C)	small non-coding RNA gene	no	.	301.465	212.735	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANO3_LS013	chr11:26542068|26547416:+	ANO3	anoctamin 3	protein coding gene	no	ENST00000525139.5;ENST00000256737.7;ENST00000531568.1;ENST00000529242.1	4.873	1.167	1.305	0.071(680)	0.164(115)	0.289(5024)	non tumor-specific	nAS	yes
AP1M1_LS001	chr19:16197973|16198011:+	AP1M1	adaptor related protein complex 1 subunit mu 1	protein coding gene	no	ENST00000590263.5	0.044	0.009	0.619	0.054(514)	0.053(37)	0.01(175)	non tumor-specific	intron_retention	yes
CXorf38_LS003	chrX:40636712|40637007:-	CXorf38	chromosome X open reading frame 38	protein coding gene	no	ENST00000378426.5;ENST00000327877.9;ENST00000378421.1	26.965	14.562	14.941	0.992(9503)	0.994(698)	0.978(16998)	non tumor-specific	exon_skip	yes
UN_PCBP1-AS1_LS0029	chr2:70085903|70086882:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	.	1.098	0.159	0.000	0.001(14)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MT-ATP6_LS0048	chrM:8920|9026:+	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	protein coding gene	no	.	6253.089	607.543	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_GTF2IP13_LS0095	chr7:45813311|45813509:+	GTF2IP13	general transcription factor IIi pseudogene 13	pseudogene	no	.	3.057	0.576	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMPRSS9_LS020	chr19:2424257|2425002:+	TMPRSS9	transmembrane serine protease 9	protein coding gene	no	ENST00000649857.1;ENST00000648592.1;ENST00000613480.1;ENST00000332578.8	7.344	0.658	1.349	0.048(456)	0.038(27)	0.252(4386)	non tumor-specific	alt_3prime	yes
UN_OR2A9P_UP_LS0007	chr7:144185839|144266959:+	OR2A9P	olfactory receptor family 2 subfamily A member 9 pseudogene	pseudogene	no	.	0.106	0.027	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC073264.3_UP_LS0004	chr7:143604879|143607793:+	AC073264.3	-	pseudogene	no	.	18.421	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EBF3_LS001	chr10:129837960|129839083:-	EBF3	EBF transcription factor 3	protein coding gene	yes	ENST00000440978.1	1.340	0.413	2.223	0.174(1668)	0.291(204)	0.572(9946)	non tumor-specific	exon_skip	yes
BLOC1S6_LS006	chr15:45587525|45605428:+	BLOC1S6	biogenesis of lysosomal organelles complex 1 subunit 6	protein coding gene	no	ENST00000567740.5;ENST00000566184.1	0.168	0.159	2.378	0.78(7469)	0.862(605)	0.813(14133)	non tumor-specific	nAS	yes
UN_BPGM_UP_LS0015	chr7:134536772|134575821:+	BPGM	bisphosphoglycerate mutase	protein coding gene	no	.	124.854	31.874	0.000	0.011(108)	0.023(16)	0(0)	non tumor-specific	nAS	no
PHYH_LS013	chr10:13298245|13299420:-	PHYH	phytanoyl-CoA 2-hydroxylase	protein coding gene	no	ENST00000453759.6	0.104	0.108	0.706	0.149(1425)	0.264(185)	0.114(1989)	non tumor-specific	exon_skip	yes
ZDHHC8_LS002	chr22:20132051|20139194:+	ZDHHC8	zinc finger DHHC-type palmitoyltransferase 8	protein coding gene	no	ENST00000334554.11;ENST00000320602.11;ENST00000405930.3	9.367	5.945	21.405	0.957(9170)	0.969(680)	0.978(16994)	non tumor-specific	alt_3prime;exon_skip	yes
ACER1_LS003	chr19:6309834|6312149:-	ACER1	alkaline ceramidase 1	protein coding gene	no	ENST00000301452.4	7.035	12.509	1.214	0.063(607)	0.127(89)	0.322(5595)	non tumor-specific	nAS	yes
ATP6V0A1_LS017	chr17:42478589|42478927:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	ENST00000592324.1	0.160	0.061	0.857	0.291(2791)	0.39(274)	0.389(6758)	non tumor-specific	exon_skip;intron_retention	yes
RBM42_LS018	chr19:35634373|35637442:+	RBM42	RNA binding motif protein 42	protein coding gene	no	ENST00000589559.5	0.105	0.198	0.653	0.864(8278)	0.882(619)	0.014(236)	non tumor-specific	exon_skip	yes
EIF2B1_LS014	chr12:123630533|123632345:-	EIF2B1	eukaryotic translation initiation factor 2B subunit alpha	protein coding gene	no	ENST00000424014.6;ENST00000539951.5;ENST00000534960.5;ENST00000537073.1;ENST00000452159.6;ENST00000543940.1	51.076	30.480	45.427	0.993(9513)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_TACSTD2_LS0041	chr1:58575940|58576233:-	TACSTD2	tumor associated calcium signal transducer 2	protein coding gene	yes	.	83.594	61.177	0.000	0.031(295)	0.02(14)	0(0)	non tumor-specific	nAS	no
DGKA_LS019	chr12:55932909|55933505:+	DGKA	diacylglycerol kinase alpha	protein coding gene	no	ENST00000550115.5	0.145	0.044	0.662	0.023(225)	0.014(10)	0.051(883)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LCT_LS015	chr2:135824003|135829593:-	LCT	lactase	protein coding gene	no	ENST00000264162.6	4.051	3.154	0.939	0.004(43)	0.011(8)	0.01(166)	non tumor-specific	nAS	yes
UMODL1_LS021	chr21:42113118|42113573:+	UMODL1	uromodulin like 1	protein coding gene	no	ENST00000475047.1	0.635	0.000	0.677	0(4)	0(0)	0.003(44)	non tumor-specific	exon_skip	yes
LRP1_LS093	chr12:57211588|57211750:+	LRP1	LDL receptor related protein 1	protein coding gene	no	ENST00000243077.7;ENST00000556356.1	365.542	254.653	401.037	0.994(9520)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
ASPHD1_LS006	chr16:29901920|29904852:+	ASPHD1	aspartate beta-hydroxylase domain containing 1	protein coding gene	no	ENST00000563177.5;ENST00000483405.5;ENST00000308748.9;ENST00000414952.6;ENST00000566693.1	22.085	11.390	4.051	0.917(8786)	0.819(575)	0.776(13482)	non tumor-specific	alt_5prime;exon_skip	yes
LINC00535_LS011	chr8:93659579|93663346:-	LINC00535	long intergenic non-protein coding RNA 535	lncRNA gene	no	ENST00000501400.1	1.418	0.381	0.705	0.001(5)	0.003(2)	0.018(320)	non tumor-specific	nAS	yes
UN_CCNG1_LS0005	chr5:163441331|163441889:+	CCNG1	cyclin G1	protein coding gene	no	.	10.777	6.648	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
NIPAL4_LS008	chr5:157468812|157471657:+	NIPAL4	NIPA like domain containing 4	protein coding gene	no	ENST00000435489.6;ENST00000311946.7;ENST00000519150.1	7.336	4.775	2.491	0.283(2715)	0.214(150)	0.507(8821)	non tumor-specific	exon_skip	yes
UN_POTEKP_UP_LS0023	chr2:131565044|131568443:+	POTEKP	POTE ankyrin domain family member K, pseudogene	pseudogene	no	.	1.555	1.130	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
MBIP_LS001	chr14:36299187|36300785:-	MBIP	MAP3K12 binding inhibitory protein 1	protein coding gene	no	ENST00000318473.11	0.874	0.911	6.229	0.876(8393)	0.896(629)	0.944(16416)	non tumor-specific	alt_3prime	yes
UN_HSPB8_LS0019	chr12:119182179|119182874:-	HSPB8	heat shock protein family B (small) member 8	protein coding gene	no	.	3.631	0.214	0.000	0.013(125)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TMEM220_LS0003	chr17:10704170|10723270:-	TMEM220	transmembrane protein 220	protein coding gene	no	.	1.586	0.613	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_MIR99AHG_LS0005	chr21:15965407|15972311:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	.	2.932	0.387	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IFNA5_UP_LS0010	chr9:21321633|21324076:-	IFNA5	interferon alpha 5	protein coding gene	no	.	1.005	0.870	0.000	0.23(2201)	0.342(240)	0(0)	non tumor-specific	nAS	no
AC093772.1_LS007	chr4:127415162|127470435:-	AC093772.1	-	lncRNA gene	no	ENST00000504050.5	0.110	0.000	0.860	0.001(6)	0(0)	0(2)	non tumor-specific	nAS	yes
AP002026.1_LS009	chr4:99204427|99252835:+	AP002026.1	-	lncRNA gene	no	ENST00000506454.1	3.022	0.000	0.709	0(4)	0(0)	0.144(2507)	non tumor-specific	nAS	yes
UN_LINC01965_LS0005	chr2:104053620|104072171:+	LINC01965	long intergenic non-protein coding RNA 1965	lncRNA gene	no	.	1.927	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AMFR_LS007	chr16:56386022|56401733:-	AMFR	autocrine motility factor receptor	protein coding gene	no	ENST00000492830.5;ENST00000568762.1	2.019	1.688	0.927	0.567(5430)	0.651(457)	0.477(8297)	non tumor-specific	exon_skip	yes
NEK10_LS031	chr3:27291390|27291484:-	NEK10	NIMA related kinase 10	protein coding gene	no	ENST00000429845.6;ENST00000574215.5;ENST00000341435.9;ENST00000424275.1	1.925	1.135	1.260	0.071(681)	0.231(162)	0.478(8309)	non tumor-specific	nAS	yes
ARSG_LS010	chr17:68356804|68359488:+	ARSG	arylsulfatase G	protein coding gene	no	ENST00000581032.1	0.323	0.085	0.719	0.198(1897)	0.11(77)	0.122(2120)	non tumor-specific	nAS	yes
UN_XRRA1_LS0082	chr11:74934483|74935221:+	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	.	4.612	0.356	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	nAS	no
F2_LS018	chr11:46728837|46729380:+	F2	coagulation factor II, thrombin	protein coding gene	no	ENST00000311907.9	117.780	312.014	0.911	0.111(1060)	0.097(68)	0.269(4680)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_OSBPL1A_LS0019	chr18:24181279|24196136:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	.	1.940	0.261	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FYB1_LS0006	chr5:39124278|39126005:-	FYB1	FYN binding protein 1	protein coding gene	no	.	1.446	0.645	0.000	0.006(60)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SLC2A4RG_LS0094	chr20:63743045|63743080:+	SLC2A4RG	SLC2A4 regulator	protein coding gene	no	.	16.353	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MAGEB18_LS002	chrX:26140053|26140180:+	MAGEB18	MAGE family member B18	protein coding gene	no	ENST00000325250.1	2.391	0.000	0.798	0.006(55)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_MTIF3_LS0007	chr13:27437273|27438087:-	MTIF3	mitochondrial translational initiation factor 3	protein coding gene	no	.	6.934	0.269	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
IVL_LS011	chr1:152911165|152911346:+	IVL	involucrin	protein coding gene	no	.;.	24.738	14.469	0.000	0.001(8)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CSGALNACT1_LS025	chr8:19601865|19682473:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000332246.10	0.307	0.136	0.938	0.095(907)	0.134(94)	0.083(1443)	non tumor-specific	alt_5prime	yes
VWA3A_LS019	chr16:22119027|22121514:+	VWA3A	von Willebrand factor A domain containing 3A	protein coding gene	no	ENST00000566668.1;ENST00000566668.1;ENST00000566668.1	0.384	0.017	0.974	0.016(158)	0.026(18)	0.109(1903)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC012363.1_LS0001	chr2:120175857|120180139:-	AC012363.1	-	lncRNA gene	no	.	2.966	0.537	0.000	0.026(249)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC093227.2_LS006	chr19:37708009|37719015:-	AC093227.2	-	protein coding gene	no	ENST00000585547.5	0.371	0.162	0.677	0.003(32)	0.007(5)	0.005(89)	non tumor-specific	nAS	yes
UN_CASQ2_LS0001	chr1:115705292|115705403:-	CASQ2	calsequestrin 2	protein coding gene	no	.	3.208	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
CAPSL_LS003	chr5:35910543|35920984:-	CAPSL	calcyphosine like	protein coding gene	no	ENST00000397367.6;ENST00000397366.5;ENST00000513623.5;ENST00000514524.2	5.368	3.342	1.783	0.269(2576)	0.466(327)	0.19(3297)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ATP13A4_LS0004	chr3:193404726|193407313:-	ATP13A4	ATPase 13A4	protein coding gene	no	.	0.675	0.886	0.000	0.008(75)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SEC14L1_LS274	chr17:77215922|77216388:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	7.673	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_IGHEP1_UP_LS0189	chr14:105743070|105775027:-	IGHEP1	immunoglobulin heavy constant epsilon P1 (pseudogene)	no	no	.	17.166	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_Z98755.1_UP_LS0012	chr6:102820423|102820687:+	Z98755.1	-	pseudogene	no	.	1.331	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HNRNPA1_LS018	chr12:54282874|54283812:+	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	ENST00000546500.5;ENST00000547708.5;ENST00000547566.5;ENST00000330752.12;ENST00000550482.1;ENST00000546500.5;ENST00000547708.5;ENST00000547566.5;ENST00000330752.12;ENST00000550482.1	2121.262	967.705	920.222	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PEBP1_LS0003	chr12:118136162|118144960:-	PEBP1	phosphatidylethanolamine binding protein 1	protein coding gene	yes	.	0.496	0.558	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_E2F2_LS0008	chr1:23521069|23521837:-	E2F2	E2F transcription factor 2	protein coding gene	yes	.	3.300	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
ZAN_LS011	chr7:100751266|100751712:+	ZAN	zonadhesin	protein coding gene	no	ENST00000613979.4;ENST00000620868.4;ENST00000538115.5;ENST00000546213.5;ENST00000542585.5;ENST00000620596.4;ENST00000618565.4;ENST00000546292.2	3.581	0.000	0.578	0.005(49)	0(0)	0.002(33)	non tumor-specific	nAS	yes
PNCK_LS037	chrX:153674854|153686501:-	PNCK	pregnancy up-regulated nonubiquitous CaM kinase	protein coding gene	no	.;.;.	1.714	0.000	0.000	0.008(77)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC23A1_LS025	chr5:139382605|139384358:-	SLC23A1	solute carrier family 23 member 2	protein coding gene	no	.;.	1.975	2.322	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL008707.1_UP_LS0003	chrX:125206171|125213131:-	AL008707.1	-	pseudogene	no	.	3.853	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CLASRP_LS008	chr19:45053177|45056450:+	CLASRP	CLK4 associating serine/arginine rich protein	protein coding gene	no	ENST00000221455.7;ENST00000391953.8;ENST00000391952.7;ENST00000544944.6;ENST00000587112.1;ENST00000588016.1	62.545	31.645	124.151	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_HHAT_LS0043	chr1:210500746|210503594:-	HHAT	hedgehog acyltransferase	protein coding gene	no	.	9.801	0.410	0.000	0.007(71)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00347_LS002	chr13:74552903|74554613:+	LINC00347	long intergenic non-protein coding RNA 347	lncRNA gene	no	ENST00000594461.2;ENST00000596240.5	0.146	0.000	0.671	0.001(9)	0(0)	0.006(100)	non tumor-specific	nAS	yes
UN_CFAP44_LS0025	chr3:113338736|113341744:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	.	0.964	0.117	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LMO4_LS0038	chr1:87336297|87339536:+	LMO4	LIM domain only 4	protein coding gene	yes	.	3.434	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NUCB2_LS0054	chr11:17334536|17336960:+	NUCB2	nucleobindin 2	protein coding gene	no	.	4.434	0.595	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HSP90AB1_LS015	chr6:44250154|44250291:+	HSP90AB1	heat shock protein 90 alpha family class B member 1	protein coding gene	no	ENST00000620073.4;ENST00000353801.7;ENST00000371646.9;ENST00000371554.2	2057.210	1002.073	1088.570	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MOCS2_LS009	chr5:53100534|53102097:-	MOCS2	molybdenum cofactor synthesis 2	protein coding gene	no	ENST00000361377.8;ENST00000361377.8	0.169	0.191	1.390	0.711(6810)	0.832(584)	0.568(9868)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SLC2A11_LS023	chr22:23877869|23882459:+	SLC2A11	solute carrier family 2 member 11	protein coding gene	no	ENST00000345044.10;ENST00000398356.6;ENST00000467660.5;ENST00000611880.4;ENST00000405340.6;ENST00000316185.8;ENST00000472526.1	1.705	3.278	2.918	0.697(6677)	0.838(588)	0.893(15526)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_UBQLN1_LS0014	chr9:83668631|83669185:-	UBQLN1	ubiquilin 1	protein coding gene	no	.	4.881	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_OAS1_LS0010	chr12:112908769|112917708:-	OAS1	2'-5'-oligoadenylate synthetase 1	protein coding gene	no	.	0.732	0.531	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SNRNP200_LS0027	chr2:96278358|96278473:-	SNRNP200	small nuclear ribonucleoprotein U5 subunit 200	protein coding gene	no	.	14.327	4.861	0.000	0.009(82)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_FP236383.2_UP_LS0397	chr21:8401666|8445628:-	FP236383.2	-	lncRNA gene	no	.	389.491	15.892	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KLK11_LS0045	chr19:51027517|51027781:-	KLK11	kallikrein related peptidase 11	protein coding gene	no	.	2.487	1.862	0.000	0.005(44)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NUP205_LS0006	chr7:135578930|135584832:+	NUP205	nucleoporin 205	protein coding gene	no	.	4.151	0.278	0.000	0.008(76)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC004160.1_LS0017	chr7:11322424|11325758:+	AC004160.1	-	lncRNA gene	no	.	4.471	0.889	0.000	0.005(50)	0.056(39)	0(0)	non tumor-specific	nAS	no
DVL1_LS012	chr1:1340177|1340247:-	DVL1	dishevelled segment polarity protein 1	protein coding gene	no	ENST00000378891.9;ENST00000378888.9;ENST00000633096.1	93.781	59.420	108.386	0.994(9525)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_NDUFB2P1_UP_LS0003	chr4:154626813|154636329:+	NDUFB2P1	NADH:ubiquinone oxidoreductase subunit B2 pseudogene 2	pseudogene	no	.	1.328	0.036	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
HDAC3_LS002	chr5:141625365|141625685:-	HDAC3	histone deacetylase 3	protein coding gene	yes	ENST00000469550.6;ENST00000305264.7;ENST00000459727.5;ENST00000491581.5;ENST00000486618.1	116.237	62.376	118.394	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CABYR_LS001	chr18:24139118|24139951:+	CABYR	calcium binding tyrosine phosphorylation regulated	protein coding gene	no	ENST00000585037.5	0.005	0.000	0.678	0.013(127)	0.001(1)	0.001(19)	non tumor-specific	exon_skip	yes
SYTL3_LS005	chr6:158662812|158665387:+	SYTL3	synaptotagmin like 3	protein coding gene	no	.;.	1.649	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC036214.1_LS005	chr8:79820611|79821128:-	AC036214.1	-	lncRNA gene	no	ENST00000517365.1	6.903	0.279	1.263	0.011(109)	0.003(2)	0.187(3253)	non tumor-specific	nAS	yes
UN_DHX8_LS0063	chr17:43529228|43529504:-	DHX8	DEAH-box helicase 8	protein coding gene	no	.	46.261	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AC246787.2_UP_LS0977	chr14:105668983|105742103:+	AC246787.2	-	lncRNA gene	no	.	24.448	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FHAD1_LS0038	chr1:15317413|15322908:-	FHAD1	forkhead associated phosphopeptide binding domain 1	protein coding gene	no	.	3.490	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	nAS	no
DGKI_LS016	chr7:137469619|137487610:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000460662.2	0.738	0.131	0.827	0.081(780)	0.098(69)	0.017(303)	non tumor-specific	exon_skip	yes
UN_VCX3B_LS0004	chrX:8465999|8466240:+	VCX3B	variable charge X-linked 3B	protein coding gene	no	.	12.879	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF254_LS0040	chr19:24049548|24055982:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	2.985	0.293	0.000	0.016(157)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
AC021534.1_LS002	chr17:79135086|79136018:+	AC021534.1	-	lncRNA gene	no	ENST00000583980.1	2.439	0.011	0.779	0.01(92)	0.003(2)	0.003(53)	non tumor-specific	nAS	yes
UN_DTNBP1_LS0016	chr6:15531508|15537714:+	DTNBP1	dystrobrevin binding protein 1	protein coding gene	no	.	1.222	0.041	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITIH4_LS002	chr3:52814071|52814209:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000441637.2;ENST00000491663.5	100.394	484.041	20.992	0.474(4538)	0.54(379)	0.971(16870)	non tumor-specific	intron_retention	yes
APC2_LS007	chr19:1453611|1455149:+	APC2	solute carrier family 25 member 23	protein coding gene	no	ENST00000587869.5;ENST00000590877.5;ENST00000590469.5;ENST00000233607.6;ENST00000593146.1;ENST00000535453.5;ENST00000238483.5	5.073	2.497	9.558	0.099(951)	0.02(14)	0.318(5530)	non tumor-specific	nAS	yes
PLXNB1_LS035	chr3:48418363|48418449:-	PLXNB1	plexin B1	protein coding gene	yes	ENST00000296440.10;ENST00000358536.8;ENST00000456774.5;ENST00000449094.5;ENST00000484485.5;ENST00000462738.1	29.876	23.540	55.925	0.971(9303)	0.99(695)	0.956(16617)	non tumor-specific	exon_skip	yes
UN_AC084125.3_UP_LS0004	chr8:144510903|144519834:+	AC084125.3	-	lncRNA gene	no	.	2.996	0.215	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
VPS13D_LS031	chr1:12314327|12318072:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4;ENST00000011700.10;ENST00000646917.1;ENST00000460333.5;ENST00000487188.1	7.706	8.268	10.801	0.801(7671)	0.933(655)	0.961(16706)	non tumor-specific	exon_skip	yes
C2orf80_LS005	chr2:208165815|208171988:-	C2orf80	chromosome 2 open reading frame 80	protein coding gene	no	ENST00000428015.5;ENST00000428015.5	0.426	0.119	10.123	0.066(631)	0.009(6)	0.143(2480)	non tumor-specific	alt_5prime;exon_skip	yes
DENND4C_LS034	chr9:19350879|19352073:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000434457.6;ENST00000602925.5;ENST00000380437.8;ENST00000494124.2;ENST00000380427.5;ENST00000361024.6;ENST00000380424.1	22.141	21.062	18.607	0.931(8920)	0.983(690)	0.968(16826)	non tumor-specific	exon_skip	yes
UN_AC069154.1_UP_LS0021	chr2:119695525|119696980:+	AC069154.1	-	pseudogene	no	.	2.063	0.787	0.000	0.021(202)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PLIN4_LS0034	chr19:4511711|4512504:-	PLIN4	perilipin 4	protein coding gene	no	.	9.865	23.836	0.000	0.003(31)	0.016(11)	0(0)	non tumor-specific	intron_retention	no
SLC52A2_LS017	chr8:144358900|144359184:+	SLC52A2	solute carrier family 52 member 2	protein coding gene	no	ENST00000527078.5;ENST00000534725.5;ENST00000527078.5;ENST00000534725.5	0.918	0.727	4.569	0.796(7624)	0.845(593)	0.919(15967)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_CORO2B_UP_LS0003	chr15:68470529|68471676:+	CORO2B	coronin 2B	protein coding gene	no	.	4.392	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
SLC38A6_LS012	chr14:61015956|61019541:+	SLC38A6	solute carrier family 38 member 6	protein coding gene	no	ENST00000354886.6;ENST00000267488.8;ENST00000525723.6;ENST00000491344.7;ENST00000451406.5;ENST00000527591.5;ENST00000529345.6;ENST00000524402.6;ENST00000526105.5;ENST00000528350.5;ENST00000554072.1	4.300	2.660	8.025	0.955(9149)	0.97(681)	0.966(16786)	non tumor-specific	exon_skip	yes
UN_OTULINL_LS0004	chr5:14590793|14591552:+	OTULINL	OTU deubiquitinase with linear linkage specificity like	protein coding gene	no	.	0.375	0.293	0.000	0.006(54)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
NRK_LS003	chrX:105880255|105881708:+	NRK	Nik related kinase	protein coding gene	no	ENST00000243300.13;ENST00000536164.5;ENST00000428173.3	3.568	2.594	1.046	0.097(925)	0.255(179)	0.257(4466)	non tumor-specific	exon_skip	yes
FBN1_LS059	chr15:48515527|48516183:-	FBN1	fibrillin 1	protein coding gene	no	ENST00000316623.9	13.712	11.066	6.285	0.681(6526)	0.876(615)	0.852(14814)	non tumor-specific	nAS	yes
UN_ADM2_LS0001	chr22:50481599|50481837:+	ADM2	adrenomedullin 2	protein coding gene	no	.	0.930	0.099	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
LRSAM1_LS009	chr9:127455054|127455576:+	LRSAM1	leucine rich repeat and sterile alpha motif containing 1	protein coding gene	no	ENST00000300417.10;ENST00000373324.8;ENST00000323301.8;ENST00000373322.1	22.398	17.402	16.729	0.968(9273)	0.99(695)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NEK7_LS0004	chr1:198157276|198253040:+	NEK7	NIMA related kinase 7	protein coding gene	no	.	1.938	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CYHR1_LS0017	chr8:144451829|144452359:-	CYHR1	cysteine and histidine rich 1	protein coding gene	no	.	5.814	0.438	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NTF3_LS005	chr12:5509832|5512117:+	NTF3	neurotrophin 3	protein coding gene	no	ENST00000535299.5	0.532	0.166	0.892	0.027(255)	0.009(6)	0.242(4199)	non tumor-specific	alt_5prime;exon_skip	yes
PGGHG_LS015	chr11:292677|292886:+	PGGHG	protein-glucosylgalactosylhydroxylysine glucosidase	protein coding gene	no	ENST00000474221.5;ENST00000409548.6;ENST00000409655.5;ENST00000409479.5;ENST00000476372.1	50.789	12.523	49.464	0.974(9336)	0.983(690)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NMRK1_LS031	chr9:75087868|75088008:-	NMRK1	nicotinamide riboside kinase 1	protein coding gene	no	ENST00000490321.1	1.251	0.548	3.843	0.817(7824)	0.879(617)	0.935(16254)	non tumor-specific	intron_retention	yes
UN_IGLJ4_UP_LS0105	chr22:22901353|22906605:+	IGLJ4	immunoglobulin lambda joining 4 (non-functional)	no	no	.	1823.259	303.155	0.000	0.012(118)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_TOB1_LS0007	chr17:50863266|50863491:+	TOB1	transducer of ERBB2, 1	protein coding gene	no	.	2.183	0.605	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
HERC4_LS043	chr10:68044558|68072883:-	HERC4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein coding gene	no	.;.	2.886	0.998	0.000	0.021(197)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
HERC3_LS007	chr4:88598087|88605795:+	HERC3	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein coding gene	no	ENST00000431413.5;ENST00000422770.5	0.246	0.402	1.454	0.434(4158)	0.725(509)	0.701(12182)	non tumor-specific	exon_skip	yes
SMG1P4_LS025	chr16:21909939|21911235:-	SMG1P4	SMG1 pseudogene 4	pseudogene	no	ENST00000523028.5;ENST00000381448.8;ENST00000517529.1	8.738	2.334	0.628	0.906(8676)	0.906(636)	0.044(764)	non tumor-specific	nAS	yes
UN_SCG2_UP_LS0030	chr2:223717900|223720873:-	SCG2	secretogranin II	protein coding gene	no	.	3.010	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CD68_LS0007	chr17:7579726|7580711:+	CD68	CD68 molecule	protein coding gene	no	.	13.299	6.948	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
SLC43A1_LS025	chr11:57501329|57513958:-	SLC43A1	solute carrier family 43 member 1	protein coding gene	no	ENST00000278426.7;ENST00000528450.5;ENST00000530159.5;ENST00000533066.5;ENST00000533263.1;ENST00000278426.7;ENST00000528450.5;ENST00000530159.5;ENST00000533066.5;ENST00000533263.1	9.185	9.176	11.011	0.864(8274)	0.97(681)	0.953(16571)	non tumor-specific	alt_3prime;exon_skip	yes
ECD_LS007	chr10:73139737|73146276:-	ECD	SEM1 26S proteasome complex subunit	protein coding gene	no	ENST00000372979.8;ENST00000484976.6;ENST00000454759.6	56.411	32.354	30.883	0.994(9522)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
STAU2_LS010	chr8:73561539|73582770:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000518981.5	0.240	0.093	0.812	0.162(1556)	0.108(76)	0.343(5962)	non tumor-specific	exon_skip	yes
UN_RF00100_UP_LS0023	chr6:52726994|52759609:+	RF00100	-	small non-coding RNA gene	no	.	4.573	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BX322639.1_UP_LS0001	chr10:42405281|42405510:-	BX322639.1	-	pseudogene	no	.	2.114	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PSMC1P6_UP_LS0002	chr3:87731750|87945822:-	PSMC1P6	proteasome 26S subunit, ATPase 1 pseudogene 6	pseudogene	no	.	1.956	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
GSG1_LS001	chr12:13085243|13087152:-	GSG1	trafficking protein particle complex 8	protein coding gene	no	ENST00000337630.10;ENST00000396302.7;ENST00000457134.6;ENST00000432710.6;ENST00000537302.5;ENST00000351606.10	3.334	0.468	0.970	0.039(375)	0.087(61)	0.252(4383)	non tumor-specific	nAS	yes
UN_G2E3-AS1_LS0008	chr14:30457387|30472380:-	G2E3-AS1	G2E3 antisense RNA 1	lncRNA gene	no	.	0.879	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM202-AS1_LS001	chr15:72421601|72473875:-	TMEM202-AS1	TMEM202 antisense RNA 1	lncRNA gene	no	ENST00000562573.1	1.035	0.000	0.810	0.001(5)	0(0)	0.007(130)	non tumor-specific	nAS	yes
UN_GTF2E1_LS0005	chr3:120742971|120750523:+	GTF2E1	general transcription factor IIE subunit 1	protein coding gene	no	.	0.971	0.169	0.000	0.033(319)	0.034(24)	0(0)	non tumor-specific	alt_5prime	no
FRAS1_LS075	chr4:78526657|78534449:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000512123.3	6.828	7.242	2.755	0.567(5428)	0.772(542)	0.718(12484)	non tumor-specific	exon_skip	yes
LINC01184_LS020	chr5:128082194|128082735:-	LINC01184	long intergenic non-protein coding RNA 1184	lncRNA gene	no	ENST00000508878.5	1.805	0.971	0.833	0.343(3282)	0.301(211)	0.419(7281)	non tumor-specific	nAS	yes
SNTG1_LS020	chr8:50450729|50502778:+	SNTG1	syntrophin gamma 1	protein coding gene	no	ENST00000518864.5;ENST00000642720.1;ENST00000642164.1;ENST00000642286.1;ENST00000643999.1;ENST00000522124.5;ENST00000647073.1;ENST00000644469.1;ENST00000644723.1;ENST00000517473.5;ENST00000642826.1;ENST00000643740.1;ENST00000647273.1;ENST00000520825.5	6.483	0.548	3.158	0.087(832)	0.01(7)	0.182(3168)	non tumor-specific	exon_skip	yes
AP3D1_LS025	chr19:2117367|2118601:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	ENST00000345016.9;ENST00000643116.2;ENST00000355272.10;ENST00000644728.1;ENST00000591631.2;ENST00000586177.1	73.140	44.167	49.357	0.992(9500)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
AP002478.2_LS001	chr18:3770066|3770924:-	AP002478.2	-	lncRNA gene	no	ENST00000584060.1	0.055	0.000	1.134	0(3)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_ZNF785_LS0005	chr16:30578568|30579433:+	ZNF785	zinc finger protein 785	protein coding gene	no	.	1.319	0.335	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL7A1_LS100	chr3:48584945|48585036:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000328333.12	8.856	2.282	5.858	0.51(4889)	0.376(264)	0.888(15433)	non tumor-specific	exon_skip	yes
GPRC5B_LS008	chr16:19872846|19880970:-	GPRC5B	G protein-coupled receptor class C group 5 member B	protein coding gene	no	ENST00000562469.5	0.144	0.200	0.957	0.042(406)	0.031(22)	0.067(1167)	non tumor-specific	exon_skip	yes
ACAP1_LS001	chr17:7336787|7337263:+	ACAP1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein coding gene	no	ENST00000570457.6	0.037	0.040	0.953	0.209(2006)	0.209(147)	0.127(2202)	non tumor-specific	alt_3prime;exon_skip	yes
BRINP3_LS011	chr1:190477581|190478004:-	BRINP3	BMP/retinoic acid inducible neural specific 3	protein coding gene	no	ENST00000633243.1	1.485	0.078	0.911	0.004(36)	0.001(1)	0.039(683)	non tumor-specific	nAS	yes
UN_GAB2_LS0067	chr11:78280901|78365267:-	GAB2	GRB2 associated binding protein 2	protein coding gene	yes	.	1.151	0.575	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
AL513327.2_LS002	chr1:33359074|33363066:+	AL513327.2	-	lncRNA gene	no	ENST00000432703.1	0.253	0.027	0.673	0.016(153)	0.006(4)	0.04(697)	non tumor-specific	nAS	yes
STK11IP_LS017	chr2:219607137|219608047:+	STK11IP	serine/threonine kinase 11 interacting protein	protein coding gene	no	ENST00000456909.5;ENST00000475396.5	19.104	9.755	17.502	0.975(9344)	0.97(681)	0.978(17008)	non tumor-specific	nAS	yes
HDAC8_LS023	chrX:72474729|72488933:-	HDAC8	histone deacetylase 8	protein coding gene	no	ENST00000439122.7;ENST00000648036.1;ENST00000650126.1;ENST00000647974.1;ENST00000373559.8	3.902	2.489	2.104	0.9(8627)	0.942(661)	0.843(14659)	non tumor-specific	exon_skip	yes
SNX5_LS019	chr20:17951595|17953996:-	SNX5	sorting nexin 5	protein coding gene	no	ENST00000476648.5	0.097	0.036	0.674	0.16(1530)	0.174(122)	0.154(2683)	non tumor-specific	exon_skip	yes
UN_WDR86_LS0056	chr7:151400241|151408768:-	WDR86	WD repeat domain 86	protein coding gene	no	.	8.974	3.077	0.000	0.008(73)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CPAMD8_LS039	chr19:16975258|16976002:-	CPAMD8	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein coding gene	no	ENST00000443236.5;ENST00000593420.5	6.576	7.181	2.393	0.264(2531)	0.654(459)	0.641(11135)	non tumor-specific	exon_skip	yes
UN_BTF3L4_LS0005	chr1:52056644|52059835:+	BTF3L4	basic transcription factor 3 like 4	protein coding gene	no	.	1.493	0.085	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_CARD8_LS0011	chr19:48195598|48195700:+	CARD8	caspase recruitment domain family member 8	protein coding gene	no	.	1.363	0.451	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TPTEP2-CSNK1E_LS0075	chr22:38367787|38380370:-	TPTEP2-CSNK1E	TPTEP2-CSNK1E readthrough	protein coding gene	no	.	2.501	0.653	0.000	0.042(406)	0.033(23)	0(0)	non tumor-specific	exon_skip	no
PM20D1_LS007	chr1:205840323|205841811:-	PM20D1	peptidase M20 domain containing 1	protein coding gene	no	ENST00000367136.4;ENST00000460624.5;ENST00000461807.1	3.008	7.398	1.298	0.107(1029)	0.265(186)	0.43(7467)	non tumor-specific	exon_skip	yes
AC055855.2_LS001	chr15:66279043|66293326:-	AC055855.2	-	lncRNA gene	no	ENST00000564269.1	0.176	0.053	0.657	0.043(415)	0.05(35)	0.028(495)	non tumor-specific	nAS	yes
UN_RABEPK_LS0010	chr9:125205652|125207564:+	RABEPK	Rab9 effector protein with kelch motifs	protein coding gene	no	.	2.532	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RAB1B_LS0090	chr11:66276443|66276873:-	RAB1B	RAB1B, member RAS oncogene family	protein coding gene	no	.	8.580	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CRELD1_LS019	chr3:9943253|9943482:+	CRELD1	cysteine rich with EGF like domains 1	protein coding gene	no	ENST00000489674.5	0.266	0.186	1.812	0.612(5861)	0.605(425)	0.795(13816)	non tumor-specific	alt_3prime;intron_retention	yes
UN_PARPBP_LS0027	chr12:102154996|102164438:+	PARPBP	PARP1 binding protein	protein coding gene	no	.	2.085	0.066	0.000	0.012(113)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RPLP0P6_LS0043	chr2:38482088|38482255:-	RPLP0P6	ribosomal protein lateral stalk subunit P0 pseudogene 6	pseudogene	no	.	7.163	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9orf84_LS0026	chr9:111786035|111794900:-	C9orf84	shortage in chiasmata 1	protein coding gene	no	.	1.466	0.034	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TPM3_LS005	chr1:154159048|154170400:-	TPM3	tropomyosin 3	protein coding gene	no	ENST00000368531.6;ENST00000323144.11	0.580	6.374	2.415	0.851(8157)	0.879(617)	0.837(14545)	non tumor-specific	exon_skip	yes
UN_CCDC91_LS0079	chr12:28255662|28256002:+	CCDC91	coiled-coil domain containing 91	protein coding gene	no	.	2.021	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAH5_LS050	chr5:13841130|13841692:-	DNAH5	dynein axonemal heavy chain 5	protein coding gene	no	ENST00000265104.4	3.864	2.201	0.935	0.116(1113)	0.234(164)	0.167(2904)	non tumor-specific	nAS	yes
AC061992.1_LS003	chr17:78362751|78367193:+	AC061992.1	-	lncRNA gene	no	ENST00000592569.1	0.953	0.032	0.785	0.04(384)	0.003(2)	0.1(1737)	non tumor-specific	nAS	yes
BDNF_LS017	chr11:27674342|27700971:-	BDNF	brain derived neurotrophic factor	protein coding gene	no	ENST00000530786.5;ENST00000438929.5;ENST00000420794.2	0.022	0.000	0.553	0.001(11)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_POLDIP2_LS0078	chr17:28353356|28353695:-	POLDIP2	DNA polymerase delta interacting protein 2	protein coding gene	no	.	2.732	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC005697.2_UP_LS0015	chr17:27645881|27749808:+	AC005697.2	-	lncRNA gene	no	.	88.272	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
IPCEF1_LS019	chr6:154306768|154330021:-	IPCEF1	interaction protein for cytohesin exchange factors 1	protein coding gene	no	ENST00000422970.6	0.341	0.000	0.598	0.001(10)	0.001(1)	0.003(57)	non tumor-specific	exon_skip	yes
UN_SNRPCP8_UP_LS0022	chr3:130153583|130182747:+	SNRPCP8	small nuclear ribonucleoprotein polypeptide C pseudogene 8	pseudogene	no	.	3.010	0.290	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
AC122136.1_LS001	chr2:215870145|215870264:+	AC122136.1	-	lncRNA gene	no	ENST00000443971.1	0.157	0.004	0.567	0.002(23)	0.001(1)	0.003(45)	non tumor-specific	nAS	yes
IFI35_LS005	chr17:43012277|43012942:+	IFI35	interferon induced protein 35	protein coding gene	no	ENST00000536969.1	0.084	0.930	0.803	0.457(4380)	0.509(357)	0.332(5775)	non tumor-specific	alt_3prime	yes
RBBP7_LS021	chrX:16858822|16862955:-	RBBP7	RB binding protein 7, chromatin remodeling factor	protein coding gene	yes	ENST00000404022.5;ENST00000404022.5	27.008	32.600	4.721	0.974(9331)	0.986(692)	0.949(16494)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CHFR_LS0117	chr12:132945797|132954113:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	1.487	0.401	0.000	0.015(144)	0.006(4)	0(0)	non tumor-specific	nAS	no
MTERF1_LS002	chr7:91693459|91827415:-	MTERF1	mitochondrial transcription termination factor 1	protein coding gene	no	ENST00000454222.5	0.494	0.075	0.727	0.015(143)	0.017(12)	0.137(2380)	non tumor-specific	exon_skip	yes
UN_AHDC1_LS0095	chr1:27553185|27555849:-	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	1.637	0.076	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SOX13_LS0011	chr1:204114432|204116507:+	SOX13	SRY-box transcription factor 13	protein coding gene	no	.	2.278	0.053	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DNMT3A_UP_LS0002	chr2:25367230|25414409:-	DNMT3A	DNA methyltransferase 3 alpha	protein coding gene	yes	.	1.838	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CDC37L1-DT_LS002	chr9:4679165|4679387:-	CDC37L1-DT	CDC37L1 divergent transcript	lncRNA gene	no	ENST00000607997.1	0.791	0.576	2.000	0.807(7736)	0.852(598)	0.833(14476)	non tumor-specific	nAS	yes
UN_HEPH_LS0020	chrX:66193638|66195104:+	HEPH	hephaestin	protein coding gene	no	.	18.444	15.927	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
NR4A1_LS021	chr12:52051568|52054327:+	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	ENST00000394825.5;ENST00000550763.1;ENST00000548232.1;ENST00000394825.5;ENST00000550763.1;ENST00000548232.1;ENST00000394825.5;ENST00000550763.1;ENST00000548232.1	32.079	108.011	92.460	0.952(9123)	0.987(693)	0.971(16882)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CKAP5_LS028	chr11:46778313|46778460:-	CKAP5	cytoskeleton associated protein 5	protein coding gene	no	ENST00000529230.5;ENST00000312055.9;ENST00000354558.7	49.387	24.601	21.659	0.961(9203)	0.981(689)	0.974(16929)	non tumor-specific	alt_3prime	yes
UN_BX890604.2_LS0141	chrX:3865142|3905348:-	BX890604.2	-	lncRNA gene	no	.	2.745	0.190	0.000	0.014(136)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_C9orf64_LS0003	chr9:83939187|83939321:-	C9orf64	chromosome 9 open reading frame 64	protein coding gene	no	.	4.506	0.250	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
SYTL5_LS014	chrX:38108699|38110321:+	SYTL5	synaptotagmin like 5	protein coding gene	no	ENST00000297875.6;ENST00000456733.2	5.239	3.842	3.148	0.321(3076)	0.556(390)	0.398(6925)	non tumor-specific	nAS	yes
AL583808.1_LS002	chr1:72749276|72850750:-	AL583808.1	-	lncRNA gene	no	ENST00000445976.1	1.871	0.171	0.771	0.113(1085)	0.027(19)	0.034(588)	non tumor-specific	nAS	yes
PTPN2_LS035	chr18:12859254|12884073:-	PTPN2	protein tyrosine phosphatase non-receptor type 2	protein coding gene	yes	ENST00000327283.7;ENST00000591115.5;ENST00000353319.8;ENST00000309660.9;ENST00000645816.1;ENST00000592776.1	17.776	10.157	16.790	0.981(9403)	0.991(696)	0.976(16965)	non tumor-specific	exon_skip	yes
POLR2E_LS027	chr19:1092532|1095259:-	POLR2E	RNA polymerase II, I and III subunit E	protein coding gene	no	.;.;.	1.785	0.320	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AMPD3_LS0022	chr11:10450265|10450288:+	AMPD3	adenosine monophosphate deaminase 3	protein coding gene	no	.	0.874	0.044	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL121894.1_UP_LS0027	chr20:23689001|23689314:-	AL121894.1	-	lncRNA gene	no	.	1.331	0.191	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SEPT6_LS0030	chrX:119675668|119686560:-	SEPT6	septin 6	protein coding gene	no	.	1.699	0.001	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LINC02026_LS0006	chr3:193979796|193980616:-	LINC02026	long intergenic non-protein coding RNA 2026	lncRNA gene	no	.	1.233	0.507	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
CIB4_LS006	chr2:26595317|26629410:-	CIB4	calcium and integrin binding family member 4	protein coding gene	no	ENST00000288861.4	1.906	0.907	0.785	0.045(430)	0.1(70)	0.141(2448)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL390719.1_LS0032	chr1:1064780|1065352:+	AL390719.1	-	pseudogene	no	.	4.214	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PSEN2_LS006	chr1:226875550|226881888:+	PSEN2	presenilin 2	protein coding gene	no	ENST00000524196.5;ENST00000366783.7;ENST00000495488.5;ENST00000422240.6	16.453	11.754	17.120	0.98(9393)	0.994(698)	0.975(16953)	non tumor-specific	exon_skip	yes
UN_EPB41L4A_LS0038	chr5:112234749|112239660:-	EPB41L4A	erythrocyte membrane protein band 4.1 like 4A	protein coding gene	no	.	3.612	0.460	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SATB1-AS1_LS066	chr3:18697975|18745954:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000425799.6	2.557	0.000	0.729	0.046(439)	0(0)	0.001(21)	non tumor-specific	nAS	yes
IQGAP2_LS045	chr5:76693442|76695454:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000274364.10;ENST00000505766.5;ENST00000379730.7;ENST00000396234.7;ENST00000502745.5;ENST00000504477.5;ENST00000512256.1	50.223	59.175	12.655	0.946(9068)	0.981(689)	0.889(15448)	non tumor-specific	nAS	yes
ESPL1_LS006	chr12:53270482|53270678:+	ESPL1	extra spindle pole bodies like 1, separase	protein coding gene	yes	ENST00000257934.8;ENST00000552671.5;ENST00000552462.1	4.807	1.030	1.342	0.551(5283)	0.174(122)	0.341(5935)	non tumor-specific	exon_skip	yes
UN_FGF12_LS0008	chr3:192170656|192170842:-	FGF12	fibroblast growth factor 12	protein coding gene	no	.	2.511	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RB1CC1_LS0045	chr8:52744778|52744927:+	RB1CC1	RB1 inducible coiled-coil 1	protein coding gene	yes	.	2.391	0.108	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	nAS	no
KIF1B_LS039	chr1:10337203|10337371:+	KIF1B	kinesin family member 1B	protein coding gene	yes	ENST00000263934.10;ENST00000377086.5;ENST00000377081.5;ENST00000620295.2;ENST00000622724.3	10.266	9.192	8.034	0.792(7590)	0.915(642)	0.963(16738)	non tumor-specific	exon_skip	yes
ZRANB3_LS018	chr2:135269141|135271768:-	ZRANB3	zinc finger RANBP2-type containing 3	protein coding gene	no	ENST00000401392.5;ENST00000264159.10	2.324	0.957	1.275	0.551(5275)	0.566(397)	0.659(11449)	non tumor-specific	exon_skip	yes
UN_GOLGA7B_LS0002	chr10:97850315|97859473:+	GOLGA7B	golgin A7 family member B	protein coding gene	no	.	2.108	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BCL9L_LS0022	chr11:118896550|118896594:+	BCL9L	BCL9 like	protein coding gene	yes	.	2.192	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VWA3A_LS050	chr16:22152634|22155567:+	VWA3A	von Willebrand factor A domain containing 3A	protein coding gene	no	ENST00000389398.9;ENST00000299840.10;ENST00000563755.1	4.767	1.893	1.791	0.106(1013)	0.117(82)	0.582(10118)	non tumor-specific	exon_skip	yes
RNF103-CHMP3_LS005	chr2:86542312|86620330:-	RNF103-CHMP3	RNF103-CHMP3 readthrough	protein coding gene	no	ENST00000604011.5;ENST00000440757.2	0.398	0.307	1.370	0.904(8659)	0.936(657)	0.587(10199)	non tumor-specific	nAS	yes
DGCR8_LS004	chr22:20087321|20089669:+	DGCR8	DGCR8 microprocessor complex subunit	protein coding gene	no	ENST00000351989.7;ENST00000383024.6;ENST00000495826.5;ENST00000407755.1;ENST00000498171.5	16.009	10.459	19.604	0.973(9321)	0.989(694)	0.974(16930)	non tumor-specific	exon_skip	yes
ADD2_LS012	chr2:70677781|70692547:-	ADD2	adducin 2	protein coding gene	no	ENST00000522886.5	0.280	0.000	0.819	0.047(451)	0(0)	0.013(229)	non tumor-specific	nAS	yes
DMPK_LS031	chr19:45779522|45779778:-	DMPK	DM1 protein kinase	protein coding gene	no	ENST00000291270.8;ENST00000588522.5;ENST00000600757.5;ENST00000343373.8;ENST00000447742.6;ENST00000458663.6;ENST00000618091.4;ENST00000354227.9;ENST00000598180.1;ENST00000596067.1	23.953	33.246	123.157	0.983(9421)	0.989(694)	0.979(17017)	non tumor-specific	nAS	yes
AL162431.1_LS004	chr1:180908771|180908873:+	AL162431.1	-	lncRNA gene	no	ENST00000434447.5;ENST00000422858.1	0.370	0.021	0.669	0.024(227)	0.003(2)	0.041(711)	non tumor-specific	nAS	yes
AC008147.2_LS001	chr12:50190261|50191333:-	AC008147.2	-	lncRNA gene	no	ENST00000552061.1	0.073	0.039	0.602	0.037(353)	0.053(37)	0.005(83)	non tumor-specific	nAS	yes
UN_TMX4_LS0009	chr20:7982616|7983794:-	TMX4	thioredoxin related transmembrane protein 4	protein coding gene	no	.	14.519	1.228	0.000	0.008(80)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
CCDC158_LS001	chr4:76313246|76323302:-	CCDC158	coiled-coil domain containing 158	protein coding gene	no	ENST00000504667.2;ENST00000388914.7	2.813	0.134	0.719	0.001(13)	0.003(2)	0.104(1808)	non tumor-specific	nAS	yes
UN_TAF11_LS0009	chr6:34883610|34887787:-	TAF11	TATA-box binding protein associated factor 11	protein coding gene	no	.	1.923	0.339	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLPPR1_LS007	chr9:101286236|101309211:+	PLPPR1	phospholipid phosphatase related 1	protein coding gene	no	ENST00000374874.7;ENST00000395056.2;ENST00000463206.1	9.178	8.508	4.328	0.325(3115)	0.581(408)	0.315(5467)	non tumor-specific	exon_skip	yes
UN_SERPINA3_LS0036	chr14:94617930|94619311:-	SERPINA3	serpin family A member 3	protein coding gene	no	.	1.949	0.626	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_BGN_LS0236	chrX:153508974|153509433:-	BGN	biglycan	protein coding gene	no	.	3.582	0.104	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
GSTA2_LS005	chr6:52756309|52757861:-	GSTA2	glutathione S-transferase alpha 2	protein coding gene	no	ENST00000493422.2	34.175	144.566	2.565	0.362(3471)	0.652(458)	0.174(3017)	non tumor-specific	nAS	yes
AC096564.1_LS001	chr4:107867645|107873330:-	AC096564.1	-	lncRNA gene	no	ENST00000499098.1	1.036	0.000	0.691	0(1)	0(0)	0.034(595)	non tumor-specific	nAS	yes
UN_YIPF2_LS0017	chr19:10927970|10928564:+	YIPF2	Yip1 domain family member 2	protein coding gene	no	.	0.250	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC108751.4_UP_LS0001	chr3:149387826|149390330:-	AC108751.4	-	lncRNA gene	no	.	4.729	1.132	0.000	0.092(880)	0.075(53)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS0259	chr11:62520060|62525173:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.384	0.710	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
DGLUCY_LS016	chr14:91114528|91157639:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000521081.5;ENST00000518649.5;ENST00000428926.6	0.658	0.453	3.428	0.823(7885)	0.883(620)	0.899(15619)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DHX8_LS0025	chr17:43524137|43524650:-	DHX8	DEAH-box helicase 8	protein coding gene	no	.	0.786	0.287	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC112695.1_LS002	chr4:92300885|92304053:-	AC112695.1	-	lncRNA gene	no	ENST00000504213.1	0.537	0.000	0.942	0.008(73)	0(0)	0.003(55)	non tumor-specific	nAS	yes
UN_MRPL2_LS0015	chr6:43059522|43059783:-	MRPL2	mitochondrial ribosomal protein L2	protein coding gene	no	.	0.431	0.206	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TBC1D1_LS0017	chr4:38001288|38014509:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	.	1.804	0.375	0.000	0.008(73)	0.011(8)	0(0)	non tumor-specific	nAS	no
USP24_LS010	chr1:55078651|55079538:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000294383.6	29.725	20.412	25.734	0.93(8910)	0.966(678)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_TOLLIP_UP_LS0001	chr11:1336240|1336505:-	TOLLIP	toll interacting protein	protein coding gene	no	.	3.161	0.102	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TBX1_LS0022	chr22:19765113|19765701:+	TBX1	T-box transcription factor 1	protein coding gene	no	.	4.002	2.985	0.000	0.002(17)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
PKHD1L1_LS073	chr8:109508264|109510777:+	PKHD1L1	PKHD1 like 1	protein coding gene	no	ENST00000378402.9;ENST00000526472.1	9.943	10.329	3.839	0.099(944)	0.37(260)	0.665(11556)	non tumor-specific	nAS	yes
UN_NTHL1_LS0012	chr16:2046391|2047709:-	NTHL1	nth like DNA glycosylase 1	protein coding gene	no	.	2.305	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FLII_LS0030	chr17:18247085|18247169:-	FLII	FLII actin remodeling protein	protein coding gene	no	.	17.110	6.030	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
STRIP2_LS003	chr7:129444098|129451613:+	STRIP2	striatin interacting protein 2	protein coding gene	no	ENST00000249344.6;ENST00000435494.2	4.324	2.716	2.125	0.448(4296)	0.231(162)	0.674(11713)	non tumor-specific	alt_3prime;exon_skip	yes
C3orf35_LS012	chr3:37417492|37417667:+	C3orf35	chromosome 3 open reading frame 35	lncRNA gene	no	ENST00000332506.7	1.981	0.000	0.708	0.002(18)	0(0)	0.161(2802)	non tumor-specific	intron_retention	yes
PSMA2_LS002	chr7:42917835|42921858:-	PSMA2	proteasome 20S subunit alpha 2	protein coding gene	no	ENST00000223321.8;ENST00000436986.5;ENST00000457444.5;ENST00000445517.1	570.100	264.035	220.704	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_LRAT_LS0003	chr4:154636396|154646694:+	LRAT	lecithin retinol acyltransferase	protein coding gene	no	.	1.285	0.142	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_AC009133.6_LS0003	chr16:29814853|29814919:-	AC009133.6	-	protein coding gene	no	.	5.214	3.369	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
PRKAB1_LS004	chr12:119669926|119672301:+	PRKAB1	protein kinase AMP-activated non-catalytic subunit beta 1	protein coding gene	no	ENST00000540121.5	0.030	0.030	0.631	0.638(6108)	0.712(500)	0.004(74)	non tumor-specific	nAS	yes
UN_FAM83D_LS0001	chr20:38926541|38926608:-	FAM83D	family with sequence similarity 83 member D	protein coding gene	yes	.	3.848	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SERINC5_LS018	chr5:80150948|80158836:-	SERINC5	serine incorporator 5	protein coding gene	no	ENST00000509193.5;ENST00000632581.1;ENST00000512972.6;ENST00000507668.6	33.397	25.320	6.679	0.95(9105)	0.981(689)	0.953(16567)	non tumor-specific	nAS	yes
UN_PHGDH_LS0008	chr1:119712154|119712785:-	PHGDH	phosphoglycerate dehydrogenase	protein coding gene	no	.	1.178	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RRN3_LS007	chr16:15071251|15072950:-	RRN3	RRN3 homolog, RNA polymerase I transcription factor	protein coding gene	no	ENST00000198767.10;ENST00000563559.5;ENST00000429751.6;ENST00000327307.11	32.647	20.189	17.625	0.971(9302)	0.989(694)	0.973(16917)	non tumor-specific	exon_skip	yes
ROCK1_LS009	chr18:20967076|20967752:-	ROCK1	Rho associated coiled-coil containing protein kinase 1	protein coding gene	yes	ENST00000399799.2;ENST00000635540.1	45.465	31.412	44.011	0.965(9246)	0.989(694)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_UBL4A_LS0027	chrX:154484484|154484631:+	UBL4A	ubiquitin like 4A	protein coding gene	no	.	1.653	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LRP1B_LS032	chr2:140450661|140456455:-	LRP1B	LDL receptor related protein 1B	protein coding gene	yes	ENST00000389484.7	4.790	1.753	1.894	0.088(847)	0.142(100)	0.322(5605)	non tumor-specific	nAS	yes
WRN_LS029	chr8:31142701|31143550:+	WRN	WRN RecQ like helicase	protein coding gene	no	ENST00000298139.5;ENST00000521620.5	10.703	5.884	7.374	0.913(8743)	0.969(680)	0.952(16550)	non tumor-specific	nAS	yes
UN_PRTFDC1_LS0011	chr10:24937367|24938540:-	PRTFDC1	phosphoribosyl transferase domain containing 1	protein coding gene	no	.	3.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PAN2_LS035	chr12:56326409|56326617:-	PAN2	retinol dehydrogenase 14	protein coding gene	no	ENST00000425394.6;ENST00000610546.4;ENST00000551359.5;ENST00000440411.7;ENST00000257931.9;ENST00000548043.5;ENST00000547994.5	13.677	8.298	33.077	0.937(8976)	0.977(686)	0.977(16988)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02568_LS0003	chr15:63394911|63395605:+	LINC02568	long intergenic non-protein coding RNA 2568	lncRNA gene	no	.	1.456	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRMT112_LS0002	chr11:64316893|64317070:+	TRMT112	tRNA methyltransferase subunit 11-2	protein coding gene	no	.	13.446	0.066	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCN3A_LS005	chr2:165095648|165096467:-	SCN3A	sodium voltage-gated channel alpha subunit 3	protein coding gene	no	ENST00000360093.7;ENST00000640652.1;ENST00000283254.11;ENST00000638473.1;ENST00000409101.7;ENST00000471697.1	3.471	0.968	1.748	0.163(1564)	0.346(243)	0.588(10224)	non tumor-specific	nAS	yes
IRF7_LS012	chr11:614037|614174:-	IRF7	interferon regulatory factor 7	protein coding gene	no	ENST00000528413.6;ENST00000397574.7;ENST00000397566.5;ENST00000525445.6;ENST00000330243.9	28.451	10.292	7.561	0.981(9403)	0.987(693)	0.957(16643)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CNOT1_LS018	chr16:58534395|58536968:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	ENST00000568917.1	38.052	22.808	7.246	0.95(9103)	0.946(664)	0.944(16409)	non tumor-specific	alt_5prime	yes
UN_IRF2BP2_UP_LS0012	chr1:234689130|234712960:-	IRF2BP2	interferon regulatory factor 2 binding protein 2	protein coding gene	no	.	1.639	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP32_LS0051	chr11:129164427|129267237:-	ARHGAP32	Rho GTPase activating protein 32	protein coding gene	no	.	2.668	0.205	0.000	0.004(35)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_MGMT_LS0029	chr10:129646834|129707895:+	MGMT	O-6-methylguanine-DNA methyltransferase	protein coding gene	no	.	3.334	0.928	0.000	0.035(332)	0.04(28)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TRIM16L_LS004	chr17:18699457|18701357:+	TRIM16L	tripartite motif containing 16 like	protein coding gene	no	ENST00000572555.5;ENST00000449697.7;ENST00000571708.5	2.361	1.697	3.382	0.808(7745)	0.922(647)	0.915(15896)	non tumor-specific	alt_3prime;exon_skip	yes
SATB1-AS1_LS028	chr3:18527326|18528076:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000627157.2;ENST00000629177.2	0.144	0.000	0.802	0.01(93)	0.001(1)	0.007(120)	non tumor-specific	nAS	yes
UN_DYNC1H1_LS0059	chr14:102048031|102048516:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	.	25.845	13.860	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_AC078882.1_UP_LS0024	chr2:142869594|142870512:-	AC078882.1	-	lncRNA gene	no	.	6.313	0.759	0.000	0.009(87)	0.007(5)	0(0)	non tumor-specific	nAS	no
BBX_LS029	chr3:107684709|107744630:+	BBX	BBX high mobility group box domain containing	protein coding gene	no	ENST00000472032.1	0.640	0.000	0.635	0.003(31)	0.001(1)	0(8)	non tumor-specific	nAS	yes
UN_MUC1_LS0061	chr1:155188237|155188311:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	1.279	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ATF7_LS018	chr12:53601021|53625951:-	ATF7	activating transcription factor 7	protein coding gene	no	ENST00000456903.8;ENST00000551480.2;ENST00000588078.5;ENST00000548118.6	2.302	1.448	4.527	0.942(9029)	0.956(671)	0.95(16506)	non tumor-specific	nAS	yes
UN_TMOD3_LS0065	chr15:51938285|51947292:-	TMOD3	tropomodulin 3	protein coding gene	no	.	12.856	0.862	0.000	0.014(131)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAMPT_LS010	chr7:106269312|106272530:-	NAMPT	nicotinamide phosphoribosyltransferase	protein coding gene	no	ENST00000222553.7;ENST00000354289.8;ENST00000491027.5;ENST00000484527.5	109.874	83.322	72.157	0.987(9452)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRYBG2_LS0074	chr1:26356522|26358871:-	CRYBG2	crystallin beta-gamma domain containing 2	protein coding gene	no	.	0.763	0.226	0.000	0.012(114)	0.023(16)	0(0)	non tumor-specific	nAS	no
TBC1D32_LS019	chr6:121161056|121223236:-	TBC1D32	TBC1 domain family member 32	protein coding gene	no	ENST00000398197.6	0.439	0.054	0.659	0.026(252)	0.02(14)	0.068(1181)	non tumor-specific	exon_skip	yes
UN_AL365259.1_LS0014	chr6:125657466|125705045:-	AL365259.1	-	lncRNA gene	no	.	3.108	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
FAM57A_LS008	chr17:738047|741301:+	FAM57A	TLC domain containing 3A	protein coding gene	no	ENST00000301324.8	0.611	0.508	1.066	0.804(7706)	0.736(517)	0.356(6187)	non tumor-specific	exon_skip	yes
UN_KRT18P13_UP_LS0002	chr9:97672781|97682377:+	KRT18P13	keratin 18 pseudogene 13	pseudogene	no	.	0.794	0.003	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPL4_LS0010	chr15:66499438|66499508:+	RPL4	ribosomal protein L4	protein coding gene	no	.	54.921	8.216	0.000	0.06(574)	0.023(16)	0(0)	non tumor-specific	nAS	no
DOCK6_LS030	chr19:11223106|11227337:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	ENST00000294618.11;ENST00000587656.5;ENST00000294618.11;ENST00000587656.5	21.243	13.676	22.458	0.938(8986)	0.979(687)	0.954(16581)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAGI3_LS0039	chr1:113610754|113614601:+	MAGI3	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein coding gene	no	.	0.607	0.382	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
STAB2_LS021	chr12:103669627|103670696:+	STAB2	stabilin 2	protein coding gene	no	ENST00000388887.6	2.461	1.889	0.994	0.006(55)	0.101(71)	0.158(2753)	non tumor-specific	nAS	yes
SPAG1_LS020	chr8:100239404|100240403:+	SPAG1	sperm associated antigen 1	protein coding gene	no	ENST00000251809.4;ENST00000388798.6;ENST00000519424.1	13.901	8.507	5.991	0.96(9201)	0.979(687)	0.944(16406)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AC106782.1_LS0006	chr16:30206202|30206349:-	AC106782.1	-	pseudogene	no	.	1.781	2.384	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
UN_C6orf203_UP_LS0041	chr6:106970584|107005024:+	C6orf203	mitochondrial transcription rescue factor 1	protein coding gene	no	.	41.773	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EGLN3_LS0046	chr14:33973779|33987012:-	EGLN3	egl-9 family hypoxia inducible factor 3	protein coding gene	yes	.	3.075	0.123	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NXPE1_LS018	chr11:114552880|114559798:-	NXPE1	neurexophilin and PC-esterase domain family member 1	protein coding gene	no	ENST00000534921.2;ENST00000251921.6	1.842	7.184	3.527	0.047(455)	0.075(53)	0.054(934)	non tumor-specific	exon_skip	yes
MAPK9_LS006	chr5:180241155|180248973:-	MAPK9	mitogen-activated protein kinase 9	protein coding gene	yes	ENST00000347470.8	0.050	0.018	0.679	0.068(650)	0.057(40)	0.029(497)	non tumor-specific	nAS	yes
TTK_LS006	chr6:80005982|80007809:+	TTK	TTK protein kinase	protein coding gene	no	ENST00000509894.5;ENST00000230510.7;ENST00000369798.6;ENST00000502580.5;ENST00000511260.5;ENST00000504040.1;ENST00000430061.2	4.303	0.883	1.220	0.737(7062)	0.38(267)	0.292(5068)	non tumor-specific	exon_skip	yes
UN_PUF60_LS0082	chr8:143827699|143828984:-	PUF60	poly(U) binding splicing factor 60	protein coding gene	no	.	0.959	0.288	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
RSF1_LS009	chr11:77693611|77698487:-	RSF1	remodeling and spacing factor 1	protein coding gene	yes	ENST00000308488.10;ENST00000480887.5;ENST00000531026.5;ENST00000526324.5;ENST00000531768.1;ENST00000532556.1	26.374	18.116	14.475	0.971(9307)	0.99(695)	0.977(16984)	non tumor-specific	exon_skip	yes
CWF19L1_LS016	chr10:100253539|100260966:-	CWF19L1	CWF19 like cell cycle control factor 1	protein coding gene	no	ENST00000482452.5	2.273	0.116	0.650	0.001(12)	0.001(1)	0.116(2016)	non tumor-specific	exon_skip	yes
UN_GCC2_LS0021	chr2:108485908|108486499:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	.	3.997	0.980	0.000	0.036(348)	0.036(25)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
TMEM82_LS004	chr1:15743194|15744160:+	TMEM82	transmembrane protein 82	protein coding gene	no	ENST00000375782.1;ENST00000465575.1	6.848	20.362	12.032	0.181(1735)	0.33(232)	0.063(1094)	non tumor-specific	exon_skip	yes
KIF20B_LS033	chr10:89768391|89768738:+	KIF20B	kinesin family member 20B	protein coding gene	no	ENST00000260753.8;ENST00000371728.7;ENST00000478929.1	17.218	4.147	4.240	0.942(9027)	0.915(642)	0.916(15915)	non tumor-specific	nAS	yes
ABHD12B_LS023	chr14:50903467|50904006:+	ABHD12B	abhydrolase domain containing 12B	protein coding gene	no	ENST00000553715.1	0.285	0.070	0.713	0.018(170)	0.009(6)	0.083(1448)	non tumor-specific	alt_3prime;intron_retention	yes
UN_HNRNPH1_LS0023	chr5:179619483|179620892:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	.	12.077	1.774	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_GRIN2D_UP_LS0009	chr19:48393868|48394658:+	GRIN2D	glutamate ionotropic receptor NMDA type subunit 2D	protein coding gene	no	.	0.834	0.129	0.000	0.04(383)	0.003(2)	0(0)	non tumor-specific	nAS	no
RANBP17_LS002	chr5:170863685|170878097:+	RANBP17	RAN binding protein 17	protein coding gene	no	ENST00000519944.1	0.058	0.000	0.561	0.015(146)	0.01(7)	0(6)	non tumor-specific	nAS	yes
ALYREF_LS011	chr17:81890820|81891323:-	ALYREF	Aly/REF export factor	protein coding gene	no	ENST00000505490.2;ENST00000512673.1	23.666	12.636	34.350	0.961(9209)	0.966(678)	0.979(17020)	non tumor-specific	nAS	yes
GMFB_LS002	chr14:54479859|54480874:-	GMFB	glia maturation factor beta	protein coding gene	no	ENST00000358056.7;ENST00000616146.4;ENST00000628554.2;ENST00000554163.5;ENST00000554247.5;ENST00000553333.1	35.517	27.213	23.570	0.992(9500)	0.996(699)	0.977(16990)	non tumor-specific	exon_skip;intron_retention	yes
AC021752.1_LS008	chr15:50891077|50908552:-	AC021752.1	-	lncRNA gene	no	ENST00000613161.4	1.716	0.448	0.821	0.008(76)	0.007(5)	0.344(5984)	non tumor-specific	nAS	yes
UN_SDHAP1_LS0027	chr3:195965542|195967077:-	SDHAP1	succinate dehydrogenase complex flavoprotein subunit A pseudogene 1	pseudogene	no	.	2.133	0.036	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
ABI3BP_LS038	chr3:100818581|100820220:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000471714.5;ENST00000495591.5;ENST00000495063.5	1.883	3.732	12.113	0.169(1620)	0.61(428)	0.836(14532)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
HRK_LS008	chr12:116869655|116876691:-	HRK	harakiri, BCL2 interacting protein	protein coding gene	no	ENST00000586941.1	0.066	0.000	0.627	0.004(34)	0(0)	0(2)	non tumor-specific	nAS	yes
LINC00933_LS007	chr15:84573251|84577948:+	LINC00933	long intergenic non-protein coding RNA 933	pseudogene	no	ENST00000557887.1	0.591	0.368	1.294	0.198(1900)	0.352(247)	0.568(9876)	non tumor-specific	nAS	yes
LINC01701_LS002	chr1:189777337|189791579:+	LINC01701	long intergenic non-protein coding RNA 1701	lncRNA gene	no	ENST00000419614.1	0.827	0.016	0.687	0.008(77)	0.001(1)	0.016(277)	non tumor-specific	nAS	yes
ZNF418_LS019	chr19:57932646|57933817:-	ZNF418	zinc finger protein 418	protein coding gene	no	ENST00000425570.7;ENST00000595569.1	0.078	0.028	0.815	0.128(1228)	0.14(98)	0.357(6202)	non tumor-specific	exon_skip	yes
TARBP1_LS042	chr1:234472811|234478173:-	TARBP1	TAR (HIV-1) RNA binding protein 1	protein coding gene	no	ENST00000040877.1	1.857	0.854	3.585	0.766(7343)	0.815(572)	0.877(15243)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RCOR3_LS0017	chr1:211271309|211271497:+	RCOR3	REST corepressor 3	protein coding gene	no	.	0.904	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_C11orf53_UP_LS0017	chr11:111020664|111024375:+	C11orf53	chromosome 11 open reading frame 53	protein coding gene	no	.	2.890	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AL442663.3_LS001	chr14:73058784|73059276:-	AL442663.3	-	lncRNA gene	no	ENST00000554737.2	0.254	0.288	0.776	0.071(681)	0.14(98)	0.07(1210)	non tumor-specific	nAS	yes
UN_GNL3_LS0004	chr3:52684914|52685436:-	GNL3	G protein nucleolar 3	protein coding gene	no	.	2.982	1.134	0.000	0.122(1166)	0.11(77)	0(0)	non tumor-specific	exon_skip	no
NMNAT3_LS002	chr3:139561392|139573598:-	NMNAT3	nicotinamide nucleotide adenylyltransferase 3	protein coding gene	no	ENST00000506254.5;ENST00000339837.9;ENST00000643695.1;ENST00000646611.1;ENST00000296202.11;ENST00000507242.5	10.107	8.149	6.565	0.831(7958)	0.952(668)	0.929(16140)	non tumor-specific	exon_skip	yes
UN_AHNAK_LS0832	chr11:62523013|62525360:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	3.305	0.514	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC016687.3_UP_LS0013	chr4:34101934|34121083:-	AC016687.3	-	lncRNA gene	no	.	1.885	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCNH1_LS0018	chr1:211133601|211133707:-	KCNH1	potassium voltage-gated channel subfamily H member 1	protein coding gene	no	.	3.251	0.000	0.000	0.006(57)	0(0)	0(0)	non tumor-specific	nAS	no
UGP2_LS001	chr2:63841232|63842059:+	UGP2	UDP-glucose pyrophosphorylase 2	protein coding gene	no	ENST00000484142.1	0.018	0.041	0.805	0.289(2766)	0.359(252)	0.342(5936)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
POU2F3_LS005	chr11:120269244|120298265:+	POU2F3	POU class 2 homeobox 3	protein coding gene	yes	ENST00000260264.8;ENST00000543440.6;ENST00000533620.5	2.492	1.278	1.488	0.215(2057)	0.447(314)	0.323(5619)	non tumor-specific	exon_skip	yes
ADGRG6_LS034	chr6:142438364|142443341:+	ADGRG6	adhesion G protein-coupled receptor G6	protein coding gene	no	.;.	4.626	1.422	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RF00019_UP_LS1841	chr7:75327763|75348697:-	RF00019	-	small non-coding RNA gene	no	.	1.754	0.120	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAST4_LS0083	chr5:67165324|67165402:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	.	4.315	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ESYT2_LS0037	chr7:158757433|158759486:-	ESYT2	extended synaptotagmin 2	protein coding gene	no	.	6.788	6.815	0.000	0.002(19)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
OSBPL10_LS017	chr3:31748120|31876433:-	OSBPL10	oxysterol binding protein like 10	protein coding gene	no	ENST00000438237.6;ENST00000480671.5	0.972	0.629	1.076	0.655(6278)	0.751(527)	0.501(8717)	non tumor-specific	exon_skip	yes
UN_BDH1_LS0023	chr3:197512069|197514347:+	BDH1	3-hydroxybutyrate dehydrogenase 1	protein coding gene	no	.	0.962	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
STAB2_LS040	chr12:103706987|103708441:+	STAB2	stabilin 2	protein coding gene	no	ENST00000388887.6	2.238	2.313	0.947	0.011(103)	0.152(107)	0.15(2604)	non tumor-specific	nAS	yes
UN_ATG4A_UP_LS0005	chrX:108018978|108058038:+	ATG4A	autophagy related 4A cysteine peptidase	protein coding gene	no	.	2.810	0.309	0.000	0.022(210)	0.003(2)	0(0)	non tumor-specific	nAS	no
CAPN9_LS008	chr1:230772099|230774554:+	CAPN9	calpain 9	protein coding gene	no	ENST00000271971.6;ENST00000366666.6	5.232	7.021	1.371	0.249(2389)	0.379(266)	0.291(5060)	non tumor-specific	exon_skip;mutex_exons	yes
CDS2_LS009	chr20:5176745|5178817:+	CDS2	CDP-diacylglycerol synthase 2	protein coding gene	no	ENST00000460006.5;ENST00000467923.5;ENST00000450570.1;ENST00000468817.5;ENST00000379070.3	49.156	29.665	33.885	0.989(9471)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PCBD2_LS0120	chr5:134927270|134927828:+	PCBD2	pterin-4 alpha-carbinolamine dehydratase 2	protein coding gene	no	.	1.126	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DLK2_LS0003	chr6:43451994|43453976:+	DLK2	delta like non-canonical Notch ligand 2	protein coding gene	no	.	2.096	0.570	0.000	0.083(796)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_ZNF7_UP_LS0008	chr8:144811412|144811762:+	ZNF7	zinc finger protein 7	protein coding gene	no	.	1.461	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
AC109446.3_LS001	chr16:17134550|17137516:+	AC109446.3	-	lncRNA gene	no	ENST00000567344.1	0.770	0.377	0.723	0.07(671)	0.06(42)	0.113(1972)	non tumor-specific	nAS	yes
DNAH1_LS081	chr3:52397877|52398032:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	ENST00000486752.5;ENST00000420323.6;ENST00000488988.5	6.291	3.226	14.228	0.57(5460)	0.548(385)	0.977(16977)	non tumor-specific	exon_skip	yes
UN_PSMD3_LS0083	chr17:39997747|39997799:-	PSMD3	proteasome 26S subunit, non-ATPase 3	protein coding gene	no	.	12.983	1.621	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HNRNPK_LS0073	chr9:83978298|83978373:-	HNRNPK	heterogeneous nuclear ribonucleoprotein K	protein coding gene	no	.	38.668	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CEP85_LS003	chr1:26239838|26255171:+	CEP85	centrosomal protein 85	protein coding gene	no	ENST00000640292.2	0.110	0.028	0.642	0.051(485)	0.04(28)	0.027(471)	non tumor-specific	exon_skip	yes
UN_DDX60L_LS0044	chr4:168441492|168453124:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	.	2.803	0.043	0.000	0.012(113)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CPZ_LS004	chr4:8592921|8601123:+	CPZ	carboxypeptidase Z	protein coding gene	no	ENST00000315782.6	0.746	0.593	1.508	0.565(5410)	0.655(460)	0.417(7243)	non tumor-specific	nAS	yes
ANKS1B_LS046	chr12:99504641|99655067:-	ANKS1B	ankyrin repeat and sterile alpha motif domain containing 1B	protein coding gene	no	ENST00000547776.6;ENST00000547010.5;ENST00000549866.5;ENST00000552232.1	0.989	1.253	1.860	0.145(1392)	0.291(204)	0.597(10373)	non tumor-specific	nAS	yes
UN_MIR548AE1_UP_LS0013	chr2:184226181|184303363:+	MIR548AE1	microRNA 548ae-1	small non-coding RNA gene	no	.	3.900	0.448	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP005329.1_UP_LS0004	chr18:3319634|3330626:-	AP005329.1	-	lncRNA gene	no	.	1.989	0.243	0.000	0.024(229)	0.001(1)	0(0)	non tumor-specific	nAS	no
RABL2B_LS030	chr22:50782351|50783039:-	RABL2B	RAB, member of RAS oncogene family like 2B	protein coding gene	no	ENST00000395595.7	0.301	1.212	6.971	0.827(7928)	0.887(623)	0.963(16745)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RCN3_LS005	chr19:49534301|49537033:+	RCN3	reticulocalbin 3	protein coding gene	no	ENST00000597801.1	0.558	0.382	8.020	0.602(5768)	0.48(337)	0.938(16311)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATP1B1_LS0003	chr1:169106378|169106401:-	ATP1B1	ATPase Na+/K+ transporting subunit beta 1	protein coding gene	no	.	2.009	0.272	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
GPAT4_LS023	chr8:41612273|41612845:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	ENST00000396987.7;ENST00000519921.5	92.388	47.781	63.032	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
DAB2IP_LS015	chr9:121751982|121752898:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	ENST00000487716.1	0.173	0.017	0.649	0.002(15)	0.006(4)	0.056(965)	non tumor-specific	exon_skip	yes
UN_ERC1_LS0058	chr12:1482211|1490093:+	ERC1	ELKS/RAB6-interacting/CAST family member 1	protein coding gene	no	.	1.038	0.295	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
CUL3_LS015	chr2:224511582|224513524:-	CUL3	cullin 3	protein coding gene	no	ENST00000264414.8;ENST00000344951.8;ENST00000409096.5;ENST00000409777.5;ENST00000541548.5	54.470	44.754	34.818	0.973(9321)	0.993(697)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC097534.2_LS0006	chr4:173369610|173369914:-	AC097534.2	-	lncRNA gene	no	.	1.770	0.992	0.000	0.011(106)	0.023(16)	0(0)	non tumor-specific	nAS	no
AC012358.3_LS007	chr2:55314251|55317745:+	AC012358.3	-	lncRNA gene	no	ENST00000628537.2	0.023	0.028	0.623	0.001(6)	0.003(2)	0.001(10)	non tumor-specific	nAS	yes
UN_USP6NL_UP_LS0003	chr10:11636939|11668068:-	USP6NL	USP6 N-terminal like	protein coding gene	no	.	1.057	2.168	0.000	0.006(54)	0.016(11)	0(0)	non tumor-specific	nAS	no
ITGAL_LS012	chr16:30475580|30479091:+	ITGAL	integrin subunit alpha L	protein coding gene	no	ENST00000356798.10;ENST00000565864.5;ENST00000562857.5;ENST00000569725.1	5.742	2.770	2.010	0.645(6177)	0.793(557)	0.64(11121)	non tumor-specific	exon_skip	yes
UN_RPL37A_LS0011	chr2:216499388|216499951:-	RPL37A	ribosomal protein L37a	protein coding gene	no	.	24.249	1.784	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MESD_LS0023	chr15:80982182|80989174:-	MESD	mesoderm development LRP chaperone	protein coding gene	no	.	2.713	0.458	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
BCAS3_LS053	chr17:61245371|61368327:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	.;.	15.505	0.290	0.000	0.032(306)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SEC31A_LS020	chr4:82842341|82844411:-	SEC31A	SEC31 homolog A, COPII coat complex component	protein coding gene	no	.;.;.	48.653	0.229	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MARCKS_LS0021	chr6:113857847|113859686:+	MARCKS	myristoylated alanine rich protein kinase C substrate	protein coding gene	yes	.	25.888	4.006	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SPRR2G_LS0005	chr1:153149983|153150014:+	SPRR2G	small proline rich protein 2G	protein coding gene	no	.	41.438	56.279	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01980_LS001	chr3:27802850|27824650:+	LINC01980	long intergenic non-protein coding RNA 1980	lncRNA gene	no	ENST00000647336.1;ENST00000425195.6	0.088	0.000	0.825	0.002(21)	0(0)	0.003(55)	non tumor-specific	nAS	yes
UN_AC092809.3_UP_LS0002	chr1:224192793|224216891:-	AC092809.3	-	pseudogene	no	.	1.342	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_INPP4B_LS0095	chr4:142474452|142474827:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	.	1.028	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SPINK5_LS018	chr5:148089272|148089494:+	SPINK5	serine peptidase inhibitor Kazal type 5	protein coding gene	no	ENST00000476697.7	0.374	0.221	4.540	0.006(56)	0.007(5)	0.125(2165)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
RABEP2_LS012	chr16:28911179|28914236:-	RABEP2	rabaptin, RAB GTPase binding effector protein 2	protein coding gene	no	ENST00000358201.8;ENST00000544477.5;ENST00000562590.5	42.849	22.194	24.246	0.993(9515)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_AC127455.1_UP_LS0001	chr16:88078099|88087011:-	AC127455.1	-	pseudogene	no	.	0.954	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
DSG2_LS008	chr18:31524888|31530987:+	DSG2	desmoglein 2	protein coding gene	no	ENST00000261590.12	76.980	58.108	4.759	0.808(7738)	0.953(669)	0.657(11416)	non tumor-specific	nAS	yes
UN_AC105285.1_LS0012	chr4:173166299|173167962:-	AC105285.1	-	lncRNA gene	no	.	3.056	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HLA-B_LS0185	chr6:31271262|31271314:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	47.533	8.251	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
USP3_LS013	chr15:63533918|63537025:+	USP3	ubiquitin specific peptidase 3	protein coding gene	no	ENST00000557884.5;ENST00000559192.5	0.100	0.275	2.379	0.686(6575)	0.783(550)	0.858(14908)	non tumor-specific	exon_skip	yes
CTU2_LS004	chr16:88707210|88709938:+	CTU2	cytosolic thiouridylase subunit 2	protein coding gene	no	ENST00000453996.6;ENST00000312060.9;ENST00000567949.5;ENST00000565071.1;ENST00000564921.1;ENST00000453996.6;ENST00000312060.9;ENST00000567949.5;ENST00000565071.1;ENST00000564921.1	9.148	4.153	10.897	0.988(9466)	0.997(700)	0.976(16973)	non tumor-specific	alt_3prime;exon_skip	yes
OTOF_LS042	chr2:26489295|26489678:-	OTOF	otoferlin	protein coding gene	no	ENST00000272371.6;ENST00000403946.7	4.375	0.704	1.804	0.003(30)	0.006(4)	0.103(1782)	non tumor-specific	nAS	yes
UN_RPS9_LS0031	chr19:54206462|54206549:-	RPS9	ribosomal protein S9	protein coding gene	no	.	2.729	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHVIII-22-2_UP_LS0013	chr14:106269124|106463513:-	IGHVIII-22-2	immunoglobulin heavy variable (III)-22-2 (pseudogene)	no	no	.	97.325	59.778	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
PKN3_LS003	chr9:128705879|128706713:+	PKN3	protein kinase N3	protein coding gene	no	ENST00000291906.4	5.349	2.770	7.485	0.86(8244)	0.873(613)	0.946(16449)	non tumor-specific	nAS	yes
UN_AC099560.1_LS0006	chr3:40829011|40862392:+	AC099560.1	-	lncRNA gene	no	.	2.359	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RBM10_LS014	chrX:47179495|47179880:+	RBM10	RNA binding motif protein 10	protein coding gene	no	ENST00000377604.7;ENST00000628161.2;ENST00000345781.10;ENST00000329236.8	63.831	32.514	37.023	0.99(9483)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
MYO1C_LS031	chr17:1482558|1482861:-	MYO1C	myosin IE	protein coding gene	no	ENST00000648446.1;ENST00000438665.6;ENST00000575158.5;ENST00000648651.1;ENST00000359786.10;ENST00000361007.7;ENST00000646049.1;ENST00000570984.7;ENST00000545534.6;ENST00000573853.5;ENST00000570490.5	75.786	73.740	73.018	0.972(9310)	0.991(696)	0.976(16961)	non tumor-specific	nAS	yes
UN_LINC02008_LS0004	chr3:82032112|82042725:+	LINC02008	long intergenic non-protein coding RNA 2008	lncRNA gene	no	.	1.842	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
C1S_LS030	chr12:7067771|7067789:+	C1S	complement C1s	protein coding gene	no	ENST00000617865.4	43.716	0.000	0.930	0(1)	0(0)	0.386(6715)	non tumor-specific	nAS	yes
HBS1L_LS004	chr6:134978787|134979178:-	HBS1L	HBS1 like translational GTPase	protein coding gene	no	ENST00000367837.9;ENST00000527005.5;ENST00000527578.5;ENST00000415177.6;ENST00000367826.6;ENST00000533274.5;ENST00000526100.5	45.305	27.732	41.000	0.993(9518)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime	yes
SETD7_LS017	chr4:139604810|139606360:-	SETD7	SET domain containing 7, histone lysine methyltransferase	protein coding gene	no	ENST00000608958.1	1.471	0.505	0.975	0.079(761)	0.064(45)	0.226(3925)	non tumor-specific	exon_skip	yes
NBPF19_LS077	chr1:149543585|149544300:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000621744.4	0.625	0.488	0.367	0.356(3413)	0.409(287)	0(1)	non tumor-specific	nAS	yes
UN_EFNA1_LS0006	chr1:155128507|155131339:+	EFNA1	ephrin A1	protein coding gene	no	.	8.573	0.760	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EP300_LS0018	chr22:41158500|41160612:+	EP300	E1A binding protein p300	protein coding gene	no	.	2.246	0.656	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	nAS	no
MGAM_LS063	chr7:142085961|142086218:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000475668.6	8.194	8.720	1.371	0.095(910)	0.246(173)	0.396(6879)	non tumor-specific	nAS	yes
UN_KCNJ2_UP_LS0001	chr17:70163799|70164133:+	KCNJ2	potassium inwardly rectifying channel subfamily J member 2	protein coding gene	no	.	2.577	0.211	0.000	0.015(139)	0.009(6)	0(0)	non tumor-specific	nAS	no
CPSF3_LS008	chr2:9433960|9436211:+	CPSF3	cleavage and polyadenylation specific factor 3	protein coding gene	no	ENST00000238112.7;ENST00000460593.1	66.900	27.625	18.873	0.989(9476)	0.996(699)	0.978(17004)	non tumor-specific	exon_skip	yes
UN_ATP1A1_LS0038	chr1:116388772|116388898:-	ATP1A1	ATPase Na+/K+ transporting subunit alpha 1	protein coding gene	no	.	0.648	0.378	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TUBB6_LS0059	chr18:12325575|12325695:-	TUBB6	tubulin beta 6 class V	protein coding gene	no	.	4.822	4.778	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
AWAT2_LS007	chrX:70043996|70044352:-	AWAT2	acyl-CoA wax alcohol acyltransferase 2	protein coding gene	no	ENST00000276101.7	0.258	15.420	1.737	0.003(26)	0.03(21)	0.064(1119)	non tumor-specific	exon_skip	yes
MEGF6_LS046	chr1:3506236|3507795:-	MEGF6	multiple EGF like domains 6	protein coding gene	no	ENST00000294599.8;ENST00000356575.8;ENST00000485002.6;ENST00000294599.8;ENST00000356575.8;ENST00000485002.6;ENST00000294599.8;ENST00000356575.8;ENST00000485002.6	12.962	7.901	13.467	0.656(6284)	0.791(555)	0.942(16377)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC01588_LS0002	chr14:49942595|49943752:-	LINC01588	long intergenic non-protein coding RNA 1588	lncRNA gene	no	.	5.583	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CTSO_UP_LS0015	chr4:156112753|156129951:-	CTSO	cathepsin O	protein coding gene	no	.	3.593	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
PTPN20_LS026	chr10:46965137|46999912:+	PTPN20	protein tyrosine phosphatase non-receptor type 20	protein coding gene	no	ENST00000502705.5	0.597	0.124	0.982	0.041(391)	0.047(33)	0.326(5659)	non tumor-specific	nAS	yes
UN_AC026254.2_LS0012	chr17:27347062|27348286:+	AC026254.2	-	lncRNA gene	no	.	2.459	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
APOBEC3B_LS001	chr22:38982470|38984075:+	APOBEC3B	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein coding gene	no	ENST00000407298.7;ENST00000402182.7;ENST00000335760.9;ENST00000333467.3	13.843	4.525	1.220	0.851(8157)	0.838(588)	0.378(6562)	non tumor-specific	exon_skip	yes
UN_NADSYN1_LS0095	chr11:71521692|71523057:+	NADSYN1	NAD synthetase 1	protein coding gene	no	.	7.230	0.713	0.000	0.021(197)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AP1S2_LS0015	chrX:15852524|15852850:-	AP1S2	adaptor related protein complex 1 subunit sigma 2	protein coding gene	no	.	1.776	0.050	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TFF2_LS005	chr21:42347632|42349881:-	TFF2	trefoil factor 2	protein coding gene	no	ENST00000291526.4;ENST00000463771.5;ENST00000475297.1	64.314	272.909	1.437	0.251(2407)	0.37(260)	0.362(6296)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
TRDMT1_LS025	chr10:17174660|17201571:-	TRDMT1	tRNA aspartic acid methyltransferase 1	protein coding gene	no	ENST00000354631.7;ENST00000377799.7;ENST00000495022.5;ENST00000488990.5;ENST00000525762.5;ENST00000424636.2;ENST00000479046.1	2.244	1.603	2.023	0.688(6587)	0.798(560)	0.837(14552)	non tumor-specific	nAS	yes
UN_CDK9_UP_LS0002	chr9:127776676|127784759:+	CDK9	cyclin dependent kinase 9	protein coding gene	no	.	3.062	0.386	0.000	0.012(114)	0.003(2)	0(0)	non tumor-specific	nAS	no
LHX4_LS006	chr1:180272006|180274185:+	LHX4	LIM homeobox 4	protein coding gene	yes	ENST00000263726.3	4.481	0.602	0.890	0.024(228)	0.047(33)	0.102(1776)	non tumor-specific	intron_retention	yes
MGAM_LS053	chr7:142074173|142076203:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000475668.6	6.500	4.633	1.257	0.086(827)	0.228(160)	0.271(4709)	non tumor-specific	nAS	yes
SLC9A3_LS013	chr5:481635|482068:-	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	ENST00000644203.1;ENST00000264938.7;ENST00000514375.1;ENST00000507407.1	9.066	64.196	1.843	0.25(2398)	0.355(249)	0.362(6292)	non tumor-specific	nAS	yes
SOS2_LS001	chr14:50118853|50120275:-	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000216373.9;ENST00000543680.5	27.302	20.814	29.199	0.968(9270)	0.977(686)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SNCAIP_LS0081	chr5:122451601|122456482:+	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	.	1.319	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RBM39_LS0015	chr20:35720602|35721740:-	RBM39	RNA binding motif protein 39	protein coding gene	no	.	0.575	0.249	0.000	0.006(62)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
CHCHD6_LS021	chr3:126914750|126957425:+	CHCHD6	coiled-coil-helix-coiled-coil-helix domain containing 6	protein coding gene	no	ENST00000513253.1;ENST00000513253.1	22.675	14.219	0.826	0.861(8246)	0.885(621)	0.352(6112)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NCKAP5_LS0035	chr2:133213779|133252830:-	NCKAP5	NCK associated protein 5	protein coding gene	no	.	0.986	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPL36_LS0004	chr5:1798947|1801238:-	MRPL36	mitochondrial ribosomal protein L36	protein coding gene	no	.	5.474	1.072	0.000	0.044(425)	0.057(40)	0(0)	non tumor-specific	alt_5prime	no
UN_ZNF720_LS0011	chr16:31714258|31714367:+	ZNF720	zinc finger protein 720	protein coding gene	no	.	2.615	0.076	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
GPS1_LS013	chr17:82051964|82052375:+	GPS1	G protein pathway suppressor 1	protein coding gene	no	ENST00000320548.8;ENST00000584229.1;ENST00000320548.8;ENST00000584229.1	0.306	0.391	2.713	0.373(3577)	0.283(199)	0.92(15989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PLLP_LS0023	chr16:57255085|57255617:-	PLLP	plasmolipin	protein coding gene	no	.	17.241	4.436	0.000	0.01(93)	0.02(14)	0(0)	non tumor-specific	nAS	no
VPS35P1_LS007	chr16:35097510|35101585:+	VPS35P1	VPS35 pseudogene 1	pseudogene	no	ENST00000563400.1	0.375	0.055	0.602	0.001(6)	0.001(1)	0.009(165)	non tumor-specific	nAS	yes
UN_PDXDC1_LS0134	chr16:15114571|15125691:-	PDXDC1	pyridoxal dependent decarboxylase domain containing 1	protein coding gene	no	.	7.684	0.152	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC118549.1_LS0019	chr1:77584655|77641384:-	AC118549.1	-	protein coding gene	no	.	1.620	0.370	0.000	0.007(70)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
CAPN15_LS025	chr16:549201|549288:+	CAPN15	calpain 15	protein coding gene	no	ENST00000219611.6	37.543	17.708	24.373	0.975(9344)	0.976(685)	0.979(17011)	non tumor-specific	alt_5prime	yes
CAND1_LS008	chr12:67297853|67298950:+	CAND1	cullin associated and neddylation dissociated 1	protein coding gene	no	ENST00000545606.5;ENST00000540319.5	36.276	23.794	22.666	0.958(9183)	0.986(692)	0.974(16938)	non tumor-specific	nAS	yes
UN_CRTC1_LS0047	chr19:18781185|18781218:-	CRTC1	CREB regulated transcription coactivator 1	protein coding gene	yes	.	3.056	0.463	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF512B_LS0158	chr20:63965673|63965855:-	ZNF512B	zinc finger protein 512B	protein coding gene	no	.	2.630	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MTO1_LS011	chr6:73479844|73479936:+	MTO1	mitochondrial tRNA translation optimization 1	protein coding gene	no	ENST00000415954.6;ENST00000498286.5;ENST00000442897.6;ENST00000370305.5;ENST00000415228.5;ENST00000370300.8;ENST00000462039.5;ENST00000466977.1	12.197	9.345	22.444	0.982(9406)	0.996(699)	0.979(17013)	non tumor-specific	alt_3prime;intron_retention	yes
FCRL6_LS002	chr1:159800613|159802420:+	FCRL6	Fc receptor like 6	protein coding gene	no	ENST00000321935.10	0.417	0.063	0.796	0.01(97)	0.01(7)	0.027(468)	non tumor-specific	alt_3prime;exon_skip	yes
ENTPD5_LS012	chr14:73977374|73983018:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	ENST00000557325.5;ENST00000334696.10;ENST00000553284.5	16.996	32.782	7.206	0.924(8854)	0.974(684)	0.967(16805)	non tumor-specific	exon_skip	yes
UN_AC010619.1_LS0024	chr19:49466290|49468381:+	AC010619.1	-	protein coding gene	no	.	2.890	0.625	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATPAF2_LS0016	chr17:18007460|18016064:+	ATPAF2	ATP synthase mitochondrial F1 complex assembly factor 2	protein coding gene	no	.	3.996	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ATXN2L_LS033	chr16:28835399|28835549:+	ATXN2L	ataxin 2 like	protein coding gene	no	ENST00000340394.12;ENST00000325215.10;ENST00000395547.6;ENST00000336783.8;ENST00000382686.8;ENST00000564304.5;ENST00000570200.5;ENST00000565971.5;ENST00000562583.5	105.542	42.766	108.452	0.994(9521)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FAM172A_LS001	chr5:93621129|93737812:-	FAM172A	family with sequence similarity 172 member A	protein coding gene	yes	ENST00000502503.1	0.018	0.000	0.661	0.003(24)	0.001(1)	0.029(511)	non tumor-specific	nAS	yes
TRIM49_LS008	chr11:89807284|89808437:-	TRIM49	tripartite motif containing 49	protein coding gene	no	ENST00000329758.5	0.693	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_SSH3_LS0047	chr11:67311624|67311805:-	SSH3	slingshot protein phosphatase 3	protein coding gene	no	.	0.275	0.040	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
CKAP5_LS006	chr11:46751534|46752635:-	CKAP5	cytoskeleton associated protein 5	protein coding gene	no	ENST00000529230.5;ENST00000312055.9;ENST00000354558.7;ENST00000533413.5	125.341	48.365	54.378	0.992(9509)	0.993(697)	0.979(17018)	non tumor-specific	exon_skip	yes
AC009292.1_LS001	chr15:67835781|67837090:-	AC009292.1	-	lncRNA gene	no	ENST00000502156.1	1.241	0.000	0.719	0.001(12)	0(0)	0.017(290)	non tumor-specific	nAS	yes
UN_MFSD12_LS0026	chr19:3539260|3539947:+	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	0.395	0.215	0.000	0.037(350)	0.028(20)	0(0)	non tumor-specific	nAS	no
ACMSD_LS009	chr2:134859357|134863395:+	ACMSD	aminocarboxymuconate semialdehyde decarboxylase	protein coding gene	no	ENST00000392928.5	20.311	38.881	1.124	0.147(1412)	0.275(193)	0.049(854)	non tumor-specific	exon_skip	yes
TLN1_LS037	chr9:35712124|35712835:-	TLN1	talin 1	protein coding gene	no	ENST00000314888.9	119.787	98.743	81.093	0.969(9283)	0.99(695)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EMP3_UP_LS0002	chr19:48237985|48281622:+	EMP3	epithelial membrane protein 3	protein coding gene	no	.	0.300	0.019	0.000	0.019(181)	0.006(4)	0(0)	non tumor-specific	nAS	no
NFYA_LS008	chr6:41079164|41084046:+	NFYA	nuclear transcription factor Y subunit alpha	protein coding gene	no	ENST00000353205.5;ENST00000353205.5	16.360	7.997	3.691	0.944(9049)	0.963(676)	0.78(13564)	non tumor-specific	alt_5prime;exon_skip	yes
RNF34_LS011	chr12:121409777|121416159:+	RNF34	ring finger protein 34	protein coding gene	no	ENST00000557402.1	0.045	0.013	0.564	0.654(6266)	0.655(460)	0.003(52)	non tumor-specific	nAS	yes
SNRNP70_LS004	chr19:49085636|49090291:+	SNRNP70	small nuclear ribonucleoprotein U1 subunit 70	protein coding gene	no	ENST00000598984.5	0.212	0.219	2.050	0.941(9018)	0.907(637)	0.784(13621)	non tumor-specific	exon_skip	yes
UN_PPP1R13L_LS0034	chr19:45393001|45395436:-	PPP1R13L	protein phosphatase 1 regulatory subunit 13 like	protein coding gene	yes	.	5.067	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF28_LS0203	chr19:52840463|52840968:-	ZNF28	zinc finger protein 28	protein coding gene	no	.	2.228	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EXOC1_LS0016	chr4:55877757|55877917:+	EXOC1	exocyst complex component 1	protein coding gene	no	.	2.884	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	intron_retention	no
MRPL23-AS1_LS003	chr11:1985641|1989826:-	MRPL23-AS1	MRPL23 antisense RNA 1	lncRNA gene	no	ENST00000419080.1	1.599	0.132	0.696	0.073(696)	0.03(21)	0.026(458)	non tumor-specific	nAS	yes
UN_CPQ_LS0017	chr8:96953610|96981845:-	CPQ	carboxypeptidase Q	protein coding gene	no	.	7.509	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SUN5_LS009	chr20:33000135|33001212:-	SUN5	Sad1 and UNC84 domain containing 5	protein coding gene	no	ENST00000375523.7;ENST00000356173.7;ENST00000420875.5	3.978	0.000	0.689	0(3)	0(0)	0.014(245)	non tumor-specific	exon_skip	yes
UN_PAIP2B_LS0005	chr2:71202600|71226963:-	PAIP2B	poly(A) binding protein interacting protein 2B	protein coding gene	no	.	4.243	2.891	0.000	0.093(893)	0.138(97)	0(0)	non tumor-specific	alt_5prime	no
SLC4A8_LS029	chr12:51469788|51470392:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000535225.6;ENST00000358657.7;ENST00000604314.5;ENST00000453097.6;ENST00000319957.10;ENST00000514353.7;ENST00000551071.5;ENST00000546663.1	5.870	2.841	1.883	0.276(2643)	0.328(230)	0.6(10432)	non tumor-specific	alt_3prime	yes
UN_IL36RN_LS0010	chr2:113060937|113062453:+	IL36RN	interleukin 36 receptor antagonist	protein coding gene	no	.	2.769	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HOOK3_LS026	chr8:43013400|43018358:+	HOOK3	hook microtubule tethering protein 3	protein coding gene	no	ENST00000307602.8;ENST00000533539.1	6.912	4.665	8.255	0.922(8832)	0.972(682)	0.97(16859)	non tumor-specific	nAS	yes
DNAJB2_LS011	chr2:219281771|219281939:+	DNAJB2	DnaJ heat shock protein family (Hsp40) member B2	protein coding gene	no	ENST00000336576.9;ENST00000425450.5;ENST00000392086.8;ENST00000421532.5;ENST00000480537.5;ENST00000477917.5;ENST00000392087.6;ENST00000442681.5;ENST00000439026.1;ENST00000463463.5;ENST00000487855.1	100.683	75.945	108.166	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LIN37_LS0016	chr19:35754157|35754255:+	LIN37	lin-37 DREAM MuvB core complex component	protein coding gene	no	.	10.024	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ANKRD17_LS009	chr4:73097272|73098073:-	ANKRD17	ankyrin repeat domain 17	protein coding gene	no	ENST00000358602.8;ENST00000558247.5;ENST00000509867.6;ENST00000330838.10	37.554	26.185	29.600	0.972(9316)	0.989(694)	0.977(16989)	non tumor-specific	exon_skip	yes
PREX2_LS010	chr8:68053246|68055830:+	PREX2	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein coding gene	no	ENST00000288368.4;ENST00000529398.5;ENST00000517617.1	4.648	2.820	2.675	0.297(2849)	0.571(401)	0.755(13121)	non tumor-specific	nAS	yes
CCDC88B_LS025	chr11:64351616|64352130:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	ENST00000463837.5;ENST00000356786.9;ENST00000494080.5;ENST00000359902.2	13.211	4.175	11.628	0.721(6909)	0.66(463)	0.947(16454)	non tumor-specific	nAS	yes
UN_KRT6B_UP_LS0015	chr12:52471284|52487608:-	KRT6B	keratin 6B	protein coding gene	no	.	3781.327	1902.754	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
HOXA11-AS_LS005	chr7:27186263|27186683:+	HOXA11-AS	HOXA11 antisense RNA	lncRNA gene	no	ENST00000520395.2;ENST00000650141.1	3.607	3.152	2.531	0.455(4360)	0.409(287)	0.373(6484)	non tumor-specific	nAS	yes
UN_POPDC2_LS0002	chr3:119642561|119643049:-	POPDC2	popeye domain containing 2	protein coding gene	no	.	3.209	0.576	0.000	0.022(209)	0.024(17)	0(0)	non tumor-specific	nAS	no
IFIH1_LS004	chr2:162272387|162273795:-	IFIH1	interferon induced with helicase C domain 1	protein coding gene	no	ENST00000649979.1;ENST00000263642.2;ENST00000649554.1;ENST00000648433.1	42.712	23.235	12.464	0.989(9479)	0.997(700)	0.972(16896)	non tumor-specific	nAS	yes
CES4A_LS019	chr16:67004224|67008974:+	CES4A	carboxylesterase 4A	protein coding gene	no	.;.	3.238	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
KLRF1_LS006	chr12:9833452|9841812:+	KLRF1	killer cell lectin like receptor F1	protein coding gene	no	ENST00000617889.4	1.863	2.442	1.440	0.265(2540)	0.597(419)	0.578(10053)	non tumor-specific	exon_skip	yes
RAB3GAP2_LS032	chr1:220210876|220210955:-	RAB3GAP2	RAB3 GTPase activating non-catalytic protein subunit 2	protein coding gene	no	ENST00000358951.6;ENST00000484658.1;ENST00000474178.1	14.461	10.000	6.272	0.842(8070)	0.929(652)	0.936(16275)	non tumor-specific	exon_skip	yes
UN_SLC39A14_LS0002	chr8:22367408|22379427:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	.	0.666	0.532	0.000	0.017(159)	0.05(35)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TNS2_LS001	chr12:53047063|53051855:+	TNS2	tensin 2	protein coding gene	no	ENST00000379902.7	0.282	0.069	1.835	0.071(684)	0.095(67)	0.732(12724)	non tumor-specific	nAS	yes
UN_FBXO8_LS0005	chr4:174263092|174283410:-	FBXO8	F-box protein 8	protein coding gene	no	.	4.386	1.159	0.000	0.006(61)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
POLR2J4_LS017	chr7:44014783|44016434:-	POLR2J4	RNA polymerase II subunit J4, pseudogene	pseudogene	no	ENST00000326391.6;ENST00000418424.2	56.483	28.778	17.818	0.996(9542)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
FAM156A_LS037	chrX:52956755|52995306:-	FAM156A	family with sequence similarity 156 member A	protein coding gene	no	ENST00000615092.4	0.032	0.033	0.694	0.144(1382)	0.134(94)	0.143(2484)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LHCGR_LS011	chr2:48723696|48725676:-	LHCGR	luteinizing hormone/choriogonadotropin receptor	protein coding gene	no	ENST00000294954.11;ENST00000405626.5;ENST00000403273.5;ENST00000401907.5;ENST00000428232.2	3.234	0.668	1.357	0.023(216)	0.081(57)	0.255(4435)	non tumor-specific	nAS	yes
OBSCN_LS131	chr1:228366186|228366400:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000422127.5;ENST00000570156.6;ENST00000366707.9;ENST00000636875.1;ENST00000636476.1	3.705	1.746	6.043	0.203(1943)	0.368(258)	0.865(15033)	non tumor-specific	nAS	yes
TSC1_LS024	chr9:132912457|132921819:-	TSC1	TSC complex subunit 1	protein coding gene	yes	ENST00000647279.1	1.674	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	exon_skip	yes
TDGF1_LS003	chr3:46579147|46579232:+	TDGF1	teratocarcinoma-derived growth factor 1	protein coding gene	yes	ENST00000542931.6;ENST00000296145.5;ENST00000493282.5;ENST00000471721.1	4.623	4.228	1.256	0.155(1488)	0.323(227)	0.253(4401)	non tumor-specific	exon_skip;intron_retention	yes
UN_SOD2_LS0023	chr6:159679735|159679761:-	SOD2	superoxide dismutase 2	protein coding gene	yes	.	191.464	9.622	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
FRAS1_LS049	chr4:78448316|78450151:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000512123.3;ENST00000509802.1	1.906	2.971	1.612	0.599(5742)	0.744(522)	0.567(9861)	non tumor-specific	nAS	yes
UN_MAF_LS0004	chr16:79594553|79596071:-	MAF	MAF bZIP transcription factor	protein coding gene	yes	.	10.040	7.543	0.000	0.006(62)	0.019(13)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
STAU1_LS023	chr20:49159146|49174195:-	STAU1	staufen double-stranded RNA binding protein 1	protein coding gene	no	ENST00000456866.2	0.313	0.080	1.320	0.537(5141)	0.594(417)	0.658(11438)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SMCHD1_LS0002	chr18:2656261|2666870:+	SMCHD1	structural maintenance of chromosomes flexible hinge domain containing 1	protein coding gene	yes	.	2.372	0.173	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CRYM_LS004	chr16:21258845|21261254:-	CRYM	crystallin mu	protein coding gene	no	ENST00000570401.5;ENST00000543948.5;ENST00000219599.7	21.305	47.591	6.052	0.601(5754)	0.799(561)	0.846(14706)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SFTPB_LS0137	chr2:85668251|85668354:-	SFTPB	surfactant protein B	protein coding gene	no	.	5.201	2.579	0.000	0.011(104)	0.056(39)	0(0)	non tumor-specific	alt_5prime	no
UN_TFEC_LS0049	chr7:116141727|116144534:+	TFEC	transcription factor EC	protein coding gene	no	.	4.405	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ITGA6_LS0025	chr2:172469308|172470974:+	ITGA6	integrin subunit alpha 6	protein coding gene	no	.	4.216	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	alt_5prime	no
LDAH_LS019	chr2:20790398|20823037:-	LDAH	lipid droplet associated hydrolase	protein coding gene	no	ENST00000541941.5;ENST00000403006.6	0.144	0.099	0.950	0.34(3255)	0.387(272)	0.474(8242)	non tumor-specific	exon_skip	yes
TBC1D3F_LS009	chr17:36434895|36435225:-	TBC1D3F	TBC1 domain family member 3F	protein coding gene	no	ENST00000620210.1	0.699	0.265	3.574	0.211(2020)	0.111(78)	0.164(2856)	non tumor-specific	nAS	yes
UN_EPOR_LS0016	chr19:11383006|11383097:-	EPOR	erythropoietin receptor	protein coding gene	no	.	2.339	0.269	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SCLY_LS014	chr2:238082209|238082723:+	SCLY	selenocysteine lyase	protein coding gene	no	ENST00000482031.5	0.159	0.050	0.673	0.149(1427)	0.098(69)	0.074(1292)	non tumor-specific	alt_3prime	yes
USP30_LS019	chr12:109082743|109082843:+	USP30	ubiquitin specific peptidase 30	protein coding gene	no	ENST00000392784.6;ENST00000257548.9;ENST00000377883.7;ENST00000479219.5	19.789	14.828	10.885	0.979(9383)	0.991(696)	0.976(16967)	non tumor-specific	alt_3prime;exon_skip	yes
BSCL2_LS032	chr11:62707324|62709264:-	BSCL2	BSCL2 lipid droplet biogenesis associated, seipin	protein coding gene	no	ENST00000524862.5	0.016	0.119	0.678	0.577(5527)	0.684(480)	0.168(2922)	non tumor-specific	alt_5prime	yes
CPNE5_LS034	chr6:36822160|36823058:-	CPNE5	copine 5	protein coding gene	no	ENST00000244751.6;ENST00000633136.1;ENST00000633280.1	6.358	9.323	3.214	0.361(3459)	0.285(200)	0.784(13620)	non tumor-specific	exon_skip	yes
UN_AHNAK_LS0434	chr11:62520532|62520554:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.255	1.902	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL136528.2_LS001	chr1:3712438|3714187:-	AL136528.2	-	lncRNA gene	no	ENST00000416554.1	0.331	0.062	0.963	0.009(87)	0.007(5)	0.023(402)	non tumor-specific	nAS	yes
UN_TPD52L2_LS0085	chr20:63890902|63890938:-	TPD52L2	TPD52 like 2	protein coding gene	no	.	3.336	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MKI67_LS0139	chr10:128104894|128107805:+	MKI67	marker of proliferation Ki-67	protein coding gene	no	.	3.920	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPTLC3_UP_LS0007	chr20:12967210|12979352:+	SPTLC3	serine palmitoyltransferase long chain base subunit 3	protein coding gene	no	.	1.970	0.985	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MBTPS1_LS0039	chr16:84102107|84116037:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	.	3.752	0.179	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
GFAP_LS034	chr17:44913823|44915026:-	GFAP	glial fibrillary acidic protein	protein coding gene	no	ENST00000376990.8;ENST00000376990.8	0.127	0.012	2.195	0.08(764)	0.019(13)	0.111(1921)	non tumor-specific	alt_5prime;exon_skip	yes
STK10_LS006	chr5:172055776|172057349:-	STK10	serine/threonine kinase 10	protein coding gene	yes	ENST00000176763.9;ENST00000520476.1;ENST00000523615.1	36.985	16.117	18.483	0.985(9434)	0.993(697)	0.978(16997)	non tumor-specific	exon_skip	yes
RECK_LS009	chr9:36065624|36080605:+	RECK	reversion inducing cysteine rich protein with kazal motifs	protein coding gene	yes	ENST00000377966.3;ENST00000479053.1	8.007	6.908	7.869	0.805(7713)	0.929(652)	0.924(16065)	non tumor-specific	exon_skip	yes
UN_PTPRO_LS0059	chr12:15579385|15580039:+	PTPRO	protein tyrosine phosphatase receptor type U	protein coding gene	no	.	5.828	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PPP1R10_LS008	chr6:30604511|30604588:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	ENST00000376511.6	41.199	30.430	33.797	0.951(9107)	0.984(691)	0.979(17015)	non tumor-specific	nAS	yes
SS18_LS008	chr18:26035127|26038555:-	SS18	SS18 subunit of BAF chromatin remodeling complex	protein coding gene	yes	ENST00000579640.5;ENST00000269137.11;ENST00000585121.5;ENST00000579640.5;ENST00000269137.11;ENST00000585121.5;ENST00000579640.5;ENST00000269137.11;ENST00000585121.5	50.981	39.541	26.265	0.986(9446)	0.996(699)	0.964(16748)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PPP2R5C_LS0042	chr14:101824190|101831701:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	.	2.422	0.000	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PTCD2_LS015	chr5:72335096|72335794:+	PTCD2	pentatricopeptide repeat domain 2	protein coding gene	no	ENST00000380639.9;ENST00000511752.5;ENST00000486995.5;ENST00000308077.9;ENST00000510676.6;ENST00000493283.5	7.159	4.607	4.656	0.882(8448)	0.933(655)	0.935(16253)	non tumor-specific	alt_3prime;exon_skip	yes
ARMC2_LS019	chr6:108962127|108964180:+	ARMC2	armadillo repeat containing 2	protein coding gene	no	ENST00000368972.7;ENST00000392644.8;ENST00000481850.1	3.559	2.266	4.472	0.237(2269)	0.386(271)	0.915(15899)	non tumor-specific	alt_3prime	yes
TTC27_LS014	chr2:32733923|32736694:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000317907.8;ENST00000647819.1	25.737	13.749	13.261	0.986(9443)	0.997(700)	0.973(16907)	non tumor-specific	exon_skip	yes
UN_HLA-DRA_LS0067	chr6:32443921|32444669:+	HLA-DRA	major histocompatibility complex, class II, DR alpha	protein coding gene	no	.	834.995	87.100	0.000	0.016(157)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
TBC1D24_LS002	chr16:2475170|2496034:+	TBC1D24	TBC1 domain family member 24	protein coding gene	no	ENST00000567020.6;ENST00000569874.2;ENST00000646147.1;ENST00000293970.9	4.045	3.183	2.259	0.808(7737)	0.849(596)	0.845(14694)	non tumor-specific	nAS	yes
SUN1_LS047	chr7:853618|856358:+	SUN1	Sad1 and UNC84 domain containing 1	protein coding gene	no	ENST00000457861.1	0.118	0.102	0.702	0.07(667)	0.067(47)	0.165(2867)	non tumor-specific	exon_skip	yes
ZNF670_LS004	chr1:247039537|247078594:-	ZNF670	zinc finger protein 670	protein coding gene	no	ENST00000366503.2	4.407	2.316	1.931	0.74(7091)	0.849(596)	0.794(13808)	non tumor-specific	alt_5prime	yes
TMEM199_LS010	chr17:28359404|28360529:+	TMEM199	transmembrane protein 199	protein coding gene	no	ENST00000292114.7;ENST00000580868.5;ENST00000483505.6;ENST00000395404.7;ENST00000509083.2	39.338	23.131	34.814	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
NFS1_LS017	chr20:35692296|35696377:-	NFS1	NFS1 cysteine desulfurase	protein coding gene	no	ENST00000421540.1	0.044	0.022	0.712	0.359(3442)	0.395(277)	0.234(4073)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_WWOX_LS0101	chr16:78984807|78996202:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	1.934	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
MAP3K3_LS022	chr17:63689735|63690264:+	MAP3K3	mitogen-activated protein kinase kinase kinase 3	protein coding gene	no	ENST00000579585.5;ENST00000584573.5;ENST00000361733.7;ENST00000361357.7;ENST00000577395.5;ENST00000577597.5	20.990	18.367	28.520	0.966(9257)	0.989(694)	0.979(17012)	non tumor-specific	alt_5prime	yes
RPA1_LS011	chr17:1872211|1872434:+	RPA1	replication protein A1	protein coding gene	yes	ENST00000573924.1	0.014	0.011	0.605	0.671(6425)	0.667(468)	0.029(511)	non tumor-specific	nAS	yes
PER2_LS022	chr2:238268974|238271312:-	PER2	period circadian regulator 2	protein coding gene	yes	ENST00000254657.7;ENST00000355768.6	9.282	9.707	5.866	0.827(7922)	0.959(673)	0.932(16201)	non tumor-specific	exon_skip	yes
EPB42_LS003	chr15:43203275|43206330:-	EPB42	erythrocyte membrane protein band 4.2	protein coding gene	no	ENST00000648595.1;ENST00000568508.6;ENST00000540029.5;ENST00000441366.6;ENST00000622454.4;ENST00000567019.2	4.173	1.024	1.884	0.023(225)	0.071(50)	0.289(5020)	non tumor-specific	exon_skip	yes
PLEKHA4_LS010	chr19:48852326|48853682:-	PLEKHA4	pleckstrin homology domain containing A4	protein coding gene	no	ENST00000355496.9;ENST00000263265.10;ENST00000595867.1;ENST00000594195.1	14.042	8.984	27.436	0.951(9111)	0.994(698)	0.966(16785)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SPON1_LS001	chr11:13963142|13982847:+	SPON1	spondin 1	protein coding gene	no	ENST00000576479.3	12.433	7.369	7.526	0.622(5956)	0.839(589)	0.849(14757)	non tumor-specific	nAS	yes
UN_SORBS2_LS0056	chr4:185666206|185676997:-	SORBS2	sorbin and SH3 domain containing 2	protein coding gene	no	.	1.348	0.187	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TLR3_LS008	chr4:186084172|186084645:+	TLR3	toll like receptor 3	protein coding gene	no	ENST00000296795.7;ENST00000512264.1;ENST00000504367.1	6.682	7.348	5.006	0.905(8667)	0.949(666)	0.884(15358)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PDLIM7_LS0019	chr5:177484187|177488068:-	PDLIM7	PDZ and LIM domain 7	protein coding gene	no	.	16.823	1.705	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM111A_LS0038	chr11:59145419|59145827:+	FAM111A	family with sequence similarity 111 member A	protein coding gene	no	.	1.134	0.172	0.000	0.084(804)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC092170.1_UP_LS0024	chr2:117413865|117413888:-	AC092170.1	-	pseudogene	no	.	6.722	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HEATR1_LS026	chr1:236576949|236581222:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	ENST00000366582.7;ENST00000366581.6	14.318	5.238	8.210	0.853(8177)	0.902(633)	0.944(16414)	non tumor-specific	nAS	yes
UN_CRTAP_LS0030	chr3:33116440|33142737:-	CRTAP	cartilage associated protein	protein coding gene	no	.	7.021	1.505	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	nAS	no
LPAR6_LS001	chr13:48389812|48391400:-	LPAR6	lysophosphatidic acid receptor 6	protein coding gene	no	ENST00000464486.5	0.816	0.496	0.940	0.435(4166)	0.533(374)	0.436(7574)	non tumor-specific	exon_skip;intron_retention	yes
UN_SERPINA1_LS0015	chr14:94378584|94382929:+	SERPINA1	serpin family A member 1	protein coding gene	no	.	6.298	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CA5B_LS0006	chrX:15693058|15721497:+	CA5B	carbonic anhydrase 5B	protein coding gene	no	.	2.806	1.502	0.000	0.268(2572)	0.415(291)	0(0)	non tumor-specific	exon_skip	no
RNF123_LS057	chr3:49721105|49721185:+	RNF123	ring finger protein 123	protein coding gene	no	ENST00000327697.10;ENST00000457726.5;ENST00000486102.5;ENST00000487805.6;ENST00000433785.1;ENST00000498376.1	39.172	24.592	61.499	0.971(9301)	0.983(690)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
TRAF2_LS008	chr9:136889736|136890349:+	TRAF2	TNF receptor associated factor 2	protein coding gene	no	ENST00000414589.1	0.354	0.338	1.716	0.274(2622)	0.325(228)	0.607(10544)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SPATA3_LS012	chr2:231012697|231013874:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000452881.5	87.881	0.000	0.813	0(1)	0(0)	0.003(49)	non tumor-specific	nAS	yes
IFT46_LS006	chr11:118552335|118554459:-	IFT46	intraflagellar transport 46	protein coding gene	no	ENST00000264021.7;ENST00000264020.6;ENST00000530872.5;ENST00000531201.5;ENST00000525060.1;ENST00000531939.5;ENST00000534156.5	52.591	38.808	40.378	0.994(9528)	0.997(700)	0.978(17007)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NCKIPSD_LS0027	chr3:48680229|48682045:-	NCKIPSD	NCK interacting protein with SH3 domain	protein coding gene	no	.	1.333	0.126	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
XRRA1_LS030	chr11:74910012|74921214:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	ENST00000526047.1;ENST00000533598.5	0.313	0.180	0.761	0.338(3234)	0.301(211)	0.276(4802)	non tumor-specific	exon_skip	yes
UN_SSX2IP_LS0011	chr1:84656002|84656348:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	.	7.427	4.756	0.000	0.602(5764)	0.538(378)	0(0)	non tumor-specific	alt_3prime	no
XIST_LS010	chrX:73829231|73830623:-	XIST	X inactive specific transcript	lncRNA gene	yes	ENST00000648829.1;ENST00000648091.1;ENST00000648927.1	2.308	0.278	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	yes
ZNF569_LS018	chr19:37465473|37468981:-	ZNF569	zinc finger protein 569	protein coding gene	no	ENST00000591073.1	0.225	0.063	0.672	0.006(56)	0.013(9)	0.031(536)	non tumor-specific	exon_skip	yes
UN_NEK3_UP_LS0001	chr13:52161278|52167129:-	NEK3	NIMA related kinase 3	protein coding gene	no	.	1.536	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
TNXB_LS020	chr6:32052993|32053388:-	TNXB	tenascin XB	protein coding gene	no	ENST00000644971.2;ENST00000647633.1;ENST00000375244.7;ENST00000611016.2	7.014	22.662	27.563	0.567(5436)	0.964(677)	0.946(16438)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SIPA1_LS0054	chr11:65650479|65650572:+	SIPA1	signal-induced proliferation-associated 1	protein coding gene	no	.	15.840	2.980	0.000	0.009(86)	0.011(8)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MRVI1-AS1_LS003	chr11:10586126|10589012:+	MRVI1-AS1	IRAG1 antisense RNA 1	lncRNA gene	no	ENST00000529979.5	0.810	0.000	0.763	0(4)	0(0)	0.03(513)	non tumor-specific	nAS	yes
UN_CASR_LS0011	chr3:122201639|122201686:-	CASR	calcium sensing receptor	protein coding gene	no	.	7.351	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUSC3_LS0059	chr8:15748465|15751997:+	TUSC3	tumor suppressor candidate 3	protein coding gene	no	.	2.748	0.020	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MIR3681HG_LS004	chr2:12007843|12083449:+	MIR3681HG	MIR3681 host gene	lncRNA gene	no	ENST00000450916.1	0.183	0.010	0.752	0.003(30)	0.001(1)	0.01(179)	non tumor-specific	nAS	yes
UN_ENPEP_LS0007	chr4:110368640|110369944:+	ENPEP	glutamyl aminopeptidase	protein coding gene	no	.	1.939	3.015	0.000	0.021(203)	0.101(71)	0(0)	non tumor-specific	exon_skip	no
ALB_LS005	chr4:73404406|73405116:+	ALB	Fas binding factor 1	protein coding gene	no	ENST00000441319.5;ENST00000295897.8;ENST00000621628.4;ENST00000515133.5;ENST00000621085.4;ENST00000415165.6;ENST00000509063.5;ENST00000401494.7;ENST00000441319.5;ENST00000295897.8;ENST00000621628.4;ENST00000515133.5;ENST00000621085.4;ENST00000415165.6;ENST00000509063.5;ENST00000401494.7	452.118	4137.097	1.931	0.255(2444)	0.447(314)	0.657(11417)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CIAO3_LS019	chr16:737329|739643:-	CIAO3	cytosolic iron-sulfur assembly component 3	protein coding gene	no	ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5;ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5;ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5	33.853	21.893	18.610	0.992(9501)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_EHD1_LS0041	chr11:64853863|64854315:+	EHD1	EH domain containing 1	protein coding gene	no	.	1.896	0.458	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
CNNM1_LS002	chr10:99357655|99360835:+	CNNM1	cyclin and CBS domain divalent metal cation transport mediator 1	protein coding gene	no	ENST00000356713.4	4.979	2.480	1.565	0.312(2993)	0.281(197)	0.498(8663)	non tumor-specific	nAS	yes
AC118549.1_LS007	chr1:77581069|77581776:-	AC118549.1	-	protein coding gene	no	ENST00000481346.5;ENST00000370801.7;ENST00000476275.5;ENST00000370798.5;ENST00000476195.5	24.568	16.668	20.708	0.974(9330)	0.989(694)	0.973(16910)	non tumor-specific	nAS	yes
UN_AP4M1_LS0010	chr7:100106780|100110191:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	.	1.378	0.014	0.000	0.008(72)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_PLEKHA5_LS0074	chr12:19369777|19375531:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	.	12.633	3.952	0.000	0.017(167)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RAPGEF1_LS0070	chr9:131604053|131619051:-	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	1.028	0.313	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_INPP1_LS0002	chr2:190344074|190348888:+	INPP1	inositol polyphosphate-1-phosphatase	protein coding gene	no	.	1.070	0.241	0.000	0.007(65)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ANP32B_LS002	chr9:97984692|97994631:+	ANP32B	acidic nuclear phosphoprotein 32 family member B	protein coding gene	no	ENST00000473205.1	0.254	0.152	0.795	0.091(873)	0.073(51)	0.342(5936)	non tumor-specific	nAS	yes
ATP6V1G2-DDX39B_LS018	chr6:31542443|31544698:-	ATP6V1G2-DDX39B	ATP6V1G2-DDX39B readthrough (NMD candidate)	protein coding gene	no	ENST00000475917.1	0.106	0.006	0.743	0.021(204)	0.006(4)	0.064(1118)	non tumor-specific	nAS	yes
UN_KALRN_LS0047	chr3:124398871|124408283:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	10.247	1.947	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MIR4689_UP_LS0003	chr1:5986327|5993665:-	MIR4689	microRNA 4689	small non-coding RNA gene	no	.	0.884	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PAK3_LS021	chrX:111146565|111147737:+	PAK3	p21 (RAC1) activated kinase 3	protein coding gene	no	ENST00000372010.5;ENST00000518291.5;ENST00000429193.5;ENST00000360648.8;ENST00000262836.6	0.154	0.895	1.215	0.028(266)	0.014(10)	0.133(2318)	non tumor-specific	exon_skip	yes
UN_AL138479.1_UP_LS0004	chr14:53947308|53951853:-	AL138479.1	-	pseudogene	no	.	6.374	0.861	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
PIK3C2G_LS017	chr12:18371311|18372540:+	PIK3C2G	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein coding gene	no	ENST00000538458.1	0.531	0.091	0.759	0.017(161)	0.078(55)	0.037(636)	non tumor-specific	nAS	yes
AC107419.1_LS004	chrX:27336493|27398751:-	AC107419.1	-	lncRNA gene	no	ENST00000422048.5	3.134	0.110	0.752	0.036(341)	0.004(3)	0.039(678)	non tumor-specific	nAS	yes
GAK_LS053	chr4:904779|913607:-	GAK	cyclin G associated kinase	protein coding gene	no	ENST00000512325.3	0.072	0.114	1.319	0.771(7384)	0.852(598)	0.659(11456)	non tumor-specific	alt_3prime;exon_skip	yes
SH2B2_LS008	chr7:102314427|102314512:+	SH2B2	SH2B adaptor protein 2	protein coding gene	no	ENST00000617975.2;ENST00000536178.3	25.895	7.825	8.690	0.944(9041)	0.909(638)	0.97(16865)	non tumor-specific	nAS	yes
COL12A1_LS035	chr6:75123404|75123948:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6	26.246	13.746	17.964	0.827(7927)	0.915(642)	0.87(15118)	non tumor-specific	exon_skip;intron_retention	yes
UN_ATP2C1_LS0038	chr3:130969396|130975337:+	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	.	2.362	0.019	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ACPP_LS007	chr3:132332344|132333406:+	ACPP	acid phosphatase 3	protein coding gene	no	ENST00000489084.5	0.100	0.104	0.810	0.096(924)	0.165(116)	0.025(435)	non tumor-specific	alt_3prime;exon_skip	yes
SERPINA5_LS017	chr14:94587981|94590041:+	SERPINA5	serpin family A member 5	protein coding gene	no	ENST00000553780.5;ENST00000329597.11;ENST00000556730.1;ENST00000554760.5;ENST00000554866.5;ENST00000556775.5;ENST00000554276.1	77.272	163.112	5.496	0.55(5271)	0.823(578)	0.816(14184)	non tumor-specific	nAS	yes
UN_PHF12_LS0028	chr17:28925259|28926782:-	PHF12	PHD finger protein 12	protein coding gene	no	.	1.837	0.326	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TOX2_LS001	chr20:43914990|43973367:+	TOX2	TOX high mobility group box family member 2	protein coding gene	no	ENST00000341197.8	1.368	0.972	1.972	0.68(6517)	0.781(548)	0.691(12005)	non tumor-specific	exon_skip	yes
UN_HERC1_LS0061	chr15:63658718|63659452:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	.	1.209	0.133	0.000	0.011(106)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM198B_LS0037	chr12:55835039|55835464:+	TMEM198B	transmembrane protein 198B (pseudogene)	pseudogene	no	.	3.989	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LYPLA2_LS0084	chr1:23795160|23795323:-	LYPLA2	lysophospholipase 2	protein coding gene	no	.	5.775	1.457	0.000	0.011(107)	0.006(4)	0(0)	non tumor-specific	nAS	no
MTOR_LS023	chr1:11130777|11133080:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	24.864	17.740	15.195	0.961(9211)	0.984(691)	0.975(16954)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GSTK1_LS0013	chr7:143265014|143268812:-	GSTK1	glutathione S-transferase kappa 1	protein coding gene	no	.	0.792	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ABCA8_LS003	chr17:68869779|68875260:-	ABCA8	ATP binding cassette subfamily A member 8	protein coding gene	no	ENST00000269080.6;ENST00000430352.6;ENST00000586539.5	13.749	26.228	50.734	0.515(4937)	0.962(675)	0.943(16396)	non tumor-specific	exon_skip	yes
TUBGCP3_LS002	chr13:112489697|112499045:-	TUBGCP3	tubulin gamma complex associated protein 3	protein coding gene	no	ENST00000261965.7;ENST00000649778.1	20.864	11.175	26.967	0.986(9443)	0.994(698)	0.978(16996)	non tumor-specific	exon_skip	yes
ATAD3A_LS005	chr1:1517412|1517716:+	ATAD3A	ATPase family AAA domain containing 3A	protein coding gene	no	ENST00000378756.7;ENST00000378755.9;ENST00000339113.8;ENST00000536055.5;ENST00000439513.1	39.956	15.793	4.084	0.996(9540)	0.996(699)	0.947(16462)	non tumor-specific	alt_3prime;exon_skip	yes
MIEF1_LS020	chr22:39514224|39515230:+	MIEF1	mitochondrial elongation factor 1	protein coding gene	no	ENST00000402881.5	0.710	0.259	0.710	0.147(1408)	0.158(111)	0.15(2605)	non tumor-specific	intron_retention	yes
UN_ADGRG1_LS0211	chr16:57664070|57664114:+	ADGRG1	adhesion G protein-coupled receptor G1	protein coding gene	no	.	443.368	14.265	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARRB1_LS006	chr11:75271724|75272895:-	ARRB1	arrestin beta 1	protein coding gene	no	ENST00000420843.6;ENST00000531012.1	7.028	13.800	10.199	0.949(9090)	0.989(694)	0.962(16724)	non tumor-specific	exon_skip	yes
RHOH_LS016	chr4:40205832|40209463:+	RHOH	ras homolog family member H	protein coding gene	no	ENST00000514143.1	0.391	0.082	0.697	0.021(202)	0.02(14)	0.056(966)	non tumor-specific	exon_skip	yes
UN_TLE4_LS0016	chr9:79718971|79719545:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	.	1.046	0.968	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CLVS1_LS0022	chr8:61239552|61299677:+	CLVS1	clavesin 1	protein coding gene	no	.	2.320	0.456	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
DOCK10_LS037	chr2:224837831|224839954:-	DOCK10	dedicator of cytokinesis 10	protein coding gene	no	ENST00000409592.7;ENST00000258390.11;ENST00000644695.1;ENST00000645028.1;ENST00000472652.1	6.596	2.995	3.639	0.774(7411)	0.862(605)	0.842(14631)	non tumor-specific	intron_retention	yes
RPP40_LS004	chr6:4996420|4999809:-	RPP40	ribonuclease P/MRP subunit p40	protein coding gene	no	ENST00000618533.4	0.484	0.487	1.115	0.623(5965)	0.474(333)	0.448(7792)	non tumor-specific	exon_skip	yes
UN_CCSER1_LS0083	chr4:91268985|91300012:-	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	.	4.805	1.184	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF150_LS004	chr4:140944810|140947654:-	RNF150	ring finger protein 150	protein coding gene	no	ENST00000515057.1	0.098	0.067	1.127	0.223(2141)	0.407(286)	0.196(3413)	non tumor-specific	nAS	yes
PRXL2B_LS001	chr1:2586591|2587091:+	PRXL2B	peroxiredoxin like 2B	protein coding gene	no	ENST00000493183.5;ENST00000474659.5	0.340	0.308	0.969	0.418(4003)	0.395(277)	0.448(7785)	non tumor-specific	nAS	yes
UN_SLC22A31_LS0003	chr16:89196223|89197298:-	SLC22A31	solute carrier family 22 member 31	protein coding gene	no	.	5.063	1.380	0.000	0.011(105)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_RNA5SP281_UP_LS0034	chr9:31973112|32267640:+	RNA5SP281	RNA, 5S ribosomal pseudogene 281	no	no	.	2.342	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC022145.1_UP_LS0001	chr19:22921209|22932828:-	AC022145.1	-	lncRNA gene	no	.	0.917	0.158	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
MAOB_LS007	chrX:43781544|43793419:-	MAOB	monoamine oxidase B	protein coding gene	no	ENST00000378069.4	61.504	93.747	48.418	0.827(7926)	0.993(697)	0.942(16381)	non tumor-specific	nAS	yes
CCDC120_LS002	chrX:49059059|49061959:+	CCDC120	coiled-coil domain containing 120	protein coding gene	no	ENST00000496529.6;ENST00000606812.5;ENST00000603906.1	0.718	0.517	1.549	0.616(5903)	0.792(556)	0.28(4860)	non tumor-specific	alt_5prime	yes
RYR3_LS103	chr15:33835072|33836906:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000635749.1	2.350	1.382	3.152	0.045(434)	0.093(65)	0.657(11425)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC233728.2_UP_LS0001	chrX:53491335|53532836:-	AC233728.2	-	pseudogene	no	.	3.709	0.467	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCNT2_LS0019	chr2:134947899|134953230:+	CCNT2	cyclin T2	protein coding gene	no	.	2.577	0.119	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
RHCG_LS010	chr15:89471855|89472722:-	RHCG	Rh family C glycoprotein	protein coding gene	no	ENST00000560081.5;ENST00000560081.5	40.828	172.307	1.430	0.135(1289)	0.154(108)	0.451(7836)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SH3TC1_LS037	chr4:8225216|8226980:+	SH3TC1	SH3 domain and tetratricopeptide repeats 1	protein coding gene	no	ENST00000506360.5;ENST00000502669.5;ENST00000245105.7;ENST00000515682.5;ENST00000514274.1;ENST00000509553.1	17.480	10.701	9.579	0.975(9341)	0.99(695)	0.949(16499)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DIAPH2_LS0050	chrX:97238873|97247715:+	DIAPH2	diaphanous related formin 2	protein coding gene	no	.	1.166	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL138900.2_UP_LS0008	chr1:157291982|157310583:-	AL138900.2	-	lncRNA gene	no	.	6.050	0.881	0.000	0.029(277)	0.077(54)	0(0)	non tumor-specific	nAS	no
UN_PTOV1-AS1_LS0007	chr19:49844892|49851568:-	PTOV1-AS1	PTOV1 antisense RNA 1	lncRNA gene	no	.	1.017	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0027	chr21:8397138|8441203:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	164.094	41.882	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
CEP164P1_LS001	chr10:45004075|45015962:-	CEP164P1	centrosomal protein 164 pseudogene 1	pseudogene	no	ENST00000456938.6	1.151	0.750	0.675	0.016(149)	0.004(3)	0.013(234)	non tumor-specific	nAS	yes
AC245123.1_LS002	chr8:2595700|2596625:-	AC245123.1	-	lncRNA gene	no	ENST00000612422.1	2.200	0.069	0.882	0.008(73)	0.006(4)	0.198(3450)	non tumor-specific	nAS	yes
CCNT2_LS017	chr2:134946465|134947736:+	CCNT2	cyclin T2	protein coding gene	no	ENST00000419781.5	5.654	2.899	6.608	0.695(6660)	0.775(544)	0.931(16178)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RAPGEF6_LS030	chr5:131508207|131510314:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000509018.5;ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000308008.10;ENST00000515170.5;ENST00000510071.5;ENST00000514179.5;ENST00000513227.5;ENST00000504575.5;ENST00000504039.2	5.378	3.146	2.972	0.615(5897)	0.789(554)	0.879(15285)	non tumor-specific	nAS	yes
WIPF1_LS017	chr2:174597858|174598171:-	WIPF1	WAS/WASL interacting protein family member 1	protein coding gene	no	ENST00000392546.6	0.201	0.319	0.687	0.077(741)	0.081(57)	0.092(1594)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CHADL_LS0007	chr22:41230438|41230562:-	CHADL	chondroadherin like	protein coding gene	no	.	2.180	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF451_LS003	chr6:57090274|57090833:+	ZNF451	zinc finger protein 451	protein coding gene	no	ENST00000502749.1	0.083	0.164	0.661	0.42(4024)	0.436(306)	0.121(2104)	non tumor-specific	alt_3prime;exon_skip	yes
GLIPR1L2_LS002	chr12:75391350|75403017:+	GLIPR1L2	GLIPR1 like 2	protein coding gene	no	ENST00000378692.7	0.260	0.188	0.856	0.086(825)	0.226(159)	0.349(6074)	non tumor-specific	alt_5prime;exon_skip	yes
RAB18_LS007	chr10:27509930|27526828:+	RAB18	RAB18, member RAS oncogene family	protein coding gene	yes	ENST00000535776.5;ENST00000356940.10;ENST00000621805.4;ENST00000465772.5;ENST00000423465.1	64.911	54.407	62.687	0.993(9512)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip;mutex_exons	yes
GCNT2_LS008	chr6:10521594|10621351:+	GCNT2	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein coding gene	no	ENST00000489819.5	0.113	0.069	0.631	0.047(446)	0.205(144)	0.023(404)	non tumor-specific	exon_skip	yes
AC010127.1_LS021	chr2:166171558|166199639:+	AC010127.1	-	lncRNA gene	no	ENST00000447809.2;ENST00000630020.2	2.010	0.174	1.028	0.006(59)	0.009(6)	0.15(2611)	non tumor-specific	nAS	yes
UN_ARMC12_UP_LS0001	chr6:35731585|35733462:+	ARMC12	armadillo repeat containing 12	protein coding gene	no	.	1.324	0.344	0.000	0.005(52)	0.007(5)	0(0)	non tumor-specific	nAS	no
LINC01102_LS005	chr2:104507406|104512043:+	LINC01102	long intergenic non-protein coding RNA 1102	lncRNA gene	no	ENST00000447380.1	4.468	0.877	11.154	0.112(1071)	0.05(35)	0.21(3650)	non tumor-specific	nAS	yes
GRIP1_LS001	chr12:66349246|66353417:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000398016.7;ENST00000359742.8;ENST00000538164.5;ENST00000538211.5;ENST00000535323.1	3.819	2.175	3.941	0.698(6684)	0.741(520)	0.658(11446)	non tumor-specific	exon_skip	yes
NBEAL2_LS019	chr3:46995633|46995714:+	NBEAL2	neurobeachin like 2	protein coding gene	no	ENST00000450053.7;ENST00000416683.5	19.980	10.395	11.757	0.79(7568)	0.852(598)	0.961(16699)	non tumor-specific	nAS	yes
AC004057.1_LS001	chr4:113214428|113217056:-	AC004057.1	-	pseudogene	no	ENST00000356247.4	0.110	0.000	0.705	0.001(13)	0(0)	0.006(101)	non tumor-specific	nAS	yes
UN_TAF15_LS0177	chr17:35844623|35844771:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	25.126	3.498	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARHGAP12_LS026	chr10:31861658|31908172:-	ARHGAP12	Rho GTPase activating protein 12	protein coding gene	no	ENST00000375245.8;ENST00000396144.8;ENST00000311380.8;ENST00000375250.9;ENST00000344936.6	17.568	15.783	10.112	0.899(8618)	0.972(682)	0.958(16657)	non tumor-specific	exon_skip	yes
RASA4B_LS013	chr7:102491123|102493116:-	RASA4B	RAS p21 protein activator 4B	protein coding gene	no	ENST00000465829.5;ENST00000495352.5;ENST00000306682.6	8.215	6.701	1.172	0.935(8962)	0.95(667)	0.251(4370)	non tumor-specific	exon_skip;mutex_exons	yes
UN_USP9YP28_UP_LS0006	chrY:18991578|19441268:-	USP9YP28	USP9Y pseudogene 28	pseudogene	no	.	3.453	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MLLT1_LS0019	chr19:6210900|6210950:+	MLLT1	MLLT1 super elongation complex subunit	protein coding gene	yes	.	5.681	0.159	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RF00002_UP_LS0078	chr22:11703167|12177922:-	RF00002	-	small non-coding RNA gene	no	.	3.718	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SUCLG1_LS020	chr2:84449752|84459173:-	SUCLG1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein coding gene	no	ENST00000393868.6;ENST00000442240.5;ENST00000430989.1	40.507	55.356	79.286	0.995(9531)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGAP33_LS010	chr19:35779124|35780211:+	ARHGAP33	Rho GTPase activating protein 33	protein coding gene	no	ENST00000378944.9;ENST00000590893.5;ENST00000314737.9;ENST00000007510.8	12.749	5.019	18.995	0.619(5927)	0.429(301)	0.975(16948)	non tumor-specific	nAS	yes
CIRBP_LS009	chr19:1261641|1270928:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	.;.	2.415	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP003716.1_LS003	chr11:67888324|67906010:+	AP003716.1	-	lncRNA gene	no	ENST00000533670.1	0.124	0.093	0.688	0.026(250)	0.058(41)	0.002(30)	non tumor-specific	nAS	yes
UN_SNAP29_LS0003	chr22:20870533|20870855:+	SNAP29	synaptosome associated protein 29	protein coding gene	no	.	2.264	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SI_LS010	chr3:164996772|164998540:-	SI	sucrase-isomaltase	protein coding gene	no	ENST00000264382.7	14.592	21.343	1.381	0.097(927)	0.142(100)	0.06(1048)	non tumor-specific	nAS	yes
UN_CASC15_LS0073	chr6:21886309|21909470:+	CASC15	cancer susceptibility 15	lncRNA gene	no	.	3.205	0.264	0.000	0.043(414)	0.038(27)	0(0)	non tumor-specific	nAS	no
AC111006.1_LS006	chr4:42264185|42267069:+	AC111006.1	-	lncRNA gene	no	ENST00000645181.1	1.747	1.961	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	nAS	yes
ALG1L2_LS002	chr3:130082036|130091261:+	ALG1L2	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein coding gene	no	ENST00000425059.1	1.217	0.000	0.859	0.006(56)	0(0)	0.01(171)	non tumor-specific	nAS	yes
MYO10_LS020	chr5:16704685|16710908:-	MYO10	myosin X	protein coding gene	no	ENST00000274203.13;ENST00000513610.5;ENST00000515803.5;ENST00000505695.5;ENST00000513882.5;ENST00000506343.5;ENST00000512061.5;ENST00000510401.6	37.015	18.720	10.289	0.905(8669)	0.959(673)	0.931(16180)	non tumor-specific	alt_3prime	yes
COL9A3_LS037	chr20:62836333|62836478:+	COL9A3	collagen type IX alpha 3 chain	protein coding gene	no	ENST00000649368.1;ENST00000343916.7;ENST00000466192.5	17.087	5.802	9.830	0.633(6061)	0.689(484)	0.915(15904)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL591178.1_UP_LS0008	chr1:23986274|24010507:+	AL591178.1	-	lncRNA gene	no	.	2.298	1.221	0.000	0.007(70)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_AC009093.10_LS0030	chr16:29260267|29302287:+	AC009093.10	-	lncRNA gene	no	.	2.160	0.315	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
LSM4_LS012	chr19:18312702|18323018:-	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	ENST00000252816.10;ENST00000252816.10	0.163	1.083	0.891	0.848(8129)	0.866(608)	0.474(8231)	non tumor-specific	alt_3prime;exon_skip	yes
MYO9A_LS036	chr15:71935484|71938852:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000356056.9;ENST00000564571.5;ENST00000444904.5;ENST00000563542.5;ENST00000566885.5;ENST00000566744.5;ENST00000563648.1;ENST00000565528.1	1.090	0.881	3.668	0.789(7564)	0.876(615)	0.902(15673)	non tumor-specific	nAS	yes
UN_AL445472.1_LS0007	chrX:55908800|56002825:+	AL445472.1	-	lncRNA gene	no	.	1.868	0.909	0.000	0.015(145)	0.031(22)	0(0)	non tumor-specific	nAS	no
RNF212B_LS013	chr14:23262711|23264174:+	RNF212B	ring finger protein 212B	protein coding gene	no	ENST00000470818.5	0.290	0.026	0.749	0.012(118)	0.095(67)	0.004(73)	non tumor-specific	exon_skip	yes
UN_HDGF_LS0079	chr1:156742934|156743084:+	HDGF	heparin binding growth factor	protein coding gene	no	.	3.239	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004830.1_LS0005	chr7:50869908|50898784:-	AC004830.1	-	lncRNA gene	no	.	1.798	0.067	0.000	0.02(191)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LAPTM5_LS0007	chr1:30732657|30739878:+	LAPTM5	lysosomal protein transmembrane 5	protein coding gene	no	.	3.079	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNK4_LS0028	chr17:42796548|42796686:+	WNK4	WNK lysine deficient protein kinase 4	protein coding gene	no	.	8.417	3.196	0.000	0.018(169)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
AC006445.2_LS001	chr4:13632182|13632491:-	AC006445.2	-	pseudogene	no	ENST00000510061.2	0.202	0.000	0.627	0(3)	0(0)	0.07(1214)	non tumor-specific	nAS	yes
UN_MAP4K1_LS0024	chr19:38614439|38616195:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	.	1.471	0.176	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AQR_LS030	chr15:34940999|34942012:-	AQR	aquarius intron-binding spliceosomal factor	protein coding gene	no	ENST00000156471.9;ENST00000543879.6	17.600	11.789	7.882	0.87(8332)	0.947(665)	0.951(16533)	non tumor-specific	nAS	yes
UN_ZNF260_LS0025	chr19:36515014|36515650:-	ZNF260	zinc finger protein 260	protein coding gene	no	.	1.105	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	intron_retention	no
LINC00893_LS011	chrX:149534374|149536174:-	LINC00893	long intergenic non-protein coding RNA 893	lncRNA gene	no	ENST00000618757.4;ENST00000447209.5;ENST00000431214.5;ENST00000608342.5	0.405	0.147	2.796	0.332(3178)	0.346(243)	0.844(14669)	non tumor-specific	nAS	yes
UN_MUC4_LS0052	chr3:195772661|195773443:+	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	5.997	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SAMD9L_LS012	chr7:93145532|93148194:-	SAMD9L	sterile alpha motif domain containing 9 like	protein coding gene	yes	ENST00000439952.5;ENST00000439952.5	0.157	0.117	0.669	0.32(3070)	0.486(341)	0.12(2092)	non tumor-specific	alt_3prime;exon_skip	yes
AC127894.1_LS002	chr12:69219580|69222494:+	AC127894.1	-	lncRNA gene	no	ENST00000650080.1	3.936	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
CROCCP3_LS001	chr1:16469007|16475825:-	CROCCP3	CROCC pseudogene 3	pseudogene	no	ENST00000591348.5	0.652	0.151	0.793	0.022(211)	0.014(10)	0.181(3149)	non tumor-specific	nAS	yes
UN_HRAT17_LS0001	chr7:112956711|112973605:-	HRAT17	-	lncRNA gene	no	.	2.917	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
POLD2_LS026	chr7:44122109|44123511:-	POLD2	DNA polymerase delta 2, accessory subunit	protein coding gene	no	ENST00000610533.4;ENST00000436844.5;ENST00000470867.5;ENST00000496539.1;ENST00000610533.4;ENST00000436844.5;ENST00000470867.5;ENST00000496539.1	30.012	15.604	37.655	0.97(9293)	0.979(687)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip	yes
KLF18_LS001	chr1:44138011|44138664:-	KLF18	Kruppel like factor 18	protein coding gene	no	ENST00000634670.1	0.574	0.000	0.680	0.011(102)	0.001(1)	0.001(19)	non tumor-specific	nAS	yes
UN_PDE9A_LS0054	chr21:42768292|42768557:+	PDE9A	phosphodiesterase 9A	protein coding gene	no	.	1.828	0.097	0.000	0.01(93)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MIR646HG_LS008	chr20:60100219|60101095:+	MIR646HG	MIR646 host gene	lncRNA gene	no	ENST00000428772.5;ENST00000439507.5;ENST00000457508.1	0.448	0.105	0.719	0.018(174)	0.007(5)	0.057(983)	non tumor-specific	nAS	yes
UN_AC011472.4_UP_LS0002	chr19:11197717|11216137:+	AC011472.4	-	lncRNA gene	no	.	0.930	0.831	0.000	0.004(39)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_PTPRN_LS0011	chr2:219299128|219299626:+	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	.	2.250	0.266	0.000	0.054(519)	0.001(1)	0(0)	non tumor-specific	nAS	no
IRAK1_LS022	chrX:154017067|154018006:-	IRAK1	interleukin 1 receptor associated kinase 1	protein coding gene	no	ENST00000369980.7;ENST00000369974.6;ENST00000477274.1;ENST00000393687.6;ENST00000429936.6;ENST00000443220.1	90.430	42.905	69.961	0.992(9500)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LINC01123_LS001	chr2:109987190|109987561:+	LINC01123	long intergenic non-protein coding RNA 1123	lncRNA gene	no	ENST00000419296.1	2.547	1.635	1.757	0.419(4015)	0.481(338)	0.639(11102)	non tumor-specific	nAS	yes
NUMA1_LS027	chr11:72010854|72012895:-	NUMA1	nuclear mitotic apparatus protein 1	protein coding gene	no	ENST00000541584.5;ENST00000358965.10;ENST00000620566.4;ENST00000616538.4;ENST00000545721.1;ENST00000541584.5;ENST00000358965.10;ENST00000620566.4;ENST00000616538.4;ENST00000545721.1	37.959	27.600	53.180	0.984(9428)	0.98(688)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
ZMAT3_LS007	chr3:179067809|179071595:-	ZMAT3	zinc finger matrin-type 3	protein coding gene	no	ENST00000311417.6	1.062	0.909	1.984	0.78(7473)	0.887(623)	0.802(13941)	non tumor-specific	exon_skip	yes
UN_XPO4_LS0015	chr13:20800320|20800831:-	XPO4	exportin 4	protein coding gene	no	.	4.600	0.118	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
KCNMB2-AS1_LS013	chr3:178801934|178841545:-	KCNMB2-AS1	KCNMB2 antisense RNA 1	lncRNA gene	no	ENST00000451742.5	2.120	0.125	0.670	0.075(716)	0.003(2)	0.008(138)	non tumor-specific	nAS	yes
UN_LIMS2_LS0099	chr2:127674421|127674621:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	1.118	0.416	0.000	0.026(252)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
UN_NUTM2B-AS1_LS0022	chr10:79716631|79766271:-	NUTM2B-AS1	NUTM2B antisense RNA 1	lncRNA gene	no	.	5.527	0.173	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC1_LS014	chr5:160051183|160065277:+	TTC1	tetratricopeptide repeat domain 1	protein coding gene	no	.;.	6.667	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UNC5C_LS012	chr4:95242593|95244977:-	UNC5C	unc-5 netrin receptor C	protein coding gene	yes	ENST00000610318.4;ENST00000453304.5;ENST00000513796.5;ENST00000506749.5	3.908	2.215	2.182	0.254(2438)	0.526(369)	0.596(10359)	non tumor-specific	nAS	yes
UN_KRT73-AS1_UP_LS0409	chr12:52473599|52492856:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	19.442	10.327	0.000	0.017(161)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TTC23_LS0013	chr15:99139467|99146015:-	TTC23	tetratricopeptide repeat domain 23	protein coding gene	no	.	2.348	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PMM2_LS008	chr16:8801910|8804767:+	PMM2	phosphomannomutase 2	protein coding gene	no	ENST00000566983.5;ENST00000268261.8;ENST00000564030.5;ENST00000566604.5;ENST00000564069.1	32.134	15.510	16.465	0.986(9448)	0.994(698)	0.966(16785)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PRSS23_LS0061	chr11:86922098|86951208:-	PRSS23	serine protease 23	protein coding gene	no	.	3.244	1.673	0.000	0.014(132)	0.031(22)	0(0)	non tumor-specific	nAS	no
SNCB_LS011	chr5:176629965|176630280:-	SNCB	synuclein beta	protein coding gene	no	ENST00000310112.7;ENST00000614675.4	0.642	1.354	4.970	0.089(854)	0.007(5)	0.139(2416)	non tumor-specific	alt_3prime;exon_skip	yes
NMT2_LS003	chr10:15109215|15109702:-	NMT2	N-myristoyltransferase 2	protein coding gene	no	ENST00000378165.8;ENST00000378150.1	13.727	12.951	16.601	0.896(8580)	0.929(652)	0.975(16945)	non tumor-specific	exon_skip	yes
ZNF217_LS010	chr20:53583168|53597631:-	ZNF217	zinc finger protein 217	protein coding gene	yes	ENST00000540425.1	1.809	1.109	1.257	0.138(1322)	0.118(83)	0.269(4678)	non tumor-specific	exon_skip	yes
STK32B_LS001	chr4:5051915|5139905:+	STK32B	serine/threonine kinase 32B	protein coding gene	no	ENST00000282908.9;ENST00000512018.5	1.910	1.440	1.701	0.413(3953)	0.531(373)	0.666(11585)	non tumor-specific	alt_5prime;exon_skip	yes
POMT1_LS018	chr9:131509022|131509743:+	POMT1	protein O-mannosyltransferase 1	protein coding gene	no	ENST00000404875.6;ENST00000423007.5;ENST00000441334.5;ENST00000341012.11;ENST00000372228.7;ENST00000402686.7;ENST00000448212.5;ENST00000430619.1;ENST00000462375.5	16.151	12.293	19.861	0.98(9391)	0.993(697)	0.978(17006)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PCBP4_LS0043	chr3:51962077|51962810:-	PCBP4	poly(rC) binding protein 4	protein coding gene	no	.	1.998	0.019	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLPP_LS004	chr19:6362542|6364452:+	CLPP	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein coding gene	no	ENST00000245816.9;ENST00000596070.1;ENST00000594780.1;ENST00000596149.5	184.832	93.293	110.364	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC016710.1_LS0003	chr2:139469854|139475769:+	AC016710.1	-	lncRNA gene	no	.	2.452	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01605_LS008	chr8:37476012|37529097:-	LINC01605	long intergenic non-protein coding RNA 1605	lncRNA gene	no	ENST00000519738.5;ENST00000517363.1	0.526	0.136	0.725	0.127(1217)	0.066(46)	0.097(1684)	non tumor-specific	nAS	yes
MCAT_LS010	chr22:43137298|43141162:-	MCAT	malonyl-CoA-acyl carrier protein transacylase	protein coding gene	no	ENST00000290429.10;ENST00000290429.10	44.024	28.076	12.688	0.994(9525)	0.997(700)	0.975(16945)	non tumor-specific	alt_5prime;exon_skip	yes
REV1_LS032	chr2:99451501|99462496:-	REV1	REV1 DNA directed polymerase	protein coding gene	no	ENST00000413697.5	0.098	0.157	1.409	0.616(5906)	0.758(532)	0.7(12167)	non tumor-specific	exon_skip	yes
AL139125.1_LS003	chr10:7469593|7471911:-	AL139125.1	-	lncRNA gene	no	ENST00000420395.1	0.197	0.000	0.670	0.007(63)	0(0)	0.017(303)	non tumor-specific	nAS	yes
UN_UBTF_LS0038	chr17:44209731|44210124:-	UBTF	upstream binding transcription factor	protein coding gene	no	.	24.594	13.204	0.000	0.011(101)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SPAG5-AS1_LS002	chr17:28599839|28606296:+	SPAG5-AS1	SPAG5 antisense RNA 1	lncRNA gene	no	ENST00000556050.1	0.297	0.053	0.665	0.018(172)	0.026(18)	0.044(760)	non tumor-specific	nAS	yes
UN_KIAA1671_LS0062	chr22:25110997|25111719:-	KIAA1671	KIAA1671	protein coding gene	no	.	0.869	1.052	0.000	0.006(56)	0.044(31)	0(0)	non tumor-specific	nAS	no
MRPS27_LS025	chr5:72297702|72320181:-	MRPS27	mitochondrial ribosomal protein S27	protein coding gene	no	ENST00000508863.6;ENST00000508863.6	0.136	0.069	0.663	0.506(4852)	0.557(391)	0.053(928)	non tumor-specific	alt_5prime;exon_skip	yes
NCKIPSD_LS007	chr3:48679183|48679377:-	NCKIPSD	NCK interacting protein with SH3 domain	protein coding gene	no	ENST00000416649.6;ENST00000294129.6;ENST00000470006.1	42.219	25.591	29.816	0.993(9516)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MARK3_LS0020	chr14:103428127|103428387:+	MARK3	microtubule affinity regulating kinase 3	protein coding gene	no	.	1.936	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEBPB-AS1_LS0009	chr20:50188627|50189446:-	CEBPB-AS1	CEBPB antisense RNA 1	lncRNA gene	no	.	1.159	0.390	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PCBD2_LS0117	chr5:134927221|134967426:+	PCBD2	pterin-4 alpha-carbinolamine dehydratase 2	protein coding gene	no	.	3.099	0.030	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CPNE1_LS033	chr20:35632923|35655202:-	CPNE1	copine 1	protein coding gene	no	ENST00000352393.8;ENST00000440240.5;ENST00000437100.5;ENST00000414711.5	0.505	0.858	12.108	0.915(8765)	0.942(661)	0.975(16954)	non tumor-specific	exon_skip	yes
UN_KATNAL1_LS0009	chr13:30210442|30210866:-	KATNAL1	katanin catalytic subunit A1 like 1	protein coding gene	no	.	3.283	1.056	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
RUNX2_LS009	chr6:45422957|45431863:+	RUNX2	RUNX family transcription factor 2	protein coding gene	yes	ENST00000371432.7;ENST00000465038.6;ENST00000647337.1;ENST00000371438.5;ENST00000371436.10;ENST00000576263.5;ENST00000478660.6;ENST00000646519.1;ENST00000359524.7;ENST00000625924.1	3.244	0.816	2.107	0.575(5506)	0.526(369)	0.723(12568)	non tumor-specific	exon_skip	yes
CEACAM20_LS012	chr19:44522912|44523986:-	CEACAM20	CEA cell adhesion molecule 20	protein coding gene	no	ENST00000621342.4;ENST00000620096.4;ENST00000614577.4;ENST00000614924.4;ENST00000611497.4;ENST00000617951.1	5.093	14.354	0.838	0.05(475)	0.064(45)	0.041(721)	non tumor-specific	nAS	yes
MGAT4B_LS022	chr5:179799250|179799954:-	MGAT4B	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B	protein coding gene	no	ENST00000518980.5;ENST00000523382.5;ENST00000518980.5;ENST00000523382.5	0.412	0.284	0.749	0.866(8298)	0.708(497)	0.179(3118)	non tumor-specific	alt_5prime;exon_skip	yes
UN_REM1_LS0002	chr20:31476785|31477804:+	REM1	RRAD and GEM like GTPase 1	protein coding gene	no	.	3.711	0.886	0.000	0.015(141)	0.028(20)	0(0)	non tumor-specific	nAS	no
ADAM32_LS040	chr8:39275866|39283586:+	ADAM32	ADAM metallopeptidase domain 32	protein coding gene	no	ENST00000524303.5	0.361	0.220	0.742	0.218(2091)	0.144(101)	0.167(2909)	non tumor-specific	exon_skip	yes
TMEM63C_LS012	chr14:77225461|77231588:+	TMEM63C	transmembrane protein 63C	protein coding gene	no	ENST00000554766.5;ENST00000298351.4	3.780	1.896	2.801	0.333(3195)	0.293(206)	0.476(8274)	non tumor-specific	nAS	yes
UN_LHFPL3_LS0054	chr7:104752803|104799818:-	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	.	15.504	0.000	0.000	0.023(220)	0(0)	0(0)	non tumor-specific	nAS	no
XRCC2_LS001	chr7:152649363|152660701:-	XRCC2	X-ray repair cross complementing 2	protein coding gene	no	ENST00000495707.1;ENST00000359321.1	4.688	0.570	0.964	0.66(6322)	0.328(230)	0.382(6641)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WBP11_LS0052	chr12:14789067|14790531:+	WBP11	WW domain binding protein 11	protein coding gene	no	.	2.077	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A8_LS0008	chr3:125084420|125088310:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	.	5.694	0.856	0.000	0.02(192)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_PMS2P1_LS0010	chr7:100329019|100330235:-	PMS2P1	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudogene	no	.	10.959	0.368	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
ALG12_LS010	chr22:49913517|49913604:-	ALG12	ALG12 alpha-1,6-mannosyltransferase	protein coding gene	no	ENST00000330817.10	41.549	28.506	20.097	0.984(9426)	0.994(698)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HERC6_UP_LS0014	chr4:88361843|88362050:+	HERC6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein coding gene	no	.	1.747	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TYROBP_LS0001	chr19:35904537|35907486:+	TYROBP	transmembrane immune signaling adaptor TYROBP	protein coding gene	no	.	11.444	7.036	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
MIOS_LS015	chr7:7568123|7572436:+	MIOS	meiosis regulator for oocyte development	protein coding gene	no	ENST00000340080.8;ENST00000405785.5;ENST00000433056.5;ENST00000445169.1	9.176	5.188	8.316	0.975(9341)	0.989(694)	0.965(16770)	non tumor-specific	exon_skip	yes
UN_UBE2Z_LS0058	chr17:48928550|48928617:+	UBE2Z	ubiquitin conjugating enzyme E2 Z	protein coding gene	no	.	21.172	3.577	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
SLC9A3R2_LS013	chr16:2037600|2037826:+	SLC9A3R2	SLC9A3 regulator 2	protein coding gene	no	ENST00000424542.6;ENST00000563587.5;ENST00000565855.5;ENST00000566198.1;ENST00000564033.1	181.543	197.456	169.847	0.996(9539)	0.997(700)	0.977(16977)	non tumor-specific	alt_3prime	yes
SEPT2_LS032	chr2:241320287|241324216:+	SEPT2	septin 6	protein coding gene	no	ENST00000445030.5;ENST00000434955.5;ENST00000402092.6	0.203	0.399	1.231	0.645(6177)	0.736(517)	0.603(10480)	non tumor-specific	exon_skip;mutex_exons	yes
RPS6KA6_LS007	chrX:84104657|84105787:-	RPS6KA6	ribosomal protein S6 kinase A6	protein coding gene	yes	ENST00000620340.4;ENST00000262752.4;ENST00000495332.1	4.050	4.000	2.634	0.405(3876)	0.681(478)	0.771(13409)	non tumor-specific	nAS	yes
EPB41_LS007	chr1:28987905|28997215:+	EPB41	erythrocyte membrane protein band 4.1	protein coding gene	yes	ENST00000644780.1	1.308	0.119	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip	yes
UN_MT-CO1_LS0118	chrM:7376|7405:-	MT-CO1	mitochondrially encoded cytochrome c oxidase I	protein coding gene	no	.	773.023	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SUPT20H_LS003	chr13:37009809|37010552:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000484078.5;ENST00000490716.5;ENST00000472948.1;ENST00000469488.6;ENST00000350612.10	17.976	6.347	19.661	0.964(9237)	0.957(672)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC12A6_LS039	chr15:34336752|34337961:-	SLC12A6	solute carrier family 12 member 6	protein coding gene	no	ENST00000559236.5	0.047	0.017	0.653	0.178(1705)	0.254(178)	0.012(200)	non tumor-specific	alt_3prime;intron_retention	yes
KLHL4_LS003	chrX:87614570|87617932:+	KLHL4	kelch like family member 4	protein coding gene	no	ENST00000373119.8;ENST00000373114.4	5.433	4.968	1.793	0.235(2252)	0.486(341)	0.546(9483)	non tumor-specific	nAS	yes
MDM1_LS018	chr12:68321446|68321525:-	MDM1	Mdm1 nuclear protein	protein coding gene	no	ENST00000540418.5;ENST00000303145.11;ENST00000411698.6;ENST00000538454.2	5.961	3.512	5.693	0.918(8795)	0.937(658)	0.956(16616)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZMIZ2_LS0044	chr7:44764486|44764945:+	ZMIZ2	zinc finger MIZ-type containing 2	protein coding gene	no	.	4.598	0.395	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_CNOT7_LS0033	chr8:17245931|17246231:-	CNOT7	CCR4-NOT transcription complex subunit 7	protein coding gene	no	.	0.836	0.006	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NIPSNAP2_LS013	chr7:55978395|55981473:+	NIPSNAP2	nipsnap homolog 2	protein coding gene	no	ENST00000446692.5;ENST00000322090.7;ENST00000437587.5;ENST00000472404.1;ENST00000446692.5;ENST00000322090.7;ENST00000437587.5;ENST00000472404.1	52.823	37.692	57.717	0.985(9440)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
KIF12_LS032	chr9:114096478|114097301:-	KIF12	kinesin family member 12	protein coding gene	no	ENST00000640553.1;ENST00000639832.1;ENST00000640217.1;ENST00000374118.8;ENST00000468460.2	24.444	34.676	3.429	0.591(5665)	0.799(561)	0.502(8719)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMCC3_LS0025	chr12:94582538|94644716:-	TMCC3	transmembrane and coiled-coil domain family 3	protein coding gene	no	.	1.183	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL592429.2_LS0002	chr6:139286902|139301512:+	AL592429.2	-	lncRNA gene	no	.	3.246	1.142	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
AOX3P_LS001	chr2:200696011|200699931:+	AOX3P	aldehyde oxidase 3, pseudogene	pseudogene	no	ENST00000467633.1	0.336	0.084	0.791	0.034(326)	0.02(14)	0.183(3182)	non tumor-specific	nAS	yes
ITSN1_LS028	chr21:33781548|33781994:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000399353.5;ENST00000381318.7;ENST00000381291.8;ENST00000381285.8;ENST00000399367.7;ENST00000399352.5;ENST00000399355.6;ENST00000399349.5;ENST00000399338.8;ENST00000379960.9	12.858	10.922	22.064	0.933(8937)	0.986(692)	0.974(16936)	non tumor-specific	exon_skip	yes
UN_PFKFB3_LS0041	chr10:6233530|6233555:+	PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein coding gene	no	.	17.409	5.241	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMC6_LS046	chr17:78126648|78128612:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	ENST00000589553.5;ENST00000586697.5;ENST00000589553.5;ENST00000586697.5	0.035	0.054	0.772	0.739(7077)	0.67(470)	0.215(3744)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EP400_LS013	chr12:131981596|131982093:+	EP400	E1A binding protein p400	protein coding gene	no	ENST00000389561.6;ENST00000333577.8;ENST00000389562.6	2.709	1.489	1.655	0.63(6037)	0.715(502)	0.726(12620)	non tumor-specific	exon_skip;intron_retention	yes
UN_SLC25A37_LS0028	chr8:23571896|23571958:-	SLC25A37	solute carrier family 25 member 37	protein coding gene	no	.	4.919	0.191	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02588_LS0043	chr14:26731156|26779795:+	LINC02588	long intergenic non-protein coding RNA 2588	lncRNA gene	no	.	3.299	0.143	0.000	0.028(265)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP006748.1_LS0002	chr21:41576665|41581265:-	AP006748.1	-	lncRNA gene	no	.	3.085	0.395	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC093843.1_LS001	chr2:220791156|220797461:+	AC093843.1	-	lncRNA gene	no	ENST00000424395.1	0.203	0.050	0.860	0.04(380)	0.043(30)	0.043(740)	non tumor-specific	nAS	yes
ROBO3_LS019	chr11:124876738|124877161:+	ROBO3	roundabout guidance receptor 3	protein coding gene	no	ENST00000531545.5	0.118	0.033	0.642	0.111(1064)	0.108(76)	0.007(118)	non tumor-specific	alt_5prime;intron_retention	yes
UN_OFD1_LS0032	chrX:13766069|13767127:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	.	4.710	1.351	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DAPK3_LS008	chr19:3964373|3964631:-	DAPK3	death associated protein kinase 3	protein coding gene	yes	ENST00000545797.6;ENST00000301264.7;ENST00000596311.5;ENST00000601824.1	124.093	85.266	98.064	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
CLUHP3_LS006	chr16:31703363|31704155:+	CLUHP3	clustered mitochondria homolog pseudogene 3	pseudogene	no	ENST00000563678.1	3.140	0.000	0.715	0(3)	0(0)	0.034(593)	non tumor-specific	nAS	yes
PIEZO2_LS024	chr18:10715816|10718200:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	ENST00000302079.10;ENST00000383408.6;ENST00000580640.5;ENST00000503781.7;ENST00000582913.5	5.898	2.847	1.728	0.357(3419)	0.457(321)	0.578(10047)	non tumor-specific	nAS	yes
APBB3_LS004	chr5:140560754|140561018:-	APBB3	amyloid beta precursor protein binding family B member 3	protein coding gene	no	ENST00000515056.5;ENST00000509914.5;ENST00000510241.5;ENST00000467078.5;ENST00000356738.6;ENST00000354402.9;ENST00000357560.8;ENST00000511896.5;ENST00000412920.7;ENST00000504872.5;ENST00000506289.5	26.203	12.396	52.610	0.966(9255)	0.976(685)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TAF1C_LS011	chr16:84181463|84181746:-	TAF1C	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein coding gene	no	.;.;.	0.872	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLK_LS016	chr10:104008356|104018160:+	SLK	STE20 like kinase	protein coding gene	no	ENST00000335753.8;ENST00000474260.1	30.380	24.901	27.776	0.966(9260)	0.986(692)	0.977(16982)	non tumor-specific	exon_skip	yes
CSF1R_LS012	chr5:150060972|150061491:-	CSF1R	colony stimulating factor 1 receptor	protein coding gene	yes	ENST00000504875.5;ENST00000286301.7;ENST00000515239.5;ENST00000513609.1	54.187	38.037	19.318	0.942(9026)	0.986(692)	0.957(16635)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM8_LS018	chr10:133271289|133271528:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7;ENST00000485491.6	16.203	4.689	4.345	0.856(8205)	0.768(539)	0.926(16101)	non tumor-specific	nAS	yes
PRKAA2_LS006	chr1:56693852|56695935:+	PRKAA2	protein kinase AMP-activated catalytic subunit alpha 2	protein coding gene	yes	ENST00000371244.8;ENST00000610361.1	5.192	7.084	2.649	0.499(4785)	0.707(496)	0.766(13316)	non tumor-specific	nAS	yes
MYO5C_LS030	chr15:52246042|52246917:-	MYO5C	myosin VC	protein coding gene	no	ENST00000261839.11;ENST00000560809.5;ENST00000558902.5	9.728	10.056	4.107	0.713(6829)	0.877(616)	0.799(13887)	non tumor-specific	exon_skip	yes
SARS2_LS016	chr19:38921596|38922002:-	SARS2	seryl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000600042.5	0.072	0.060	0.671	0.161(1542)	0.118(83)	0.111(1929)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
VANGL1_LS006	chr1:115659767|115663661:+	VANGL1	VANGL planar cell polarity protein 1	protein coding gene	no	ENST00000369510.8	3.136	2.005	0.617	0.194(1861)	0.201(141)	0.037(650)	non tumor-specific	alt_5prime	yes
UN_LINC01060_LS0018	chr4:188434965|188455438:-	LINC01060	long intergenic non-protein coding RNA 1060	lncRNA gene	no	.	1.894	2.166	0.000	0.014(134)	0.063(44)	0(0)	non tumor-specific	nAS	no
KIAA1614_LS005	chr1:180928573|180935115:+	KIAA1614	KIAA1614	protein coding gene	no	ENST00000367588.8;ENST00000367587.1	2.445	2.408	4.209	0.56(5363)	0.761(534)	0.846(14698)	non tumor-specific	exon_skip	yes
UN_CNOT8_LS0006	chr5:154858768|154863212:+	CNOT8	CCR4-NOT transcription complex subunit 8	protein coding gene	no	.	8.430	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NOP14-AS1_LS001	chr4:2935735|2937752:+	NOP14-AS1	NOP14 antisense RNA 1	lncRNA gene	no	ENST00000505731.5;ENST00000507999.5	0.701	0.386	2.128	0.828(7929)	0.905(635)	0.831(14448)	non tumor-specific	nAS	yes
UN_SORCS2_LS0038	chr4:7531629|7582200:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	.	2.227	0.154	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ANKRD37_LS009	chr4:185397310|185398947:+	ANKRD37	ankyrin repeat domain 37	protein coding gene	no	.;.	9.861	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_E2F4_LS0015	chr16:67198066|67198118:-	E2F4	E2F transcription factor 4	protein coding gene	no	.	3.864	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SMG1P2_LS015	chr16:29541430|29541580:-	SMG1P2	SMG1 pseudogene 2	pseudogene	no	ENST00000566127.1	1.748	0.433	0.728	0.117(1117)	0.063(44)	0.003(50)	non tumor-specific	nAS	yes
KPTN_LS003	chr19:47476714|47476803:-	KPTN	kaptin, actin binding protein	protein coding gene	no	ENST00000338134.7;ENST00000594208.5	21.658	8.372	17.618	0.989(9479)	0.993(697)	0.979(17015)	non tumor-specific	exon_skip	yes
ABCC9_LS041	chr12:21926063|21933782:-	ABCC9	ATP binding cassette subfamily C member 9	protein coding gene	no	ENST00000261200.8;ENST00000261201.8;ENST00000326684.8;ENST00000538350.5;ENST00000636888.1;ENST00000621589.1	3.704	4.014	6.214	0.424(4062)	0.795(558)	0.847(14716)	non tumor-specific	nAS	yes
LMO3_LS006	chr12:16560538|16600655:-	LMO3	LIM domain only 3	protein coding gene	yes	ENST00000261169.10;ENST00000541295.5;ENST00000354662.5;ENST00000441439.6;ENST00000447609.5;ENST00000320122.10;ENST00000540848.5;ENST00000535535.5;ENST00000537304.5;ENST00000534946.5;ENST00000541846.5;ENST00000539534.5;ENST00000546281.5;ENST00000537757.5;ENST00000546279.5;ENST00000538051.5;ENST00000545436.5;ENST00000540590.1;ENST00000261169.10;ENST00000541295.5;ENST00000354662.5;ENST00000441439.6;ENST00000447609.5;ENST00000320122.10;ENST00000540848.5;ENST00000535535.5;ENST00000537304.5;ENST00000534946.5;ENST00000541846.5;ENST00000539534.5;ENST00000546281.5;ENST00000537757.5;ENST00000546279.5;ENST00000538051.5;ENST00000545436.5;ENST00000540590.1	5.821	10.812	11.390	0.496(4748)	0.829(582)	0.841(14613)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PPFIBP1_LS0025	chr12:27635115|27636334:+	PPFIBP1	PPFIA binding protein 1	protein coding gene	no	.	1.452	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01927_LS004	chr18:76638688|76638785:-	LINC01927	long intergenic non-protein coding RNA 1927	lncRNA gene	no	ENST00000582231.1	0.995	0.295	0.934	0.004(42)	0.023(16)	0.022(380)	non tumor-specific	nAS	yes
UN_TRIM56_LS0033	chr7:101088613|101088784:-	TRIM56	tripartite motif containing 56	protein coding gene	no	.	1.048	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP565260.5_UP_LS0002	chr21:5054735|5054768:+	FP565260.5	-	lncRNA gene	no	.	1.506	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
IFT122_LS029	chr3:129464781|129466890:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000431818.6;ENST00000296266.7;ENST00000512220.5;ENST00000348417.6	0.120	0.200	1.061	0.296(2834)	0.419(294)	0.536(9322)	non tumor-specific	exon_skip	yes
MARCO_LS011	chr2:118977515|118977828:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	ENST00000327097.4	13.282	62.713	4.682	0.572(5485)	0.685(481)	0.754(13102)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JAGN1_LS0009	chr3:9891845|9892915:+	JAGN1	jagunal homolog 1	protein coding gene	no	.	5.787	1.046	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
ATP8B2_LS027	chr1:154344785|154344971:+	ATP8B2	ATPase phospholipid transporting 8B2	protein coding gene	no	ENST00000368489.3	29.902	18.033	30.243	0.925(8859)	0.967(679)	0.977(16983)	non tumor-specific	alt_3prime;intron_retention	yes
UN_NPIPB11_LS0035	chr16:29381812|29383967:+	NPIPB11	nuclear pore complex interacting protein family member B11	protein coding gene	no	.	3.563	0.841	0.000	0.019(180)	0.003(2)	0(0)	non tumor-specific	nAS	no
FRG1HP_LS004	chr9:40992775|40994633:+	FRG1HP	FSHD region gene 1 family member H, pseudogene	pseudogene	no	ENST00000611606.4	0.317	0.341	4.248	0.897(8590)	0.905(635)	0.939(16325)	non tumor-specific	nAS	yes
UN_DNAJA2_LS0008	chr16:46960306|46964611:-	DNAJA2	DnaJ heat shock protein family (Hsp40) member A2	protein coding gene	no	.	2.597	0.494	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PPP4R3B_LS0047	chr2:55604076|55615383:-	PPP4R3B	protein phosphatase 4 regulatory subunit 3B	protein coding gene	no	.	2.060	0.450	0.000	0.016(157)	0.021(15)	0(0)	non tumor-specific	alt_5prime	no
LRCH3_LS023	chr3:197858905|197870160:+	LRCH3	leucine rich repeats and calponin homology domain containing 3	protein coding gene	no	ENST00000473177.1	0.023	0.012	0.894	0.222(2126)	0.189(133)	0.078(1349)	non tumor-specific	exon_skip	yes
UN_ST5_LS0010	chr11:8693722|8693834:+	ST5	DENN domain containing 2B	protein coding gene	yes	.	3.764	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012531.2_LS0010	chr12:54017414|54033353:+	AC012531.2	-	protein coding gene	no	.	0.757	0.091	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACACA_LS004	chr17:37097166|37097830:-	ACACA	acetyl-CoA carboxylase alpha	protein coding gene	no	ENST00000616317.4;ENST00000612895.4;ENST00000614428.4;ENST00000619546.4;ENST00000617649.4;ENST00000614482.4;ENST00000613776.1	15.108	8.437	17.166	0.986(9448)	0.994(698)	0.97(16867)	non tumor-specific	nAS	yes
PLEKHA7_LS028	chr11:16803295|16812403:-	PLEKHA7	pleckstrin homology domain containing A7	protein coding gene	no	ENST00000525581.2	0.006	0.032	0.642	0.418(4001)	0.583(409)	0.002(32)	non tumor-specific	nAS	yes
UN_PLEC_LS0672	chr8:143925296|143925477:-	PLEC	plectin	protein coding gene	no	.	8.744	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC008966.1_LS0001	chr5:53110405|53112240:+	AC008966.1	-	lncRNA gene	no	.	1.941	0.522	0.000	0.013(124)	0.031(22)	0(0)	non tumor-specific	nAS	no
MCC_LS022	chr5:113101945|113104192:-	MCC	MCC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000302475.8;ENST00000515367.6;ENST00000408903.6;ENST00000514701.5;ENST00000502648.5;ENST00000505604.1;ENST00000506605.6;ENST00000511847.2	7.165	7.106	4.839	0.829(7945)	0.946(664)	0.888(15443)	non tumor-specific	exon_skip	yes
FIP1L1_LS019	chr4:53428183|53440582:+	FIP1L1	factor interacting with PAPOLA and CPSF1	protein coding gene	yes	ENST00000358575.9;ENST00000513975.5;ENST00000514543.5;ENST00000504094.1	29.935	17.527	25.704	0.987(9460)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_UHRF1_UP_LS0002	chr19:4838816|4873441:+	UHRF1	ubiquitin like with PHD and ring finger domains 1	protein coding gene	yes	.	1.009	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MLF2_LS017	chr12:6752362|6752643:-	MLF2	myeloid leukemia factor 2	protein coding gene	no	ENST00000540710.5	0.123	0.056	0.859	0.199(1909)	0.147(103)	0.104(1809)	non tumor-specific	alt_5prime;intron_retention	yes
FAM86EP_LS005	chr4:3943372|3953111:-	FAM86EP	family with sequence similarity 86 member E, pseudogene	pseudogene	no	ENST00000507301.5	0.146	0.047	1.448	0.752(7205)	0.792(556)	0.723(12563)	non tumor-specific	nAS	yes
UN_TLN2_LS0092	chr15:62835177|62835480:-	TLN2	talin 2	protein coding gene	no	.	1.127	0.472	0.000	0.004(36)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_MINDY4_LS0017	chr7:30817567|30828679:+	MINDY4	MINDY lysine 48 deubiquitinase 4	protein coding gene	no	.	1.478	0.168	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010768.2_UP_LS0004	chr11:44620360|44636295:-	AC010768.2	-	lncRNA gene	no	.	2.915	0.187	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0602	chr21:8216684|8260749:+	FP236383.1	-	lncRNA gene	no	.	177.732	7.571	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLD2_LS005	chr17:4808114|4808274:+	PLD2	phospholipase D2	protein coding gene	no	ENST00000263088.10;ENST00000572940.5;ENST00000575246.6;ENST00000575316.1	15.160	10.829	16.195	0.942(9030)	0.977(686)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RPS21_LS003	chr20:62387136|62387321:+	RPS21	ribosomal protein S21	protein coding gene	no	ENST00000343986.8;ENST00000492356.2;ENST00000343986.8;ENST00000492356.2	2837.656	1161.014	1019.938	0.866(8299)	0.885(621)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
SRP19_LS009	chr5:112864528|112891603:+	SRP19	signal recognition particle 19	protein coding gene	no	ENST00000506997.2	0.326	0.144	0.815	0.033(312)	0.021(15)	0.278(4827)	non tumor-specific	nAS	yes
NLRC5_LS040	chr16:57046641|57047545:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	ENST00000539881.5;ENST00000262510.10;ENST00000436936.5;ENST00000539144.5;ENST00000538805.5;ENST00000545081.5;ENST00000538453.5;ENST00000540182.5;ENST00000538930.5;ENST00000537056.5;ENST00000534931.1	18.854	6.481	10.696	0.975(9342)	0.96(674)	0.959(16672)	non tumor-specific	exon_skip	yes
AZIN2_LS017	chr1:33082354|33083954:+	AZIN2	antizyme inhibitor 2	protein coding gene	no	ENST00000294517.10;ENST00000462920.5;ENST00000373443.7;ENST00000373440.5;ENST00000373441.1;ENST00000294517.10;ENST00000462920.5;ENST00000373443.7;ENST00000373440.5;ENST00000373441.1	3.739	3.262	3.892	0.794(7606)	0.846(594)	0.893(15519)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CCDC186_LS019	chr10:114173265|114174015:-	CCDC186	coiled-coil domain containing 186	protein coding gene	no	ENST00000648613.1;ENST00000369285.7	0.278	0.884	1.304	0.606(5808)	0.813(571)	0.657(11412)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PSMC1P11_UP_LS0010	chr6:4636166|4636621:+	PSMC1P11	proteasome 26S subunit, ATPase 1 pseudogene 11	pseudogene	no	.	3.734	0.497	0.000	0.02(196)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGB1BP1_LS016	chr2:9414256|9423373:-	ITGB1BP1	integrin subunit beta 1 binding protein 1	protein coding gene	no	ENST00000463190.1	0.059	0.126	3.691	0.83(7950)	0.856(601)	0.932(16199)	non tumor-specific	exon_skip	yes
KIR2DL4_LS013	chr19:54813742|54813842:+	KIR2DL4	killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4	protein coding gene	no	ENST00000396284.6;ENST00000359085.8;ENST00000345540.9;ENST00000357494.8;ENST00000463062.1;ENST00000396293.5;ENST00000346587.8;ENST00000396289.5	2.447	0.768	1.203	0.171(1642)	0.115(81)	0.281(4878)	non tumor-specific	nAS	yes
DDR2_LS014	chr1:162766063|162767229:+	DDR2	discoidin domain receptor tyrosine kinase 2	protein coding gene	yes	ENST00000446985.6;ENST00000367922.7;ENST00000367921.7	9.312	11.169	13.608	0.598(5734)	0.86(604)	0.921(16006)	non tumor-specific	exon_skip	yes
UN_MTUS1_LS0065	chr8:17755961|17758015:-	MTUS1	microtubule associated scaffold protein 1	protein coding gene	yes	.	1.205	0.434	0.000	0.008(76)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TNRC18_LS038	chr7:5390628|5394440:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2;ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2;ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2	20.325	12.871	15.958	0.839(8034)	0.913(641)	0.972(16903)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF84_LS0029	chr12:133057611|133057780:-	ZNF84	zinc finger protein 84	protein coding gene	no	.	2.243	0.268	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL13P12_UP_LS0001	chr17:17384032|17611155:-	RPL13P12	ribosomal protein L13 pseudogene 12	pseudogene	no	.	2.757	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM88_LS0002	chr17:7855284|7855403:+	TMEM88	transmembrane protein 88	protein coding gene	no	.	3.087	1.641	0.000	0.032(311)	0.073(51)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_TRAJ39_UP_LS0002	chr14:22053060|22499699:+	TRAJ39	T cell receptor alpha joining 39	no	no	.	1.291	0.286	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYH8_LS035	chr17:10415708|10418645:-	MYH8	myosin heavy chain 8	protein coding gene	no	ENST00000403437.2	6.118	1.032	2.031	0.012(118)	0.021(15)	0.044(757)	non tumor-specific	nAS	yes
UN_MDN1_LS0099	chr6:89730923|89732702:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	.	1.944	0.037	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
FRA10AC1_LS024	chr10:93694937|93698136:-	FRA10AC1	FRA10A associated CGG repeat 1	protein coding gene	no	ENST00000359204.4	49.168	34.176	41.968	0.993(9513)	0.997(700)	0.978(17006)	non tumor-specific	exon_skip	yes
UN_RIC8B_LS0035	chr12:106881646|106885421:-	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	.	1.945	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GSAP_LS0016	chr7:77329384|77330182:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	2.285	0.396	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ADGRV1_LS012	chr5:90635290|90637725:+	ADGRV1	adhesion G protein-coupled receptor V1	protein coding gene	no	ENST00000645211.1;ENST00000405460.8;ENST00000504142.2	4.587	0.127	1.033	0.045(433)	0.108(76)	0.119(2070)	non tumor-specific	nAS	yes
KLHL5_LS004	chr4:39063035|39075965:+	KLHL5	kelch like family member 5	protein coding gene	no	ENST00000261425.7;ENST00000504108.5;ENST00000381930.7	3.387	3.385	3.868	0.857(8215)	0.946(664)	0.892(15497)	non tumor-specific	exon_skip	yes
LINC01322_LS012	chr3:165647083|165654109:+	LINC01322	long intergenic non-protein coding RNA 1322	lncRNA gene	no	ENST00000496693.1	1.153	0.000	0.923	0.001(11)	0(0)	0.006(96)	non tumor-specific	nAS	yes
TLE1_LS021	chr9:81613521|81615982:-	TLE1	TLE family member 1, transcriptional corepressor	protein coding gene	yes	ENST00000376499.7;ENST00000491534.5	35.306	22.862	31.176	0.969(9286)	0.993(697)	0.977(16974)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPL29_UP_LS0007	chr3:52044880|52045327:-	RPL29	ribosomal protein L29	protein coding gene	no	.	1.871	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ATF1_LS017	chr12:50814439|50819635:+	ATF1	glial cell derived neurotrophic factor	protein coding gene	yes	ENST00000262053.7;ENST00000551831.5	31.446	21.918	35.595	0.923(8848)	0.919(645)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
JAK3_LS009	chr19:17834721|17834852:-	JAK3	Janus kinase 3	protein coding gene	no	ENST00000458235.5;ENST00000527670.5;ENST00000534444.1	12.062	2.806	5.765	0.716(6864)	0.651(457)	0.923(16039)	non tumor-specific	nAS	yes
UN_KPNA3_LS0005	chr13:49733046|49738707:-	KPNA3	karyopherin subunit alpha 3	protein coding gene	no	.	1.833	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AL035701.1_LS002	chr6:46102659|46122948:-	AL035701.1	-	lncRNA gene	no	ENST00000437249.2	0.702	0.300	0.948	0.158(1511)	0.268(188)	0.351(6098)	non tumor-specific	nAS	yes
SDAD1_LS022	chr4:75975995|75981372:-	SDAD1	SDA1 domain containing 1	protein coding gene	no	ENST00000395711.8	0.185	0.310	0.756	0.638(6108)	0.739(519)	0.245(4265)	non tumor-specific	exon_skip	yes
DYNC2H1_LS058	chr11:103215858|103219915:+	DYNC2H1	dynein cytoplasmic 2 heavy chain 1	protein coding gene	no	ENST00000375735.6;ENST00000649997.1;ENST00000650373.1;ENST00000398093.7	4.630	4.326	5.564	0.555(5314)	0.749(526)	0.885(15376)	non tumor-specific	nAS	yes
TRPV3_LS005	chr17:3518850|3520973:-	TRPV3	transient receptor potential cation channel subfamily V member 3	protein coding gene	no	ENST00000381913.8;ENST00000616411.4;ENST00000301365.8;ENST00000571139.5;ENST00000573539.5;ENST00000576742.5;ENST00000572519.1	1.913	0.649	1.882	0.19(1816)	0.12(84)	0.628(10919)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TUT1_LS0001	chr11:62575129|62576657:-	TUT1	terminal uridylyl transferase 1, U6 snRNA-specific	protein coding gene	no	.	3.864	1.212	0.000	0.051(488)	0.048(34)	0(0)	non tumor-specific	nAS	no
RASA4B_LS012	chr7:102489273|102493116:-	RASA4B	RAS p21 protein activator 4B	protein coding gene	no	ENST00000488284.6	0.112	0.145	1.023	0.261(2496)	0.268(188)	0.252(4380)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC01789_LS0020	chr2:107266708|107337256:-	LINC01789	long intergenic non-protein coding RNA 1789	lncRNA gene	no	.	2.325	1.138	0.000	0.01(96)	0.006(4)	0(0)	non tumor-specific	nAS	no
MRPL2_LS013	chr6:43058233|43059286:-	MRPL2	mitochondrial ribosomal protein L2	protein coding gene	no	ENST00000388752.7;ENST00000230413.9;ENST00000489623.1;ENST00000470667.5;ENST00000491898.5;ENST00000480286.1;ENST00000468957.1	33.758	23.198	69.224	0.99(9482)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PIAS3_LS015	chr1:145857006|145858967:-	PIAS3	protein inhibitor of activated STAT 3	protein coding gene	no	ENST00000369298.5;ENST00000393045.6;ENST00000484423.5;ENST00000498436.2	6.045	3.286	8.807	0.932(8931)	0.937(658)	0.966(16796)	non tumor-specific	nAS	yes
LMO3_LS045	chr12:16606132|16609734:-	LMO3	LIM domain only 3	protein coding gene	yes	ENST00000534946.5;ENST00000424192.6	0.028	0.025	0.832	0.169(1615)	0.369(259)	0.112(1953)	non tumor-specific	alt_3prime;exon_skip	yes
GUSBP2_LS006	chr6:26885443|26889010:-	GUSBP2	GUSB pseudogene 2	pseudogene	no	ENST00000479900.5;ENST00000463434.5	1.926	0.732	0.847	0.822(7879)	0.821(576)	0.385(6690)	non tumor-specific	nAS	yes
NSD3_LS024	chr8:38326856|38329378:-	NSD3	nuclear receptor binding SET domain protein 3	protein coding gene	no	ENST00000317025.12;ENST00000433384.6;ENST00000527502.5;ENST00000316985.7	53.157	33.550	34.752	0.975(9345)	0.993(697)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_BCAR1_LS0107	chr16:75242830|75242926:+	BCAR1	BCAR1 scaffold protein, Cas family member	protein coding gene	no	.	1.860	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC005070.1_UP_LS0001	chr7:105000255|105038126:+	AC005070.1	-	pseudogene	no	.	6.987	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XIAP_LS0013	chrX:123877946|123910841:-	XIAP	X-linked inhibitor of apoptosis	protein coding gene	yes	.	4.707	0.136	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRE11_LS004	chr11:94437235|94445810:-	MRE11	MRE11 homolog, double strand break repair nuclease	protein coding gene	no	ENST00000323929.7;ENST00000407439.7;ENST00000393241.8	25.221	9.594	14.493	0.971(9303)	0.977(686)	0.977(16990)	non tumor-specific	exon_skip	yes
AFDN-DT_LS002	chr6:167824806|167825403:-	AFDN-DT	AFDN divergent transcript	lncRNA gene	no	ENST00000359760.5	0.794	0.529	2.333	0.715(6848)	0.822(577)	0.686(11920)	non tumor-specific	nAS	yes
HEMGN_LS003	chr9:97936264|97938058:-	HEMGN	hemogen	protein coding gene	no	ENST00000616898.1;ENST00000259456.7	1.531	0.350	1.259	0.033(312)	0.038(27)	0.165(2872)	non tumor-specific	nAS	yes
B3GALT5_LS001	chr21:39556510|39562954:+	B3GALT5	beta-1,3-galactosyltransferase 5	protein coding gene	no	ENST00000475838.1	0.194	0.026	0.825	0.023(222)	0.01(7)	0.014(239)	non tumor-specific	nAS	yes
MRPL48_LS027	chr11:73844976|73859907:+	MRPL48	mitochondrial ribosomal protein L48	protein coding gene	no	ENST00000310614.11;ENST00000508278.6;ENST00000540162.5;ENST00000544140.5;ENST00000544819.5;ENST00000411840.6;ENST00000398483.7;ENST00000314282.7	59.366	32.531	45.106	0.997(9550)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
PIP5K1A_LS011	chr1:151199187|151224245:+	PIP5K1A	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein coding gene	no	ENST00000454769.2;ENST00000454769.2	0.563	0.805	0.721	0.418(4009)	0.396(278)	0.25(4338)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PPP1R14BP2_UP_LS0016	chr2:207668224|207674950:+	PPP1R14BP2	protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 2	pseudogene	no	.	2.518	0.832	0.000	0.061(581)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_ATP5MC2P1_UP_LS0012	chr1:209328827|209407515:-	ATP5MC2P1	ATP synthase membrane subunit c locus 2 pseudogene 1	pseudogene	no	.	1.150	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
MCM8-AS1_LS002	chr20:6001397|6005773:-	MCM8-AS1	MCM8 antisense RNA 1	lncRNA gene	no	ENST00000613522.1	0.995	0.414	0.657	0.001(6)	0.007(5)	0.044(759)	non tumor-specific	nAS	yes
UN_RMDN3_LS0013	chr15:40744149|40745021:-	RMDN3	regulator of microtubule dynamics 3	protein coding gene	no	.	20.718	7.757	0.000	0.009(86)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
PTPRS_LS032	chr19:5229342|5229491:-	PTPRS	protein tyrosine phosphatase receptor type S	protein coding gene	no	ENST00000587303.5	1.253	0.112	1.348	0.053(504)	0.019(13)	0.344(5986)	non tumor-specific	exon_skip	yes
MYO9A_LS026	chr15:71893778|71897461:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000356056.9;ENST00000561618.5;ENST00000564571.5;ENST00000444904.5;ENST00000563542.5;ENST00000568781.1	6.207	7.544	5.653	0.822(7874)	0.885(621)	0.912(15857)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FIGNL2_UP_LS0005	chr12:51868438|51868946:-	FIGNL2	fidgetin like 2	protein coding gene	no	.	2.563	0.159	0.000	0.016(156)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_OTUD3_LS0003	chr1:19882734|19894368:+	OTUD3	OTU deubiquitinase 3	protein coding gene	no	.	0.592	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_UBXN7_LS0020	chr3:196368155|196371896:-	UBXN7	UBX domain protein 7	protein coding gene	no	.	1.533	0.088	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LINC00623_LS002	chr1:120913450|121001000:+	LINC00623	long intergenic non-protein coding RNA 623	lncRNA gene	no	ENST00000617702.1	0.183	0.057	0.689	0.542(5192)	0.55(386)	0.092(1606)	non tumor-specific	nAS	yes
UN_AC125388.1_UP_LS0002	chr19:53341322|53375770:+	AC125388.1	-	pseudogene	no	.	1.090	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
EHMT2-AS1_LS001	chr6:31878078|31880244:+	EHMT2-AS1	EHMT2 and SLC44A4 antisense RNA 1	lncRNA gene	no	ENST00000642849.1	1.763	0.595	0.000	0.022(215)	0.024(17)	0(0)	non tumor-specific	nAS	yes
UN_NDC1_LS0001	chr1:53768062|53772329:-	NDC1	NDC1 transmembrane nucleoporin	protein coding gene	no	.	7.382	0.519	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
DENND1B_LS005	chr1:197541015|197545922:-	DENND1B	DENN domain containing 1B	protein coding gene	no	ENST00000620048.5;ENST00000294737.11	2.913	1.853	2.600	0.756(7239)	0.863(606)	0.861(14973)	non tumor-specific	nAS	yes
UN_TFF3_LS0011	chr21:42312269|42315293:-	TFF3	trefoil factor 3	protein coding gene	no	.	2.606	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ROBO3_LS007	chr11:124871138|124872381:+	ROBO3	roundabout guidance receptor 3	protein coding gene	no	ENST00000397801.5;ENST00000538940.5	4.053	0.717	1.109	0.004(35)	0.001(1)	0.043(739)	non tumor-specific	nAS	yes
SMYD5_LS001	chr2:73214362|73218861:+	SMYD5	SMYD family member 5	protein coding gene	no	ENST00000413491.5;ENST00000389501.8;ENST00000258100.8;ENST00000629411.2	8.693	4.716	6.263	0.959(9191)	0.983(690)	0.96(16690)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAB4B-EGLN2_LS0014	chr19:40786933|40796608:+	RAB4B-EGLN2	RAB4B-EGLN2 readthrough (NMD candidate)	protein coding gene	no	.	17.758	2.334	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHRND_LS010	chr2:232528971|232529939:+	CHRND	cholinergic receptor nicotinic delta subunit	protein coding gene	no	ENST00000543200.5;ENST00000258385.7;ENST00000446616.1	4.859	1.426	7.012	0.029(274)	0.031(22)	0.089(1543)	non tumor-specific	exon_skip	yes
AC074351.1_LS002	chr7:54783225|54804666:+	AC074351.1	-	lncRNA gene	no	ENST00000439413.2	0.712	0.334	0.995	0.043(416)	0.01(7)	0.081(1411)	non tumor-specific	nAS	yes
UN_AL390334.1_LS0035	chr14:27566853|27613421:+	AL390334.1	-	pseudogene	no	.	3.195	0.586	0.000	0.008(81)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL110505.1_UP_LS0029	chr14:49543176|49546127:-	AL110505.1	-	lncRNA gene	no	.	4.211	1.064	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_SOX9-AS1_LS0027	chr17:72086775|72089048:-	SOX9-AS1	SOX9 antisense RNA 1	lncRNA gene	no	.	1.322	0.043	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL110503.1_LS001	chr20:24142966|24144230:-	AL110503.1	-	lncRNA gene	no	ENST00000457224.1	0.026	0.010	0.855	0(3)	0.003(2)	0(1)	non tumor-specific	nAS	yes
UN_JRK_LS0003	chr8:142658944|142669932:-	JRK	Jrk helix-turn-helix protein	protein coding gene	no	.	0.441	0.038	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
RGPD8_LS013	chr2:112401240|112401408:-	RGPD8	RANBP2 like and GRIP domain containing 8	protein coding gene	no	ENST00000302558.7;ENST00000409750.5;ENST00000330575.9	2.038	2.262	0.683	0.812(7778)	0.912(640)	0.112(1943)	non tumor-specific	alt_3prime;intron_retention	yes
UN_PTPRA_LS0064	chr20:3034961|3035585:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	2.601	0.148	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC119403.1_UP_LS0003	chr19:2927464|2936524:-	AC119403.1	-	lncRNA gene	no	.	2.879	0.491	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DNMBP_LS0019	chr10:99891878|99896120:+	DNMBP	dynamin binding protein	protein coding gene	no	.	5.156	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PPP1R16B_LS011	chr20:38906094|38906979:+	PPP1R16B	protein phosphatase 1 regulatory subunit 16B	protein coding gene	no	ENST00000299824.5	6.522	11.055	4.225	0.615(5896)	0.845(593)	0.851(14788)	non tumor-specific	exon_skip	yes
TMEM71_LS020	chr8:132758050|132758840:-	TMEM71	transmembrane protein 71	protein coding gene	no	ENST00000517538.1	0.187	0.012	0.741	0.026(249)	0.027(19)	0.052(903)	non tumor-specific	exon_skip	yes
PPT1_LS008	chr1:40078658|40080397:-	PPT1	palmitoyl-protein thioesterase 1	protein coding gene	no	ENST00000642050.1;ENST00000641471.1;ENST00000530076.6;ENST00000641083.1;ENST00000530704.6;ENST00000433473.8;ENST00000641319.1;ENST00000439754.6;ENST00000641236.1;ENST00000641691.1;ENST00000449045.7;ENST00000529905.5;ENST00000641924.1;ENST00000527311.7;ENST00000642050.1;ENST00000641471.1;ENST00000530076.6;ENST00000641083.1;ENST00000530704.6;ENST00000433473.8;ENST00000641319.1;ENST00000439754.6;ENST00000641236.1;ENST00000641691.1;ENST00000449045.7;ENST00000529905.5;ENST00000641924.1;ENST00000527311.7	202.710	136.167	75.291	0.997(9552)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BBS2_UP_LS0013	chr16:56609043|56618231:-	BBS2	Bardet-Biedl syndrome 2	protein coding gene	no	.	21.195	11.848	0.000	0.014(137)	0.067(47)	0(0)	non tumor-specific	nAS	no
DZIP3_LS027	chr3:108662257|108669681:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	ENST00000361582.7;ENST00000495008.5;ENST00000463306.1	17.651	15.125	12.052	0.921(8820)	0.966(678)	0.967(16801)	non tumor-specific	exon_skip	yes
UN_SLC7A9_LS0004	chr19:32859964|32860297:-	SLC7A9	solute carrier family 7 member 9	protein coding gene	no	.	1.504	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_MANBAL_LS0032	chr20:37316423|37316522:+	MANBAL	mannosidase beta like	protein coding gene	no	.	13.723	0.847	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
GRSF1_LS003	chr4:70824368|70825296:-	GRSF1	G-rich RNA sequence binding factor 1	protein coding gene	no	ENST00000254799.10;ENST00000505068.5;ENST00000545193.5;ENST00000499044.6;ENST00000502323.5;ENST00000514161.5;ENST00000506453.1	196.665	99.841	127.599	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
APOM_LS002	chr6:31656080|31656472:+	APOM	apolipoprotein M	protein coding gene	no	ENST00000375916.3	13.089	20.880	1.044	0.445(4263)	0.56(393)	0.499(8678)	non tumor-specific	alt_3prime;alt_5prime	yes
DCST2_LS005	chr1:155023620|155023832:-	DCST2	DC-STAMP domain containing 2	protein coding gene	no	ENST00000485982.5	0.283	0.000	0.674	0.002(17)	0(0)	0.032(556)	non tumor-specific	exon_skip	yes
AC022601.1_LS004	chr18:34765994|34767543:-	AC022601.1	-	lncRNA gene	no	ENST00000596954.1	1.119	0.000	0.664	0.001(9)	0(0)	0.022(390)	non tumor-specific	nAS	yes
UN_NKIRAS1_LS0018	chr3:23911450|23916865:-	NKIRAS1	NFKB inhibitor interacting Ras like 1	protein coding gene	no	.	1.839	0.175	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC106869.1_LS0032	chr2:47306627|47325731:+	AC106869.1	-	lncRNA gene	no	.	1.628	0.581	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
SMARCD3_LS021	chr7:151245671|151254295:-	SMARCD3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein coding gene	no	ENST00000477169.5	0.137	0.061	0.810	0.179(1712)	0.201(141)	0.058(1005)	non tumor-specific	exon_skip	yes
PLCH1_LS006	chr3:155485710|155486147:-	PLCH1	phospholipase C eta 1	protein coding gene	no	ENST00000447496.6;ENST00000340059.11	1.027	0.746	1.417	0.055(531)	0.037(26)	0.142(2464)	non tumor-specific	exon_skip	yes
UN_EFCAB7_LS0021	chr1:63553321|63555358:+	EFCAB7	EF-hand calcium binding domain 7	protein coding gene	no	.	3.332	0.050	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC26A9_LS005	chr1:205920230|205921566:-	SLC26A9	solute carrier family 26 member 9	protein coding gene	no	ENST00000340781.8;ENST00000367135.7;ENST00000491127.5;ENST00000367134.2	6.998	7.112	2.509	0.224(2142)	0.293(206)	0.316(5486)	non tumor-specific	exon_skip	yes
EDC4_LS025	chr16:67881180|67881265:+	EDC4	enhancer of mRNA decapping 4	protein coding gene	no	ENST00000358933.9;ENST00000572221.5;ENST00000573992.5;ENST00000576972.5;ENST00000575514.5	54.527	28.411	56.181	0.993(9510)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
PHF12_LS013	chr17:28911237|28911330:-	PHF12	PHD finger protein 12	protein coding gene	no	ENST00000378879.7	0.099	0.324	0.800	0.571(5473)	0.524(368)	0.354(6147)	non tumor-specific	exon_skip;intron_retention	yes
RC3H1_LS014	chr1:173970617|173972509:-	RC3H1	ring finger and CCCH-type domains 1	protein coding gene	no	ENST00000258349.8;ENST00000367696.6;ENST00000367694.2	5.579	2.655	2.307	0.641(6141)	0.809(568)	0.847(14728)	non tumor-specific	exon_skip	yes
MMP27_LS009	chr11:102704775|102705613:-	MMP27	matrix metallopeptidase 27	protein coding gene	no	ENST00000260229.4	1.054	0.348	0.871	0.008(80)	0.053(37)	0.146(2542)	non tumor-specific	nAS	yes
TMEM184B_LS017	chr22:38246100|38246594:-	TMEM184B	transmembrane protein 184B	protein coding gene	no	ENST00000403210.2	0.122	0.057	0.709	0.035(337)	0.085(60)	0.105(1831)	non tumor-specific	nAS	yes
AC114689.1_LS001	chr18:67790172|67790457:-	AC114689.1	-	pseudogene	no	ENST00000578727.1	0.090	0.000	0.412	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
COL13A1_LS031	chr10:69918317|69919062:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000645393.1;ENST00000479733.5;ENST00000398978.7;ENST00000354547.7;ENST00000357811.7;ENST00000520267.5;ENST00000398969.7;ENST00000517713.5;ENST00000522165.5;ENST00000520133.5	6.506	4.602	4.255	0.472(4527)	0.476(334)	0.844(14676)	non tumor-specific	exon_skip	yes
UN_PARP9_LS0019	chr3:122531205|122536168:-	PARP9	poly(ADP-ribose) polymerase family member 9	protein coding gene	no	.	2.694	0.036	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_TUB_LS0005	chr11:8060078|8060720:+	TUB	TUB bipartite transcription factor	protein coding gene	no	.	1.880	2.860	0.000	0.008(78)	0.097(68)	0(0)	non tumor-specific	nAS	no
EFCAB13_LS042	chr17:47429961|47440431:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000331493.6	0.567	0.171	0.687	0.015(146)	0.013(9)	0.07(1224)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RIPOR1_LS0009	chr16:67540704|67541517:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	.	1.571	0.601	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SLC25A36_LS0009	chr3:140952442|140956527:+	SLC25A36	solute carrier family 25 member 36	protein coding gene	no	.	0.723	0.787	0.000	0.002(16)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CALR_LS0136	chr19:12944270|12944364:-	CALR	calreticulin	protein coding gene	no	.	59.254	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MKX-AS1_LS003	chr10:27764773|27767358:+	MKX-AS1	MKX antisense RNA 1	lncRNA gene	no	ENST00000412244.1	0.967	0.002	0.699	0.002(16)	0.001(1)	0.015(256)	non tumor-specific	nAS	yes
DNAH10_LS059	chr12:123898814|123902939:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	4.252	1.797	1.233	0.018(173)	0.071(50)	0.166(2893)	non tumor-specific	nAS	yes
PRLR_LS007	chr5:35068285|35070124:-	PRLR	prolactin receptor	protein coding gene	no	ENST00000509934.1	0.568	0.193	0.692	0.058(554)	0.144(101)	0.022(383)	non tumor-specific	exon_skip	yes
UN_DHRS4L1_UP_LS0055	chr14:23959991|23990336:+	DHRS4L1	dehydrogenase/reductase 4 like 1	pseudogene	no	.	13.431	3.165	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PCSK6_LS0073	chr15:101490324|101490367:+	PCSK6	proprotein convertase subtilisin/kexin type 6	protein coding gene	no	.	1.957	0.447	0.000	0.05(479)	0.011(8)	0(0)	non tumor-specific	nAS	no
KCNQ1_LS025	chr11:2776054|2777981:+	KCNQ1	potassium voltage-gated channel subfamily Q member 1	protein coding gene	no	.;.	24.814	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AC064862.6_LS002	chr7:57630255|57637111:-	AC064862.6	-	pseudogene	no	ENST00000436522.2;ENST00000605139.1	1.536	0.007	0.897	0.01(93)	0.001(1)	0.027(471)	non tumor-specific	nAS	yes
DMAC2_LS012	chr19:41433673|41438218:-	DMAC2	distal membrane arm assembly complex 2	protein coding gene	no	ENST00000438807.7;ENST00000592922.6;ENST00000590641.6;ENST00000597457.5;ENST00000595425.5	1.865	1.883	11.653	0.979(9379)	0.994(698)	0.977(16974)	non tumor-specific	alt_5prime;exon_skip	yes
NR2F2-AS1_LS009	chr15:96153611|96156486:-	NR2F2-AS1	NR2F2 antisense RNA 1	lncRNA gene	no	ENST00000559505.1	2.239	0.039	0.675	0.001(10)	0.003(2)	0.043(744)	non tumor-specific	nAS	yes
SHANK2_LS009	chr11:70492465|70500570:-	SHANK2	SH3 and multiple ankyrin repeat domains 2	protein coding gene	no	ENST00000449833.6;ENST00000338508.8;ENST00000601538.5;ENST00000412252.5;ENST00000357171.7;ENST00000409530.5	0.499	0.720	2.520	0.022(210)	0.013(9)	0.106(1851)	non tumor-specific	exon_skip	yes
UN_CST1_LS0013	chr20:23747899|23748970:-	CST1	cystatin SN	protein coding gene	no	.	151.632	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
AC013727.1_LS001	chr2:103857263|103860122:-	AC013727.1	-	lncRNA gene	no	ENST00000455716.1	0.982	0.000	0.713	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
ADGRB2_LS010	chr1:31732154|31732517:-	ADGRB2	adhesion G protein-coupled receptor B2	protein coding gene	no	ENST00000398556.7;ENST00000398547.5;ENST00000373655.6;ENST00000398542.5;ENST00000465256.5;ENST00000373658.7;ENST00000530999.1;ENST00000527361.5;ENST00000398538.5	25.157	20.085	6.095	0.715(6853)	0.668(469)	0.904(15713)	non tumor-specific	alt_3prime	yes
NAAA_LS014	chr4:75925811|75931214:-	NAAA	N-acylethanolamine acid amidase	protein coding gene	yes	ENST00000286733.8;ENST00000602782.5;ENST00000507956.5;ENST00000505594.1	38.612	50.214	27.001	0.988(9470)	0.997(700)	0.978(17007)	non tumor-specific	exon_skip	yes
POLR1A_LS004	chr2:86030396|86031330:-	POLR1A	RNA polymerase I subunit A	protein coding gene	no	ENST00000263857.10	25.546	11.352	14.484	0.983(9421)	0.983(690)	0.973(16916)	non tumor-specific	alt_5prime;mutex_exons	yes
ZMAT3_LS002	chr3:179025228|179027423:-	ZMAT3	zinc finger matrin-type 3	protein coding gene	no	ENST00000311417.6	6.188	4.480	2.016	0.82(7853)	0.929(652)	0.825(14338)	non tumor-specific	alt_3prime	yes
TPCN1_LS025	chr12:113268872|113269757:+	TPCN1	two pore segment channel 1	protein coding gene	no	ENST00000335509.10;ENST00000550785.5;ENST00000552077.5;ENST00000541517.5;ENST00000392569.8;ENST00000428632.7	18.475	17.773	36.743	0.927(8883)	0.98(688)	0.977(16979)	non tumor-specific	alt_5prime;exon_skip	yes
PHC1_LS011	chr12:8921065|8922639:+	PHC1	polyhomeotic homolog 1	protein coding gene	no	.;.	1.611	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FBXO34_LS0025	chr14:55332458|55332817:+	FBXO34	F-box protein 34	protein coding gene	no	.	1.039	0.086	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FAM114A1_LS0001	chr4:38867834|38868127:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	.	0.776	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FKBP2_LS009	chr11:64241747|64242384:+	FKBP2	FKBP prolyl isomerase 2	protein coding gene	no	.;.	17.006	7.160	0.000	0.057(548)	0.078(55)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MBTPS1_LS0028	chr16:84074741|84075555:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	.	0.838	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
WASH7P_LS003	chr1:15947|16607:-	WASH7P	WASP family homolog 7, pseudogene	pseudogene	no	ENST00000488147.1	10.088	5.230	2.022	0.947(9077)	0.963(676)	0.736(12788)	non tumor-specific	nAS	yes
UN_LINC01094_LS0003	chr4:78646263|78662918:+	LINC01094	long intergenic non-protein coding RNA 1094	lncRNA gene	no	.	0.474	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TSPY2_LS007	chrY:6248108|6248236:+	TSPY2	testis specific protein Y-linked 2	protein coding gene	no	ENST00000470569.1	0.123	0.000	0.712	0.012(116)	0(0)	0(2)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNF24_UP_LS0018	chr20:4038006|4041675:-	RNF24	ring finger protein 24	protein coding gene	no	.	2.358	0.142	0.000	0.007(64)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZNF687_UP_LS0004	chr1:151267339|151272767:+	ZNF687	zinc finger protein 687	protein coding gene	no	.	1.716	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BHLHE40_LS0052	chr3:4983441|4984311:-	BHLHE40	basic helix-loop-helix family member e40	protein coding gene	no	.	2.404	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CD82_LS0067	chr11:44619297|44619421:-	CD82	CD82 molecule	protein coding gene	yes	.	1.355	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS0953	chr17:62065690|62065728:+	RF00019	-	small non-coding RNA gene	no	.	2.611	0.531	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
SOGA3_LS005	chr6:127482984|127512891:-	SOGA3	SOGA family member 3	protein coding gene	no	ENST00000525778.5;ENST00000465909.2	6.192	2.449	2.215	0.204(1953)	0.217(152)	0.663(11529)	non tumor-specific	nAS	yes
UN_KBTBD11_LS0013	chr8:1992194|1997305:+	KBTBD11	kelch repeat and BTB domain containing 11	protein coding gene	no	.	1.325	0.641	0.000	0.012(118)	0.011(8)	0(0)	non tumor-specific	nAS	no
DEDD2_LS015	chr19:42215252|42220074:-	DEDD2	death effector domain containing 2	protein coding gene	no	ENST00000593561.5	0.127	0.160	1.306	0.64(6128)	0.641(450)	0.65(11290)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL391704.1_UP_LS0005	chr10:90066278|90067093:+	AL391704.1	-	lncRNA gene	no	.	3.573	0.496	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLEKHG3_LS032	chr14:64741784|64744070:+	PLEKHG3	pleckstrin homology and RhoGEF domain containing G3	protein coding gene	no	ENST00000492928.1	0.133	0.011	0.656	0.799(7651)	0.765(537)	0.035(614)	non tumor-specific	nAS	yes
UN_ACTG1P18_UP_LS0019	chr6:102369934|102420907:-	ACTG1P18	actin gamma 1 pseudogene 18	pseudogene	no	.	3.401	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
CRELD2_LS021	chr22:49925557|49927255:+	CRELD2	cysteine rich with EGF like domains 2	protein coding gene	no	ENST00000404488.7;ENST00000328268.8;ENST00000407217.7;ENST00000403427.3;ENST00000487969.1	86.556	42.777	86.820	0.985(9442)	0.991(696)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC14A1_LS031	chr18:45731204|45734274:+	SLC14A1	solute carrier family 14 member 1 (Kidd blood group)	protein coding gene	no	ENST00000321925.8;ENST00000619403.4;ENST00000587601.5;ENST00000415427.7;ENST00000586951.6;ENST00000402943.6;ENST00000588179.6;ENST00000586056.5;ENST00000436407.7;ENST00000590246.6;ENST00000586142.5;ENST00000589700.5;ENST00000590377.1	3.309	7.438	4.469	0.33(3163)	0.386(271)	0.544(9448)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
KIAA1109_LS008	chr4:122187512|122187895:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000424425.5	4.594	3.731	3.321	0.5(4795)	0.762(535)	0.856(14871)	non tumor-specific	nAS	yes
TRPV2_LS018	chr17:16433698|16434859:+	TRPV2	transient receptor potential cation channel subfamily V member 2	protein coding gene	no	ENST00000577865.2	0.831	0.417	0.707	0.582(5576)	0.469(329)	0.084(1453)	non tumor-specific	alt_3prime;exon_skip	yes
PHF12_LS033	chr17:28924302|28926991:-	PHF12	PHD finger protein 12	protein coding gene	no	ENST00000332830.8;ENST00000577226.5;ENST00000378879.7;ENST00000268756.7;ENST00000578900.6;ENST00000584685.1;ENST00000582853.5;ENST00000584236.1;ENST00000332830.8;ENST00000577226.5;ENST00000378879.7;ENST00000268756.7;ENST00000578900.6;ENST00000584685.1;ENST00000582853.5;ENST00000584236.1;ENST00000332830.8;ENST00000577226.5;ENST00000378879.7;ENST00000268756.7;ENST00000578900.6;ENST00000584685.1;ENST00000582853.5;ENST00000584236.1	32.762	18.882	26.793	0.965(9250)	0.983(690)	0.979(17012)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
NRXN1_LS053	chr2:50925955|51027502:-	NRXN1	neurexin 1	protein coding gene	no	ENST00000625672.2;ENST00000406316.6;ENST00000401669.6;ENST00000405472.7;ENST00000630543.2;ENST00000405581.3;ENST00000636066.1;ENST00000637511.1	2.508	1.737	1.910	0.072(693)	0.038(27)	0.294(5110)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LBR_LS0007	chr1:225412645|225412826:-	LBR	lamin B receptor	protein coding gene	no	.	2.911	0.098	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NUP210_LS0059	chr3:13347908|13351879:-	NUP210	nucleoporin 210	protein coding gene	no	.	2.603	0.075	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SEPT8_LS024	chr5:132762645|132763706:-	SEPT8	septin 8	protein coding gene	no	ENST00000378719.6;ENST00000378721.8;ENST00000296873.11;ENST00000620483.4;ENST00000448933.5;ENST00000378706.5;ENST00000378699.6;ENST00000378701.5;ENST00000458488.2;ENST00000371478.2;ENST00000453480.5	60.636	45.670	61.152	0.985(9440)	0.994(698)	0.973(16911)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AP000911.1_LS0008	chr11:134043295|134044108:+	AP000911.1	-	lncRNA gene	no	.	2.336	0.189	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ARMC6_UP_LS0004	chr19:18964935|18992371:+	ARMC6	armadillo repeat containing 6	protein coding gene	no	.	1.241	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_REV1_LS0039	chr2:99449504|99489817:-	REV1	REV1 DNA directed polymerase	protein coding gene	no	.	1.850	0.122	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_PBX3_LS0010	chr9:125780158|125780610:-	PBX3	PBX homeobox 3	protein coding gene	no	.	1.547	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PDE7B_LS002	chr6:135947524|136108731:+	PDE7B	phosphodiesterase 7B	protein coding gene	no	ENST00000308191.10	2.444	3.273	1.612	0.364(3487)	0.671(471)	0.607(10558)	non tumor-specific	nAS	yes
MTRR_LS016	chr5:7870923|7875258:+	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein coding gene	no	ENST00000510279.5;ENST00000511461.5;ENST00000514369.5	0.395	0.330	5.379	0.885(8479)	0.92(646)	0.924(16055)	non tumor-specific	exon_skip	yes
PAX2_LS012	chr10:100748019|100749746:+	PAX2	paired box 2	protein coding gene	yes	ENST00000483202.2	0.329	0.204	1.047	0.059(564)	0.172(121)	0.003(60)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TPMT_LS0026	chr6:18153701|18155033:-	TPMT	thiopurine S-methyltransferase	protein coding gene	no	.	1.895	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ANK2_LS043	chr4:113323794|113330246:+	ANK2	ankyrin 2	protein coding gene	no	ENST00000506722.5	1.517	8.839	2.919	0.015(143)	0.044(31)	0.444(7726)	non tumor-specific	exon_skip	yes
UN_EIF2S3_LS0028	chrX:24066092|24067973:+	EIF2S3	eukaryotic translation initiation factor 2 subunit gamma	protein coding gene	no	.	21.489	0.502	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HPCA_UP_LS0001	chr1:32785861|32820424:+	HPCA	hippocalcin	protein coding gene	no	.	0.705	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
IL17REL_LS013	chr22:50000863|50001082:-	IL17REL	interleukin 17 receptor E like	protein coding gene	no	ENST00000341280.5;ENST00000389983.6	4.445	1.819	0.799	0.032(304)	0.034(24)	0.038(659)	non tumor-specific	alt_5prime	yes
CDK16_LS006	chrX:47219105|47222261:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	ENST00000519758.5;ENST00000520893.5	0.239	0.098	1.490	0.803(7694)	0.798(560)	0.755(13121)	non tumor-specific	alt_3prime;exon_skip	yes
GLIS3_LS009	chr9:3937189|3975134:-	GLIS3	GLIS family zinc finger 3	protein coding gene	no	ENST00000461870.5	0.008	0.002	0.683	0.159(1524)	0.283(199)	0.003(60)	non tumor-specific	nAS	yes
UN_AL137793.2_UP_LS0029	chr1:229093288|229197698:-	AL137793.2	-	lncRNA gene	no	.	2.673	0.331	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MIR8052_UP_LS0028	chr11:130603554|130604942:+	MIR8052	microRNA 8052	small non-coding RNA gene	no	.	3.152	0.343	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBPMS2_LS005	chr15:64749493|64750343:-	RBPMS2	RNA binding protein, mRNA processing factor 2	protein coding gene	no	ENST00000560606.5;ENST00000300069.4	15.362	23.250	14.537	0.815(7811)	0.949(666)	0.949(16491)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARHGAP1_LS0123	chr11:46679034|46679184:+	ARHGAP1	Rho GTPase activating protein 1	protein coding gene	no	.	0.894	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM78_UP_LS0012	chr1:229185215|229185754:+	TMEM78	transmembrane protein 78	lncRNA gene	no	.	4.682	0.726	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEBL_LS017	chr10:20823300|20826447:-	NEBL	nebulette	protein coding gene	no	ENST00000377122.8;ENST00000493005.5;ENST00000460652.1	0.921	1.306	8.338	0.212(2032)	0.239(168)	0.757(13163)	non tumor-specific	exon_skip	yes
ARHGEF2_LS030	chr1:155966479|155966820:-	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000313695.11;ENST00000361247.8;ENST00000462460.6;ENST00000313667.8;ENST00000471589.5;ENST00000497907.5;ENST00000476273.1;ENST00000609707.1	43.782	25.941	42.731	0.969(9287)	0.981(689)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_FP236383.2_UP_LS0096	chr21:8398530|8442686:-	FP236383.2	-	lncRNA gene	no	.	435.186	115.680	0.000	0.014(130)	0.014(10)	0(0)	non tumor-specific	nAS	no
AL732372.2_LS002	chr1:365692|368251:-	AL732372.2	-	pseudogene	no	ENST00000453935.1	0.113	0.059	0.705	0.243(2324)	0.228(160)	0.02(342)	non tumor-specific	nAS	yes
UN_CPSF6_LS0062	chr12:69258787|69258896:-	CPSF6	cleavage and polyadenylation specific factor 6	protein coding gene	no	.	1.810	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCTP1_LS0037	chr5:94989271|95017367:-	MCTP1	multiple C2 and transmembrane domain containing 1	protein coding gene	no	.	3.328	2.095	0.000	0.014(138)	0.033(23)	0(0)	non tumor-specific	nAS	no
MYO15B_LS068	chr17:75612893|75612974:+	MYO15B	myosin XVB	protein coding gene	no	ENST00000584516.5;ENST00000619501.4;ENST00000621743.4;ENST00000610510.4;ENST00000633867.1;ENST00000578462.2;ENST00000642007.1	22.901	16.573	39.828	0.722(6918)	0.838(588)	0.968(16831)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
COL6A5_LS030	chr3:130426249|130426367:+	COL6A5	collagen type VI alpha 5 chain	protein coding gene	no	ENST00000312481.11;ENST00000265379.10	3.651	1.612	1.599	0.03(284)	0.124(87)	0.09(1556)	non tumor-specific	nAS	yes
UN_INTS4_LS0042	chr11:77991299|77992574:-	INTS4	integrator complex subunit 4	protein coding gene	yes	.	1.788	0.075	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
GRAMD1B_LS004	chr11:123431166|123480816:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	ENST00000635736.1	2.740	5.673	1.234	0.187(1789)	0.274(192)	0.464(8057)	non tumor-specific	nAS	yes
UN_PTH2R_LS0106	chr2:208779501|208779587:-	PTH2R	parathyroid hormone 2 receptor	protein coding gene	no	.	2.629	1.817	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NENF_LS0004	chr1:212433130|212442574:+	NENF	neudesin neurotrophic factor	protein coding gene	no	.	25.226	2.344	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
KIF23_LS027	chr15:69440077|69440308:+	KIF23	kinesin family member 23	protein coding gene	no	ENST00000260363.9;ENST00000395392.6;ENST00000352331.8;ENST00000561089.5;ENST00000647715.1;ENST00000558585.5	26.354	3.608	3.920	0.802(7682)	0.499(350)	0.797(13845)	non tumor-specific	alt_5prime;exon_skip	yes
RBP2_LS003	chr3:139462290|139476387:-	RBP2	RIMS binding protein 2	protein coding gene	no	ENST00000232217.6;ENST00000511956.1	2.655	24.354	1.175	0.156(1491)	0.423(297)	0.128(2225)	non tumor-specific	exon_skip	yes
UN_NCOA1_UP_LS0004	chr2:24360805|24397155:+	NCOA1	nuclear receptor coactivator 1	protein coding gene	no	.	2.087	0.100	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
PGK1_LS003	chrX:78096768|78109867:+	PGK1	phosphoglycerate kinase 1	protein coding gene	no	ENST00000477335.5	0.288	0.076	0.669	0.064(617)	0.023(16)	0.085(1477)	non tumor-specific	exon_skip	yes
SELP_LS010	chr1:169596134|169596991:-	SELP	selectin P	protein coding gene	no	ENST00000426706.6;ENST00000263686.10;ENST00000367786.6;ENST00000367788.6	5.694	9.390	8.654	0.545(5218)	0.934(656)	0.791(13745)	non tumor-specific	exon_skip	yes
MDN1_LS036	chr6:89683330|89683831:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	ENST00000369393.7;ENST00000629399.2	9.144	6.220	8.203	0.823(7887)	0.932(654)	0.952(16551)	non tumor-specific	nAS	yes
UN_AP003100.2_LS0007	chr11:112746916|112750154:+	AP003100.2	-	lncRNA gene	no	.	2.360	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
NDUFA4L2_LS019	chr12:57237335|57240679:-	NDUFA4L2	NDUFA4 mitochondrial complex associated like 2	protein coding gene	no	ENST00000393825.5;ENST00000393825.5	0.263	0.193	0.850	0.304(2917)	0.078(55)	0.115(1991)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GPNMB_LS0017	chr7:23260138|23260488:+	GPNMB	glycoprotein nmb	protein coding gene	no	.	102.867	29.431	0.000	0.074(711)	0.075(53)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL606489.1_LS0009	chr1:204400789|204409492:-	AL606489.1	-	lncRNA gene	no	.	11.925	0.151	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	nAS	no
POLG2_LS008	chr17:64480389|64482919:-	POLG2	DNA polymerase gamma 2, accessory subunit	protein coding gene	no	ENST00000539111.6;ENST00000582501.5;ENST00000577506.5;ENST00000539111.6;ENST00000582501.5;ENST00000577506.5	16.558	6.410	15.279	0.989(9472)	0.994(698)	0.978(17005)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AKR1B1_LS0009	chr7:134448493|134449720:-	AKR1B1	aldo-keto reductase family 1 member B	protein coding gene	yes	.	6.826	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF532_LS031	chr18:58920633|58979055:+	ZNF532	zinc finger protein 532	protein coding gene	no	ENST00000586997.1	0.527	0.217	1.164	0.454(4351)	0.436(306)	0.53(9209)	non tumor-specific	exon_skip	yes
UN_AC005837.1_UP_LS0003	chr17:76646041|76668237:+	AC005837.1	-	lncRNA gene	no	.	1.075	0.397	0.000	0.002(15)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC124944.3_LS0056	chr3:195942876|195943725:+	AC124944.3	-	pseudogene	no	.	0.853	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FKBP9_LS0009	chr7:32980553|32983500:+	FKBP9	FKBP prolyl isomerase 9	protein coding gene	no	.	1.524	0.345	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_RRBP1_LS0276	chr20:17659833|17660107:+	RRBP1	ribosome binding protein 1	protein coding gene	no	.	2.238	0.623	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC113208.2_LS002	chr15:75228552|75228850:-	AC113208.2	-	pseudogene	no	ENST00000637356.2;ENST00000563803.1	0.241	0.000	0.647	0(2)	0(0)	0.003(60)	non tumor-specific	nAS	yes
ROBO4_LS010	chr11:124893730|124893860:-	ROBO4	roundabout guidance receptor 4	protein coding gene	no	ENST00000306534.7;ENST00000533054.5;ENST00000532216.5;ENST00000525182.1	13.243	18.931	13.500	0.925(8865)	0.984(691)	0.929(16143)	non tumor-specific	exon_skip	yes
UN_LINC00630_LS0039	chrX:102839863|102843329:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	.	0.710	0.126	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	nAS	no
ATP13A5_LS015	chr3:193315096|193318991:-	ATP13A5	ATPase 13A5	protein coding gene	no	ENST00000342358.8	6.862	1.318	1.852	0.063(607)	0.142(100)	0.272(4725)	non tumor-specific	nAS	yes
NONO_LS023	chrX:71291972|71294398:+	NONO	non-POU domain containing octamer binding	protein coding gene	no	ENST00000418921.1	0.669	0.288	1.170	0.917(8789)	0.907(637)	0.66(11464)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_IRF9_LS0036	chr14:24164883|24165870:-	IRF9	interferon regulatory factor 9	protein coding gene	no	.	2.385	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
KAT7_LS004	chr17:49792033|49796750:+	KAT7	lysine acetyltransferase 7	protein coding gene	no	ENST00000259021.8;ENST00000509773.5;ENST00000424009.6;ENST00000509124.5;ENST00000506533.5;ENST00000435742.2	27.731	18.898	24.722	0.948(9079)	0.984(691)	0.978(17006)	non tumor-specific	exon_skip	yes
FASTK_LS024	chr7:151079021|151080437:-	FASTK	Fas activated serine/threonine kinase	protein coding gene	no	.;.;.	1.522	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CAPZB_LS016	chr1:19385626|19385721:-	CAPZB	capping actin protein of muscle Z-line subunit beta	protein coding gene	no	ENST00000457768.5	0.081	0.120	0.709	0.86(8241)	0.882(619)	0.274(4762)	non tumor-specific	nAS	yes
RBPMS_LS038	chr8:30549585|30558887:+	RBPMS	RNA binding protein, mRNA processing factor	protein coding gene	no	ENST00000287771.9	0.266	1.427	3.200	0.612(5864)	0.806(566)	0.675(11725)	non tumor-specific	exon_skip;mutex_exons	yes
MME_LS005	chr3:155080001|155084158:+	MME	membrane metalloendopeptidase	protein coding gene	yes	ENST00000481828.5;ENST00000481828.5	0.282	1.057	2.346	0.445(4264)	0.641(450)	0.501(8715)	non tumor-specific	alt_3prime;alt_5prime	yes
HCLS1_LS011	chr3:121642981|121644818:-	HCLS1	hematopoietic cell-specific Lyn substrate 1	protein coding gene	no	ENST00000314583.7;ENST00000428394.6;ENST00000464274.5	69.052	30.112	21.492	0.987(9452)	0.996(699)	0.971(16880)	non tumor-specific	exon_skip	yes
VASH2_LS017	chr1:212974070|212988512:+	VASH2	vasohibin 2	protein coding gene	no	ENST00000366966.6;ENST00000366968.8;ENST00000366965.6;ENST00000366967.6;ENST00000517399.2	3.335	1.243	1.030	0.396(3793)	0.359(252)	0.375(6526)	non tumor-specific	nAS	yes
MATR3_LS086	chr5:139322967|139325296:+	MATR3	matrin 3	protein coding gene	no	ENST00000620916.2;ENST00000502422.5	13.313	3.528	29.472	0.185(1768)	0.181(127)	0.978(16993)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PMS2P6_LS0003	chr7:73097567|73105293:+	PMS2P6	PMS1 homolog 2, mismatch repair system component pseudogene 6	pseudogene	no	.	2.264	0.051	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
WEE2-AS1_LS004	chr7:141711800|141714189:-	WEE2-AS1	WEE2 antisense RNA 1	lncRNA gene	no	ENST00000471512.5	0.434	0.000	0.637	0.001(11)	0(0)	0.015(253)	non tumor-specific	nAS	yes
UN_BX890604.2_LS0156	chrX:3891434|3929867:+	BX890604.2	-	lncRNA gene	no	.	14.277	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
DGKB_LS026	chr7:14736194|14753928:-	DGKB	diacylglycerol kinase beta	protein coding gene	no	ENST00000399322.7;ENST00000403951.6;ENST00000402815.5;ENST00000406247.7;ENST00000477401.5;ENST00000467449.1;ENST00000437998.1	0.355	1.707	2.296	0.038(363)	0.01(7)	0.109(1894)	non tumor-specific	exon_skip	yes
CYB5R2_LS002	chr11:7665546|7666420:-	CYB5R2	cytochrome b5 reductase 2	protein coding gene	yes	.;.	2.462	1.013	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CDCA8_LS008	chr1:37703347|37705441:+	CDCA8	cell division cycle associated 8	protein coding gene	no	ENST00000373055.5;ENST00000327331.2	34.804	5.054	1.941	0.935(8954)	0.746(524)	0.74(12869)	non tumor-specific	exon_skip	yes
UN_DNAH7_LS0032	chr2:195853528|195857377:-	DNAH7	dynein axonemal heavy chain 7	protein coding gene	no	.	1.981	0.210	0.000	0.019(179)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_STEAP1B_LS0001	chr7:22419836|22428678:-	STEAP1B	STEAP family member 1B	protein coding gene	no	.	2.552	0.000	0.000	0.006(59)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LRRFIP1_LS0035	chr2:237727935|237729780:+	LRRFIP1	LRR binding FLII interacting protein 1	protein coding gene	no	.	2.606	8.261	0.000	0.007(68)	0.031(22)	0(0)	non tumor-specific	exon_skip	no
ASCC1_LS008	chr10:72133181|72152869:-	ASCC1	activating signal cointegrator 1 complex subunit 1	protein coding gene	no	ENST00000394919.5;ENST00000342444.8;ENST00000317168.10;ENST00000486689.6;ENST00000530394.5;ENST00000317126.8;ENST00000394915.7	47.776	25.809	32.858	0.991(9498)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_MID1IP1_LS0058	chrX:38805782|38806064:-	MID1IP1	MID1 interacting protein 1	protein coding gene	no	.	2.126	0.181	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC25A39_LS037	chr17:44324199|44324299:-	SLC25A39	solute carrier family 25 member 39	protein coding gene	no	ENST00000592857.5	0.016	0.029	0.832	0.396(3796)	0.275(193)	0.405(7046)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PARG_LS009	chr10:49865381|49867072:-	PARG	poly(ADP-ribose) glycohydrolase	protein coding gene	no	ENST00000497481.1	0.165	0.033	0.666	0.036(342)	0.038(27)	0.031(543)	non tumor-specific	nAS	yes
UN_ARLNC1_UP_LS0004	chr16:80925843|80932173:-	ARLNC1	androgen receptor regulated long noncoding RNA 1	lncRNA gene	no	.	1.667	0.263	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
CCDC136_LS021	chr7:128805901|128817804:+	CCDC136	coiled-coil domain containing 136	protein coding gene	yes	.;.	2.481	0.282	0.000	0.001(8)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PON1_LS004	chr7:95308211|95311451:-	PON1	paraoxonase 1	protein coding gene	no	ENST00000222381.7;ENST00000433729.1	25.457	87.498	1.244	0.17(1624)	0.192(135)	0.358(6220)	non tumor-specific	nAS	yes
UN_EHMT2_LS0034	chr6:31882791|31882927:+	EHMT2	euchromatic histone lysine methyltransferase 2	protein coding gene	no	.	1.648	0.443	0.000	0.008(73)	0.003(2)	0(0)	non tumor-specific	nAS	no
ADAMTS5_LS003	chr21:26932179|26932861:-	ADAMTS5	ADAM metallopeptidase with thrombospondin type 1 motif 5	protein coding gene	no	ENST00000284987.5	4.271	4.822	4.172	0.46(4408)	0.674(473)	0.74(12862)	non tumor-specific	nAS	yes
FHL1_LS004	chrX:136147878|136169907:+	FHL1	hemophagocytic lymphohistiocytosis 1	protein coding gene	yes	ENST00000420362.5	0.045	0.184	3.609	0.383(3669)	0.701(492)	0.785(13653)	non tumor-specific	nAS	yes
UN_AC087612.1_LS0013	chr15:63105323|63106242:+	AC087612.1	-	lncRNA gene	no	.	2.014	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SP2_LS004	chr17:47897927|47914726:+	SP2	Sp2 transcription factor	protein coding gene	no	ENST00000637943.1	1.066	0.163	0.652	0.008(81)	0.004(3)	0.075(1312)	non tumor-specific	nAS	yes
NSD2_LS028	chr4:1939778|1942339:+	NSD2	nuclear receptor binding SET domain protein 2	protein coding gene	no	ENST00000353275.9;ENST00000312087.10;ENST00000503128.5;ENST00000398261.5	2.527	1.389	4.806	0.932(8926)	0.947(665)	0.939(16316)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RBM6_LS008	chr3:49962685|50054335:+	RBM6	RNA binding motif protein 6	protein coding gene	yes	ENST00000419610.5	0.036	0.058	0.755	0.385(3688)	0.425(298)	0.27(4692)	non tumor-specific	exon_skip	yes
CDH18_LS020	chr5:19839242|19988086:-	CDH18	cadherin 18	protein coding gene	no	ENST00000511273.1	0.182	0.014	0.884	0.028(269)	0.007(5)	0.023(403)	non tumor-specific	exon_skip	yes
CHORDC1_LS024	chr11:90215230|90218135:-	CHORDC1	cysteine and histidine rich domain containing 1	protein coding gene	no	ENST00000320585.10;ENST00000533724.5;ENST00000525317.5;ENST00000533772.5;ENST00000530765.5;ENST00000529402.1	28.665	13.657	18.300	0.974(9330)	0.991(696)	0.978(16993)	non tumor-specific	exon_skip	yes
UN_IQGAP1_LS0040	chr15:90494821|90499998:-	IQGAP1	IQ motif containing GTPase activating protein 1	protein coding gene	no	.	3.557	0.235	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
EME2_LS006	chr16:1775408|1775569:+	EME2	essential meiotic structure-specific endonuclease subunit 2	protein coding gene	no	ENST00000568449.5;ENST00000570069.5;ENST00000561564.5;ENST00000565326.1;ENST00000561903.6	2.740	1.036	11.495	0.906(8681)	0.855(600)	0.974(16927)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_RANBP10_LS0014	chr16:67731383|67731472:-	RANBP10	RAN binding protein 10	protein coding gene	no	.	0.954	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FAM186B_LS014	chr12:49604538|49605382:-	FAM186B	family with sequence similarity 186 member B	protein coding gene	no	ENST00000551047.5;ENST00000257894.2	0.190	0.007	0.657	0.031(298)	0.048(34)	0.043(755)	non tumor-specific	nAS	yes
PPP1R21_LS034	chr2:48511468|48514715:+	PPP1R21	protein phosphatase 1 regulatory subunit 21	protein coding gene	no	ENST00000416913.5;ENST00000281394.8;ENST00000449090.6;ENST00000294952.12;ENST00000476199.1	42.075	31.813	44.568	0.971(9305)	0.977(686)	0.979(17021)	non tumor-specific	alt_5prime	yes
TPTE_LS002	chr21:10524688|10527355:+	TPTE	transmembrane phosphatase with tensin homology	protein coding gene	no	ENST00000622113.4;ENST00000612957.4;ENST00000618007.4;ENST00000427445.6;ENST00000612746.1	3.972	0.112	0.709	0.05(475)	0.001(1)	0.024(415)	non tumor-specific	nAS	yes
UN_UBE2D3_LS0011	chr4:102799500|102800860:-	UBE2D3	ubiquitin conjugating enzyme E2 D3	protein coding gene	no	.	3.744	0.383	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC064871.1_LS003	chr2:183107703|183108440:-	AC064871.1	-	lncRNA gene	no	ENST00000444562.5	0.367	0.000	0.589	0(1)	0(0)	0.001(17)	non tumor-specific	nAS	yes
DOC2B_LS005	chr17:161541|162081:-	DOC2B	double C2 domain beta	protein coding gene	no	ENST00000613549.2;ENST00000343572.8	6.337	7.433	9.300	0.794(7604)	0.905(635)	0.899(15620)	non tumor-specific	alt_5prime	yes
RIPOR1_LS035	chr16:67546231|67546366:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	ENST00000379312.7;ENST00000042381.8;ENST00000540839.7;ENST00000422602.8;ENST00000428437.6;ENST00000569733.6	106.772	65.710	132.721	0.935(8959)	0.943(662)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_GTF2IP1_LS0011	chr7:75196796|75196977:-	GTF2IP1	general transcription factor IIi pseudogene 1	pseudogene	no	.	13.269	1.180	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UTP23_LS0005	chr8:116769910|116770192:+	UTP23	UTP23 small subunit processome component	protein coding gene	no	.	1.439	0.301	0.000	0.002(21)	0.009(6)	0(0)	non tumor-specific	nAS	no
SRSF11_LS009	chr1:70222798|70228422:+	SRSF11	serine and arginine rich splicing factor 11	protein coding gene	no	ENST00000486667.5	0.289	0.242	1.410	0.138(1321)	0.078(55)	0.66(11467)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM243_LS005	chr7:87199057|87219426:-	TMEM243	transmembrane protein 243	protein coding gene	no	ENST00000257637.7;ENST00000433078.5;ENST00000423734.1;ENST00000474074.1	34.339	22.196	41.695	0.991(9496)	0.989(694)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
SNAP23_LS002	chr15:42491570|42492861:+	SNAP23	synaptosome associated protein 23	protein coding gene	no	ENST00000568227.5	0.140	0.059	0.624	0.039(378)	0.054(38)	0.014(252)	non tumor-specific	nAS	yes
KLHL40_LS005	chr3:42691005|42691882:+	KLHL40	kelch like family member 40	protein coding gene	no	ENST00000287777.4	8.121	26.365	1.066	0.029(278)	0.053(37)	0.341(5925)	non tumor-specific	nAS	yes
DIP2B_LS025	chr12:50708562|50714395:+	DIP2B	disco interacting protein 2 homolog B	protein coding gene	no	ENST00000301180.9;ENST00000546732.1	13.884	9.437	7.219	0.894(8565)	0.954(670)	0.966(16791)	non tumor-specific	exon_skip	yes
IL12RB1_LS014	chr19:18076327|18077516:-	IL12RB1	interleukin 12 receptor subunit beta 1	protein coding gene	no	ENST00000593993.6;ENST00000600835.6;ENST00000322153.11	6.357	2.945	1.685	0.649(6220)	0.615(432)	0.616(10703)	non tumor-specific	alt_5prime;exon_skip	yes
PPM1M_LS002	chr3:52246314|52246695:+	PPM1M	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein coding gene	no	ENST00000296487.8;ENST00000409502.7	0.547	0.592	1.811	0.617(5907)	0.772(542)	0.758(13180)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
COL5A1_LS025	chr9:134766498|134767000:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	ENST00000371817.7;ENST00000618395.4	65.822	28.946	21.229	0.852(8167)	0.952(668)	0.905(15723)	non tumor-specific	exon_skip	yes
CPVL_LS022	chr7:29184548|29195077:-	CPVL	carboxypeptidase vitellogenic like	protein coding gene	no	ENST00000449801.5	0.399	0.041	1.614	0.002(16)	0.006(4)	0.029(502)	non tumor-specific	exon_skip	yes
UN_HSP90B1_LS0045	chr12:103946930|103947336:-	HSP90B1	heat shock protein 90 beta family member 1	protein coding gene	yes	.	39.034	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AFAP1L2_LS0049	chr10:114340731|114362963:-	AFAP1L2	actin filament associated protein 1 like 2	protein coding gene	yes	.	1.249	0.239	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_AC003985.2_UP_LS0003	chr7:25397582|25431910:-	AC003985.2	-	lncRNA gene	no	.	4.814	0.203	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02474_LS002	chr1:221966502|221983000:+	LINC02474	long intergenic non-protein coding RNA 2474	lncRNA gene	no	ENST00000441160.1	0.930	0.000	0.605	0.017(160)	0(0)	0.001(15)	non tumor-specific	nAS	yes
AC246817.2_LS004	chr8:2674845|2705215:-	AC246817.2	-	lncRNA gene	no	ENST00000519393.5;ENST00000517984.5	0.265	0.173	0.772	0.075(720)	0.158(111)	0.198(3443)	non tumor-specific	nAS	yes
UN_CRMP1_LS0206	chr4:5827565|5828519:+	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	2.059	0.860	0.000	0.241(2308)	0.415(291)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_SZRD1_LS0095	chr1:16397169|16397424:+	SZRD1	SUZ RNA binding domain containing 1	protein coding gene	no	.	58.042	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AL162742.1_LS002	chr10:104324023|104326339:+	AL162742.1	-	lncRNA gene	no	ENST00000434792.1	0.586	0.022	1.001	0.022(211)	0.007(5)	0.088(1530)	non tumor-specific	nAS	yes
AC104407.1_LS001	chr4:155207815|155208025:-	AC104407.1	-	lncRNA gene	no	ENST00000511017.5;ENST00000508687.1	2.493	0.620	1.211	0.057(546)	0.154(108)	0.237(4120)	non tumor-specific	nAS	yes
UN_CREB3L3_LS0044	chr19:4172337|4172392:-	CREB3L3	cAMP responsive element binding protein 3 like 3	protein coding gene	no	.	14.023	16.892	0.000	0.013(126)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_SLC2A1_LS0007	chr1:42926344|42926956:+	SLC2A1	solute carrier family 2 member 1	protein coding gene	no	.	4.610	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPIPB3_LS0099	chr16:21404088|21404215:+	NPIPB3	nuclear pore complex interacting protein family member B3	protein coding gene	no	.	9.848	0.375	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC124242.1_LS004	chr8:18086936|18087025:+	AC124242.1	-	lncRNA gene	no	ENST00000505114.6;ENST00000499554.6;ENST00000517747.5;ENST00000517798.1	0.888	0.855	1.199	0.426(4086)	0.667(468)	0.583(10139)	non tumor-specific	nAS	yes
AHI1_LS027	chr6:135428759|135429882:-	AHI1	Abelson helper integration site 1	protein coding gene	yes	ENST00000367800.8;ENST00000457866.6;ENST00000475846.6;ENST00000367799.6;ENST00000265602.10;ENST00000531788.5;ENST00000327035.10	8.879	5.992	12.296	0.874(8378)	0.927(651)	0.954(16585)	non tumor-specific	exon_skip	yes
LTBP1_LS019	chr2:33259610|33262722:+	LTBP1	latent transforming growth factor beta binding protein 1	protein coding gene	no	ENST00000404816.6;ENST00000418533.6;ENST00000402934.5;ENST00000404525.5;ENST00000407925.5;ENST00000413303.5;ENST00000468091.2	13.717	12.754	11.159	0.867(8309)	0.972(682)	0.922(16027)	non tumor-specific	nAS	yes
ACTR6_LS006	chr12:100205744|100207663:+	ACTR6	actin related protein 6	protein coding gene	no	ENST00000551652.5;ENST00000553038.5;ENST00000188312.6;ENST00000546902.5;ENST00000549977.5;ENST00000547458.5;ENST00000552376.5;ENST00000551617.1	24.054	15.403	13.066	0.976(9351)	0.997(700)	0.971(16870)	non tumor-specific	alt_5prime;exon_skip	yes
EXOC3L4_LS017	chr14:103108517|103110360:+	EXOC3L4	exocyst complex component 3 like 4	protein coding gene	no	.;.	6.954	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DGKI_LS002	chr7:137395697|137397377:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000453654.6;ENST00000494390.5;ENST00000288490.9;ENST00000446122.5;ENST00000424189.6;ENST00000477835.5;ENST00000497321.5;ENST00000614521.1	3.959	2.367	1.968	0.2(1916)	0.245(172)	0.51(8865)	non tumor-specific	exon_skip	yes
NECTIN4_LS006	chr1:161073299|161073720:-	NECTIN4	nectin cell adhesion molecule 4	protein coding gene	yes	ENST00000368012.3	27.286	14.356	3.704	0.638(6108)	0.762(535)	0.402(6987)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SIRT3_LS035	chr11:233526|236048:-	SIRT3	sirtuin 3	protein coding gene	yes	.;.	1.854	0.382	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
MAP3K5_LS014	chr6:136611387|136613120:-	MAP3K5	mitogen-activated protein kinase kinase kinase 5	protein coding gene	no	ENST00000359015.4	24.189	25.086	14.387	0.93(8911)	0.987(693)	0.975(16948)	non tumor-specific	alt_3prime;exon_skip	yes
PDE7B_LS006	chr6:136149150|136151160:+	PDE7B	phosphodiesterase 7B	protein coding gene	no	ENST00000308191.10;ENST00000615259.4;ENST00000446774.1	2.944	5.003	3.712	0.603(5780)	0.887(623)	0.835(14512)	non tumor-specific	nAS	yes
UN_POTEG_LS0005	chr14:19425712|19425808:-	POTEG	POTE ankyrin domain family member G	protein coding gene	no	.	3.343	0.214	0.000	0.014(135)	0.02(14)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SPATA3_LS013	chr2:231019887|231021613:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000452881.5;ENST00000495639.1	1.426	0.000	0.665	0(1)	0(0)	0.003(46)	non tumor-specific	nAS	yes
LRP6_LS026	chr12:12184111|12186923:-	LRP6	LDL receptor related protein 6	protein coding gene	no	ENST00000261349.8;ENST00000538239.5;ENST00000543091.1	6.041	5.386	5.087	0.755(7236)	0.927(651)	0.9(15649)	non tumor-specific	nAS	yes
OSR2_LS013	chr8:98948421|98948839:+	OSR2	odd-skipped related transciption factor 2	protein coding gene	no	ENST00000457907.3;ENST00000522510.5;ENST00000457907.3;ENST00000522510.5	0.375	1.220	1.955	0.196(1879)	0.348(244)	0.537(9331)	non tumor-specific	alt_5prime;exon_skip	yes
LGR6_LS018	chr1:202303347|202304559:+	LGR6	leucine rich repeat containing G protein-coupled receptor 6	protein coding gene	no	ENST00000367278.7;ENST00000255432.11;ENST00000487787.5;ENST00000423542.5;ENST00000439764.2;ENST00000308543.3	6.185	4.525	4.235	0.424(4066)	0.721(506)	0.725(12595)	non tumor-specific	nAS	yes
RAD52_LS019	chr12:929886|930051:-	RAD52	RAD52 homolog, DNA repair protein	protein coding gene	no	ENST00000358495.7;ENST00000468231.5;ENST00000430095.6;ENST00000488642.6;ENST00000461568.5;ENST00000536177.5;ENST00000542584.5;ENST00000545564.5;ENST00000545967.1;ENST00000542785.5;ENST00000397230.6	3.057	2.010	5.369	0.865(8287)	0.892(626)	0.942(16369)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RNA5SP389_UP_LS0653	chr14:106790732|106802733:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	77.534	11.134	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
HOXA10-AS_LS002	chr7:27168993|27171308:+	HOXA10-AS	HOXA10 antisense RNA	lncRNA gene	no	ENST00000519694.1	0.336	0.268	1.022	0.58(5557)	0.509(357)	0.215(3744)	non tumor-specific	nAS	yes
GMDS_LS009	chr6:1679926|1726416:-	GMDS	GDP-mannose 4,6-dehydratase	protein coding gene	no	ENST00000533279.1	0.061	0.019	0.738	0.811(7769)	0.789(554)	0.191(3322)	non tumor-specific	nAS	yes
UN_MIR194-2HG_LS0005	chr11:64890520|64892590:-	MIR194-2HG	MIR194-2 host gene	lncRNA gene	no	.	1.829	1.922	0.000	0.003(25)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_FKBP5_LS0027	chr6:35619210|35620128:-	FKBP5	FKBP prolyl isomerase 5	protein coding gene	no	.	10.761	0.412	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TIAM1_LS020	chr21:31195305|31202908:-	TIAM1	TIAM Rac1 associated GEF 1	protein coding gene	no	ENST00000286827.7	8.919	4.348	2.916	0.472(4527)	0.42(295)	0.759(13201)	non tumor-specific	exon_skip	yes
UN_HOXC6_LS0023	chr12:54016904|54017314:+	HOXC6	homeobox C6	protein coding gene	no	.	0.374	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
IRF2BP2_LS003	chr1:234607852|234608495:-	IRF2BP2	interferon regulatory factor 2 binding protein 2	protein coding gene	no	ENST00000366610.7	26.809	13.525	56.655	0.94(9010)	0.932(654)	0.979(17019)	non tumor-specific	alt_5prime	yes
AKT2_LS031	chr19:40238973|40241938:-	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	ENST00000578615.5;ENST00000578615.5	0.022	0.019	1.282	0.687(6584)	0.714(501)	0.69(12000)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CCNY_LS0049	chr10:35566134|35569132:-	CCNY	cyclin Y	protein coding gene	no	.	2.390	2.176	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
GNL3L_LS007	chrX:54539101|54540135:+	GNL3L	G protein nucleolar 3 like	protein coding gene	no	ENST00000336470.8;ENST00000360845.2;ENST00000489691.1	15.681	7.241	5.980	0.927(8877)	0.956(671)	0.956(16611)	non tumor-specific	alt_5prime	yes
UN_PTPN3_LS0074	chr9:109463451|109481170:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	.	0.872	0.239	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
MAP3K19_LS007	chr2:134983825|134985800:-	MAP3K19	mitogen-activated protein kinase kinase kinase 19	protein coding gene	no	ENST00000392915.6;ENST00000375845.8;ENST00000358371.8;ENST00000638025.1;ENST00000437365.1	2.121	0.551	1.619	0.092(877)	0.135(95)	0.081(1416)	non tumor-specific	exon_skip	yes
TSEN54_LS012	chr17:75517072|75517161:+	TSEN54	tRNA splicing endonuclease subunit 54	protein coding gene	no	ENST00000434205.7;ENST00000333213.10;ENST00000583454.1;ENST00000580013.5;ENST00000583173.5;ENST00000583818.1;ENST00000583634.1	15.055	5.975	16.029	0.991(9492)	0.996(699)	0.978(17005)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LINC00494_UP_LS0012	chr20:48195439|48197537:+	LINC00494	long intergenic non-protein coding RNA 494	lncRNA gene	no	.	3.880	0.469	0.000	0.01(93)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AL158827.2_UP_LS0005	chr9:96721130|96773460:+	AL158827.2	-	pseudogene	no	.	1.221	0.657	0.000	0.316(3030)	0.484(340)	0(0)	non tumor-specific	nAS	no
BET1L_LS001	chr11:167884|168943:-	BET1L	Bet1 golgi vesicular membrane trafficking protein like	protein coding gene	no	ENST00000410108.5	0.398	0.080	0.791	0.434(4157)	0.51(358)	0.175(3040)	non tumor-specific	nAS	yes
UN_AL353803.2_LS0011	chr9:129438879|129446772:+	AL353803.2	-	lncRNA gene	no	.	0.412	0.042	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HMGB2_LS0005	chr4:173332955|173333118:-	HMGB2	high mobility group box 2	protein coding gene	no	.	99.621	3.389	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CORO7_LS029	chr16:4388631|4395289:-	CORO7	coronin 7	protein coding gene	no	ENST00000251166.8;ENST00000571227.5;ENST00000537233.6;ENST00000574025.5;ENST00000575714.5;ENST00000574311.5;ENST00000571756.5;ENST00000572549.5;ENST00000572044.1;ENST00000573245.1;ENST00000571052.5;ENST00000575038.5;ENST00000570645.5	30.078	13.739	23.896	0.984(9429)	0.99(695)	0.979(17015)	non tumor-specific	nAS	yes
UN_TMC2_LS0013	chr20:2603185|2610419:+	TMC2	transmembrane channel like 2	protein coding gene	no	.	2.736	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NBEAP1_LS0001	chr15:20662057|20669468:-	NBEAP1	neurobeachin pseudogene 1	pseudogene	no	.	2.983	0.143	0.000	0.016(157)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GSDMD_LS0014	chr8:143557989|143558378:+	GSDMD	gasdermin D	protein coding gene	no	.	7.543	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
PWRN1_LS014	chr15:24566800|24567897:+	PWRN1	Prader-Willi region non-protein coding RNA 1	lncRNA gene	no	ENST00000568609.5	0.053	0.000	0.627	0(2)	0(0)	0.006(101)	non tumor-specific	nAS	yes
CLNK_LS022	chr4:10598049|10667859:-	CLNK	cytokine dependent hematopoietic cell linker	protein coding gene	no	ENST00000226951.10	20.583	2.130	0.892	0.045(427)	0.188(132)	0.14(2428)	non tumor-specific	exon_skip	yes
UN_RPS20P25_UP_LS0009	chr9:80034398|80082949:+	RPS20P25	ribosomal protein S20 pseudogene 25	pseudogene	no	.	2.071	0.282	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPTBN2_LS0033	chr11:66690283|66690656:-	SPTBN2	spectrin beta, non-erythrocytic 2	protein coding gene	no	.	8.092	3.828	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DDAH2_LS0022	chr6:31728984|31729080:-	DDAH2	dimethylarginine dimethylaminohydrolase 2	protein coding gene	no	.	37.071	1.135	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_STPG2-AS1_UP_LS0001	chr4:97034689|97134600:+	STPG2-AS1	STPG2 antisense RNA 1	lncRNA gene	no	.	3.542	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
TRAF4_LS007	chr17:28747264|28747822:+	TRAF4	TNF receptor associated factor 4	protein coding gene	no	ENST00000422344.5	0.217	0.266	1.156	0.847(8117)	0.845(593)	0.486(8445)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RPL27A_LS012	chr11:8684892|8685678:+	RPL27A	ribosomal protein L27a	protein coding gene	no	ENST00000314138.10;ENST00000524496.5;ENST00000534599.5;ENST00000532359.5;ENST00000530022.5;ENST00000526562.5;ENST00000530913.1	653.842	454.001	4094.178	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
IPO8_LS023	chr12:30676587|30680482:-	IPO8	importin 8	protein coding gene	no	ENST00000256079.8	19.980	16.250	12.716	0.886(8493)	0.97(681)	0.966(16799)	non tumor-specific	nAS	yes
UN_MCCC1_LS0015	chr3:183017876|183018108:+	MCCC1	methylcrotonoyl-CoA carboxylase 1	protein coding gene	no	.	3.998	0.618	0.000	0.015(142)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CDC14B_LS0022	chr9:96534542|96538600:-	CDC14B	cell division cycle 14B	protein coding gene	no	.	1.254	0.154	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SNX13_LS032	chr7:17891635|17897334:-	SNX13	sorting nexin 13	protein coding gene	no	ENST00000444712.5	0.017	0.018	0.588	0.18(1721)	0.275(193)	0.007(126)	non tumor-specific	exon_skip	yes
SLC38A9_LS046	chr5:55704434|55711452:-	SLC38A9	solute carrier family 38 member 9	protein coding gene	no	ENST00000513993.5;ENST00000513275.5;ENST00000502416.5;ENST00000507216.1	0.724	0.470	1.789	0.841(8055)	0.897(630)	0.745(12948)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RACK1_LS0099	chr5:181242305|181243734:+	RACK1	receptor for activated C kinase 1	protein coding gene	no	.	8.593	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ITGA9-AS1_LS004	chr3:37754052|37821014:-	ITGA9-AS1	ITGA9 antisense RNA 1	lncRNA gene	no	ENST00000630762.2;ENST00000438136.5	0.030	0.090	0.911	0.219(2101)	0.429(301)	0.299(5194)	non tumor-specific	nAS	yes
UN_DDX50_LS0001	chr10:68901471|68902051:+	DDX50	DExD-box helicase 50	protein coding gene	no	.	6.529	0.182	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AL137058.2_LS0010	chr13:52622264|52632422:+	AL137058.2	-	lncRNA gene	no	.	1.118	0.067	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_KRT17P3_LS0007	chr17:30571648|30571693:+	KRT17P3	keratin 17 pseudogene 3	pseudogene	no	.	10.837	2.735	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RALGAPA1_LS0003	chr14:35542029|35548508:-	RALGAPA1	Ral GTPase activating protein catalytic subunit alpha 1	protein coding gene	no	.	8.150	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
KARS_LS002	chr16:75627989|75644283:-	KARS	lysyl-tRNA synthetase 1	protein coding gene	no	ENST00000568378.5	0.287	0.202	0.652	0.871(8341)	0.886(622)	0.141(2444)	non tumor-specific	nAS	yes
AJ009632.2_LS019	chr21:15560733|15561201:-	AJ009632.2	-	lncRNA gene	no	ENST00000634853.1	1.470	0.000	0.848	0(1)	0(0)	0.001(24)	non tumor-specific	nAS	yes
UN_AC106782.1_LS0005	chr16:30205916|30206123:+	AC106782.1	-	pseudogene	no	.	1.315	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
EHBP1_LS031	chr2:62955660|62979191:+	EHBP1	EH domain binding protein 1	protein coding gene	no	ENST00000422032.1	0.418	0.648	1.982	0.806(7721)	0.846(594)	0.781(13584)	non tumor-specific	alt_3prime	yes
UN_PARK7_LS0012	chr1:7962875|7969345:+	PARK7	Parkinsonism associated deglycase	protein coding gene	yes	.	49.616	4.723	0.000	0.019(186)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ZFR_LS016	chr5:32400203|32403106:-	ZFR	zinc finger RNA binding protein	protein coding gene	no	ENST00000265069.12	69.796	49.794	45.191	0.972(9309)	0.987(693)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
PKMYT1_LS001	chr16:2968515|2968908:-	PKMYT1	protein kinase, membrane associated tyrosine/threonine 1	protein coding gene	no	ENST00000572832.1	0.271	0.049	0.763	0.11(1052)	0.024(17)	0.034(598)	non tumor-specific	intron_retention	yes
FOXP1_LS048	chr3:71299880|71493426:-	FOXP1	forkhead box P1	protein coding gene	yes	ENST00000649631.1	0.581	0.331	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	exon_skip	yes
UN_CWC25_UP_LS0004	chr17:38837240|38841515:-	CWC25	CWC25 spliceosome associated protein homolog	protein coding gene	no	.	2.266	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CDK16_LS038	chrX:47228644|47228735:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	.;.	10.313	3.258	0.000	0.086(821)	0.068(48)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_SEC24B_LS0037	chr4:109530464|109531389:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	.	5.282	1.668	0.000	0.011(105)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PLXNB2_LS0304	chr22:50295429|50303479:-	PLXNB2	plexin B2	protein coding gene	no	.	3.254	0.215	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SLC30A3_LS015	chr2:27275251|27275530:-	SLC30A3	solute carrier family 30 member 3	protein coding gene	no	ENST00000426924.5	0.560	0.006	0.894	0.008(76)	0.001(1)	0.049(845)	non tumor-specific	nAS	yes
RYR2_LS100	chr1:237793997|237795289:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7;ENST00000608590.5	5.298	5.447	9.545	0.254(2434)	0.379(266)	0.81(14080)	non tumor-specific	nAS	yes
ODAM_LS010	chr4:70200149|70200497:+	ODAM	odontogenic, ameloblast associated	protein coding gene	no	ENST00000510847.1	0.217	0.093	0.961	0.06(579)	0.148(104)	0.044(757)	non tumor-specific	exon_skip	yes
UN_FANCI_LS0017	chr15:89244653|89245756:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	.	1.266	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
NRF1_LS020	chr7:129717376|129727241:+	NRF1	nuclear respiratory factor 1	protein coding gene	yes	ENST00000393232.5;ENST00000223190.8;ENST00000311967.6;ENST00000393230.6;ENST00000353868.5	19.888	11.808	12.168	0.985(9437)	0.996(699)	0.977(16986)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MRPL23_LS002	chr11:1947578|1950899:+	MRPL23	mitochondrial ribosomal protein L23	protein coding gene	no	ENST00000462288.5	0.134	0.082	0.707	0.245(2346)	0.185(130)	0.1(1736)	non tumor-specific	nAS	yes
UN_POU6F1_LS0025	chr12:51206883|51210386:-	POU6F1	POU class 6 homeobox 1	protein coding gene	no	.	1.583	0.801	0.000	0.093(895)	0.171(120)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
BAIAP3_LS037	chr16:1346684|1347298:+	BAIAP3	BAI1 associated protein 3	protein coding gene	no	ENST00000564213.1	0.117	0.046	0.922	0.281(2690)	0.258(181)	0.232(4038)	non tumor-specific	exon_skip	yes
UN_TSNARE1_LS0060	chr8:142274863|142278282:-	TSNARE1	t-SNARE domain containing 1	protein coding gene	no	.	1.248	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PDLIM7_LS0010	chr5:177483659|177484108:+	PDLIM7	PDZ and LIM domain 7	protein coding gene	no	.	2.432	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
VWA3B_LS013	chr2:98128408|98133682:+	VWA3B	von Willebrand factor A domain containing 3B	protein coding gene	no	ENST00000465930.1	0.113	0.035	0.704	0.013(123)	0.011(8)	0.004(77)	non tumor-specific	alt_3prime	yes
UN_RABL6_LS0054	chr9:136833282|136833589:-	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	.	1.063	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
WIZ_LS020	chr19:15440715|15442676:-	WIZ	WIZ zinc finger	protein coding gene	no	ENST00000643092.1	3.347	2.203	0.000	0.173(1662)	0.425(298)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CROT_LS008	chr7:87361852|87369376:+	CROT	carnitine O-octanoyltransferase	protein coding gene	yes	ENST00000419147.6;ENST00000331536.7;ENST00000442291.1;ENST00000488850.1	14.745	17.848	6.844	0.928(8887)	0.986(692)	0.939(16322)	non tumor-specific	exon_skip	yes
UN_TMOD1_LS0012	chr9:97575486|97591291:+	TMOD1	tropomodulin 1	protein coding gene	no	.	4.317	1.866	0.000	0.077(742)	0.056(39)	0(0)	non tumor-specific	nAS	no
ADAMTSL1_LS007	chr9:18622369|18635943:+	ADAMTSL1	ADAMTS like 1	protein coding gene	no	ENST00000380548.8;ENST00000327883.11;ENST00000380566.8;ENST00000276935.6	3.322	3.008	2.975	0.278(2663)	0.573(402)	0.639(11113)	non tumor-specific	exon_skip	yes
PTPN22_LS022	chr1:113856441|113856548:-	PTPN22	protein tyrosine phosphatase non-receptor type 22	protein coding gene	no	ENST00000359785.9;ENST00000528414.5;ENST00000420377.6;ENST00000484147.5	3.793	1.325	1.437	0.415(3979)	0.466(327)	0.504(8762)	non tumor-specific	exon_skip;intron_retention	yes
UN_PTPRA_LS0074	chr20:3035941|3037165:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	14.258	3.707	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_SDK1_LS0061	chr7:3969520|3970805:-	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	.	0.712	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02266_UP_LS0003	chr4:145445436|145468479:-	LINC02266	long intergenic non-protein coding RNA 2266	lncRNA gene	no	.	2.212	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KNG1_LS0007	chr3:186725260|186739099:+	KNG1	kininogen 1	protein coding gene	no	.	271.941	165.127	0.000	0.007(63)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
CCDC30_LS037	chr1:42637378|42642473:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000477155.5;ENST00000340612.5;ENST00000428554.6;ENST00000507855.5;ENST00000471390.5;ENST00000342022.8	3.491	2.686	2.164	0.32(3069)	0.53(372)	0.772(13412)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KCTD9_LS0014	chr8:25440673|25440780:-	KCTD9	potassium channel tetramerization domain containing 9	protein coding gene	no	.	1.073	0.356	0.000	0.002(23)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_PIP4K2B_LS0054	chr17:38779720|38780452:-	PIP4K2B	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein coding gene	no	.	1.225	0.283	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
RPP38_LS018	chr10:15111786|15139759:+	RPP38	ribonuclease P/MRP subunit p38	protein coding gene	no	ENST00000451677.1	0.327	0.171	0.705	0.006(58)	0.004(3)	0.16(2773)	non tumor-specific	nAS	yes
SPRY2_LS001	chr13:80337756|80338733:-	SPRY2	sprouty RTK signaling antagonist 2	protein coding gene	yes	ENST00000377102.5	0.861	1.029	3.005	0.721(6909)	0.87(611)	0.863(15002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_VPS8_LS0054	chr3:184994063|184996321:+	VPS8	VPS8 subunit of CORVET complex	protein coding gene	no	.	6.775	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime	no
PUF60_LS007	chr8:143818075|143818193:-	PUF60	poly(U) binding splicing factor 60	protein coding gene	no	ENST00000526683.5;ENST00000453551.6;ENST00000313352.11;ENST00000456095.6;ENST00000349157.10;ENST00000527197.5;ENST00000524570.5;ENST00000526459.5;ENST00000527744.5;ENST00000531951.5;ENST00000529999.5;ENST00000528999.5;ENST00000531897.5	127.657	66.811	150.845	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TSN_LS001	chr2:121737185|121757240:+	TSN	translin	protein coding gene	no	ENST00000455432.5	0.132	0.183	0.739	0.137(1315)	0.185(130)	0.14(2436)	non tumor-specific	nAS	yes
LINC01226_LS007	chr1:31521063|31522025:+	LINC01226	long intergenic non-protein coding RNA 1226	lncRNA gene	no	ENST00000640157.1;ENST00000640623.1	1.839	0.120	0.884	0.095(909)	0.121(85)	0.057(992)	non tumor-specific	nAS	yes
UN_PRRC2B_LS0073	chr9:131477949|131478468:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	.	4.268	1.260	0.000	0.012(115)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_HLA-H_UP_LS0004	chr6:29725088|29829476:+	HLA-H	major histocompatibility complex, class I, H (pseudogene)	pseudogene	no	.	93.817	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DACT2_LS0026	chr6:168317457|168317971:-	DACT2	dishevelled binding antagonist of beta catenin 2	protein coding gene	no	.	3.147	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MTR_LS027	chr1:236862343|236863454:+	MTR	5-methyltetrahydrofolate-homocysteine methyltransferase	protein coding gene	no	ENST00000535889.5;ENST00000366577.9;ENST00000366576.3	12.738	10.300	10.936	0.871(8342)	0.949(666)	0.949(16503)	non tumor-specific	nAS	yes
UN_HNRNPA1_LS0029	chr12:54283967|54284240:+	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	.	124.186	24.109	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_TAB2_LS0022	chr6:149318015|149342685:+	TAB2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2	protein coding gene	no	.	1.185	1.087	0.000	0.598(5725)	0.735(516)	0(0)	non tumor-specific	exon_skip	no
UN_SIX5_LS0055	chr19:45767348|45768042:-	SIX5	SIX homeobox 5	protein coding gene	no	.	2.128	0.193	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC015712.2_LS004	chr15:100918213|100918804:-	AC015712.2	-	lncRNA gene	no	ENST00000560461.1	0.194	0.165	0.643	0.033(315)	0.03(21)	0.049(845)	non tumor-specific	nAS	yes
UN_OR5G3_UP_LS0001	chr11:56820539|56820747:-	OR5G3	olfactory receptor family 5 subfamily G member 3 (gene/pseudogene)	pseudogene	no	.	2.813	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
FBN2_LS005	chr5:128273968|128274567:-	FBN2	fibrillin 2	protein coding gene	no	ENST00000262464.8;ENST00000619499.4;ENST00000508053.5	10.929	2.455	1.776	0.494(4735)	0.34(239)	0.493(8572)	non tumor-specific	exon_skip	yes
UN_GSN_LS0089	chr9:121304859|121310684:+	GSN	gelsolin	protein coding gene	yes	.	1.926	1.329	0.000	0.007(67)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
CCDC18_LS018	chr1:93214966|93216636:+	CCDC18	coiled-coil domain containing 18	protein coding gene	no	ENST00000343253.11;ENST00000401026.7;ENST00000370276.5;ENST00000481180.5;ENST00000455267.1	2.296	0.813	1.545	0.319(3053)	0.12(84)	0.714(12404)	non tumor-specific	nAS	yes
SAGE1_LS011	chrX:135907841|135908089:+	SAGE1	sarcoma antigen 1	protein coding gene	no	ENST00000324447.7;ENST00000370709.3	7.214	0.528	1.013	0.053(508)	0.004(3)	0.041(704)	non tumor-specific	exon_skip	yes
UN_RPL13A_LS0050	chr19:49491088|49491430:-	RPL13A	ribosomal protein L13a	protein coding gene	no	.	123.242	41.280	0.000	0.138(1320)	0.053(37)	0(0)	non tumor-specific	nAS	no
INPPL1_LS022	chr11:72232336|72232626:+	INPPL1	inositol polyphosphate phosphatase like 1	protein coding gene	yes	ENST00000298229.6;ENST00000538751.5;ENST00000541756.5	80.634	44.556	61.737	0.983(9421)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AL358472.6_LS0014	chr1:153977207|153977286:+	AL358472.6	-	protein coding gene	no	.	1.508	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DONSON_LS0011	chr21:33578441|33579350:-	DONSON	DNA replication fork stabilization factor DONSON	protein coding gene	no	.	2.471	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	alt_3prime	no
FASTKD1_LS011	chr2:169544835|169546218:-	FASTKD1	FAST kinase domains 1	protein coding gene	no	ENST00000453153.6;ENST00000453929.6	29.325	15.203	15.539	0.984(9427)	0.99(695)	0.974(16936)	non tumor-specific	exon_skip	yes
UN_LRP10_LS0055	chr14:22875389|22875440:-	LRP10	LDL receptor related protein 10	protein coding gene	no	.	2.504	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CACNA1C-AS4_LS003	chr12:2222420|2223365:-	CACNA1C-AS4	CACNA1C antisense RNA 4	lncRNA gene	no	ENST00000544415.1	13.624	0.000	0.798	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
EMCN_LS006	chr4:100417141|100447533:-	EMCN	endomucin	protein coding gene	no	ENST00000305864.7	0.396	0.202	1.227	0.405(3882)	0.711(499)	0.452(7858)	non tumor-specific	exon_skip	yes
UN_ITGA10_LS0017	chr1:145902956|145904052:-	ITGA10	integrin subunit alpha 10	protein coding gene	no	.	0.685	0.468	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP281_UP_LS0006	chr9:31580107|31604347:+	RNA5SP281	RNA, 5S ribosomal pseudogene 281	no	no	.	4.979	0.000	0.000	0.01(96)	0(0)	0(0)	non tumor-specific	nAS	no
CLASRP_LS003	chr19:45040311|45052071:+	CLASRP	CLK4 associating serine/arginine rich protein	protein coding gene	no	ENST00000221455.7;ENST00000391953.8;ENST00000592056.5;ENST00000391952.7;ENST00000588936.5;ENST00000544944.6;ENST00000587112.1	44.392	20.602	89.268	0.991(9498)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PHKG1_LS0013	chr7:56082253|56082807:-	PHKG1	phosphorylase kinase catalytic subunit gamma 1	protein coding gene	no	.	3.867	1.539	0.000	0.055(528)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
RGS7_LS021	chr1:241098762|241355699:-	RGS7	regulator of G protein signaling 7	protein coding gene	no	ENST00000348120.6;ENST00000366563.5;ENST00000366564.5;ENST00000366565.5	3.644	3.338	4.022	0.127(1220)	0.058(41)	0.296(5140)	non tumor-specific	exon_skip	yes
UN_PKP3_LS0103	chr11:398309|398339:-	PKP3	plakophilin 3	protein coding gene	no	.	3.244	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
AXDND1_LS021	chr1:179445204|179449071:+	AXDND1	axonemal dynein light chain domain containing 1	protein coding gene	no	ENST00000461179.2	2.656	0.000	0.774	0.002(23)	0(0)	0.116(2013)	non tumor-specific	exon_skip	yes
NUCB1_LS009	chr19:48904454|48905753:+	NUCB1	nucleobindin 1	protein coding gene	no	ENST00000405315.8;ENST00000407032.5;ENST00000452087.5;ENST00000443560.1;ENST00000411700.5;ENST00000451312.5;ENST00000424608.1;ENST00000405315.8;ENST00000407032.5;ENST00000452087.5;ENST00000443560.1;ENST00000411700.5;ENST00000451312.5;ENST00000424608.1	316.265	250.416	231.321	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AP001476.1_LS001	chr21:46037898|46038457:+	AP001476.1	-	lncRNA gene	no	ENST00000451618.1	0.413	0.058	0.709	0.058(552)	0.064(45)	0.106(1837)	non tumor-specific	nAS	yes
UN_AGR2_UP_LS0002	chr7:16846817|16847473:-	AGR2	anterior gradient 2, protein disulphide isomerase family member	protein coding gene	no	.	1.335	0.116	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
INTS3_LS035	chr1:153770733|153771796:+	INTS3	integrator complex subunit 3	protein coding gene	yes	ENST00000318967.6;ENST00000435409.6;ENST00000481797.5;ENST00000512605.4;ENST00000476843.5;ENST00000503133.5;ENST00000368670.5;ENST00000368669.1	144.542	75.153	136.370	0.997(9557)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
NINL_LS031	chr20:25510740|25512834:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5	8.453	7.565	4.760	0.782(7488)	0.868(609)	0.895(15554)	non tumor-specific	exon_skip	yes
UN_SH3BP5_LS0053	chr3:15304231|15330447:-	SH3BP5	SH3 domain binding protein 5	protein coding gene	no	.	1.904	0.690	0.000	0.011(104)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PDE8B_LS008	chr5:77325729|77328998:+	PDE8B	phosphodiesterase 8B	protein coding gene	no	ENST00000505926.5;ENST00000340978.7;ENST00000346042.7;ENST00000264917.9;ENST00000342343.8;ENST00000333194.8;ENST00000502945.1;ENST00000503963.1	6.097	7.740	7.013	0.377(3613)	0.761(534)	0.792(13773)	non tumor-specific	exon_skip	yes
UN_AC013489.1_LS0008	chr15:88464916|88465587:-	AC013489.1	-	protein coding gene	no	.	23.947	6.895	0.000	0.005(44)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_AC247036.1_UP_LS0118	chr14:106005521|106185325:+	AC247036.1	-	lncRNA gene	no	.	302.398	1.344	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC006453.4_UP_LS0139	chr2:88947520|88978691:+	AC006453.4	-	pseudogene	no	.	5.339	1.588	0.000	0.003(32)	0.01(7)	0(0)	non tumor-specific	nAS	no
NUP43_LS012	chr6:149743715|149745940:-	NUP43	nucleoporin 43	protein coding gene	no	ENST00000340413.6;ENST00000367404.8;ENST00000403890.7;ENST00000367402.6;ENST00000543637.1;ENST00000463048.3	25.395	13.831	11.556	0.956(9157)	0.977(686)	0.967(16802)	non tumor-specific	exon_skip	yes
SERPINB6_LS024	chr6:2959342|2971248:-	SERPINB6	serpin family B member 6	protein coding gene	no	ENST00000643098.1	8.225	5.809	7.344	0.882(8450)	0.922(647)	0.961(16701)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_RGPD4_LS0003	chr2:107872928|107876267:+	RGPD4	RANBP2 like and GRIP domain containing 4	protein coding gene	no	.	3.318	0.689	0.000	0.004(42)	0.007(5)	0(0)	non tumor-specific	nAS	no
CCDC141_LS017	chr2:178888668|178905329:-	CCDC141	coiled-coil domain containing 141	protein coding gene	no	ENST00000443758.6;ENST00000446116.5;ENST00000409284.1	2.812	0.651	0.915	0.042(407)	0.138(97)	0.268(4666)	non tumor-specific	nAS	yes
PICK1_LS025	chr22:38074451|38074864:+	PICK1	protein interacting with PRKCA 1	protein coding gene	no	ENST00000404072.7;ENST00000484021.5;ENST00000356976.7	46.220	26.816	56.090	0.971(9307)	0.964(677)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TUT7_LS0003	chr9:86288744|86297125:-	TUT7	terminal uridylyl transferase 7	protein coding gene	no	.	2.959	0.898	0.000	0.023(221)	0.06(42)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SYN1_LS001	chrX:47572961|47574002:-	SYN1	synapsin I	protein coding gene	no	ENST00000340666.5	2.982	5.783	2.208	0.48(4600)	0.303(213)	0.782(13595)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL354950.2_UP_LS0004	chr10:129813788|129830365:+	AL354950.2	-	lncRNA gene	no	.	2.766	0.391	0.000	0.015(142)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_VCL_LS0064	chr10:74118187|74118280:-	VCL	vinculin	protein coding gene	no	.	3.145	1.570	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
ITGA5_LS022	chr12:54405374|54405664:-	ITGA5	integrin subunit alpha 5	protein coding gene	yes	ENST00000552564.5;ENST00000293379.8;ENST00000435631.6;ENST00000553071.1	44.481	36.826	59.145	0.96(9193)	0.989(694)	0.968(16828)	non tumor-specific	intron_retention	yes
HDLBP_LS005	chr2:241230176|241233853:-	HDLBP	high density lipoprotein binding protein	protein coding gene	no	ENST00000373292.8	3.468	2.026	3.300	0.906(8681)	0.946(664)	0.935(16244)	non tumor-specific	nAS	yes
UN_ITGA6_UP_LS0003	chr2:172240075|172323350:+	ITGA6	integrin subunit alpha 6	protein coding gene	no	.	3.776	0.331	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
IVD_LS001	chr15:40405971|40407636:+	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	ENST00000610693.4;ENST00000487418.6	38.172	40.803	25.769	0.956(9159)	0.962(675)	0.977(16988)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BGN_LS0257	chrX:153509171|153509327:-	BGN	biglycan	protein coding gene	no	.	12.643	0.433	0.000	0.012(111)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR45_LS036	chrX:49076825|49077643:-	WDR45	WD repeat domain 45	protein coding gene	no	ENST00000474053.6	0.064	0.077	0.757	0.429(4109)	0.318(223)	0.32(5565)	non tumor-specific	alt_3prime;intron_retention	yes
SCT_LS003	chr11:626989|627073:-	SCT	secretin	protein coding gene	no	ENST00000176195.3	0.447	0.223	1.160	0.209(1998)	0.178(125)	0.296(5138)	non tumor-specific	nAS	yes
MEF2C_LS041	chr5:88823930|88827036:-	MEF2C	myocyte enhancer factor 2C	protein coding gene	yes	ENST00000631026.2	0.130	0.109	0.710	0.09(867)	0.104(73)	0.158(2742)	non tumor-specific	alt_3prime	yes
TOLLIP_LS016	chr11:1298564|1309466:-	TOLLIP	toll interacting protein	protein coding gene	no	ENST00000527085.1	0.057	0.236	1.019	0.448(4294)	0.45(316)	0.535(9291)	non tumor-specific	alt_3prime;exon_skip	yes
LPA_LS011	chr6:160557571|160577136:-	LPA	lipoprotein(a)	protein coding gene	no	ENST00000316300.9	6.788	9.899	0.938	0.03(283)	0.094(66)	0.091(1582)	non tumor-specific	nAS	yes
UN_AC079447.1_LS0017	chr2:99155143|99155482:+	AC079447.1	-	protein coding gene	no	.	0.547	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WASHC2A_LS0007	chr10:50080931|50082664:+	WASHC2A	WASH complex subunit 2A	protein coding gene	no	.	1.437	0.932	0.000	0.009(91)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ACTB_LS0034	chr7:5527281|5527816:+	ACTB	actin beta	protein coding gene	no	.	0.370	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CDC16_LS013	chr13:114246049|114246931:+	CDC16	cell division cycle 16	protein coding gene	no	ENST00000360383.7;ENST00000628084.2;ENST00000650489.1;ENST00000356221.7;ENST00000375310.5;ENST00000252457.9;ENST00000375308.5;ENST00000252458.6;ENST00000484907.1;ENST00000494581.1	67.924	40.175	81.160	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
KYAT1_LS006	chr9:128835667|128835779:-	KYAT1	kynurenine aminotransferase 1	protein coding gene	no	ENST00000462722.5;ENST00000436267.6;ENST00000302586.7;ENST00000320665.10;ENST00000483599.5	15.650	9.700	14.832	0.96(9195)	0.986(692)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
MYL9_LS001	chr20:36541561|36544583:+	MYL9	myosin light chain 9	protein coding gene	no	.;.;.	2.489	0.709	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
KIAA1109_LS034	chr4:122238350|122239516:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000424425.5;ENST00000495260.5	6.556	5.710	5.278	0.495(4745)	0.769(540)	0.915(15910)	non tumor-specific	alt_3prime	yes
SALL4_LS010	chr20:51792926|51801491:-	SALL4	spalt like transcription factor 4	protein coding gene	yes	.;.	1.183	0.111	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ZBTB7C_LS032	chr18:48185995|48408358:-	ZBTB7C	zinc finger and BTB domain containing 7C	protein coding gene	yes	ENST00000591279.5	0.102	0.030	0.670	0.056(536)	0.058(41)	0.043(740)	non tumor-specific	exon_skip	yes
MACF1_LS115	chr1:39455097|39458370:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000567887.5;ENST00000372915.7;ENST00000361689.6;ENST00000564288.5;ENST00000372925.6;ENST00000289893.8;ENST00000360115.8	136.866	113.218	127.759	0.945(9055)	0.989(694)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MIER1_LS0023	chr1:66970961|66975382:-	MIER1	MIER1 transcriptional regulator	protein coding gene	no	.	2.161	0.059	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01663_LS001	chr22:18873665|18875879:-	LINC01663	family with sequence similarity 230 member F	lncRNA gene	no	ENST00000614596.2	0.969	0.000	0.687	0(4)	0(0)	0.003(57)	non tumor-specific	nAS	yes
UN_BCL11A_LS0018	chr2:60471050|60471353:+	BCL11A	BAF chromatin remodeling complex subunit BCL11A	protein coding gene	yes	.	3.067	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAT3_LS0024	chr11:92876921|92880731:+	FAT3	FAT atypical cadherin 3	protein coding gene	no	.	0.980	0.257	0.000	0.018(171)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
PPP4R1_LS004	chr18:9550315|9553322:-	PPP4R1	protein phosphatase 4 regulatory subunit 1	protein coding gene	no	ENST00000579609.5	0.337	0.279	0.714	0.642(6148)	0.648(455)	0.211(3659)	non tumor-specific	alt_3prime	yes
UN_UNKL_LS0001	chr16:1363215|1363413:+	UNKL	unk like zinc finger	protein coding gene	no	.	2.958	0.975	0.000	0.142(1359)	0.094(66)	0(0)	non tumor-specific	nAS	no
FLOT1_LS030	chr6:30741704|30742147:-	FLOT1	flotillin 1	protein coding gene	no	.;.	16.287	12.658	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_AC092892.1_UP_LS0010	chr3:112665187|112756455:+	AC092892.1	-	lncRNA gene	no	.	1.810	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC133552.1_UP_LS0005	chr16:24845027|24846232:+	AC133552.1	-	pseudogene	no	.	0.799	1.863	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_COL6A2_LS0208	chr21:46132230|46132442:-	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	.	1.651	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC127502.1_LS0025	chr15:30484686|30488640:+	AC127502.1	-	pseudogene	no	.	4.099	0.813	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ACTG1_LS0037	chr17:81510088|81510136:+	ACTG1	actin gamma 1	protein coding gene	no	.	74.941	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHV1OR16-3_UP_LS0001	chr16:31961974|32051979:+	IGHV1OR16-3	immunoglobulin heavy variable 1/OR16-3 (pseudogene)	no	no	.	3.937	6.245	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
DMRT2_LS008	chr9:1053108|1053722:+	DMRT2	doublesex and mab-3 related transcription factor 2	protein coding gene	no	ENST00000634526.1	5.857	1.524	0.909	0.006(59)	0.04(28)	0.046(802)	non tumor-specific	alt_5prime	yes
UN_NDST1_LS0064	chr5:150541670|150542848:+	NDST1	N-deacetylase and N-sulfotransferase 1	protein coding gene	no	.	2.593	0.793	0.000	0.008(77)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DUSP12_LS003	chr1:161750088|161751668:+	DUSP12	dual specificity phosphatase 12	protein coding gene	yes	.;.;.	1.121	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
APOO_LS016	chrX:23880952|23907694:-	APOO	apolipoprotein O	protein coding gene	no	ENST00000379226.8;ENST00000490078.2;ENST00000379226.8;ENST00000490078.2	22.845	14.415	11.264	0.957(9165)	0.973(683)	0.976(16958)	non tumor-specific	alt_3prime;exon_skip	yes
TUBGCP4_LS009	chr15:43380163|43383303:+	TUBGCP4	tubulin gamma complex associated protein 4	protein coding gene	no	ENST00000260383.11;ENST00000564079.5;ENST00000561691.5;ENST00000564511.1;ENST00000563412.1	12.308	6.280	7.028	0.952(9124)	0.983(690)	0.962(16717)	non tumor-specific	exon_skip	yes
AC007192.1_LS019	chr19:18172877|18173804:+	AC007192.1	-	protein coding gene	no	ENST00000593731.1	0.832	1.420	0.660	0.1(960)	0.115(81)	0.03(530)	non tumor-specific	nAS	yes
UN_FYB2_LS0025	chr1:56797913|56800046:+	FYB2	FYN binding protein 2	protein coding gene	no	.	1.170	1.353	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM107B_LS024	chr10:14530515|14667634:-	FAM107B	family with sequence similarity 107 member B	protein coding gene	no	ENST00000181796.6	0.393	0.038	0.662	0.023(216)	0.016(11)	0.018(309)	non tumor-specific	exon_skip	yes
BAZ2B_LS034	chr2:159400664|159404849:-	BAZ2B	bromodomain adjacent to zinc finger domain 2B	protein coding gene	no	ENST00000392782.5;ENST00000392783.6;ENST00000343439.9;ENST00000482501.5	3.282	2.874	7.739	0.769(7367)	0.929(652)	0.962(16713)	non tumor-specific	exon_skip	yes
WASHC1_LS013	chr9:52614|73683:-	WASHC1	WASH complex subunit 1	protein coding gene	no	ENST00000642633.1	0.682	0.531	0.000	0.012(111)	0.127(89)	0(0)	non tumor-specific	nAS	yes
MYO1F_LS022	chr19:8548317|8549595:-	MYO1F	myosin IF	protein coding gene	no	ENST00000613525.4	0.902	0.257	1.788	0.109(1047)	0.138(97)	0.684(11884)	non tumor-specific	nAS	yes
ATF2_LS020	chr2:175114868|175117990:-	ATF2	glial cell derived neurotrophic factor	protein coding gene	no	ENST00000264110.6;ENST00000345739.9;ENST00000426833.7;ENST00000409635.5;ENST00000435004.6;ENST00000428760.5;ENST00000392544.5;ENST00000417080.5;ENST00000456655.5;ENST00000421438.5;ENST00000429579.5;ENST00000415955.5;ENST00000437522.5;ENST00000409833.5	32.647	25.280	19.787	0.952(9117)	0.983(690)	0.978(16995)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
BLM_LS014	chr15:90765414|90766910:+	BLM	BLM RecQ like helicase	protein coding gene	yes	ENST00000355112.7;ENST00000648453.1;ENST00000560509.5;ENST00000559724.5;ENST00000559426.5	6.772	1.253	1.994	0.704(6746)	0.342(240)	0.683(11869)	non tumor-specific	exon_skip	yes
UN_MAX_LS0023	chr14:65065602|65066729:-	MAX	MYC associated factor X	protein coding gene	yes	.	1.011	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SRC_LS003	chr20:37346229|37365204:+	SRC	SRC proto-oncogene, non-receptor tyrosine kinase	protein coding gene	yes	.;.	1.404	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SATB1-AS1_LS002	chr3:18463545|18464287:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000414198.5;ENST00000598149.5;ENST00000610002.4;ENST00000438418.7	4.258	1.359	1.780	0.371(3553)	0.387(272)	0.491(8538)	non tumor-specific	nAS	yes
UGGT1_LS012	chr2:128115220|128116265:+	UGGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein coding gene	no	ENST00000438277.5;ENST00000376723.7;ENST00000259253.10	12.765	6.857	3.646	0.849(8134)	0.926(650)	0.891(15485)	non tumor-specific	alt_5prime	yes
UN_AL512324.3_LS0008	chr10:45194254|45197984:-	AL512324.3	-	pseudogene	no	.	1.206	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GRB10_LS0045	chr7:50710990|50726013:-	GRB10	growth factor receptor bound protein 10	protein coding gene	no	.	1.966	0.282	0.000	0.031(294)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
CFAP44_LS031	chr3:113363532|113379306:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	ENST00000488854.6	0.212	0.007	0.905	0.016(154)	0.01(7)	0.024(415)	non tumor-specific	exon_skip	yes
CNOT2_LS033	chr12:70311017|70329423:+	CNOT2	CCR4-NOT transcription complex subunit 2	protein coding gene	no	ENST00000551873.5	0.039	0.045	0.779	0.371(3552)	0.369(259)	0.276(4792)	non tumor-specific	exon_skip;mutex_exons	yes
CTSA_LS031	chr20:45897040|45897717:+	CTSA	cathepsin A	protein coding gene	no	ENST00000606788.5;ENST00000372484.7;ENST00000354880.9;ENST00000646241.2;ENST00000191018.9;ENST00000372459.6;ENST00000493522.6;ENST00000607187.1	428.564	250.979	184.438	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DNAH17_LS065	chr17:78501873|78502591:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6	2.671	0.820	0.804	0.052(503)	0.014(10)	0.069(1208)	non tumor-specific	alt_5prime;exon_skip	yes
ERVK13-1_LS008	chr16:2671231|2671345:-	ERVK13-1	endogenous retrovirus group K13 member 1	lncRNA gene	no	ENST00000566343.5	0.241	0.110	1.377	0.226(2165)	0.225(158)	0.638(11093)	non tumor-specific	nAS	yes
LINC01849_LS001	chr2:100607325|100609003:+	LINC01849	long intergenic non-protein coding RNA 1849	lncRNA gene	no	ENST00000424342.1	0.155	0.004	0.832	0.004(41)	0.001(1)	0.009(161)	non tumor-specific	nAS	yes
NUCB2_LS045	chr11:17337083|17349345:+	NUCB2	nucleobindin 2	protein coding gene	no	.;.	3.139	0.260	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SEC14L1_LS233	chr17:77215870|77216284:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	6.358	1.076	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
WDR46_LS009	chr6:33286894|33287091:-	WDR46	WD repeat domain 46	protein coding gene	no	ENST00000374617.8;ENST00000489905.1;ENST00000444176.1	78.291	32.361	48.619	0.996(9545)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
PPP5C_LS005	chr19:46376574|46383780:+	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	ENST00000391919.1	1.408	1.052	2.226	0.725(6949)	0.697(489)	0.806(14014)	non tumor-specific	alt_3prime;exon_skip	yes
ADAMTSL1_LS017	chr9:18707048|18721536:+	ADAMTSL1	ADAMTS like 1	protein coding gene	no	ENST00000380548.8;ENST00000276935.6;ENST00000380559.7	4.137	3.459	2.505	0.295(2830)	0.608(427)	0.63(10943)	non tumor-specific	nAS	yes
UN_NFYA_LS0025	chr6:41084192|41090204:+	NFYA	nuclear transcription factor Y subunit alpha	protein coding gene	no	.	1.191	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
RANBP3_LS010	chr19:5928087|5931404:-	RANBP3	RAN binding protein 3	protein coding gene	no	ENST00000340578.10;ENST00000034275.12;ENST00000587411.5;ENST00000591736.5;ENST00000590953.5;ENST00000588879.5	28.729	16.371	38.657	0.991(9495)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RAB13_LS0002	chr1:153986237|153986289:+	RAB13	RAB13, member RAS oncogene family	protein coding gene	no	.	1.982	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BDH1_LS0050	chr3:197516337|197522640:-	BDH1	3-hydroxybutyrate dehydrogenase 1	protein coding gene	no	.	7.780	0.322	0.000	0.009(88)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RN7SL446P_UP_LS0003	chr4:152295262|152297696:-	RN7SL446P	RNA, 7SL, cytoplasmic 446, pseudogene	small non-coding RNA gene	no	.	1.858	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EIF3D_LS0031	chr22:36512826|36516478:-	EIF3D	eukaryotic translation initiation factor 3 subunit D	protein coding gene	no	.	80.404	0.101	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TNFRSF11A_LS0017	chr18:62366760|62368664:+	TNFRSF11A	TNF receptor superfamily member 11a	protein coding gene	no	.	3.079	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AP001178.2_LS001	chr18:706796|707597:+	AP001178.2	-	lncRNA gene	no	ENST00000580007.1	0.456	0.000	0.721	0(4)	0(0)	0.001(12)	non tumor-specific	nAS	yes
UN_NME4_LS0068	chr16:400338|400491:-	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	.	11.269	0.442	0.000	0.005(49)	0.003(2)	0(0)	non tumor-specific	nAS	no
RECQL5_LS033	chr17:75651265|75658298:-	RECQL5	RecQ like helicase 5	protein coding gene	no	ENST00000423245.6;ENST00000317905.9;ENST00000578201.5;ENST00000582464.5;ENST00000420326.6;ENST00000340830.9;ENST00000584999.1;ENST00000580078.1	19.948	8.681	16.633	0.984(9425)	0.987(693)	0.978(17006)	non tumor-specific	exon_skip	yes
UN_AC097359.3_UP_LS0013	chr3:37205984|37209512:+	AC097359.3	-	lncRNA gene	no	.	3.052	0.669	0.000	0.013(124)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ME1_LS0015	chr6:83392359|83392599:+	ME1	protocadherin beta 16	protein coding gene	no	.	1.806	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LSR_LS0064	chr19:35266426|35266455:-	LSR	lipolysis stimulated lipoprotein receptor	protein coding gene	no	.	2.482	1.595	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
CSMD3_LS062	chr8:112829789|112859145:-	CSMD3	CUB and Sushi multiple domains 3	protein coding gene	no	ENST00000343508.7;ENST00000297405.9;ENST00000455883.2	4.536	0.175	1.554	0.04(380)	0.006(4)	0.161(2803)	non tumor-specific	nAS	yes
UN_RNU6-694P_UP_LS0005	chr9:4544916|4600653:-	RNU6-694P	RNA, U6 small nuclear 694, pseudogene	small non-coding RNA gene	no	.	1.312	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
MYLK3_LS001	chr16:46707763|46709539:-	MYLK3	myosin light chain kinase 3	protein coding gene	no	ENST00000394809.8;ENST00000536476.5;ENST00000565182.5;ENST00000562104.1	0.941	1.131	1.240	0.147(1412)	0.296(208)	0.339(5887)	non tumor-specific	nAS	yes
IFRD2_LS024	chr3:50290679|50292217:-	IFRD2	interferon related developmental regulator 2	protein coding gene	no	ENST00000417626.6;ENST00000436390.5;ENST00000474556.5;ENST00000414734.5;ENST00000489569.1;ENST00000462001.1	18.331	11.711	38.714	0.99(9482)	0.996(699)	0.979(17018)	non tumor-specific	nAS	yes
ORC5_LS006	chr7:104168525|104183943:-	ORC5	origin recognition complex subunit 5	protein coding gene	no	ENST00000297431.8;ENST00000422497.5;ENST00000447452.6	30.183	15.108	16.662	0.988(9467)	0.997(700)	0.976(16965)	non tumor-specific	exon_skip	yes
TRPM7_LS043	chr15:50663046|50686531:-	TRPM7	transient receptor potential cation channel subfamily M member 7	protein coding gene	no	ENST00000646667.1;ENST00000313478.11;ENST00000560955.5	6.158	5.011	4.894	0.762(7305)	0.913(641)	0.89(15477)	non tumor-specific	exon_skip	yes
UN_RN7SL447P_UP_LS0013	chr3:193829975|193833639:-	RN7SL447P	RNA, 7SL, cytoplasmic 447, pseudogene	small non-coding RNA gene	no	.	1.318	0.529	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF850_LS005	chr19:36762431|36762595:-	ZNF850	zinc finger protein 850	protein coding gene	no	ENST00000589390.5;ENST00000614887.4;ENST00000591344.1	1.838	0.508	0.957	0.322(3081)	0.238(167)	0.491(8537)	non tumor-specific	nAS	yes
TENM1_LS038	chrX:124705251|124736957:-	TENM1	teneurin transmembrane protein 1	protein coding gene	no	ENST00000371130.7;ENST00000422452.2	2.931	0.719	1.062	0.111(1064)	0.036(25)	0.377(6548)	non tumor-specific	nAS	yes
UN_LAMB3_LS0047	chr1:209627571|209628090:+	LAMB3	laminin subunit beta 3	protein coding gene	no	.	6.813	1.691	0.000	0.015(148)	0.011(8)	0(0)	non tumor-specific	nAS	no
RYK_LS008	chr3:134176039|134183002:-	RYK	receptor like tyrosine kinase	protein coding gene	no	ENST00000486725.1;ENST00000481382.1	1.982	1.136	3.466	0.909(8705)	0.875(614)	0.896(15574)	non tumor-specific	exon_skip	yes
PTPRK_LS006	chr6:127981289|127982831:-	PTPRK	protein tyrosine phosphatase receptor type K	protein coding gene	yes	ENST00000368226.8;ENST00000532331.5;ENST00000368213.9;ENST00000368210.7;ENST00000368215.7;ENST00000368207.7	47.919	39.430	26.482	0.958(9175)	0.994(698)	0.951(16528)	non tumor-specific	exon_skip	yes
UN_KAZN_LS0038	chr1:14180592|14496668:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	2.816	0.141	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	nAS	no
FCN2_LS002	chr9:134880921|134883302:+	FCN2	ficolin 2	protein coding gene	no	ENST00000350339.3	0.402	0.541	1.073	0.057(546)	0.151(106)	0.096(1665)	non tumor-specific	exon_skip	yes
ZCCHC17_LS004	chr1:31297075|31319109:+	ZCCHC17	zinc finger CCHC-type containing 17	protein coding gene	no	.;.	2.938	0.095	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
ISX_LS002	chr22:35067316|35082518:+	ISX	intestine specific homeobox	protein coding gene	no	ENST00000404699.6;ENST00000308700.6	7.217	9.609	3.000	0.124(1192)	0.115(81)	0.057(987)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SKIL_LS0023	chr3:170381341|170382302:+	SKIL	SKI like proto-oncogene	protein coding gene	yes	.	2.275	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_FRG1GP_UP_LS0032	chr22:11832915|11859236:+	FRG1GP	FSHD region gene 1 family member G, pseudogene	pseudogene	no	.	1.686	0.159	0.000	0.01(97)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SUMO2P4_UP_LS0001	chr5:69076684|69282485:-	SUMO2P4	SUMO2 pseudogene 4	pseudogene	no	.	2.867	0.131	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
CEP41_LS024	chr7:130428018|130440934:-	CEP41	centrosomal protein 41	protein coding gene	no	ENST00000541543.5;ENST00000223208.9;ENST00000484549.5;ENST00000343969.9;ENST00000471201.5;ENST00000498527.5;ENST00000489512.5;ENST00000616628.1;ENST00000495702.5;ENST00000334451.6	4.050	1.955	3.971	0.946(9063)	0.95(667)	0.939(16320)	non tumor-specific	nAS	yes
GOLGA8K_LS014	chr15:32398985|32399248:-	GOLGA8K	golgin A8 family member K	protein coding gene	no	ENST00000512626.2	0.549	0.164	0.670	0.054(518)	0.081(57)	0.053(916)	non tumor-specific	nAS	yes
UN_PRSS38_UP_LS0007	chr1:227788899|227789148:+	PRSS38	serine protease 38	protein coding gene	no	.	1.111	0.262	0.000	0.007(69)	0.011(8)	0(0)	non tumor-specific	nAS	no
RHPN1_LS001	chr8:143369047|143375553:+	RHPN1	rhophilin Rho GTPase binding protein 1	protein coding gene	no	ENST00000289013.10;ENST00000522335.5	11.836	4.681	8.227	0.901(8629)	0.812(570)	0.922(16025)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LIPG_LS0004	chr18:49565498|49569437:+	LIPG	lipase G, endothelial type	protein coding gene	no	.	1.709	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
SYN2_LS017	chr3:12187612|12190490:+	SYN2	synapsin II	protein coding gene	no	ENST00000621198.4;ENST00000439861.5	4.772	7.028	5.604	0.221(2122)	0.452(317)	0.871(15132)	non tumor-specific	nAS	yes
PSAT1_LS006	chr9:78308583|78317676:+	PSAT1	phosphoserine aminotransferase 1	protein coding gene	no	ENST00000347159.6;ENST00000376588.3	86.455	47.958	13.161	0.956(9164)	0.957(672)	0.92(15988)	non tumor-specific	exon_skip	yes
UN_SLC9A9_LS0039	chr3:143620748|143654696:+	SLC9A9	solute carrier family 9 member A9	protein coding gene	no	.	2.339	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
BDNF_LS005	chr11:27658585|27699483:-	BDNF	brain derived neurotrophic factor	protein coding gene	no	ENST00000533131.5	0.075	0.000	0.678	0.001(5)	0(0)	0.018(314)	non tumor-specific	alt_5prime	yes
UN_MT-ND4_LS0041	chrM:10968|11045:-	MT-ND4	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4	protein coding gene	no	.	354.309	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SYNE1_LS182	chr6:152636805|152637189:-	SYNE1	spectrin repeat containing nuclear envelope protein 1	protein coding gene	no	ENST00000367255.9;ENST00000341594.9;ENST00000537750.5	0.323	0.102	0.794	0.009(84)	0.075(53)	0.205(3572)	non tumor-specific	exon_skip	yes
UN_DNAJC5_LS0081	chr20:63932828|63932883:-	DNAJC5	DnaJ heat shock protein family (Hsp40) member C5	protein coding gene	no	.	2.699	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ID2-AS1_LS0011	chr2:8676029|8676185:-	ID2-AS1	ID2 antisense RNA 1	lncRNA gene	no	.	0.885	0.133	0.000	0.013(120)	0.01(7)	0(0)	non tumor-specific	nAS	no
FOCAD-AS1_LS001	chr9:20683541|20683875:-	FOCAD-AS1	FOCAD antisense RNA 1	lncRNA gene	no	ENST00000445051.1	0.397	0.202	0.823	0.172(1647)	0.226(159)	0.183(3189)	non tumor-specific	nAS	yes
PER3_LS006	chr1:7785586|7788083:+	PER3	period circadian regulator 3	protein coding gene	no	.;.	2.991	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BCAS1_LS0016	chr20:53950094|53961595:+	BCAS1	brain enriched myelin associated protein 1	protein coding gene	no	.	1.418	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NUDT5_LS0008	chr10:12167811|12170820:-	NUDT5	nudix hydrolase 5	protein coding gene	no	.	4.326	1.088	0.000	0.011(103)	0.014(10)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SLC1A2_LS008	chr11:35265758|35280867:-	SLC1A2	solute carrier family 1 member 2	protein coding gene	no	ENST00000278379.8;ENST00000642769.1;ENST00000479543.2;ENST00000642171.1;ENST00000395753.6;ENST00000395750.6;ENST00000644459.1;ENST00000643522.1;ENST00000645303.1;ENST00000644050.1;ENST00000644779.1;ENST00000645634.1;ENST00000643000.1;ENST00000644299.1;ENST00000645194.1;ENST00000642448.1;ENST00000646080.1;ENST00000644868.1;ENST00000647104.1;ENST00000643134.1;ENST00000531628.2;ENST00000643454.1;ENST00000643305.1;ENST00000646099.1;ENST00000647372.1;ENST00000642578.1;ENST00000646167.1	4.413	6.586	2.016	0.159(1525)	0.168(118)	0.365(6350)	non tumor-specific	exon_skip	yes
UN_GTF3C2_LS0005	chr2:27326566|27326589:+	GTF3C2	general transcription factor IIIC subunit 2	protein coding gene	no	.	3.252	1.345	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
BCL2L2_LS003	chr14:23306894|23307192:+	BCL2L2	BCL2 like 2	protein coding gene	no	ENST00000250405.9	6.380	7.549	47.235	0.942(9028)	0.964(677)	0.975(16943)	non tumor-specific	alt_5prime;intron_retention	yes
PPP2R3C_LS003	chr14:35088010|35095048:-	PPP2R3C	protein phosphatase 2 regulatory subunit B''gamma	protein coding gene	no	ENST00000555219.1	0.219	0.132	1.267	0.753(7210)	0.756(531)	0.676(11745)	non tumor-specific	exon_skip	yes
MREG_LS002	chr2:215945734|215947023:-	MREG	melanoregulin	protein coding gene	no	ENST00000620139.4;ENST00000263268.10;ENST00000439791.5;ENST00000424992.5;ENST00000420348.1	35.426	16.124	6.017	0.942(9026)	0.934(656)	0.909(15794)	non tumor-specific	nAS	yes
C16orf95_LS005	chr16:87293087|87298788:-	C16orf95	chromosome 16 open reading frame 95	protein coding gene	no	ENST00000564821.1	0.232	0.000	0.667	0.002(18)	0(0)	0.002(36)	non tumor-specific	nAS	yes
HIPK4_LS002	chr19:40381168|40383783:-	HIPK4	homeodomain interacting protein kinase 4	protein coding gene	no	ENST00000291823.2	0.972	0.109	0.811	0.021(203)	0.024(17)	0.355(6172)	non tumor-specific	nAS	yes
UN_CHD1L_LS0026	chr1:147272630|147275354:+	CHD1L	chromodomain helicase DNA binding protein 1 like	protein coding gene	yes	.	2.803	0.277	0.000	0.016(158)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_SYNPO2_LS0076	chr4:119036953|119037156:-	SYNPO2	synaptopodin 2	protein coding gene	yes	.	2.568	1.617	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
MAPK9_LS008	chr5:180242755|180247855:-	MAPK9	mitogen-activated protein kinase 9	protein coding gene	yes	ENST00000455781.5;ENST00000343111.10	0.299	4.853	1.092	0.496(4748)	0.47(330)	0.471(8181)	non tumor-specific	mutex_exons	yes
UN_MAPK1_LS0009	chr22:21762943|21763143:+	MAPK1	mitogen-activated protein kinase 1	protein coding gene	no	.	1.845	1.980	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPA2_LS003	chr1:27894106|27894290:-	RPA2	replication protein A2	protein coding gene	no	ENST00000373912.7;ENST00000419958.5;ENST00000373909.7;ENST00000313433.11	155.660	81.733	72.369	0.999(9570)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
RPS6KA4_LS009	chr11:64361241|64361469:+	RPS6KA4	ribosomal protein S6 kinase A4	protein coding gene	no	ENST00000528057.5;ENST00000334205.8;ENST00000528355.5;ENST00000530504.1;ENST00000532885.5;ENST00000532496.1	78.731	40.761	43.299	0.991(9499)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
SCN7A_LS021	chr2:166465987|166470615:-	SCN7A	sodium voltage-gated channel alpha subunit 7	protein coding gene	no	ENST00000619410.4;ENST00000621965.4;ENST00000409855.6;ENST00000643258.1;ENST00000441411.2;ENST00000424326.5;ENST00000419992.6	2.933	3.390	2.612	0.096(920)	0.416(292)	0.565(9827)	non tumor-specific	nAS	yes
NKX3-2_LS001	chr4:13542528|13543949:-	NKX3-2	NK3 homeobox 2	protein coding gene	no	ENST00000382438.5	0.842	0.422	1.365	0.23(2206)	0.132(93)	0.21(3649)	non tumor-specific	nAS	yes
UN_BAG1_LS0030	chr9:33262235|33262702:-	BAG1	BAG cochaperone 1	protein coding gene	no	.	5.921	1.293	0.000	0.003(30)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AATF_LS018	chr17:37051241|37056601:+	AATF	apoptosis antagonizing transcription factor	protein coding gene	no	ENST00000622432.1	0.007	0.001	3.333	0.826(7918)	0.764(536)	0.077(1345)	non tumor-specific	nAS	yes
UN_ARHGEF6_LS0027	chrX:136781149|136781333:-	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor 6	protein coding gene	no	.	0.345	0.130	0.000	0.002(21)	0.011(8)	0(0)	non tumor-specific	intron_retention	no
AC009948.1_LS007	chr2:178426505|178430770:+	AC009948.1	-	lncRNA gene	no	ENST00000454488.5	0.225	0.217	1.018	0.672(6442)	0.736(517)	0.519(9017)	non tumor-specific	nAS	yes
TMEM173_LS017	chr5:139480898|139481478:-	TMEM173	stimulator of interferon response cGAMP interactor 1	protein coding gene	no	.;.	3.056	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SRPK2_LS0081	chr7:105125750|105126248:-	SRPK2	SRSF protein kinase 2	protein coding gene	no	.	0.513	0.170	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_KIN_LS0015	chr10:7780307|7787820:-	KIN	Kin17 DNA and RNA binding protein	protein coding gene	no	.	2.769	0.981	0.000	0.141(1351)	0.179(126)	0(0)	non tumor-specific	exon_skip	no
UN_XXYLT1_LS0028	chr3:195086022|195087173:-	XXYLT1	xyloside xylosyltransferase 1	protein coding gene	no	.	2.661	0.127	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZNF608_LS006	chr5:124638823|124639133:-	ZNF608	zinc finger protein 608	protein coding gene	no	ENST00000513985.5;ENST00000505686.5	1.173	1.245	2.493	0.689(6600)	0.791(555)	0.786(13667)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ATG3_LS010	chr3:112550262|112553280:-	ATG3	autophagy related 3	protein coding gene	no	ENST00000283290.9;ENST00000402314.6;ENST00000495756.5;ENST00000496423.1;ENST00000492886.5;ENST00000465980.1	149.870	84.687	75.729	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BRD3OS_LS0002	chr9:134025522|134025845:+	BRD3OS	BRD3 opposite strand	protein coding gene	no	.	0.288	0.036	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SIPA1L2_LS0019	chr1:232461157|232464836:-	SIPA1L2	signal induced proliferation associated 1 like 2	protein coding gene	no	.	6.752	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ABCC11_LS037	chr16:48231939|48247482:-	ABCC11	ATP binding cassette subfamily C member 11	protein coding gene	no	ENST00000569991.1	0.264	0.045	0.722	0.048(460)	0.061(43)	0.003(57)	non tumor-specific	exon_skip	yes
UN_RN7SL404P_UP_LS0003	chr17:64892600|64965813:-	RN7SL404P	RNA, 7SL, cytoplasmic 404, pseudogene	small non-coding RNA gene	no	.	0.982	0.031	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	nAS	no
RASGRP3_LS006	chr2:33476707|33481183:+	RASGRP3	RAS guanyl releasing protein 3	protein coding gene	no	ENST00000442390.5;ENST00000494927.1	0.281	0.233	0.908	0.334(3202)	0.436(306)	0.296(5145)	non tumor-specific	exon_skip;mutex_exons	yes
ERO1B_LS002	chr1:236220965|236221924:-	ERO1B	endoplasmic reticulum oxidoreductase 1 beta	protein coding gene	no	ENST00000354619.9;ENST00000264181.6	13.276	14.309	9.083	0.909(8708)	0.984(691)	0.972(16896)	non tumor-specific	nAS	yes
UN_NFATC2_LS0040	chr20:51524110|51531079:-	NFATC2	nuclear factor of activated T cells 2	protein coding gene	yes	.	1.664	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
TOP1MT_LS040	chr8:143344981|143359264:-	TOP1MT	DNA topoisomerase I mitochondrial	protein coding gene	no	ENST00000520950.5;ENST00000505857.2	0.214	0.004	0.703	0.003(32)	0.001(1)	0.002(43)	non tumor-specific	exon_skip	yes
MDGA2_LS021	chr14:47218190|47301411:-	MDGA2	MAM domain containing glycosylphosphatidylinositol anchor 2	protein coding gene	no	ENST00000482848.7	0.666	0.000	0.917	0.007(71)	0(0)	0.024(421)	non tumor-specific	alt_3prime	yes
UN_CDH4_LS0010	chr20:61254937|61535194:+	CDH4	cadherin 4	protein coding gene	yes	.	4.329	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
JADE2_LS005	chr5:134526286|134535858:+	JADE2	jade family PHD finger 2	protein coding gene	no	ENST00000395003.5	0.813	1.227	2.295	0.732(7014)	0.859(603)	0.837(14557)	non tumor-specific	nAS	yes
UN_NEMP1_LS0011	chr12:57063329|57064071:-	NEMP1	nuclear envelope integral membrane protein 1	protein coding gene	no	.	3.679	0.092	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC005842.1_LS0001	chr12:3874746|3874998:-	AC005842.1	-	lncRNA gene	no	.	1.590	0.079	0.000	0.016(150)	0.001(1)	0(0)	non tumor-specific	nAS	no
GALNT3_LS001	chr2:165748903|165749742:-	GALNT3	polypeptide N-acetylgalactosaminyltransferase 3	protein coding gene	no	ENST00000392701.7;ENST00000409882.5	41.798	28.158	5.563	0.814(7798)	0.917(644)	0.876(15221)	non tumor-specific	nAS	yes
UN_NSMF_LS0008	chr9:137448416|137448586:+	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein coding gene	no	.	1.710	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STN1_UP_LS0018	chr10:103966243|103966731:-	STN1	STN1 subunit of CST complex	protein coding gene	no	.	1.229	0.045	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR12_LS002	chr2:202882783|202883609:-	WDR12	WD repeat domain 12	protein coding gene	no	ENST00000261015.4	40.872	14.399	28.471	0.996(9545)	0.994(698)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_TTC6_UP_LS0012	chr14:37579867|37593550:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	.	2.365	1.316	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NCALD_LS0035	chr8:101906396|101909275:+	NCALD	neurocalcin delta	protein coding gene	no	.	2.149	0.036	0.000	0.02(195)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TENM1_LS0013	chrX:124485284|124486667:-	TENM1	teneurin transmembrane protein 1	protein coding gene	no	.	0.816	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGFBP5_LS0317	chr2:216694906|216694972:+	IGFBP5	insulin like growth factor binding protein 5	protein coding gene	yes	.	10.523	0.978	0.000	0.008(73)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CD8B_LS0004	chr2:86837657|86837891:+	CD8B	CD8b molecule	protein coding gene	no	.	2.240	0.087	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FLJ36000_LS0001	chr17:22406169|22406665:+	FLJ36000	-	lncRNA gene	no	.	7.763	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ZSWIM6_LS012	chr5:61539759|61541884:+	ZSWIM6	zinc finger SWIM-type containing 6	protein coding gene	no	ENST00000252744.5	14.863	10.282	14.653	0.934(8944)	0.974(684)	0.977(16980)	non tumor-specific	nAS	yes
AL121790.1_LS001	chr14:37564362|37578704:+	AL121790.1	-	lncRNA gene	no	ENST00000554829.1	1.721	0.878	0.876	0.141(1353)	0.268(188)	0.1(1745)	non tumor-specific	nAS	yes
SERPINB2_LS009	chr18:63897844|63901740:+	SERPINB2	serpin family B member 2	protein coding gene	no	ENST00000299502.8;ENST00000457692.5;ENST00000482254.1	14.588	24.907	2.837	0.326(3123)	0.272(191)	0.479(8322)	non tumor-specific	nAS	yes
AC113208.2_LS003	chr15:75228914|75229235:-	AC113208.2	-	pseudogene	no	ENST00000637356.2;ENST00000563803.1	0.928	0.000	0.769	0(2)	0(0)	0.005(91)	non tumor-specific	nAS	yes
TRIP6_LS013	chr7:100870743|100871061:+	TRIP6	thyroid hormone receptor interactor 6	protein coding gene	yes	ENST00000429658.1	0.158	0.931	0.790	0.236(2265)	0.231(162)	0.342(5951)	non tumor-specific	exon_skip	yes
FAH_LS009	chr15:80159877|80160410:+	FAH	symbol withdrawn, see [HGNC:3582](/data/gene-symbol-report/#!/hgnc_id/HGNC:3582)	protein coding gene	no	ENST00000558022.5;ENST00000407106.5;ENST00000537726.5;ENST00000558767.5;ENST00000261755.9;ENST00000561369.1;ENST00000561421.5;ENST00000539156.5;ENST00000646551.1	67.799	71.111	36.579	0.994(9522)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
POMGNT1_LS029	chr1:46196077|46196731:-	POMGNT1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein coding gene	no	ENST00000396420.7;ENST00000371984.7;ENST00000371992.1;ENST00000497439.5	68.535	43.323	40.700	0.99(9483)	0.997(700)	0.978(17003)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GIGYF2_LS0028	chr2:232817032|232832857:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	.	2.466	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RN7SL190P_UP_LS0002	chrX:123817773|123830095:-	RN7SL190P	RNA, 7SL, cytoplasmic 190, pseudogene	small non-coding RNA gene	no	.	2.983	12.838	0.000	0.03(285)	0.138(97)	0(0)	non tumor-specific	nAS	no
SYN3_LS004	chr22:32518334|32527918:-	SYN3	synapsin III	protein coding gene	no	ENST00000358763.6;ENST00000483062.5;ENST00000332840.9;ENST00000468922.1	1.022	0.599	1.626	0.265(2539)	0.412(289)	0.554(9621)	non tumor-specific	exon_skip	yes
PRKD1_LS029	chr14:30191450|30191866:-	PRKD1	protein kinase D1	protein coding gene	no	ENST00000549503.1	1.645	0.000	3.242	0.001(5)	0(0)	0.04(688)	non tumor-specific	nAS	yes
MROH4P_LS001	chr8:142569722|142570316:-	MROH4P	maestro heat like repeat family member 4, pseudogene	pseudogene	no	ENST00000641204.1	2.201	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_TGFA_UP_LS0003	chr2:70589875|70596428:-	TGFA	transforming growth factor alpha	protein coding gene	no	.	4.747	0.193	0.000	0.019(179)	0.006(4)	0(0)	non tumor-specific	nAS	no
SERHL2_LS026	chr22:42571203|42572436:+	SERHL2	serine hydrolase like 2	protein coding gene	no	ENST00000340239.8;ENST00000327678.9;ENST00000527167.5;ENST00000407614.8;ENST00000335879.5;ENST00000340239.8;ENST00000327678.9;ENST00000527167.5;ENST00000407614.8;ENST00000335879.5	4.971	5.115	5.475	0.675(6470)	0.853(599)	0.905(15725)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PKD1L3_LS010	chr16:71950017|71950118:-	PKD1L3	polycystin 1 like 3, transient receptor potential channel interacting	protein coding gene	no	ENST00000620267.1	2.240	0.000	0.778	0.003(24)	0(0)	0.182(3158)	non tumor-specific	nAS	yes
UN_Z98755.1_UP_LS0009	chr6:102781900|102782257:+	Z98755.1	-	pseudogene	no	.	2.193	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RBM4_LS0040	chr11:66646470|66649736:+	RBM4	RNA binding motif protein 4	protein coding gene	yes	.	1.417	0.340	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC12A8_LS011	chr3:125108123|125110189:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	.;.	5.323	0.220	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SHBG_LS015	chr17:7632959|7633204:+	SHBG	sex hormone binding globulin	protein coding gene	no	ENST00000575314.5;ENST00000572262.5;ENST00000340624.9;ENST00000380450.8;ENST00000570527.5;ENST00000570353.5;ENST00000575903.5	1.698	10.175	1.167	0.259(2483)	0.395(277)	0.544(9462)	non tumor-specific	exon_skip	yes
UN_ANXA6_LS0019	chr5:151105303|151109753:-	ANXA6	annexin A6	protein coding gene	no	.	122.959	41.661	0.000	0.019(183)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_PIEZO1_LS0002	chr16:88715474|88715535:+	PIEZO1	piezo type mechanosensitive ion channel component 1	protein coding gene	no	.	13.911	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TDRD10_LS0005	chr1:154521479|154534478:+	TDRD10	tudor domain containing 10	protein coding gene	no	.	1.551	0.287	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
RHBDF2_LS036	chr17:76487909|76501459:-	RHBDF2	rhomboid 5 homolog 2	protein coding gene	no	ENST00000591885.5	0.007	0.015	0.658	0.389(3730)	0.321(225)	0.067(1166)	non tumor-specific	nAS	yes
ZNF250_LS014	chr8:144890403|144895143:-	ZNF250	zinc finger protein 250	protein coding gene	no	ENST00000525694.5	0.039	0.027	0.670	0.063(607)	0.047(33)	0.093(1610)	non tumor-specific	exon_skip	yes
UN_PHF2_LS0043	chr9:93675022|93675684:+	PHF2	PHD finger protein 2	protein coding gene	no	.	3.694	1.113	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CHAT_LS001	chr10:49609199|49616502:+	CHAT	choline O-acetyltransferase	protein coding gene	no	ENST00000339797.5	0.005	0.000	0.882	0.002(20)	0(0)	0.002(37)	non tumor-specific	nAS	yes
SEZ6L2_LS001	chr16:29871728|29872187:-	SEZ6L2	seizure related 6 homolog like 2	protein coding gene	no	ENST00000346932.9;ENST00000350527.7;ENST00000308713.9;ENST00000537485.5;ENST00000617533.4	109.555	30.973	8.178	0.937(8973)	0.876(615)	0.898(15617)	non tumor-specific	nAS	yes
DCUN1D5_LS003	chr11:103064377|103066269:-	DCUN1D5	defective in cullin neddylation 1 domain containing 5	protein coding gene	no	ENST00000260247.9;ENST00000531571.5;ENST00000531543.1;ENST00000529281.5;ENST00000529294.5;ENST00000527576.5;ENST00000527779.1	93.551	34.064	45.601	0.997(9549)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_NOMO2_LS0587	chr16:18433379|18511633:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	48.512	8.876	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CRAT_LS0050	chr9:129108903|129109103:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	.	2.903	0.500	0.000	0.01(93)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC233724.10_UP_LS0006	chr5:18536417|18541052:-	AC233724.10	-	pseudogene	no	.	4.507	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PAX8_LS0101	chr2:113226620|113227155:-	PAX8	paired box 8	protein coding gene	yes	.	15.554	19.095	0.000	0.007(65)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
MGAM_LS006	chr7:141995930|142005529:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000549489.6;ENST00000620571.1;ENST00000475668.6	2.786	1.397	0.892	0.051(490)	0.172(121)	0.031(536)	non tumor-specific	alt_5prime;exon_skip	yes
PIGT_LS014	chr20:45416694|45418772:+	PIGT	phosphatidylinositol glycan anchor biosynthesis class T	protein coding gene	no	ENST00000640996.1;ENST00000638938.1;ENST00000640585.1;ENST00000638953.1;ENST00000638710.1	3.205	0.000	0.857	0(1)	0(0)	0.421(7325)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ABHD5_LS007	chr3:43699361|43699502:+	ABHD5	abhydrolase domain containing 5, lysophosphatidic acid acyltransferase	protein coding gene	no	ENST00000013894.3	0.144	0.005	0.717	0.001(14)	0.004(3)	0.062(1086)	non tumor-specific	exon_skip;intron_retention	yes
UN_KLHDC7B_LS0063	chr22:50550429|50550764:+	KLHDC7B	kelch domain containing 7B	protein coding gene	no	.	4.026	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RNF217-AS1_LS001	chr6:124912859|124920188:-	RNF217-AS1	RNF217 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000439075.1	0.277	0.066	0.628	0.016(151)	0.017(12)	0.014(249)	non tumor-specific	nAS	yes
UN_ALDH5A1_LS0022	chr6:24534756|24534782:-	ALDH5A1	aldehyde dehydrogenase 5 family member A1	protein coding gene	no	.	3.458	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL121753.1_LS0012	chr20:35279050|35279680:+	AL121753.1	-	protein coding gene	no	.	1.901	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FABP3_LS0015	chr1:31374387|31376812:+	FABP3	fatty acid binding protein 3	protein coding gene	yes	.	1.173	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM29_LS022	chr11:120123055|120123800:-	TRIM29	tripartite motif containing 29	protein coding gene	no	ENST00000528870.5	0.053	0.120	3.948	0.375(3592)	0.318(223)	0.134(2331)	non tumor-specific	alt_5prime	yes
GTF2H2C_LS014	chr5:69566625|69566967:+	GTF2H2C	GTF2H2 family member C	protein coding gene	no	ENST00000512736.5;ENST00000502619.5;ENST00000506129.5;ENST00000510979.5;ENST00000514162.5;ENST00000380729.7;ENST00000508325.5;ENST00000507595.1;ENST00000503604.1	11.256	7.006	1.621	0.984(9430)	0.984(691)	0.774(13450)	non tumor-specific	exon_skip	yes
FANCI_LS019	chr15:89247726|89258704:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	ENST00000568670.5	0.268	0.350	0.922	0.624(5980)	0.423(297)	0.41(7119)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF483_LS0006	chr9:111525793|111527268:+	ZNF483	zinc finger protein 483	protein coding gene	no	.	1.616	0.281	0.000	0.003(27)	0.009(6)	0(0)	non tumor-specific	nAS	no
EIF5B_LS011	chr2:99369481|99371656:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	ENST00000289371.10	151.045	89.637	154.917	0.998(9560)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ATG10_LS0025	chr5:82009650|82009674:-	ATG10	autophagy related 10	protein coding gene	no	.	44.703	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
SLC9A8_LS004	chr20:49839599|49845036:+	SLC9A8	solute carrier family 9 member A8	protein coding gene	no	ENST00000417961.5;ENST00000361573.2	9.396	7.381	6.316	0.858(8224)	0.949(666)	0.966(16789)	non tumor-specific	exon_skip	yes
UN_CRLF3_LS0009	chr17:30769965|30784779:+	CRLF3	cytokine receptor like factor 3	protein coding gene	no	.	6.960	1.159	0.000	0.022(207)	0.021(15)	0(0)	non tumor-specific	nAS	no
C3orf85_LS001	chr3:109118395|109136844:+	C3orf85	chromosome 3 open reading frame 85	protein coding gene	no	ENST00000479039.3	0.007	0.053	0.606	0.032(308)	0.174(122)	0.001(19)	non tumor-specific	nAS	yes
PPM1A_LS008	chr14:60250481|60268293:+	PPM1A	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein coding gene	yes	.;.	1.194	0.435	0.000	0.03(287)	0.038(27)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MB21D2_LS0003	chr3:192799134|192799235:-	MB21D2	Mab-21 domain containing 2	protein coding gene	no	.	2.987	0.576	0.000	0.033(319)	0.013(9)	0(0)	non tumor-specific	nAS	no
SKIV2L_LS028	chr6:31968017|31968332:+	SKIV2L	Ski2 like RNA helicase	protein coding gene	no	.;.	4.310	0.983	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_SCAF1_LS0013	chr19:49646202|49646494:+	SCAF1	SR-related CTD associated factor 1	protein coding gene	no	.	3.287	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
ANO7_LS008	chr2:241199423|241200089:+	ANO7	anoctamin 7	protein coding gene	no	ENST00000274979.12;ENST00000402430.7;ENST00000475532.1	2.329	2.320	4.503	0.151(1449)	0.192(135)	0.106(1838)	non tumor-specific	intron_retention	yes
UN_CTSK_LS0010	chr1:150799705|150804021:-	CTSK	cathepsin K	protein coding gene	no	.	7.363	0.464	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_HSD17B6_LS0042	chr12:56774667|56783786:-	HSD17B6	hydroxysteroid 17-beta dehydrogenase 6	protein coding gene	no	.	2.965	3.504	0.000	0.04(381)	0.009(6)	0(0)	non tumor-specific	nAS	no
C1orf167_LS019	chr1:11788047|11788164:+	C1orf167	chromosome 1 open reading frame 167	protein coding gene	no	ENST00000433342.5;ENST00000312793.9	0.087	0.000	0.719	0.002(19)	0(0)	0.239(4149)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FGD1_LS008	chrX:54455784|54456220:-	FGD1	FYVE, RhoGEF and PH domain containing 1	protein coding gene	no	ENST00000375135.3	23.849	7.891	12.906	0.877(8406)	0.869(610)	0.923(16052)	non tumor-specific	nAS	yes
CFLAR-AS1_LS019	chr2:201149760|201151098:-	CFLAR-AS1	CFLAR antisense RNA 1	lncRNA gene	no	ENST00000631217.2;ENST00000630898.2;ENST00000628897.2;ENST00000629722.2;ENST00000625360.2;ENST00000415011.6;ENST00000628648.2;ENST00000598453.5;ENST00000626451.2;ENST00000628309.2;ENST00000595372.5;ENST00000598509.5	0.214	0.077	0.798	0.16(1530)	0.138(97)	0.133(2311)	non tumor-specific	nAS	yes
UN_RF00019_UP_LS0694	chr16:173271|176929:+	RF00019	-	small non-coding RNA gene	no	.	391.771	338.751	0.000	0.008(78)	0.048(34)	0(0)	non tumor-specific	nAS	no
C4BPA_LS006	chr1:207113167|207114100:+	C4BPA	complement component 4 binding protein alpha	protein coding gene	no	ENST00000367070.7;ENST00000421786.5;ENST00000424088.1	38.245	116.821	1.690	0.3(2875)	0.456(320)	0.241(4193)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01814_LS0020	chr2:8579060|8579911:-	LINC01814	long intergenic non-protein coding RNA 1814	lncRNA gene	no	.	1.336	0.231	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UTRN_LS045	chr6:144516948|144521980:+	UTRN	utrophin	protein coding gene	no	ENST00000367545.7	11.124	16.429	11.639	0.799(7660)	0.944(663)	0.952(16542)	non tumor-specific	nAS	yes
UN_MUC4_LS0855	chr3:195787369|195787802:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	3.765	4.211	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_MYO19_LS0053	chr17:36531067|36531668:-	MYO19	myosin XIX	protein coding gene	no	.	0.610	0.000	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_COG6_LS0004	chr13:39683883|39687503:+	COG6	component of oligomeric golgi complex 6	protein coding gene	no	.	1.788	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
PLA2G4F_LS011	chr15:42147346|42147626:-	PLA2G4F	phospholipase A2 group IVF	protein coding gene	no	ENST00000397272.7;ENST00000290497.11;ENST00000569985.5;ENST00000561893.1	6.717	7.714	7.308	0.553(5299)	0.786(552)	0.424(7371)	non tumor-specific	intron_retention	yes
UN_NCALD_LS0014	chr8:101745993|101779924:-	NCALD	neurocalcin delta	protein coding gene	no	.	0.752	0.435	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TECPR1_LS010	chr7:98223170|98223662:-	TECPR1	tectonin beta-propeller repeat containing 1	protein coding gene	no	ENST00000447648.6;ENST00000490842.5;ENST00000474915.5;ENST00000479975.5;ENST00000476659.5	16.756	9.122	20.123	0.977(9362)	0.981(689)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_PARK7_LS0025	chr1:7970968|7977652:+	PARK7	Parkinsonism associated deglycase	protein coding gene	yes	.	196.714	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CDC40_LS016	chr6:110219479|110219736:+	CDC40	cell division cycle 40	protein coding gene	no	ENST00000606893.5;ENST00000368932.5;ENST00000307731.1;ENST00000368930.5	33.381	25.843	24.874	0.978(9374)	0.994(698)	0.978(17001)	non tumor-specific	exon_skip	yes
CFAP299_LS005	chr4:80583183|80608333:+	CFAP299	cilia and flagella associated protein 299	protein coding gene	no	ENST00000508675.1	0.024	0.391	0.832	0.014(136)	0.071(50)	0.067(1166)	non tumor-specific	exon_skip;mutex_exons	yes
POC5_LS024	chr5:75712951|75717306:-	POC5	POC5 centriolar protein	protein coding gene	no	ENST00000428202.6;ENST00000514838.6;ENST00000515285.5;ENST00000506164.5;ENST00000512125.5;ENST00000508467.5;ENST00000507421.1	4.861	2.482	4.120	0.936(8970)	0.934(656)	0.938(16304)	non tumor-specific	exon_skip	yes
UN_PRKAA1_LS0006	chr5:40762042|40762176:+	PRKAA1	protein kinase AMP-activated catalytic subunit alpha 1	protein coding gene	yes	.	0.836	1.467	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
RPL7L1_LS011	chr6:42883614|42883858:+	RPL7L1	ribosomal protein L7 like 1	protein coding gene	no	ENST00000462348.1	0.098	0.388	0.699	0.688(6590)	0.793(557)	0.24(4174)	non tumor-specific	alt_3prime;exon_skip	yes
GUCY2GP_LS005	chr10:112314441|112315301:-	GUCY2GP	guanylate cyclase 2G, pseudogene	pseudogene	no	ENST00000479705.5;ENST00000490269.1	2.573	0.435	0.810	0.005(44)	0.003(2)	0.031(547)	non tumor-specific	nAS	yes
UN_TEX35_LS0005	chr1:178539726|178541608:-	TEX35	testis expressed 35	protein coding gene	no	.	1.844	0.416	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NKAIN3_LS003	chr8:62579676|62589714:+	NKAIN3	sodium/potassium transporting ATPase interacting 3	protein coding gene	no	ENST00000519049.5;ENST00000523367.1;ENST00000523211.5	5.562	0.630	1.704	0.115(1101)	0.017(12)	0.344(5984)	non tumor-specific	exon_skip	yes
UN_ZMYM4_LS0015	chr1:35294336|35295927:+	ZMYM4	zinc finger MYM-type containing 4	protein coding gene	no	.	1.378	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AL445426.1_LS001	chr1:112177613|112360362:-	AL445426.1	-	lncRNA gene	no	ENST00000427290.1	0.060	0.116	1.134	0.21(2009)	0.563(395)	0.449(7801)	non tumor-specific	nAS	yes
SLC35A2_LS006	chrX:48905482|48906392:-	SLC35A2	solute carrier family 35 member A2	protein coding gene	no	ENST00000635285.1;ENST00000247138.10;ENST00000635628.1;ENST00000376521.6;ENST00000635589.1;ENST00000616181.5;ENST00000452555.7;ENST00000446885.1;ENST00000635238.1;ENST00000634665.1	47.970	24.207	14.927	0.991(9490)	0.997(700)	0.978(16996)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_EVA1C_LS0029	chr21:32504015|32514786:+	EVA1C	eva-1 homolog C	protein coding gene	no	.	7.745	2.288	0.000	0.001(12)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_AHNAK_LS0709	chr11:62522551|62526434:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	4.801	1.393	0.000	0.006(59)	0.017(12)	0(0)	non tumor-specific	nAS	no
DDX60L_LS026	chr4:168416797|168419302:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000260184.11;ENST00000511577.5;ENST00000505890.5;ENST00000504793.1	6.260	3.226	3.607	0.761(7290)	0.865(607)	0.878(15255)	non tumor-specific	exon_skip	yes
UN_AC140847.2_UP_LS0009	chr12:37814351|37814980:-	AC140847.2	-	lncRNA gene	no	.	2.097	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BOLA2_UP_LS0005	chr16:29464932|29465395:-	BOLA2	bolA family member 2	protein coding gene	no	.	0.379	0.081	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZSCAN29_LS0007	chr15:43361941|43366110:-	ZSCAN29	zinc finger and SCAN domain containing 29	protein coding gene	no	.	1.097	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_IPMKP1_UP_LS0011	chr13:22876474|22894606:-	IPMKP1	inositol polyphosphate multikinase pseudogene 1	pseudogene	no	.	1.655	0.131	0.000	0.016(157)	0.036(25)	0(0)	non tumor-specific	nAS	no
ADAMTS6_LS015	chr5:65260663|65262804:-	ADAMTS6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein coding gene	no	ENST00000381052.8	0.323	0.053	0.716	0.02(191)	0.009(6)	0.144(2510)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SF3A2_LS0026	chr19:2246957|2247818:-	SF3A2	splicing factor 3a subunit 2	protein coding gene	no	.	1.318	0.312	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
TTLL7_LS030	chr1:83921160|83921247:-	TTLL7	tubulin tyrosine ligase like 7	protein coding gene	no	ENST00000472688.5;ENST00000480174.5;ENST00000477524.5;ENST00000488014.5;ENST00000260505.12;ENST00000474957.5;ENST00000485638.5;ENST00000610996.1;ENST00000482783.1	4.716	4.584	11.394	0.515(4933)	0.702(493)	0.923(16039)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC104819.3_UP_LS0017	chr4:151407707|151409211:-	AC104819.3	-	lncRNA gene	no	.	0.272	0.047	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HMCN1_LS0022	chr1:186087330|186088145:+	HMCN1	hemicentin 1	protein coding gene	no	.	0.739	0.098	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SPOUT1_LS0023	chr9:128821891|128822002:-	SPOUT1	SPOUT domain containing methyltransferase 1	protein coding gene	no	.	6.805	0.820	0.000	0.019(184)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_CICP14_LS0004	chr7:128656013|128656129:+	CICP14	capicua transcriptional repressor pseudogene 14	pseudogene	no	.	0.872	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01698_LS001	chr1:209367784|209367889:+	LINC01698	long intergenic non-protein coding RNA 1698	lncRNA gene	no	ENST00000443636.1	0.685	0.058	0.493	0.012(113)	0.003(2)	0.009(160)	non tumor-specific	nAS	yes
PIGQ_LS001	chr16:567075|567471:+	PIGQ	phosphatidylinositol glycan anchor biosynthesis class Q	protein coding gene	no	ENST00000409527.6	1.153	0.963	1.028	0.515(4930)	0.714(501)	0.458(7957)	non tumor-specific	nAS	yes
MED20_LS008	chr6:41916939|41917795:-	MED20	mediator complex subunit 20	protein coding gene	no	ENST00000434077.1	0.029	0.003	0.586	0.079(755)	0.056(39)	0.038(660)	non tumor-specific	alt_5prime;exon_skip	yes
SIDT2_LS008	chr11:117181971|117182060:+	SIDT2	SID1 transmembrane family member 2	protein coding gene	no	ENST00000324225.8;ENST00000620360.4;ENST00000278951.11;ENST00000628876.2;ENST00000431081.6;ENST00000524842.5;ENST00000531353.1;ENST00000528397.1	22.802	27.201	40.349	0.966(9255)	0.987(693)	0.979(17018)	non tumor-specific	exon_skip	yes
CUX1_LS044	chr7:102280860|102281840:+	CUX1	cut like homeobox 1	protein coding gene	yes	ENST00000437600.9;ENST00000292538.9;ENST00000393824.7;ENST00000622516.5;ENST00000547394.6;ENST00000425244.6;ENST00000560541.5;ENST00000558836.5;ENST00000487284.2	149.295	97.576	65.620	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
POU2F2_LS036	chr19:42160392|42196383:-	POU2F2	POU class 2 homeobox 2	protein coding gene	no	ENST00000532176.2	0.405	0.052	0.714	0.032(310)	0.009(6)	0.086(1490)	non tumor-specific	nAS	yes
NT5DC1_LS002	chr6:116106335|116108364:+	NT5DC1	5'-nucleotidase domain containing 1	protein coding gene	no	ENST00000319550.8;ENST00000419791.3	46.862	43.093	26.729	0.984(9427)	0.994(698)	0.978(17006)	non tumor-specific	nAS	yes
UN_IGHV3-72_UP_LS0020	chr14:106803217|106810703:-	IGHV3-72	immunoglobulin heavy variable 3-72	no	no	.	121.210	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FASN_LS044	chr17:82091684|82092455:-	FASN	fatty acid synthase	protein coding gene	yes	ENST00000306749.3;ENST00000634990.1	49.756	30.802	25.248	0.94(9009)	0.976(685)	0.97(16858)	non tumor-specific	alt_3prime	yes
CBS_LS018	chr21:43065521|43065616:-	CBS	cystathionine beta-synthase	protein coding gene	no	ENST00000461686.5;ENST00000398158.5;ENST00000398165.7;ENST00000359624.7;ENST00000352178.9	22.116	17.303	3.633	0.813(7786)	0.89(625)	0.742(12905)	non tumor-specific	exon_skip	yes
LRRN2_LS007	chr1:204682997|204685320:-	LRRN2	leucine rich repeat neuronal 2	protein coding gene	no	ENST00000367176.7	0.279	0.026	0.735	0.03(286)	0.021(15)	0.016(278)	non tumor-specific	exon_skip;mutex_exons	yes
AC008676.1_LS001	chr5:157376945|157384213:-	AC008676.1	-	lncRNA gene	no	ENST00000508443.1	0.180	0.280	0.705	0.029(280)	0.043(30)	0.001(12)	non tumor-specific	nAS	yes
UN_CD68_LS0062	chr17:7581011|7581414:-	CD68	CD68 molecule	protein coding gene	no	.	5.614	0.960	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC29A4_LS013	chr7:5294934|5296936:+	SLC29A4	solute carrier family 29 member 4	protein coding gene	no	ENST00000396872.7;ENST00000297195.8;ENST00000406453.3;ENST00000396872.7;ENST00000297195.8;ENST00000406453.3	15.663	6.263	3.901	0.675(6468)	0.732(514)	0.797(13850)	non tumor-specific	alt_5prime;exon_skip	yes
C12orf42_LS006	chr12:103267708|103267853:-	C12orf42	chromosome 12 open reading frame 42	protein coding gene	no	ENST00000547347.5;ENST00000547470.5;ENST00000551303.5;ENST00000550650.5	0.275	0.092	0.822	0.011(103)	0.004(3)	0.041(710)	non tumor-specific	exon_skip	yes
UN_FTH1_LS0060	chr11:61964869|61965007:+	FTH1	ferritin heavy chain 1	protein coding gene	no	.	223.563	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
SPARCL1_LS005	chr4:87473803|87479430:-	SPARCL1	SPARC like 1	protein coding gene	yes	ENST00000282470.10;ENST00000418378.5;ENST00000503414.5;ENST00000282470.10;ENST00000418378.5;ENST00000503414.5;ENST00000282470.10;ENST00000418378.5;ENST00000503414.5	480.595	557.811	1065.624	0.973(9326)	0.991(696)	0.975(16945)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLCO2B1_LS022	chr11:75188238|75193218:+	SLCO2B1	solute carrier organic anion transporter family member 2B1	protein coding gene	no	ENST00000289575.9;ENST00000532236.5;ENST00000531756.5;ENST00000525650.5;ENST00000454962.6;ENST00000428359.6	20.135	31.178	20.177	0.888(8504)	0.987(693)	0.927(16120)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C12orf76_LS0016	chr12:110036384|110037359:+	C12orf76	chromosome 12 open reading frame 76	protein coding gene	no	.	2.447	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
KRT78_LS010	chr12:52846824|52847907:-	KRT78	keratin 78	protein coding gene	no	ENST00000359499.8;ENST00000304620.4;ENST00000547110.5;ENST00000551581.1	8.450	79.491	1.272	0.192(1843)	0.12(84)	0.35(6078)	non tumor-specific	alt_5prime;exon_skip	yes
ALDH7A1_LS004	chr5:126546399|126549929:-	ALDH7A1	aldehyde dehydrogenase 7 family member A1	protein coding gene	no	ENST00000637782.1;ENST00000635851.1;ENST00000409134.7;ENST00000636872.1;ENST00000637206.1;ENST00000637272.1;ENST00000636886.1;ENST00000636879.1;ENST00000636808.1;ENST00000636743.1;ENST00000553117.5;ENST00000485852.7;ENST00000497231.7;ENST00000638010.1;ENST00000636482.1;ENST00000458249.6;ENST00000637292.1;ENST00000638008.1;ENST00000636286.1;ENST00000636225.1	150.854	122.611	89.385	0.996(9539)	0.997(700)	0.967(16815)	non tumor-specific	alt_3prime;exon_skip	yes
HARS_LS023	chr5:140683219|140690855:-	HARS	histidyl-tRNA synthetase 1	protein coding gene	no	ENST00000457527.6;ENST00000644191.1;ENST00000504156.6;ENST00000415192.6;ENST00000507746.6;ENST00000518126.5;ENST00000502888.1	62.081	40.482	36.465	0.996(9542)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
AL512310.11_LS001	chr14:19499790|19618006:+	AL512310.11	-	lncRNA gene	no	ENST00000548217.5;ENST00000548261.1	1.838	0.189	1.010	0.026(248)	0.034(24)	0.008(138)	non tumor-specific	nAS	yes
GLT1D1_LS003	chr12:128876062|128888639:+	GLT1D1	glycosyltransferase 1 domain containing 1	protein coding gene	no	ENST00000441390.6;ENST00000442111.6;ENST00000281703.10;ENST00000539044.5;ENST00000413816.6;ENST00000537468.1	2.627	2.402	2.376	0.192(1837)	0.299(210)	0.541(9410)	non tumor-specific	exon_skip	yes
SPINK5_LS006	chr5:148065372|148070380:+	SPINK5	serine peptidase inhibitor Kazal type 5	protein coding gene	no	ENST00000521206.5;ENST00000508733.5;ENST00000521206.5;ENST00000508733.5	0.324	0.628	8.310	0.158(1517)	0.117(82)	0.156(2708)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MUC4_LS0201	chr3:195779727|195782704:+	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	3.464	0.537	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ACTL8_LS0007	chr1:17793679|17822985:+	ACTL8	actin like 8	protein coding gene	no	.	4.359	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
VRK2_LS003	chr2:58018086|58025665:+	VRK2	VRK serine/threonine kinase 2	protein coding gene	no	ENST00000648897.1;ENST00000478687.5	0.784	0.001	1.554	0.006(54)	0.001(1)	0.06(1035)	non tumor-specific	exon_skip	yes
UBR7_LS012	chr14:93218735|93219212:+	UBR7	ubiquitin protein ligase E3 component n-recognin 7	protein coding gene	no	ENST00000013070.10;ENST00000553674.1	40.623	26.796	22.945	0.994(9521)	0.997(700)	0.978(17008)	non tumor-specific	nAS	yes
MICALL2_LS034	chr7:1447765|1448620:-	MICALL2	MICAL like 2	protein coding gene	no	ENST00000472100.5;ENST00000413446.5;ENST00000297508.7	23.955	12.295	24.578	0.975(9343)	0.976(685)	0.968(16828)	non tumor-specific	alt_3prime	yes
S100A1_LS002	chr1:153628496|153628782:+	S100A1	S100 calcium binding protein A1	protein coding gene	no	ENST00000436839.1	0.359	0.101	2.627	0.335(3205)	0.449(315)	0.42(7305)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_IVL_LS0066	chr1:152910764|152911116:-	IVL	involucrin	protein coding gene	no	.	7.435	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ALDOA_LS026	chr16:30069673|30069830:+	ALDOA	aldolase, fructose-bisphosphate A	protein coding gene	no	ENST00000569545.5;ENST00000563060.6;ENST00000564521.6;ENST00000412304.6;ENST00000564546.6;ENST00000564595.7;ENST00000643777.1;ENST00000642816.1;ENST00000569798.5;ENST00000395240.7;ENST00000564688.1;ENST00000566130.1;ENST00000565355.1	2857.340	1188.235	1903.100	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
STK16_LS015	chr2:219247246|219247415:+	STK16	serine/threonine kinase 16	protein coding gene	no	ENST00000409638.7;ENST00000475696.5;ENST00000396738.6;ENST00000496800.5;ENST00000409260.5;ENST00000478018.5;ENST00000486813.1;ENST00000409743.1	72.767	45.693	39.543	0.997(9549)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ACTB_LS0209	chr7:5528018|5528293:+	ACTB	actin beta	protein coding gene	no	.	2.295	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MYH1_LS017	chr17:10502914|10503006:-	MYH1	myosin heavy chain 1	protein coding gene	no	ENST00000226207.5	8.789	5.212	1.215	0.028(271)	0.081(57)	0.412(7169)	non tumor-specific	nAS	yes
UN_AC068888.1_LS0023	chr12:53044217|53045065:-	AC068888.1	-	lncRNA gene	no	.	4.878	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MGA_LS006	chr15:41697023|41698863:+	MGA	maltase-glucoamylase	protein coding gene	no	ENST00000563576.5;ENST00000566718.5;ENST00000545763.5;ENST00000219905.11;ENST00000566586.5;ENST00000570161.5	6.288	2.834	2.923	0.618(5924)	0.775(544)	0.853(14822)	non tumor-specific	nAS	yes
STAG2_LS029	chrX:124047505|124049005:+	STAG2	stromal antigen 2	protein coding gene	no	ENST00000455404.5;ENST00000218089.13;ENST00000371160.5;ENST00000371157.7;ENST00000371145.7;ENST00000371144.7	42.311	29.316	18.016	0.96(9200)	0.989(694)	0.977(16978)	non tumor-specific	nAS	yes
NTAN1_LS008	chr16:15041676|15047442:-	NTAN1	N-terminal asparagine amidase	protein coding gene	no	ENST00000568738.1;ENST00000568738.1	0.020	0.021	0.984	0.53(5075)	0.56(393)	0.536(9311)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MIR3924_UP_LS0055	chr10:57989482|57991696:-	MIR3924	microRNA 3924	small non-coding RNA gene	no	.	3.362	0.245	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ORC3_LS012	chr6:87612248|87616314:+	ORC3	origin recognition complex subunit 3	protein coding gene	no	ENST00000546266.5;ENST00000392844.7;ENST00000257789.4	21.524	13.530	16.721	0.978(9370)	0.991(696)	0.977(16986)	non tumor-specific	alt_3prime;exon_skip	yes
SEC14L1_LS468	chr17:77216192|77216323:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	5.354	1.281	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CNGA3_LS009	chr2:98383441|98389658:+	CNGA3	cyclic nucleotide gated channel subunit alpha 3	protein coding gene	no	ENST00000393504.5;ENST00000272602.6;ENST00000409937.1	2.079	0.187	0.911	0.046(441)	0.011(8)	0.085(1482)	non tumor-specific	exon_skip	yes
UN_C9orf147_LS0008	chr9:112471646|112474317:+	C9orf147	chromosome 9 open reading frame 147	lncRNA gene	no	.	2.018	0.338	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	nAS	no
KIF15_LS031	chr3:44830075|44830896:+	KIF15	kinesin family member 15	protein coding gene	no	ENST00000326047.8;ENST00000438321.5;ENST00000425755.5;ENST00000453693.1	12.679	2.306	1.500	0.743(7118)	0.283(199)	0.62(10774)	non tumor-specific	alt_3prime	yes
SLC25A19_LS030	chr17:75288461|75289089:-	SLC25A19	solute carrier family 25 member 19	protein coding gene	no	ENST00000579207.5;ENST00000579207.5;ENST00000579207.5	0.043	0.031	0.695	0.312(2991)	0.242(170)	0.162(2822)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
MON2_LS033	chr12:62556192|62560491:+	MON2	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein coding gene	no	ENST00000641654.1;ENST00000393630.7;ENST00000546600.5;ENST00000547095.5;ENST00000552738.5;ENST00000393629.6;ENST00000641654.1;ENST00000393630.7;ENST00000546600.5;ENST00000547095.5;ENST00000552738.5;ENST00000393629.6	16.381	11.964	12.918	0.888(8509)	0.974(684)	0.972(16894)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PALD1_LS005	chr10:70531454|70532621:+	PALD1	phosphatase domain containing paladin 1	protein coding gene	no	ENST00000263563.6	13.352	7.535	9.347	0.855(8195)	0.917(644)	0.915(15905)	non tumor-specific	nAS	yes
ESRP2_LS010	chr16:68232288|68232371:-	ESRP2	epithelial splicing regulatory protein 2	protein coding gene	no	ENST00000565858.5;ENST00000473183.6	27.952	25.647	18.519	0.772(7398)	0.925(649)	0.518(9009)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NFE2L1_LS0242	chr17:48059983|48060034:+	NFE2L1	nuclear factor, erythroid 2 like 1	protein coding gene	no	.	147.340	31.549	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF167_LS022	chr17:4940993|4941077:+	RNF167	ring finger protein 167	protein coding gene	no	ENST00000571816.5;ENST00000573404.5;ENST00000576452.5;ENST00000572430.5;ENST00000262482.10;ENST00000575111.5;ENST00000576229.5;ENST00000570492.5;ENST00000572554.1	38.337	27.701	122.779	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MFSD12_UP_LS0001	chr19:3579047|3585489:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	1.754	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
HUS1_LS013	chr7:47975687|47976787:-	HUS1	HUS1 checkpoint clamp component	protein coding gene	no	.;.	2.049	0.089	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
RSRC2_LS008	chr12:122511188|122514712:-	RSRC2	arginine and serine rich coiled-coil 2	protein coding gene	no	ENST00000525335.6	0.268	0.090	1.836	0.036(347)	0.03(21)	0.726(12627)	non tumor-specific	exon_skip	yes
NR3C2_LS001	chr4:148081499|148114104:-	NR3C2	nuclear receptor subfamily 3 group C member 2	protein coding gene	no	ENST00000344721.8;ENST00000625323.2;ENST00000358102.7;ENST00000512865.5;ENST00000342437.8;ENST00000511528.1	11.344	20.828	9.096	0.686(6572)	0.926(650)	0.925(16077)	non tumor-specific	nAS	yes
MYBPC2_LS023	chr19:50459306|50460040:+	MYBPC2	myosin binding protein C2	protein coding gene	no	ENST00000357701.5	7.572	29.520	1.305	0.155(1486)	0.125(88)	0.528(9178)	non tumor-specific	nAS	yes
WFDC3_LS017	chr20:45777209|45787836:-	WFDC3	WAP four-disulfide core domain 3	protein coding gene	no	ENST00000337205.8;ENST00000243938.8;ENST00000487343.5	0.295	0.014	0.903	0.035(339)	0.027(19)	0.153(2653)	non tumor-specific	exon_skip	yes
AL022068.1_LS010	chr6:19640583|19689827:-	AL022068.1	-	lncRNA gene	no	ENST00000636202.1	2.378	0.165	0.869	0.013(124)	0.031(22)	0.158(2747)	non tumor-specific	nAS	yes
UN_ATP6V0E1P4_UP_LS0018	chr1:47524734|47526492:+	ATP6V0E1P4	ATPase H+ transporting V0 subunit e1 pseudogene 4	pseudogene	no	.	5.734	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACTB_LS0321	chr7:5528477|5529291:+	ACTB	actin beta	protein coding gene	no	.	28.802	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CNTN1_LS015	chr12:40930002|40933461:+	CNTN1	contactin 1	protein coding gene	no	ENST00000547702.5;ENST00000551295.6;ENST00000547849.5;ENST00000347616.5;ENST00000348761.2	16.557	13.556	5.378	0.43(4116)	0.805(565)	0.751(13049)	non tumor-specific	nAS	yes
UN_LINC01107_UP_LS0008	chr2:238693003|238693548:-	LINC01107	long intergenic non-protein coding RNA 1107	lncRNA gene	no	.	5.270	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DLG4_LS021	chr17:7204058|7204199:-	DLG4	LLGL scribble cell polarity complex component 1	protein coding gene	no	ENST00000302955.11;ENST00000399510.7;ENST00000649971.1;ENST00000649186.1;ENST00000650120.1;ENST00000485100.5;ENST00000486626.8;ENST00000493294.2;ENST00000447163.6	3.403	7.616	7.418	0.801(7671)	0.875(614)	0.956(16610)	non tumor-specific	alt_3prime	yes
FAM76B_LS017	chr11:95786274|95787624:-	FAM76B	family with sequence similarity 76 member B	protein coding gene	no	ENST00000358780.9;ENST00000398187.6;ENST00000543641.5;ENST00000536839.1;ENST00000545654.5;ENST00000542135.5;ENST00000540054.5;ENST00000538047.5	12.404	6.118	18.574	0.949(9090)	0.977(686)	0.977(16980)	non tumor-specific	alt_3prime	yes
RTTN_LS060	chr18:70176845|70188108:-	RTTN	rotatin	protein coding gene	no	ENST00000640769.1;ENST00000583043.5;ENST00000255674.11;ENST00000581161.5;ENST00000638251.1;ENST00000640376.1;ENST00000581583.1	2.900	1.254	1.876	0.469(4491)	0.571(401)	0.773(13439)	non tumor-specific	nAS	yes
UN_GPX1P2_UP_LS0004	chr21:27175545|27179166:-	GPX1P2	glutathione peroxidase pseudogene 2	pseudogene	no	.	6.481	0.194	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	nAS	no
ECHDC1_LS012	chr6:127316081|127316450:-	ECHDC1	ethylmalonyl-CoA decarboxylase 1	protein coding gene	no	ENST00000417628.6	0.016	0.055	0.669	0.046(444)	0.051(36)	0.08(1382)	non tumor-specific	alt_3prime;exon_skip	yes
TYRO3_LS011	chr15:41569022|41570027:+	TYRO3	TYRO3 protein tyrosine kinase	protein coding gene	no	ENST00000559066.5;ENST00000263798.7	16.224	13.584	10.530	0.839(8040)	0.839(589)	0.913(15873)	non tumor-specific	exon_skip	yes
UN_AGRN_LS0067	chr1:1045876|1045940:+	AGRN	agrin	protein coding gene	yes	.	16.446	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MTMR3_LS0018	chr22:29986640|29988480:+	MTMR3	myotubularin related protein 3	protein coding gene	no	.	1.315	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
HYOU1_LS037	chr11:119056167|119056279:-	HYOU1	hypoxia up-regulated 1	protein coding gene	no	ENST00000621959.4;ENST00000530467.5;ENST00000610597.1	0.016	0.017	0.737	0.44(4211)	0.419(294)	0.136(2367)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KPNA6_LS0080	chr1:32175860|32176004:+	KPNA6	karyopherin subunit alpha 6	protein coding gene	no	.	6.074	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AKAP6_LS011	chr14:32577242|32599410:+	AKAP6	A-kinase anchoring protein 6	protein coding gene	no	ENST00000280979.8;ENST00000557354.5;ENST00000557272.1	4.832	4.504	5.367	0.332(3184)	0.628(441)	0.8(13901)	non tumor-specific	exon_skip	yes
UN_NR2F1_LS0011	chr5:93585486|93587135:+	NR2F1	nuclear receptor subfamily 2 group F member 1	protein coding gene	no	.	2.156	0.467	0.000	0.003(25)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_PLXNA3_LS0035	chrX:154466512|154466722:+	PLXNA3	plexin A3	protein coding gene	no	.	1.237	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_IGKV1OR2-2_UP_LS0017	chr2:94199639|94201941:-	IGKV1OR2-2	immunoglobulin kappa variable 1/OR2-2 (pseudogene)	pseudogene	no	.	1.198	0.714	0.000	0.01(93)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_AC114728.1_LS0003	chr4:19813944|19813992:+	AC114728.1	-	pseudogene	no	.	31.004	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM157A_LS0082	chr3:198219980|198220998:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	2.005	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KLK15_UP_LS0019	chr19:50858059|50876503:-	KLK15	kallikrein related peptidase 15	protein coding gene	no	.	9.610	6.854	0.000	0.009(87)	0.013(9)	0(0)	non tumor-specific	nAS	no
AP003071.5_LS001	chr11:69155687|69157174:+	AP003071.5	-	protein coding gene	no	ENST00000641568.1	2.543	3.592	0.000	0.006(55)	0.08(56)	0(0)	non tumor-specific	nAS	yes
HFM1_LS002	chr1:91262392|91262481:-	HFM1	helicase for meiosis 1	protein coding gene	no	ENST00000462405.5;ENST00000370425.7;ENST00000430465.1	3.274	0.646	2.616	0.114(1096)	0.131(92)	0.735(12770)	non tumor-specific	exon_skip	yes
UN_PDE8B_LS0022	chr5:77413309|77417975:+	PDE8B	phosphodiesterase 8B	protein coding gene	no	.	2.200	0.336	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
RBMS3_LS019	chr3:29281756|29434746:+	RBMS3	RNA binding motif single stranded interacting protein 3	protein coding gene	yes	ENST00000434693.6;ENST00000383766.6	0.229	0.385	3.593	0.402(3847)	0.697(489)	0.786(13660)	non tumor-specific	alt_3prime;exon_skip	yes
SMPD4_LS001	chr2:130152884|130153043:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000431183.6;ENST00000454468.5;ENST00000412570.5;ENST00000433118.5;ENST00000351288.10;ENST00000491128.5;ENST00000482171.5;ENST00000439886.5;ENST00000409031.5	108.264	42.540	69.138	0.985(9438)	0.989(694)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PHF21A_LS0015	chr11:45969904|45979760:-	PHF21A	PHD finger protein 21A	protein coding gene	no	.	2.923	0.530	0.000	0.003(29)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAH6_LS056	chr2:84705747|84706896:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	ENST00000389394.7;ENST00000237449.10	1.914	1.561	1.123	0.064(616)	0.195(137)	0.326(5665)	non tumor-specific	exon_skip	yes
MADD_LS062	chr11:47324577|47326544:+	MADD	MAP kinase activating death domain	protein coding gene	yes	ENST00000634938.1	17.138	2.032	1.409	0.039(375)	0.007(5)	0.476(8273)	non tumor-specific	nAS	yes
MUC2_LS045	chr11:1105887|1107086:+	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	ENST00000361558.7;ENST00000361558.7	38.263	217.285	0.926	0.175(1673)	0.127(89)	0.2(3480)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC093484.1_UP_LS0003	chr17:16412615|16415772:+	AC093484.1	-	lncRNA gene	no	.	0.599	0.142	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RGS12_LS011	chr4:3385793|3386416:+	RGS12	regulator of G protein signaling 12	protein coding gene	no	ENST00000503041.5	0.759	0.090	0.700	0.287(2748)	0.321(225)	0.105(1826)	non tumor-specific	alt_5prime;intron_retention	yes
LINC01320_LS024	chr2:34722121|34731366:+	LINC01320	long intergenic non-protein coding RNA 1320	lncRNA gene	no	ENST00000626601.2;ENST00000627270.2;ENST00000603129.5	0.908	0.105	1.051	0.042(403)	0.06(42)	0.002(37)	non tumor-specific	nAS	yes
UN_FAM102A_LS0120	chr9:127963827|127979992:-	FAM102A	family with sequence similarity 102 member A	protein coding gene	no	.	1.863	1.724	0.000	0.013(127)	0.037(26)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC092329.3_LS0038	chr19:23261744|23270040:-	AC092329.3	-	protein coding gene	no	.	3.374	0.758	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
APC_LS015	chr5:112801383|112815495:+	APC	APC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000507379.5;ENST00000257430.8;ENST00000508376.6;ENST00000512211.6	6.531	5.600	3.687	0.59(5654)	0.799(561)	0.917(15942)	non tumor-specific	exon_skip	yes
STK31_LS016	chr7:23735896|23736904:+	STK31	serine/threonine kinase 31	protein coding gene	no	ENST00000355870.7;ENST00000476399.5;ENST00000433467.6;ENST00000354639.7;ENST00000405627.7	3.340	0.364	0.814	0.142(1364)	0.023(16)	0.216(3753)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DAB2IP_LS0112	chr9:121769352|121770546:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	.	0.958	0.212	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_CCNQ_LS0008	chrX:153588316|153588361:+	CCNQ	cyclin Q	protein coding gene	no	.	3.077	0.073	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	nAS	no
LEXM_LS009	chr1:54817122|54841616:+	LEXM	lymphocyte expansion molecule	protein coding gene	no	ENST00000358193.7	1.201	3.449	1.170	0.018(171)	0.043(30)	0.104(1806)	non tumor-specific	exon_skip	yes
PNISR_LS010	chr6:99402710|99404603:-	PNISR	PNN interacting serine and arginine rich protein	protein coding gene	no	ENST00000476159.1;ENST00000476159.1;ENST00000476159.1	4.696	2.279	3.626	0.78(7477)	0.761(534)	0.909(15802)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC079753.1_UP_LS0004	chr2:112770896|112774239:+	AC079753.1	-	lncRNA gene	no	.	1.689	0.548	0.000	0.014(132)	0.001(1)	0(0)	non tumor-specific	nAS	no
AGBL2_LS017	chr11:47704728|47710377:-	AGBL2	ATP/GTP binding protein like 2	protein coding gene	no	ENST00000529712.5;ENST00000532595.5	0.327	0.189	0.888	0.126(1207)	0.108(76)	0.291(5055)	non tumor-specific	exon_skip	yes
SUCLA2_LS005	chr13:47936773|47939267:-	SUCLA2	succinate-CoA ligase ADP-forming subunit beta	protein coding gene	no	ENST00000484941.2	0.174	0.047	0.683	0.061(583)	0.056(39)	0.027(474)	non tumor-specific	nAS	yes
ATXN1_LS021	chr6:16754746|16761298:-	ATXN1	ataxin 1	protein coding gene	no	ENST00000643828.1	1.272	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_TRIM60P19_UP_LS0003	chr13:66145302|66230340:+	TRIM60P19	tripartite motif containing 60 pseudogene 19	pseudogene	no	.	9.338	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
TRIP12_LS012	chr2:229788940|229789611:-	TRIP12	thyroid hormone receptor interactor 12	protein coding gene	no	ENST00000283943.9;ENST00000389045.7;ENST00000389044.8	76.493	47.451	59.431	0.933(8936)	0.981(689)	0.979(17021)	non tumor-specific	exon_skip	yes
CCDC28A_LS005	chr6:138788388|138792749:+	CCDC28A	coiled-coil domain containing 28A	protein coding gene	yes	ENST00000611852.4;ENST00000332797.10;ENST00000617445.4	70.310	64.354	50.324	0.993(9515)	0.991(696)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AHNAK_LS1342	chr11:62531794|62532542:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	1.346	0.190	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
UBALD1_LS012	chr16:4610555|4614678:-	UBALD1	UBA like domain containing 1	protein coding gene	no	ENST00000283474.11;ENST00000587615.1;ENST00000283474.11;ENST00000587615.1	35.955	24.504	39.845	0.984(9431)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
STX6_LS002	chr1:180984771|180988239:-	STX6	syntaxin 6	protein coding gene	no	ENST00000542060.5;ENST00000258301.5;ENST00000469135.1	54.853	26.719	24.159	0.996(9543)	0.994(698)	0.979(17014)	non tumor-specific	nAS	yes
AC104574.2_LS004	chr15:61590003|61635415:-	AC104574.2	-	lncRNA gene	no	ENST00000559783.2	3.681	0.347	1.155	0.024(234)	0.016(11)	0.267(4636)	non tumor-specific	nAS	yes
MKS1_LS011	chr17:58208001|58208105:-	MKS1	MKS transition zone complex subunit 1	protein coding gene	no	ENST00000393119.6;ENST00000313863.10;ENST00000537529.6;ENST00000393120.6;ENST00000577315.5;ENST00000577824.5;ENST00000585134.1	16.542	7.726	14.952	0.992(9504)	0.991(696)	0.975(16946)	non tumor-specific	exon_skip	yes
UN_BAG1_LS0046	chr9:33264311|33264348:-	BAG1	BAG cochaperone 1	protein coding gene	no	.	13.703	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SCARA3_LS0022	chr8:27658617|27658774:-	SCARA3	scavenger receptor class A member 3	protein coding gene	no	.	0.693	0.354	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SF1_LS016	chr11:64767844|64768106:-	SF1	splicing factor 1	protein coding gene	no	ENST00000377387.5;ENST00000377390.7;ENST00000227503.13;ENST00000448404.5;ENST00000377394.7;ENST00000334944.9;ENST00000433274.6;ENST00000486867.1	258.184	163.546	275.538	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
CRIP2_LS006	chr14:105474905|105479125:+	CRIP2	cysteine rich protein 2	protein coding gene	no	ENST00000550577.5	0.085	0.121	0.656	0.475(4547)	0.584(410)	0.075(1309)	non tumor-specific	alt_3prime;mutex_exons	yes
RBM19_LS031	chr12:113959903|113960059:-	RBM19	RNA binding motif protein 19	protein coding gene	no	ENST00000545145.6;ENST00000392561.7;ENST00000261741.9;ENST00000546876.1	19.931	9.804	20.663	0.966(9255)	0.984(691)	0.978(17002)	non tumor-specific	nAS	yes
UN_AC004057.1_UP_LS0013	chr4:113420483|113434222:-	AC004057.1	-	pseudogene	no	.	1.833	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
NAV3_LS021	chr12:78116904|78118027:+	NAV3	neuron navigator 3	protein coding gene	no	ENST00000536525.6;ENST00000397909.6;ENST00000644176.1	2.488	1.075	2.246	0.133(1278)	0.175(123)	0.705(12249)	non tumor-specific	nAS	yes
MED24_LS046	chr17:40034972|40035117:-	MED24	mediator complex subunit 24	protein coding gene	no	ENST00000501516.7;ENST00000580008.5;ENST00000479829.5	3.385	1.991	5.040	0.843(8075)	0.845(593)	0.944(16410)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL031663.2_LS001	chr20:45487710|45489992:+	AL031663.2	-	lncRNA gene	no	ENST00000417630.1	0.093	0.009	0.755	0.006(59)	0.001(1)	0.003(49)	non tumor-specific	nAS	yes
PDE2A_LS026	chr11:72589981|72590192:-	PDE2A	phosphodiesterase 2A	protein coding gene	no	ENST00000334456.9;ENST00000539367.5;ENST00000444035.6;ENST00000544570.5;ENST00000418754.6;ENST00000540345.5;ENST00000475807.6	2.481	14.076	15.166	0.585(5608)	0.947(665)	0.916(15921)	non tumor-specific	nAS	yes
UN_NUP88_LS0037	chr17:5386292|5386708:-	NUP88	nucleoporin 88	protein coding gene	no	.	11.494	2.359	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NEMP1_LS0040	chr12:57086794|57087222:-	NEMP1	nuclear envelope integral membrane protein 1	protein coding gene	no	.	0.869	0.037	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCM2_LS023	chr7:45068579|45069826:+	CCM2	CCM2 scaffold protein	protein coding gene	no	ENST00000461377.5;ENST00000258781.10;ENST00000541586.5;ENST00000488727.5;ENST00000648329.1;ENST00000475551.5;ENST00000381112.7;ENST00000482714.5;ENST00000480658.5;ENST00000472223.5;ENST00000477605.1;ENST00000480382.1	104.691	54.354	66.354	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_IGHG4_UP_LS0148	chr14:105643869|105668850:-	IGHG4	immunoglobulin heavy constant gamma 4 (G4m marker)	no	no	.	250.522	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
RAPGEF3_LS046	chr12:47751520|47751723:-	RAPGEF3	Rap guanine nucleotide exchange factor 3	protein coding gene	no	ENST00000449771.6;ENST00000405493.6;ENST00000549151.5;ENST00000482843.5;ENST00000479866.5;ENST00000389212.7;ENST00000548919.5;ENST00000395358.7;ENST00000466322.5;ENST00000495953.2	5.594	7.582	22.531	0.866(8296)	0.927(651)	0.946(16440)	non tumor-specific	alt_3prime	yes
ENTPD6_LS023	chr20:25217581|25218550:+	ENTPD6	ectonucleoside triphosphate diphosphohydrolase 6	protein coding gene	no	ENST00000354989.9;ENST00000360031.6;ENST00000376652.8;ENST00000439162.5;ENST00000433417.5;ENST00000433259.6;ENST00000425813.5;ENST00000447877.5;ENST00000376666.3;ENST00000471478.1	46.592	29.397	60.600	0.994(9522)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TNFRSF12A_LS0016	chr16:3021621|3022048:-	TNFRSF12A	TNF receptor superfamily member 12A	protein coding gene	yes	.	1.542	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC66_LS003	chr3:56557957|56558846:+	CCDC66	coiled-coil domain containing 66	protein coding gene	no	ENST00000469966.1	0.016	0.000	0.672	0.039(372)	0.033(23)	0.008(145)	non tumor-specific	nAS	yes
ASAH1_LS033	chr8:18075580|18083981:-	ASAH1	N-acylsphingosine amidohydrolase 1	protein coding gene	no	ENST00000523593.6	18.133	0.000	1.167	0(2)	0(0)	0.629(10927)	non tumor-specific	alt_3prime	yes
CENPA_LS004	chr2:26792240|26792502:+	CENPA	centromere protein A	protein coding gene	no	ENST00000419525.5	0.150	0.001	0.569	0.062(596)	0.001(1)	0.008(145)	non tumor-specific	alt_3prime;exon_skip	yes
SALL2_LS006	chr14:21524931|21525337:-	SALL2	spalt like transcription factor 2	protein coding gene	yes	ENST00000546363.5;ENST00000450879.2	0.125	0.087	0.802	0.202(1933)	0.291(204)	0.147(2557)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GRK3_LS019	chr22:25703576|25704109:+	GRK3	G protein-coupled receptor kinase 3	protein coding gene	no	ENST00000324198.10;ENST00000619906.4	15.220	8.696	5.330	0.887(8501)	0.917(644)	0.943(16387)	non tumor-specific	alt_5prime;exon_skip	yes
UN_VGLL4_LS0023	chr3:11558302|11558367:+	VGLL4	vestigial like family member 4	protein coding gene	no	.	1.506	0.541	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MIR4531_UP_LS0015	chr19:44716180|44719230:-	MIR4531	microRNA 4531	small non-coding RNA gene	no	.	3.114	0.675	0.000	0.008(80)	0.007(5)	0(0)	non tumor-specific	nAS	no
SETX_LS035	chr9:132346471|132349252:-	SETX	senataxin	protein coding gene	no	ENST00000224140.5	9.780	7.536	4.578	0.731(7000)	0.893(627)	0.894(15540)	non tumor-specific	exon_skip	yes
CRIP1_LS006	chr14:105488516|105488663:+	CRIP1	cysteine rich protein 1	protein coding gene	no	ENST00000496700.5;ENST00000330233.11;ENST00000409393.6;ENST00000392531.3;ENST00000460900.1;ENST00000461556.1	246.066	130.681	159.173	0.99(9483)	0.991(696)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_AL161636.1_UP_LS0324	chr1:153140579|153150008:+	AL161636.1	-	lncRNA gene	no	.	49.785	6.829	0.000	0.008(80)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC105942.1_LS0022	chr1:94931985|94939829:+	AC105942.1	-	lncRNA gene	no	.	1.470	1.007	0.000	0.192(1837)	0.286(201)	0(0)	non tumor-specific	nAS	no
RALGPS1_LS018	chr9:127174782|127177897:+	RALGPS1	Ral GEF with PH domain and SH3 binding motif 1	protein coding gene	no	ENST00000373436.5	0.261	0.124	0.699	0.054(520)	0.08(56)	0.04(695)	non tumor-specific	nAS	yes
SOX2-OT_LS040	chr3:181699883|181707330:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000628347.1	0.019	0.006	0.860	0.07(668)	0.011(8)	0.006(109)	non tumor-specific	nAS	yes
UN_CCDC148_LS0032	chr2:158366076|158456415:-	CCDC148	coiled-coil domain containing 148	protein coding gene	no	.	1.039	0.247	0.000	0.005(51)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_TICRR_LS0006	chr15:89585942|89588912:+	TICRR	TOPBP1 interacting checkpoint and replication regulator	protein coding gene	no	.	0.772	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01256_LS002	chr4:132662365|132678423:+	LINC01256	long intergenic non-protein coding RNA 1256	lncRNA gene	no	ENST00000513270.1	1.740	0.000	0.698	0(1)	0(0)	0(8)	non tumor-specific	nAS	yes
IFNG_LS002	chr12:68158095|68158191:-	IFNG	interferon gamma	protein coding gene	yes	ENST00000229135.3	2.988	0.906	1.257	0.312(2991)	0.222(156)	0.197(3416)	non tumor-specific	nAS	yes
OSTC_LS002	chr4:108650794|108655564:+	OSTC	oligosaccharyltransferase complex non-catalytic subunit	protein coding gene	no	ENST00000361564.8;ENST00000613215.4;ENST00000512478.2	161.195	83.454	78.842	0.994(9526)	0.996(699)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
CDC37_LS003	chr19:10393157|10393280:-	CDC37	cell division cycle 37, HSP90 cochaperone	protein coding gene	no	ENST00000589625.5	11.510	11.580	6.361	0.913(8750)	0.877(616)	0.973(16915)	non tumor-specific	alt_5prime	yes
PCNX1_LS031	chr14:71047105|71047807:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000304743.6;ENST00000439984.7;ENST00000554691.5	12.195	8.596	11.608	0.885(8477)	0.972(682)	0.97(16853)	non tumor-specific	alt_3prime	yes
SPEF2_LS008	chr5:35649425|35654540:+	SPEF2	sperm flagellar 2	protein coding gene	no	ENST00000282469.10;ENST00000509059.5;ENST00000637569.1;ENST00000356031.7;ENST00000510777.5;ENST00000440995.6;ENST00000502454.1	3.826	3.280	5.645	0.826(7912)	0.902(633)	0.924(16056)	non tumor-specific	alt_3prime	yes
HSP90B1_LS001	chr12:103930338|103931521:+	HSP90B1	heat shock protein 90 beta family member 1	protein coding gene	yes	ENST00000549334.5	0.034	0.088	0.630	0.666(6379)	0.66(463)	0.091(1577)	non tumor-specific	nAS	yes
UN_AC040970.1_UP_LS0016	chr8:141203048|141204702:-	AC040970.1	-	lncRNA gene	no	.	2.160	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CROCCP2_LS0057	chr1:16632769|16633095:-	CROCCP2	CROCC pseudogene 2	pseudogene	no	.	3.366	2.024	0.000	0.251(2404)	0.291(204)	0(0)	non tumor-specific	nAS	no
CHD6_LS009	chr20:41423700|41425178:-	CHD6	chromodomain helicase DNA binding protein 6	protein coding gene	no	ENST00000373233.7	14.064	9.889	9.661	0.907(8687)	0.959(673)	0.952(16541)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ATL2_UP_LS0009	chr2:38386789|38406632:-	ATL2	atlastin GTPase 2	protein coding gene	no	.	3.136	0.455	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_C6orf48_UP_LS0241	chr6:31817310|31829305:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	122.436	13.079	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
TONSL_LS001	chr8:144429336|144430404:-	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	ENST00000497613.2;ENST00000409379.7	18.596	2.919	6.590	0.912(8739)	0.768(539)	0.954(16579)	non tumor-specific	exon_skip;intron_retention	yes
GLRA3_LS003	chr4:174656787|174659054:-	GLRA3	glycine receptor alpha 3	protein coding gene	no	ENST00000274093.7	2.242	1.004	1.348	0.048(458)	0.06(42)	0.076(1326)	non tumor-specific	exon_skip	yes
UN_UBL7-AS1_LS0001	chr15:74461418|74466036:+	UBL7-AS1	UBL7 antisense RNA 1 (head to head)	lncRNA gene	no	.	1.357	0.045	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LAMTOR3_LS0004	chr4:99879747|99879844:-	LAMTOR3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein coding gene	no	.	10.164	2.399	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
PCCA-AS1_LS005	chr13:100480363|100480980:-	PCCA-AS1	PCCA antisense RNA 1	lncRNA gene	no	ENST00000455958.5	2.819	0.000	0.693	0.001(10)	0(0)	0.009(148)	non tumor-specific	nAS	yes
UN_ABCD3_LS0012	chr1:94428745|94458607:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	.	2.081	0.452	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC012616.1_UP_LS0002	chr19:8804399|8808163:-	AC012616.1	-	pseudogene	no	.	0.962	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00564_UP_LS0007	chr13:81306322|81339706:-	LINC00564	long intergenic non-protein coding RNA 564	lncRNA gene	no	.	3.067	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FUBP3_LS0005	chr9:130579764|130609954:+	FUBP3	far upstream element binding protein 3	protein coding gene	no	.	1.332	0.510	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AL078604.2_LS001	chr6:159587955|159588169:-	AL078604.2	-	lncRNA gene	no	ENST00000430078.1	0.244	0.085	0.930	0.111(1060)	0.056(39)	0.257(4459)	non tumor-specific	nAS	yes
MYO16_LS018	chr13:108898133|108910003:+	MYO16	myosin XVI	protein coding gene	no	ENST00000356711.6;ENST00000457511.6;ENST00000251041.9;ENST00000357550.3;ENST00000375857.6	6.395	0.610	1.061	0.083(794)	0.016(11)	0.153(2656)	non tumor-specific	alt_3prime	yes
GOLGA2_LS025	chr9:128266325|128267458:-	GOLGA2	golgin A2	protein coding gene	no	ENST00000458730.2;ENST00000458730.2	14.024	5.007	16.990	0.958(9181)	0.937(658)	0.961(16710)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PATE1_LS006	chr11:125746696|125747700:+	PATE1	prostate and testis expressed 1	protein coding gene	no	ENST00000437148.2;ENST00000437148.2	0.252	0.107	0.933	0.001(7)	0.016(11)	0(4)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
HELLS_LS003	chr10:94545907|94546377:+	HELLS	helicase, lymphoid specific	protein coding gene	no	ENST00000419900.5;ENST00000419900.5	2.154	0.364	0.821	0.586(5618)	0.369(259)	0.226(3937)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_SMPD4_LS0080	chr2:130182375|130182627:+	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	.	8.221	2.357	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
AC044860.1_LS005	chr15:85208929|85209025:-	AC044860.1	-	pseudogene	no	ENST00000648573.1;ENST00000560756.5;ENST00000559481.5;ENST00000560811.5	2.812	1.816	0.735	0.832(7975)	0.808(567)	0.173(3012)	non tumor-specific	nAS	yes
UN_EXD2_LS0020	chr14:69236542|69237579:+	EXD2	exonuclease 3'-5' domain containing 2	protein coding gene	no	.	2.493	0.000	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
WT1_LS010	chr11:32416540|32417424:-	WT1	WT1 transcription factor	protein coding gene	yes	ENST00000379077.7	0.064	0.000	1.004	0.029(281)	0.023(16)	0.052(900)	non tumor-specific	alt_5prime	yes
ADAM33_LS042	chr20:3677143|3679492:-	ADAM33	ADAM metallopeptidase domain 33	protein coding gene	no	ENST00000356518.6;ENST00000379861.8;ENST00000619289.4;ENST00000350009.6;ENST00000617732.1	5.601	6.043	30.496	0.227(2179)	0.561(394)	0.927(16110)	non tumor-specific	nAS	yes
UN_AC144568.1_UP_LS0011	chr8:69691|70046:-	AC144568.1	-	pseudogene	no	.	1.117	0.640	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ANXA2P2_LS0012	chr9:33624555|33624590:-	ANXA2P2	annexin A2 pseudogene 2	pseudogene	no	.	2.069	0.647	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
PXDN_LS037	chr2:1693134|1744256:-	PXDN	peroxidasin	protein coding gene	no	ENST00000252804.8;ENST00000433670.5;ENST00000425171.1	6.503	2.828	7.276	0.799(7657)	0.886(622)	0.851(14784)	non tumor-specific	exon_skip	yes
MND1_LS003	chr4:153350129|153355654:+	MND1	meiotic nuclear divisions 1	protein coding gene	no	ENST00000622785.4;ENST00000240488.7;ENST00000503967.1;ENST00000509752.5;ENST00000508731.5;ENST00000504860.2	12.850	1.630	1.444	0.94(9010)	0.674(473)	0.605(10523)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00226_UP_LS0075	chr14:106211148|106268819:+	LINC00226	long intergenic non-protein coding RNA 226	lncRNA gene	no	.	4.930	1.842	0.000	0.074(705)	0.071(50)	0(0)	non tumor-specific	nAS	no
RPS6KA6_LS004	chrX:84097848|84102037:-	RPS6KA6	ribosomal protein S6 kinase A6	protein coding gene	yes	ENST00000620340.4;ENST00000262752.4;ENST00000495332.1	4.765	4.776	3.360	0.439(4202)	0.699(491)	0.814(14151)	non tumor-specific	exon_skip	yes
MIR193BHG_LS006	chr16:14322547|14323297:+	MIR193BHG	MIR193B host gene	lncRNA gene	no	ENST00000635394.1;ENST00000641728.1	2.650	0.000	0.684	0(2)	0(0)	0.023(408)	non tumor-specific	nAS	yes
UN_FREM1_LS0046	chr9:14869244|14908764:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	.	1.625	0.161	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
PPP1R7_LS021	chr2:241160494|241163285:+	PPP1R7	protein phosphatase 1 regulatory subunit 7	protein coding gene	no	ENST00000438799.5;ENST00000402734.5;ENST00000423280.5;ENST00000407025.5;ENST00000272983.12;ENST00000234038.10;ENST00000404405.7;ENST00000406106.7;ENST00000401987.5;ENST00000450367.1;ENST00000485630.5;ENST00000491715.1	219.450	135.468	171.576	0.998(9565)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_SERINC2_LS0006	chr1:31414064|31415842:+	SERINC2	serine incorporator 2	protein coding gene	no	.	3.062	0.064	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_RPL9P6_UP_LS0007	chr14:82593065|82610010:-	RPL9P6	ribosomal protein L9 pseudogene 6	pseudogene	no	.	4.622	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
COL18A1_LS029	chr21:45488444|45489486:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	160.244	147.285	112.877	0.985(9436)	0.997(700)	0.978(17003)	non tumor-specific	exon_skip	yes
UN_SH3GLB1_LS0012	chr1:86728489|86730088:+	SH3GLB1	SH3 domain containing GRB2 like, endophilin B1	protein coding gene	yes	.	30.636	0.592	0.000	0.029(280)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_TIAL1_UP_LS0006	chr10:119681738|119682311:-	TIAL1	TIA1 cytotoxic granule associated RNA binding protein like 1	protein coding gene	no	.	2.507	0.644	0.000	0.025(235)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_KLC4_LS0068	chr6:43060276|43060523:+	KLC4	kinesin light chain 4	protein coding gene	no	.	1.757	1.310	0.000	0.013(120)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC090023.2_LS0006	chr12:65652919|65654224:-	AC090023.2	-	lncRNA gene	no	.	3.881	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
NBPF11_LS005	chr1:148107114|148107711:-	NBPF11	NBPF member 11	protein coding gene	no	ENST00000614785.4;ENST00000614015.4;ENST00000614506.4;ENST00000615281.4;ENST00000613531.1	4.785	2.861	3.939	0.919(8807)	0.947(665)	0.92(15987)	non tumor-specific	nAS	yes
TREML3P_LS002	chr6:41209730|41215762:-	TREML3P	triggering receptor expressed on myeloid cells like 3, pseudogene	pseudogene	no	ENST00000564680.5;ENST00000457327.2	1.602	0.077	1.242	0.108(1037)	0.068(48)	0.196(3410)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0055	chr14:104941770|104942266:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.981	0.137	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SMTN_LS0044	chr22:31095906|31096733:+	SMTN	smoothelin	protein coding gene	no	.	5.717	0.430	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_CAMSAP3_UP_LS0001	chr19:7561317|7563680:+	CAMSAP3	calmodulin regulated spectrin associated protein family member 3	protein coding gene	no	.	2.273	0.559	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL591485.1_LS0010	chr6:8466636|8469991:+	AL591485.1	-	no	no	.	1.324	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PUF60_LS037	chr8:143824399|143829280:-	PUF60	poly(U) binding splicing factor 60	protein coding gene	no	ENST00000526683.5;ENST00000349157.10;ENST00000532127.5;ENST00000526151.5;ENST00000526683.5;ENST00000349157.10;ENST00000532127.5;ENST00000526151.5	6.863	5.611	41.336	0.959(9189)	0.977(686)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TCEAL1_LS003	chrX:103629561|103629885:+	TCEAL1	transcription elongation factor A like 1	protein coding gene	no	ENST00000372626.7;ENST00000372624.3	20.263	17.532	21.997	0.975(9340)	0.989(694)	0.969(16840)	non tumor-specific	alt_5prime;intron_retention	yes
HABP4_LS002	chr9:96458541|96465337:+	HABP4	hyaluronan binding protein 4	protein coding gene	no	ENST00000375249.4	39.164	36.218	35.328	0.978(9372)	0.997(700)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
AC018521.4_LS001	chr17:47980682|47995951:-	AC018521.4	-	lncRNA gene	no	ENST00000578239.1	0.010	0.017	0.679	0.907(8689)	0.872(612)	0.028(482)	non tumor-specific	nAS	yes
AL009031.1_LS001	chr6:16259376|16262177:-	AL009031.1	-	lncRNA gene	no	ENST00000632346.1	17.161	0.750	2.774	0.043(412)	0.007(5)	0.198(3443)	non tumor-specific	nAS	yes
PNISR_LS017	chr6:99410964|99412551:-	PNISR	PNN interacting serine and arginine rich protein	protein coding gene	no	ENST00000647811.1;ENST00000369239.9;ENST00000438806.5;ENST00000478777.5;ENST00000492294.5	35.173	23.537	94.733	0.978(9367)	0.99(695)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
ARL2BPP3_LS001	chr13:36789502|36792627:+	ARL2BPP3	ADP ribosylation factor like GTPase 2 binding protein pseudogene 3	pseudogene	no	ENST00000580773.1	1.964	0.000	0.662	0(1)	0(0)	0.002(42)	non tumor-specific	nAS	yes
TRAPPC8_LS008	chr18:31849739|31852446:-	TRAPPC8	trafficking protein particle complex 8	protein coding gene	no	ENST00000283351.8;ENST00000580104.5;ENST00000582539.5;ENST00000578886.1	26.868	20.693	25.758	0.979(9380)	0.991(696)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_RAB5C_LS0049	chr17:42126848|42128019:-	RAB5C	RAB5C, member RAS oncogene family	protein coding gene	no	.	20.249	2.579	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02038_UP_LS0008	chr3:193852617|193868585:-	LINC02038	long intergenic non-protein coding RNA 2038	lncRNA gene	no	.	1.942	0.611	0.000	0.01(100)	0.004(3)	0(0)	non tumor-specific	nAS	no
OPA1_LS011	chr3:193615770|193618869:+	OPA1	OPA1 mitochondrial dynamin like GTPase	protein coding gene	no	ENST00000361150.6;ENST00000646793.1	0.146	0.180	1.616	0.76(7278)	0.832(584)	0.698(12136)	non tumor-specific	exon_skip	yes
LINC01451_LS002	chr9:136612903|136614124:-	LINC01451	long intergenic non-protein coding RNA 1451	lncRNA gene	no	ENST00000628780.1	0.125	0.048	1.399	0.174(1670)	0.114(80)	0.237(4125)	non tumor-specific	nAS	yes
FO393418.1_LS001	chr22:36388735|36396118:+	FO393418.1	-	lncRNA gene	no	ENST00000424761.1	0.292	0.204	1.258	0.376(3599)	0.436(306)	0.527(9155)	non tumor-specific	nAS	yes
ADAMTS12_LS010	chr5:33614376|33615828:-	ADAMTS12	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein coding gene	no	ENST00000504830.5;ENST00000352040.7;ENST00000504582.5;ENST00000506952.1	4.143	1.337	1.497	0.421(4038)	0.262(184)	0.502(8720)	non tumor-specific	nAS	yes
ADGRF1_LS024	chr6:47022058|47024044:-	ADGRF1	adhesion G protein-coupled receptor F1	protein coding gene	yes	ENST00000371253.6;ENST00000419892.6;ENST00000449332.6;ENST00000475745.5;ENST00000471487.5;ENST00000493249.5;ENST00000487323.5;ENST00000371243.2;ENST00000491283.5;ENST00000477771.5;ENST00000474800.1	6.592	10.109	4.458	0.446(4275)	0.726(510)	0.193(3356)	non tumor-specific	nAS	yes
ANGEL1_LS012	chr14:76806849|76807433:-	ANGEL1	angel homolog 1	protein coding gene	no	ENST00000251089.6	16.690	11.058	12.740	0.932(8934)	0.977(686)	0.971(16882)	non tumor-specific	exon_skip	yes
EDNRB_LS007	chr13:77903360|77903495:-	EDNRB	endothelin receptor type B	protein coding gene	yes	ENST00000377211.8;ENST00000646948.1;ENST00000646607.1;ENST00000334286.7;ENST00000646605.1;ENST00000626030.1;ENST00000475537.2;ENST00000645696.1;ENST00000643890.1	60.855	37.116	25.520	0.871(8345)	0.983(690)	0.963(16731)	non tumor-specific	nAS	yes
TNRC18_LS016	chr7:5325248|5329937:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	ENST00000455076.1	7.364	3.893	5.222	0.915(8769)	0.939(659)	0.941(16356)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RAMP3_LS006	chr7:45177441|45183157:+	RAMP3	receptor activity modifying protein 3	protein coding gene	no	ENST00000242249.8;ENST00000496212.5;ENST00000481345.1;ENST00000242249.8;ENST00000496212.5;ENST00000481345.1	36.710	60.110	44.944	0.972(9308)	0.994(698)	0.937(16295)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC084759.3_UP_LS0010	chr15:53827976|53876878:+	AC084759.3	-	lncRNA gene	no	.	1.433	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CKS1B_LS006	chr1:154975608|154977987:+	CKS1B	CDC28 protein kinase regulatory subunit 1B	protein coding gene	yes	ENST00000473344.1;ENST00000473344.1	0.723	0.452	0.874	0.549(5262)	0.543(381)	0.36(6252)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL139148.1_UP_LS0007	chr1:118602118|118602217:+	AL139148.1	-	pseudogene	no	.	2.974	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEC22B4P_LS0027	chr1:146376660|146387546:+	SEC22B4P	SEC22 homolog B4, pseudogene	pseudogene	no	.	1.912	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A7_UP_LS0011	chr5:1130416|1130567:-	SLC12A7	solute carrier family 12 member 7	protein coding gene	no	.	3.138	1.094	0.000	0.075(723)	0.023(16)	0(0)	non tumor-specific	nAS	no
AL590094.1_LS002	chr1:90789487|90831930:-	AL590094.1	-	lncRNA gene	no	ENST00000634619.1;ENST00000435649.2	1.355	0.701	1.140	0.432(4140)	0.452(317)	0.39(6782)	non tumor-specific	nAS	yes
RBM41_LS018	chrX:107115556|107115862:-	RBM41	RNA binding motif protein 41	protein coding gene	no	ENST00000372487.5;ENST00000495517.5;ENST00000372479.7;ENST00000434854.1;ENST00000485676.5;ENST00000471079.1	8.314	4.829	7.913	0.955(9147)	0.987(693)	0.968(16825)	non tumor-specific	alt_3prime	yes
UN_FAM217A_LS0021	chr6:4061700|4062215:+	FAM217A	family with sequence similarity 217 member A	protein coding gene	no	.	3.664	1.177	0.000	0.046(436)	0.041(29)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_MAP3K13_LS0001	chr3:185283124|185285517:+	MAP3K13	mitogen-activated protein kinase kinase kinase 13	protein coding gene	no	.	2.090	0.077	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
KDR_LS020	chr4:55106810|55107737:-	KDR	kinase insert domain receptor	protein coding gene	no	ENST00000645273.1;ENST00000263923.5;ENST00000647068.1;ENST00000512566.1	14.707	17.138	7.552	0.797(7635)	0.95(667)	0.878(15262)	non tumor-specific	nAS	yes
UN_BNIP3L_LS0020	chr8:26412483|26412518:+	BNIP3L	BCL2 interacting protein 3 like	protein coding gene	yes	.	20.645	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRAV13-2_LS0001	chr14:21918603|21918712:+	TRAV13-2	T cell receptor alpha variable 13-2	no	no	.	3.478	0.067	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNHD1_LS060	chr11:6568242|6568454:+	DNHD1	dynein heavy chain domain 1	protein coding gene	no	ENST00000254579.10;ENST00000527990.6;ENST00000529821.5;ENST00000533635.5;ENST00000525883.5;ENST00000530197.5;ENST00000532467.1	2.002	0.640	7.678	0.518(4967)	0.405(284)	0.966(16786)	non tumor-specific	nAS	yes
UN_UNC5CL_LS0004	chr6:41028595|41030376:-	UNC5CL	unc-5 family C-terminal like	protein coding gene	no	.	4.086	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RHOF_LS0058	chr12:121796242|121799585:-	RHOF	ras homolog family member F, filopodia associated	protein coding gene	no	.	2.630	1.119	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
C15orf48_LS006	chr15:45432132|45448549:+	C15orf48	chromosome 15 open reading frame 48	protein coding gene	no	ENST00000558435.5	0.256	0.142	0.754	0.099(951)	0.088(62)	0.074(1291)	non tumor-specific	nAS	yes
UN_C19orf81_UP_LS0016	chr19:50487539|50495303:+	C19orf81	chromosome 19 open reading frame 81	protein coding gene	no	.	2.483	0.279	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	nAS	no
RAB41_LS005	chrX:70283373|70283513:+	RAB41	RAB43, member RAS oncogene family	protein coding gene	no	ENST00000374473.6;ENST00000276066.4	0.345	0.000	0.752	0.001(6)	0(0)	0.025(430)	non tumor-specific	nAS	yes
GOLGA6L10_LS005	chr15:82344974|82345014:-	GOLGA6L10	golgin A6 family like 10	protein coding gene	no	ENST00000619556.4	2.843	0.000	0.655	0.001(11)	0(0)	0.058(1004)	non tumor-specific	nAS	yes
UN_CTNNA2_LS0116	chr2:80304081|80304173:-	CTNNA2	catenin alpha 2	protein coding gene	yes	.	1.717	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
CR381653.1_LS002	chr21:9325100|9325874:+	CR381653.1	-	lncRNA gene	no	ENST00000624052.1	0.160	0.027	0.642	0.024(231)	0.011(8)	0.006(100)	non tumor-specific	nAS	yes
UN_PTK2_LS0054	chr8:140864399|140874463:-	PTK2	protein tyrosine kinase 2	protein coding gene	no	.	2.401	0.164	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PIAS3_LS0030	chr1:145857006|145858855:-	PIAS3	protein inhibitor of activated STAT 3	protein coding gene	no	.	1.593	0.114	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SCAMP5_LS0009	chr15:74995673|75007413:+	SCAMP5	secretory carrier membrane protein 5	protein coding gene	no	.	0.589	0.198	0.000	0.003(30)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
WDR7_LS008	chr18:56682853|56685956:+	WDR7	WD repeat domain 7	protein coding gene	no	ENST00000357574.7;ENST00000254442.7	5.708	4.631	5.189	0.672(6439)	0.877(616)	0.934(16231)	non tumor-specific	nAS	yes
DIRC3_LS015	chr2:217739575|217756021:-	DIRC3	disrupted in renal carcinoma 3	lncRNA gene	no	ENST00000423123.1	2.009	0.000	0.692	0(4)	0(0)	0.017(298)	non tumor-specific	exon_skip	yes
DHX16_LS023	chr6:30671274|30672956:-	DHX16	DEAH-box helicase 16	protein coding gene	no	ENST00000415603.1	0.889	0.437	0.734	0.575(5506)	0.557(391)	0.296(5146)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_GOLGA8B_LS0022	chr15:34545455|34546935:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	.	0.469	0.010	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SIPA1L1_LS0045	chr14:71503668|71512743:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	.	2.988	0.265	0.000	0.009(89)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LINC00996_LS0006	chr7:150435370|150442549:+	LINC00996	long intergenic non-protein coding RNA 996	lncRNA gene	no	.	2.757	1.089	0.000	0.012(113)	0.021(15)	0(0)	non tumor-specific	nAS	no
AC023034.1_LS003	chr15:81653240|81667009:+	AC023034.1	-	lncRNA gene	no	ENST00000558153.1	0.172	0.000	0.732	0(1)	0(0)	0.009(156)	non tumor-specific	nAS	yes
UN_KDELR3_UP_LS0003	chr22:38424972|38431969:+	KDELR3	KDEL endoplasmic reticulum protein retention receptor 3	protein coding gene	no	.	4.489	0.488	0.000	0.056(537)	0.021(15)	0(0)	non tumor-specific	nAS	no
AKAP11_LS013	chr13:42317688|42319088:+	AKAP11	A-kinase anchoring protein 11	protein coding gene	no	ENST00000025301.3	24.674	21.624	17.126	0.973(9320)	0.994(698)	0.971(16875)	non tumor-specific	exon_skip	yes
LGALS9C_LS013	chr17:18487757|18491273:+	LGALS9C	galectin 9C	protein coding gene	no	ENST00000584941.5	0.288	0.184	0.721	0.118(1129)	0.15(105)	0.034(583)	non tumor-specific	exon_skip	yes
UN_KALRN_LS0006	chr3:124094149|124162709:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	1.125	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_DAXX_LS0018	chr6:33319854|33321719:-	DAXX	death domain associated protein	protein coding gene	yes	.	6.679	0.803	0.000	0.009(87)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LRP4_LS018	chr11:46875681|46875804:-	LRP4	LDL receptor related protein 4	protein coding gene	no	ENST00000378623.5	12.540	5.572	4.162	0.646(6185)	0.758(532)	0.845(14694)	non tumor-specific	nAS	yes
SPATA6L_LS006	chr9:4600809|4605347:-	SPATA6L	spermatogenesis associated 6 like	protein coding gene	no	ENST00000381890.9	0.318	0.224	0.707	0.1(954)	0.184(129)	0.027(468)	non tumor-specific	exon_skip	yes
UN_PARP10_LS0269	chr8:143992928|143992967:-	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	26.198	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS1261	chr11:62529378|62530369:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	13.150	0.905	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
LILRB3_LS017	chr19:54221786|54221914:-	LILRB3	leukocyte immunoglobulin like receptor B3	protein coding gene	no	ENST00000414379.5	0.174	0.062	0.926	0.016(156)	0.019(13)	0.119(2069)	non tumor-specific	nAS	yes
PALD1_LS015	chr10:70539762|70541102:+	PALD1	phosphatase domain containing paladin 1	protein coding gene	no	ENST00000263563.6	15.456	8.724	12.319	0.928(8895)	0.946(664)	0.922(16030)	non tumor-specific	nAS	yes
NECAB3_LS006	chr20:33658554|33658722:-	NECAB3	N-terminal EF-hand calcium binding protein 3	protein coding gene	no	ENST00000477778.5;ENST00000246190.10;ENST00000375238.8;ENST00000606525.5;ENST00000488489.5;ENST00000483813.5;ENST00000485399.5;ENST00000485976.5;ENST00000478237.5;ENST00000494174.5;ENST00000463246.5;ENST00000480994.5;ENST00000606690.5;ENST00000439478.5;ENST00000607805.5;ENST00000477778.5;ENST00000246190.10;ENST00000375238.8;ENST00000606525.5;ENST00000488489.5;ENST00000483813.5;ENST00000485399.5;ENST00000485976.5;ENST00000478237.5;ENST00000494174.5;ENST00000463246.5;ENST00000480994.5;ENST00000606690.5;ENST00000439478.5;ENST00000607805.5	8.779	6.581	53.246	0.994(9524)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC087473.1_LS0005	chr15:38202852|38204039:-	AC087473.1	-	lncRNA gene	no	.	2.517	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC026422.1_UP_LS0026	chr5:123859848|123865667:-	AC026422.1	-	lncRNA gene	no	.	4.405	8.790	0.000	0.036(349)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCAF4_LS011	chr21:31693484|31694204:-	SCAF4	SR-related CTD associated factor 4	protein coding gene	no	ENST00000286835.11;ENST00000399804.5;ENST00000434667.3;ENST00000467731.1	36.354	18.829	24.404	0.975(9343)	0.991(696)	0.978(17004)	non tumor-specific	alt_5prime	yes
MYO9B_LS052	chr19:17211774|17211895:+	MYO9B	myosin IXB	protein coding gene	no	ENST00000594824.5;ENST00000595641.5;ENST00000597881.1	11.746	4.170	11.372	0.861(8249)	0.848(595)	0.973(16920)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
DHRS12_LS002	chr13:51768729|51769156:-	DHRS12	dehydrogenase/reductase 12	protein coding gene	no	ENST00000469957.5	0.246	0.256	0.892	0.261(2496)	0.382(268)	0.437(7601)	non tumor-specific	alt_3prime;intron_retention	yes
SLC44A5_LS015	chr1:75227857|75233986:-	SLC44A5	solute carrier family 44 member 5	protein coding gene	no	ENST00000370859.7;ENST00000370855.5	5.733	2.291	1.273	0.387(3709)	0.355(249)	0.358(6226)	non tumor-specific	nAS	yes
TANC2_LS025	chr17:63411686|63411998:+	TANC2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein coding gene	no	ENST00000424789.6;ENST00000389520.8;ENST00000583356.5	6.249	3.675	3.207	0.689(6602)	0.779(547)	0.876(15224)	non tumor-specific	intron_retention	yes
AC025419.1_LS021	chr12:65626685|65642039:-	AC025419.1	-	lncRNA gene	no	ENST00000535315.5	0.052	0.000	0.490	0.02(195)	0(0)	0.009(161)	non tumor-specific	nAS	yes
UN_ANKHD1-EIF4EBP3_LS0068	chr5:140541562|140542172:+	ANKHD1-EIF4EBP3	ANKHD1-EIF4EBP3 readthrough	protein coding gene	no	.	2.365	3.881	0.000	0.006(54)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_RABGAP1L_LS0028	chr1:174305127|174320503:+	RABGAP1L	RAB GTPase activating protein 1 like	protein coding gene	no	.	2.680	0.676	0.000	0.066(628)	0.04(28)	0(0)	non tumor-specific	nAS	no
CYP1B1-AS1_LS031	chr2:38131614|38147817:+	CYP1B1-AS1	CYP1B1 antisense RNA 1	lncRNA gene	no	ENST00000630542.2	0.402	0.233	0.925	0.097(933)	0.209(147)	0.369(6421)	non tumor-specific	nAS	yes
TAOK1_LS009	chr17:29482288|29489664:+	TAOK1	TAO kinase 1	protein coding gene	no	ENST00000261716.7;ENST00000536202.1;ENST00000577583.1	7.622	5.792	6.004	0.802(7680)	0.913(641)	0.946(16447)	non tumor-specific	nAS	yes
HERC2P4_LS023	chr16:32179560|32180585:-	HERC2P4	hect domain and RLD 2 pseudogene 4	pseudogene	no	ENST00000566902.5	0.465	0.143	0.712	0.002(17)	0.001(1)	0.012(205)	non tumor-specific	nAS	yes
UN_LDB2_LS0007	chr4:16505985|16508535:-	LDB2	LIM domain binding 2	protein coding gene	no	.	3.462	1.540	0.000	0.009(87)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
ERCC8_LS019	chr5:60904873|60918265:-	ERCC8	ERCC excision repair 8, CSA ubiquitin ligase complex subunit	protein coding gene	no	ENST00000381118.7;ENST00000265038.9;ENST00000643034.1;ENST00000647486.1;ENST00000495985.5;ENST00000439176.5;ENST00000497892.5	11.133	5.875	5.129	0.963(9230)	0.972(682)	0.955(16597)	non tumor-specific	exon_skip	yes
UN_KCNT1_LS0009	chr9:135708467|135711877:-	KCNT1	potassium sodium-activated channel subfamily T member 1	protein coding gene	no	.	2.836	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SRPX2_LS007	chrX:100650255|100650785:+	SRPX2	sushi repeat containing protein X-linked 2	protein coding gene	no	ENST00000638319.1	0.825	0.000	0.628	0.001(5)	0(0)	0.054(931)	non tumor-specific	intron_retention	yes
HOXA3_LS012	chr7:27122642|27126886:-	HOXA3	homeobox A3	protein coding gene	no	ENST00000612286.4;ENST00000317201.6;ENST00000612286.4;ENST00000317201.6;ENST00000612286.4;ENST00000317201.6	0.514	0.175	1.530	0.39(3739)	0.595(418)	0.442(7678)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PTRH1_LS015	chr9:127714702|127714975:-	PTRH1	peptidyl-tRNA hydrolase 1 homolog	protein coding gene	no	ENST00000423807.5;ENST00000419060.5;ENST00000543175.4;ENST00000456267.5;ENST00000416214.1	14.010	6.155	23.031	0.989(9480)	0.996(699)	0.978(17005)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RAD51B_LS036	chr14:68563618|68682937:+	RAD51B	RAD51 paralog B	protein coding gene	no	ENST00000554244.5	0.042	0.051	0.694	0.012(113)	0.027(19)	0.005(94)	non tumor-specific	exon_skip	yes
POTEI_LS002	chr2:130465772|130474378:-	POTEI	POTE ankyrin domain family member I	protein coding gene	no	ENST00000451531.6;ENST00000615053.3;ENST00000631234.1	2.983	0.122	0.732	0.037(354)	0.023(16)	0.002(36)	non tumor-specific	nAS	yes
UN_CLEC12A_LS0016	chr12:9965379|9969230:+	CLEC12A	C-type lectin domain family 12 member A	protein coding gene	no	.	10.085	0.193	0.000	0.005(45)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_NOP14_LS0024	chr4:2940955|2941109:+	NOP14	NOP14 nucleolar protein	protein coding gene	no	.	7.455	1.062	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
NCOA3_LS016	chr20:47634195|47635322:+	NCOA3	nuclear receptor coactivator 3	protein coding gene	yes	ENST00000372004.7;ENST00000371998.7;ENST00000371997.3	17.872	10.754	11.616	0.866(8294)	0.936(657)	0.955(16600)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ENTPD3-AS1_LS0004	chr3:40409224|40446534:-	ENTPD3-AS1	ENTPD3 antisense RNA 1	lncRNA gene	no	.	1.101	0.400	0.000	0.008(80)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_NPR3_LS0002	chr5:32691206|32724698:+	NPR3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	.	1.102	8.871	0.000	0.001(12)	0.098(69)	0(0)	non tumor-specific	nAS	no
GTF3C2_LS005	chr2:27328188|27328405:-	GTF3C2	general transcription factor IIIC subunit 2	protein coding gene	no	ENST00000415683.2	26.644	4.277	0.625	0.005(50)	0.004(3)	0.017(302)	non tumor-specific	intron_retention	yes
UN_LIMS2_LS0027	chr2:127640988|127641669:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	2.327	2.130	0.000	0.036(342)	0.057(40)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AL049612.1_UP_LS0089	chr6:170169422|170169699:-	AL049612.1	-	lncRNA gene	no	.	3.419	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BTLA_LS003	chr3:112469804|112471212:-	BTLA	B and T lymphocyte associated	protein coding gene	no	ENST00000334529.9	3.294	2.728	1.017	0.261(2500)	0.276(194)	0.274(4767)	non tumor-specific	exon_skip	yes
TTPAL_LS002	chr20:44475991|44479968:+	TTPAL	alpha tocopherol transfer protein like	protein coding gene	no	ENST00000372906.2	0.449	0.354	0.621	0.097(934)	0.094(66)	0.064(1121)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC027117.2_LS0022	chr8:17843763|17844886:-	AC027117.2	-	lncRNA gene	no	.	2.272	0.191	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZFAND3_UP_LS0002	chr6:37575914|37576169:+	ZFAND3	zinc finger AN1-type containing 3	protein coding gene	no	.	1.959	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL713999.1_LS0039	chr1:155173483|155175386:+	AL713999.1	-	protein coding gene	no	.	0.617	0.040	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC006994.1_UP_LS0001	chr2:210021064|210031467:+	AC006994.1	-	pseudogene	no	.	4.606	0.982	0.000	0.003(24)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AL355102.2_LS0131	chr14:96243158|96243417:-	AL355102.2	-	protein coding gene	no	.	2.848	1.778	0.000	0.01(94)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RIPOR2_LS0046	chr6:24936236|24949097:+	RIPOR2	RHO family interacting cell polarization regulator 2	protein coding gene	no	.	1.458	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
HERC6_LS001	chr4:88379120|88383185:+	HERC6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein coding gene	no	ENST00000502870.1	0.389	0.265	0.658	0.184(1761)	0.199(140)	0.075(1306)	non tumor-specific	alt_3prime;exon_skip	yes
FAM242C_LS003	chr12:54121447|54125760:-	FAM242C	family with sequence similarity 242 member C	lncRNA gene	no	ENST00000504278.1	0.313	0.203	0.742	0.229(2196)	0.292(205)	0.153(2657)	non tumor-specific	nAS	yes
UTRN_LS021	chr6:144447318|144447602:+	UTRN	utrophin	protein coding gene	no	ENST00000367545.7	10.270	13.102	7.376	0.706(6764)	0.905(635)	0.919(15977)	non tumor-specific	nAS	yes
UN_PHF21B_LS0018	chr22:44985124|44985739:-	PHF21B	PHD finger protein 21B	protein coding gene	no	.	1.894	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_HLA-C_LS0028	chr6:31269019|31269126:+	HLA-C	major histocompatibility complex, class I, C	protein coding gene	no	.	105.057	5.864	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC034195.1_LS007	chr3:3382650|3484039:-	AC034195.1	-	lncRNA gene	no	ENST00000455703.1	0.376	0.249	0.659	0.001(8)	0.004(3)	0.006(101)	non tumor-specific	nAS	yes
UN_ABCC1_LS0030	chr16:16048257|16052724:+	ABCC1	ATP binding cassette subfamily C member 1	protein coding gene	no	.	3.336	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CFDP1_LS019	chr16:75414695|75419018:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000566254.1	0.005	0.002	0.789	0.579(5550)	0.577(405)	0.287(4994)	non tumor-specific	nAS	yes
RNF175_LS009	chr4:153723458|153748645:-	RNF175	ring finger protein 175	protein coding gene	no	ENST00000503694.5;ENST00000503694.5	0.063	0.000	1.108	0.018(170)	0.003(2)	0.076(1324)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IGHV3-48_UP_LS0018	chr14:106557248|106593081:-	IGHV3-48	immunoglobulin heavy variable 3-48	no	no	.	346.070	15.724	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC245060.5_UP_LS0017	chr22:22309993|22358051:-	AC245060.5	-	lncRNA gene	no	.	3.309	0.053	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FP236383.2_LS0008	chr21:8393986|8394011:+	FP236383.2	-	lncRNA gene	no	.	31.530	49.941	0.000	0.002(21)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PRR5L_LS0059	chr11:36456178|36462342:+	PRR5L	proline rich 5 like	protein coding gene	no	.	3.540	0.418	0.000	0.048(460)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_LINC02152_UP_LS0018	chr16:8181741|8191977:+	LINC02152	long intergenic non-protein coding RNA 2152	lncRNA gene	no	.	1.670	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HLCS_UP_LS0004	chr21:37036905|37046820:-	HLCS	holocarboxylase synthetase	protein coding gene	no	.	2.874	1.147	0.000	0.012(115)	0.009(6)	0(0)	non tumor-specific	nAS	no
EEF1AKMT2_LS005	chr10:124765608|124774675:-	EEF1AKMT2	EEF1A lysine methyltransferase 2	protein coding gene	no	ENST00000466270.5;ENST00000368836.6;ENST00000464099.5;ENST00000498770.1	24.396	16.045	18.408	0.988(9462)	0.997(700)	0.976(16967)	non tumor-specific	nAS	yes
ERN2_LS044	chr16:23712078|23713095:-	ERN2	endoplasmic reticulum to nucleus signaling 2	protein coding gene	no	ENST00000569903.1	1.093	0.258	1.545	0.077(740)	0.098(69)	0.049(860)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
NADSYN1_LS034	chr11:71475622|71476201:+	NADSYN1	NAD synthetase 1	protein coding gene	no	ENST00000528509.5	0.123	0.047	2.877	0.514(4929)	0.375(263)	0.813(14130)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IQCA1_LS0014	chr2:236336082|236336757:-	IQCA1	IQ motif containing with AAA domain 1	protein coding gene	no	.	2.336	0.628	0.000	0.005(44)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_LINC01451_LS0016	chr9:136615864|136617078:-	LINC01451	long intergenic non-protein coding RNA 1451	lncRNA gene	no	.	6.283	0.898	0.000	0.124(1184)	0.046(32)	0(0)	non tumor-specific	nAS	no
UN_NFAM1_UP_LS0002	chr22:42437095|42437432:-	NFAM1	NFAT activating protein with ITAM motif 1	protein coding gene	no	.	1.899	0.171	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
MBNL2_LS003	chr13:97276409|97334276:+	MBNL2	muscleblind like splicing regulator 2	protein coding gene	no	ENST00000397601.5;ENST00000376673.7;ENST00000343600.8;ENST00000469707.5;ENST00000345429.10	35.199	43.090	27.025	0.93(8908)	0.984(691)	0.973(16909)	non tumor-specific	exon_skip	yes
UN_AC006486.1_LS0019	chr19:42240142|42248590:-	AC006486.1	-	protein coding gene	no	.	4.498	1.145	0.000	0.001(14)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC125613.1_LS0003	chr3:181535044|181582722:-	AC125613.1	-	lncRNA gene	no	.	2.670	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
TRMU_LS005	chr22:46336666|46337779:+	TRMU	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein coding gene	no	ENST00000643137.1	0.170	0.068	0.814	0.592(5671)	0.533(374)	0.172(2989)	non tumor-specific	nAS	yes
UN_DPP3_LS0016	chr11:66497477|66504588:+	DPP3	dipeptidyl peptidase 3	protein coding gene	no	.	7.194	4.413	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_SKINT1L_LS0002	chr1:48097236|48172488:+	SKINT1L	Skint1 like (pseudogene)	pseudogene	no	.	3.559	0.188	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM145_LS001	chr19:42313496|42314272:+	TMEM145	transmembrane protein 145	protein coding gene	no	ENST00000595775.5;ENST00000301204.7;ENST00000598766.1	2.250	1.325	1.568	0.345(3304)	0.048(34)	0.551(9577)	non tumor-specific	alt_5prime	yes
COLEC10_LS001	chr8:118995573|119009441:+	COLEC10	collectin subfamily member 10	protein coding gene	no	ENST00000521788.1	0.417	0.000	0.726	0.001(12)	0(0)	0.02(343)	non tumor-specific	exon_skip	yes
CPT1C_LS026	chr19:49705298|49705909:+	CPT1C	carnitine palmitoyltransferase 1C	protein coding gene	no	ENST00000323446.9;ENST00000598259.5;ENST00000599023.5;ENST00000392518.8;ENST00000598293.5;ENST00000405931.6;ENST00000595568.5;ENST00000295404.9;ENST00000596701.1;ENST00000594431.1	8.356	5.283	6.321	0.663(6353)	0.651(457)	0.901(15665)	non tumor-specific	nAS	yes
RRM2B_LS011	chr8:102226034|102232149:-	RRM2B	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein coding gene	no	ENST00000251810.7;ENST00000621845.1;ENST00000522368.5;ENST00000523957.1;ENST00000517517.1	16.912	14.880	9.511	0.923(8841)	0.98(688)	0.968(16825)	non tumor-specific	exon_skip	yes
UN_ZNF524_LS0003	chr19:55600408|55601935:+	ZNF524	zinc finger protein 524	protein coding gene	no	.	0.874	0.158	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_OPN3_UP_LS0007	chr1:241934710|241944622:-	OPN3	opsin 3	protein coding gene	no	.	1.985	0.030	0.000	0.016(152)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDH3A1_LS020	chr17:19745134|19745377:-	ALDH3A1	aldehyde dehydrogenase 3 family member A1	protein coding gene	no	ENST00000573368.5	0.102	0.070	0.666	0.047(451)	0.038(27)	0.022(374)	non tumor-specific	alt_5prime;intron_retention	yes
GTF2I_LS026	chr7:74718941|74728786:+	GTF2I	general transcription factor IIi	protein coding gene	no	ENST00000573035.5;ENST00000614986.4;ENST00000484840.5	20.701	10.947	21.389	0.976(9353)	0.987(693)	0.972(16899)	non tumor-specific	alt_5prime;exon_skip	yes
WNT5A_LS008	chr3:55480918|55489734:-	WNT5A	Wnt family member 5A	protein coding gene	yes	.;.	1.052	0.362	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GOLIM4_LS0039	chr3:168048365|168094712:-	GOLIM4	golgi integral membrane protein 4	protein coding gene	no	.	2.345	0.722	0.000	0.015(140)	0.01(7)	0(0)	non tumor-specific	nAS	no
AGAP10P_LS003	chr10:45684520|45692059:+	AGAP10P	ArfGAP with GTPase domain, ankyrin repeat and PH domain 10, pseudogene	pseudogene	no	ENST00000454844.1	2.123	0.860	0.948	0.744(7133)	0.709(498)	0.202(3506)	non tumor-specific	nAS	yes
UN_RHOA_LS0059	chr3:49360026|49360133:+	RHOA	ras homolog family member A	protein coding gene	yes	.	17.090	3.507	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERI3_LS005	chr1:44242080|44247939:-	ERI3	ERI1 exoribonuclease family member 3	protein coding gene	no	ENST00000479101.1	0.231	0.470	2.018	0.854(8184)	0.812(570)	0.868(15093)	non tumor-specific	exon_skip	yes
NDRG2_LS030	chr14:21020844|21021040:-	NDRG2	NDRG family member 2	protein coding gene	yes	ENST00000366204.6	0.087	0.002	1.092	0.223(2132)	0.248(174)	0.28(4870)	non tumor-specific	alt_5prime;intron_retention	yes
UN_PNPLA2_LS0129	chr11:824874|825088:-	PNPLA2	patatin like phospholipase domain containing 2	protein coding gene	no	.	1.348	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC025569.1_LS007	chr12:70510284|70510408:+	AC025569.1	-	lncRNA gene	no	ENST00000548687.5;ENST00000548924.5	0.165	0.000	0.699	0.024(227)	0(0)	0.015(259)	non tumor-specific	nAS	yes
UN_TEX10_LS0019	chr9:100330191|100340257:-	TEX10	testis expressed 10	protein coding gene	no	.	1.819	0.120	0.000	0.008(77)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_DHX8_LS0119	chr17:43561736|43593501:+	DHX8	DEAH-box helicase 8	protein coding gene	no	.	3.702	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
COL19A1_LS029	chr6:70145007|70146659:+	COL19A1	collagen type XIX alpha 1 chain	protein coding gene	no	ENST00000620364.4	2.467	0.908	1.043	0.039(376)	0.056(39)	0.224(3885)	non tumor-specific	nAS	yes
TSPAN9_LS019	chr12:3281817|3283045:+	TSPAN9	tetraspanin 9	protein coding gene	no	ENST00000537971.5;ENST00000011898.9	63.029	45.104	28.893	0.972(9316)	0.994(698)	0.969(16844)	non tumor-specific	alt_3prime;exon_skip	yes
PKLR_LS007	chr1:155295302|155295437:-	PKLR	pyruvate kinase L/R	protein coding gene	no	ENST00000342741.6;ENST00000392414.7;ENST00000434082.3	9.057	22.441	1.173	0.166(1590)	0.285(200)	0.17(2951)	non tumor-specific	exon_skip	yes
CELSR3_LS001	chr3:48638232|48639674:-	CELSR3	cadherin EGF LAG seven-pass G-type receptor 3	protein coding gene	no	ENST00000164024.4;ENST00000461362.5;ENST00000498057.1	5.647	1.348	3.038	0.692(6629)	0.248(174)	0.888(15442)	non tumor-specific	nAS	yes
UN_CLDN18_LS0004	chr3:138018279|138020573:-	CLDN18	claudin 18	protein coding gene	no	.	5.197	0.085	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC024597.1_UP_LS0005	chr10:62259250|62289521:+	AC024597.1	-	lncRNA gene	no	.	2.124	0.294	0.000	0.005(51)	0.01(7)	0(0)	non tumor-specific	nAS	no
ALDH3A2_LS012	chr17:19652632|19656366:+	ALDH3A2	aldehyde dehydrogenase 3 family member A2	protein coding gene	no	ENST00000446398.6;ENST00000631291.2;ENST00000176643.10;ENST00000582991.5;ENST00000581518.5;ENST00000395575.6;ENST00000584332.6;ENST00000339618.8;ENST00000579855.5;ENST00000578614.1;ENST00000630662.2;ENST00000446398.6;ENST00000631291.2;ENST00000176643.10;ENST00000582991.5;ENST00000581518.5;ENST00000395575.6;ENST00000584332.6;ENST00000339618.8;ENST00000579855.5;ENST00000578614.1;ENST00000630662.2	30.587	35.429	33.383	0.986(9451)	0.997(700)	0.978(17006)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ADAMTS20_LS016	chr12:43428799|43429617:-	ADAMTS20	ADAM metallopeptidase with thrombospondin type 1 motif 20	protein coding gene	no	ENST00000389420.7;ENST00000553158.5;ENST00000395541.3	2.620	0.000	0.824	0.032(305)	0(0)	0.011(196)	non tumor-specific	exon_skip	yes
UN_ARHGAP29_LS0006	chr1:94174749|94176590:-	ARHGAP29	Rho GTPase activating protein 29	protein coding gene	yes	.	0.303	0.251	0.000	0.049(474)	0.046(32)	0(0)	non tumor-specific	alt_5prime	no
UN_THSD7B_LS0022	chr2:137524381|137563221:+	THSD7B	thrombospondin type 1 domain containing 7B	protein coding gene	no	.	6.236	1.045	0.000	0.006(60)	0.044(31)	0(0)	non tumor-specific	nAS	no
MAP7D3_LS001	chrX:136215013|136219398:-	MAP7D3	MAP7 domain containing 3	protein coding gene	no	ENST00000370661.5	0.724	0.157	1.025	0.021(203)	0.017(12)	0.441(7674)	non tumor-specific	nAS	yes
UN_DHX29_LS0006	chr5:55261499|55262550:-	DHX29	DExH-box helicase 29	protein coding gene	no	.	6.429	2.132	0.000	0.044(426)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_C5AR1_LS0063	chr19:47311843|47316469:+	C5AR1	complement C5a receptor 1	protein coding gene	no	.	1.978	0.200	0.000	0.004(42)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
AC009950.1_LS002	chr2:230125549|230140068:+	AC009950.1	-	lncRNA gene	no	ENST00000625550.2;ENST00000630748.2;ENST00000445199.3;ENST00000625295.2	0.580	0.081	0.785	0.025(238)	0.009(6)	0.179(3109)	non tumor-specific	nAS	yes
PIK3AP1_LS011	chr10:96628493|96645473:-	PIK3AP1	phosphoinositide-3-kinase adaptor protein 1	protein coding gene	no	ENST00000339364.9;ENST00000371110.6;ENST00000468783.1	29.312	22.423	3.017	0.837(8023)	0.905(635)	0.769(13364)	non tumor-specific	nAS	yes
UN_PROX1_UP_LS0001	chr1:213546447|213731417:+	PROX1	prospero homeobox 1	protein coding gene	yes	.	3.222	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MUC13_LS0047	chr3:124927792|124927841:+	MUC13	mucin 13, cell surface associated	protein coding gene	no	.	77.451	232.289	0.000	0.015(143)	0.011(8)	0(0)	non tumor-specific	nAS	no
CENPU_LS013	chr4:184713013|184713869:-	CENPU	centromere protein U	protein coding gene	no	ENST00000506535.1	4.563	0.048	0.674	0.001(8)	0.001(1)	0.003(49)	non tumor-specific	nAS	yes
LGALS9B_LS008	chr17:20453607|20455303:-	LGALS9B	galectin 9B	protein coding gene	no	ENST00000423676.7;ENST00000324290.5;ENST00000578481.5	2.166	7.892	1.857	0.259(2486)	0.259(182)	0.157(2734)	non tumor-specific	exon_skip	yes
SPTBN2_LS005	chr11:66687918|66688004:-	SPTBN2	spectrin beta, non-erythrocytic 2	protein coding gene	no	ENST00000647510.1;ENST00000533211.5;ENST00000309996.6;ENST00000617502.4;ENST00000529997.5;ENST00000611817.4;ENST00000532650.1	47.569	51.840	7.299	0.921(8824)	0.886(622)	0.854(14842)	non tumor-specific	nAS	yes
UN_RNU2-32P_UP_LS0006	chr17:41407417|41462853:+	RNU2-32P	RNA, U2 small nuclear 32, pseudogene	small non-coding RNA gene	no	.	5.666	1.001	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANO9_LS015	chr11:428826|429570:-	ANO9	anoctamin 9	protein coding gene	no	ENST00000526142.5;ENST00000532094.5;ENST00000528927.5;ENST00000332826.6	10.797	5.749	8.105	0.753(7218)	0.813(571)	0.676(11752)	non tumor-specific	alt_5prime	yes
UN_TPCN2_LS0021	chr11:69062990|69067503:+	TPCN2	two pore segment channel 2	protein coding gene	no	.	1.974	0.172	0.000	0.009(85)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ELP2_LS057	chr18:36171160|36174485:+	ELP2	elongator acetyltransferase complex subunit 2	protein coding gene	no	ENST00000358232.10;ENST00000351393.10;ENST00000442325.6;ENST00000423854.6;ENST00000539560.5;ENST00000350494.10;ENST00000542824.5;ENST00000540766.5;ENST00000545302.5;ENST00000541748.5;ENST00000536830.1;ENST00000544274.1	23.668	15.961	90.623	0.975(9338)	0.98(688)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_MTCH1_LS0088	chr6:36968974|36969301:-	MTCH1	mitochondrial carrier 1	protein coding gene	no	.	12.153	0.526	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_SLC52A2_LS0148	chr8:144360394|144360464:-	SLC52A2	solute carrier family 52 member 2	protein coding gene	no	.	1.985	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPS16_LS0022	chr10:73250117|73250284:+	MRPS16	mitochondrial ribosomal protein S16	protein coding gene	no	.	1.728	0.243	0.000	0.007(68)	0.003(2)	0(0)	non tumor-specific	nAS	no
RIPOR1_LS030	chr16:67544830|67545376:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	ENST00000568959.1	0.577	0.344	1.021	0.79(7573)	0.774(543)	0.373(6477)	non tumor-specific	exon_skip	yes
AC008443.5_LS002	chr5:181198271|181202588:+	AC008443.5	-	lncRNA gene	no	ENST00000502812.2	0.152	0.002	0.626	0.004(34)	0.001(1)	0.001(21)	non tumor-specific	nAS	yes
MAP4K5_LS014	chr14:50442816|50443729:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000554990.5;ENST00000013125.8	33.484	23.098	35.859	0.938(8987)	0.972(682)	0.977(16987)	non tumor-specific	nAS	yes
UN_RPL7P26_UP_LS0026	chr6:17591258|17598753:-	RPL7P26	ribosomal protein L7 pseudogene 26	pseudogene	no	.	1.868	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RILPL2_LS0016	chr12:123423137|123430508:-	RILPL2	Rab interacting lysosomal protein like 2	protein coding gene	no	.	8.206	2.062	0.000	0.006(56)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CRYL1_LS0004	chr13:20404741|20412134:-	CRYL1	crystallin lambda 1	protein coding gene	no	.	2.745	0.783	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMTN_LS044	chr22:31096897|31097269:+	SMTN	smoothelin	protein coding gene	no	.;.	11.029	0.067	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_FHOD3_LS0049	chr18:36733780|36740656:+	FHOD3	formin homology 2 domain containing 3	protein coding gene	no	.	0.989	0.128	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01529_LS0005	chr19:35791138|35791223:-	LINC01529	long intergenic non-protein coding RNA 1529	pseudogene	no	.	2.306	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TRIO_LS039	chr5:14418830|14419778:+	TRIO	trio Rho guanine nucleotide exchange factor	protein coding gene	yes	ENST00000512979.1	0.011	0.005	0.524	0.364(3485)	0.295(207)	0.008(137)	non tumor-specific	nAS	yes
UN_TUBB_LS0316	chr6:30725038|30725145:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	4.369	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM6_LS005	chr11:5596914|5603608:+	TRIM6	tripartite motif containing 6	protein coding gene	no	ENST00000445329.5	0.203	0.347	0.776	0.277(2650)	0.499(350)	0.253(4398)	non tumor-specific	nAS	yes
UN_CRYBB2_LS0001	chr22:25220540|25221404:+	CRYBB2	crystallin beta B2	protein coding gene	no	.	1.524	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ADAMTS1_LS004	chr21:26840061|26840276:-	ADAMTS1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein coding gene	no	ENST00000284984.7	29.775	59.952	53.767	0.94(9007)	0.993(697)	0.956(16612)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LINC02256_LS0014	chr15:32581160|32586023:+	LINC02256	long intergenic non-protein coding RNA 2256	lncRNA gene	no	.	1.577	0.989	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	nAS	no
TOP1MT_LS043	chr8:143359404|143359875:-	TOP1MT	DNA topoisomerase I mitochondrial	protein coding gene	no	ENST00000521193.5;ENST00000520950.5;ENST00000505857.2	0.692	0.015	0.685	0.006(58)	0.001(1)	0.004(66)	non tumor-specific	exon_skip	yes
UN_AP002990.1_LS0067	chr11:62560861|62566806:-	AP002990.1	-	protein coding gene	no	.	9.063	0.493	0.000	0.007(69)	0.016(11)	0(0)	non tumor-specific	nAS	no
AL138881.1_LS001	chr6:3594535|3623648:-	AL138881.1	-	lncRNA gene	no	ENST00000443445.1	0.457	0.238	1.171	0.015(140)	0.043(30)	0.074(1278)	non tumor-specific	nAS	yes
UN_SOCS6_LS0024	chr18:70314240|70323545:+	SOCS6	suppressor of cytokine signaling 6	protein coding gene	no	.	0.769	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CAND1_LS009	chr12:67299095|67302323:+	CAND1	cullin associated and neddylation dissociated 1	protein coding gene	no	ENST00000545606.5;ENST00000540319.5;ENST00000544619.1	44.478	27.385	33.939	0.978(9370)	0.99(695)	0.977(16983)	non tumor-specific	alt_3prime	yes
UN_GLIS1_LS0022	chr1:53529952|53531356:-	GLIS1	GLIS family zinc finger 1	protein coding gene	no	.	1.986	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ASAP1_LS0041	chr8:130236994|130290001:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	1.480	0.258	0.000	0.027(261)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
UN_AC009093.10_LS0035	chr16:29269615|29290815:-	AC009093.10	-	lncRNA gene	no	.	5.254	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TINCR_LS0005	chr19:5562211|5567721:-	TINCR	TINCR ubiquitin domain containing	protein coding gene	yes	.	0.792	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC084816.1_LS001	chr12:22700094|22708656:+	AC084816.1	-	lncRNA gene	no	ENST00000629824.2	0.687	0.000	1.179	0.015(147)	0(0)	0.02(352)	non tumor-specific	nAS	yes
FBLN7_LS001	chr2:112138730|112159676:+	FBLN7	fibulin 7	protein coding gene	no	ENST00000331203.6;ENST00000409903.5;ENST00000409667.7;ENST00000409450.7	2.931	2.086	3.593	0.681(6526)	0.815(572)	0.795(13826)	non tumor-specific	exon_skip	yes
MMP28_LS014	chr17:35768379|35770067:-	MMP28	matrix metallopeptidase 28	protein coding gene	no	ENST00000619655.4;ENST00000605424.5;ENST00000615136.4;ENST00000612292.1	5.186	10.311	12.801	0.73(6991)	0.896(629)	0.863(15001)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PPARGC1A_LS007	chr4:23813125|23813690:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	ENST00000509702.5;ENST00000264867.6;ENST00000613098.4;ENST00000506055.5	11.744	14.574	3.995	0.472(4520)	0.853(599)	0.82(14245)	non tumor-specific	nAS	yes
UN_ITPRID2_LS0008	chr2:181900904|181901302:+	ITPRID2	ITPR interacting domain containing 2	protein coding gene	no	.	0.753	0.496	0.000	0.007(63)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
MUC4_LS078	chr3:195779401|195779594:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	7.377	1.155	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PCIF1_LS009	chr20:45943244|45943340:+	PCIF1	PDX1 C-terminal inhibiting factor 1	protein coding gene	no	ENST00000372409.7	75.007	46.144	55.360	0.992(9508)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TPRA1_LS014	chr3:127575809|127575940:-	TPRA1	transmembrane protein adipocyte associated 1	protein coding gene	no	ENST00000648957.1;ENST00000450633.6;ENST00000355552.7;ENST00000483868.5;ENST00000489960.5	79.467	46.278	56.955	0.997(9551)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_WDR26_LS0090	chr1:224434030|224434256:+	WDR26	WD repeat domain 26	protein coding gene	no	.	2.229	1.087	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FREM1_LS0040	chr9:14851603|14857553:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	.	3.474	0.122	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
COL13A1_LS023	chr10:69895576|69898697:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000645393.1;ENST00000520267.5;ENST00000398969.7;ENST00000522165.5	1.237	0.858	1.152	0.101(967)	0.073(51)	0.379(6593)	non tumor-specific	exon_skip	yes
TRAPPC11_LS021	chr4:183684223|183684305:+	TRAPPC11	trafficking protein particle complex 11	protein coding gene	no	ENST00000334690.10;ENST00000357207.8;ENST00000512476.1	24.656	18.790	17.315	0.94(9006)	0.986(692)	0.976(16961)	non tumor-specific	nAS	yes
ZNF780B_LS019	chr19:40055576|40056101:-	ZNF780B	zinc finger protein 780B	protein coding gene	no	ENST00000593605.1	0.197	0.143	0.785	0.192(1839)	0.258(181)	0.324(5634)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AGGF1_LS004	chr5:77034520|77035541:+	AGGF1	angiogenic factor with G-patch and FHA domains 1	protein coding gene	no	ENST00000503538.5;ENST00000312916.11;ENST00000502408.1;ENST00000506806.1	25.341	17.071	11.434	0.965(9243)	0.987(693)	0.972(16900)	non tumor-specific	nAS	yes
UN_SMAGP_LS0004	chr12:51246051|51246751:-	SMAGP	small cell adhesion glycoprotein	protein coding gene	no	.	4.840	0.573	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
APPBP2_LS010	chr17:60466459|60468439:-	APPBP2	amyloid beta precursor protein binding protein 2	protein coding gene	no	ENST00000590244.1	0.895	0.038	0.706	0.012(117)	0.028(20)	0.229(3984)	non tumor-specific	exon_skip	yes
GRK3_LS001	chr22:25564978|25565020:+	GRK3	G protein-coupled receptor kinase 3	protein coding gene	no	ENST00000619906.4	0.143	0.000	0.517	0.001(8)	0(0)	0.001(21)	non tumor-specific	nAS	yes
IL6R_LS013	chr1:154445094|154448125:+	IL6R	interleukin 6 receptor	protein coding gene	no	ENST00000476006.5	0.128	0.166	0.771	0.293(2804)	0.432(303)	0.245(4254)	non tumor-specific	exon_skip;mutex_exons	yes
FRG2FP_LS004	chr3:198110732|198111369:+	FRG2FP	FSHD region gene 2 family member F, pseudogene	pseudogene	no	ENST00000419104.1	2.759	0.052	0.781	0.009(88)	0.001(1)	0.015(253)	non tumor-specific	nAS	yes
LINC01232_LS003	chr13:99495817|99496135:-	LINC01232	long intergenic non-protein coding RNA 1232	lncRNA gene	no	ENST00000626729.2;ENST00000625369.2	2.863	0.861	1.445	0.321(3077)	0.147(103)	0.641(11147)	non tumor-specific	nAS	yes
MAGI1_LS011	chr3:65379554|65380742:-	MAGI1	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein coding gene	no	ENST00000480729.1	0.118	0.038	0.708	0.001(11)	0.001(1)	0.006(97)	non tumor-specific	nAS	yes
TTYH1_LS019	chr19:54420832|54421277:+	TTYH1	tweety family member 1	protein coding gene	no	ENST00000461302.5	0.047	0.008	1.205	0.087(832)	0.068(48)	0.136(2367)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AC011447.3_LS0044	chr19:20153893|20157984:+	AC011447.3	-	lncRNA gene	no	.	2.211	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PLEC_LS021	chr8:143930536|143931534:-	PLEC	plectin	protein coding gene	no	ENST00000345136.7;ENST00000357649.6;ENST00000354589.7;ENST00000398774.6;ENST00000322810.8;ENST00000354958.6;ENST00000356346.7;ENST00000436759.6;ENST00000527303.2;ENST00000527096.5	46.518	31.197	35.039	0.958(9181)	0.976(685)	0.978(16997)	non tumor-specific	nAS	yes
CLEC7A_LS006	chr12:10118590|10125091:-	CLEC7A	C-type lectin domain containing 7A	protein coding gene	no	.;.	1.428	0.142	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PRMT5_LS0011	chr14:22921056|22922201:-	PRMT5	protein arginine methyltransferase 5	protein coding gene	yes	.	15.166	0.715	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
SAMD4A_LS025	chr14:54784381|54784537:+	SAMD4A	sterile alpha motif domain containing 4A	protein coding gene	no	ENST00000553988.5;ENST00000555719.1	0.259	0.156	0.944	0.561(5378)	0.654(459)	0.392(6810)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
PLXDC2_LS008	chr10:20147902|20164468:+	PLXDC2	plexin domain containing 2	protein coding gene	no	ENST00000377242.7;ENST00000377252.4;ENST00000377238.2	32.484	24.724	21.169	0.917(8784)	0.98(688)	0.963(16737)	non tumor-specific	nAS	yes
UN_ATP6V0B_LS0001	chr1:43974614|43975800:+	ATP6V0B	ATPase H+ transporting V0 subunit b	protein coding gene	no	.	2.375	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip	no
FOXP4-AS1_LS005	chr6:41524225|41548378:-	FOXP4-AS1	FOXP4 antisense RNA 1	lncRNA gene	no	ENST00000454812.1	0.105	0.151	0.747	0.083(793)	0.152(107)	0.011(195)	non tumor-specific	nAS	yes
AL392046.1_LS003	chr10:35118740|35126568:-	AL392046.1	-	lncRNA gene	no	ENST00000450106.1	0.200	0.036	0.632	0.02(192)	0.017(12)	0.005(92)	non tumor-specific	nAS	yes
UN_FGFRL1_LS0082	chr4:1025685|1025725:-	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	4.104	0.476	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KCNIP4_UP_LS0007	chr4:22339753|22341020:-	KCNIP4	potassium voltage-gated channel interacting protein 4	protein coding gene	no	.	0.952	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
HSPE1P25_LS001	chr1:77853444|77853733:+	HSPE1P25	heat shock protein family E (Hsp10) member 1 pseudogene 25	pseudogene	no	ENST00000455484.2	0.066	0.000	0.693	0(2)	0(0)	0.145(2515)	non tumor-specific	nAS	yes
WDR45_LS030	chrX:49076750|49077837:-	WDR45	WD repeat domain 45	protein coding gene	no	ENST00000485908.6;ENST00000396681.9;ENST00000476728.5;ENST00000485908.6;ENST00000396681.9;ENST00000476728.5;ENST00000485908.6;ENST00000396681.9;ENST00000476728.5	0.640	0.768	9.755	0.975(9344)	0.991(696)	0.968(16829)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SYAP1_LS0052	chrX:16764597|16764932:+	SYAP1	synapse associated protein 1	protein coding gene	no	.	2.061	0.120	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
ASPH_LS012	chr8:61567318|61576772:-	ASPH	aspartate beta-hydroxylase	protein coding gene	no	ENST00000379454.8;ENST00000541428.5;ENST00000524173.5	7.583	11.016	18.323	0.902(8641)	0.96(674)	0.972(16891)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PFN1_LS0024	chr17:4945834|4945899:+	PFN1	profilin 1	protein coding gene	yes	.	13.081	5.846	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IQSEC2_LS0030	chrX:53266884|53266969:-	IQSEC2	IQ motif and Sec7 domain ArfGEF 2	protein coding gene	no	.	1.791	0.143	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
HPS5_LS001	chr11:18279942|18280509:-	HPS5	HPS5 biogenesis of lysosomal organelles complex 2 subunit 2	protein coding gene	no	ENST00000537258.1	0.354	0.241	0.820	0.336(3219)	0.454(319)	0.327(5687)	non tumor-specific	exon_skip	yes
UN_NAA38_LS0005	chr17:7857198|7857288:-	NAA38	N-alpha-acetyltransferase 38, NatC auxiliary subunit	protein coding gene	no	.	15.142	3.380	0.000	0.011(102)	0.011(8)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
SCN10A_LS005	chr3:38710897|38712161:-	SCN10A	sodium voltage-gated channel alpha subunit 10	protein coding gene	no	ENST00000449082.3;ENST00000643108.1;ENST00000644826.1;ENST00000643924.1	2.388	0.000	0.675	0(2)	0(0)	0.017(299)	non tumor-specific	nAS	yes
EXOSC1_LS010	chr10:97437750|97443237:-	EXOSC1	exosome component 1	protein coding gene	no	ENST00000370884.5	0.213	0.277	0.611	0.793(7595)	0.815(572)	0.016(270)	non tumor-specific	exon_skip;mutex_exons	yes
UGT2B17_LS005	chr4:68565720|68567761:-	UGT2B17	UDP glucuronosyltransferase family 2 member B17	protein coding gene	no	ENST00000317746.2	4.706	67.297	1.289	0.234(2243)	0.305(214)	0.124(2148)	non tumor-specific	nAS	yes
UN_FBN1_LS0011	chr15:48415881|48417001:+	FBN1	fibrillin 1	protein coding gene	no	.	6.364	0.383	0.000	0.013(121)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TMEM231P1_LS0006	chr16:75500302|75504681:-	TMEM231P1	TMEM231 pseudogene 1	pseudogene	no	.	1.602	0.833	0.000	0.016(155)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_YTHDC2_LS0018	chr5:113554032|113556052:+	YTHDC2	YTH domain containing 2	protein coding gene	no	.	1.280	0.274	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_SPACA6_LS0009	chr19:51701726|51701967:+	SPACA6	sperm acrosome associated 6	protein coding gene	no	.	1.103	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AL138921.1_LS004	chr10:100233443|100233953:+	AL138921.1	-	lncRNA gene	no	ENST00000444359.1	0.401	0.000	0.689	0.003(26)	0(0)	0.094(1627)	non tumor-specific	nAS	yes
DOCK5_LS049	chr8:25384998|25389091:+	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	.;.	2.232	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PLEKHA1_LS006	chr10:122374961|122393181:+	PLEKHA1	pleckstrin homology domain containing A1	protein coding gene	no	.;.	0.992	0.258	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GRID1_LS0005	chr10:85613146|85613407:-	GRID1	glutamate ionotropic receptor delta type subunit 1	protein coding gene	no	.	2.806	0.762	0.000	0.158(1510)	0.125(88)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF41_LS002	chrX:47456016|47456272:-	ZNF41	zinc finger protein 41	protein coding gene	no	ENST00000313116.11;ENST00000377065.8;ENST00000432977.1;ENST00000465311.1	6.217	4.259	5.324	0.886(8491)	0.952(668)	0.958(16657)	non tumor-specific	nAS	yes
UN_RNF227_LS0006	chr17:7915940|7916184:-	RNF227	ring finger protein 227	protein coding gene	no	.	0.831	0.357	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM135A_LS020	chr6:70481027|70482001:+	FAM135A	family with sequence similarity 135 member A	protein coding gene	no	ENST00000418814.6;ENST00000505769.5;ENST00000515323.5;ENST00000457062.6;ENST00000361499.7;ENST00000370479.7;ENST00000194672.11;ENST00000505868.1;ENST00000393299.6	8.554	8.341	6.414	0.79(7566)	0.877(616)	0.936(16270)	non tumor-specific	nAS	yes
TCEA3_LS007	chr1:23384417|23387273:-	TCEA3	transcription elongation factor A3	protein coding gene	no	ENST00000450454.6;ENST00000476978.2	135.027	136.943	64.487	0.97(9289)	0.997(700)	0.975(16943)	non tumor-specific	alt_3prime;exon_skip	yes
PFDN4_LS006	chr20:54208558|54208835:+	PFDN4	prefoldin subunit 4	protein coding gene	no	ENST00000487129.1	0.080	0.086	0.715	0.198(1897)	0.226(159)	0.138(2401)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPL4_LS0097	chr15:66501134|66501375:-	RPL4	ribosomal protein L4	protein coding gene	no	.	1065.336	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AGRN_LS0279	chr1:1055432|1055609:-	AGRN	agrin	protein coding gene	yes	.	0.940	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NAA20_LS0004	chr20:20026919|20032512:+	NAA20	N-alpha-acetyltransferase 20, NatB catalytic subunit	protein coding gene	no	.	22.976	6.785	0.000	0.064(610)	0.074(52)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LTBP2_LS038	chr14:74551350|74552187:-	LTBP2	latent transforming growth factor beta binding protein 3	protein coding gene	no	ENST00000261978.8;ENST00000553939.5;ENST00000556690.5	21.188	23.322	10.604	0.79(7565)	0.922(647)	0.836(14535)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CCDC18-AS1_LS0038	chr1:93315266|93324635:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	.	1.230	0.076	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_INVS_UP_LS0003	chr9:99973145|99975639:+	INVS	inversin	protein coding gene	no	.	11.690	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AMY1A_LS011	chr1:103663011|103663435:+	AMY1A	amylase alpha 1A	protein coding gene	no	ENST00000494409.1	2.090	0.983	0.850	0.008(80)	0.013(9)	0.031(542)	non tumor-specific	exon_skip	yes
FAM170A_LS002	chr5:119629838|119633960:+	FAM170A	family with sequence similarity 170 member A	protein coding gene	no	ENST00000620555.4;ENST00000504819.5;ENST00000379555.7	0.448	0.000	0.727	0.001(8)	0(0)	0.003(59)	non tumor-specific	nAS	yes
UN_TJP2_LS0044	chr9:69221144|69221277:-	TJP2	tight junction protein 2	protein coding gene	no	.	1.463	0.725	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC009646.1_UP_LS0006	chr8:52941101|52941729:+	AC009646.1	-	pseudogene	no	.	7.292	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRTC1_LS0006	chr19:18705567|18721442:-	CRTC1	CREB regulated transcription coactivator 1	protein coding gene	yes	.	3.765	1.021	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
CFAP61_LS024	chr20:20169460|20171781:+	CFAP61	cilia and flagella associated protein 61	protein coding gene	no	ENST00000377306.5;ENST00000451767.6	1.478	0.129	1.104	0.06(574)	0.046(32)	0.174(3019)	non tumor-specific	nAS	yes
JAG1_LS033	chr20:10673006|10673450:-	JAG1	jagged canonical Notch ligand 1	protein coding gene	no	ENST00000254958.10	11.480	8.906	8.398	0.873(8364)	0.939(659)	0.901(15653)	non tumor-specific	nAS	yes
UN_AC023512.1_UP_LS0011	chr12:16809399|16892338:+	AC023512.1	-	pseudogene	no	.	3.224	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XPR1_LS0037	chr1:180860800|180872746:-	XPR1	xenotropic and polytropic retrovirus receptor 1	protein coding gene	no	.	3.991	1.065	0.000	0.113(1081)	0.087(61)	0(0)	non tumor-specific	nAS	no
EAPP_LS001	chr14:34516586|34524697:-	EAPP	E2F associated phosphoprotein	protein coding gene	no	ENST00000250454.7;ENST00000554792.1	119.012	82.199	63.598	0.987(9455)	0.99(695)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_THSD4_LS0147	chr15:71747933|71748421:+	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	.	1.037	0.940	0.000	0.007(69)	0.019(13)	0(0)	non tumor-specific	alt_5prime	no
UN_AC135048.1_LS0003	chr16:30948797|30949289:+	AC135048.1	-	lncRNA gene	no	.	3.285	0.022	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ERF_LS0193	chr19:42250565|42250679:-	ERF	eukaryotic translation termination factor 1	protein coding gene	yes	.	3.550	0.134	0.000	0.013(125)	0.001(1)	0(0)	non tumor-specific	nAS	no
SUGP2_LS044	chr19:19019229|19024619:-	SUGP2	SURP and G-patch domain containing 2	protein coding gene	no	ENST00000452918.6;ENST00000594773.5;ENST00000330854.15;ENST00000337018.10;ENST00000600239.5;ENST00000601879.5;ENST00000600377.1;ENST00000598240.1;ENST00000452918.6;ENST00000594773.5;ENST00000330854.15;ENST00000337018.10;ENST00000600239.5;ENST00000601879.5;ENST00000600377.1;ENST00000598240.1	42.206	24.660	69.939	0.988(9469)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ANGEL1_LS0006	chr14:76787967|76788051:+	ANGEL1	angel homolog 1	protein coding gene	no	.	1.888	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ANKRD20A8P_LS014	chr2:94832091|94836060:-	ANKRD20A8P	ankyrin repeat domain 20 family member A8, pseudogene	pseudogene	no	ENST00000432432.7	1.106	0.166	1.092	0.007(71)	0.028(20)	0.078(1353)	non tumor-specific	nAS	yes
UN_CA5BP1_LS0005	chrX:15675024|15688661:+	CA5BP1	carbonic anhydrase 5B pseudogene 1	pseudogene	no	.	1.129	0.180	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZCCHC7_LS0028	chr9:37160783|37161473:+	ZCCHC7	zinc finger CCHC-type containing 7	protein coding gene	no	.	4.982	1.613	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_KIAA1522_LS0174	chr1:32772063|32772290:-	KIAA1522	KIAA1522	protein coding gene	no	.	1.986	0.072	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
RGMB-AS1_LS001	chr5:98771184|98771656:-	RGMB-AS1	RGMB antisense RNA 1	lncRNA gene	no	ENST00000515003.1	0.462	0.121	0.697	0.021(197)	0.021(15)	0.066(1150)	non tumor-specific	nAS	yes
MIIP_LS010	chr1:12029894|12031266:+	MIIP	migration and invasion inhibitory protein	protein coding gene	no	.;.	23.942	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FAM178B_LS0010	chr2:96878493|96880113:-	FAM178B	family with sequence similarity 178 member B	protein coding gene	no	.	2.123	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NCOA7_LS0014	chr6:125791067|125796676:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	.	1.400	0.137	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DAXX_LS007	chr6:33320591|33321719:-	DAXX	death domain associated protein	protein coding gene	yes	ENST00000477162.1	0.213	0.073	0.754	0.679(6501)	0.623(437)	0.25(4350)	non tumor-specific	exon_skip	yes
UN_PLEC_LS0648	chr8:143925071|143925261:-	PLEC	plectin	protein coding gene	no	.	46.768	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PNPLA8_LS026	chr7:108515574|108521476:-	PNPLA8	patatin like phospholipase domain containing 8	protein coding gene	no	ENST00000257694.12	7.898	6.625	7.355	0.892(8550)	0.963(676)	0.958(16644)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SLC10A5P1_UP_LS0001	chr8:81642312|81650821:-	SLC10A5P1	SLC10A5 pseudogene 1	pseudogene	no	.	2.097	0.311	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HPS3_LS0032	chr3:149166050|149173658:-	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	.	74.253	2.228	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SCP2_LS001	chr1:52927465|52941796:+	SCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000371514.7;ENST00000478631.6;ENST00000371509.8;ENST00000407246.6;ENST00000371513.9;ENST00000528809.1;ENST00000640998.1	19.011	32.019	24.106	0.958(9176)	0.986(692)	0.975(16944)	non tumor-specific	exon_skip	yes
PRSS12_LS002	chr4:118283111|118294939:-	PRSS12	serine protease 12	protein coding gene	no	ENST00000296498.3	8.575	4.781	3.100	0.57(5461)	0.691(485)	0.574(9970)	non tumor-specific	exon_skip	yes
YEATS2_LS025	chr3:183786301|183790797:+	YEATS2	YEATS domain containing 2	protein coding gene	no	ENST00000305135.9;ENST00000432781.1	35.132	13.573	15.398	0.965(9245)	0.949(666)	0.977(16981)	non tumor-specific	alt_3prime;exon_skip	yes
STAT5A_LS016	chr17:42300281|42300715:+	STAT5A	signal transducer and activator of transcription 5A	protein coding gene	yes	ENST00000345506.8;ENST00000590949.5;ENST00000546010.6;ENST00000588868.5	33.838	27.237	6.345	0.973(9320)	0.993(697)	0.924(16062)	non tumor-specific	alt_5prime;exon_skip	yes
DNAH3_LS038	chr16:21058196|21060264:-	DNAH3	dynein axonemal heavy chain 3	protein coding gene	no	ENST00000261383.3;ENST00000572640.5	3.197	1.774	1.267	0.01(97)	0.054(38)	0.037(640)	non tumor-specific	nAS	yes
UN_IP6K3_LS0016	chr6:33739261|33746588:-	IP6K3	inositol hexakisphosphate kinase 3	protein coding gene	no	.	2.008	0.445	0.000	0.006(59)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NCOA4_LS004	chr10:46009551|46010223:-	NCOA4	nuclear receptor coactivator 4	protein coding gene	yes	ENST00000585132.5;ENST00000581486.5;ENST00000585056.5;ENST00000583565.5;ENST00000580070.5;ENST00000578454.5;ENST00000579039.2	192.983	177.098	88.194	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
PRTFDC1_LS011	chr10:24937367|24942330:-	PRTFDC1	phosphoribosyl transferase domain containing 1	protein coding gene	no	ENST00000320152.10;ENST00000376378.5;ENST00000376376.3	17.281	8.924	9.483	0.899(8609)	0.95(667)	0.923(16051)	non tumor-specific	exon_skip	yes
AL161909.2_LS001	chr9:19291443|19292275:-	AL161909.2	-	lncRNA gene	no	ENST00000417577.2	0.138	0.027	0.678	0.015(147)	0.017(12)	0.005(89)	non tumor-specific	nAS	yes
PPP2R5C_LS003	chr14:101762970|101786018:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	ENST00000556068.5;ENST00000554442.5;ENST00000328724.9;ENST00000554504.1;ENST00000553890.1	18.953	15.627	27.391	0.988(9470)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
TBP_LS012	chr6:170567009|170569612:+	TBP	TATA-box binding protein	protein coding gene	no	ENST00000540980.5;ENST00000392092.6;ENST00000616883.4;ENST00000230354.10;ENST00000540980.5;ENST00000392092.6;ENST00000616883.4;ENST00000230354.10	29.141	17.002	21.266	0.991(9492)	0.997(700)	0.978(17001)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PTK6_LS010	chr20:63534315|63534938:-	PTK6	protein tyrosine kinase 6	protein coding gene	no	ENST00000542869.2	14.082	15.425	3.117	0.575(5508)	0.618(434)	0.373(6478)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC245100.3_LS0001	chr1:148288064|148288277:+	AC245100.3	-	pseudogene	no	.	1.322	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF815P_LS0031	chr7:5849516|5854107:+	ZNF815P	zinc finger protein 815, pseudogene	pseudogene	no	.	2.402	0.644	0.000	0.069(660)	0.033(23)	0(0)	non tumor-specific	nAS	no
ATE1_LS004	chr10:121836817|121841082:-	ATE1	arginyltransferase 1	protein coding gene	no	ENST00000224652.10;ENST00000369040.7;ENST00000543447.5;ENST00000540606.5;ENST00000369043.7;ENST00000423243.5	15.842	15.195	11.984	0.954(9137)	0.98(688)	0.973(16912)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C4orf19_LS0073	chr4:37585578|37585637:+	C4orf19	chromosome 4 open reading frame 19	protein coding gene	no	.	11.145	0.181	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DMBT1_LS0116	chr10:122586383|122625277:+	DMBT1	deleted in malignant brain tumors 1	protein coding gene	yes	.	20.055	0.065	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MT1F_LS006	chr16:56659273|56660422:+	MT1F	metallothionein 1F	protein coding gene	yes	ENST00000567672.1	0.185	0.161	1.101	0.352(3368)	0.487(342)	0.245(4261)	non tumor-specific	nAS	yes
AP002812.5_LS001	chr11:77866726|77869695:-	AP002812.5	-	lncRNA gene	no	ENST00000530972.1	0.234	0.120	0.768	0.107(1028)	0.081(57)	0.253(4395)	non tumor-specific	nAS	yes
UN_PEX10_LS0069	chr1:2410451|2412473:-	PEX10	peroxisomal biogenesis factor 10	protein coding gene	no	.	0.305	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGF2_LS0194	chr11:2130219|2130241:-	IGF2	insulin like growth factor 2	protein coding gene	yes	.	853.959	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SUSD1_LS0030	chr9:112112868|112142320:-	SUSD1	sushi domain containing 1	protein coding gene	no	.	0.769	0.334	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_RNU6-1273P_UP_LS0006	chr12:50931646|50992668:+	RNU6-1273P	RNA, U6 small nuclear 1273, pseudogene	small non-coding RNA gene	no	.	17.169	7.073	0.000	0.015(142)	0.038(27)	0(0)	non tumor-specific	nAS	no
EFS_LS005	chr14:23360039|23360141:-	EFS	embryonal Fyn-associated substrate	protein coding gene	no	ENST00000216733.7;ENST00000429593.6;ENST00000351354.3	27.176	15.736	42.705	0.82(7861)	0.933(655)	0.934(16243)	non tumor-specific	alt_3prime;exon_skip	yes
REV3L_LS035	chr6:111411554|111416283:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	ENST00000434009.5;ENST00000368802.7;ENST00000368805.5;ENST00000422377.5;ENST00000435970.5;ENST00000358835.7	4.114	2.835	3.158	0.51(4891)	0.738(518)	0.847(14728)	non tumor-specific	nAS	yes
COL11A1_LS026	chr1:102940434|102946849:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	ENST00000370096.8;ENST00000358392.6;ENST00000353414.8;ENST00000635193.1;ENST00000512756.5	14.389	4.847	2.542	0.496(4756)	0.09(63)	0.468(8131)	non tumor-specific	nAS	yes
CSGALNACT1_LS020	chr8:19588023|19601771:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000524112.1	0.161	0.077	0.745	0.133(1273)	0.238(167)	0.144(2496)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PILRB_LS0043	chr7:100359537|100367002:+	PILRB	paired immunoglobin like type 2 receptor beta	protein coding gene	no	.	13.383	0.876	0.000	0.023(217)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
PSME4_LS040	chr2:53925689|53925959:-	PSME4	proteasome activator subunit 4	protein coding gene	no	ENST00000404125.5	21.073	12.979	11.604	0.903(8653)	0.972(682)	0.965(16771)	non tumor-specific	exon_skip	yes
CLEC2D_LS001	chr12:9665112|9680923:+	CLEC2D	C-type lectin domain family 2 member D	protein coding gene	no	ENST00000536355.5	0.066	0.063	0.792	0.15(1438)	0.124(87)	0.243(4231)	non tumor-specific	nAS	yes
UN_AP5Z1_LS0005	chr7:4781754|4782796:+	AP5Z1	adaptor related protein complex 5 subunit zeta 1	protein coding gene	no	.	3.081	0.380	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CUL4A_LS013	chr13:113229519|113233153:+	CUL4A	cullin 4A	protein coding gene	yes	ENST00000326335.8	0.783	0.280	0.605	0.047(452)	0.033(23)	0.035(604)	non tumor-specific	nAS	yes
UN_HTRA1_LS0019	chr10:122489626|122506676:+	HTRA1	HtrA serine peptidase 1	protein coding gene	yes	.	26.288	3.929	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_DNM1P50_UP_LS0004	chr15:30581321|30625051:-	DNM1P50	dynamin 1 pseudogene 50	pseudogene	no	.	0.982	0.409	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	nAS	no
SLC38A6_LS013	chr14:61019580|61030445:+	SLC38A6	solute carrier family 38 member 6	protein coding gene	no	ENST00000354886.6;ENST00000267488.8;ENST00000525723.6;ENST00000491344.7;ENST00000451406.5;ENST00000527591.5;ENST00000529345.6;ENST00000524402.6;ENST00000526105.5;ENST00000528350.5;ENST00000554072.1;ENST00000534758.1	4.245	2.522	6.345	0.972(9316)	0.976(685)	0.959(16673)	non tumor-specific	alt_3prime;exon_skip	yes
CDK1_LS013	chr10:60792053|60792123:+	CDK1	cyclin dependent kinase 1	protein coding gene	yes	ENST00000614696.4	6.914	2.056	0.666	0.785(7522)	0.459(322)	0.069(1200)	non tumor-specific	alt_3prime	yes
UN_PERP_LS0025	chr6:138091413|138091556:+	PERP	p53 apoptosis effector related to PMP22	protein coding gene	no	.	7.509	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00607_LS006	chr2:215622761|215624112:-	LINC00607	long intergenic non-protein coding RNA 607	lncRNA gene	no	ENST00000445174.5;ENST00000423530.5	4.417	0.195	0.767	0.008(76)	0.007(5)	0.135(2348)	non tumor-specific	nAS	yes
UN_FGD1_UP_LS0040	chrX:54565565|54566052:-	FGD1	FYVE, RhoGEF and PH domain containing 1	protein coding gene	no	.	0.354	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BRD4_LS0129	chr19:15273133|15273322:-	BRD4	bromodomain containing 4	protein coding gene	yes	.	1.376	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAP4_LS0171	chr3:48056485|48056663:+	MAP4	microtubule associated protein 4	protein coding gene	no	.	1.808	1.220	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM30A_LS001	chr14:105918213|105921063:+	FAM30A	family with sequence similarity 30 member A	lncRNA gene	no	.;.	3.624	0.326	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL590385.2_LS0073	chr1:161599806|161601240:+	AL590385.2	-	lncRNA gene	no	.	3.716	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF145_LS0017	chr5:159194824|159209231:-	RNF145	ring finger protein 145	protein coding gene	no	.	10.324	0.364	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_DOCK5_LS0045	chr8:25350901|25361469:-	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	.	3.168	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
SLC4A8_LS020	chr12:51458650|51459951:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000535225.6;ENST00000358657.7;ENST00000547697.6;ENST00000604314.5;ENST00000453097.6;ENST00000319957.10;ENST00000514353.7;ENST00000551071.5	4.337	2.429	1.671	0.256(2457)	0.318(223)	0.505(8777)	non tumor-specific	nAS	yes
ZXDC_LS014	chr3:126441946|126461535:-	ZXDC	ZXD family zinc finger C	protein coding gene	no	.;.;.	2.194	0.486	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RBM39_LS059	chr20:35734257|35738968:-	RBM39	RNA binding motif protein 39	protein coding gene	no	ENST00000429968.5;ENST00000412738.5;ENST00000442447.5;ENST00000487604.1;ENST00000429968.5;ENST00000412738.5;ENST00000442447.5;ENST00000487604.1	1.052	0.674	7.757	0.83(7951)	0.873(613)	0.959(16674)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BOK_LS0014	chr2:241558993|241562348:+	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	0.868	0.230	0.000	0.081(780)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_EPB41L1_LS0007	chr20:36091875|36109733:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	.	0.698	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RIPK2_LS011	chr8:89780160|89784050:+	RIPK2	receptor interacting serine/threonine kinase 2	protein coding gene	no	ENST00000220751.4;ENST00000522965.1	41.211	16.239	19.430	0.992(9505)	0.997(700)	0.976(16962)	non tumor-specific	exon_skip	yes
UN_NR2F6_LS0041	chr19:17232615|17235527:+	NR2F6	nuclear receptor subfamily 2 group F member 6	protein coding gene	no	.	2.011	0.673	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CPB2-AS1_UP_LS0002	chr13:45669874|45713182:+	CPB2-AS1	CPB2 antisense RNA 1	lncRNA gene	no	.	2.223	0.089	0.000	0.108(1033)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_LIPA_LS0017	chr10:89228398|89243682:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	.	1.727	0.475	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
YBX3_LS028	chr12:10710114|10710534:-	YBX3	Y-box binding protein 3	protein coding gene	no	ENST00000544504.5	0.132	0.089	1.187	0.773(7406)	0.816(573)	0.425(7379)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_LINC02212_LS0006	chr5:10501378|10502504:-	LINC02212	long intergenic non-protein coding RNA 2212	lncRNA gene	no	.	4.050	0.551	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
PLEKHA1_LS013	chr10:122397974|122412920:+	PLEKHA1	pleckstrin homology domain containing A1	protein coding gene	no	ENST00000494222.5	0.370	0.205	0.730	0.454(4352)	0.577(405)	0.231(4017)	non tumor-specific	exon_skip	yes
UN_SLC5A10_LS0016	chr17:18971218|18975338:+	SLC5A10	solute carrier family 5 member 10	protein coding gene	no	.	2.915	1.102	0.000	0.028(273)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SCHLAP1_UP_LS0005	chr2:180223355|180224180:+	SCHLAP1	SWI/SNF complex antagonist associated with prostate cancer 1	lncRNA gene	no	.	2.041	0.410	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
NEB_LS116	chr2:151576354|151579338:-	NEB	nebulin	protein coding gene	no	ENST00000427231.6;ENST00000618972.4;ENST00000397345.7;ENST00000413693.5;ENST00000604864.5;ENST00000603639.5	4.326	83.772	1.007	0.075(722)	0.104(73)	0.359(6241)	non tumor-specific	nAS	yes
EPHA3_LS015	chr3:89450370|89472464:+	EPHA3	symbol withdrawn, see [HGNC:3387](/data/gene-symbol-report/#!/hgnc_id/HGNC:3387)	protein coding gene	yes	ENST00000336596.6;ENST00000494014.1	10.063	5.679	3.692	0.52(4985)	0.768(539)	0.773(13442)	non tumor-specific	exon_skip	yes
MCM6_LS014	chr2:135866728|135868611:-	MCM6	minichromosome maintenance complex component 6	protein coding gene	no	ENST00000264156.2	56.986	16.226	10.958	0.973(9325)	0.98(688)	0.97(16862)	non tumor-specific	exon_skip	yes
UN_NR1H2_LS0004	chr19:50332690|50333189:-	NR1H2	nuclear receptor subfamily 1 group H member 2	protein coding gene	no	.	2.931	1.075	0.000	0.056(537)	0.145(102)	0(0)	non tumor-specific	nAS	no
MFSD12_LS010	chr19:3544732|3544809:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	ENST00000588918.5;ENST00000355415.6;ENST00000389395.7	93.741	37.377	33.725	0.986(9443)	0.977(686)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SHARPIN_LS0036	chr8:144100998|144103051:-	SHARPIN	SHANK associated RH domain interactor	protein coding gene	no	.	4.738	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC090502.3_LS002	chr12:74250581|74269309:-	AC090502.3	-	lncRNA gene	no	ENST00000552046.1	0.584	0.000	0.732	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
TEX261_LS004	chr2:70989816|70993696:-	TEX261	testis expressed 261	protein coding gene	no	ENST00000433258.5	0.841	0.444	2.689	0.926(8870)	0.923(648)	0.864(15025)	non tumor-specific	exon_skip	yes
URB1_LS013	chr21:32334334|32337094:-	URB1	URB1 ribosome biogenesis homolog	protein coding gene	no	ENST00000382751.3	18.638	9.879	11.411	0.947(9077)	0.979(687)	0.965(16765)	non tumor-specific	nAS	yes
SGO1-AS1_LS013	chr3:21041892|21042976:+	SGO1-AS1	SGO1 antisense RNA 1	lncRNA gene	no	ENST00000634837.1	3.587	0.080	0.726	0.006(55)	0.001(1)	0.103(1796)	non tumor-specific	nAS	yes
KIF20B_LS017	chr10:89725158|89726293:+	KIF20B	kinesin family member 20B	protein coding gene	no	ENST00000371728.7	2.760	0.751	0.718	0.284(2718)	0.141(99)	0.118(2056)	non tumor-specific	alt_3prime	yes
UN_B3GNT3_LS0005	chr19:17795206|17797859:+	B3GNT3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein coding gene	no	.	0.990	0.002	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FBXO22_LS017	chr15:75933030|75934240:+	FBXO22	F-box protein 22	protein coding gene	no	.;.	0.424	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_HOXD-AS2_LS0009	chr2:176136026|176136635:+	HOXD-AS2	HOXD cluster antisense RNA 2	lncRNA gene	no	.	0.663	0.061	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF213_LS002	chr16:3135109|3135318:+	ZNF213	zinc finger protein 213	protein coding gene	no	ENST00000574902.5	0.034	0.006	0.620	0.049(471)	0.034(24)	0.014(246)	non tumor-specific	intron_retention	yes
GH1_LS008	chr17:63918506|63918767:-	GH1	growth hormone 1	protein coding gene	no	ENST00000351388.8;ENST00000458650.6;ENST00000323322.9;ENST00000342364.8	0.560	0.014	5.182	0.007(70)	0.006(4)	0.465(8084)	non tumor-specific	nAS	yes
UN_AL162413.1_UP_LS0014	chr9:10950170|11046535:-	AL162413.1	-	lncRNA gene	no	.	3.401	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
TXNRD1_LS037	chr12:104331641|104334237:+	TXNRD1	thioredoxin reductase 1	protein coding gene	no	ENST00000525566.5;ENST00000429002.6;ENST00000503506.6;ENST00000354940.10;ENST00000397736.6;ENST00000388854.7;ENST00000526691.5;ENST00000526390.5;ENST00000529546.5;ENST00000524698.5;ENST00000527688.5;ENST00000526950.1	67.075	41.988	47.721	0.984(9425)	0.996(699)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_SRP14-AS1_LS0043	chr15:40060251|40065221:+	SRP14-AS1	SRP14 antisense RNA1 (head to head)	lncRNA gene	no	.	2.537	0.643	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MIR6724-4_UP_LS0035	chr21:8217652|8400532:+	MIR6724-4	microRNA 6724-4	small non-coding RNA gene	no	.	240.229	0.786	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
WWOX_LS003	chr16:78099999|78108423:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	ENST00000563358.5	0.738	0.353	0.711	0.239(2287)	0.313(220)	0.123(2144)	non tumor-specific	alt_5prime	yes
MYRFL_LS027	chr12:69957942|69958249:+	MYRFL	myelin regulatory factor like	protein coding gene	no	ENST00000552032.6;ENST00000547771.6;ENST00000548892.5;ENST00000535034.5;ENST00000299350.5	4.522	1.921	1.692	0.184(1766)	0.134(94)	0.462(8027)	non tumor-specific	nAS	yes
UN_ABCA1_LS0028	chr9:104816496|104817226:-	ABCA1	ATP binding cassette subfamily A member 1	protein coding gene	no	.	1.421	0.099	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;mutex_exons	no
LARP4_LS030	chr12:50440549|50441590:+	LARP4	La ribonucleoprotein 4	protein coding gene	no	ENST00000293618.12;ENST00000429001.7;ENST00000398473.6;ENST00000614335.4;ENST00000522085.5;ENST00000518444.5;ENST00000518561.5;ENST00000347328.9;ENST00000520064.2;ENST00000521120.1	12.998	9.709	10.522	0.962(9214)	0.986(692)	0.966(16785)	non tumor-specific	exon_skip	yes
DNAH17_LS081	chr17:78532736|78537299:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6	2.918	0.222	0.794	0.057(547)	0.011(8)	0.057(984)	non tumor-specific	nAS	yes
UN_CBFA2T2_LS0026	chr20:33550764|33571686:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	.	0.831	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC092892.1_UP_LS0005	chr3:112596616|112596820:+	AC092892.1	-	lncRNA gene	no	.	1.980	0.084	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MCCC1_LS0047	chr3:183072487|183092409:-	MCCC1	methylcrotonoyl-CoA carboxylase 1	protein coding gene	no	.	13.826	4.038	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CD151_LS039	chr11:837618|837942:+	CD151	CD151 molecule (Raph blood group)	protein coding gene	no	ENST00000397420.8;ENST00000524748.6;ENST00000397421.5;ENST00000322008.9;ENST00000645878.1;ENST00000532045.6;ENST00000530726.5;ENST00000532075.1	554.161	367.162	500.834	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_INTS4P1_UP_LS0004	chr7:65091952|65103355:+	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	2.484	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GOLPH3L_UP_LS0010	chr1:150719538|150729142:-	GOLPH3L	golgi phosphoprotein 3 like	protein coding gene	no	.	3.038	0.862	0.000	0.066(632)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AC126177.6_LS0001	chr12:107881573|107882149:-	AC126177.6	-	pseudogene	no	.	0.700	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MEF2A_UP_LS0009	chr15:99467062|99468986:+	MEF2A	myocyte enhancer factor 2A	protein coding gene	no	.	3.154	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
HERC1_LS028	chr15:63643058|63643404:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6	16.427	15.627	27.862	0.915(8766)	0.973(683)	0.978(17007)	non tumor-specific	nAS	yes
UN_CD74_LS0288	chr5:150404746|150406268:+	CD74	CD74 molecule	protein coding gene	no	.	22.630	1.900	0.000	0.02(194)	0.011(8)	0(0)	non tumor-specific	nAS	no
NPHS1_LS028	chr19:35851089|35851262:-	NPHS1	NPHS1 adhesion molecule, nephrin	protein coding gene	no	ENST00000378910.9;ENST00000353632.6	10.832	10.312	1.326	0.032(307)	0.155(109)	0.099(1724)	non tumor-specific	nAS	yes
UN_PRSS12_LS0011	chr4:118298938|118303837:-	PRSS12	serine protease 12	protein coding gene	no	.	5.820	1.150	0.000	0.011(103)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PEBP4_LS0046	chr8:22987563|22992028:+	PEBP4	phosphatidylethanolamine binding protein 4	protein coding gene	no	.	0.908	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
RUVBL2_LS019	chr19:49001590|49003279:+	RUVBL2	RuvB like AAA ATPase 2	protein coding gene	no	ENST00000593570.5	0.153	0.013	0.632	0.038(365)	0.028(20)	0.004(67)	non tumor-specific	exon_skip	yes
UN_IFITM3_LS0024	chr11:319924|319947:+	IFITM3	interferon induced transmembrane protein 3	protein coding gene	no	.	9.538	2.718	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF667_LS0019	chr19:56472187|56472320:-	ZNF667	zinc finger protein 667	protein coding gene	no	.	0.769	0.114	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
TTC6_LS020	chr14:37753235|37787468:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000553443.5	3.430	1.413	1.551	0.122(1170)	0.157(110)	0.157(2733)	non tumor-specific	exon_skip	yes
LIME1_LS008	chr20:63738367|63738876:+	LIME1	Lck interacting transmembrane adaptor 1	protein coding gene	no	ENST00000494776.1	0.092	0.064	0.759	0.185(1773)	0.162(114)	0.129(2250)	non tumor-specific	nAS	yes
UN_HSPA1L_UP_LS0018	chr6:31816022|31828148:-	HSPA1L	heat shock protein family A (Hsp70) member 1 like	protein coding gene	no	.	1.964	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EIF5B_LS0016	chr2:99371709|99376479:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	.	11.850	3.594	0.000	0.014(133)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_NAV2_LS0022	chr11:19713462|19713879:+	NAV2	neuron navigator 2	protein coding gene	no	.	1.207	0.768	0.000	0.006(54)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_NPIPA2_LS0011	chr16:14765156|14765226:-	NPIPA2	nuclear pore complex interacting protein family member A2	protein coding gene	no	.	2.608	0.846	0.000	0.068(651)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_STX17_LS0007	chr9:99911178|99915178:+	STX17	syntaxin 17	protein coding gene	no	.	1.221	0.296	0.000	0.003(32)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CDC14A_LS024	chr1:100496049|100498085:+	CDC14A	cell division cycle 14A	protein coding gene	no	ENST00000644844.1;ENST00000646665.1;ENST00000635056.2;ENST00000647203.1;ENST00000647005.1;ENST00000644676.1;ENST00000361544.11;ENST00000336454.4;ENST00000644813.1	9.680	9.614	5.262	0.813(7789)	0.91(639)	0.937(16289)	non tumor-specific	nAS	yes
VLDLR_LS007	chr9:2643750|2643837:+	VLDLR	very low density lipoprotein receptor	protein coding gene	no	ENST00000382100.7;ENST00000382099.2	25.062	18.162	13.902	0.815(7813)	0.896(629)	0.954(16574)	non tumor-specific	nAS	yes
PTCH1_LS037	chr9:95485874|95516623:-	PTCH1	patched 1	protein coding gene	yes	ENST00000551623.1;ENST00000551623.1	0.172	0.114	0.741	0.132(1269)	0.188(132)	0.032(550)	non tumor-specific	alt_5prime;exon_skip	yes
NBAS_LS026	chr2:15379831|15383215:-	NBAS	NBAS subunit of NRZ tethering complex	protein coding gene	no	ENST00000281513.9;ENST00000442506.5;ENST00000441755.5	14.614	10.870	7.970	0.917(8788)	0.976(685)	0.962(16721)	non tumor-specific	nAS	yes
UN_NOMO2_LS0364	chr16:18430868|18511613:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	49.160	11.695	0.000	0.021(204)	0.021(15)	0(0)	non tumor-specific	nAS	no
FAR2_LS008	chr12:29270638|29293300:+	FAR2	fatty acyl-CoA reductase 2	protein coding gene	no	ENST00000536681.7;ENST00000182377.8	11.109	7.102	3.323	0.759(7271)	0.802(563)	0.84(14607)	non tumor-specific	exon_skip	yes
LINC00922_LS011	chr16:65363808|65571771:-	LINC00922	long intergenic non-protein coding RNA 922	lncRNA gene	no	ENST00000569736.5;ENST00000568492.1	2.892	0.036	0.761	0.027(259)	0.004(3)	0.034(595)	non tumor-specific	nAS	yes
KCNH1_LS004	chr1:210684138|210797508:-	KCNH1	potassium voltage-gated channel subfamily H member 1	protein coding gene	no	ENST00000638357.1	1.619	0.000	0.788	0(1)	0(0)	0.008(147)	non tumor-specific	nAS	yes
UN_MRPL42P3_UP_LS0008	chr6:144124794|144125246:+	MRPL42P3	mitochondrial ribosomal protein L42 pseudogene 3	pseudogene	no	.	6.774	0.789	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GTF3C3_LS0019	chr2:196790070|196791335:-	GTF3C3	general transcription factor IIIC subunit 3	protein coding gene	no	.	5.111	1.474	0.000	0.004(34)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_CECR7_LS0018	chr22:17047426|17056972:+	CECR7	cat eye syndrome chromosome region, candidate 7	pseudogene	no	.	1.605	0.454	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
DOCK9_LS046	chr13:98860522|98863019:-	DOCK9	dedicator of cytokinesis 9	protein coding gene	no	ENST00000448493.7;ENST00000376460.5;ENST00000442173.5;ENST00000630992.2;ENST00000339416.7;ENST00000627024.2;ENST00000427887.2	9.310	8.799	21.058	0.804(7702)	0.922(647)	0.97(16863)	non tumor-specific	exon_skip	yes
PXDNL_LS013	chr8:51423731|51426646:-	PXDNL	peroxidasin like	protein coding gene	no	ENST00000356297.4	4.100	1.382	1.025	0.113(1083)	0.155(109)	0.37(6424)	non tumor-specific	nAS	yes
UN_MROH3P_LS0020	chr1:200964912|200965031:+	MROH3P	maestro heat like repeat family member 3, pseudogene	pseudogene	no	.	1.442	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ST3GAL3_LS043	chr1:43899263|43920404:+	ST3GAL3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein coding gene	no	ENST00000530581.5	0.026	0.012	0.700	0.246(2355)	0.281(197)	0.18(3123)	non tumor-specific	exon_skip	yes
UN_NCF1B_LS0009	chr7:73229689|73231811:+	NCF1B	neutrophil cytosolic factor 1B pseudogene	pseudogene	no	.	10.030	1.208	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
TNIP3_LS014	chr4:121161216|121164060:-	TNIP3	TNFAIP3 interacting protein 3	protein coding gene	no	ENST00000057513.7;ENST00000507879.5;ENST00000509841.1;ENST00000506753.1	1.115	0.486	0.867	0.249(2388)	0.171(120)	0.124(2164)	non tumor-specific	nAS	yes
UN_RNF44_LS0083	chr5:176530880|176531463:-	RNF44	ring finger protein 44	protein coding gene	no	.	4.397	1.621	0.000	0.1(958)	0.081(57)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC133041.1_LS0002	chr3:75542613|75543117:+	AC133041.1	-	pseudogene	no	.	2.207	0.252	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMEM109_LS0056	chr11:60922078|60922139:+	TMEM109	transmembrane protein 109	protein coding gene	no	.	26.551	1.357	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_TMEM87A_LS0015	chr15:42231260|42236320:-	TMEM87A	transmembrane protein 87A	protein coding gene	no	.	1.796	1.414	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FAM149A_LS003	chr4:186105642|186149173:+	FAM149A	family with sequence similarity 149 member A	protein coding gene	no	ENST00000356371.9	0.822	0.761	1.723	0.517(4957)	0.702(493)	0.489(8496)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RARG_LS0055	chr12:53213243|53213387:-	RARG	retinoic acid receptor gamma	protein coding gene	no	.	10.305	0.546	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
COL13A1_LS027	chr10:69902855|69904933:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000645393.1;ENST00000479733.5;ENST00000398978.7;ENST00000354547.7;ENST00000357811.7;ENST00000520267.5;ENST00000398969.7;ENST00000517713.5;ENST00000522165.5;ENST00000520133.5	4.178	3.085	3.425	0.457(4380)	0.452(317)	0.804(13977)	non tumor-specific	nAS	yes
UN_SHE_LS0011	chr1:154486683|154488969:-	SHE	Src homology 2 domain containing E	protein coding gene	no	.	6.444	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
BTBD3_LS002	chr20:11890954|11918334:+	BTBD3	BTB domain containing 3	protein coding gene	no	ENST00000254977.7;ENST00000449299.5	1.554	1.766	2.938	0.884(8470)	0.956(671)	0.87(15122)	non tumor-specific	alt_3prime;exon_skip	yes
INIP_LS010	chr9:112694233|112716461:-	INIP	INTS3 and NABP interacting protein	protein coding gene	no	ENST00000374242.8;ENST00000476599.2	17.761	12.426	8.161	0.987(9460)	0.993(697)	0.971(16885)	non tumor-specific	exon_skip	yes
UN_EPHB6_UP_LS0080	chr7:142792080|142802018:+	EPHB6	EPH receptor B6	protein coding gene	yes	.	14.194	11.523	0.000	0.014(138)	0.019(13)	0(0)	non tumor-specific	nAS	no
SENP5_LS002	chr3:196868073|196899666:+	SENP5	SUMO specific peptidase 5	protein coding gene	no	ENST00000419026.5	0.906	0.357	1.111	0.591(5667)	0.497(349)	0.589(10242)	non tumor-specific	exon_skip	yes
UN_RAP1GAP2_LS0007	chr17:2770445|2772483:+	RAP1GAP2	RAP1 GTPase activating protein 2	protein coding gene	no	.	4.809	0.576	0.000	0.031(301)	0.057(40)	0(0)	non tumor-specific	nAS	no
CORO1C_LS027	chr12:108701323|108731429:-	CORO1C	coronin 1C	protein coding gene	no	ENST00000261401.7;ENST00000549384.5;ENST00000550542.5;ENST00000551059.1	19.245	14.442	26.958	0.973(9323)	0.989(694)	0.978(16998)	non tumor-specific	exon_skip	yes
LINC02367_LS003	chr12:9394657|9395719:+	LINC02367	long intergenic non-protein coding RNA 2367	lncRNA gene	no	ENST00000567749.1	1.360	0.024	0.826	0.03(284)	0.006(4)	0.217(3775)	non tumor-specific	nAS	yes
NCF4_LS007	chr22:36871709|36872327:+	NCF4	neutrophil cytosolic factor 4	protein coding gene	no	ENST00000447071.5;ENST00000248899.10;ENST00000397147.6	38.484	15.796	15.961	0.973(9321)	0.98(688)	0.948(16472)	non tumor-specific	alt_3prime	yes
UN_RPS13_LS0004	chr11:17075191|17075454:-	RPS13	ribosomal protein S13	protein coding gene	no	.	392.890	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
AHNAK2_LS106	chr14:104954799|104954957:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	ENST00000333244.5;ENST00000555544.1	3.270	2.055	2.512	0.671(6433)	0.674(473)	0.607(10557)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PRPF3_LS0022	chr1:150342198|150343309:+	PRPF3	pre-mRNA processing factor 3	protein coding gene	no	.	6.575	1.363	0.000	0.004(43)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
TINAG_LS011	chr6:54351397|54354513:+	TINAG	tubulointerstitial nephritis antigen	protein coding gene	no	ENST00000259782.8	33.127	43.278	1.103	0.175(1672)	0.244(171)	0.132(2299)	non tumor-specific	nAS	yes
UN_TRAF6_LS0018	chr11:36500613|36501220:-	TRAF6	TNF receptor associated factor 6	protein coding gene	yes	.	0.659	0.140	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	nAS	no
SOX2-OT_LS064	chr3:181722298|181736375:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000629552.2;ENST00000628810.2	0.078	0.000	1.198	0.003(25)	0(0)	0(4)	non tumor-specific	nAS	yes
UN_PLXNB2_LS0051	chr22:50275389|50275759:+	PLXNB2	plexin B2	protein coding gene	no	.	11.445	1.316	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_WDR34_UP_LS0007	chr9:128663576|128684366:-	WDR34	dynein 2 intermediate chain 2	protein coding gene	no	.	3.240	0.805	0.000	0.055(523)	0.103(72)	0(0)	non tumor-specific	nAS	no
FHAD1_LS032	chr1:15345523|15349042:+	FHAD1	forkhead associated phosphopeptide binding domain 1	protein coding gene	no	ENST00000358897.8;ENST00000375998.8;ENST00000471347.5	4.059	2.122	0.905	0.075(714)	0.101(71)	0.211(3666)	non tumor-specific	exon_skip	yes
PPWD1_LS006	chr5:65563839|65567513:+	PPWD1	peptidylprolyl isomerase domain and WD repeat containing 1	protein coding gene	no	ENST00000535264.5;ENST00000510930.5	0.136	0.529	0.791	0.232(2226)	0.246(173)	0.334(5813)	non tumor-specific	exon_skip	yes
UN_ATN1_LS0129	chr12:6936337|6936519:-	ATN1	atrophin 1	protein coding gene	no	.	6.951	0.446	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PKIG_LS0023	chr20:44564340|44582585:+	PKIG	cAMP-dependent protein kinase inhibitor gamma	protein coding gene	no	.	5.316	15.068	0.000	0.063(608)	0.127(89)	0(0)	non tumor-specific	exon_skip	no
UN_NLRP8_LS0003	chr19:55979564|55981059:+	NLRP8	NLR family pyrin domain containing 8	protein coding gene	no	.	11.501	0.719	0.000	0.021(202)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AL080284.1_UP_LS0002	chr6:91559027|91559535:-	AL080284.1	-	lncRNA gene	no	.	3.472	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CHRNG_LS006	chr2:232541529|232542423:+	CHRNG	cholinergic receptor nicotinic gamma subunit	protein coding gene	no	ENST00000389494.7	5.629	1.973	7.800	0.022(209)	0.017(12)	0.067(1167)	non tumor-specific	exon_skip	yes
UN_KDM5C_LS0113	chrX:53215971|53216074:-	KDM5C	lysine demethylase 5C	protein coding gene	no	.	15.552	1.794	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_MT-ND4_LS0082	chrM:11218|11295:-	MT-ND4	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4	protein coding gene	no	.	216.007	66.096	0.000	0.007(66)	0.007(5)	0(0)	non tumor-specific	nAS	no
ACTN1_LS014	chr14:68880108|68880810:-	ACTN1	actinin alpha 1	protein coding gene	no	ENST00000193403.10;ENST00000556083.1;ENST00000394419.8;ENST00000438964.6;ENST00000376839.7;ENST00000555075.5;ENST00000538545.6;ENST00000544964.6;ENST00000553290.1;ENST00000556432.1	223.174	163.135	192.925	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_SEC61G_UP_LS0003	chr7:54811996|54812105:-	SEC61G	SEC61 translocon subunit gamma	protein coding gene	no	.	1.247	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	nAS	no
GTF3C5_LS001	chr9:133030910|133042087:+	GTF3C5	general transcription factor IIIC subunit 5	protein coding gene	no	ENST00000440319.5	1.280	0.266	1.170	0.751(7199)	0.698(490)	0.667(11593)	non tumor-specific	alt_5prime;exon_skip	yes
MUC4_LS180	chr3:195781177|195781898:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	2.627	2.235	0.000	0.001(6)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_RTEL1-TNFRSF6B_LS0003	chr20:63659504|63661301:+	RTEL1-TNFRSF6B	RTEL1-TNFRSF6B readthrough (NMD candidate)	protein coding gene	no	.	4.050	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EIF2B3_LS0001	chr1:44857804|44874678:-	EIF2B3	eukaryotic translation initiation factor 2B subunit gamma	protein coding gene	no	.	9.866	3.191	0.000	0.062(596)	0.026(18)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
GPN1_LS014	chr2:27639031|27640043:+	GPN1	GPN-loop GTPase 1	protein coding gene	no	ENST00000515877.5;ENST00000503738.5;ENST00000458167.6;ENST00000424214.5;ENST00000407583.7;ENST00000616939.4;ENST00000264718.7;ENST00000610189.1;ENST00000461249.1	68.304	33.264	32.413	0.996(9542)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
SLC6A18_LS006	chr5:1239562|1240531:+	SLC6A18	solute carrier family 6 member 18	protein coding gene	no	ENST00000324642.3	19.524	3.693	1.086	0.044(419)	0.13(91)	0.007(127)	non tumor-specific	exon_skip	yes
TOM1L2_LS007	chr17:17850952|17857769:-	TOM1L2	target of myb1 like 2 membrane trafficking protein	protein coding gene	yes	ENST00000535933.5;ENST00000542206.5	2.293	1.966	6.931	0.389(3731)	0.726(510)	0.813(14128)	non tumor-specific	alt_5prime;exon_skip	yes
RPL27A_LS002	chr11:8683265|8683863:+	RPL27A	ribosomal protein L27a	protein coding gene	no	ENST00000534599.5	15.419	14.699	3.540	0.93(8915)	0.923(648)	0.918(15955)	non tumor-specific	alt_3prime;exon_skip	yes
CREB5_LS020	chr7:28724332|28726681:+	CREB5	cAMP responsive element binding protein 5	protein coding gene	no	ENST00000468813.1	0.064	0.022	0.687	0.015(148)	0.009(6)	0.014(248)	non tumor-specific	intron_retention	yes
UN_ZNF33A_LS0074	chr10:38063984|38064362:-	ZNF33A	zinc finger protein 33A	protein coding gene	no	.	2.341	0.316	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
CCDC144NL-AS1_LS015	chr17:20938660|20955966:+	CCDC144NL-AS1	CCDC144NL antisense RNA 1	lncRNA gene	no	ENST00000433763.6	0.327	0.000	0.718	0.009(85)	0.001(1)	0.001(14)	non tumor-specific	nAS	yes
SECISBP2L_LS011	chr15:49017015|49017548:-	SECISBP2L	SECIS binding protein 2 like	protein coding gene	no	ENST00000559471.5;ENST00000261847.7;ENST00000380927.6;ENST00000557940.1;ENST00000559424.1;ENST00000558461.1	15.866	20.128	12.403	0.903(8650)	0.97(681)	0.957(16642)	non tumor-specific	exon_skip;intron_retention	yes
UN_B4GALNT3_LS0054	chr12:553099|553194:+	B4GALNT3	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein coding gene	no	.	1.500	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_CSNK1G3_LS0009	chr5:123545841|123550228:+	CSNK1G3	casein kinase 1 gamma 3	protein coding gene	no	.	4.919	0.392	0.000	0.013(120)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
ATXN2_LS012	chr12:111455119|111456029:-	ATXN2	ataxin 2	protein coding gene	no	ENST00000647445.1;ENST00000542287.6	0.573	0.438	1.595	0.094(905)	0.117(82)	0.727(12629)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NHSL2_LS002	chrX:72027699|72132079:+	NHSL2	NHS like 2	protein coding gene	no	ENST00000631833.1	1.750	0.528	0.705	0.007(70)	0.023(16)	0.106(1836)	non tumor-specific	exon_skip	yes
RPL18_LS009	chr19:48616824|48617316:-	RPL18	ribosomal protein L18	protein coding gene	no	ENST00000549920.5;ENST00000547897.5;ENST00000084795.9;ENST00000550645.5;ENST00000552588.5;ENST00000546623.5;ENST00000549370.5;ENST00000549273.5;ENST00000550973.5;ENST00000552705.5;ENST00000552851.1	4312.267	1994.557	1745.868	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PDRG1_LS0010	chr20:31948879|31950312:-	PDRG1	p53 and DNA damage regulated 1	protein coding gene	no	.	7.639	1.192	0.000	0.025(240)	0.026(18)	0(0)	non tumor-specific	nAS	no
ETAA1_LS011	chr2:67402974|67405236:+	ETAA1	ETAA1 activator of ATR kinase	protein coding gene	no	ENST00000644028.1;ENST00000644028.1	4.430	1.239	0.000	0.085(811)	0.024(17)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RAC1_LS007	chr7:6391580|6391924:+	RAC1	ribonuclease A family member 1, pancreatic	protein coding gene	yes	ENST00000497741.5	0.043	0.067	0.625	0.095(908)	0.105(74)	0.039(676)	non tumor-specific	nAS	yes
AGBL1_LS013	chr15:86266457|86266990:+	AGBL1	ATP/GTP binding protein like 1	protein coding gene	no	ENST00000441037.7;ENST00000635782.1;ENST00000568785.5;ENST00000567715.1	1.310	4.477	1.205	0.008(81)	0.068(48)	0.091(1579)	non tumor-specific	nAS	yes
DDX3X_LS021	chrX:41341616|41342495:+	DDX3X	DEAD-box helicase 3 X-linked	protein coding gene	yes	ENST00000644876.1;ENST00000629496.3;ENST00000629785.2;ENST00000630255.2;ENST00000625837.2;ENST00000630858.2;ENST00000630370.2;ENST00000626301.2;ENST00000478993.5;ENST00000457138.7;ENST00000631641.2;ENST00000646822.1;ENST00000441189.4;ENST00000645589.1;ENST00000644513.1;ENST00000644958.1;ENST00000644109.1;ENST00000642597.1;ENST00000646122.1;ENST00000645080.1;ENST00000644307.1;ENST00000646940.1;ENST00000642793.1;ENST00000645338.1;ENST00000644074.1;ENST00000399959.7;ENST00000643963.1;ENST00000646223.1;ENST00000646319.1;ENST00000642624.1;ENST00000542215.5;ENST00000644073.1;ENST00000615313.5;ENST00000644677.1;ENST00000642322.1;ENST00000622198.5;ENST00000645120.1;ENST00000646107.1;ENST00000646627.1;ENST00000645253.1;ENST00000645380.1;ENST00000642424.1;ENST00000646679.1;ENST00000644260.1	87.134	79.071	93.291	0.983(9421)	0.991(696)	0.979(17019)	non tumor-specific	intron_retention	yes
UN_FKBP8_LS0177	chr19:18539728|18541683:+	FKBP8	FKBP prolyl isomerase 8	protein coding gene	no	.	2.366	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC110023.1_LS002	chr15:93592733|93593300:+	AC110023.1	-	lncRNA gene	no	ENST00000554318.2	0.521	0.117	0.815	0.002(20)	0.003(2)	0.049(847)	non tumor-specific	nAS	yes
UN_CHIT1_LS0003	chr1:203213045|203219216:-	CHIT1	chitinase 1	protein coding gene	no	.	3.873	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
TIMELESS_LS019	chr12:56428405|56428883:-	TIMELESS	timeless circadian regulator	protein coding gene	no	.;.	2.431	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
MED9_LS001	chr17:17477265|17485300:+	MED9	mediator complex subunit 9	protein coding gene	no	ENST00000580462.1;ENST00000581315.1	0.365	0.189	0.764	0.252(2410)	0.234(164)	0.275(4780)	non tumor-specific	exon_skip	yes
MYH6_LS010	chr14:23388338|23388859:-	MYH6	myosin heavy chain 6	protein coding gene	no	ENST00000405093.7;ENST00000356287.3	5.224	0.412	1.817	0.04(381)	0.054(38)	0.62(10778)	non tumor-specific	nAS	yes
UN_IDUA_LS0009	chr4:1000989|1001472:+	IDUA	alpha-L-iduronidase	protein coding gene	no	.	6.375	0.193	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
NVL_LS023	chr1:224300663|224303723:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000469968.5;ENST00000391875.6;ENST00000281701.10;ENST00000469075.5;ENST00000467882.5	21.001	8.842	10.204	0.958(9178)	0.973(683)	0.974(16928)	non tumor-specific	exon_skip	yes
ARMC10_LS030	chr7:103092653|103098299:+	ARMC10	armadillo repeat containing 10	protein coding gene	yes	ENST00000425331.5;ENST00000431642.1	13.283	7.526	1.570	0.876(8389)	0.897(630)	0.721(12537)	non tumor-specific	exon_skip	yes
UN_FTCD_LS0030	chr21:46145578|46145878:-	FTCD	formimidoyltransferase cyclodeaminase	protein coding gene	no	.	18.202	116.580	0.000	0.014(138)	0.066(46)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_C12orf75_LS0043	chr12:105383170|105395632:+	C12orf75	chromosome 12 open reading frame 75	protein coding gene	no	.	1.995	0.000	0.000	0.007(71)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_USH1C_LS0029	chr11:17521408|17522784:-	USH1C	USH1 protein network component harmonin	protein coding gene	no	.	55.704	0.332	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SF3A2_LS0008	chr19:2241646|2243382:+	SF3A2	splicing factor 3a subunit 2	protein coding gene	no	.	1.278	0.233	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DPH7_LS021	chr9:137576167|137576309:-	DPH7	diphthamide biosynthesis 7	protein coding gene	no	ENST00000475100.5;ENST00000472113.5;ENST00000470855.5;ENST00000481839.5;ENST00000460572.1	4.329	1.592	15.395	0.912(8739)	0.84(590)	0.976(16963)	non tumor-specific	exon_skip;intron_retention	yes
MGAM_LS028	chr7:142047873|142050235:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000549489.6;ENST00000620571.1;ENST00000475668.6	5.777	5.538	1.237	0.087(834)	0.226(159)	0.26(4528)	non tumor-specific	nAS	yes
UN_TRAF3_UP_LS0004	chr14:102743710|102752934:+	TRAF3	TNF receptor associated factor 3	protein coding gene	no	.	2.145	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEP104_LS0037	chr1:3846859|3847475:-	CEP104	centrosomal protein 104	protein coding gene	no	.	3.074	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CCNQ_LS017	chrX:153596187|153598966:-	CCNQ	cyclin Q	protein coding gene	no	ENST00000614851.4;ENST00000620088.4;ENST00000621629.4	2.897	2.795	6.544	0.919(8808)	0.944(663)	0.97(16867)	non tumor-specific	alt_5prime	yes
ELAVL1_LS010	chr19:7973878|7981083:-	ELAVL1	ELAV like RNA binding protein 1	protein coding gene	yes	ENST00000407627.6;ENST00000596154.5;ENST00000596459.5;ENST00000593807.1;ENST00000407627.6;ENST00000596154.5;ENST00000596459.5;ENST00000593807.1	151.516	74.165	49.534	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BHLHE40-AS1_LS0029	chr3:4978996|4979461:+	BHLHE40-AS1	BHLHE40 antisense RNA 1	lncRNA gene	no	.	1.635	0.788	0.000	0.021(205)	0.043(30)	0(0)	non tumor-specific	nAS	no
SLC4A8_LS026	chr12:51466512|51467354:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000550211.1	0.307	0.005	0.688	0.008(76)	0.001(1)	0.012(207)	non tumor-specific	exon_skip	yes
UN_IRGM_LS0010	chr5:150881456|150882099:-	IRGM	immunity related GTPase M	protein coding gene	no	.	2.920	0.340	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CLEC16A_LS0003	chr16:10973061|10979329:+	CLEC16A	C-type lectin domain containing 16A	protein coding gene	no	.	4.897	0.204	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_LIPH_LS0031	chr3:185524160|185527463:-	LIPH	lipase H	protein coding gene	no	.	2.965	0.483	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
VPS13A_LS052	chr9:77337537|77339516:+	VPS13A	vacuolar protein sorting 13 homolog A	protein coding gene	no	ENST00000376634.8;ENST00000376636.7;ENST00000360280.7;ENST00000357409.9;ENST00000645632.1;ENST00000643348.1;ENST00000644843.1	8.104	5.592	8.911	0.657(6294)	0.839(589)	0.922(16024)	non tumor-specific	exon_skip	yes
UN_AC129492.1_UP_LS0003	chr17:8063060|8064914:+	AC129492.1	-	lncRNA gene	no	.	5.691	0.993	0.000	0.006(55)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0529	chr21:8401266|8445322:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	227.762	24.500	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	nAS	no
LYZL6_LS003	chr17:35936833|35937758:-	LYZL6	lysozyme like 6	protein coding gene	no	ENST00000618542.4;ENST00000615905.4	7.587	0.000	0.732	0.002(18)	0(0)	0.021(362)	non tumor-specific	nAS	yes
RRM1_LS019	chr11:4119928|4121579:+	RRM1	ribonucleotide reductase catalytic subunit M1	protein coding gene	no	ENST00000528442.5	9.668	3.046	0.732	0.194(1863)	0.185(130)	0.274(4760)	non tumor-specific	alt_3prime	yes
RFX3-AS1_LS001	chr9:3526777|3546778:+	RFX3-AS1	RFX3 antisense RNA 1	lncRNA gene	no	ENST00000423112.2	1.088	0.271	0.839	0.015(144)	0.014(10)	0.377(6555)	non tumor-specific	nAS	yes
UN_PSMC2_UP_LS0010	chr7:103244694|103297458:+	PSMC2	proteasome 26S subunit, ATPase 2	protein coding gene	no	.	3.153	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF718_LS0026	chr4:131505|134170:+	ZNF718	zinc finger protein 718	protein coding gene	no	.	1.688	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EOGT_LS0015	chr3:68991872|68992198:-	EOGT	EGF domain specific O-linked N-acetylglucosamine transferase	protein coding gene	no	.	1.595	0.107	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TDRKH_LS022	chr1:151781587|151782899:-	TDRKH	tudor and KH domain containing	protein coding gene	no	ENST00000525790.5;ENST00000368827.10;ENST00000440583.6;ENST00000368825.7;ENST00000368824.7;ENST00000368823.5;ENST00000368822.5;ENST00000458431.6;ENST00000526413.5;ENST00000484421.5;ENST00000486986.6;ENST00000526378.5;ENST00000494725.6	8.286	4.601	4.537	0.939(8992)	0.964(677)	0.94(16341)	non tumor-specific	exon_skip	yes
TBC1D1_LS027	chr4:38054338|38089932:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	ENST00000508802.5;ENST00000261439.8;ENST00000615497.4;ENST00000446803.6;ENST00000510573.6;ENST00000443855.5	61.415	47.683	30.012	0.97(9297)	0.993(697)	0.979(17019)	non tumor-specific	exon_skip	yes
PACS2_LS038	chr14:105391766|105392761:+	PACS2	phosphofurin acidic cluster sorting protein 2	protein coding gene	no	ENST00000551801.1	0.094	0.066	10.785	0.953(9127)	0.932(654)	0.974(16927)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GRID2IP_LS003	chr7:6501899|6501989:-	GRID2IP	Grid2 interacting protein	protein coding gene	no	ENST00000452113.5;ENST00000435185.5;ENST00000457091.2	4.057	1.732	2.199	0.398(3809)	0.416(292)	0.621(10794)	non tumor-specific	nAS	yes
PLA2R1_LS030	chr2:160005821|160013263:-	PLA2R1	phospholipase A2 receptor 1	protein coding gene	yes	ENST00000283243.12;ENST00000392771.1	6.662	17.163	7.718	0.602(5765)	0.821(576)	0.844(14671)	non tumor-specific	exon_skip	yes
UN_AC103808.6_UP_LS0003	chr18:76225040|76225711:-	AC103808.6	-	lncRNA gene	no	.	1.356	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PLIN3_LS014	chr19:4861411|4866880:-	PLIN3	perilipin 3	protein coding gene	no	ENST00000589494.1	0.021	0.016	0.617	0.08(766)	0.097(68)	0.058(1005)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_IGLC3_UP_LS0058	chr22:22768502|22906342:+	IGLC3	immunoglobulin lambda constant 3 (Kern-Oz+ marker)	no	no	.	631.613	92.750	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
CD276_LS009	chr15:73685083|73699586:+	CD276	CD276 molecule	protein coding gene	no	ENST00000561260.5	0.007	0.073	0.630	0.284(2723)	0.254(178)	0.036(622)	non tumor-specific	alt_3prime	yes
CHTOP_LS014	chr1:153638448|153643227:+	CHTOP	chromatin target of PRMT1	protein coding gene	no	.;.	1.216	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
NPL_LS014	chr1:182792286|182803698:+	NPL	N-acetylneuraminate pyruvate lyase	protein coding gene	no	ENST00000471010.1	0.395	0.264	0.845	0.62(5936)	0.615(432)	0.261(4536)	non tumor-specific	exon_skip	yes
YBX3_LS035	chr12:10710788|10713211:-	YBX3	Y-box binding protein 3	protein coding gene	no	ENST00000544622.4;ENST00000544622.4	0.353	0.170	16.251	0.827(7920)	0.88(618)	0.884(15357)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CLUH_LS037	chr17:2704564|2712353:-	CLUH	clustered mitochondria homolog	protein coding gene	no	ENST00000571566.1	0.159	0.082	0.713	0.134(1282)	0.151(106)	0.066(1151)	non tumor-specific	nAS	yes
LSMEM1_LS001	chr7:112480982|112483414:+	LSMEM1	leucine rich single-pass membrane protein 1	protein coding gene	no	ENST00000455302.5	0.142	0.011	0.658	0.002(17)	0.006(4)	0.012(209)	non tumor-specific	nAS	yes
UN_TRBV12-4_UP_LS0001	chr7:142558353|142560443:+	TRBV12-4	T cell receptor beta variable 12-4	no	no	.	1.041	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
DYSF_LS028	chr2:71561944|71564058:+	DYSF	dysferlin	protein coding gene	no	ENST00000409762.5;ENST00000409582.7;ENST00000429174.6;ENST00000413539.6;ENST00000258104.7;ENST00000409651.5;ENST00000394120.6;ENST00000409744.5;ENST00000409366.5;ENST00000410020.7;ENST00000410041.1	5.659	4.524	6.953	0.776(7434)	0.923(648)	0.875(15212)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0222	chr14:104944245|104945236:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	2.740	1.604	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_OBSCN_LS0024	chr1:228269205|228273760:-	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	1.333	0.283	0.000	0.017(166)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_GPAM_UP_LS0003	chr10:112216917|112217794:-	GPAM	glycerol-3-phosphate acyltransferase, mitochondrial	protein coding gene	no	.	13.569	1.381	0.000	0.002(19)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_LINC00665_LS0010	chr19:36316348|36317635:-	LINC00665	long intergenic non-protein coding RNA 665	lncRNA gene	no	.	4.302	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CEP112_LS038	chr17:66070001|66129746:-	CEP112	centrosomal protein 112	protein coding gene	no	ENST00000537949.5	0.076	0.145	1.261	0.359(3437)	0.583(409)	0.575(9991)	non tumor-specific	exon_skip	yes
IKBKG_LS001	chrX:154541391|154542282:+	IKBKG	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein coding gene	no	ENST00000422680.5	1.202	0.392	0.776	0.082(787)	0.05(35)	0.034(598)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC4A8_LS001	chr12:51391488|51403073:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000615370.1	0.143	0.012	0.685	0.029(278)	0.024(17)	0.005(79)	non tumor-specific	nAS	yes
UN_ARHGEF11_LS0049	chr1:156956564|156958742:-	ARHGEF11	Rho guanine nucleotide exchange factor 11	protein coding gene	no	.	4.161	1.000	0.000	0.009(87)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
OPRM1_LS008	chr6:154087804|154089826:+	OPRM1	opioid receptor mu 1	protein coding gene	no	ENST00000522236.1	0.166	0.000	0.886	0.003(32)	0(0)	0.007(130)	non tumor-specific	alt_5prime	yes
AL355512.1_LS001	chr10:110429010|110435124:-	AL355512.1	-	lncRNA gene	no	ENST00000609514.1	2.748	0.402	0.893	0.075(717)	0.051(36)	0.158(2755)	non tumor-specific	nAS	yes
ELMO2_LS017	chr20:46386275|46387338:-	ELMO2	engulfment and cell motility 2	protein coding gene	no	ENST00000290246.10;ENST00000372176.5;ENST00000396391.5;ENST00000352077.6;ENST00000450812.5;ENST00000469801.5;ENST00000460474.5;ENST00000497412.5	16.549	11.506	21.192	0.946(9067)	0.976(685)	0.978(17005)	non tumor-specific	exon_skip	yes
CENPT_LS041	chr16:67835295|67835538:-	CENPT	centromere protein T	protein coding gene	no	ENST00000569094.5;ENST00000565385.5;ENST00000568765.5	0.188	0.213	1.253	0.1(954)	0.066(46)	0.559(9723)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00470_LS0011	chr18:1278633|1368485:-	LINC00470	long intergenic non-protein coding RNA 470	lncRNA gene	no	.	4.885	0.173	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CD74_LS0333	chr5:150407198|150407244:+	CD74	CD74 molecule	protein coding gene	no	.	11.443	5.115	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
AGMO_LS009	chr7:15390905|15394113:-	AGMO	alkylglycerol monooxygenase	protein coding gene	no	ENST00000342526.7	12.921	14.696	1.752	0.34(3260)	0.467(328)	0.578(10042)	non tumor-specific	exon_skip	yes
PPIL6_LS005	chr6:109400170|109419187:-	PPIL6	peptidylprolyl isomerase like 6	protein coding gene	no	ENST00000521072.6;ENST00000424445.6;ENST00000417394.6;ENST00000518648.1	5.458	5.174	2.929	0.714(6837)	0.836(587)	0.846(14710)	non tumor-specific	exon_skip	yes
TEX41_LS025	chr2:144768280|145181010:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000594626.5	0.124	0.000	0.663	0.001(11)	0(0)	0(1)	non tumor-specific	nAS	yes
PIAS3_LS006	chr1:145853664|145853813:-	PIAS3	protein inhibitor of activated STAT 3	protein coding gene	no	ENST00000475261.1;ENST00000369298.5;ENST00000393045.6	42.275	21.458	49.332	0.984(9430)	0.981(689)	0.979(17018)	non tumor-specific	nAS	yes
UN_KIAA1755_LS0004	chr20:38216994|38217253:-	KIAA1755	KIAA1755	protein coding gene	no	.	2.032	0.878	0.000	0.037(352)	0.038(27)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
C6orf10_LS032	chr6:32367957|32368782:-	C6orf10	testis expressed basic protein 1	protein coding gene	no	ENST00000442822.6;ENST00000447241.6;ENST00000375015.8;ENST00000533191.5;ENST00000612031.4;ENST00000527965.5;ENST00000375007.8;ENST00000617061.4;ENST00000532023.5;ENST00000534588.1	2.262	0.452	0.674	0.009(88)	0.001(1)	0.011(188)	non tumor-specific	exon_skip	yes
TNIK_LS015	chr3:171101633|171107183:-	TNIK	TRAF2 and NCK interacting kinase	protein coding gene	no	ENST00000436636.6;ENST00000341852.10;ENST00000357327.9;ENST00000488470.5	3.018	2.558	2.956	0.545(5218)	0.689(484)	0.681(11842)	non tumor-specific	exon_skip	yes
GPR161_LS002	chr1:168087704|168090564:-	GPR161	G protein-coupled receptor 161	protein coding gene	no	ENST00000539777.5;ENST00000546300.5;ENST00000271357.9;ENST00000537209.5;ENST00000367838.5;ENST00000367836.5;ENST00000367835.1	14.614	4.912	7.663	0.749(7176)	0.752(528)	0.91(15819)	non tumor-specific	alt_3prime	yes
NEFH_LS003	chr22:29485847|29488849:+	NEFH	neurofilament heavy	protein coding gene	no	ENST00000310624.6	21.087	36.311	2.113	0.427(4091)	0.481(338)	0.616(10709)	non tumor-specific	nAS	yes
UN_PRKCSH_LS0012	chr19:11436232|11436389:+	PRKCSH	protein kinase C substrate 80K-H	protein coding gene	no	.	67.512	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RPSAP68_UP_LS0287	chr21:8399316|8443551:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	317.995	68.345	0.000	0.008(78)	0.006(4)	0(0)	non tumor-specific	nAS	no
SFI1_LS034	chr22:31602785|31604309:+	SFI1	SFI1 centrin binding protein	protein coding gene	no	ENST00000382162.7	0.131	0.153	1.873	0.312(2994)	0.205(144)	0.779(13549)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ARAP2_LS0007	chr4:36012831|36015900:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	1.265	0.314	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
AC097487.1_LS001	chr4:166389429|166509558:-	AC097487.1	-	lncRNA gene	no	ENST00000514134.1	0.001	0.000	0.692	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_FDPS_LS0035	chr1:155318008|155318265:-	FDPS	farnesyl diphosphate synthase	protein coding gene	yes	.	4.284	2.520	0.000	0.024(227)	0.024(17)	0(0)	non tumor-specific	nAS	no
MTMR11_LS034	chr1:149936229|149936711:-	MTMR11	myotubularin related protein 11	protein coding gene	no	ENST00000466496.5;ENST00000466496.5	0.108	0.091	0.767	0.122(1168)	0.103(72)	0.221(3833)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_PRICKLE3_LS0017	chrX:49179806|49183657:-	PRICKLE3	prickle planar cell polarity protein 3	protein coding gene	no	.	2.087	0.236	0.000	0.019(178)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_KRT80_LS0001	chr12:52169159|52170002:+	KRT80	keratin 80	protein coding gene	no	.	3.941	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC243960.5_UP_LS0024	chr19:41686108|41715013:-	AC243960.5	-	pseudogene	no	.	0.749	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SERHL2_LS007	chr22:42555087|42555232:+	SERHL2	serine hydrolase like 2	protein coding gene	no	ENST00000447870.6;ENST00000477564.5;ENST00000340239.8;ENST00000534080.5;ENST00000416156.6;ENST00000327678.9;ENST00000527167.5;ENST00000472589.1	2.930	2.745	1.634	0.776(7438)	0.873(613)	0.674(11716)	non tumor-specific	exon_skip	yes
UN_PAX8_LS0009	chr2:113217544|113217678:+	PAX8	paired box 8	protein coding gene	yes	.	2.814	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
RNF126_LS009	chr19:651784|652233:-	RNF126	ring finger protein 126	protein coding gene	no	ENST00000590885.6	0.070	0.099	1.298	0.747(7153)	0.791(555)	0.732(12721)	non tumor-specific	alt_3prime	yes
MCMDC2_LS007	chr8:66874456|66877349:+	MCMDC2	minichromosome maintenance domain containing 2	protein coding gene	no	.;.	1.122	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CLIC4_LS0033	chr1:24844128|24844184:-	CLIC4	chloride intracellular channel 4	protein coding gene	no	.	10.100	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LNX1_LS0018	chr4:53574088|53579255:-	LNX1	ligand of numb-protein X 1	protein coding gene	no	.	1.051	0.577	0.000	0.01(94)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
SATB2_LS005	chr2:199349173|199368605:-	SATB2	SATB homeobox 2	protein coding gene	no	ENST00000417098.5;ENST00000443023.5;ENST00000260926.9;ENST00000457245.5;ENST00000483346.2	5.455	7.562	2.716	0.811(7766)	0.819(575)	0.816(14187)	non tumor-specific	exon_skip	yes
TMPO_LS014	chr12:98544349|98544442:+	TMPO	thymopoietin	protein coding gene	no	ENST00000556029.5;ENST00000548223.5	49.293	19.232	9.962	0.976(9352)	0.993(697)	0.942(16373)	non tumor-specific	exon_skip;intron_retention	yes
AC010511.1_LS001	chr19:28065365|28122234:+	AC010511.1	-	lncRNA gene	no	ENST00000586671.5	2.004	0.000	0.637	0.001(6)	0(0)	0.001(23)	non tumor-specific	nAS	yes
UN_PAX8_LS0080	chr2:113220174|113226144:-	PAX8	paired box 8	protein coding gene	yes	.	7.298	4.145	0.000	0.002(21)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AC025154.2_UP_LS0003	chr12:49965306|49965683:-	AC025154.2	-	lncRNA gene	no	.	6.233	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AC063977.6_LS003	chr19:51156473|51165221:-	AC063977.6	-	lncRNA gene	no	ENST00000600074.1	1.091	0.000	0.725	0.003(26)	0(0)	0.007(114)	non tumor-specific	nAS	yes
UN_LINC00205_LS0012	chr21:45288866|45288976:+	LINC00205	long intergenic non-protein coding RNA 205	no	no	.	0.847	0.172	0.000	0.027(254)	0.02(14)	0(0)	non tumor-specific	nAS	no
FHOD3_LS012	chr18:36625749|36658075:+	FHOD3	formin homology 2 domain containing 3	protein coding gene	no	ENST00000257209.8;ENST00000589114.5;ENST00000359247.8;ENST00000591635.5	8.853	9.709	3.137	0.61(5840)	0.678(476)	0.78(13557)	non tumor-specific	exon_skip	yes
UN_PRG4_LS0085	chr1:186307349|186307494:-	PRG4	proteoglycan 4	protein coding gene	no	.	8.774	4.450	0.000	0.002(19)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AHCTF1_UP_LS0002	chr1:246939805|246945712:-	AHCTF1	AT-hook containing transcription factor 1	protein coding gene	no	.	1.060	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
POLE_LS021	chr12:132642729|132642820:-	POLE	DNA polymerase epsilon, catalytic subunit	protein coding gene	no	ENST00000320574.9;ENST00000537064.5;ENST00000535270.5	24.979	7.414	15.905	0.875(8384)	0.895(628)	0.973(16909)	non tumor-specific	nAS	yes
UN_POLR2A_LS0373	chr17:7513775|7513778:+	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	111.492	17.436	0.000	0.019(181)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC006145.1_LS002	chr7:82020934|82021122:+	AC006145.1	-	lncRNA gene	no	ENST00000439234.5	0.005	0.000	0.398	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_AC084149.1_UP_LS0033	chr2:77988778|77998078:-	AC084149.1	-	lncRNA gene	no	.	3.173	0.172	0.000	0.088(839)	0.001(1)	0(0)	non tumor-specific	nAS	no
SRSF3_LS012	chr6:36601190|36601708:+	SRSF3	serine and arginine rich splicing factor 3	protein coding gene	yes	ENST00000373715.10;ENST00000477442.6;ENST00000620941.1;ENST00000620389.1	567.520	309.573	328.881	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
COL6A2_LS012	chr21:46116814|46117400:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	ENST00000300527.8;ENST00000310645.9;ENST00000409416.5;ENST00000397763.5;ENST00000485591.1	502.121	365.838	416.263	0.991(9492)	0.997(700)	0.979(17009)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
DST_LS019	chr6:56470282|56471106:-	DST	dystonin	protein coding gene	no	ENST00000244364.10;ENST00000421834.6;ENST00000312431.10;ENST00000370788.6;ENST00000361203.7	76.151	71.577	147.521	0.937(8982)	0.993(697)	0.967(16800)	non tumor-specific	nAS	yes
UN_PSMG4_LS0016	chr6:3246949|3247319:-	PSMG4	proteasome assembly chaperone 4	protein coding gene	no	.	1.916	1.446	0.000	0.014(131)	0.003(2)	0(0)	non tumor-specific	nAS	no
RUBCNL_LS015	chr13:46368815|46377890:-	RUBCNL	rubicon like autophagy enhancer	protein coding gene	no	ENST00000378781.7;ENST00000409879.6	0.088	0.116	0.813	0.071(678)	0.067(47)	0.097(1694)	non tumor-specific	exon_skip	yes
LINC01482_LS001	chr17:68591878|68598032:+	LINC01482	long intergenic non-protein coding RNA 1482	lncRNA gene	no	ENST00000587999.1	1.014	0.000	0.596	0.003(24)	0(0)	0.013(224)	non tumor-specific	nAS	yes
UN_AC244250.3_UP_LS0035	chr22:22735084|22893777:-	AC244250.3	-	pseudogene	no	.	19.294	0.463	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC104454.2_LS0003	chr1:84058569|84064692:+	AC104454.2	-	lncRNA gene	no	.	3.734	0.395	0.000	0.031(301)	0.001(1)	0(0)	non tumor-specific	nAS	no
BORCS7-ASMT_LS010	chr10:102874661|102876954:+	BORCS7-ASMT	BORCS7-ASMT readthrough (NMD candidate)	protein coding gene	no	ENST00000299353.6	35.475	78.864	14.171	0.858(8216)	0.989(694)	0.968(16825)	non tumor-specific	nAS	yes
UN_GAB3_LS0002	chrX:154675745|154678184:-	GAB3	GRB2 associated binding protein 3	protein coding gene	no	.	1.325	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_SMAD4_LS0004	chr18:51058244|51058344:+	SMAD4	SMAD family member 4	protein coding gene	yes	.	4.807	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
IGHV3-7_LS001	chr14:106062455|106062559:-	IGHV3-7	immunoglobulin heavy variable 3-7	no	no	ENST00000390598.2	29.024	43.054	4.374	0.834(7988)	0.929(652)	0.617(10728)	non tumor-specific	nAS	yes
UN_AC005307.1_LS0001	chr19:28419911|28420549:-	AC005307.1	-	lncRNA gene	no	.	2.417	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLEKHS1_LS0192	chr10:113781651|113781740:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	4.153	0.196	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_VSIG10L_LS0020	chr19:51339142|51339672:-	VSIG10L	V-set and immunoglobulin domain containing 10 like	protein coding gene	no	.	1.009	0.144	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	nAS	no
CLDN15_LS013	chr7:101232944|101234278:-	CLDN15	claudin 15	protein coding gene	no	.;.	4.432	0.654	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_KPNA6_LS0008	chr1:32126215|32154588:+	KPNA6	karyopherin subunit alpha 6	protein coding gene	no	.	2.233	0.274	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_GRIN1_LS0027	chr9:137164987|137165186:+	GRIN1	glutamate ionotropic receptor NMDA type subunit 1	protein coding gene	no	.	1.944	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_C4orf17_UP_LS0021	chr4:99352753|99355463:+	C4orf17	chromosome 4 open reading frame 17	protein coding gene	no	.	1.175	7.720	0.000	0.001(13)	0.011(8)	0(0)	non tumor-specific	nAS	no
CARHSP1_LS026	chr16:8860309|8868532:-	CARHSP1	calcium regulated heat stable protein 1	protein coding gene	no	.;.	0.752	0.443	0.000	0(3)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WDR4_LS0091	chr21:42848838|42848901:-	WDR4	WD repeat domain 4	protein coding gene	no	.	3.327	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PSMD12_LS0021	chr17:67366117|67366421:+	PSMD12	proteasome 26S subunit, non-ATPase 12	protein coding gene	no	.	1.250	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_USE1_LS0002	chr19:17216070|17216143:+	USE1	unconventional SNARE in the ER 1	protein coding gene	no	.	13.203	0.401	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
AC138969.1_LS030	chr16:16377196|16377421:+	AC138969.1	-	pseudogene	no	ENST00000532739.1	0.125	0.042	0.661	0.108(1034)	0.105(74)	0.007(121)	non tumor-specific	nAS	yes
TMEM263_LS012	chr12:106971643|106978350:+	TMEM263	transmembrane protein 263	protein coding gene	no	ENST00000548806.1	0.401	0.151	0.821	0.305(2918)	0.293(206)	0.275(4781)	non tumor-specific	exon_skip	yes
CCDC106_LS009	chr19:55648277|55649002:+	CCDC106	coiled-coil domain containing 106	protein coding gene	no	ENST00000308964.7;ENST00000308964.7	1.483	1.144	8.167	0.912(8742)	0.96(674)	0.966(16787)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SPRED3_LS012	chr19:38394786|38395480:+	SPRED3	sprouty related EVH1 domain containing 3	protein coding gene	no	ENST00000587013.5;ENST00000586301.5;ENST00000338502.8	1.449	0.466	1.321	0.348(3338)	0.151(106)	0.548(9534)	non tumor-specific	exon_skip	yes
CNTNAP3B_LS041	chr9:42104739|42129010:-	CNTNAP3B	contactin associated protein family member 3B	protein coding gene	no	ENST00000612828.4;ENST00000377561.6;ENST00000619138.4;ENST00000618777.4;ENST00000479351.5;ENST00000617422.4;ENST00000341990.8;ENST00000276974.7	1.655	0.967	2.637	0.322(3082)	0.601(422)	0.601(10451)	non tumor-specific	nAS	yes
UN_LINC02006_LS0009	chr3:153419379|153420701:+	LINC02006	long intergenic non-protein coding RNA 2006	lncRNA gene	no	.	2.515	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
DCLK1_LS020	chr13:36126156|36131114:-	DCLK1	doublecortin like kinase 1	protein coding gene	no	ENST00000360631.7;ENST00000255448.8;ENST00000379892.4	1.167	1.127	2.042	0.418(4003)	0.547(384)	0.674(11718)	non tumor-specific	nAS	yes
UN_ATP6V1G1P7_UP_LS0010	chr13:104014794|104015504:-	ATP6V1G1P7	ATPase H+ transporting V1 subunit G1 pseudogene 7	pseudogene	no	.	13.777	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TWIST1_LS003	chr7:19113140|19113877:-	TWIST1	twist family bHLH transcription factor 1	protein coding gene	yes	ENST00000354571.5	1.189	1.226	2.050	0.406(3892)	0.275(193)	0.54(9391)	non tumor-specific	intron_retention	yes
ADCY4_LS029	chr14:24328873|24329061:-	ADCY4	adenylate cyclase 4	protein coding gene	no	ENST00000545213.5	0.554	0.177	1.629	0.007(64)	0.024(17)	0.655(11382)	non tumor-specific	exon_skip;intron_retention	yes
UN_EIF4EBP1_LS0023	chr8:38060130|38060176:-	EIF4EBP1	eukaryotic translation initiation factor 4E binding protein 1	protein coding gene	no	.	4.475	0.471	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
PAFAH1B1_LS019	chr17:2670331|2672655:+	PAFAH1B1	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein coding gene	yes	ENST00000397195.9;ENST00000572915.6;ENST00000397193.7;ENST00000574468.1	98.010	83.033	55.149	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
ADAM28_LS017	chr8:24330115|24331150:+	ADAM28	ADAM metallopeptidase domain 28	protein coding gene	yes	ENST00000265769.8;ENST00000520448.5;ENST00000437154.6;ENST00000518516.5;ENST00000521110.1	8.310	5.778	2.180	0.601(5754)	0.668(469)	0.698(12126)	non tumor-specific	nAS	yes
EYA4_LS021	chr6:133483115|133506106:+	EYA4	EYA transcriptional coactivator and phosphatase 4	protein coding gene	yes	ENST00000452339.6;ENST00000430974.6;ENST00000367895.9;ENST00000355167.7;ENST00000355286.11;ENST00000431403.3;ENST00000531901.5;ENST00000525849.6;ENST00000531861.5;ENST00000532518.1	3.058	1.582	1.765	0.185(1775)	0.44(309)	0.524(9102)	non tumor-specific	nAS	yes
UN_KIAA1109_LS0002	chr4:122152848|122154025:+	KIAA1109	KIAA1109	protein coding gene	no	.	0.447	0.367	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC38A3_LS019	chr3:50218948|50219881:+	SLC38A3	solute carrier family 38 member 3	protein coding gene	no	ENST00000614032.4	40.799	71.911	5.316	0.336(3220)	0.546(383)	0.704(12236)	non tumor-specific	nAS	yes
UN_PCK2_LS0021	chr14:24102890|24103842:+	PCK2	phosphoenolpyruvate carboxykinase 2, mitochondrial	protein coding gene	no	.	16.137	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
APPL1_LS015	chr3:57252311|57253682:+	APPL1	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1	protein coding gene	no	ENST00000650354.1;ENST00000288266.7;ENST00000482800.5	25.710	20.324	17.840	0.955(9152)	0.984(691)	0.976(16960)	non tumor-specific	exon_skip	yes
UN_INPP5K_LS0010	chr17:1508226|1508335:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	.	5.587	1.209	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_MKNK2_LS0007	chr19:2037951|2038093:+	MKNK2	MAPK interacting serine/threonine kinase 2	protein coding gene	no	.	4.030	0.998	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_BCAP29_LS0025	chr7:107615281|107616261:+	BCAP29	B cell receptor associated protein 29	protein coding gene	no	.	1.073	0.025	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SMNDC1_LS0009	chr10:110303587|110304245:-	SMNDC1	survival motor neuron domain containing 1	protein coding gene	no	.	0.500	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
LINC00518_LS003	chr6:10430313|10434642:-	LINC00518	long intergenic non-protein coding RNA 518	lncRNA gene	no	ENST00000487130.1	0.379	0.019	0.672	0.082(784)	0.006(4)	0.016(280)	non tumor-specific	nAS	yes
R3HDM2_LS044	chr12:57395818|57430544:-	R3HDM2	R3H domain containing 2	protein coding gene	no	.;.	1.575	0.301	0.000	0.006(56)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PROM1_LS050	chr4:16076653|16080564:-	PROM1	prominin 1	protein coding gene	no	ENST00000504842.5	0.062	0.011	0.735	0.017(165)	0.026(18)	0.001(14)	non tumor-specific	nAS	yes
NRG4_LS031	chr15:76057019|76059655:-	NRG4	neuregulin 4	protein coding gene	no	ENST00000563910.5	0.191	0.212	0.889	0.005(51)	0.011(8)	0.029(506)	non tumor-specific	exon_skip;mutex_exons	yes
TRPV2_LS003	chr17:16419408|16420115:+	TRPV2	transient receptor potential cation channel subfamily V member 2	protein coding gene	no	ENST00000455666.1	0.065	0.065	0.631	0.548(5252)	0.557(391)	0.037(641)	non tumor-specific	nAS	yes
MS4A15_LS008	chr11:60763958|60767567:+	MS4A15	membrane spanning 4-domains A15	protein coding gene	no	ENST00000429322.6	1.099	0.000	2.447	0.008(72)	0.04(28)	0.027(477)	non tumor-specific	alt_3prime;exon_skip	yes
UN_VPS37D_UP_LS0005	chr7:73666609|73667409:+	VPS37D	VPS37D subunit of ESCRT-I	protein coding gene	no	.	1.208	1.347	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
HEXA_LS020	chr15:72350650|72351133:-	HEXA	hexosaminidase subunit alpha	protein coding gene	no	ENST00000268097.9;ENST00000567411.5;ENST00000566304.5;ENST00000567027.5;ENST00000568777.5;ENST00000567159.5;ENST00000563762.5;ENST00000566672.5;ENST00000569410.5;ENST00000569509.5	139.676	84.472	109.340	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SEC24B_LS0038	chr4:109532717|109533593:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	.	5.637	1.044	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_LINC01214_LS0015	chr3:150280120|150280367:+	LINC01214	long intergenic non-protein coding RNA 1214	lncRNA gene	no	.	4.561	0.504	0.000	0.024(229)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MUC5AC_LS0261	chr11:1188533|1188582:-	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	.	9.168	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012184.2_LS0321	chr16:70333112|70370366:+	AC012184.2	-	protein coding gene	no	.	29.603	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RERGL_LS0038	chr12:18196306|18203216:+	RERGL	RERG like	protein coding gene	no	.	10.994	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
TOM1_LS005	chr22:35311127|35317877:+	TOM1	target of myb1 membrane trafficking protein	protein coding gene	no	ENST00000443206.2	0.017	0.015	0.717	0.738(7069)	0.826(580)	0.058(1009)	non tumor-specific	alt_3prime	yes
MLH1_LS020	chr3:36997300|37000955:+	MLH1	mutL homolog 1	protein coding gene	yes	ENST00000458205.6	0.023	0.034	0.685	0.063(604)	0.075(53)	0.146(2544)	non tumor-specific	exon_skip	yes
UN_CASC3_LS0009	chr17:40163677|40163755:-	CASC3	CASC3 exon junction complex subunit	protein coding gene	no	.	2.516	0.252	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CLUHP2_UP_LS0002	chrY:18176697|18187141:+	CLUHP2	clustered mitochondria homolog pseudogene 2	pseudogene	no	.	13.301	1.570	0.000	0.008(74)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CAP1_LS0004	chr1:40048336|40048365:-	CAP1	cyclase associated actin cytoskeleton regulatory protein 1	protein coding gene	no	.	4.187	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VN1R85P_UP_LS0001	chr19:22178372|22179144:-	VN1R85P	vomeronasal 1 receptor 85 pseudogene	pseudogene	no	.	1.261	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MCM2_LS003	chr3:127599547|127604608:+	MCM2	minichromosome maintenance complex component 7	protein coding gene	no	ENST00000265056.11;ENST00000474964.5;ENST00000480910.1;ENST00000472731.1;ENST00000477668.5	36.171	7.286	4.573	0.981(9395)	0.947(665)	0.925(16079)	non tumor-specific	nAS	yes
HNRNPH1_LS032	chr5:179618323|179619269:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	ENST00000393432.8;ENST00000442819.6;ENST00000356731.9;ENST00000514332.5;ENST00000329433.10;ENST00000510411.5;ENST00000521173.5;ENST00000520415.1;ENST00000523137.5;ENST00000505811.5;ENST00000519056.5	61.620	37.947	110.611	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
UN_PPP2CB_LS0030	chr8:30799755|30812364:-	PPP2CB	protein phosphatase 2 catalytic subunit beta	protein coding gene	yes	.	41.625	18.364	0.000	0.007(69)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
CALD1_LS033	chr7:134950514|134958069:+	CALD1	caldesmon 1	protein coding gene	no	ENST00000417172.5;ENST00000436461.6;ENST00000422748.5;ENST00000430085.5;ENST00000482470.5;ENST00000361675.6;ENST00000361901.6;ENST00000393118.6;ENST00000443197.5;ENST00000424922.5;ENST00000495522.1;ENST00000466704.1	125.382	165.205	218.886	0.978(9373)	0.997(700)	0.974(16926)	non tumor-specific	alt_3prime	yes
UN_SIM2_UP_LS0005	chr21:36697690|36697808:+	SIM2	SIM bHLH transcription factor 2	protein coding gene	no	.	3.414	0.999	0.000	0.007(63)	0.017(12)	0(0)	non tumor-specific	nAS	no
SNX31_LS026	chr8:100636011|100663142:-	SNX31	sorting nexin 31	protein coding gene	no	ENST00000520352.5	0.086	0.037	0.759	0.1(955)	0.08(56)	0.12(2079)	non tumor-specific	exon_skip	yes
UN_AC048382.5_LS0002	chr15:84623535|84631299:-	AC048382.5	-	lncRNA gene	no	.	1.815	0.807	0.000	0.003(26)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_NUP50-DT_LS0040	chr22:45152449|45163518:-	NUP50-DT	NUP50 divergent transcript	lncRNA gene	no	.	1.347	0.322	0.000	0.028(269)	0.019(13)	0(0)	non tumor-specific	nAS	no
TMEM33_LS013	chr4:41949385|41953760:+	TMEM33	transmembrane protein 33	protein coding gene	no	ENST00000513558.1	0.526	0.238	0.850	0.565(5416)	0.433(304)	0.427(7424)	non tumor-specific	nAS	yes
SLC10A2_LS003	chr13:103051432|103052620:-	SLC10A2	solute carrier family 10 member 2	protein coding gene	no	ENST00000245312.4	6.030	3.898	1.288	0.063(599)	0.157(110)	0.03(524)	non tumor-specific	nAS	yes
UN_CR392039.2_UP_LS0001	chr21:9027331|9036227:-	CR392039.2	-	pseudogene	no	.	2.753	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZBTB1_LS0006	chr14:64504946|64510826:+	ZBTB1	zinc finger and BTB domain containing 1	protein coding gene	no	.	1.731	0.395	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
PCNT_LS066	chr21:46444342|46445284:+	PCNT	pericentrin	protein coding gene	no	.;.	1.758	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL157712.1_LS0015	chr10:130303902|130304079:+	AL157712.1	-	lncRNA gene	no	.	2.258	0.088	0.000	0.014(138)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATP6V0A1_LS0023	chr17:42514460|42516772:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	.	3.888	1.690	0.000	0.142(1363)	0.093(65)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SLC20A2_LS038	chr8:42536471|42540915:-	SLC20A2	solute carrier family 20 member 2	protein coding gene	no	ENST00000521455.1	0.584	0.211	1.244	0.763(7313)	0.742(521)	0.671(11656)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ZNF236_LS008	chr18:76875664|76878009:+	ZNF236	zinc finger protein 236	protein coding gene	no	ENST00000320610.13;ENST00000543926.6;ENST00000253159.12;ENST00000579322.1	2.128	1.219	2.895	0.654(6269)	0.758(532)	0.888(15443)	non tumor-specific	nAS	yes
OSBP2_LS021	chr22:30889636|30890728:+	OSBP2	oxysterol binding protein 2	protein coding gene	no	ENST00000438716.3;ENST00000407373.5;ENST00000403222.7;ENST00000332585.10;ENST00000446658.6;ENST00000401475.5;ENST00000437268.6;ENST00000453621.5;ENST00000431368.5;ENST00000535268.5;ENST00000452656.5	6.395	4.220	3.366	0.803(7697)	0.788(553)	0.878(15257)	non tumor-specific	alt_5prime;exon_skip	yes
UN_METAP1_LS0002	chr4:99005836|99028867:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	.	1.573	0.577	0.000	0.006(57)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PCDH15_LS049	chr10:54153293|54183444:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000373965.6;ENST00000644397.1;ENST00000614895.4;ENST00000414778.5;ENST00000616114.4;ENST00000621708.4;ENST00000642496.1;ENST00000617271.4;ENST00000395446.5;ENST00000409834.5;ENST00000613657.4;ENST00000395445.5;ENST00000395438.5;ENST00000612394.4;ENST00000395432.6;ENST00000617051.4;ENST00000622048.4;ENST00000361849.7;ENST00000395430.5;ENST00000395433.5;ENST00000373956.7;ENST00000373957.7;ENST00000448885.5;ENST00000437009.5;ENST00000320301.10;ENST00000373955.5	12.590	0.474	1.666	0.06(572)	0.093(65)	0.177(3072)	non tumor-specific	nAS	yes
CPED1_LS013	chr7:121097831|121099926:+	CPED1	cadherin like and PC-esterase domain containing 1	protein coding gene	no	ENST00000310396.9;ENST00000428526.5;ENST00000450913.6;ENST00000423795.5;ENST00000443817.1	5.859	12.661	8.914	0.548(5250)	0.944(663)	0.855(14860)	non tumor-specific	nAS	yes
UN_AL138895.2_UP_LS0011	chr9:114324088|114331567:+	AL138895.2	-	pseudogene	no	.	318.976	327.390	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CATIP-AS1_UP_LS0004	chr2:218369164|218371857:-	CATIP-AS1	CATIP antisense RNA 1	lncRNA gene	no	.	1.503	0.182	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
NF1_LS058	chr17:31326252|31327499:+	NF1	neurofibromin 1	protein coding gene	yes	ENST00000358273.8;ENST00000356175.7;ENST00000579081.5;ENST00000456735.6;ENST00000493220.5;ENST00000581113.6	12.183	8.098	9.838	0.857(8214)	0.947(665)	0.96(16682)	non tumor-specific	exon_skip	yes
UN_ZDHHC1_LS0005	chr16:67394886|67395002:-	ZDHHC1	zinc finger DHHC-type containing 1	protein coding gene	no	.	3.460	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MYCN_UP_LS0008	chr2:15914158|15935774:+	MYCN	MYCN proto-oncogene, bHLH transcription factor	protein coding gene	yes	.	3.024	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
ICE2_LS002	chr15:60428649|60431934:-	ICE2	interactor of little elongation complex ELL subunit 2	protein coding gene	no	.;.	6.016	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PCOTH_UP_LS0013	chr13:23723109|23734547:+	PCOTH	Pro-X-Gly collagen triple helix like repeat containing	lncRNA gene	no	.	2.077	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FAXDC2_LS016	chr5:154834728|154834843:-	FAXDC2	fatty acid hydroxylase domain containing 2	protein coding gene	no	ENST00000326080.9;ENST00000423554.5;ENST00000517938.5;ENST00000524363.5;ENST00000519501.5;ENST00000523997.5;ENST00000518651.5;ENST00000520968.5;ENST00000517448.5;ENST00000517874.1	13.101	17.098	26.227	0.875(8384)	0.987(693)	0.971(16874)	non tumor-specific	exon_skip	yes
UN_FBXL4_UP_LS0009	chr6:99262232|99268150:-	FBXL4	F-box and leucine rich repeat protein 4	protein coding gene	no	.	6.386	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
GRM6_LS010	chr5:178994960|178995276:-	GRM6	glutamate metabotropic receptor 6	protein coding gene	no	ENST00000517717.2;ENST00000650031.1	0.521	0.207	0.684	0.001(7)	0.001(1)	0.003(59)	non tumor-specific	nAS	yes
UN_AC009119.2_LS0034	chr16:83935360|83949037:+	AC009119.2	-	protein coding gene	no	.	1.129	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MXD3_LS019	chr5:177311514|177311761:-	MXD3	MAX dimerization protein 3	protein coding gene	no	ENST00000513169.1	0.447	0.116	0.680	0.035(335)	0.019(13)	0.079(1375)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MIR6090_UP_LS0015	chr11:128454747|128457479:+	MIR6090	microRNA 6090	small non-coding RNA gene	no	.	0.114	0.078	0.000	0.002(16)	0.013(9)	0(0)	non tumor-specific	nAS	no
RALGAPA2_LS028	chr20:20589365|20591177:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	ENST00000430436.5;ENST00000202677.11	11.549	9.175	8.256	0.79(7567)	0.944(663)	0.958(16652)	non tumor-specific	exon_skip	yes
NOXA1_LS001	chr9:137423706|137426248:+	NOXA1	NADPH oxidase activator 1	protein coding gene	no	ENST00000341349.6;ENST00000392815.2	5.050	3.116	13.214	0.873(8363)	0.967(679)	0.955(16604)	non tumor-specific	alt_5prime	yes
UN_KDM3A_LS0020	chr2:86475010|86477877:+	KDM3A	lysine demethylase 3A	protein coding gene	yes	.	3.332	0.390	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MAN2A2_LS0039	chr15:90918755|90919639:+	MAN2A2	mannosidase alpha class 2A member 2	protein coding gene	no	.	12.051	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_EGF_LS0007	chr4:109922297|109940946:+	EGF	epidermal growth factor	protein coding gene	no	.	0.476	0.104	0.000	0.002(22)	0.021(15)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SEMA5B_LS031	chr3:122948709|122961140:-	SEMA5B	semaphorin 5B	protein coding gene	no	ENST00000451055.6;ENST00000616742.4;ENST00000357599.7;ENST00000475244.5;ENST00000393583.6;ENST00000421053.5;ENST00000465147.2;ENST00000449546.1	4.681	1.150	1.500	0.356(3412)	0.258(181)	0.496(8626)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TCEA1_LS0005	chr8:53970463|53984363:-	TCEA1	transcription elongation factor A1 pseudogene 2	protein coding gene	no	.	1.470	0.192	0.000	0.021(203)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
KIAA0355_LS005	chr19:34299923|34300265:+	KIAA0355	granule associated Rac and RHOG effector 1	protein coding gene	no	ENST00000589583.5	0.137	0.053	0.761	0.341(3269)	0.481(338)	0.331(5756)	non tumor-specific	alt_3prime;intron_retention	yes
PPP2R5C_LS033	chr14:101882271|101883257:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	ENST00000422945.6;ENST00000328724.9;ENST00000557268.5;ENST00000350249.7;ENST00000445439.7;ENST00000334743.9;ENST00000557095.5;ENST00000556570.5;ENST00000554137.5;ENST00000556218.5	78.247	49.692	49.071	0.993(9517)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NPIPB5_LS0201	chr16:22534660|22534711:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	14.845	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM14C_LS023	chr6:10728727|10730615:+	TMEM14C	transmembrane protein 14C	protein coding gene	no	ENST00000541412.5;ENST00000229563.5;ENST00000466421.5;ENST00000467415.5;ENST00000541412.5;ENST00000229563.5;ENST00000466421.5;ENST00000467415.5	387.397	248.829	214.363	0.981(9398)	0.979(687)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NSFP1_LS003	chr17:46409133|46412831:+	NSFP1	N-ethylmaleimide-sensitive factor pseudogene 1	pseudogene	no	ENST00000570034.1	15.230	13.357	0.670	0.919(8807)	0.956(671)	0.047(813)	non tumor-specific	nAS	yes
UN_TALDO1_LS0008	chr11:760229|763372:-	TALDO1	transaldolase 1	protein coding gene	yes	.	2.785	0.166	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
CHN2_LS025	chr7:29480221|29495952:+	CHN2	chimerin 2	protein coding gene	no	ENST00000467441.5	0.345	0.338	1.164	0.216(2070)	0.395(277)	0.249(4325)	non tumor-specific	alt_5prime;exon_skip	yes
YIPF1_LS004	chr1:53852270|53860056:-	YIPF1	Yip1 domain family member 1	protein coding gene	no	ENST00000371399.5;ENST00000072644.6;ENST00000371399.5;ENST00000072644.6	46.491	29.519	15.334	0.945(9056)	0.946(664)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IPO9_LS0013	chr1:201858553|201858842:+	IPO9	importin 9	protein coding gene	no	.	3.677	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
TEX37_LS003	chr2:88526497|88529052:+	TEX37	testis expressed 37	protein coding gene	no	ENST00000303254.3	4.400	0.000	0.696	0.013(123)	0(0)	0.034(593)	non tumor-specific	nAS	yes
MYO6_LS028	chr6:75886994|75890057:+	MYO6	myosin VI	protein coding gene	no	ENST00000369981.7;ENST00000369985.8;ENST00000369977.7;ENST00000615563.4;ENST00000369975.5;ENST00000627432.2	51.859	42.728	22.800	0.959(9188)	0.994(698)	0.956(16625)	non tumor-specific	alt_3prime	yes
UN_PKNOX1_LS0032	chr21:43021240|43021303:+	PKNOX1	PBX/knotted 1 homeobox 1	protein coding gene	yes	.	7.436	4.225	0.000	0.014(138)	0.056(39)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ZBTB44_LS0017	chr11:130264368|130265125:+	ZBTB44	zinc finger and BTB domain containing 44	protein coding gene	no	.	1.177	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
ATP13A1_LS024	chr19:19655654|19655878:-	ATP13A1	ATPase 13A1	protein coding gene	no	ENST00000291503.9;ENST00000473243.5;ENST00000357324.10;ENST00000474955.5	44.919	20.128	38.206	0.988(9463)	0.994(698)	0.979(17016)	non tumor-specific	alt_5prime	yes
COPS6_LS002	chr7:100089066|100089290:+	COPS6	COP9 signalosome subunit 6	protein coding gene	no	ENST00000303904.7;ENST00000465027.1;ENST00000472107.5;ENST00000468499.5;ENST00000496358.1	154.454	76.755	112.856	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DDX60L_LS010	chr4:168378475|168379363:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000510590.1;ENST00000260184.11;ENST00000511577.5	9.326	5.104	6.658	0.894(8569)	0.944(663)	0.947(16467)	non tumor-specific	nAS	yes
RNF123_LS001	chr3:49689606|49691130:+	RNF123	ring finger protein 123	protein coding gene	no	ENST00000327697.10;ENST00000457726.5;ENST00000443204.3;ENST00000486102.5;ENST00000487805.6	5.593	4.701	11.157	0.923(8846)	0.949(666)	0.973(16915)	non tumor-specific	alt_5prime;exon_skip	yes
ELMO1_LS011	chr7:37013431|37096619:-	ELMO1	engulfment and cell motility 1	protein coding gene	no	.;.	12.027	0.073	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ATM_LS0032	chr11:108301798|108302853:+	ATM	ATM serine/threonine kinase	protein coding gene	yes	.	1.493	0.937	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_GBA3_LS0035	chr4:22813663|22818721:+	GBA3	glucosylceramidase beta 3 (gene/pseudogene)	pseudogene	no	.	2.027	1.862	0.000	0.002(16)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_AC087072.2_UP_LS0011	chr7:35916089|35916570:+	AC087072.2	-	pseudogene	no	.	10.164	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TIMMDC1_LS0001	chr3:119498588|119500695:+	TIMMDC1	translocase of inner mitochondrial membrane domain containing 1	protein coding gene	no	.	4.205	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
STAB1_LS025	chr3:52510507|52511650:+	STAB1	stabilin 1	protein coding gene	no	ENST00000321725.10	7.616	4.199	26.528	0.767(7351)	0.89(625)	0.935(16257)	non tumor-specific	nAS	yes
UN_AL109615.3_LS0003	chr6:43997716|43998951:+	AL109615.3	-	lncRNA gene	no	.	3.313	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
HNRNPD_LS029	chr4:82373777|82374119:-	HNRNPD	heterogeneous nuclear ribonucleoprotein D	protein coding gene	no	ENST00000503822.1	0.040	0.036	1.508	0.797(7637)	0.775(544)	0.777(13504)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02532_LS0049	chr6:106745208|106746406:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	.	6.145	2.698	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
IFT81_LS025	chr12:110205680|110209171:+	IFT81	intraflagellar transport 81	protein coding gene	no	ENST00000552912.5;ENST00000242591.9;ENST00000550156.5;ENST00000550748.1	25.482	11.847	24.648	0.98(9391)	0.977(686)	0.953(16560)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GLUL_LS0107	chr1:182388750|182390004:-	GLUL	glutamate-ammonia ligase	protein coding gene	no	.	6.836	2.076	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_DEF6_LS0032	chr6:35318999|35319524:+	DEF6	defensin alpha 6	protein coding gene	no	.	1.756	0.137	0.000	0.022(214)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_NPIPB4_LS0085	chr16:21837281|21837477:+	NPIPB4	nuclear pore complex interacting protein family member B4	protein coding gene	no	.	14.101	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ELP2_LS0011	chr18:36146381|36156466:+	ELP2	elongator acetyltransferase complex subunit 2	protein coding gene	no	.	3.010	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
PMPCB_LS011	chr7:103304490|103308952:+	PMPCB	peptidase, mitochondrial processing subunit beta	protein coding gene	no	ENST00000456433.5	0.300	0.165	12.744	0.942(9027)	0.917(644)	0.976(16969)	non tumor-specific	exon_skip	yes
UN_TMED7_UP_LS0003	chr5:115634602|115642254:-	TMED7	transmembrane p24 trafficking protein 7	protein coding gene	no	.	1.262	0.184	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
INTS8_LS005	chr8:94823561|94827263:+	INTS8	integrator complex subunit 8	protein coding gene	yes	ENST00000519053.5	0.026	0.045	1.179	0.601(5759)	0.593(416)	0.582(10123)	non tumor-specific	alt_5prime;exon_skip	yes
TESK1_LS012	chr9:35608011|35608160:+	TESK1	testis associated actin remodelling kinase 1	protein coding gene	no	ENST00000620767.4;ENST00000336395.5;ENST00000498522.5;ENST00000467424.5;ENST00000463897.1;ENST00000480077.2	56.665	38.006	84.801	0.995(9537)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
BIRC2_LS027	chr11:102350943|102362896:+	BIRC2	baculoviral IAP repeat containing 2	protein coding gene	yes	ENST00000530675.5;ENST00000227758.6;ENST00000532672.5;ENST00000621637.1;ENST00000613397.4;ENST00000527910.5	65.343	46.499	49.919	0.991(9491)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DOCK4_LS055	chr7:111984390|111989015:-	DOCK4	dedicator of cytokinesis 4	protein coding gene	no	ENST00000428084.5;ENST00000437633.5;ENST00000445943.5;ENST00000494651.7;ENST00000476846.5;ENST00000468571.1	4.451	3.978	3.447	0.592(5675)	0.792(556)	0.906(15755)	non tumor-specific	nAS	yes
NOS1_LS014	chr12:117253754|117258397:-	NOS1	nitric oxide synthase 1	protein coding gene	no	ENST00000317775.10;ENST00000344089.4	3.324	2.103	1.778	0.071(680)	0.296(208)	0.403(7008)	non tumor-specific	exon_skip	yes
UN_TIMD4_LS0011	chr5:156948320|156948416:-	TIMD4	T cell immunoglobulin and mucin domain containing 4	protein coding gene	no	.	4.471	1.007	0.000	0.01(99)	0.023(16)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
BLM_LS020	chr15:90790844|90794167:+	BLM	BLM RecQ like helicase	protein coding gene	yes	ENST00000355112.7;ENST00000648453.1;ENST00000560509.5;ENST00000559724.5;ENST00000560136.5;ENST00000560559.1	8.734	1.082	2.306	0.885(8481)	0.699(491)	0.721(12525)	non tumor-specific	nAS	yes
RRP8_LS001	chr11:6600265|6600486:-	RRP8	ribosomal RNA processing 8	protein coding gene	no	ENST00000254605.10;ENST00000534343.1	5.591	4.734	35.167	0.962(9218)	0.983(690)	0.979(17019)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RHOBTB1_LS0017	chr10:60885828|60886112:-	RHOBTB1	Rho related BTB domain containing 1	protein coding gene	no	.	2.585	0.058	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
SPATA6_LS001	chr1:48298893|48305787:-	SPATA6	spermatogenesis associated 6	protein coding gene	no	ENST00000371847.7;ENST00000396199.7;ENST00000371843.7;ENST00000603831.5	6.872	5.298	9.172	0.793(7594)	0.906(636)	0.955(16602)	non tumor-specific	exon_skip	yes
TCEAL1_LS004	chrX:103629573|103629885:+	TCEAL1	transcription elongation factor A like 1	protein coding gene	no	ENST00000372625.7	1.601	1.673	7.880	0.943(9037)	0.974(684)	0.947(16454)	non tumor-specific	alt_5prime;intron_retention	yes
ARID5A_LS010	chr2:96550285|96550574:+	ARID5A	AT-rich interaction domain 5A	protein coding gene	no	ENST00000357485.7;ENST00000412735.5;ENST00000467498.5;ENST00000454558.2;ENST00000497920.1	32.499	24.210	46.323	0.99(9483)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SH2D4B_LS004	chr10:80571578|80588630:+	SH2D4B	SH2 domain containing 4B	protein coding gene	no	ENST00000339284.6;ENST00000646907.1;ENST00000313455.5	1.736	0.243	0.705	0.004(42)	0.02(14)	0.12(2086)	non tumor-specific	nAS	yes
UN_POTEC_UP_LS0003	chr18:14560528|14576889:-	POTEC	POTE ankyrin domain family member C	protein coding gene	no	.	1.620	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SPATA7_LS013	chr14:88396203|88414674:+	SPATA7	spermatogenesis associated 7	protein coding gene	no	ENST00000555356.5;ENST00000555515.5;ENST00000553908.5	0.013	0.051	0.702	0.059(570)	0.08(56)	0.103(1784)	non tumor-specific	exon_skip	yes
AC027312.1_LS002	chr5:170678562|170678928:-	AC027312.1	-	lncRNA gene	no	ENST00000523591.1	0.757	0.000	0.761	0(2)	0(0)	0.003(60)	non tumor-specific	nAS	yes
ZNF468_LS005	chr19:52846611|52849087:-	ZNF468	zinc finger protein 468	protein coding gene	no	ENST00000597924.5	0.072	0.085	0.596	0.011(109)	0.021(15)	0.009(161)	non tumor-specific	nAS	yes
RNASEH1_LS005	chr2:3549112|3550373:-	RNASEH1	ribonuclease H1 pseudogene 1	protein coding gene	no	ENST00000436842.5;ENST00000315212.3	40.968	19.527	22.211	0.997(9550)	0.997(700)	0.979(17016)	non tumor-specific	nAS	yes
ZNF490_LS004	chr19:12583556|12609158:-	ZNF490	zinc finger protein 490	protein coding gene	no	ENST00000311437.10;ENST00000414906.5;ENST00000465656.1	4.286	2.278	1.659	0.753(7216)	0.801(562)	0.781(13575)	non tumor-specific	nAS	yes
UN_DIDO1_LS0063	chr20:62914406|62937139:-	DIDO1	death inducer-obliterator 1	protein coding gene	yes	.	2.256	0.000	0.000	0.005(45)	0(0)	0(0)	non tumor-specific	nAS	no
TTC24_LS010	chr1:156584974|156585125:+	TTC24	tetratricopeptide repeat domain 24	protein coding gene	no	ENST00000368236.7;ENST00000368237.3;ENST00000413282.6;ENST00000495690.6;ENST00000478081.1;ENST00000462049.1	0.977	0.282	0.989	0.298(2851)	0.191(134)	0.246(4278)	non tumor-specific	intron_retention	yes
MYO1C_LS043	chr17:1484303|1491600:-	MYO1C	myosin IE	protein coding gene	no	ENST00000361007.7	3.611	3.468	10.367	0.898(8602)	0.944(663)	0.922(16033)	non tumor-specific	exon_skip	yes
UN_RORA_LS0007	chr15:60503664|60505508:-	RORA	RAR related orphan receptor A	protein coding gene	no	.	2.004	0.478	0.000	0.011(102)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
AL590068.2_LS001	chr10:30576837|30579944:+	AL590068.2	-	lncRNA gene	no	ENST00000426067.1	0.157	0.000	0.539	0(2)	0(0)	0(4)	non tumor-specific	nAS	yes
UN_SLC9A3_LS0132	chr5:475319|476132:+	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	.	4.843	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF71_LS006	chr19:56601591|56613812:+	ZNF71	zinc finger protein 71	protein coding gene	no	ENST00000599599.6	0.229	0.212	1.529	0.477(4568)	0.546(383)	0.768(13350)	non tumor-specific	exon_skip	yes
UN_ACTG2_LS0018	chr2:73914851|73919500:-	ACTG2	actin gamma 2, smooth muscle	protein coding gene	no	.	5.760	5.416	0.000	0.003(25)	0.013(9)	0(0)	non tumor-specific	nAS	no
STAM_LS014	chr10:17705024|17705588:+	STAM	signal transducing adaptor molecule	protein coding gene	no	ENST00000377524.7	43.785	26.229	20.290	0.979(9381)	0.991(696)	0.978(17001)	non tumor-specific	exon_skip	yes
SETD1B_LS003	chr12:121805216|121805835:+	SETD1B	SET domain containing 1B, histone lysine methyltransferase	protein coding gene	no	ENST00000604567.5;ENST00000542440.5;ENST00000267197.9;ENST00000619791.1	15.369	9.176	12.411	0.919(8802)	0.953(669)	0.968(16820)	non tumor-specific	alt_3prime	yes
UN_AF064858.3_UP_LS0001	chr21:39011398|39017012:-	AF064858.3	-	lncRNA gene	no	.	1.487	0.056	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC002451.1_UP_LS0002	chr7:95545279|95551026:+	AC002451.1	-	lncRNA gene	no	.	3.030	2.155	0.000	0.181(1732)	0.433(304)	0(0)	non tumor-specific	nAS	no
BTN3A2_LS029	chr6:26368912|26372897:+	BTN3A2	butyrophilin subfamily 3 member A2	protein coding gene	no	ENST00000527417.5;ENST00000532627.5;ENST00000527417.5;ENST00000532627.5	0.305	0.263	3.835	0.594(5687)	0.642(451)	0.135(2348)	non tumor-specific	alt_3prime;exon_skip	yes
RNF213_LS050	chr17:80364553|80365666:+	RNF213	ring finger protein 213	protein coding gene	no	.;.	1.131	0.953	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
C6orf201_LS008	chr6:4122046|4124979:+	C6orf201	chromosome 6 open reading frame 201	protein coding gene	no	ENST00000427996.5	0.014	0.000	0.739	0(3)	0(0)	0.006(97)	non tumor-specific	exon_skip	yes
PPP1R12B_LS009	chr1:202430810|202431480:+	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	ENST00000391959.5;ENST00000608999.5;ENST00000480184.5;ENST00000356764.6;ENST00000476364.5;ENST00000466968.1;ENST00000488330.1	2.033	1.505	3.723	0.688(6591)	0.749(526)	0.932(16203)	non tumor-specific	alt_5prime;exon_skip	yes
TBX2_LS006	chr17:61401951|61403061:+	TBX2	T-box transcription factor 2	protein coding gene	yes	ENST00000240328.3;ENST00000419047.5;ENST00000477081.1;ENST00000240328.3;ENST00000419047.5;ENST00000477081.1;ENST00000240328.3;ENST00000419047.5;ENST00000477081.1	52.441	42.879	41.299	0.952(9125)	0.984(691)	0.943(16392)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC007493.1_LS0019	chr16:50524967|50525573:+	AC007493.1	-	lncRNA gene	no	.	1.454	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MTDH_LS002	chr8:97661173|97686668:+	MTDH	metadherin	protein coding gene	yes	ENST00000336273.7;ENST00000519934.5;ENST00000522313.1	74.884	43.218	37.608	0.976(9347)	0.994(698)	0.978(17008)	non tumor-specific	exon_skip	yes
CTNND2_LS022	chr5:11364890|11384510:-	CTNND2	catenin delta 2	protein coding gene	yes	ENST00000495388.6	0.423	0.000	0.953	0.003(28)	0(0)	0.009(155)	non tumor-specific	alt_5prime	yes
LINC01050_LS002	chr13:42811842|42812392:-	LINC01050	long intergenic non-protein coding RNA 1050	lncRNA gene	no	ENST00000604485.1	2.023	0.530	0.787	0.039(373)	0.009(6)	0.066(1153)	non tumor-specific	nAS	yes
VPS33B_LS029	chr15:91014433|91022154:-	VPS33B	VPS33B late endosome and lysosome associated	protein coding gene	no	ENST00000557358.1	0.149	0.109	1.264	0.494(4731)	0.504(354)	0.649(11275)	non tumor-specific	exon_skip	yes
SF3B1_LS006	chr2:197398581|197400055:-	SF3B1	splicing factor 3b subunit 1	protein coding gene	no	ENST00000335508.10	354.319	191.209	279.983	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_VARS_LS0044	chr6:31784493|31784595:-	VARS	valyl-tRNA synthetase 1	protein coding gene	no	.	18.360	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PTER_LS007	chr10:16437490|16484337:+	PTER	phosphotriesterase related	protein coding gene	no	ENST00000378000.5;ENST00000378000.5	6.653	6.484	1.241	0.746(7147)	0.9(632)	0.602(10469)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_NNT_LS0028	chr5:43656013|43656690:+	NNT	nicotinamide nucleotide transhydrogenase	protein coding gene	no	.	8.604	0.370	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC004947.2_UP_LS0006	chr7:26495199|26496114:+	AC004947.2	-	lncRNA gene	no	.	4.605	2.007	0.000	0.292(2794)	0.281(197)	0(0)	non tumor-specific	nAS	no
ADHFE1_LS014	chr8:66439735|66440162:+	ADHFE1	alcohol dehydrogenase iron containing 1	protein coding gene	no	ENST00000518781.1	0.180	0.093	1.371	0.157(1502)	0.224(157)	0.625(10858)	non tumor-specific	alt_5prime	yes
ANKRD52_LS012	chr12:56248224|56248495:-	ANKRD52	ankyrin repeat domain 52	protein coding gene	no	ENST00000267116.7	19.799	12.923	13.736	0.89(8530)	0.926(650)	0.969(16835)	non tumor-specific	exon_skip	yes
CARD14_LS051	chr17:80207085|80208138:+	CARD14	caspase recruitment domain family member 14	protein coding gene	no	ENST00000573882.5;ENST00000648509.1;ENST00000575500.5;ENST00000344227.6;ENST00000649277.1	5.231	2.214	1.994	0.425(4075)	0.268(188)	0.511(8876)	non tumor-specific	alt_3prime;intron_retention	yes
OSBPL8_LS002	chr12:76356728|76358706:-	OSBPL8	oxysterol binding protein like 8	protein coding gene	no	ENST00000393249.6;ENST00000261183.7;ENST00000611266.4;ENST00000393250.8	43.733	31.763	23.188	0.973(9324)	0.99(695)	0.978(16995)	non tumor-specific	exon_skip	yes
ZNF200_LS013	chr16:3235445|3235933:-	ZNF200	zinc finger protein 200	protein coding gene	no	.;.	0.501	0.570	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AL121672.3_UP_LS0003	chr22:46015402|46020821:+	AL121672.3	-	lncRNA gene	no	.	1.556	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM28_LS011	chr19:58547713|58547792:+	TRIM28	tripartite motif containing 28	protein coding gene	yes	ENST00000594806.5;ENST00000253024.9;ENST00000341753.10;ENST00000597618.5;ENST00000597172.5;ENST00000601150.5	392.176	183.555	188.607	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TOE1_LS0009	chr1:45343524|45343575:-	TOE1	target of EGR1, exonuclease	protein coding gene	no	.	2.166	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAP4_LS0105	chr3:47875828|47877417:-	MAP4	microtubule associated protein 4	protein coding gene	no	.	7.255	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CHD9_LS027	chr16:53247503|53249871:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	ENST00000447540.5;ENST00000615216.4;ENST00000566029.5;ENST00000564845.5;ENST00000398510.7;ENST00000564255.5;ENST00000565803.2;ENST00000219084.10;ENST00000565119.1	2.595	2.031	6.165	0.743(7114)	0.89(625)	0.93(16167)	non tumor-specific	exon_skip	yes
SLC22A16_LS010	chr6:110442775|110456900:-	SLC22A16	solute carrier family 22 member 16	protein coding gene	no	.;.	1.840	0.094	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PLEKHA6_LS0065	chr1:204268312|204270825:-	PLEKHA6	pleckstrin homology domain containing A6	protein coding gene	no	.	0.850	0.154	0.000	0.009(85)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SPG21_LS025	chr15:64988816|64989406:-	SPG21	SPG21 abhydrolase domain containing, maspardin	protein coding gene	no	ENST00000557795.5;ENST00000558415.5	0.011	0.015	0.670	0.142(1356)	0.188(132)	0.124(2154)	non tumor-specific	exon_skip	yes
SPNS1_LS018	chr16:28979471|28983786:+	SPNS1	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000564476.1	0.288	0.157	0.719	0.554(5311)	0.406(285)	0.104(1815)	non tumor-specific	exon_skip	yes
IQCK_LS014	chr16:19761420|19763848:+	IQCK	IQ motif containing K	protein coding gene	no	ENST00000562762.5;ENST00000568236.2	0.244	0.063	0.695	0.032(310)	0.009(6)	0.013(231)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC007262.2_LS0003	chr14:81107180|81154039:-	AC007262.2	-	lncRNA gene	no	.	1.936	0.593	0.000	0.002(16)	0.007(5)	0(0)	non tumor-specific	nAS	no
DCPS_LS006	chr11:126327963|126330307:+	DCPS	decapping enzyme, scavenger	protein coding gene	no	.;.;.	4.170	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ARFGAP2_LS034	chr11:47173840|47175182:-	ARFGAP2	ADP ribosylation factor GTPase activating protein 2	protein coding gene	no	ENST00000426335.6;ENST00000529439.5;ENST00000426335.6;ENST00000529439.5;ENST00000426335.6;ENST00000529439.5	0.560	0.869	1.000	0.771(7384)	0.832(584)	0.568(9870)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
CAMTA1_LS007	chr1:6825210|6871757:+	CAMTA1	calmodulin binding transcription activator 1	protein coding gene	yes	ENST00000490738.5;ENST00000476163.5;ENST00000473578.5;ENST00000467404.6;ENST00000461311.1;ENST00000486138.1	117.066	81.623	125.855	0.999(9575)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
LIMA1_LS010	chr12:50192564|50195830:-	LIMA1	LIM domain and actin binding 1	protein coding gene	yes	ENST00000394943.7;ENST00000552783.5	4.085	6.406	7.942	0.932(8932)	0.977(686)	0.912(15859)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF608_LS005	chr5:124637906|124639133:-	ZNF608	zinc finger protein 608	protein coding gene	no	ENST00000504926.5;ENST00000613878.4;ENST00000306315.9;ENST00000504926.5;ENST00000613878.4;ENST00000306315.9;ENST00000504926.5;ENST00000613878.4;ENST00000306315.9	13.068	6.862	6.646	0.819(7847)	0.916(643)	0.941(16350)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_KLHDC7B_LS0003	chr22:50546468|50547408:-	KLHDC7B	kelch domain containing 7B	protein coding gene	no	.	1.569	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
INTS3_LS030	chr1:153765063|153767674:+	INTS3	integrator complex subunit 3	protein coding gene	yes	ENST00000318967.6;ENST00000435409.6;ENST00000481797.5;ENST00000512605.4;ENST00000476843.5;ENST00000503133.5	87.011	48.309	77.242	0.993(9513)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime	yes
METTL14_LS015	chr4:118705821|118709998:+	METTL14	methyltransferase like 14	protein coding gene	no	ENST00000388822.9;ENST00000628452.2	8.239	6.624	12.209	0.949(9096)	0.976(685)	0.977(16977)	non tumor-specific	exon_skip	yes
SEC24D_LS019	chr4:118760607|118764802:-	SEC24D	SEC24 homolog D, COPII coat complex component	protein coding gene	no	ENST00000505134.5;ENST00000514561.5	0.519	0.617	0.725	0.001(7)	0.001(1)	0.225(3913)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ENPP7P6_LS0014	chr8:12487908|12488485:-	ENPP7P6	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6	pseudogene	no	.	2.676	2.412	0.000	0.059(564)	0.084(59)	0(0)	non tumor-specific	nAS	no
SLC12A8_LS027	chr3:125177974|125187237:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	ENST00000393469.8;ENST00000469902.5;ENST00000462437.1	5.317	3.145	1.625	0.691(6624)	0.855(600)	0.4(6960)	non tumor-specific	alt_3prime;exon_skip	yes
IFI44L_LS012	chr1:78620971|78628951:+	IFI44L	interferon induced protein 44 like	protein coding gene	no	ENST00000459784.5;ENST00000459784.5	1.007	0.455	0.864	0.058(551)	0.023(16)	0.165(2875)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SUGCT_LS0002	chr7:40139339|40141824:+	SUGCT	succinyl-CoA:glutarate-CoA transferase	protein coding gene	no	.	0.583	0.368	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_RPL7L1_LS0039	chr6:42887623|42888243:-	RPL7L1	ribosomal protein L7 like 1	protein coding gene	no	.	1.935	0.104	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
DYNC2H1_LS087	chr11:103321241|103323886:+	DYNC2H1	dynein cytoplasmic 2 heavy chain 1	protein coding gene	no	ENST00000528670.5	0.086	0.269	0.691	0.307(2943)	0.427(300)	0.034(593)	non tumor-specific	alt_5prime	yes
UN_SLC25A6_LS0065	chrX:1386625|1387329:+	SLC25A6	solute carrier family 25 member 6	protein coding gene	no	.	3.711	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LMBR1L_LS022	chr12:49102951|49104746:-	LMBR1L	limb development membrane protein 1 like	protein coding gene	no	ENST00000547675.5	0.035	0.029	0.644	0.192(1839)	0.125(88)	0.066(1148)	non tumor-specific	exon_skip	yes
SNHG1_LS017	chr11:62854938|62855133:-	SNHG1	small nucleolar RNA host gene 1	lncRNA gene	no	ENST00000539921.5;ENST00000540725.5;ENST00000537925.5;ENST00000537869.5;ENST00000541578.5;ENST00000545688.5;ENST00000544550.5;ENST00000540865.5;ENST00000535689.5;ENST00000537024.5;ENST00000539303.5;ENST00000541416.5;ENST00000545308.5	57.430	13.475	51.117	0.994(9521)	0.994(698)	0.979(17019)	non tumor-specific	nAS	yes
UN_RF00019_UP_LS0293	chr12:114665929|114668986:-	RF00019	-	small non-coding RNA gene	no	.	1.586	1.097	0.000	0.002(16)	0.01(7)	0(0)	non tumor-specific	nAS	no
LUCAT1_LS025	chr5:91311032|91313638:-	LUCAT1	lung cancer associated transcript 1	lncRNA gene	no	ENST00000648636.1;ENST00000650381.1;ENST00000650261.1	2.085	0.251	0.000	0.024(229)	0.001(1)	0(0)	non tumor-specific	nAS	yes
ENOX1_LS004	chr13:43265454|43269470:-	ENOX1	ecto-NOX disulfide-thiol exchanger 1	protein coding gene	no	ENST00000261488.10	5.474	4.251	4.693	0.517(4955)	0.588(413)	0.833(14485)	non tumor-specific	exon_skip	yes
SUCLA2_LS008	chr13:47943445|47948940:-	SUCLA2	succinate-CoA ligase ADP-forming subunit beta	protein coding gene	no	ENST00000643584.1;ENST00000493152.6;ENST00000646932.1;ENST00000378654.8;ENST00000643023.1;ENST00000646804.1;ENST00000647361.1;ENST00000642944.1;ENST00000467222.1	45.331	38.743	76.143	0.993(9512)	0.993(697)	0.978(17006)	non tumor-specific	exon_skip	yes
IL12B_LS005	chr5:159322511|159323054:-	IL12B	interleukin 12B	protein coding gene	no	ENST00000231228.2	2.402	0.251	0.726	0.023(217)	0.01(7)	0.026(445)	non tumor-specific	nAS	yes
AC108134.3_LS002	chr16:3078464|3078570:-	AC108134.3	-	lncRNA gene	no	ENST00000571404.5	0.149	0.098	0.918	0.124(1187)	0.157(110)	0.334(5805)	non tumor-specific	nAS	yes
UN_CDK11B_LS0009	chr1:1637235|1637408:-	CDK11B	cyclin dependent kinase 11B	protein coding gene	no	.	6.620	4.314	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RASIP1_LS0030	chr19:48728368|48734826:+	RASIP1	Ras interacting protein 1	protein coding gene	no	.	2.203	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_JAG2_LS0057	chr14:105157763|105167968:-	JAG2	jagged canonical Notch ligand 2	protein coding gene	no	.	0.601	0.136	0.000	0.015(141)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_C6orf120_LS0007	chr6:169703289|169703549:+	C6orf120	chromosome 6 open reading frame 120	protein coding gene	no	.	3.110	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
CEP170_LS030	chr1:243186072|243186259:-	CEP170	centrosomal protein 170	protein coding gene	no	ENST00000366542.5;ENST00000461671.1;ENST00000521911.1	4.582	1.825	4.339	0.815(7809)	0.86(604)	0.924(16065)	non tumor-specific	exon_skip;intron_retention	yes
CASKIN1_LS010	chr16:2185199|2185307:-	CASKIN1	CASK interacting protein 1	protein coding gene	no	ENST00000343516.7	3.976	5.070	2.352	0.239(2291)	0.06(42)	0.543(9439)	non tumor-specific	nAS	yes
NUMA1_LS036	chr11:72018980|72019494:-	NUMA1	nuclear mitotic apparatus protein 1	protein coding gene	no	ENST00000351960.10;ENST00000358965.10;ENST00000393695.7;ENST00000620566.4;ENST00000613205.4;ENST00000616538.4;ENST00000542977.5;ENST00000537217.5;ENST00000534987.5;ENST00000540843.5;ENST00000536119.5;ENST00000544238.5;ENST00000543937.5	101.641	81.554	64.785	0.973(9324)	0.989(694)	0.979(17017)	non tumor-specific	nAS	yes
UN_LINC02103_UP_LS0023	chr5:28709974|28808956:-	LINC02103	long intergenic non-protein coding RNA 2103	lncRNA gene	no	.	5.515	0.095	0.000	0.022(207)	0.001(1)	0(0)	non tumor-specific	nAS	no
UNC13C_LS029	chr15:54525637|54532917:+	UNC13C	unc-13 homolog C	protein coding gene	no	ENST00000647821.1;ENST00000260323.15;ENST00000559093.1	4.900	1.868	3.177	0.037(359)	0.066(46)	0.363(6304)	non tumor-specific	nAS	yes
UN_RF00026_UP_LS0028	chr4:70899717|70901949:-	RF00026	-	small non-coding RNA gene	no	.	4.362	1.704	0.000	0.355(3400)	0.362(254)	0(0)	non tumor-specific	nAS	no
WDR64_LS017	chr1:241771697|241772792:+	WDR64	WD repeat domain 64	protein coding gene	no	ENST00000366552.6;ENST00000472717.6;ENST00000425826.2;ENST00000478331.1	3.672	0.000	0.705	0.004(35)	0(0)	0.044(768)	non tumor-specific	exon_skip	yes
HTR3A_LS002	chr11:113977576|113977771:+	HTR3A	5-hydroxytryptamine receptor 3A	protein coding gene	no	ENST00000299961.5	0.242	0.481	0.810	0.076(729)	0.058(41)	0.02(346)	non tumor-specific	alt_3prime	yes
CLCA1_LS012	chr1:86495675|86498572:+	CLCA1	chloride channel accessory 1	protein coding gene	no	ENST00000234701.7;ENST00000394711.1	20.122	233.994	0.900	0.075(723)	0.098(69)	0.154(2685)	non tumor-specific	nAS	yes
UN_COQ2_LS0004	chr4:83279114|83282414:-	COQ2	coenzyme Q2, polyprenyltransferase	protein coding gene	no	.	2.198	0.535	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
RPL39L_LS005	chr3:187173675|187180665:-	RPL39L	ribosomal protein L39 like	protein coding gene	no	ENST00000433055.1	0.941	0.001	0.667	0.006(61)	0.003(2)	0.002(43)	non tumor-specific	nAS	yes
RBM33_LS015	chr7:155707380|155711203:+	RBM33	RNA binding motif protein 33	protein coding gene	no	ENST00000307403.6	0.019	0.001	0.657	0.032(304)	0.027(19)	0.101(1751)	non tumor-specific	alt_3prime;exon_skip	yes
CDK13_LS019	chr7:40078121|40078720:+	CDK13	cyclin dependent kinase 13	protein coding gene	no	ENST00000181839.9;ENST00000340829.10;ENST00000646039.1;ENST00000611390.1;ENST00000643859.1;ENST00000643915.1;ENST00000478563.2;ENST00000644221.1;ENST00000644561.1	14.581	8.527	19.494	0.979(9377)	0.986(692)	0.977(16976)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
YDJC_LS008	chr22:21629407|21629851:-	YDJC	YdjC chitooligosaccharide deacetylase homolog	protein coding gene	no	.;.	4.795	0.514	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SLC16A9_LS0028	chr10:59692815|59709479:-	SLC16A9	solute carrier family 16 member 9	protein coding gene	no	.	0.959	0.654	0.000	0.007(63)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_HOXA3_LS0062	chr7:27122839|27123460:+	HOXA3	homeobox A3	protein coding gene	no	.	7.637	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GUCA1C_LS002	chr3:108908209|108916127:-	GUCA1C	guanylate cyclase activator 1C	protein coding gene	no	ENST00000261047.7	38.149	4.885	2.948	0.015(143)	0.114(80)	0.093(1614)	non tumor-specific	alt_5prime	yes
UBAP2_LS014	chr9:33927992|33932562:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	ENST00000379239.8;ENST00000379238.5;ENST00000360802.5;ENST00000629575.2;ENST00000379239.8;ENST00000379238.5;ENST00000360802.5;ENST00000629575.2	36.296	19.679	25.336	0.98(9387)	0.986(692)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
HSPB8_LS001	chr12:119179679|119187025:+	HSPB8	heat shock protein family B (small) member 8	protein coding gene	no	ENST00000281938.6;ENST00000541798.1	71.359	106.928	184.045	0.951(9115)	0.996(699)	0.967(16805)	non tumor-specific	exon_skip	yes
UN_ATP5MC2P1_UP_LS0004	chr1:209284542|209285902:-	ATP5MC2P1	ATP synthase membrane subunit c locus 2 pseudogene 1	pseudogene	no	.	1.810	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SSX2B_LS014	chrX:52760448|52789696:+	SSX2B	SSX family member 2B	protein coding gene	yes	ENST00000616191.4	0.269	0.000	0.859	0.013(127)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_KDELC2_UP_LS0001	chr11:108593504|108607483:-	KDELC2	protein O-glucosyltransferase 3	protein coding gene	no	.	1.769	0.355	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_COX19_LS0057	chr7:935505|949521:-	COX19	cytochrome c oxidase assembly factor COX19	protein coding gene	no	.	3.139	0.659	0.000	0.038(366)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_TRERF1_LS0037	chr6:42300748|42362997:-	TRERF1	transcriptional regulating factor 1	protein coding gene	no	.	1.712	0.286	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
PSAP_LS004	chr10:71818724|71819031:-	PSAP	prosaposin	protein coding gene	no	ENST00000394936.7;ENST00000610929.3;ENST00000394934.4;ENST00000495196.1	2704.986	1813.091	1284.442	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UBASH3B_LS011	chr11:122796276|122796911:+	UBASH3B	ubiquitin associated and SH3 domain containing B	protein coding gene	no	ENST00000284273.5;ENST00000530578.1	8.030	5.250	2.770	0.824(7893)	0.836(587)	0.777(13502)	non tumor-specific	nAS	yes
UN_STRBP_LS0010	chr9:123125673|123132845:-	STRBP	spermatid perinuclear RNA binding protein	protein coding gene	no	.	0.258	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
PPP4R3A_LS006	chr14:91465419|91466261:-	PPP4R3A	protein phosphatase 4 regulatory subunit 3A	protein coding gene	no	ENST00000555718.5;ENST00000554308.5	8.361	5.614	18.432	0.961(9210)	0.986(692)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_IGF2-AS_UP_LS0016	chr11:2011690|2013104:+	IGF2-AS	IGF2 antisense RNA	lncRNA gene	no	.	1.730	0.167	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNLZ_LS001	chr9:136362180|136362989:-	DNLZ	DNL-type zinc finger	protein coding gene	no	ENST00000371738.3	69.260	28.332	50.330	0.97(9292)	0.959(673)	0.979(17021)	non tumor-specific	nAS	yes
RBM18_LS005	chr9:122247604|122251847:-	RBM18	RNA binding motif protein 18	protein coding gene	no	ENST00000417201.3;ENST00000483428.1	44.171	28.378	19.702	0.992(9505)	0.997(700)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MED22_LS0009	chr9:133341917|133342188:+	MED22	mediator complex subunit 22	protein coding gene	no	.	1.573	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MAGI2_LS040	chr7:78521645|78567949:-	MAGI2	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein coding gene	no	ENST00000635863.1;ENST00000637728.1	3.965	0.338	0.891	0.005(51)	0.009(6)	0.024(415)	non tumor-specific	nAS	yes
CIZ1_LS012	chr9:128169519|128169623:-	CIZ1	CDKN1A interacting zinc finger protein 1	protein coding gene	yes	ENST00000538431.5;ENST00000471839.5	0.430	0.241	1.807	0.607(5812)	0.584(410)	0.798(13864)	non tumor-specific	alt_5prime;exon_skip	yes
PHOX2A_LS005	chr11:72240198|72241102:-	PHOX2A	paired like homeobox 2A	protein coding gene	yes	ENST00000298231.5;ENST00000544057.1;ENST00000298231.5;ENST00000544057.1;ENST00000298231.5;ENST00000544057.1	11.750	1.175	1.550	0.079(759)	0.066(46)	0.1(1745)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL157832.3_LS002	chr10:129792034|129799666:+	AL157832.3	-	lncRNA gene	no	ENST00000635764.1	1.917	0.629	0.872	0.01(94)	0.007(5)	0.26(4518)	non tumor-specific	nAS	yes
RASA1_LS017	chr5:87362671|87363348:+	RASA1	RAS p21 protein activator 1	protein coding gene	no	ENST00000274376.10;ENST00000515800.6;ENST00000456692.6;ENST00000512763.5;ENST00000506290.1;ENST00000509953.1	26.414	19.120	14.133	0.947(9072)	0.981(689)	0.97(16864)	non tumor-specific	exon_skip	yes
AC099329.1_LS006	chr3:42835959|42852375:-	AC099329.1	-	lncRNA gene	no	ENST00000629885.1	0.231	0.150	0.816	0.041(394)	0.137(96)	0.163(2840)	non tumor-specific	nAS	yes
ELMSAN1_LS008	chr14:73726972|73727458:-	ELMSAN1	mitotic deacetylase associated SANT domain protein	protein coding gene	no	ENST00000394071.6;ENST00000286523.9;ENST00000423556.6;ENST00000451078.5;ENST00000435371.1	15.588	13.443	10.056	0.893(8556)	0.96(674)	0.96(16694)	non tumor-specific	exon_skip;intron_retention	yes
PI4KAP1_LS010	chr22:18540645|18543667:-	PI4KAP1	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudogene	no	ENST00000617243.4;ENST00000618794.4;ENST00000612579.4;ENST00000612500.4;ENST00000611748.1	3.792	2.168	10.224	0.86(8237)	0.875(614)	0.946(16446)	non tumor-specific	nAS	yes
UN_AC104117.4_UP_LS0008	chr5:179052789|179053684:-	AC104117.4	-	pseudogene	no	.	1.292	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HEATR6_LS033	chr17:60074159|60076130:-	HEATR6	HEAT repeat containing 6	protein coding gene	no	ENST00000590587.1;ENST00000592664.1	0.149	0.039	1.076	0.415(3972)	0.349(245)	0.549(9544)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
MTOR_LS037	chr1:11209458|11210814:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	18.727	13.904	14.064	0.922(8838)	0.97(681)	0.971(16878)	non tumor-specific	nAS	yes
OBSCN_LS153	chr1:228377712|228377931:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000422127.5;ENST00000636875.1;ENST00000636476.1	17.365	4.041	12.852	0.575(5509)	0.58(407)	0.937(16285)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_NDUFB2_LS0027	chr7:140697516|140702866:+	NDUFB2	NADH:ubiquinone oxidoreductase subunit B2	protein coding gene	no	.	4.688	1.998	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_HIBADH_LS0017	chr7:27538628|27627223:+	HIBADH	3-hydroxyisobutyrate dehydrogenase	protein coding gene	no	.	5.148	0.689	0.000	0.022(208)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TBC1D5_LS0141	chr3:18013774|18041449:+	TBC1D5	TBC1 domain family member 5	protein coding gene	no	.	2.164	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF675_LS0055	chr19:23654706|23658029:-	ZNF675	zinc finger protein 675	protein coding gene	no	.	0.891	0.119	0.000	0.011(109)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
FRS2_LS009	chr12:69470530|69562180:+	FRS2	fibroblast growth factor receptor substrate 2	protein coding gene	no	ENST00000550389.5	0.042	0.012	0.638	0.177(1692)	0.251(176)	0.015(259)	non tumor-specific	exon_skip	yes
ASB5_LS003	chr4:176221289|176221450:-	ASB5	ankyrin repeat and SOCS box containing 5	protein coding gene	no	ENST00000296525.7;ENST00000512254.1	6.438	6.888	2.148	0.117(1119)	0.268(188)	0.423(7351)	non tumor-specific	exon_skip	yes
PRPF3_LS005	chr1:150327652|150328320:+	PRPF3	pre-mRNA processing factor 3	protein coding gene	no	ENST00000496202.5	2.696	1.133	10.421	0.899(8612)	0.87(611)	0.969(16851)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CIR1_LS0015	chr2:174387779|174395552:-	CIR1	corepressor interacting with RBPJ, CIR1	protein coding gene	no	.	4.846	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_BAZ2A_LS0088	chr12:56617532|56621090:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	.	1.385	0.411	0.000	0.022(211)	0.023(16)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CLEC4G_LS008	chr19:7731319|7732048:-	CLEC4G	C-type lectin domain family 4 member G	protein coding gene	no	.;.;.	1.073	0.505	0.000	0.002(21)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
THOC2_LS054	chrX:123671761|123686548:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000433883.1	16.609	8.966	10.454	0.875(8383)	0.944(663)	0.956(16621)	non tumor-specific	exon_skip	yes
AC093581.1_LS002	chr1:216072964|216086722:+	AC093581.1	-	lncRNA gene	no	ENST00000445619.5	0.116	0.000	0.677	0.003(25)	0(0)	0.001(12)	non tumor-specific	nAS	yes
IPO13_LS022	chr1:43966782|43966930:+	IPO13	importin 13	protein coding gene	no	ENST00000372343.7;ENST00000372339.3	89.969	53.425	57.172	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CSF1_LS0023	chr1:109923544|109929560:-	CSF1	colony stimulating factor 1	protein coding gene	yes	.	1.303	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
HTRA3_LS009	chr4:8304279|8305971:+	HTRA3	HtrA serine peptidase 3	protein coding gene	yes	ENST00000307358.6	53.867	47.781	33.703	0.915(8766)	0.98(688)	0.933(16224)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NEK1_LS017	chr4:169507792|169508248:-	NEK1	NIMA related kinase 1	protein coding gene	no	ENST00000439128.6;ENST00000511633.5;ENST00000510533.5;ENST00000507142.5;ENST00000512193.5	7.875	6.502	7.832	0.807(7736)	0.93(653)	0.948(16484)	non tumor-specific	nAS	yes
SLC13A4_LS014	chr7:135702881|135705596:-	SLC13A4	solute carrier family 13 member 4	protein coding gene	no	ENST00000354042.8;ENST00000354042.8	1.321	0.757	0.778	0.029(281)	0.023(16)	0.142(2466)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PRDM15_LS014	chr21:41822037|41825960:-	PRDM15	PR/SET domain 15	protein coding gene	yes	ENST00000491486.5	0.145	0.075	0.759	0.416(3981)	0.343(241)	0.291(5052)	non tumor-specific	exon_skip	yes
UN_SPDYE2B_UP_LS0017	chr7:102538226|102637295:+	SPDYE2B	speedy/RINGO cell cycle regulator family member E2B	protein coding gene	no	.	6.420	0.047	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MTMR1_LS0032	chrX:150759464|150760383:+	MTMR1	myotubularin related protein 1	protein coding gene	no	.	2.526	0.582	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
ETF1_LS011	chr5:138518867|138529555:-	ETF1	eukaryotic translation termination factor 1	protein coding gene	no	ENST00000507939.5;ENST00000514005.1	0.208	0.174	2.243	0.624(5983)	0.768(539)	0.796(13834)	non tumor-specific	exon_skip	yes
UN_TTC21A_LS0011	chr3:39131095|39131606:+	TTC21A	tetratricopeptide repeat domain 21A	protein coding gene	no	.	1.373	0.218	0.000	0.039(377)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
UN_SDHB_LS0003	chr1:17024074|17027760:-	SDHB	succinate dehydrogenase complex iron sulfur subunit B	protein coding gene	yes	.	50.455	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC005920.3_UP_LS0018	chr17:50917399|50918047:+	AC005920.3	-	lncRNA gene	no	.	3.103	0.406	0.000	0.004(38)	0.009(6)	0(0)	non tumor-specific	nAS	no
ADH1C_LS011	chr4:99347846|99352658:-	ADH1C	alcohol dehydrogenase 1C (class I), gamma polypeptide	protein coding gene	no	ENST00000515683.5;ENST00000505942.2	9.657	64.650	5.139	0.452(4329)	0.944(663)	0.693(12052)	non tumor-specific	nAS	yes
UN_C3orf67_LS0011	chr3:58811798|58815602:-	C3orf67	CFAP20 domain containing	protein coding gene	no	.	0.473	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
COL14A1_LS015	chr8:120207094|120208232:+	COL14A1	collagen type XIV alpha 1 chain	protein coding gene	no	ENST00000498051.6;ENST00000537875.2;ENST00000309791.8;ENST00000297848.7;ENST00000432943.6;ENST00000523142.5;ENST00000434620.5	12.903	18.992	8.664	0.692(6634)	0.947(665)	0.801(13916)	non tumor-specific	nAS	yes
TOR1AIP2_LS006	chr1:179865854|179868808:-	TOR1AIP2	torsin 1A interacting protein 2	protein coding gene	no	.;.	2.054	1.167	0.000	0.357(3421)	0.359(252)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ADAM18_LS019	chr8:39663890|39667998:+	ADAM18	ADAM metallopeptidase domain 18	protein coding gene	no	ENST00000265707.9;ENST00000379866.5;ENST00000520087.5	14.020	0.000	0.687	0(3)	0(0)	0.003(53)	non tumor-specific	nAS	yes
CCDC136_LS032	chr7:128807545|128817758:+	CCDC136	coiled-coil domain containing 136	protein coding gene	yes	ENST00000487361.5;ENST00000487361.5	0.125	0.504	8.411	0.086(824)	0.03(21)	0.177(3078)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_CDK5_LS0005	chr7:151054463|151055027:-	CDK5	cyclin dependent kinase 5	protein coding gene	no	.	8.818	0.250	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_OSMR_LS0010	chr5:38882948|38883827:+	OSMR	oncostatin M receptor	protein coding gene	no	.	0.655	0.063	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
RTTN_LS033	chr18:70092804|70109498:-	RTTN	rotatin	protein coding gene	no	ENST00000640769.1;ENST00000583043.5;ENST00000255674.11;ENST00000579986.6;ENST00000639128.1;ENST00000581161.5;ENST00000640931.1;ENST00000638251.1;ENST00000640408.1;ENST00000581709.1;ENST00000640376.1	4.733	2.183	4.334	0.702(6727)	0.798(560)	0.932(16205)	non tumor-specific	nAS	yes
SEC16A_LS032	chr9:136455793|136456053:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000431893.3;ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000431893.3	44.132	30.774	29.931	0.987(9457)	0.994(698)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MYO1D_LS0120	chr17:32831382|32842588:+	MYO1D	myosin ID	protein coding gene	no	.	3.477	0.626	0.000	0.01(99)	0.016(11)	0(0)	non tumor-specific	nAS	no
LTBP4_LS044	chr19:40617225|40619347:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	ENST00000204005.13;ENST00000308370.11;ENST00000396819.7;ENST00000243562.13;ENST00000612121.4;ENST00000610893.4;ENST00000612845.4;ENST00000622565.4;ENST00000618486.4;ENST00000622107.4;ENST00000622457.1	20.567	47.815	139.723	0.987(9455)	0.997(700)	0.978(17005)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SEPT4-AS1_LS004	chr17:58544671|58556809:+	SEPT4-AS1	SEPTIN4 antisense RNA 1	lncRNA gene	no	ENST00000580589.5;ENST00000578022.1	0.929	0.522	1.476	0.372(3562)	0.447(314)	0.612(10631)	non tumor-specific	nAS	yes
HEXB_LS005	chr5:74696739|74696996:+	HEXB	hexosaminidase subunit beta	protein coding gene	no	ENST00000511181.5;ENST00000261416.11;ENST00000513079.5;ENST00000510820.1	216.775	151.174	70.082	0.994(9524)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_ANKRD36B_LS0012	chr2:97532381|97536300:-	ANKRD36B	ankyrin repeat domain 36B	protein coding gene	no	.	2.872	0.543	0.000	0.06(574)	0.044(31)	0(0)	non tumor-specific	nAS	no
CFAP46_LS060	chr10:132938753|132940996:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	ENST00000368586.9;ENST00000368585.3;ENST00000475340.1	3.532	1.642	1.514	0.348(3335)	0.506(355)	0.483(8400)	non tumor-specific	nAS	yes
COG4_LS032	chr16:70516040|70517626:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	ENST00000564415.5	0.953	0.747	2.882	0.56(5364)	0.59(414)	0.885(15380)	non tumor-specific	exon_skip	yes
AL365258.1_LS001	chr1:197757401|197761802:+	AL365258.1	-	lncRNA gene	no	ENST00000440885.1	7.007	0.000	0.641	0.001(5)	0(0)	0(3)	non tumor-specific	nAS	yes
NAALADL1_LS023	chr11:65048048|65048152:-	NAALADL1	N-acetylated alpha-linked acidic dipeptidase like 1	protein coding gene	no	ENST00000358658.7;ENST00000529274.5;ENST00000528977.5;ENST00000340252.8;ENST00000355721.7;ENST00000356632.7;ENST00000530995.5;ENST00000533340.5;ENST00000524445.1;ENST00000532432.1	0.274	1.254	1.378	0.512(4903)	0.671(471)	0.594(10318)	non tumor-specific	exon_skip	yes
UN_ST8SIA2_LS0011	chr15:92465685|92466335:+	ST8SIA2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein coding gene	no	.	2.341	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_IGHG2_LS0016	chr14:105643343|105643419:-	IGHG2	immunoglobulin heavy constant gamma 2 (G2m marker)	no	no	.	2834.173	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZKSCAN7_LS0012	chr3:44571085|44577305:+	ZKSCAN7	zinc finger with KRAB and SCAN domains 7	protein coding gene	no	.	1.573	0.574	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_VPS33B_LS0014	chr15:91008976|91009785:-	VPS33B	VPS33B late endosome and lysosome associated	protein coding gene	no	.	2.878	0.057	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CTSB_LS0271	chr8:11850980|11852476:-	CTSB	cathepsin B	protein coding gene	no	.	15.749	29.885	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CTNND1_LS0179	chr11:57818189|57818367:-	CTNND1	catenin delta 1	protein coding gene	yes	.	2.371	0.549	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PLEKHF2_UP_LS0007	chr8:95130342|95130465:+	PLEKHF2	pleckstrin homology and FYVE domain containing 2	protein coding gene	no	.	2.373	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4E_LS015	chr4:98895563|98901876:-	EIF4E	eukaryotic translation initiation factor 4E	protein coding gene	yes	ENST00000504472.1	0.033	0.027	0.656	0.202(1936)	0.188(132)	0.147(2547)	non tumor-specific	alt_3prime;exon_skip	yes
PPP4C_LS011	chr16:30082534|30083394:+	PPP4C	protein phosphatase 4 catalytic subunit	protein coding gene	no	ENST00000562664.5;ENST00000562222.5;ENST00000562664.5;ENST00000562222.5	2.008	1.737	3.300	0.985(9441)	0.983(690)	0.93(16164)	non tumor-specific	alt_3prime;exon_skip	yes
MFSD9_LS006	chr2:102726974|102731025:-	MFSD9	major facilitator superfamily domain containing 9	protein coding gene	no	ENST00000258436.9;ENST00000438943.5;ENST00000437075.6;ENST00000411991.5;ENST00000428085.1;ENST00000421966.1	10.004	7.399	4.555	0.956(9156)	0.966(678)	0.936(16262)	non tumor-specific	exon_skip	yes
C2orf92_LS032	chr2:97671499|97674456:+	C2orf92	chromosome 2 open reading frame 92	protein coding gene	no	ENST00000451384.6;ENST00000629840.2;ENST00000600331.5;ENST00000596069.5;ENST00000627284.2;ENST00000595588.5;ENST00000601509.5;ENST00000628992.2;ENST00000599959.5	0.315	0.126	0.806	0.167(1604)	0.172(121)	0.306(5312)	non tumor-specific	nAS	yes
AKAP17A_LS001	chrX:1591769|1593444:+	AKAP17A	A-kinase anchoring protein 17A	protein coding gene	no	ENST00000313871.8;ENST00000474361.6;ENST00000381261.8	4.531	3.322	24.347	0.961(9205)	0.986(692)	0.978(16999)	non tumor-specific	nAS	yes
UN_AC244517.11_LS0086	chr5:141174845|141225516:-	AC244517.11	-	lncRNA gene	no	.	1.203	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CIITA_LS0081	chr16:10929559|10933900:-	CIITA	class II major histocompatibility complex transactivator	protein coding gene	no	.	3.965	0.318	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_AC098934.1_LS0005	chr1:202855772|202857647:-	AC098934.1	-	pseudogene	no	.	3.656	0.295	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
DAXX_LS016	chr6:33322008|33322862:-	DAXX	death domain associated protein	protein coding gene	yes	ENST00000446403.1	0.089	0.355	0.608	0.123(1181)	0.077(54)	0.018(315)	non tumor-specific	alt_3prime;exon_skip	yes
MDM1_LS016	chr12:68316253|68321525:-	MDM1	Mdm1 nuclear protein	protein coding gene	no	.;.	1.342	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RMDN1_LS002	chr8:86468423|86474820:-	RMDN1	regulator of microtubule dynamics 1	protein coding gene	no	.;.	2.322	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COL23A1_LS0027	chr5:178256928|178257152:-	COL23A1	collagen type XXIII alpha 1 chain	protein coding gene	no	.	3.122	0.429	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CHIAP2_LS009	chr1:111283409|111284065:+	CHIAP2	chitinase, acidic pseudogene 2	pseudogene	no	ENST00000369743.8;ENST00000456752.6;ENST00000532686.5	9.376	4.032	1.594	0.015(146)	0.15(105)	0.05(865)	non tumor-specific	nAS	yes
UN_AC140847.2_LS0008	chr12:34202582|34208444:-	AC140847.2	-	lncRNA gene	no	.	6.573	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EHMT2_LS0038	chr6:31883014|31883722:+	EHMT2	euchromatic histone lysine methyltransferase 2	protein coding gene	no	.	2.133	0.191	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SUMO2P8_UP_LS0002	chr6:108782331|108794919:-	SUMO2P8	SUMO2 pseudogene 8	pseudogene	no	.	3.560	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPS12_LS0013	chr6:132816530|132816972:-	RPS12	ribosomal protein S12	protein coding gene	no	.	6.257	0.464	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM20C_LS008	chr7:195732|208898:+	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	ENST00000313766.5;ENST00000477004.1;ENST00000313766.5;ENST00000477004.1	79.638	58.355	64.505	0.984(9425)	0.997(700)	0.974(16923)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MIR4435-2HG_LS0041	chr2:111286271|111289039:+	MIR4435-2HG	MIR4435-2 host gene	lncRNA gene	no	.	5.852	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1211_LS011	chr4:56272492|56307535:+	KIAA1211	capping protein inhibiting regulator of actin dynamics	protein coding gene	no	.;.	3.269	1.327	0.000	0.183(1758)	0.081(57)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SLC22A16_LS011	chr6:110446990|110456538:-	SLC22A16	solute carrier family 22 member 16	protein coding gene	no	ENST00000451557.5;ENST00000368919.7;ENST00000330550.8;ENST00000437378.5;ENST00000424139.1	2.666	0.496	0.830	0.066(635)	0.031(22)	0.11(1905)	non tumor-specific	alt_5prime;exon_skip	yes
HGS_LS008	chr17:81684445|81685605:+	HGS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein coding gene	no	ENST00000577012.1;ENST00000577012.1;ENST00000577012.1	0.117	0.087	0.755	0.132(1265)	0.131(92)	0.124(2156)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SPNS3_LS0026	chr17:4477856|4478572:+	SPNS3	sphingolipid transporter 3 (putative)	protein coding gene	no	.	1.465	1.456	0.000	0.003(32)	0.074(52)	0(0)	non tumor-specific	nAS	no
UN_LINC00609_LS0013	chr14:36152118|36153804:-	LINC00609	long intergenic non-protein coding RNA 609	lncRNA gene	no	.	0.601	1.420	0.000	0.004(43)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_AR_LS0013	chrX:67643407|67685941:+	AR	androgen receptor	protein coding gene	yes	.	2.096	0.399	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SUMF2_LS018	chr7:56074639|56076834:+	SUMF2	sulfatase modifying factor 2	protein coding gene	no	ENST00000447501.5	0.152	0.189	1.099	0.414(3962)	0.506(355)	0.619(10756)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_GGCX_LS0015	chr2:85552555|85552939:-	GGCX	gamma-glutamyl carboxylase	protein coding gene	no	.	16.391	0.114	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RASAL1_LS0032	chr12:113128173|113130885:-	RASAL1	RAS protein activator like 1	protein coding gene	yes	.	2.983	0.975	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RICTOR_LS043	chr5:38996882|39002535:-	RICTOR	RPTOR independent companion of MTOR complex 2	protein coding gene	no	ENST00000357387.7;ENST00000511516.5;ENST00000296782.9;ENST00000510711.5;ENST00000513566.1;ENST00000514735.1	6.129	3.448	4.351	0.7(6711)	0.852(598)	0.913(15876)	non tumor-specific	exon_skip	yes
LPCAT1_LS017	chr5:1477486|1479621:-	LPCAT1	lysophosphatidylcholine acyltransferase 1	protein coding gene	no	ENST00000475622.5;ENST00000283415.3	74.259	60.177	22.494	0.975(9342)	0.984(691)	0.977(16990)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CDS2_LS0018	chr20:5183178|5184858:+	CDS2	CDP-diacylglycerol synthase 2	protein coding gene	no	.	3.815	0.285	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ABCE1_LS006	chr4:145105690|145108015:+	ABCE1	ATP binding cassette subfamily E member 1	protein coding gene	no	ENST00000296577.8;ENST00000502586.5;ENST00000507193.5	43.096	23.270	21.243	0.97(9297)	0.99(695)	0.973(16919)	non tumor-specific	nAS	yes
SEC23IP_LS022	chr10:119932318|119933005:+	SEC23IP	SEC23 interacting protein	protein coding gene	no	ENST00000369075.7;ENST00000475542.1	45.098	27.966	22.026	0.987(9458)	0.996(699)	0.978(16992)	non tumor-specific	alt_3prime	yes
PRMT2_LS008	chr21:46636990|46643535:+	PRMT2	protein arginine methyltransferase 2	protein coding gene	no	ENST00000355680.7;ENST00000451211.6;ENST00000458387.6;ENST00000397638.6;ENST00000291705.11;ENST00000397637.5;ENST00000334494.8;ENST00000397628.5;ENST00000440086.5	86.759	55.367	75.311	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
ARSB_LS008	chr5:78955502|78964416:-	ARSB	arylsulfatase B	protein coding gene	no	ENST00000264914.9;ENST00000396151.7;ENST00000565165.2	14.704	9.102	7.132	0.951(9115)	0.977(686)	0.963(16734)	non tumor-specific	alt_3prime;exon_skip	yes
SNHG14_LS038	chr15:25080079|25081091:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000640631.1	2.002	0.949	2.628	0.105(1005)	0.111(78)	0.775(13471)	non tumor-specific	nAS	yes
UN_AC006453.1_UP_LS0312	chr2:90173245|90235202:-	AC006453.1	-	pseudogene	no	.	8.996	4.201	0.000	0.076(728)	0.108(76)	0(0)	non tumor-specific	nAS	no
AC099542.1_LS005	chr3:81252245|81288079:-	AC099542.1	-	lncRNA gene	no	ENST00000464131.1	2.728	0.000	0.669	0.002(16)	0(0)	0.103(1796)	non tumor-specific	nAS	yes
GLOD4_LS005	chr17:769955|770421:-	GLOD4	glyoxalase domain containing 4	protein coding gene	no	.;.	5.208	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FP671120.3_UP_LS0459	chr21:8218676|8259525:-	FP671120.3	-	lncRNA gene	no	.	216.530	7.412	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF157_LS026	chr17:76212482|76240153:-	RNF157	ring finger protein 157	protein coding gene	no	ENST00000269391.10;ENST00000647930.1;ENST00000319945.10;ENST00000592271.1	1.554	1.690	3.089	0.74(7087)	0.795(558)	0.772(13425)	non tumor-specific	exon_skip	yes
UN_PREP_LS0003	chr6:105281851|105282451:-	PREP	prolyl endopeptidase	protein coding gene	no	.	7.032	0.776	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_E2F3_LS0037	chr6:20403908|20479846:+	E2F3	E2F transcription factor 3	protein coding gene	yes	.	0.788	0.060	0.000	0.005(49)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_AL132642.2_UP_LS0006	chr14:93810783|93818979:+	AL132642.2	-	lncRNA gene	no	.	2.323	2.042	0.000	0.01(98)	0.021(15)	0(0)	non tumor-specific	nAS	no
POSTN_LS035	chr13:37584103|37584716:-	POSTN	periostin	protein coding gene	no	ENST00000541179.5;ENST00000379749.8;ENST00000541481.5;ENST00000379747.8;ENST00000379743.8;ENST00000379742.4	109.457	66.759	33.407	0.861(8251)	0.925(649)	0.816(14186)	non tumor-specific	exon_skip	yes
ZNF839_LS016	chr14:102337726|102338816:+	ZNF839	zinc finger protein 839	protein coding gene	no	ENST00000420933.2	0.018	0.033	0.757	0.268(2563)	0.222(156)	0.242(4211)	non tumor-specific	nAS	yes
UN_WASH3P_LS0013	chr15:101966223|101971809:+	WASH3P	WASP family homolog 3, pseudogene	pseudogene	no	.	10.586	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
GPM6B_LS016	chrX:13785808|13889452:-	GPM6B	glycoprotein M6B	protein coding gene	yes	ENST00000468080.1	0.182	0.005	0.914	0.185(1770)	0.209(147)	0.061(1061)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SEPT9_LS0100	chr17:77496387|77497315:+	SEPT9	septin 9	protein coding gene	yes	.	2.586	0.998	0.000	0.017(159)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_ARL6IP5_LS0005	chr3:69102056|69104447:+	ARL6IP5	ADP ribosylation factor like GTPase 6 interacting protein 5	protein coding gene	yes	.	33.229	3.612	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
AC116616.1_LS001	chr4:174354950|174370558:-	AC116616.1	-	lncRNA gene	no	ENST00000508815.1	0.172	0.000	0.696	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_MGAM_LS0003	chr7:141931823|141935814:-	MGAM	maltase-glucoamylase	protein coding gene	no	.	1.088	0.285	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
NDST3_LS004	chr4:118105105|118114806:+	NDST3	N-deacetylase and N-sulfotransferase 3	protein coding gene	no	ENST00000296499.5	4.281	0.724	2.172	0.038(362)	0.026(18)	0.206(3581)	non tumor-specific	nAS	yes
ARHGAP44_LS029	chr17:12987152|12990032:+	ARHGAP44	Rho GTPase activating protein 44	protein coding gene	no	ENST00000580768.5;ENST00000262444.13	6.760	6.704	6.133	0.573(5493)	0.85(597)	0.895(15557)	non tumor-specific	exon_skip	yes
UN_KANK2_LS0036	chr19:11178720|11179724:-	KANK2	KN motif and ankyrin repeat domains 2	protein coding gene	no	.	1.668	0.170	0.000	0.008(74)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TYW1_LS009	chr7:67018143|67024900:+	TYW1	tRNA-yW synthesizing protein 1 homolog	protein coding gene	no	ENST00000359626.9;ENST00000615572.4;ENST00000361660.8	26.716	13.893	12.541	0.967(9262)	0.983(690)	0.974(16936)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL669831.3_LS0609	chr1:633303|633983:-	AL669831.3	-	pseudogene	no	.	38.240	9.049	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AK7_LS0005	chr14:96446607|96451421:+	AK7	adenylate kinase 7	protein coding gene	no	.	1.873	1.443	0.000	0.007(65)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TESMIN_LS0011	chr11:68737557|68738700:-	TESMIN	testis expressed metallothionein like protein	protein coding gene	no	.	0.906	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PTPN3_LS029	chr9:109448855|109454496:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	ENST00000262539.7;ENST00000374541.3;ENST00000262539.7;ENST00000374541.3	14.319	17.143	3.320	0.774(7417)	0.927(651)	0.688(11952)	non tumor-specific	alt_3prime;exon_skip	yes
MROH2A_LS017	chr2:233803488|233804051:+	MROH2A	maestro heat like repeat family member 2A	protein coding gene	no	ENST00000610772.4;ENST00000389758.3	4.028	1.705	1.285	0.02(187)	0.047(33)	0.054(934)	non tumor-specific	exon_skip	yes
TTC23_LS039	chr15:99235078|99241365:-	TTC23	tetratricopeptide repeat domain 23	protein coding gene	no	ENST00000560235.1	0.125	0.074	0.652	0.165(1581)	0.249(175)	0.013(224)	non tumor-specific	nAS	yes
P2RX5-TAX1BP3_LS003	chr17:3664798|3669058:-	P2RX5-TAX1BP3	P2RX5-TAX1BP3 readthrough (NMD candidate)	protein coding gene	no	ENST00000550383.1	0.183	0.274	0.871	0.237(2274)	0.152(107)	0.242(4210)	non tumor-specific	nAS	yes
DGAT2L6_LS002	chrX:70199381|70199812:+	DGAT2L6	diacylglycerol O-acyltransferase 2 like 6	protein coding gene	no	ENST00000333026.3	2.157	51.733	1.696	0.003(25)	0.003(2)	0.037(648)	non tumor-specific	nAS	yes
UN_RASSF3_LS0003	chr12:64580827|64584038:-	RASSF3	Ras association domain family member 3	protein coding gene	yes	.	2.478	0.430	0.000	0.016(158)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL359922.1_LS0062	chr9:21890838|21931008:+	AL359922.1	-	protein coding gene	no	.	0.962	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
HS6ST2_LS003	chrX:132669199|132708462:-	HS6ST2	heparan sulfate 6-O-sulfotransferase 2	protein coding gene	no	ENST00000521489.5;ENST00000370833.6;ENST00000640529.1	1.035	0.720	2.015	0.1(960)	0.145(102)	0.123(2132)	non tumor-specific	exon_skip	yes
NTF4_LS006	chr19:49063862|49064688:-	NTF4	neurotrophin 4	protein coding gene	no	ENST00000594938.1	0.630	0.501	1.182	0.272(2602)	0.419(294)	0.131(2277)	non tumor-specific	nAS	yes
MMP25-AS1_LS004	chr16:3052098|3054940:-	MMP25-AS1	MMP25 antisense RNA 1	lncRNA gene	no	ENST00000576250.5	0.031	0.023	0.854	0.062(591)	0.027(19)	0.043(748)	non tumor-specific	nAS	yes
ATP6V1A_LS020	chr3:113803677|113805354:+	ATP6V1A	ATPase H+ transporting V1 subunit A	protein coding gene	no	ENST00000273398.7;ENST00000470455.5;ENST00000461496.1	89.202	87.062	19.355	0.987(9456)	0.991(696)	0.978(16995)	non tumor-specific	exon_skip	yes
ZNF525_LS010	chr19:53375896|53391868:+	ZNF525	zinc finger protein 525	protein coding gene	no	ENST00000593918.1	0.598	0.404	0.837	0.485(4644)	0.561(394)	0.409(7106)	non tumor-specific	nAS	yes
PIK3C3_LS026	chr18:42038850|42040677:+	PIK3C3	phosphatidylinositol 3-kinase catalytic subunit type 3	protein coding gene	no	ENST00000262039.8;ENST00000639914.1;ENST00000398870.7;ENST00000593098.5;ENST00000597477.5;ENST00000589056.5;ENST00000587402.2	30.347	20.256	30.478	0.991(9497)	0.996(699)	0.979(17018)	non tumor-specific	exon_skip	yes
KCNIP3_LS014	chr2:95381703|95382377:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	ENST00000295225.9;ENST00000377181.2;ENST00000360990.7;ENST00000468529.1	14.222	9.063	7.030	0.638(6112)	0.769(540)	0.894(15548)	non tumor-specific	alt_3prime;exon_skip	yes
SLC1A2_LS027	chr11:35317516|35404319:-	SLC1A2	solute carrier family 1 member 2	protein coding gene	no	ENST00000646585.1	1.954	0.659	0.000	0.008(79)	0.014(10)	0(0)	non tumor-specific	exon_skip	yes
PNPLA2_LS008	chr11:819905|821741:+	PNPLA2	patatin like phospholipase domain containing 2	protein coding gene	no	.;.	7.498	0.948	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PLXNA2_LS020	chr1:208054538|208060686:-	PLXNA2	plexin A2	protein coding gene	no	ENST00000367033.3	15.221	15.147	11.408	0.876(8395)	0.944(663)	0.949(16488)	non tumor-specific	alt_5prime	yes
DHX16_LS016	chr6:30663021|30664801:-	DHX16	DEAH-box helicase 16	protein coding gene	no	ENST00000376442.7	36.360	19.830	27.093	0.984(9430)	0.996(699)	0.979(17016)	non tumor-specific	nAS	yes
UBA7_LS028	chr3:49812016|49812109:-	UBA7	ubiquitin like modifier activating enzyme 7	protein coding gene	no	ENST00000333486.3;ENST00000478688.1	32.563	25.807	42.648	0.985(9442)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01481_LS003	chr12:70225032|70225211:-	LINC01481	progenitor renewal associated non-coding RNA	lncRNA gene	no	ENST00000550216.1	0.528	0.049	0.640	0.004(38)	0.006(4)	0.04(698)	non tumor-specific	nAS	yes
UN_LINC00963_LS0026	chr9:129498511|129502397:+	LINC00963	long intergenic non-protein coding RNA 963	lncRNA gene	no	.	3.817	0.272	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	nAS	no
CALU_LS010	chr7:128748804|128754529:+	CALU	calumenin	protein coding gene	no	ENST00000542996.6;ENST00000449187.6;ENST00000542996.6;ENST00000449187.6	8.218	5.315	14.619	0.972(9309)	0.99(695)	0.961(16700)	non tumor-specific	alt_5prime;exon_skip	yes
PRAMEF2_LS002	chr1:12859296|12859693:+	PRAMEF2	PRAME family member 2	protein coding gene	no	ENST00000240189.2	2.741	0.045	0.665	0.004(43)	0.001(1)	0.002(37)	non tumor-specific	nAS	yes
NPY4R_LS002	chr10:46462694|46465678:-	NPY4R	neuropeptide Y receptor Y4	protein coding gene	no	ENST00000612632.3	0.264	0.146	0.825	0.131(1255)	0.192(135)	0.025(435)	non tumor-specific	nAS	yes
AP003108.2_LS010	chr11:61468714|61481782:+	AP003108.2	-	protein coding gene	no	ENST00000541135.5	0.120	0.039	0.745	0.052(502)	0.066(46)	0.268(4661)	non tumor-specific	nAS	yes
CFAP43_LS011	chr10:104145564|104146263:-	CFAP43	cilia and flagella associated protein 43	protein coding gene	no	ENST00000357060.7;ENST00000457071.5	2.490	2.549	1.586	0.235(2248)	0.48(337)	0.411(7139)	non tumor-specific	exon_skip;intron_retention	yes
TFG_LS010	chr3:100720058|100728712:+	TFG	trafficking from ER to golgi regulator	protein coding gene	yes	ENST00000620299.4;ENST00000418917.6;ENST00000490574.5;ENST00000240851.8;ENST00000479672.5;ENST00000476228.5;ENST00000463568.5;ENST00000487505.5;ENST00000615993.1	148.957	79.548	86.406	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_NANOS3_LS0005	chr19:13865437|13880442:+	NANOS3	nanos C2HC-type zinc finger 3	protein coding gene	no	.	4.021	2.549	0.000	0.409(3921)	0.316(222)	0(0)	non tumor-specific	exon_skip	no
AL049650.1_LS002	chr20:2467758|2492699:-	AL049650.1	-	protein coding gene	no	ENST00000461548.1	0.364	0.314	2.477	0.861(8246)	0.811(569)	0.877(15249)	non tumor-specific	nAS	yes
UN_NRBF2_LS0013	chr10:63150356|63152150:+	NRBF2	nuclear receptor binding factor 2	protein coding gene	no	.	3.455	1.194	0.000	0.065(619)	0.048(34)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
EHMT1_LS064	chr9:137814508|137815323:+	EHMT1	euchromatic histone lysine methyltransferase 1	protein coding gene	no	ENST00000637407.1	2.308	0.000	0.699	0(2)	0(0)	0.163(2825)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NUP54_LS021	chr4:76144473|76145983:-	NUP54	nucleoporin 54	protein coding gene	no	ENST00000508583.5;ENST00000513352.1	0.321	0.053	0.624	0.029(276)	0.053(37)	0.044(771)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_HIST3H2BB_UP_LS0003	chr1:228407478|228412831:+	HIST3H2BB	H2B.U histone 1	protein coding gene	no	.	3.007	0.096	0.000	0.025(239)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL354896.1_UP_LS0014	chr13:88060802|88065110:+	AL354896.1	-	lncRNA gene	no	.	5.542	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
KCTD15_LS022	chr19:33811552|33812790:+	KCTD15	potassium channel tetramerization domain containing 15	protein coding gene	no	ENST00000589786.5;ENST00000588881.5;ENST00000430256.3;ENST00000589786.5;ENST00000588881.5;ENST00000430256.3	20.556	11.279	23.599	0.907(8692)	0.947(665)	0.961(16705)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MPHOSPH10_LS010	chr2:71148106|71149223:+	MPHOSPH10	M-phase phosphoprotein 10	protein coding gene	no	ENST00000244230.6;ENST00000476969.1	128.299	58.970	69.841	0.997(9548)	0.997(700)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_DDC_LS0023	chr7:50537979|50539396:-	DDC	dopa decarboxylase	protein coding gene	no	.	7.760	5.066	0.000	0.017(166)	0.064(45)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
EDDM13_LS001	chr19:56272919|56276092:+	EDDM13	epididymal protein 13	protein coding gene	no	ENST00000649256.1	3.099	0.000	1.165	0(1)	0(0)	0.015(269)	non tumor-specific	nAS	yes
SLC2A6_LS021	chr9:133478416|133478968:-	SLC2A6	solute carrier family 2 member 6	protein coding gene	no	ENST00000371897.8;ENST00000371899.8;ENST00000432868.1	5.063	3.375	3.947	0.82(7857)	0.746(524)	0.912(15855)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CECR2_LS008	chr22:17500735|17503082:+	CECR2	CECR2 histone acetyl-lysine reader	protein coding gene	no	ENST00000400585.6;ENST00000342247.9;ENST00000262608.12;ENST00000612582.1	4.810	1.596	3.164	0.27(2583)	0.321(225)	0.699(12153)	non tumor-specific	exon_skip	yes
TMEM68_LS018	chr8:55763028|55763422:-	TMEM68	transmembrane protein 68	protein coding gene	no	ENST00000523180.5	0.599	0.114	0.745	0.167(1604)	0.373(262)	0.157(2736)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PTPRS_LS0094	chr19:5336774|5337248:+	PTPRS	protein tyrosine phosphatase receptor type S	protein coding gene	no	.	3.028	0.286	0.000	0.022(213)	0.006(4)	0(0)	non tumor-specific	nAS	no
TRIM40_LS007	chr6:30146089|30147072:+	TRIM40	tripartite motif containing 40	protein coding gene	no	ENST00000307859.4	0.539	0.231	0.714	0.01(92)	0.038(27)	0.004(66)	non tumor-specific	alt_3prime	yes
UN_AC015689.1_UP_LS0005	chr11:4176012|4180632:+	AC015689.1	-	lncRNA gene	no	.	1.250	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PISD_LS0043	chr22:31632291|31648101:-	PISD	SFI1 centrin binding protein	protein coding gene	no	.	0.448	0.457	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
MGAT4C_LS023	chr12:86028204|86049674:-	MGAT4C	MGAT4 family member C	protein coding gene	no	ENST00000552808.6;ENST00000550365.1	0.639	0.069	0.787	0.055(530)	0.056(39)	0.047(824)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PVR_LS008	chr19:44654017|44661292:+	PVR	PVR cell adhesion molecule	protein coding gene	no	ENST00000587785.1;ENST00000587785.1	0.426	0.232	1.394	0.726(6956)	0.764(536)	0.666(11585)	non tumor-specific	alt_3prime;exon_skip	yes
UN_P4HB_LS0017	chr17:81843301|81843623:-	P4HB	prolyl 4-hydroxylase subunit beta	protein coding gene	no	.	22.662	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FRMD4A_LS010	chr10:13654512|13656636:-	FRMD4A	FERM domain containing 4A	protein coding gene	no	ENST00000357447.6;ENST00000495956.2;ENST00000357447.6;ENST00000495956.2	12.663	11.112	18.145	0.958(9182)	0.99(695)	0.971(16884)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HPD_LS0024	chr12:121856603|121856744:-	HPD	4-hydroxyphenylpyruvate dioxygenase	protein coding gene	no	.	1.739	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ABHD6_LS014	chr3:58285453|58293586:+	ABHD6	abhydrolase domain containing 6, acylglycerol lipase	protein coding gene	no	.;.	4.879	3.916	0.000	0.116(1107)	0.181(127)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ZMIZ1_LS030	chr10:79304175|79305164:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	ENST00000334512.9;ENST00000446377.3	61.417	51.546	43.003	0.96(9201)	0.99(695)	0.978(17008)	non tumor-specific	nAS	yes
NDRG1_LS031	chr8:133262167|133264547:-	NDRG1	N-myc downstream regulated 1	protein coding gene	yes	ENST00000323851.11;ENST00000414097.6;ENST00000522476.5;ENST00000522377.5;ENST00000520230.5;ENST00000518010.5;ENST00000518480.5;ENST00000519228.5;ENST00000519580.5;ENST00000522890.5;ENST00000520943.5;ENST00000521544.5;ENST00000517745.1;ENST00000522738.1;ENST00000523892.5;ENST00000523931.1;ENST00000323851.11;ENST00000414097.6;ENST00000522476.5;ENST00000522377.5;ENST00000520230.5;ENST00000518010.5;ENST00000518480.5;ENST00000519228.5;ENST00000519580.5;ENST00000522890.5;ENST00000520943.5;ENST00000521544.5;ENST00000517745.1;ENST00000522738.1;ENST00000523892.5;ENST00000523931.1;ENST00000323851.11;ENST00000414097.6;ENST00000522476.5;ENST00000522377.5;ENST00000520230.5;ENST00000518010.5;ENST00000518480.5;ENST00000519228.5;ENST00000519580.5;ENST00000522890.5;ENST00000520943.5;ENST00000521544.5;ENST00000517745.1;ENST00000522738.1;ENST00000523892.5;ENST00000523931.1	315.267	260.723	204.105	0.993(9518)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMEM125_LS0032	chr1:43273085|43273157:-	TMEM125	transmembrane protein 125	protein coding gene	no	.	1.316	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CTDSPL2_LS013	chr15:44496458|44497027:+	CTDSPL2	CTD small phosphatase like 2	protein coding gene	no	ENST00000260327.8;ENST00000558966.5;ENST00000558373.5;ENST00000561189.1	22.265	12.974	6.518	0.925(8863)	0.974(684)	0.951(16523)	non tumor-specific	exon_skip	yes
MYH15_LS023	chr3:108456883|108459362:-	MYH15	myosin heavy chain 15	protein coding gene	no	ENST00000273353.3;ENST00000478998.5;ENST00000495753.2	1.565	0.268	1.012	0.054(521)	0.024(17)	0.215(3741)	non tumor-specific	nAS	yes
UN_BMS1P8_LS0014	chr16:33701412|33707182:-	BMS1P8	BMS1 pseudogene 8	pseudogene	no	.	1.205	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SETD7_LS009	chr4:139547049|139556098:-	SETD7	SET domain containing 7, histone lysine methyltransferase	protein coding gene	no	ENST00000506866.6;ENST00000274031.7;ENST00000404104.7	4.674	4.800	10.007	0.863(8264)	0.919(645)	0.957(16634)	non tumor-specific	exon_skip	yes
DMTF1_LS009	chr7:87152555|87164934:+	DMTF1	cyclin D binding myb like transcription factor 1	protein coding gene	yes	ENST00000547146.6;ENST00000430405.7	0.004	0.001	0.680	0.007(71)	0.006(4)	0.003(54)	non tumor-specific	nAS	yes
UN_MYO1B_LS0009	chr2:191250878|191276887:+	MYO1B	myosin IB	protein coding gene	no	.	0.530	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PINK1_LS0006	chr1:20634779|20645585:-	PINK1	PTEN induced kinase 1	protein coding gene	no	.	1.123	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS0824	chr16:173554|176929:+	RF00019	-	small non-coding RNA gene	no	.	2474.510	562.651	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC02262_LS001	chr4:117359809|117360564:-	LINC02262	long intergenic non-protein coding RNA 2262	lncRNA gene	no	ENST00000416680.1	1.917	0.000	0.727	0(3)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_HLA-DRB9_UP_LS0097	chr6:32520213|32555493:-	HLA-DRB9	major histocompatibility complex, class II, DR beta 9 (pseudogene)	pseudogene	no	.	38.831	4.351	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MAN1C1_LS0026	chr1:25771772|25775932:+	MAN1C1	mannosidase alpha class 1C member 1	protein coding gene	no	.	0.852	0.539	0.000	0.003(33)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
AKR1C2_LS061	chr10:5010653|5015837:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.;.	0.886	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_SERPINB5_UP_LS0004	chr18:63367859|63390797:+	SERPINB5	serpin family B member 5	protein coding gene	yes	.	1.337	0.139	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0291	chr14:106606171|106639175:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	19.272	12.053	0.000	0.397(3799)	0.444(312)	0(0)	non tumor-specific	nAS	no
TBC1D15_LS016	chr12:71873003|71884811:+	TBC1D15	TBC1 domain family member 15	protein coding gene	yes	ENST00000472611.6	0.122	0.081	0.973	0.628(6014)	0.709(498)	0.484(8406)	non tumor-specific	exon_skip	yes
WDR92_LS001	chr2:68123011|68125205:-	WDR92	WD repeat domain 92	protein coding gene	no	ENST00000492039.6	0.109	0.000	0.632	0(4)	0(0)	0.006(105)	non tumor-specific	nAS	yes
ICAM3_LS010	chr19:10335976|10338682:-	ICAM3	intercellular adhesion molecule 3	protein coding gene	no	ENST00000589900.5;ENST00000587992.1;ENST00000160262.9;ENST00000589261.5;ENST00000585439.1;ENST00000590569.1;ENST00000589249.1	22.879	8.204	2.941	0.909(8712)	0.954(670)	0.836(14537)	non tumor-specific	alt_5prime;exon_skip	yes
CCT5_LS005	chr5:10250893|10254145:+	CCT5	chaperonin containing TCP1 subunit 5	protein coding gene	no	ENST00000515676.5;ENST00000506600.1	0.070	0.647	0.788	0.857(8215)	0.868(609)	0.201(3489)	non tumor-specific	nAS	yes
CDCA5_LS008	chr11:65079187|65079353:-	CDCA5	cell division cycle associated 5	protein coding gene	no	ENST00000275517.7;ENST00000524733.5;ENST00000479032.6;ENST00000531401.5;ENST00000527430.1	19.516	3.138	2.082	0.949(9093)	0.796(559)	0.783(13613)	non tumor-specific	alt_3prime;intron_retention	yes
MSTO1_LS045	chr1:155613766|155614059:+	MSTO1	misato mitochondrial distribution and morphology regulator 1	protein coding gene	no	ENST00000490743.5;ENST00000245564.6;ENST00000494995.5;ENST00000475253.5;ENST00000466815.1	11.185	4.074	1.409	0.998(9560)	0.993(697)	0.708(12300)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC009226.1_LS0045	chr2:207528613|207528713:-	AC009226.1	-	lncRNA gene	no	.	1.176	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC26A3_LS002	chr7:107767644|107767766:-	SLC26A3	solute carrier family 26 member 3	protein coding gene	no	ENST00000379083.7;ENST00000340010.9	50.156	431.568	1.380	0.142(1363)	0.264(185)	0.301(5228)	non tumor-specific	alt_5prime	yes
RAB35_LS005	chr12:120099154|120099243:-	RAB35	RAB35, member RAS oncogene family	protein coding gene	no	ENST00000543364.1	0.238	0.105	0.725	0.116(1109)	0.101(71)	0.218(3784)	non tumor-specific	nAS	yes
UN_CELF2_LS0008	chr10:10940454|11165486:+	CELF2	CUGBP Elav-like family member 2	protein coding gene	no	.	1.452	0.712	0.000	0.002(15)	0.007(5)	0(0)	non tumor-specific	nAS	no
ANKRD33_LS006	chr12:51889482|51890584:+	ANKRD33	ankyrin repeat domain 33	protein coding gene	no	ENST00000301190.10;ENST00000549316.1	0.595	0.000	0.691	0.018(172)	0(0)	0.022(379)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_MRPL43_LS0010	chr10:100986572|100986681:-	MRPL43	mitochondrial ribosomal protein L43	protein coding gene	no	.	2.900	0.924	0.000	0.05(475)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC137056.1_LS0008	chr16:20446111|20446327:-	AC137056.1	-	lncRNA gene	no	.	1.129	1.112	0.000	0.001(11)	0.01(7)	0(0)	non tumor-specific	nAS	no
EP400P1_LS010	chr12:132085316|132090849:+	EP400P1	EP400 pseudogene 1	pseudogene	no	ENST00000488030.5;ENST00000443539.6;ENST00000392352.5	2.124	0.624	3.023	0.718(6880)	0.55(386)	0.91(15812)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL359182.2_UP_LS0012	chr9:105226653|105245019:-	AL359182.2	-	lncRNA gene	no	.	1.200	0.662	0.000	0.028(270)	0.061(43)	0(0)	non tumor-specific	nAS	no
UN_REXO1_LS0049	chr19:1828631|1830787:-	REXO1	RNA exonuclease 1 homolog	protein coding gene	no	.	1.044	0.237	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NCOA4_LS0022	chr10:46010386|46010817:+	NCOA4	nuclear receptor coactivator 4	protein coding gene	yes	.	4.412	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EGFL7_UP_LS0013	chr9:136610767|136611443:+	EGFL7	EGF like domain multiple 7	protein coding gene	no	.	3.523	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
ENPP3_LS025	chr6:131718738|131720292:+	ENPP3	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein coding gene	no	ENST00000414305.5;ENST00000357639.7;ENST00000358229.6	19.824	6.853	1.591	0.326(3125)	0.605(425)	0.616(10716)	non tumor-specific	nAS	yes
UN_GPC6_LS0044	chr13:94306123|94336588:+	GPC6	glypican 6	protein coding gene	no	.	2.129	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00322_UP_LS0011	chr1:153026823|153028212:-	RF00322	-	small non-coding RNA gene	no	.	3.985	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PPP1R12A_LS022	chr12:79793928|79795638:-	PPP1R12A	protein phosphatase 1 regulatory subunit 12A	protein coding gene	no	ENST00000261207.9;ENST00000450142.6;ENST00000437004.6;ENST00000546762.5;ENST00000550903.5;ENST00000550299.5;ENST00000546369.5;ENST00000550107.5;ENST00000551781.2	34.316	25.934	42.856	0.976(9353)	0.991(696)	0.979(17016)	non tumor-specific	alt_3prime	yes
FRAS1_LS033	chr4:78387701|78400734:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000325942.10;ENST00000512123.3	3.713	2.968	1.212	0.239(2286)	0.446(313)	0.437(7602)	non tumor-specific	nAS	yes
UN_LIMS2_LS0041	chr2:127643072|127646957:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	1.650	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRMT7_LS0006	chr16:68335565|68337459:+	PRMT7	protein arginine methyltransferase 7	protein coding gene	no	.	4.245	1.087	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL008720.1_UP_LS0013	chr22:48475964|48476310:-	AL008720.1	-	lncRNA gene	no	.	2.453	0.558	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	nAS	no
PARP1_LS001	chr1:226361541|226361969:-	PARP1	poly(ADP-ribose) polymerase 1	protein coding gene	yes	ENST00000366794.9;ENST00000490921.5;ENST00000463968.5;ENST00000491816.1	185.459	62.523	99.097	0.992(9505)	0.99(695)	0.979(17021)	non tumor-specific	alt_3prime	yes
XKR8_LS003	chr1:27963693|27965719:+	XKR8	XK related 8	protein coding gene	no	.;.	1.723	0.517	0.000	0.004(36)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_ACBD4_LS0010	chr17:45137454|45137668:+	ACBD4	acyl-CoA binding domain containing 4	protein coding gene	no	.	5.629	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_SFTPC_LS0014	chr8:22162636|22163157:-	SFTPC	surfactant protein C	protein coding gene	no	.	36.973	187.130	0.000	0.006(59)	0.084(59)	0(0)	non tumor-specific	nAS	no
LINC00882_LS016	chr3:107129992|107240443:-	LINC00882	long intergenic non-protein coding RNA 882	lncRNA gene	no	ENST00000484698.5;ENST00000607801.5;ENST00000477210.6;ENST00000479612.6;ENST00000473636.1	2.570	2.064	3.402	0.575(5511)	0.719(505)	0.765(13292)	non tumor-specific	nAS	yes
UN_UIMC1_UP_LS0001	chr5:177127550|177141561:-	UIMC1	ubiquitin interaction motif containing 1	protein coding gene	yes	.	7.745	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL662797.1_UP_LS0002	chr6:30724450|30735279:-	AL662797.1	-	lncRNA gene	no	.	7.501	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ACBD6_LS012	chr1:180288517|180314692:-	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	ENST00000645415.1;ENST00000642319.1;ENST00000496993.5;ENST00000475338.2;ENST00000367595.3	96.861	40.295	77.987	0.997(9549)	0.993(697)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_LMBR1_LS0019	chr7:156676683|156677903:-	LMBR1	limb development membrane protein 1	protein coding gene	no	.	1.544	0.031	0.000	0.012(117)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LRRC8A_LS0110	chr9:128909300|128916438:-	LRRC8A	leucine rich repeat containing 8 VRAC subunit A	protein coding gene	no	.	1.001	0.169	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PRKACA_LS0001	chr19:14091782|14102693:+	PRKACA	protein kinase cAMP-activated catalytic subunit alpha	protein coding gene	no	.	1.704	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLXNA4_LS0038	chr7:132228469|132239265:-	PLXNA4	plexin A4	protein coding gene	no	.	0.715	1.796	0.000	0.001(13)	0.036(25)	0(0)	non tumor-specific	nAS	no
ADAT1_LS016	chr16:75619743|75620266:-	ADAT1	adenosine deaminase tRNA specific 1	protein coding gene	no	ENST00000565109.5	0.036	0.008	0.614	0.036(349)	0.036(25)	0.05(867)	non tumor-specific	exon_skip	yes
BCKDHB_LS001	chr6:80106889|80127547:+	BCKDHB	branched chain keto acid dehydrogenase E1 subunit beta	protein coding gene	yes	ENST00000369760.8;ENST00000356489.9;ENST00000320393.8	11.409	12.382	11.741	0.942(9030)	0.986(692)	0.965(16767)	non tumor-specific	alt_5prime	yes
TRIM33_LS013	chr1:114410316|114420380:-	TRIM33	tripartite motif containing 33	protein coding gene	no	ENST00000448034.5	0.624	0.430	1.487	0.613(5870)	0.768(539)	0.621(10786)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TMEM219_UP_LS0003	chr16:29925564|29927767:+	TMEM219	transmembrane protein 219	protein coding gene	no	.	0.771	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HMGB3P10_UP_LS0002	chr1:99645793|99646317:+	HMGB3P10	high mobility group box 3 pseudogene 10	pseudogene	no	.	1.140	0.246	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BLMH_LS017	chr17:30291508|30291807:-	BLMH	bleomycin hydrolase	protein coding gene	no	ENST00000261714.10;ENST00000578090.5;ENST00000577623.5;ENST00000577290.1;ENST00000582749.1	21.276	12.873	15.944	0.965(9241)	0.979(687)	0.976(16967)	non tumor-specific	alt_5prime	yes
UN_KDM8_LS0009	chr16:27219771|27219929:-	KDM8	lysine demethylase 8	protein coding gene	yes	.	1.159	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LSM8_LS0017	chr7:118191030|118191912:+	LSM8	LSM8 homolog, U6 small nuclear RNA associated	protein coding gene	no	.	2.713	0.240	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
KIAA1671_LS002	chr22:24952772|25025633:+	KIAA1671	KIAA1671	protein coding gene	no	.;.	1.720	0.666	0.000	0.054(513)	0.08(56)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAP1A_LS0046	chr1:111620347|111627470:+	RAP1A	RAP1A, member of RAS oncogene family	protein coding gene	yes	.	1.341	1.118	0.000	0.153(1467)	0.289(203)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RPS11_LS0049	chr19:49498046|49499522:+	RPS11	ribosomal protein S11	protein coding gene	no	.	524.511	204.698	0.000	0.046(443)	0.044(31)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
IL17C_LS001	chr16:88638647|88638981:+	IL17C	interleukin 17C	protein coding gene	no	ENST00000244241.4	1.478	0.524	0.775	0.114(1088)	0.036(25)	0.064(1121)	non tumor-specific	nAS	yes
AC004160.1_LS015	chr7:11244479|11248293:+	AC004160.1	-	lncRNA gene	no	ENST00000625468.2;ENST00000428967.5	1.139	0.408	1.188	0.04(384)	0.108(76)	0.39(6771)	non tumor-specific	nAS	yes
UN_TRIM33_LS0027	chr1:114463236|114510551:-	TRIM33	tripartite motif containing 33	protein coding gene	no	.	0.871	0.248	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PDZD4_LS022	chrX:153808595|153830239:-	PDZD4	PDZ domain containing 4	protein coding gene	no	ENST00000164640.8;ENST00000393758.6;ENST00000480650.3	4.781	5.494	8.766	0.478(4578)	0.778(546)	0.923(16049)	non tumor-specific	alt_3prime;exon_skip	yes
GSTZ1_LS009	chr14:77321563|77324870:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000556914.5	0.071	0.031	0.622	0.715(6851)	0.772(542)	0.016(281)	non tumor-specific	nAS	yes
KIAA1191_LS019	chr5:176353428|176355571:-	KIAA1191	KIAA1191	protein coding gene	no	ENST00000506668.5	0.257	0.060	1.024	0.764(7321)	0.84(590)	0.576(10019)	non tumor-specific	exon_skip	yes
DAZ2_LS013	chrY:23236899|23241606:+	DAZ2	deleted in azoospermia 2	protein coding gene	no	ENST00000400493.6	5.906	0.092	0.809	0.006(59)	0.001(1)	0.006(98)	non tumor-specific	exon_skip	yes
PLOD3_LS007	chr7:101207724|101208853:-	PLOD3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein coding gene	no	ENST00000223127.7;ENST00000223127.7;ENST00000223127.7	225.277	68.856	65.098	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_CPO_UP_LS0021	chr2:206935001|206937310:+	CPO	coproporphyrinogen oxidase	protein coding gene	no	.	1.351	0.122	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
CENPW_LS007	chr6:126346318|126348466:+	CENPW	centromere protein W	protein coding gene	yes	ENST00000368326.5;ENST00000368325.5;ENST00000368328.4	39.283	8.521	10.166	0.983(9420)	0.983(690)	0.969(16840)	non tumor-specific	alt_5prime	yes
UN_C7orf55-LUC7L2_LS0054	chr7:139374964|139375506:+	C7orf55-LUC7L2	FMC1-LUC7L2 readthrough	protein coding gene	no	.	2.684	0.947	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GNB5_LS0019	chr15:52179485|52181050:+	GNB5	G protein subunit beta 5	protein coding gene	no	.	1.186	0.037	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NBPF8_UP_LS0011	chr1:120415110|120417175:+	NBPF8	NBPF member 8	pseudogene	no	.	1.095	0.045	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LYPLA2_LS0083	chr1:23795160|23795281:-	LYPLA2	lysophospholipase 2	protein coding gene	no	.	5.316	0.664	0.000	0.01(93)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CREB5_LS0028	chr7:28686197|28712019:+	CREB5	cAMP responsive element binding protein 5	protein coding gene	no	.	0.600	0.311	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HLA-F-AS1_LS0018	chr6:29738455|29747148:-	HLA-F-AS1	HLA-F antisense RNA 1	lncRNA gene	no	.	1.721	0.454	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
NLRC5_LS085	chr16:57079629|57081098:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	ENST00000262510.10;ENST00000436936.5;ENST00000539144.5;ENST00000545081.5;ENST00000538453.5;ENST00000540182.5;ENST00000537056.5;ENST00000534927.5	26.405	9.660	15.634	0.967(9263)	0.96(674)	0.973(16915)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_COL1A1_LS0800	chr17:50195332|50195587:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	4.752	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDHR2_LS0031	chr5:176591759|176591804:+	CDHR2	cadherin related family member 2	protein coding gene	no	.	13.837	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DDX46_LS027	chr5:134790222|134790470:+	DDX46	DEAD-box helicase 46	protein coding gene	no	ENST00000507392.5;ENST00000503946.1	0.252	0.162	4.467	0.498(4772)	0.527(370)	0.924(16054)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_TNIP2_LS0033	chr4:2747945|2755945:-	TNIP2	TNFAIP3 interacting protein 2	protein coding gene	no	.	0.840	0.111	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
LINC00971_LS001	chr3:84639212|84644213:-	LINC00971	long intergenic non-protein coding RNA 971	lncRNA gene	no	ENST00000484892.5	1.788	0.000	0.739	0.001(6)	0(0)	0.005(88)	non tumor-specific	nAS	yes
ZNF544_LS024	chr19:58276429|58277183:+	ZNF544	zinc finger protein 544	protein coding gene	no	ENST00000595981.5	0.088	0.102	1.363	0.46(4412)	0.457(321)	0.635(11035)	non tumor-specific	nAS	yes
UN_ZNF337_LS0006	chr20:25675078|25688703:+	ZNF337	zinc finger protein 337	protein coding gene	no	.	5.110	0.301	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
HP1BP3_LS010	chr1:20765531|20770930:-	HP1BP3	heterochromatin protein 1 binding protein 3	protein coding gene	no	ENST00000419948.5	0.036	0.037	1.621	0.822(7880)	0.869(610)	0.782(13598)	non tumor-specific	alt_3prime;exon_skip	yes
NMT1_LS021	chr17:45105945|45107779:+	NMT1	N-myristoyltransferase 1	protein coding gene	no	ENST00000587670.1	14.606	8.504	0.825	0.859(8233)	0.865(607)	0.417(7251)	non tumor-specific	alt_5prime;intron_retention	yes
NUP210L_LS038	chr1:154141524|154143446:-	NUP210L	nucleoporin 210 like	protein coding gene	no	ENST00000368559.7;ENST00000271854.3	1.397	0.583	0.707	0.009(82)	0.007(5)	0.035(603)	non tumor-specific	nAS	yes
UN_SLC39A4_LS0047	chr8:144414045|144415088:+	SLC39A4	solute carrier family 39 member 4	protein coding gene	yes	.	1.396	0.137	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C2orf27A_UP_LS0026	chr2:131682599|131684709:+	C2orf27A	chromosome 2 open reading frame 27A	pseudogene	no	.	1.100	0.482	0.000	0.088(845)	0.046(32)	0(0)	non tumor-specific	nAS	no
HBP1_LS030	chr7:107196151|107200160:+	HBP1	HMG-box transcription factor 1	protein coding gene	yes	ENST00000468410.5;ENST00000222574.8;ENST00000485846.5;ENST00000463202.5;ENST00000461963.1;ENST00000607681.1;ENST00000468410.5;ENST00000222574.8;ENST00000485846.5;ENST00000463202.5;ENST00000461963.1;ENST00000607681.1	77.346	65.258	99.732	0.996(9545)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MAN2A2_LS045	chr15:90913406|90913614:+	MAN2A2	mannosidase alpha class 2A member 2	protein coding gene	no	ENST00000559717.5;ENST00000360468.7;ENST00000557865.5;ENST00000561448.5;ENST00000557990.1	23.312	15.491	46.568	0.979(9381)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRAPPC2_LS009	chrX:13720497|13734044:-	TRAPPC2	trafficking protein particle complex 2	protein coding gene	no	ENST00000518847.1	0.118	0.071	0.879	0.442(4235)	0.499(350)	0.466(8097)	non tumor-specific	exon_skip	yes
KCND3_LS006	chr1:111780791|111786944:-	KCND3	potassium voltage-gated channel subfamily D member 3	protein coding gene	no	ENST00000369697.5;ENST00000315987.6;ENST00000302127.4	5.403	6.169	3.084	0.385(3691)	0.772(542)	0.782(13585)	non tumor-specific	alt_3prime	yes
CHRND_LS012	chr2:232531463|232531542:+	CHRND	cholinergic receptor nicotinic delta subunit	protein coding gene	no	ENST00000441621.6;ENST00000543200.5;ENST00000258385.7;ENST00000412233.5;ENST00000446616.1	6.343	1.769	1.324	0.033(314)	0.033(23)	0.125(2176)	non tumor-specific	nAS	yes
BEND7_LS029	chr10:13500080|13502861:-	BEND7	BEN domain containing 7	protein coding gene	no	ENST00000378605.3	0.024	0.001	0.661	0.095(909)	0.154(108)	0.007(124)	non tumor-specific	nAS	yes
AC008780.1_LS003	chr5:57578914|57614177:+	AC008780.1	-	lncRNA gene	no	ENST00000513392.1	1.824	0.212	0.745	0.008(76)	0.013(9)	0.037(642)	non tumor-specific	nAS	yes
LINC01822_LS001	chr2:21689324|21710149:-	LINC01822	long intergenic non-protein coding RNA 1822	lncRNA gene	no	ENST00000435682.1	0.491	0.000	0.779	0.01(97)	0(0)	0.013(222)	non tumor-specific	nAS	yes
AL355613.1_LS001	chr6:82932639|82938237:+	AL355613.1	-	lncRNA gene	no	ENST00000451856.1	0.123	0.000	0.923	0(2)	0(0)	0(4)	non tumor-specific	nAS	yes
REEP5_LS002	chr5:112878835|112902380:-	REEP5	receptor accessory protein 5	protein coding gene	no	ENST00000513339.5	0.451	0.772	1.180	0.881(8437)	0.896(629)	0.67(11643)	non tumor-specific	exon_skip	yes
UN_ARL17A_LS0022	chr17:46549843|46553400:+	ARL17A	ADP ribosylation factor like GTPase 17A	protein coding gene	no	.	1.867	0.365	0.000	0.012(113)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
C1orf127_LS012	chr1:10957753|10958714:-	C1orf127	chromosome 1 open reading frame 127	protein coding gene	no	ENST00000418570.6;ENST00000377004.8;ENST00000520253.1	2.056	0.382	0.810	0.028(265)	0.013(9)	0.154(2682)	non tumor-specific	exon_skip	yes
EHF_LS002	chr11:34621219|34642628:+	EHF	ETS homologous factor	protein coding gene	yes	.;.	7.883	0.280	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
AC008752.1_LS001	chr19:9793648|9801922:+	AC008752.1	-	lncRNA gene	no	ENST00000590046.1	0.157	0.016	0.672	0.039(374)	0.019(13)	0.014(247)	non tumor-specific	nAS	yes
UN_Z93930.2_LS0054	chr22:28840435|28844127:+	Z93930.2	-	lncRNA gene	no	.	2.547	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TBC1D3P1_LS004	chr17:60011185|60011570:-	TBC1D3P1	TBC1 domain family member 3 pseudogene 1	pseudogene	no	ENST00000590047.1	1.436	0.000	0.684	0.006(53)	0(0)	0.043(743)	non tumor-specific	nAS	yes
VPS50_LS015	chr7:93257464|93258159:+	VPS50	VPS50 subunit of EARP/GARPII complex	protein coding gene	no	ENST00000251739.9;ENST00000305866.9;ENST00000544910.5;ENST00000441602.5;ENST00000458530.1;ENST00000649152.1;ENST00000436177.5;ENST00000476413.1	5.199	3.558	7.573	0.918(8792)	0.959(673)	0.958(16647)	non tumor-specific	alt_3prime;exon_skip	yes
AC091078.1_LS006	chr15:93322346|93557472:+	AC091078.1	-	lncRNA gene	no	ENST00000553478.1	0.352	0.000	0.749	0.005(45)	0(0)	0.004(71)	non tumor-specific	nAS	yes
UN_NPM1P6_UP_LS0001	chr8:61034205|61131770:+	NPM1P6	nucleophosmin 1 pseudogene 6	pseudogene	no	.	2.714	1.781	0.000	0.002(19)	0.017(12)	0(0)	non tumor-specific	nAS	no
MED28_LS005	chr4:17623794|17628006:+	MED28	mediator complex subunit 28	protein coding gene	no	.;.	4.854	0.065	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LLGL2_LS0050	chr17:75564528|75568476:+	LLGL2	LLGL scribble cell polarity complex component 2	protein coding gene	no	.	10.483	6.104	0.000	0.013(127)	0.028(20)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ABCA13_LS021	chr7:48279920|48281343:+	ABCA13	ATP binding cassette subfamily A member 13	protein coding gene	no	ENST00000435803.5;ENST00000611776.4;ENST00000544596.5	3.479	1.053	1.181	0.111(1060)	0.08(56)	0.095(1647)	non tumor-specific	alt_3prime;intron_retention	yes
UN_KLHDC2_LS0001	chr14:49768462|49768519:-	KLHDC2	kelch domain containing 2	protein coding gene	no	.	2.473	0.287	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
TRA2B_LS005	chr3:185919496|185921104:-	TRA2B	transformer 2 beta homolog	protein coding gene	no	ENST00000453386.6;ENST00000492417.5;ENST00000463328.5;ENST00000414862.5;ENST00000466832.5;ENST00000487615.5;ENST00000456380.5;ENST00000382191.4	223.370	116.743	91.908	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NDC1_LS0028	chr1:53835620|53837601:-	NDC1	NDC1 transmembrane nucleoporin	protein coding gene	no	.	1.112	0.164	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UCP3_LS003	chr11:74004007|74004484:-	UCP3	uncoupling protein 3	protein coding gene	no	ENST00000314032.8;ENST00000426995.2	2.417	1.789	3.186	0.344(3300)	0.342(240)	0.922(16022)	non tumor-specific	nAS	yes
NIPAL2_LS019	chr8:98217286|98222479:-	NIPAL2	NIPA like domain containing 2	protein coding gene	no	ENST00000520545.5	0.842	0.152	1.013	0.05(476)	0.033(23)	0.458(7959)	non tumor-specific	alt_3prime;exon_skip	yes
CD36_LS046	chr7:80674147|80676108:+	CD36	CD36 molecule	protein coding gene	no	ENST00000488048.1;ENST00000488048.1	0.292	1.037	3.606	0.471(4511)	0.741(520)	0.662(11514)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
RGL3_LS015	chr19:11399951|11400202:-	RGL3	ral guanine nucleotide dissociation stimulator like 3	protein coding gene	no	.;.	1.589	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GRK2_LS022	chr11:67282542|67282752:+	GRK2	G protein-coupled receptor kinase 2	protein coding gene	no	ENST00000308595.9;ENST00000416281.6;ENST00000533077.5;ENST00000532099.5;ENST00000526572.5;ENST00000527176.5;ENST00000529815.1	117.720	64.814	109.959	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
HMGXB3_LS019	chr5:150045685|150047624:+	HMGXB3	HMG-box containing 3	protein coding gene	no	ENST00000613459.4;ENST00000503427.5;ENST00000502717.5;ENST00000514469.1	51.231	22.235	37.552	0.992(9503)	0.996(699)	0.979(17016)	non tumor-specific	alt_3prime	yes
UBAP2_LS043	chr9:33998864|34011627:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	ENST00000459988.1	0.009	0.109	0.980	0.285(2730)	0.276(194)	0.475(8260)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC027117.1_LS0002	chr8:17809687|17815041:+	AC027117.1	-	lncRNA gene	no	.	1.102	0.007	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UNC13A_LS037	chr19:17652677|17655274:-	UNC13A	unc-13 homolog A	protein coding gene	no	ENST00000519716.6;ENST00000551649.5;ENST00000552293.5;ENST00000550896.1	6.088	2.456	2.444	0.098(940)	0.011(8)	0.322(5595)	non tumor-specific	nAS	yes
UPF3B_LS014	chrX:119851873|119852773:-	UPF3B	UPF3B regulator of nonsense mediated mRNA decay	protein coding gene	no	ENST00000276201.6;ENST00000345865.6;ENST00000619445.1	13.646	5.930	9.247	0.888(8507)	0.923(648)	0.97(16868)	non tumor-specific	intron_retention	yes
UN_PTPRA_LS0014	chr20:2883526|2892030:-	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	5.357	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AC084026.2_LS001	chr8:29527420|29529791:+	AC084026.2	-	lncRNA gene	no	ENST00000521101.1	0.047	0.078	0.745	0.018(171)	0.011(8)	0.018(306)	non tumor-specific	nAS	yes
UN_AL359219.1_UP_LS0006	chr14:59389642|59458857:-	AL359219.1	-	pseudogene	no	.	2.187	0.076	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
CRTAC1_LS006	chr10:97882828|97884206:-	CRTAC1	cartilage acidic protein 1	protein coding gene	no	ENST00000370597.7;ENST00000370591.6;ENST00000309155.3;ENST00000468549.1	55.891	22.279	16.014	0.688(6596)	0.87(611)	0.875(15217)	non tumor-specific	exon_skip	yes
COG4_LS009	chr16:70483969|70490330:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	ENST00000564415.5;ENST00000323786.9;ENST00000530314.5;ENST00000482252.5;ENST00000564315.1	87.806	46.132	62.883	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPAAR_LS0016	chr9:35929526|35930057:+	SPAAR	small regulatory polypeptide of amino acid response	protein coding gene	no	.	2.296	0.765	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
HSD11B1L_LS001	chr19:5681271|5684022:+	HSD11B1L	hydroxysteroid 11-beta dehydrogenase 1 like	protein coding gene	no	ENST00000581773.5;ENST00000581521.5	0.392	0.000	0.889	0.019(180)	0.01(7)	0.274(4768)	non tumor-specific	nAS	yes
MST1_LS017	chr3:49685732|49685860:-	MST1	serine/threonine kinase 4	protein coding gene	yes	ENST00000449682.2;ENST00000484269.5;ENST00000480268.5;ENST00000494809.1	14.621	25.148	19.186	0.962(9220)	0.959(673)	0.978(17001)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
FAP_LS014	chr2:162194180|162194701:-	FAP	fibroblast activation protein alpha	protein coding gene	no	ENST00000465424.1	0.138	0.093	0.999	0.293(2810)	0.188(132)	0.326(5673)	non tumor-specific	exon_skip	yes
UN_NCL_LS0067	chr2:231455267|231455560:-	NCL	nucleolin	protein coding gene	no	.	76.634	13.582	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
NUB1_LS027	chr7:151376811|151377047:+	NUB1	negative regulator of ubiquitin like proteins 1	protein coding gene	no	ENST00000413040.6;ENST00000568733.5;ENST00000470229.6;ENST00000460712.1	70.196	41.071	66.615	0.986(9447)	0.986(692)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF462_LS020	chr9:106935621|106972005:+	ZNF462	zinc finger protein 462	protein coding gene	no	ENST00000469433.5	0.185	0.021	0.678	0.036(347)	0.031(22)	0.062(1072)	non tumor-specific	exon_skip	yes
UN_ANKRD13B_LS0014	chr17:29611643|29611928:+	ANKRD13B	ankyrin repeat domain 13B	protein coding gene	no	.	2.149	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLOD2_LS002	chr3:146071167|146071277:-	PLOD2	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein coding gene	no	ENST00000461497.5;ENST00000282903.9;ENST00000360060.7;ENST00000494950.5	116.387	57.168	32.784	0.972(9314)	0.997(700)	0.954(16584)	non tumor-specific	alt_3prime	yes
RALGAPB_LS020	chr20:38532859|38534385:+	RALGAPB	Ral GTPase activating protein non-catalytic subunit beta	protein coding gene	no	ENST00000632792.1	5.974	0.000	0.998	0(3)	0(0)	0.122(2126)	non tumor-specific	nAS	yes
GATAD2B_LS006	chr1:153816585|153817372:-	GATAD2B	GATA zinc finger domain containing 2B	protein coding gene	no	ENST00000634564.1	3.066	1.079	1.057	0.077(742)	0.07(49)	0.602(10470)	non tumor-specific	nAS	yes
FIBCD1_LS004	chr9:130911888|130923744:-	FIBCD1	fibrinogen C domain containing 1	protein coding gene	no	ENST00000448616.5;ENST00000444139.5;ENST00000372338.8;ENST00000372337.6;ENST00000451466.1	4.714	5.009	1.355	0.332(3178)	0.179(126)	0.239(4162)	non tumor-specific	nAS	yes
DNAH10_LS049	chr12:123873710|123875231:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	3.331	1.463	1.087	0.013(125)	0.067(47)	0.098(1697)	non tumor-specific	nAS	yes
UN_PIK3C2B_LS0030	chr1:204446005|204446087:-	PIK3C2B	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein coding gene	no	.	2.546	0.751	0.000	0.043(408)	0.024(17)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MAZ_LS0119	chr16:29808293|29808597:+	MAZ	MYC associated zinc finger protein	protein coding gene	no	.	8.337	1.590	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UHRF1BP1_LS012	chr6:34857470|34857724:+	UHRF1BP1	UHRF1 binding protein 1	protein coding gene	no	ENST00000452449.6;ENST00000192788.5	7.242	3.699	3.099	0.781(7487)	0.849(596)	0.88(15293)	non tumor-specific	nAS	yes
UN_WDR35_LS0025	chr2:19982534|19984302:-	WDR35	WD repeat domain 35	protein coding gene	no	.	3.892	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FUS_LS0233	chr16:31191013|31191080:+	FUS	FUS RNA binding protein	protein coding gene	yes	.	216.449	5.773	0.000	0.01(96)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PLIN3_LS018	chr19:4866994|4867609:-	PLIN3	perilipin 3	protein coding gene	no	ENST00000589494.1	0.006	0.002	0.619	0.078(750)	0.088(62)	0.039(685)	non tumor-specific	exon_skip;mutex_exons	yes
HPS4_LS034	chr22:26471388|26472302:-	HPS4	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein coding gene	no	ENST00000464362.5	0.272	0.141	1.588	0.609(5834)	0.531(373)	0.735(12776)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_RPS2_LS0103	chr16:1962623|1963225:+	RPS2	ribosomal protein S2	protein coding gene	no	.	0.558	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
CCHCR1_LS029	chr6:31154799|31156731:-	CCHCR1	coiled-coil alpha-helical rod protein 1	protein coding gene	no	ENST00000396268.7;ENST00000376266.9;ENST00000396263.6;ENST00000451521.6;ENST00000509552.5;ENST00000448141.6;ENST00000508683.5;ENST00000448162.6;ENST00000513222.1;ENST00000503420.5;ENST00000507751.5;ENST00000455279.6;ENST00000503934.5;ENST00000426967.5;ENST00000502557.5;ENST00000507829.5;ENST00000428174.1;ENST00000507226.1	7.370	4.789	14.237	0.985(9439)	0.984(691)	0.978(16991)	non tumor-specific	exon_skip;intron_retention	yes
UROS_LS034	chr10:125812288|125815034:-	UROS	uroporphyrinogen III synthase	protein coding gene	no	ENST00000368797.9;ENST00000649619.1;ENST00000368786.5;ENST00000650587.1;ENST00000648427.1;ENST00000649536.1;ENST00000650524.1;ENST00000650185.1;ENST00000648119.1;ENST00000420761.5;ENST00000649275.1;ENST00000649450.1;ENST00000368778.7;ENST00000368774.1;ENST00000368797.9;ENST00000649619.1;ENST00000368786.5;ENST00000650587.1;ENST00000648427.1;ENST00000649536.1;ENST00000650524.1;ENST00000650185.1;ENST00000648119.1;ENST00000420761.5;ENST00000649275.1;ENST00000649450.1;ENST00000368778.7;ENST00000368774.1	106.459	76.495	64.392	0.995(9536)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
NSG1_LS005	chr4:4385201|4385473:+	NSG1	neuronal vesicle trafficking associated 1	protein coding gene	no	ENST00000421177.6;ENST00000505246.5	0.538	0.235	0.873	0.025(241)	0.004(3)	0.049(852)	non tumor-specific	nAS	yes
UN_CA5B_LS0007	chrX:15693058|15749971:+	CA5B	carbonic anhydrase 5B	protein coding gene	no	.	2.383	0.972	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
MADD_LS006	chr11:47269750|47274563:+	MADD	MAP kinase activating death domain	protein coding gene	yes	ENST00000534808.1;ENST00000534808.1	0.081	0.046	0.944	0.317(3041)	0.453(318)	0.472(8209)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LIPC_LS0038	chr15:58544342|58546281:-	LIPC	lipase C, hepatic type	protein coding gene	no	.	3.808	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TNS2_LS019	chr12:53058102|53058316:+	TNS2	tensin 2	protein coding gene	no	ENST00000379902.7;ENST00000314276.7;ENST00000314250.10;ENST00000549311.7;ENST00000546602.5;ENST00000552570.5;ENST00000549700.5;ENST00000549789.1;ENST00000547223.1;ENST00000602335.1	23.292	35.315	121.372	0.975(9338)	0.991(696)	0.959(16668)	non tumor-specific	alt_5prime;exon_skip	yes
PRRX2-AS1_LS001	chr9:129713261|129718573:-	PRRX2-AS1	PRRX2 antisense RNA 1	lncRNA gene	no	ENST00000440413.1	0.335	0.013	0.704	0.004(42)	0.003(2)	0.013(219)	non tumor-specific	nAS	yes
UN_TM4SF19_LS0010	chr3:196323981|196324282:+	TM4SF19	transmembrane 4 L six family member 19	protein coding gene	no	.	4.927	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCRIP2_LS0034	chr16:646604|647417:+	MCRIP2	MAPK regulated corepressor interacting protein 2	protein coding gene	no	.	5.731	2.728	0.000	0.037(357)	0.077(54)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_RNF216P1_LS0005	chr7:4976436|4979011:+	RNF216P1	ring finger protein 216 pseudogene 1	pseudogene	no	.	0.772	0.344	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
ECHDC2_LS032	chr1:52905436|52906519:-	ECHDC2	enoyl-CoA hydratase domain containing 2	protein coding gene	no	.;.	16.123	3.885	0.000	0.027(258)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
YPEL3_LS007	chr16:30094475|30094789:-	YPEL3	yippee like 3	protein coding gene	yes	ENST00000570099.5	0.034	0.072	3.554	0.733(7025)	0.789(554)	0.931(16181)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MSL1_LS0011	chr17:40122760|40123267:+	MSL1	MSL complex subunit 1	protein coding gene	no	.	5.320	0.803	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
NCKAP1L_LS030	chr12:54532250|54535104:+	NCKAP1L	NCK associated protein 1 like	protein coding gene	no	ENST00000293373.10;ENST00000548221.5;ENST00000545638.2;ENST00000548980.1	36.104	13.747	9.816	0.95(9100)	0.972(682)	0.921(16009)	non tumor-specific	nAS	yes
UN_HMCN2_LS0016	chr9:130359414|130362008:+	HMCN2	hemicentin 2	protein coding gene	no	.	1.482	0.192	0.000	0.005(51)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
GNPAT_LS004	chr1:231251143|231260507:+	GNPAT	glyceronephosphate O-acyltransferase	protein coding gene	no	ENST00000366647.8;ENST00000416000.1	38.400	27.001	21.914	0.984(9426)	0.993(697)	0.978(17002)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL390728.4_LS0022	chr1:247200193|247202010:-	AL390728.4	-	pseudogene	no	.	6.801	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01324_UP_LS0001	chr3:164831546|164898423:-	LINC01324	long intergenic non-protein coding RNA 1324	lncRNA gene	no	.	13.267	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PDE10A_LS045	chr6:165940766|165949255:-	PDE10A	phosphodiesterase 10A	protein coding gene	no	ENST00000581850.1;ENST00000581850.1	0.573	0.285	0.850	0.05(480)	0.14(98)	0.063(1103)	non tumor-specific	alt_5prime;exon_skip	yes
SCN7A_LS022	chr2:166470706|166472317:-	SCN7A	sodium voltage-gated channel alpha subunit 7	protein coding gene	no	ENST00000619410.4;ENST00000621965.4;ENST00000409855.6;ENST00000643258.1;ENST00000441411.2;ENST00000424326.5;ENST00000419992.6	2.742	3.329	2.787	0.098(938)	0.423(297)	0.613(10652)	non tumor-specific	nAS	yes
VARS2_LS055	chr6:30923231|30923353:+	VARS2	valyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000477288.5;ENST00000321897.9;ENST00000625423.2;ENST00000541562.5;ENST00000469358.5;ENST00000476162.5;ENST00000477052.1;ENST00000473916.1	51.839	23.605	33.068	0.996(9543)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPATA6_UP_LS0001	chr1:48492724|48498621:-	SPATA6	spermatogenesis associated 6	protein coding gene	no	.	5.225	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SDC2_LS009	chr8:96537425|96538696:+	SDC2	syndecan 2	protein coding gene	no	ENST00000519587.1	0.638	0.126	0.721	0.035(332)	0.124(87)	0.188(3261)	non tumor-specific	exon_skip	yes
RPS6KB2_LS017	chr11:67431515|67432353:+	RPS6KB2	ribosomal protein S6 kinase B2	protein coding gene	no	ENST00000528964.5	0.214	1.018	4.164	0.889(8513)	0.92(646)	0.944(16404)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GIGYF1_LS023	chr7:100687046|100687298:-	GIGYF1	GRB10 interacting GYF protein 1	protein coding gene	no	ENST00000275732.5;ENST00000646601.1	23.960	10.766	38.349	0.951(9110)	0.967(679)	0.979(17016)	non tumor-specific	nAS	yes
UN_TRPM2_LS0038	chr21:44414074|44417943:+	TRPM2	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	.	3.256	0.385	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
SLC26A7_LS009	chr8:91295703|91318216:+	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	ENST00000522181.5;ENST00000522862.5;ENST00000523719.5;ENST00000617078.3;ENST00000617233.2;ENST00000276609.7;ENST00000309536.6;ENST00000520818.5	6.894	17.674	0.933	0.119(1140)	0.332(233)	0.196(3413)	non tumor-specific	exon_skip	yes
POLR3E_LS010	chr16:22305206|22305379:+	POLR3E	RNA polymerase III subunit E	protein coding gene	no	ENST00000561494.5	0.008	0.013	0.688	0.091(873)	0.071(50)	0.166(2887)	non tumor-specific	exon_skip	yes
UN_AC008676.3_LS0002	chr5:157393224|157412587:+	AC008676.3	-	protein coding gene	no	.	1.793	0.859	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_UBE2H_LS0038	chr7:129951320|129951521:-	UBE2H	ubiquitin conjugating enzyme E2 H	protein coding gene	no	.	1.132	0.190	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SMG7_LS045	chr1:183549923|183550751:+	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000367537.7;ENST00000508461.5;ENST00000347615.6;ENST00000507469.5;ENST00000515829.6	74.326	36.748	42.595	0.994(9519)	0.993(697)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
EIF4G3_LS036	chr1:20969596|20973002:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000374935.7;ENST00000264211.12;ENST00000602326.5;ENST00000400422.6;ENST00000634879.1;ENST00000356916.7;ENST00000438975.5;ENST00000411888.5	21.598	16.090	18.826	0.939(8997)	0.981(689)	0.978(16993)	non tumor-specific	nAS	yes
TDH_LS011	chr8:11362973|11364720:+	TDH	L-threonine dehydrogenase (pseudogene)	pseudogene	no	ENST00000531764.6;ENST00000525664.1	0.767	0.275	0.901	0.043(412)	0.044(31)	0.235(4088)	non tumor-specific	nAS	yes
UN_AC244250.3_UP_LS0109	chr22:22759209|22899620:-	AC244250.3	-	pseudogene	no	.	10.306	1.486	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLRC4-KLRK1_LS030	chr12:10409478|10410099:-	KLRC4-KLRK1	KLRC4-KLRK1 readthrough	protein coding gene	no	ENST00000591546.5;ENST00000588263.5;ENST00000590323.5;ENST00000591937.1	0.495	0.142	0.955	0.067(641)	0.051(36)	0.13(2268)	non tumor-specific	alt_3prime;exon_skip	yes
CASP1_LS016	chr11:105031280|105033064:-	CASP1	caspase 1	protein coding gene	no	ENST00000533400.5;ENST00000436863.7;ENST00000528974.1;ENST00000526511.5;ENST00000532520.1	31.426	21.199	12.359	0.979(9382)	0.994(698)	0.959(16664)	non tumor-specific	exon_skip	yes
RBM20_LS002	chr10:110781884|110783366:+	RBM20	RNA binding motif protein 20	protein coding gene	no	ENST00000369519.3	2.700	0.722	1.632	0.065(625)	0.07(49)	0.418(7269)	non tumor-specific	nAS	yes
DDR1_LS002	chr6:30876559|30888688:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	ENST00000505066.5	0.001	0.010	0.681	0.715(6853)	0.768(539)	0.039(680)	non tumor-specific	exon_skip	yes
AL591719.2_LS001	chr1:108734460|108734545:-	AL591719.2	-	lncRNA gene	no	ENST00000437400.2	0.221	0.000	0.722	0.001(10)	0(0)	0.001(12)	non tumor-specific	nAS	yes
SI_LS026	chr3:165033444|165036389:-	SI	sucrase-isomaltase	protein coding gene	no	ENST00000264382.7	14.945	26.513	3.673	0.071(680)	0.125(88)	0.038(669)	non tumor-specific	nAS	yes
ANO10_LS008	chr3:43549848|43551472:-	ANO10	anoctamin 10	protein coding gene	no	ENST00000448045.1	0.447	0.373	2.036	0.623(5967)	0.665(467)	0.828(14396)	non tumor-specific	exon_skip	yes
AL591501.1_LS001	chrX:33726635|33853615:+	AL591501.1	-	lncRNA gene	no	ENST00000439992.5	0.742	0.301	0.984	0.047(447)	0.05(35)	0.256(4457)	non tumor-specific	nAS	yes
GGNBP1_LS006	chr6:33584642|33584731:+	GGNBP1	gametogenetin binding protein 1 (pseudogene)	pseudogene	no	ENST00000610663.1	0.259	0.000	0.694	0.003(27)	0(0)	0.006(96)	non tumor-specific	nAS	yes
UN_KCNH2_LS0062	chr7:150974941|150978152:-	KCNH2	potassium voltage-gated channel subfamily H member 2	protein coding gene	no	.	1.133	0.581	0.000	0.006(61)	0.021(15)	0(0)	non tumor-specific	alt_5prime	no
UN_ID4_LS0003	chr6:19837494|19837950:+	ID4	inhibitor of DNA binding 4, HLH protein	protein coding gene	yes	.	60.828	0.007	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPS1_LS035	chr17:82055222|82055740:+	GPS1	G protein pathway suppressor 1	protein coding gene	no	ENST00000578552.5;ENST00000320548.8;ENST00000624957.3;ENST00000623691.3;ENST00000580141.5;ENST00000306823.10;ENST00000584460.5;ENST00000392358.6;ENST00000623761.3;ENST00000578279.1	278.309	139.618	133.231	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MSI2_LS0025	chr17:57413988|57529676:+	MSI2	musashi RNA binding protein 2	protein coding gene	no	.	2.892	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MAU2_LS023	chr19:19349232|19349325:+	MAU2	MAU2 sister chromatid cohesion factor	protein coding gene	no	ENST00000262815.12;ENST00000587938.7;ENST00000262816.11;ENST00000587638.6;ENST00000587362.5;ENST00000587709.5;ENST00000589947.7;ENST00000590882.1	21.730	15.135	43.899	0.98(9394)	0.989(694)	0.979(17020)	non tumor-specific	nAS	yes
MVK_LS014	chr12:109579946|109586022:+	MVK	mevalonate kinase	protein coding gene	no	ENST00000392727.7;ENST00000625889.2	0.415	0.539	1.324	0.864(8281)	0.84(590)	0.61(10611)	non tumor-specific	exon_skip	yes
UN_ARNT_LS0036	chr1:150861395|150876543:-	ARNT	aryl hydrocarbon receptor nuclear translocator	protein coding gene	no	.	1.075	0.517	0.000	0.033(313)	0.084(59)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SLK_LS003	chr10:103992646|103992984:+	SLK	STE20 like kinase	protein coding gene	no	ENST00000335753.8;ENST00000369755.3	31.519	30.053	17.391	0.901(8629)	0.973(683)	0.968(16830)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF420_LS0003	chr19:37008082|37010817:+	ZNF420	zinc finger protein 420	protein coding gene	no	.	2.461	0.133	0.000	0.013(122)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLHDC9_LS002	chr1:161098481|161098666:+	KLHDC9	kelch domain containing 9	protein coding gene	no	ENST00000392191.6;ENST00000494418.1	0.261	0.287	1.162	0.426(4082)	0.477(335)	0.424(7362)	non tumor-specific	intron_retention	yes
UN_TMCC3_LS0003	chr12:94571737|94572869:-	TMCC3	transmembrane and coiled-coil domain family 3	protein coding gene	no	.	1.774	1.003	0.000	0.004(40)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_LINC00476_LS0020	chr9:95813922|95874980:-	LINC00476	long intergenic non-protein coding RNA 476	lncRNA gene	no	.	2.615	1.349	0.000	0.092(881)	0.185(130)	0(0)	non tumor-specific	nAS	no
ATF2_LS021	chr2:175114868|175118251:-	ATF2	glial cell derived neurotrophic factor	protein coding gene	no	ENST00000435231.6	0.317	0.153	0.735	0.29(2778)	0.292(205)	0.152(2639)	non tumor-specific	exon_skip	yes
GREB1L_LS024	chr18:21477356|21485620:+	GREB1L	GREB1 like retinoic acid receptor coactivator	protein coding gene	no	ENST00000424526.5;ENST00000269218.10;ENST00000580732.6;ENST00000578955.1	1.955	0.511	1.441	0.148(1419)	0.184(129)	0.477(8298)	non tumor-specific	exon_skip	yes
UN_RHEX_LS0146	chr1:206083650|206098081:+	RHEX	regulator of hemoglobinization and erythroid cell expansion	protein coding gene	no	.	5.273	1.450	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
BCAS3_LS038	chr17:61017076|61034666:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	ENST00000585979.5;ENST00000592827.1	0.020	0.048	0.922	0.703(6740)	0.751(527)	0.018(306)	non tumor-specific	exon_skip	yes
ERC1_LS038	chr12:991487|1027423:+	ERC1	ELKS/RAB6-interacting/CAST family member 1	protein coding gene	no	ENST00000546231.6;ENST00000542302.6	0.006	0.000	0.474	0(4)	0.001(1)	0(8)	non tumor-specific	mutex_exons	yes
FAM214B_LS010	chr9:35107568|35108128:-	FAM214B	family with sequence similarity 214 member B	protein coding gene	no	ENST00000378566.5	0.202	0.335	2.262	0.839(8034)	0.877(616)	0.878(15265)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AP003049.2_LS005	chr11:109512725|109583527:-	AP003049.2	-	lncRNA gene	no	ENST00000532992.5;ENST00000532929.1	2.979	0.000	0.695	0.01(100)	0(0)	0.021(370)	non tumor-specific	nAS	yes
RD3L_LS001	chr14:103941103|103941397:-	RD3L	retinal degeneration 3 like	protein coding gene	no	ENST00000557640.1	1.835	0.226	5.908	0.003(25)	0.028(20)	0.085(1485)	non tumor-specific	nAS	yes
UN_MGRN1_LS0003	chr16:4617728|4619489:+	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	2.004	0.538	0.000	0.015(139)	0.057(40)	0(0)	non tumor-specific	nAS	no
COL11A1_LS054	chr1:103003268|103004444:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	ENST00000370096.8;ENST00000358392.6;ENST00000353414.8;ENST00000635193.1;ENST00000512756.5;ENST00000461720.6;ENST00000645458.1;ENST00000647280.1;ENST00000644186.1	10.417	3.524	2.406	0.467(4477)	0.066(46)	0.428(7433)	non tumor-specific	alt_5prime;exon_skip	yes
EIF2B3_LS016	chr1:44941665|44978315:-	EIF2B3	eukaryotic translation initiation factor 2B subunit gamma	protein coding gene	no	ENST00000620860.4;ENST00000360403.6;ENST00000372183.7;ENST00000372182.6	51.075	32.275	35.418	0.996(9545)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UCHL1-AS1_UP_LS0002	chr4:41303113|41359406:-	UCHL1-AS1	UCHL1 antisense RNA 1 (head to head)	lncRNA gene	no	.	1.519	0.050	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6-99P_UP_LS0001	chr11:39162044|39162574:+	RNU6-99P	RNA, U6 small nuclear 99, pseudogene	small non-coding RNA gene	no	.	3.621	0.409	0.000	0.007(70)	0.003(2)	0(0)	non tumor-specific	nAS	no
DHX32_LS002	chr10:125838387|125839001:-	DHX32	DEAH-box helicase 32 (putative)	protein coding gene	no	ENST00000368721.5;ENST00000284690.3	85.378	49.396	45.242	0.994(9525)	0.997(700)	0.979(17015)	non tumor-specific	exon_skip	yes
NEMP1_LS014	chr12:57069306|57070674:-	NEMP1	nuclear envelope integral membrane protein 1	protein coding gene	no	ENST00000300128.8	8.024	2.963	2.112	0.807(7730)	0.87(611)	0.787(13680)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
IGFN1_LS036	chr1:201218658|201221444:+	IGFN1	immunoglobulin like and fibronectin type III domain containing 1	protein coding gene	no	ENST00000437879.6;ENST00000335211.8;ENST00000295591.12;ENST00000412892.2;ENST00000473483.1	7.828	2.872	2.589	0.161(1540)	0.162(114)	0.597(10372)	non tumor-specific	alt_3prime;exon_skip	yes
MUC16_LS023	chr19:8871653|8876369:-	MUC16	mucin 16, cell surface associated	protein coding gene	no	ENST00000397910.8;ENST00000596768.5;ENST00000601404.5;ENST00000599436.1	19.502	4.708	1.720	0.322(3083)	0.299(210)	0.204(3538)	non tumor-specific	exon_skip	yes
UN_ANKS1A_LS0030	chr6:34994422|34997710:+	ANKS1A	ankyrin repeat and sterile alpha motif domain containing 1A	protein coding gene	no	.	3.445	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DCN_UP_LS0007	chr12:91252827|91253524:-	DCN	decorin	protein coding gene	yes	.	3.028	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SPINT1_LS019	chr15:40854086|40854639:+	SPINT1	serine peptidase inhibitor, Kunitz type 1	protein coding gene	no	ENST00000566928.5;ENST00000569589.1;ENST00000566928.5;ENST00000569589.1	0.269	0.328	2.585	0.789(7563)	0.856(601)	0.429(7454)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CD99L2_LS0056	chrX:150897970|150898522:-	CD99L2	CD99 molecule like 2	protein coding gene	no	.	2.527	0.022	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_MIPEP_LS0028	chr13:23809924|23834056:-	MIPEP	mitochondrial intermediate peptidase	protein coding gene	no	.	9.022	1.182	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM20C_LS016	chr7:248430|255849:+	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	ENST00000313766.5;ENST00000515795.1;ENST00000313766.5;ENST00000515795.1	89.753	67.754	54.842	0.989(9472)	0.997(700)	0.973(16909)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TADA3_LS0032	chr3:9783942|9784028:-	TADA3	transcriptional adaptor 3	protein coding gene	no	.	2.674	0.035	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FBXO38_LS037	chr5:148439792|148440424:+	FBXO38	F-box protein 38	protein coding gene	no	ENST00000296701.10;ENST00000340253.9;ENST00000394370.7;ENST00000513826.1;ENST00000505399.2	48.521	31.065	37.667	0.994(9523)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PARD6G_LS0005	chr18:80158593|80193798:-	PARD6G	par-6 family cell polarity regulator gamma	protein coding gene	no	.	2.969	0.751	0.000	0.011(108)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAH12_LS035	chr3:57403501|57404969:-	DNAH12	dynein axonemal heavy chain 12	protein coding gene	no	ENST00000495027.5;ENST00000351747.6	2.154	1.038	0.837	0.014(132)	0.058(41)	0.109(1898)	non tumor-specific	nAS	yes
UN_ITPRID2_LS0040	chr2:181918675|181918767:+	ITPRID2	ITPR interacting domain containing 2	protein coding gene	no	.	4.626	2.272	0.000	0.009(88)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_IGLC1_UP_LS0051	chr22:22793002|22893781:+	IGLC1	immunoglobulin lambda constant 1	no	no	.	287.826	5.184	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC005786.3_UP_LS0008	chr19:3535865|3543235:+	AC005786.3	-	lncRNA gene	no	.	5.579	1.059	0.000	0.019(178)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_TNS1_LS0294	chr2:217992522|217993386:+	TNS1	tensin 1	protein coding gene	no	.	3.689	1.334	0.000	0.114(1097)	0.162(114)	0(0)	non tumor-specific	nAS	no
UN_TSC22D1_LS0029	chr13:44434883|44435294:-	TSC22D1	TSC22 domain family member 1	protein coding gene	yes	.	8.824	1.980	0.000	0.006(61)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_FURIN_LS0117	chr15:90882329|90882473:-	FURIN	furin, paired basic amino acid cleaving enzyme	protein coding gene	no	.	2.901	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
NID2_LS014	chr14:52020178|52028722:-	NID2	nidogen 2	protein coding gene	no	ENST00000556572.1	1.515	0.562	2.609	0.653(6254)	0.655(460)	0.649(11274)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPT1_LS0064	chr1:40073323|40073458:-	PPT1	palmitoyl-protein thioesterase 1	protein coding gene	no	.	15.215	2.001	0.000	0.01(99)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
UN_POTEKP_UP_LS0031	chr2:131577614|131580152:+	POTEKP	POTE ankyrin domain family member K, pseudogene	pseudogene	no	.	3.521	0.261	0.000	0.033(317)	0.048(34)	0(0)	non tumor-specific	nAS	no
UN_TGFBR3_UP_LS0006	chr1:92027204|92029365:-	TGFBR3	transforming growth factor beta receptor 3	protein coding gene	yes	.	3.130	1.020	0.000	0.136(1305)	0.061(43)	0(0)	non tumor-specific	nAS	no
UN_FER1L5_LS0001	chr2:96654496|96658038:+	FER1L5	fer-1 like family member 5	protein coding gene	no	.	1.742	0.707	0.000	0.002(16)	0.046(32)	0(0)	non tumor-specific	nAS	no
ZNF487_LS004	chr10:43437262|43475696:+	ZNF487	zinc finger protein 487	protein coding gene	no	ENST00000451167.1	0.436	0.164	0.648	0.042(403)	0.054(38)	0.028(492)	non tumor-specific	alt_3prime	yes
UN_NT5C3AP1_UP_LS0005	chr4:117815153|117817605:-	NT5C3AP1	NT5C3A pseudogene 1	pseudogene	no	.	2.569	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PELI2_LS0004	chr14:56119023|56178335:+	PELI2	pellino E3 ubiquitin protein ligase family member 2	protein coding gene	no	.	1.281	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C5orf17_LS0033	chr5:24170894|24177837:+	C5orf17	chromosome 5 putative open reading frame 17	lncRNA gene	no	.	1.074	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MT-RNR2_LS0022	chrM:1922|2190:-	MT-RNR2	mitochondrially encoded 16S rRNA	small non-coding RNA gene	no	.	34.302	4.981	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
DAZ4_LS020	chrY:24869290|24871599:+	DAZ4	deleted in azoospermia 4	protein coding gene	no	ENST00000382314.6;ENST00000382432.9;ENST00000440066.6;ENST00000382296.4	11.035	1.860	0.714	0.007(69)	0.007(5)	0.001(20)	non tumor-specific	exon_skip	yes
CCER2_LS005	chr19:38911852|38912098:-	CCER2	coiled-coil glutamate rich protein 2	protein coding gene	no	ENST00000571838.1	0.828	0.327	2.304	0.249(2385)	0.125(88)	0.774(13459)	non tumor-specific	nAS	yes
TENT2_LS013	chr5:79620083|79620567:+	TENT2	terminal nucleotidyltransferase 2	protein coding gene	no	ENST00000514095.5	0.231	0.141	0.698	0.177(1700)	0.249(175)	0.19(3305)	non tumor-specific	exon_skip;intron_retention	yes
UN_NORAD_LS0097	chr20:36049449|36050111:-	NORAD	non-coding RNA activated by DNA damage	lncRNA gene	no	.	12.506	1.704	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SEC62_LS0023	chr3:169983253|169988240:+	SEC62	SEC62 homolog, preprotein translocation factor	protein coding gene	yes	.	60.433	26.133	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UNC5B-AS1_LS002	chr10:71217635|71217994:-	UNC5B-AS1	UNC5B antisense RNA 1	lncRNA gene	no	ENST00000447119.2	2.071	0.625	1.850	0.587(5627)	0.496(348)	0.573(9952)	non tumor-specific	nAS	yes
UN_CCNK_LS0106	chr14:99510553|99510616:-	CCNK	cyclin K	protein coding gene	no	.	4.660	0.279	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC109583.3_LS0022	chr3:46754648|46811106:-	AC109583.3	-	protein coding gene	no	.	1.829	0.391	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PPP5C_LS0036	chr19:46390667|46390745:-	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	.	2.309	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SERPINB4_LS0007	chr18:63640991|63641091:-	SERPINB4	serpin family B member 4	protein coding gene	no	.	17.772	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ALG1L12P_LS001	chr8:12421144|12422681:+	ALG1L12P	ALG1 like 12, pseudogene	pseudogene	no	ENST00000515046.2	0.247	0.073	0.836	0.022(213)	0.043(30)	0.025(432)	non tumor-specific	nAS	yes
AC073188.6_LS001	chr7:63396515|63397100:-	AC073188.6	-	lncRNA gene	no	ENST00000616616.1	0.185	0.000	0.874	0.001(11)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_STOML1_UP_LS0004	chr15:74036290|74048580:-	STOML1	stomatin like 1	protein coding gene	no	.	7.703	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AMY1B_LS005	chr1:103691610|103692427:-	AMY1B	amylase alpha 1B	protein coding gene	no	ENST00000370080.7;ENST00000330330.9	7.340	4.763	0.790	0.211(2018)	0.346(243)	0.143(2479)	non tumor-specific	nAS	yes
CACNA1A_LS018	chr19:13227527|13230082:-	CACNA1A	calcium voltage-gated channel subunit alpha1 A	protein coding gene	no	ENST00000614285.4;ENST00000360228.10;ENST00000635895.1;ENST00000585802.6;ENST00000637432.1;ENST00000638029.1;ENST00000636012.1;ENST00000635727.1;ENST00000637276.1;ENST00000636549.1	2.101	2.034	1.811	0.083(797)	0.02(14)	0.323(5623)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AC005100.1_LS0017	chr7:25492890|25496599:-	AC005100.1	-	lncRNA gene	no	.	1.683	1.724	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MT-CO3_UP_LS0034	chrM:7852|8921:+	MT-CO3	mitochondrially encoded cytochrome c oxidase III	protein coding gene	no	.	597.812	2.976	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
SULF2_LS016	chr20:47665293|47665857:-	SULF2	sulfatase 2	protein coding gene	no	ENST00000359930.8;ENST00000484875.5;ENST00000467815.5	133.440	60.355	53.038	0.961(9204)	0.99(695)	0.979(17013)	non tumor-specific	nAS	yes
KDM5A_LS029	chr12:366104|384031:-	KDM5A	lysine demethylase 5A	protein coding gene	yes	ENST00000399788.6;ENST00000536014.5	14.412	9.660	7.716	0.849(8134)	0.934(656)	0.961(16708)	non tumor-specific	exon_skip	yes
UN_AL669831.1_LS0018	chr1:726992|727674:-	AL669831.1	-	pseudogene	no	.	0.476	0.104	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL360157.1_UP_LS0017	chr6:82059679|82072177:-	AL360157.1	-	lncRNA gene	no	.	2.059	0.168	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNF213_LS0054	chr17:80315557|80315628:+	RNF213	ring finger protein 213	protein coding gene	no	.	3.239	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00663_LS007	chr19:19762646|19776327:-	LINC00663	long intergenic non-protein coding RNA 663	lncRNA gene	no	ENST00000586645.5;ENST00000589910.5;ENST00000588223.5;ENST00000589508.1	1.358	1.187	2.487	0.707(6773)	0.845(593)	0.857(14903)	non tumor-specific	nAS	yes
UN_KIAA1671_LS0122	chr22:25193604|25194188:-	KIAA1671	KIAA1671	protein coding gene	no	.	0.862	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MYH11_LS054	chr16:15778843|15782385:-	MYH11	myosin heavy chain 11	protein coding gene	no	ENST00000396324.7;ENST00000452625.6;ENST00000576790.6;ENST00000300036.5;ENST00000570785.1	43.039	426.062	46.124	0.711(6812)	0.96(674)	0.955(16595)	non tumor-specific	exon_skip	yes
UN_HIVEP3_LS0042	chr1:41849035|41863036:-	HIVEP3	HIVEP zinc finger 3	protein coding gene	yes	.	1.174	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_FP671120.2_UP_LS0139	chr21:8210932|8255100:-	FP671120.2	-	lncRNA gene	no	.	579.828	256.429	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	nAS	no
AP000770.1_LS002	chr11:116653053|116657942:+	AP000770.1	-	lncRNA gene	no	ENST00000444123.5	3.106	0.000	0.799	0(1)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_AC122108.2_UP_LS0019	chr15:44810517|44811403:-	AC122108.2	-	lncRNA gene	no	.	4.738	0.762	0.000	0.009(82)	0.009(6)	0(0)	non tumor-specific	nAS	no
CCDC162P_LS056	chr6:109354536|109354848:+	CCDC162P	coiled-coil domain containing 162, pseudogene	pseudogene	no	ENST00000621947.1	0.234	0.037	0.694	0.016(158)	0.004(3)	0.003(57)	non tumor-specific	nAS	yes
USO1_LS027	chr4:75809051|75810432:+	USO1	USO1 vesicle transport factor	protein coding gene	no	ENST00000514213.6;ENST00000264904.8	165.166	110.135	107.720	0.995(9531)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
FER1L5_LS003	chr2:96646453|96647778:+	FER1L5	fer-1 like family member 5	protein coding gene	no	ENST00000505256.6	0.872	0.132	0.781	0.024(232)	0.074(52)	0.101(1750)	non tumor-specific	nAS	yes
RBM39_LS028	chr20:35714389|35716740:-	RBM39	RNA binding motif protein 39	protein coding gene	no	ENST00000639702.1;ENST00000463004.5;ENST00000461283.5;ENST00000253363.10;ENST00000361162.10;ENST00000338163.10;ENST00000403542.6;ENST00000528062.7;ENST00000444878.5;ENST00000429968.5;ENST00000492779.5;ENST00000615771.5;ENST00000475651.5;ENST00000490484.7;ENST00000494274.5	168.328	89.484	277.876	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
SEC14L1_LS137	chr17:77215779|77216063:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	6.348	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_GNB5_LS0022	chr15:52180401|52180550:+	GNB5	G protein subunit beta 5	protein coding gene	no	.	1.405	0.166	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC136443.4_LS0001	chr16:14735083|14740888:-	AC136443.4	-	lncRNA gene	no	.	1.462	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
LINC02389_LS003	chr12:64885300|64947316:+	LINC02389	long intergenic non-protein coding RNA 2389	lncRNA gene	no	ENST00000540024.1	0.858	0.000	0.804	0.001(5)	0(0)	0.006(98)	non tumor-specific	nAS	yes
ARPP21_LS022	chr3:35683815|35689307:+	ARPP21	cAMP regulated phosphoprotein 21	protein coding gene	no	ENST00000414496.5	0.327	0.074	1.082	0.036(348)	0.017(12)	0.048(838)	non tumor-specific	exon_skip	yes
ADGRG1_LS013	chr16:57620136|57650253:+	ADGRG1	adhesion G protein-coupled receptor G1	protein coding gene	no	ENST00000568909.5;ENST00000561872.5;ENST00000562003.5	4.766	2.471	8.339	0.184(1767)	0.181(127)	0.3(5221)	non tumor-specific	exon_skip	yes
UN_CALY_LS0006	chr10:133327447|133327905:-	CALY	calcyon neuron specific vesicular protein	protein coding gene	no	.	6.528	0.117	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MROH4P_UP_LS0007	chr8:142599056|142599455:-	MROH4P	maestro heat like repeat family member 4, pseudogene	pseudogene	no	.	10.956	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
CABYR_LS009	chr18:24140267|24155704:+	CABYR	calcium binding tyrosine phosphorylation regulated	protein coding gene	no	ENST00000585037.5	0.080	0.000	0.760	0.014(132)	0.001(1)	0(7)	non tumor-specific	exon_skip	yes
UN_ARHGEF9_LS0022	chrX:63727419|63754315:-	ARHGEF9	Cdc42 guanine nucleotide exchange factor 9	protein coding gene	no	.	1.570	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CLEC3B_LS0018	chr3:45035188|45035524:+	CLEC3B	C-type lectin domain family 3 member B	protein coding gene	no	.	5.115	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC084759.2_LS007	chr15:53974939|53976768:-	AC084759.2	-	lncRNA gene	no	ENST00000557976.5	1.119	0.000	0.903	0.001(7)	0(0)	0.025(436)	non tumor-specific	nAS	yes
KIAA0930_LS002	chr22:45197948|45199873:-	KIAA0930	KIAA0930	protein coding gene	no	ENST00000336156.9;ENST00000423262.5;ENST00000251993.11;ENST00000391627.6;ENST00000488038.5;ENST00000498418.5;ENST00000474515.5;ENST00000493003.1	155.482	77.949	81.290	0.996(9543)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
PLXDC1_LS002	chr17:39070016|39072450:-	PLXDC1	plexin domain containing 1	protein coding gene	no	ENST00000315392.8;ENST00000394318.7;ENST00000578390.5;ENST00000578517.5;ENST00000493200.5;ENST00000461225.5;ENST00000444911.6	13.076	5.081	15.277	0.833(7981)	0.838(588)	0.944(16404)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNA5SP18_UP_LS0047	chr1:229037936|229197698:-	RNA5SP18	RNA, 5S ribosomal pseudogene 18	no	no	.	2.059	0.656	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LZTR1_LS0007	chr22:20993754|20993927:+	LZTR1	leucine zipper like transcription regulator 1	protein coding gene	no	.	11.001	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RIN2_LS0113	chr20:19976061|19990006:+	RIN2	Ras and Rab interactor 2	protein coding gene	no	.	3.541	1.395	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
C2orf42_LS008	chr2:70181997|70182667:-	C2orf42	chromosome 2 open reading frame 42	protein coding gene	no	ENST00000264434.6;ENST00000457952.5;ENST00000428010.5;ENST00000425268.5;ENST00000428751.5;ENST00000417203.5	1.255	1.122	4.920	0.896(8589)	0.96(674)	0.958(16652)	non tumor-specific	alt_5prime;exon_skip	yes
ARHGAP26_LS001	chr5:142770915|142873400:+	ARHGAP26	Rho GTPase activating protein 26	protein coding gene	no	ENST00000274498.9;ENST00000645722.1;ENST00000378004.8	1.323	1.053	4.583	0.741(7098)	0.856(601)	0.927(16117)	non tumor-specific	nAS	yes
PLIN3_LS002	chr19:4839536|4844668:-	PLIN3	perilipin 3	protein coding gene	no	ENST00000221957.8;ENST00000592528.5;ENST00000589163.5	166.892	88.917	66.578	0.993(9517)	0.986(692)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF140_LS019	chr12:133083561|133105510:+	ZNF140	zinc finger protein 140	protein coding gene	no	ENST00000355557.6;ENST00000356456.9;ENST00000412146.6;ENST00000544426.5;ENST00000392041.8;ENST00000429434.3;ENST00000355557.6;ENST00000356456.9;ENST00000412146.6;ENST00000544426.5;ENST00000392041.8;ENST00000429434.3	6.272	3.930	7.320	0.97(9291)	0.983(690)	0.965(16765)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
VAPB_LS004	chr20:58389517|58418211:+	VAPB	VAMP associated protein B and C	protein coding gene	no	ENST00000475243.5;ENST00000395802.7;ENST00000520497.1;ENST00000475243.5;ENST00000395802.7;ENST00000520497.1	24.058	19.026	30.379	0.985(9434)	0.994(698)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
ANKS6_LS023	chr9:98784157|98784380:-	ANKS6	ankyrin repeat and sterile alpha motif domain containing 6	protein coding gene	no	ENST00000486778.1	0.248	0.146	1.831	0.514(4923)	0.527(370)	0.448(7788)	non tumor-specific	exon_skip;intron_retention	yes
LINC00937_LS009	chr12:8383075|8385688:-	LINC00937	long intergenic non-protein coding RNA 937	lncRNA gene	no	ENST00000536560.1	0.301	0.070	1.019	0.088(840)	0.051(36)	0.186(3227)	non tumor-specific	nAS	yes
UN_DEFB135_UP_LS0010	chr8:11838573|11847702:+	DEFB135	defensin beta 135	protein coding gene	no	.	4.043	0.454	0.000	0.014(131)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC125232.2_LS006	chr2:87043984|87047188:-	AC125232.2	-	lncRNA gene	no	ENST00000648819.1	16.669	9.087	3.678	0.974(9328)	0.976(685)	0.927(16108)	non tumor-specific	nAS	yes
UN_MIR3681HG_LS0147	chr2:12553455|12571879:-	MIR3681HG	MIR3681 host gene	lncRNA gene	no	.	1.819	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM161B-AS1_LS0007	chr5:88270585|88388049:+	TMEM161B-AS1	TMEM161B antisense RNA 1	lncRNA gene	no	.	3.682	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZBTB45_LS0050	chr19:58517673|58518385:-	ZBTB45	zinc finger and BTB domain containing 45	protein coding gene	no	.	2.686	0.096	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
CENPN_LS020	chr16:81026638|81028171:+	CENPN	centromere protein N	protein coding gene	no	ENST00000305850.9;ENST00000439957.7;ENST00000393335.7;ENST00000428963.6	12.523	4.514	3.091	0.953(9130)	0.957(672)	0.912(15859)	non tumor-specific	nAS	yes
INO80C_LS014	chr18:35489385|35497719:-	INO80C	INO80 complex subunit C	protein coding gene	no	ENST00000441607.6;ENST00000586449.1;ENST00000585971.1	2.416	1.747	2.041	0.81(7763)	0.822(577)	0.838(14564)	non tumor-specific	nAS	yes
RABL6_LS010	chr9:136825826|136828494:+	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	ENST00000371671.9;ENST00000484471.6;ENST00000311502.11;ENST00000371663.10;ENST00000357466.6;ENST00000464941.5;ENST00000629216.2;ENST00000436380.5;ENST00000371671.9;ENST00000484471.6;ENST00000311502.11;ENST00000371663.10;ENST00000357466.6;ENST00000464941.5;ENST00000629216.2;ENST00000436380.5	86.709	56.924	100.565	0.994(9528)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GALNT12_LS0018	chr9:98840133|98844102:+	GALNT12	polypeptide N-acetylgalactosaminyltransferase 12	protein coding gene	no	.	24.058	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
RNF32_LS014	chr7:156641004|156642977:+	RNF32	ring finger protein 32	protein coding gene	no	ENST00000405335.5	0.567	0.128	0.647	0.049(465)	0.021(15)	0.018(317)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC2A12_LS003	chr6:134006934|134028381:-	SLC2A12	solute carrier family 2 member 12	protein coding gene	no	ENST00000275230.5	9.229	11.666	4.280	0.593(5686)	0.846(594)	0.79(13740)	non tumor-specific	nAS	yes
UN_TICAM1_UP_LS0003	chr19:4867718|4868836:-	TICAM1	toll like receptor adaptor molecule 1	protein coding gene	no	.	4.251	8.137	0.000	0.009(90)	0.013(9)	0(0)	non tumor-specific	nAS	no
ZNF200_LS007	chr16:3233836|3234987:-	ZNF200	zinc finger protein 200	protein coding gene	no	ENST00000414144.6;ENST00000575948.1	1.114	0.899	1.841	0.884(8472)	0.92(646)	0.8(13914)	non tumor-specific	alt_5prime;exon_skip	yes
SCN8A_LS036	chr12:51789418|51790398:+	SCN8A	sodium voltage-gated channel alpha subunit 8	protein coding gene	no	ENST00000354534.10;ENST00000545061.5;ENST00000355133.7;ENST00000599343.5;ENST00000627620.2;ENST00000636945.2	2.687	1.523	1.574	0.25(2392)	0.081(57)	0.365(6345)	non tumor-specific	nAS	yes
UQCRC2_LS003	chr16:21953456|21962761:+	UQCRC2	ubiquinol-cytochrome c reductase core protein 2	protein coding gene	no	ENST00000567757.1	0.006	0.005	0.640	0.142(1364)	0.124(87)	0.088(1536)	non tumor-specific	nAS	yes
FADS1_LS025	chr11:61813353|61816262:-	FADS1	fatty acid desaturase 1	protein coding gene	no	ENST00000540767.5	0.014	0.013	0.687	0.364(3491)	0.332(233)	0.081(1404)	non tumor-specific	alt_5prime	yes
UN_TNIP1_LS0038	chr5:151033124|151033608:-	TNIP1	TNFAIP3 interacting protein 1	protein coding gene	no	.	1.454	0.863	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01378_LS007	chr4:117571892|117572034:+	LINC01378	long intergenic non-protein coding RNA 1378	lncRNA gene	no	ENST00000608048.1	0.000	0.189	0.712	0(0)	0.001(1)	0(6)	non tumor-specific	nAS	yes
IFRD2_LS008	chr3:50289356|50289447:-	IFRD2	interferon related developmental regulator 2	protein coding gene	no	ENST00000438296.1	0.882	0.407	3.266	0.91(8722)	0.905(635)	0.917(15945)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZFY_LS009	chrY:2975654|2976670:+	ZFY	zinc finger protein Y-linked	protein coding gene	no	ENST00000383052.5;ENST00000625061.3;ENST00000155093.7	5.991	5.063	4.650	0.362(3468)	0.466(327)	0.614(10664)	non tumor-specific	exon_skip	yes
UN_AL109615.3_LS0009	chr6:44001116|44010654:-	AL109615.3	-	lncRNA gene	no	.	1.107	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
CTBP1_LS001	chr4:1212423|1212913:-	CTBP1	C-terminal binding protein 1	protein coding gene	no	ENST00000382952.7;ENST00000290921.10;ENST00000514596.1;ENST00000504092.5	89.363	42.865	82.873	0.948(9084)	0.927(651)	0.979(17021)	non tumor-specific	alt_3prime	yes
CRYZ_LS016	chr1:74724834|74732767:-	CRYZ	crystallin zeta	protein coding gene	no	ENST00000441120.1	0.226	0.215	0.763	0.409(3914)	0.65(456)	0.252(4385)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SKIV2L_LS041	chr6:31969316|31969515:+	SKIV2L	Ski2 like RNA helicase	protein coding gene	no	ENST00000470453.1	0.507	0.317	0.646	0.772(7401)	0.725(509)	0.039(681)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ANKRD10_LS0022	chr13:110894393|110899925:-	ANKRD10	ankyrin repeat domain 10	protein coding gene	no	.	3.251	0.908	0.000	0.016(156)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
HFM1_LS009	chr1:91276743|91276982:-	HFM1	helicase for meiosis 1	protein coding gene	no	ENST00000462405.5;ENST00000370425.7;ENST00000430465.1	2.510	0.531	1.959	0.101(966)	0.118(83)	0.663(11530)	non tumor-specific	alt_3prime	yes
UN_DYNC1H1_LS0013	chr14:102024580|102026574:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	.	2.035	0.440	0.000	0.006(58)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
TFCP2_LS015	chr12:51110983|51116315:-	TFCP2	transcription factor CP2	protein coding gene	yes	ENST00000257915.9;ENST00000549867.5;ENST00000548115.5;ENST00000548108.1	46.295	25.205	24.952	0.985(9437)	0.994(698)	0.979(17013)	non tumor-specific	nAS	yes
UN_FP236383.2_UP_LS0183	chr21:8399648|8443883:-	FP236383.2	-	lncRNA gene	no	.	329.376	55.861	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GCFC2_LS0065	chr2:75706651|75710561:-	GCFC2	GC-rich sequence DNA-binding factor 2	protein coding gene	no	.	1.042	0.153	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_PPP1R15A_UP_LS0001	chr19:48706222|48788781:+	PPP1R15A	protein phosphatase 1 regulatory subunit 15A	protein coding gene	no	.	3.145	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
BAG1_LS007	chr9:33259033|33259885:-	BAG1	BAG cochaperone 1	protein coding gene	no	ENST00000467389.6	0.016	0.057	0.642	0.815(7808)	0.869(610)	0.069(1194)	non tumor-specific	intron_retention	yes
PIWIL4_LS024	chr11:94616563|94617954:+	PIWIL4	piwi like RNA-mediated gene silencing 4	protein coding gene	no	ENST00000446230.6;ENST00000299001.10	6.185	3.127	4.498	0.45(4310)	0.52(365)	0.926(16103)	non tumor-specific	alt_5prime;intron_retention	yes
ABCF2_LS020	chr7:151226500|151226857:-	ABCF2	ATP binding cassette subfamily F member 2	protein coding gene	no	ENST00000441774.1;ENST00000441774.1	0.683	0.229	0.898	0.649(6214)	0.601(422)	0.452(7865)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ITGB8_LS0013	chr7:20356022|20363637:+	ITGB8	integrin subunit beta 8	protein coding gene	no	.	1.917	0.480	0.000	0.01(97)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
DNM1L_LS021	chr12:32711015|32713209:+	DNM1L	dynamin 1 like	protein coding gene	no	ENST00000452533.6;ENST00000553257.5;ENST00000549701.5;ENST00000358214.9;ENST00000266481.10;ENST00000551476.5;ENST00000550154.5;ENST00000547312.5;ENST00000381000.8;ENST00000549926.5;ENST00000546757.5;ENST00000452533.6;ENST00000553257.5;ENST00000549701.5;ENST00000358214.9;ENST00000266481.10;ENST00000551476.5;ENST00000550154.5;ENST00000547312.5;ENST00000381000.8;ENST00000549926.5;ENST00000546757.5	15.210	11.697	25.141	0.955(9151)	0.976(685)	0.976(16968)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SPINT1-AS1_LS0014	chr15:40838705|40844179:-	SPINT1-AS1	SPINT1 antisense RNA 1	lncRNA gene	no	.	7.505	1.850	0.000	0.051(487)	0.019(13)	0(0)	non tumor-specific	nAS	no
DENR_LS005	chr12:122753807|122762845:+	DENR	density regulated re-initiation and release factor	protein coding gene	no	.;.	2.906	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LEUTX_UP_LS0001	chr19:39685418|39706597:+	LEUTX	leucine twenty homeobox	protein coding gene	no	.	2.547	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AL135818.1_LS001	chr14:91243013|91243913:+	AL135818.1	-	lncRNA gene	no	ENST00000554096.2	0.398	0.178	0.687	0.016(149)	0.006(4)	0.024(419)	non tumor-specific	exon_skip	yes
CPM_LS020	chr12:68932840|68963169:-	CPM	carboxypeptidase M	protein coding gene	no	ENST00000546373.5	0.062	0.039	0.722	0.146(1399)	0.352(247)	0.059(1022)	non tumor-specific	nAS	yes
UN_OR5B21_UP_LS0001	chr11:58511855|58514551:-	OR5B21	olfactory receptor family 5 subfamily B member 21	protein coding gene	no	.	1.321	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC139453.1_UP_LS0002	chr3:75416844|75426450:-	AC139453.1	-	pseudogene	no	.	3.939	0.133	0.000	0.014(134)	0.019(13)	0(0)	non tumor-specific	nAS	no
ZNF35_LS009	chr3:44652701|44658701:+	ZNF35	zinc finger protein 35	protein coding gene	no	ENST00000396056.6;ENST00000415571.6	3.721	1.947	2.075	0.78(7473)	0.835(586)	0.852(14817)	non tumor-specific	exon_skip	yes
UN_EMC9_LS0002	chr14:24139476|24140247:+	EMC9	ER membrane protein complex subunit 9	protein coding gene	no	.	1.939	0.340	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
ZNF503_LS005	chr10:75283383|75401105:-	ZNF503	zinc finger protein 503	protein coding gene	no	ENST00000418818.6	0.882	0.104	0.853	0.011(101)	0.007(5)	0.118(2050)	non tumor-specific	nAS	yes
UN_KDM1A_LS0018	chr1:23059167|23071225:+	KDM1A	lysine demethylase 1A	protein coding gene	no	.	2.173	0.235	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_PIAS4_LS0096	chr19:4036530|4036588:-	PIAS4	protein inhibitor of activated STAT 4	protein coding gene	no	.	9.267	0.167	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SVIL-AS1_UP_LS0010	chr10:29354495|29355512:+	SVIL-AS1	SVIL antisense RNA 1	pseudogene	no	.	4.788	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MGAM_LS046	chr7:142065622|142065715:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000620571.1;ENST00000475668.6	6.184	5.257	1.244	0.089(857)	0.225(158)	0.275(4782)	non tumor-specific	nAS	yes
FGGY_LS028	chr1:59554227|59607803:+	FGGY	FGGY carbohydrate kinase domain containing	protein coding gene	no	ENST00000634606.1;ENST00000474476.5;ENST00000371218.8;ENST00000495718.5;ENST00000303721.11;ENST00000430447.5;ENST00000634364.1;ENST00000635297.1;ENST00000634399.1;ENST00000635156.1;ENST00000371212.5;ENST00000475949.5;ENST00000485720.1;ENST00000371210.1	21.537	18.366	9.773	0.972(9308)	0.987(693)	0.976(16963)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZDHHC17_LS009	chr12:76781683|76815146:+	ZDHHC17	zinc finger DHHC-type palmitoyltransferase 17	protein coding gene	no	ENST00000550876.1	0.255	0.000	0.724	0.001(7)	0(0)	0(6)	non tumor-specific	nAS	yes
AC092142.1_LS004	chr16:82063253|82070803:-	AC092142.1	-	lncRNA gene	no	ENST00000567021.1	0.431	0.155	0.662	0.018(168)	0.011(8)	0.022(387)	non tumor-specific	nAS	yes
UN_CYP4A22-AS1_LS0002	chr1:47098420|47156683:-	CYP4A22-AS1	CYP4A22 antisense RNA 1	lncRNA gene	no	.	1.154	0.117	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_STAU2_LS0047	chr8:73617451|73661696:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	.	1.726	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime	no
ERCC5_LS004	chr13:102821847|102822065:+	ERCC5	ERCC excision repair 5, endonuclease	protein coding gene	no	ENST00000602836.2	22.443	15.904	14.881	0.955(9154)	0.989(694)	0.963(16745)	non tumor-specific	nAS	yes
DYNC1LI2_LS010	chr16:66729099|66730112:-	DYNC1LI2	dynein cytoplasmic 1 light intermediate chain 2	protein coding gene	no	ENST00000258198.6;ENST00000443351.6;ENST00000569320.5;ENST00000567499.5;ENST00000564833.5;ENST00000565532.5;ENST00000570201.1	65.326	54.022	96.308	0.99(9486)	0.996(699)	0.979(17020)	non tumor-specific	nAS	yes
UN_AC012433.1_UP_LS0003	chr18:50559843|50663089:+	AC012433.1	-	pseudogene	no	.	1.334	0.322	0.000	0.031(294)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_RPAP2_LS0031	chr1:92358043|92380724:+	RPAP2	RNA polymerase II associated protein 2	protein coding gene	no	.	1.061	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LBX1_LS001	chr10:101227790|101228491:-	LBX1	ladybird homeobox 1	protein coding gene	no	ENST00000370193.3	1.133	0.031	4.276	0.102(976)	0.064(45)	0.095(1653)	non tumor-specific	nAS	yes
CMYA5_LS003	chr5:79743922|79745222:+	CMYA5	cardiomyopathy associated 5	protein coding gene	no	ENST00000446378.2;ENST00000506603.5	7.213	6.132	7.487	0.301(2885)	0.584(410)	0.917(15933)	non tumor-specific	nAS	yes
ZPLD1_LS005	chr3:102228414|102229141:+	ZPLD1	zona pellucida like domain containing 1	protein coding gene	no	ENST00000491959.5	3.591	0.477	0.669	0.018(169)	0.013(9)	0.037(648)	non tumor-specific	exon_skip	yes
GLCCI1_LS020	chr7:8085017|8086193:+	GLCCI1	glucocorticoid induced 1	protein coding gene	no	ENST00000223145.9;ENST00000491947.1	15.618	10.374	6.247	0.916(8775)	0.966(678)	0.953(16559)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
PRKCH_LS017	chr14:61391288|61445692:+	PRKCH	protein kinase C eta	protein coding gene	no	ENST00000553726.5	0.063	0.001	0.675	0.041(393)	0.068(48)	0.035(602)	non tumor-specific	exon_skip	yes
DCST2_LS010	chr1:155026402|155026548:-	DCST2	DC-STAMP domain containing 2	protein coding gene	no	ENST00000485982.5;ENST00000368423.5;ENST00000368424.3;ENST00000498036.1	0.846	0.345	3.970	0.409(3919)	0.242(170)	0.869(15102)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MIR4678_UP_LS0004	chr10:87386275|87389129:+	MIR4678	microRNA 4678	small non-coding RNA gene	no	.	1.789	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL8_LS0065	chr8:144790465|144791274:+	RPL8	ribosomal protein L8	protein coding gene	no	.	22.947	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
STYXL1_LS019	chr7:76030524|76047662:-	STYXL1	serine/threonine/tyrosine interacting like 1	protein coding gene	no	ENST00000360591.7;ENST00000248600.5;ENST00000360591.7;ENST00000248600.5	2.634	1.220	1.332	0.74(7091)	0.792(556)	0.69(11996)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PDE1B_LS006	chr12:54561637|54566974:+	PDE1B	phosphodiesterase 1B	protein coding gene	no	ENST00000394277.7;ENST00000550620.1;ENST00000542335.5	2.463	2.259	4.311	0.488(4674)	0.748(525)	0.796(13836)	non tumor-specific	nAS	yes
TARS2_LS007	chr1:150490725|150491394:+	TARS2	threonyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000369054.6;ENST00000369064.7;ENST00000606933.5	16.508	8.785	17.384	0.99(9481)	0.997(700)	0.978(16999)	non tumor-specific	exon_skip;intron_retention	yes
UN_RNF168_LS0015	chr3:196470453|196470533:-	RNF168	ring finger protein 168	protein coding gene	no	.	15.401	1.475	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00963_LS0031	chr9:129502704|129504312:-	LINC00963	long intergenic non-protein coding RNA 963	lncRNA gene	no	.	1.392	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCDC151_LS0012	chr19:11424014|11430474:+	CCDC151	coiled-coil domain containing 151	protein coding gene	no	.	1.023	0.104	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAJC27_LS008	chr2:24957974|24963405:-	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27	protein coding gene	no	ENST00000264711.6;ENST00000534855.5;ENST00000494239.5;ENST00000468750.5	1.068	0.613	2.815	0.594(5690)	0.764(536)	0.871(15148)	non tumor-specific	exon_skip	yes
MBIP_LS012	chr14:36314608|36314691:-	MBIP	MAP3K12 binding inhibitory protein 1	protein coding gene	no	ENST00000416007.8;ENST00000621657.4;ENST00000318473.11;ENST00000359527.11;ENST00000605579.5;ENST00000604336.5;ENST00000603139.1	22.229	18.359	38.292	0.987(9453)	0.997(700)	0.977(16977)	non tumor-specific	nAS	yes
UN_SYDE2_LS0022	chr1:85200039|85200252:-	SYDE2	synapse defective Rho GTPase homolog 2	protein coding gene	no	.	1.216	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ASPG_LS005	chr14:104097637|104098853:+	ASPG	asparaginase	protein coding gene	no	ENST00000551177.5;ENST00000548372.5;ENST00000546892.6	3.697	11.789	2.124	0.145(1386)	0.516(362)	0.495(8610)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MMP8_LS0002	chr11:102723081|102724754:-	MMP8	matrix metallopeptidase 8	protein coding gene	no	.	2.121	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRAK1_LS003	chr3:42091560|42125420:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	ENST00000327628.9	1.044	0.902	2.182	0.587(5627)	0.761(534)	0.638(11089)	non tumor-specific	exon_skip	yes
UN_BIN2P2_UP_LS0011	chr5:75717768|75719935:+	BIN2P2	bridging integrator 2 pseudogene 2	pseudogene	no	.	1.189	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC22A23_LS0049	chr6:3363725|3410188:-	SLC22A23	solute carrier family 22 member 23	protein coding gene	no	.	2.014	1.004	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
L3MBTL3_LS028	chr6:130133621|130133843:+	L3MBTL3	L3MBTL histone methyl-lysine binding protein 3	protein coding gene	no	ENST00000529410.5;ENST00000361794.6;ENST00000533560.5;ENST00000368139.6;ENST00000526019.5;ENST00000368136.2	15.027	10.148	11.012	0.934(8948)	0.969(680)	0.976(16960)	non tumor-specific	nAS	yes
TEAD3_LS019	chr6:35480374|35484560:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	ENST00000338863.11;ENST00000338863.11	40.211	34.907	29.563	0.935(8955)	0.99(695)	0.933(16220)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
MIR3681HG_LS008	chr2:12106951|12131306:+	MIR3681HG	MIR3681 host gene	lncRNA gene	no	ENST00000451644.5;ENST00000449986.1	1.432	0.271	0.786	0.071(679)	0.004(3)	0.033(582)	non tumor-specific	nAS	yes
DZIP1_LS012	chr13:95606059|95609457:-	DZIP1	DAZ interacting zinc finger protein 1	protein coding gene	no	ENST00000347108.7;ENST00000376829.6;ENST00000466569.1	11.404	10.335	10.612	0.61(5844)	0.771(541)	0.911(15833)	non tumor-specific	exon_skip	yes
CTNNBL1_LS029	chr20:37842419|37859899:+	CTNNBL1	catenin beta like 1	protein coding gene	no	ENST00000621317.4;ENST00000405275.6;ENST00000361383.10;ENST00000628103.2;ENST00000373473.5;ENST00000473857.5;ENST00000373469.1;ENST00000472237.5;ENST00000621317.4;ENST00000405275.6;ENST00000361383.10;ENST00000628103.2;ENST00000373473.5;ENST00000473857.5;ENST00000373469.1;ENST00000472237.5	179.781	83.675	65.242	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UBA2_LS019	chr19:34454556|34458769:+	UBA2	ubiquitin like modifier activating enzyme 2	protein coding gene	no	ENST00000586313.1;ENST00000246548.8;ENST00000439527.6	117.434	52.025	73.935	0.993(9518)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
HNRNPD_LS012	chr4:82355401|82356799:-	HNRNPD	heterogeneous nuclear ribonucleoprotein D	protein coding gene	no	.;.	17.187	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
KCNK2_LS008	chr1:215086678|215169199:+	KCNK2	potassium two pore domain channel subfamily K member 2	protein coding gene	no	ENST00000486921.5;ENST00000470177.5	0.056	0.076	1.232	0.16(1536)	0.245(172)	0.31(5391)	non tumor-specific	exon_skip	yes
UN_ENTPD5_LS0052	chr14:73996776|74007696:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.	1.179	0.276	0.000	0.013(129)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_MERTK_LS0041	chr2:112010066|112012571:+	MERTK	MER proto-oncogene, tyrosine kinase	protein coding gene	yes	.	0.841	0.146	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
HDAC2_LS014	chr6:113958766|113959906:-	HDAC2	histone deacetylase 2	protein coding gene	no	ENST00000519065.5;ENST00000519108.5;ENST00000368632.6;ENST00000425835.6;ENST00000523628.5;ENST00000521610.5;ENST00000522371.5;ENST00000521163.5;ENST00000518690.5;ENST00000523240.5;ENST00000521233.1;ENST00000520895.5;ENST00000524334.1	92.904	54.688	39.816	0.99(9487)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime	yes
SCRN1_LS013	chr7:29969068|29990182:-	SCRN1	secernin 1	protein coding gene	no	ENST00000434476.6	0.037	0.046	0.765	0.148(1421)	0.172(121)	0.042(734)	non tumor-specific	nAS	yes
AZIN1-AS1_LS006	chr8:102864623|102879895:+	AZIN1-AS1	macrophage interferon regulatory lncRNA	lncRNA gene	no	ENST00000520750.6;ENST00000522939.1;ENST00000518978.5;ENST00000520538.1	0.465	0.319	3.093	0.905(8673)	0.916(643)	0.899(15626)	non tumor-specific	alt_3prime	yes
EDAR_LS008	chr2:108923453|108929198:-	EDAR	ectodysplasin A receptor	protein coding gene	no	ENST00000409271.5;ENST00000258443.6;ENST00000376651.1	5.081	2.570	1.283	0.227(2178)	0.332(233)	0.162(2819)	non tumor-specific	exon_skip	yes
UN_GORASP2_LS0023	chr2:170954781|170956432:+	GORASP2	golgi reassembly stacking protein 2	protein coding gene	no	.	1.136	0.045	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FBXO8_LS0003	chr4:174241218|174262764:-	FBXO8	F-box protein 8	protein coding gene	no	.	4.131	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MUC5B_LS0182	chr11:1247304|1248976:-	MUC5B	mucin 5B, oligomeric mucus/gel-forming	protein coding gene	no	.	9.330	11.457	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
SHC2_LS013	chr19:436431|436630:-	SHC2	SHC adaptor protein 2	protein coding gene	no	ENST00000264554.10;ENST00000590222.5;ENST00000590113.4	45.883	26.389	27.632	0.897(8593)	0.984(691)	0.927(16109)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TMEM132E_LS0006	chr17:34592589|34626127:+	TMEM132E	transmembrane protein 132E	protein coding gene	no	.	0.771	0.191	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BX890604.2_LS0090	chrX:3826729|3866922:-	BX890604.2	-	lncRNA gene	no	.	3.555	0.194	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC22A15_LS016	chr1:116032800|116035187:+	SLC22A15	solute carrier family 22 member 15	protein coding gene	no	ENST00000481127.1;ENST00000481127.1	0.368	0.283	0.837	0.138(1323)	0.207(145)	0.24(4171)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC012593.1_LS0008	chr2:34944892|34987411:-	AC012593.1	-	lncRNA gene	no	.	6.510	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
EZH2_LS004	chr7:148810414|148811625:-	EZH2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein coding gene	yes	ENST00000492143.5;ENST00000478654.5;ENST00000460911.5;ENST00000350995.6;ENST00000320356.6;ENST00000476773.5;ENST00000483967.5;ENST00000469631.1	46.258	5.316	6.913	0.992(9508)	0.917(644)	0.964(16759)	non tumor-specific	exon_skip;intron_retention	yes
UN_EEF2_LS0117	chr19:3976574|3980124:+	EEF2	eukaryotic translation elongation factor 2	protein coding gene	no	.	0.767	0.648	0.000	0.021(203)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_COG4_LS0024	chr16:70497387|70500958:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	.	1.987	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_VPS53_LS0059	chr17:513918|514057:+	VPS53	VPS53 subunit of GARP complex	protein coding gene	yes	.	3.209	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ADAM15_LS018	chr1:155054506|155055702:+	ADAM15	ADAM metallopeptidase domain 15	protein coding gene	no	ENST00000480331.5	2.066	0.836	0.804	0.288(2763)	0.167(117)	0.274(4757)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF226_LS006	chr19:44165188|44165757:+	ZNF226	zinc finger protein 226	protein coding gene	no	.;.	1.299	0.517	0.000	0.008(74)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC00589_LS0011	chr8:29679565|29724877:-	LINC00589	long intergenic non-protein coding RNA 589	lncRNA gene	no	.	7.101	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC005746.2_LS0002	chr17:61367704|61399239:-	AC005746.2	-	lncRNA gene	no	.	2.336	0.633	0.000	0.024(230)	0.063(44)	0(0)	non tumor-specific	nAS	no
UN_SDE2_LS0017	chr1:225985523|225987892:-	SDE2	SDE2 telomere maintenance homolog	protein coding gene	no	.	3.002	0.439	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
SH3YL1_LS041	chr2:253115|263984:-	SH3YL1	SH3 and SYLF domain containing 1	protein coding gene	no	ENST00000403712.6;ENST00000356150.9	9.779	18.481	9.643	0.758(7262)	0.899(631)	0.501(8716)	non tumor-specific	exon_skip	yes
TARBP1_LS005	chr1:234393486|234393646:-	TARBP1	TAR (HIV-1) RNA binding protein 1	protein coding gene	no	ENST00000040877.1;ENST00000462259.5	70.139	20.704	56.042	0.997(9553)	0.99(695)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SH3KBP1_LS0017	chrX:19645475|19647513:-	SH3KBP1	SH3 domain containing kinase binding protein 1	protein coding gene	no	.	3.733	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_HEATR1_LS0002	chr1:236549251|236550140:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	.	1.301	0.129	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_HPS3_LS0028	chr3:149163949|149167088:+	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	.	3.610	0.691	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC021683.2_LS0014	chr17:77548708|77560470:+	AC021683.2	-	lncRNA gene	no	.	2.139	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
NUTM1_LS005	chr15:34350832|34353736:+	NUTM1	NUT midline carcinoma family member 1	protein coding gene	yes	ENST00000537011.5;ENST00000614490.4;ENST00000438749.7;ENST00000333756.4	1.993	0.000	0.648	0.007(68)	0(0)	0.021(361)	non tumor-specific	nAS	yes
KDELC2_LS007	chr11:108479495|108481180:-	KDELC2	protein O-glucosyltransferase 3	protein coding gene	no	ENST00000323468.9;ENST00000434945.6;ENST00000530529.5	26.046	18.369	10.589	0.941(9020)	0.983(690)	0.946(16448)	non tumor-specific	exon_skip	yes
ADGRG3_LS011	chr16:57680617|57683932:+	ADGRG3	adhesion G protein-coupled receptor G3	protein coding gene	no	ENST00000333493.8;ENST00000450388.7	2.529	1.021	2.024	0.18(1721)	0.301(211)	0.585(10172)	non tumor-specific	exon_skip	yes
UN_DAB1_LS0163	chr1:58542515|58544843:-	DAB1	DAB adaptor protein 1	protein coding gene	no	.	1.158	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01481_LS006	chr12:70242893|70243312:-	LINC01481	progenitor renewal associated non-coding RNA	lncRNA gene	no	ENST00000549419.5;ENST00000553135.1	4.754	2.156	5.955	0.87(8335)	0.856(601)	0.962(16725)	non tumor-specific	nAS	yes
UN_RUNX2_LS0023	chr6:45536261|45546827:+	RUNX2	RUNX family transcription factor 2	protein coding gene	yes	.	1.391	0.309	0.000	0.007(63)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TEX41_LS021	chr2:144768280|145113221:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000597469.5;ENST00000627675.2;ENST00000630651.2;ENST00000625671.2	0.061	0.000	0.774	0.001(5)	0(0)	0(2)	non tumor-specific	nAS	yes
CALCOCO1_LS032	chr12:53725258|53727404:-	CALCOCO1	calcium binding and coiled-coil domain 1	protein coding gene	no	ENST00000551900.5	0.028	0.066	0.982	0.638(6113)	0.813(571)	0.516(8961)	non tumor-specific	alt_3prime	yes
TTC27_LS018	chr2:32766549|32777882:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000433416.5	0.266	0.006	0.646	0.002(15)	0.001(1)	0.014(241)	non tumor-specific	exon_skip	yes
AFP_LS007	chr4:73440813|73442296:+	AFP	alpha fetoprotein	protein coding gene	no	ENST00000395792.6;ENST00000226359.2	16.476	5.308	0.972	0.039(373)	0.047(33)	0.015(259)	non tumor-specific	alt_3prime	yes
UN_THUMPD2_LS0004	chr2:39737078|39740897:+	THUMPD2	THUMP domain containing 2	protein coding gene	no	.	3.012	0.415	0.000	0.008(75)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM85B_LS003	chr8:8220182|8223826:-	FAM85B	family with sequence similarity 85 member B	lncRNA gene	no	ENST00000519726.2	0.546	0.228	0.758	0.013(123)	0.033(23)	0.158(2745)	non tumor-specific	nAS	yes
IL1R1_LS019	chr2:102154017|102164774:+	IL1R1	interleukin 1 receptor type 1	protein coding gene	no	ENST00000428279.5;ENST00000428279.5	0.205	0.423	1.429	0.154(1473)	0.4(281)	0.516(8964)	non tumor-specific	alt_3prime;exon_skip	yes
ITGA8_LS025	chr10:15672749|15677592:-	ITGA8	integrin subunit alpha 8	protein coding gene	no	ENST00000378076.3	5.039	8.681	3.210	0.351(3367)	0.766(538)	0.715(12425)	non tumor-specific	nAS	yes
UN_TAT_LS0001	chr16:71565666|71566051:+	TAT	tyrosine aminotransferase	protein coding gene	yes	.	1.400	0.274	0.000	0.003(32)	0.009(6)	0(0)	non tumor-specific	nAS	no
SH3D19_LS015	chr4:151159352|151165589:-	SH3D19	SH3 domain containing 19	protein coding gene	no	ENST00000409598.8;ENST00000304527.8;ENST00000409252.6;ENST00000478503.6;ENST00000514152.5;ENST00000604030.6	32.857	43.476	50.808	0.937(8979)	0.989(694)	0.943(16385)	non tumor-specific	exon_skip	yes
UN_ZFYVE28_LS0008	chr4:2271779|2272116:-	ZFYVE28	zinc finger FYVE-type containing 28	protein coding gene	no	.	1.188	0.715	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_ELOVL5_LS0010	chr6:53291963|53292058:-	ELOVL5	ELOVL fatty acid elongase 5	protein coding gene	no	.	6.371	0.846	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ZBED9_LS003	chr6:28579419|28586298:-	ZBED9	zinc finger BED-type containing 9	protein coding gene	no	ENST00000452236.2	2.215	1.123	0.873	0.348(3337)	0.547(384)	0.272(4732)	non tumor-specific	alt_5prime	yes
UN_DLGAP1_LS0191	chr18:4289326|4293160:+	DLGAP1	DLG associated protein 1	protein coding gene	no	.	3.961	0.313	0.000	0.015(140)	0.007(5)	0(0)	non tumor-specific	nAS	no
HPRT1_LS002	chrX:134460535|134473359:+	HPRT1	hypoxanthine phosphoribosyltransferase 1	protein coding gene	no	ENST00000462974.5	0.006	0.007	0.662	0.425(4074)	0.359(252)	0.036(620)	non tumor-specific	alt_5prime	yes
UN_ALOX15B_LS0016	chr17:8047803|8047851:-	ALOX15B	arachidonate 15-lipoxygenase type B	protein coding gene	yes	.	5.207	4.220	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC39A7_LS0005	chr6:33200938|33201194:+	SLC39A7	solute carrier family 39 member 7	protein coding gene	no	.	2.870	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_SUCLA2_LS0062	chr13:48037836|48037959:-	SUCLA2	succinate-CoA ligase ADP-forming subunit beta	protein coding gene	no	.	0.568	0.088	0.000	0.019(185)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
UN_EDEM3_LS0002	chr1:184692912|184693374:-	EDEM3	ER degradation enhancing alpha-mannosidase like protein 3	protein coding gene	no	.	6.735	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
OOSP4B_LS001	chr11:60025005|60029782:+	OOSP4B	oocyte secreted protein family member 4B	protein coding gene	no	ENST00000644647.1;ENST00000642343.1;ENST00000534388.2	2.940	0.000	0.725	0.002(19)	0(0)	0.005(87)	non tumor-specific	nAS	yes
UN_AMOTL2_LS0005	chr3:134356631|134356797:+	AMOTL2	angiomotin like 2	protein coding gene	no	.	1.909	0.501	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CTDSPL2_LS0007	chr15:44484334|44486551:+	CTDSPL2	CTD small phosphatase like 2	protein coding gene	no	.	1.786	0.199	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_E4F1_LS0020	chr16:2232364|2232461:+	E4F1	E4F transcription factor 1	protein coding gene	no	.	1.957	0.343	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
MPDU1_LS011	chr17:7585797|7586692:+	MPDU1	mannose-P-dolichol utilization defect 1	protein coding gene	no	ENST00000570458.5;ENST00000570458.5	0.167	0.269	0.856	0.819(7846)	0.883(620)	0.388(6750)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SAMD11_LS0028	chr1:943808|943893:+	SAMD11	sterile alpha motif domain containing 11	protein coding gene	no	.	9.956	1.952	0.000	0.019(182)	0.031(22)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NCOA3_LS0060	chr20:47635980|47636314:+	NCOA3	nuclear receptor coactivator 3	protein coding gene	yes	.	1.623	0.204	0.000	0.011(102)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
PSMB1_LS003	chr6:170535405|170537234:-	PSMB1	proteasome 20S subunit beta 1	protein coding gene	no	ENST00000262193.6;ENST00000462957.1;ENST00000262193.6;ENST00000462957.1	654.043	299.794	398.278	0.967(9269)	0.967(679)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MLLT10_LS001	chr10:21524775|21534645:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	ENST00000631589.1	3.513	0.000	0.696	0.001(13)	0(0)	0.099(1728)	non tumor-specific	nAS	yes
GRAMD2A_LS002	chr15:72162012|72162273:-	GRAMD2A	GRAM domain containing 2A	protein coding gene	no	ENST00000309731.11;ENST00000567662.5;ENST00000565233.5;ENST00000564773.1	3.786	4.721	3.246	0.609(5835)	0.759(533)	0.565(9814)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SIPA1L1_LS030	chr14:71589370|71618757:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000381232.7;ENST00000555818.5;ENST00000358550.6	9.751	9.201	11.937	0.916(8773)	0.976(685)	0.966(16785)	non tumor-specific	exon_skip	yes
UN_AOAH_LS0038	chr7:36608478|36616380:-	AOAH	acyloxyacyl hydrolase	protein coding gene	no	.	2.472	0.255	0.000	0.018(173)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
SEC14L1_LS489	chr17:77216244|77216336:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	3.985	0.833	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_MUC6_UP_LS0013	chr11:1068148|1073265:-	MUC6	mucin 6, oligomeric mucus/gel-forming	protein coding gene	no	.	1.365	0.731	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALG13_LS065	chrX:111736879|111744668:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000394780.7;ENST00000610588.4;ENST00000470971.5;ENST00000623148.3	6.327	2.667	14.618	0.843(8072)	0.882(619)	0.974(16924)	non tumor-specific	exon_skip	yes
UN_TRAC_UP_LS0026	chr14:22495966|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	5.247	1.537	0.000	0.123(1179)	0.115(81)	0(0)	non tumor-specific	nAS	no
NLRP13_LS001	chr19:55892121|55895992:-	NLRP13	NLR family pyrin domain containing 13	protein coding gene	no	ENST00000588751.5	0.001	0.000	0.615	0(1)	0(0)	0(7)	non tumor-specific	alt_5prime	yes
CARM1_LS010	chr19:10908747|10909103:+	CARM1	coactivator associated arginine methyltransferase 1	protein coding gene	no	ENST00000590699.5	0.049	0.441	0.645	0.556(5326)	0.52(365)	0.005(95)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
TOP1MT_LS031	chr8:143332601|143333796:-	TOP1MT	DNA topoisomerase I mitochondrial	protein coding gene	no	ENST00000524092.1	0.031	0.031	0.685	0.139(1332)	0.135(95)	0.025(440)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FP671120.4_UP_LS0164	chr21:8393855|8438067:-	FP671120.4	-	lncRNA gene	no	.	292.412	44.175	0.000	0.02(193)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_SYNPO_LS0117	chr5:150649821|150649859:-	SYNPO	synaptopodin	protein coding gene	no	.	4.705	0.835	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC118553.2_LS0031	chr1:100037949|100038103:+	AC118553.2	-	protein coding gene	no	.	1.337	0.050	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NKD2_LS0026	chr5:1036384|1036552:+	NKD2	NKD inhibitor of WNT signaling pathway 2	protein coding gene	no	.	1.507	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARF3_LS0098	chr12:48938811|48941063:+	ARF3	ADP ribosylation factor 3	protein coding gene	no	.	2.143	0.098	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_B4GALT1_LS0117	chr9:33112308|33112376:+	B4GALT1	beta-1,4-galactosyltransferase 1	protein coding gene	no	.	4.112	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC096677.1_LS0011	chr1:201507419|201533428:+	AC096677.1	-	lncRNA gene	no	.	2.109	0.487	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_C1QA_LS0005	chr1:22636702|22637067:+	C1QA	complement C1q A chain	protein coding gene	no	.	4.061	0.001	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CTNNA1_LS003	chr5:138653122|138723467:+	CTNNA1	catenin alpha 1	protein coding gene	no	ENST00000517980.5	0.265	0.138	1.249	0.05(483)	0.011(8)	0.109(1896)	non tumor-specific	exon_skip	yes
APOPT1_LS017	chr14:103587364|103607204:+	APOPT1	cytochrome c oxidase assembly factor 8	protein coding gene	no	ENST00000474271.1	0.244	0.102	0.657	0.338(3239)	0.302(212)	0.036(627)	non tumor-specific	nAS	yes
UN_POLR3KP1_UP_LS0005	chr13:59119083|59120689:-	POLR3KP1	RNA polymerase III subunit K pseudogene 1	pseudogene	no	.	1.053	0.859	0.000	0.001(12)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_UNC5C_LS0004	chr4:95206796|95218969:-	UNC5C	unc-5 netrin receptor C	protein coding gene	yes	.	1.014	0.138	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RHBDF1_LS0033	chr16:65020|72513:-	RHBDF1	rhomboid 5 homolog 1	protein coding gene	no	.	1.251	0.306	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
SOX2-OT_LS033	chr3:181610929|181790673:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000498226.5	0.265	0.029	0.904	0.044(417)	0.004(3)	0.02(339)	non tumor-specific	nAS	yes
CR1_LS026	chr1:207552143|207552752:+	CR1	complement C3b/C4b receptor 1 (Knops blood group)	protein coding gene	no	ENST00000367050.8;ENST00000367051.6;ENST00000367052.6;ENST00000534202.5;ENST00000367049.8	1.449	1.018	1.019	0.135(1289)	0.33(232)	0(6)	non tumor-specific	exon_skip	yes
PNPLA6_LS009	chr19:7535202|7535509:+	PNPLA6	patatin like phospholipase domain containing 6	protein coding gene	no	ENST00000450331.7	0.244	0.100	0.754	0.011(110)	0.019(13)	0.232(4027)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
BPNT1_LS003	chr1:220059791|220062757:-	BPNT1	3'(2'), 5'-bisphosphate nucleotidase 1	protein coding gene	no	ENST00000544404.5;ENST00000414869.6;ENST00000322067.11;ENST00000469520.6;ENST00000354807.7	68.125	45.524	22.655	0.997(9552)	0.997(700)	0.978(17000)	non tumor-specific	exon_skip	yes
SLC16A2_LS004	chrX:74524809|74525750:+	SLC16A2	solute carrier family 16 member 2	protein coding gene	no	ENST00000587091.5;ENST00000636771.1;ENST00000590447.1	14.624	21.899	9.847	0.828(7929)	0.98(688)	0.918(15950)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_ARL3_LS0029	chr10:102710235|102714148:-	ARL3	ADP ribosylation factor like GTPase 3	protein coding gene	no	.	0.716	0.163	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FGFR4_LS0026	chr5:177096355|177096604:+	FGFR4	fibroblast growth factor receptor 4	protein coding gene	yes	.	6.536	1.117	0.000	0.008(79)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
LINC00339_LS011	chr1:22027780|22030280:+	LINC00339	long intergenic non-protein coding RNA 339	lncRNA gene	no	ENST00000634451.2	4.699	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_DENND2C_LS0028	chr1:114645559|114654704:-	DENND2C	DENN domain containing 2C	protein coding gene	no	.	1.313	0.586	0.000	0.047(449)	0.084(59)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
STARD13-IT1_LS001	chr13:33158778|33164150:-	STARD13-IT1	STARD13 intronic transcript 1	lncRNA gene	no	ENST00000456087.1	4.586	0.015	0.698	0.005(49)	0.004(3)	0.003(54)	non tumor-specific	nAS	yes
UN_ZNF350_LS0005	chr19:51966214|51967258:-	ZNF350	zinc finger protein 350	protein coding gene	no	.	1.032	0.549	0.000	0.08(766)	0.093(65)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_KISS1R_LS0013	chr19:920106|920493:+	KISS1R	KISS1 receptor	protein coding gene	no	.	1.560	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPS27AP15_UP_LS0045	chr9:72841202|72841428:-	RPS27AP15	RPS27A pseudogene 15	pseudogene	no	.	1.524	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
G6PC_LS006	chr17:42909418|42910915:+	G6PC	glucose-6-phosphatase catalytic subunit	protein coding gene	no	ENST00000592383.5;ENST00000253801.6	22.039	57.881	1.125	0.085(818)	0.258(181)	0.063(1094)	non tumor-specific	alt_3prime;exon_skip	yes
ZBTB44_LS018	chr11:130236216|130237010:-	ZBTB44	zinc finger and BTB domain containing 44	protein coding gene	no	ENST00000445008.6	0.580	0.014	0.787	0.003(28)	0.003(2)	0.363(6311)	non tumor-specific	alt_5prime;exon_skip	yes
DSE_LS014	chr6:116369927|116370115:+	DSE	dermatan sulfate epimerase	protein coding gene	no	ENST00000645959.1;ENST00000449314.5;ENST00000453463.1	0.321	0.185	0.678	0.031(295)	0.095(67)	0.101(1754)	non tumor-specific	nAS	yes
UN_C1QTNF3-AMACR_LS0066	chr5:34052110|34064263:-	C1QTNF3-AMACR	C1QTNF3-AMACR readthrough (NMD candidate)	protein coding gene	no	.	2.201	0.735	0.000	0.117(1123)	0.088(62)	0(0)	non tumor-specific	nAS	no
UN_UQCC1_LS0048	chr20:35394196|35411915:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	.	1.366	0.026	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
LYSMD4_LS011	chr15:99729731|99731718:-	LYSMD4	LysM domain containing 4	protein coding gene	no	ENST00000409796.5;ENST00000409796.5;ENST00000409796.5	4.040	2.728	3.953	0.813(7791)	0.929(652)	0.889(15444)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC004448.3_LS001	chr17:19411803|19412570:-	AC004448.3	-	lncRNA gene	no	ENST00000579897.1	0.409	0.141	2.007	0.026(247)	0.05(35)	0.07(1217)	non tumor-specific	nAS	yes
UN_IGLC2_UP_LS0122	chr22:22829964|22900976:+	IGLC2	immunoglobulin lambda constant 2	no	no	.	337.034	87.584	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
NEK8_LS015	chr17:28737736|28738095:+	NEK8	NIMA related kinase 8	protein coding gene	no	.;.;.	0.671	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
COL18A1_LS032	chr21:45490871|45491225:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8;ENST00000342220.9	207.191	184.418	140.117	0.988(9470)	0.996(699)	0.978(17006)	non tumor-specific	nAS	yes
UN_FILNC1_LS0006	chr6:139745439|139771073:+	FILNC1	FOXO induced long non-coding RNA 1	lncRNA gene	no	.	4.168	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GTF2IP13_LS0017	chr7:45795198|45797478:+	GTF2IP13	general transcription factor IIi pseudogene 13	pseudogene	no	.	1.958	0.394	0.000	0.038(365)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_TARS_LS0015	chr5:33466207|33466871:+	TARS	threonyl-tRNA synthetase 1	protein coding gene	no	.	5.523	0.687	0.000	0.018(174)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NABP1_LS0004	chr2:191682017|191682497:+	NABP1	nucleic acid binding protein 1	protein coding gene	no	.	6.273	0.594	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_MAP3K10_LS0010	chr19:40198590|40204485:+	MAP3K10	mitogen-activated protein kinase kinase kinase 10	protein coding gene	no	.	10.647	0.174	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FP236383.2_UP_LS0024	chr21:8397094|8441152:-	FP236383.2	-	lncRNA gene	no	.	543.522	15.299	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC097658.2_LS0006	chr4:143294729|143329279:+	AC097658.2	-	lncRNA gene	no	.	1.078	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP4R1_LS0036	chr18:9613710|9614248:+	PPP4R1	protein phosphatase 4 regulatory subunit 1	protein coding gene	no	.	1.630	0.198	0.000	0.01(92)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CDK17_LS0020	chr12:96334865|96348399:-	CDK17	cyclin dependent kinase 17	protein coding gene	no	.	0.613	0.075	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ATP8B4_LS0012	chr15:49879459|49883264:-	ATP8B4	ATPase phospholipid transporting 8B4 (putative)	protein coding gene	no	.	1.534	0.137	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ZNF487_LS0017	chr10:43454195|43475721:+	ZNF487	zinc finger protein 487	protein coding gene	no	.	0.978	0.426	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
RGN_LS009	chrX:47084600|47089776:+	RGN	regucalcin	protein coding gene	no	ENST00000397180.5;ENST00000352078.8;ENST00000336169.3	19.011	51.735	8.827	0.575(5510)	0.929(652)	0.888(15441)	non tumor-specific	exon_skip	yes
TTC6_LS052	chr14:37968588|38041258:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000533625.5	2.577	1.065	1.000	0.004(38)	0.003(2)	0.045(783)	non tumor-specific	nAS	yes
AC000123.1_LS001	chr7:127350517|127351398:+	AC000123.1	-	lncRNA gene	no	ENST00000418215.1	0.426	0.084	0.642	0.033(314)	0.04(28)	0.019(325)	non tumor-specific	nAS	yes
UN_LINC01664_UP_LS0003	chr22:17047426|17097062:+	LINC01664	long intergenic non-protein coding RNA 1664	lncRNA gene	no	.	1.994	0.737	0.000	0.041(394)	0.048(34)	0(0)	non tumor-specific	nAS	no
UN_RFPL2_LS0007	chr22:32196204|32202333:-	RFPL2	ret finger protein like 2	protein coding gene	no	.	2.836	0.355	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_SYT4_UP_LS0009	chr18:43708194|43734185:-	SYT4	synaptotagmin 4	protein coding gene	no	.	2.329	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DCHS2_LS010	chr4:154305231|154315748:-	DCHS2	dachsous cadherin-related 2	protein coding gene	no	ENST00000357232.9;ENST00000623607.4	2.638	0.747	1.141	0.08(769)	0.094(66)	0.22(3827)	non tumor-specific	nAS	yes
UN_LINC02261_UP_LS0006	chr4:27103128|27138930:+	LINC02261	long intergenic non-protein coding RNA 2261	lncRNA gene	no	.	3.739	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_USP8_LS0009	chr15:50462322|50476849:+	USP8	ubiquitin specific peptidase 8	protein coding gene	no	.	0.640	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
GOLGB1_LS018	chr3:121702595|121714861:-	GOLGB1	golgin B1	protein coding gene	no	ENST00000340645.9;ENST00000393667.7;ENST00000614479.4;ENST00000482512.5;ENST00000494517.5;ENST00000489400.1	10.862	8.292	12.926	0.852(8167)	0.93(653)	0.952(16539)	non tumor-specific	alt_3prime;exon_skip	yes
AC099489.1_LS035	chr16:11435879|11439489:-	AC099489.1	-	protein coding gene	no	ENST00000598234.6	2.488	0.000	0.893	0.006(61)	0(0)	0.333(5794)	non tumor-specific	exon_skip	yes
UN_BCL2L2-PABPN1_LS0064	chr14:23321654|23321713:+	BCL2L2-PABPN1	BCL2L2-PABPN1 readthrough	protein coding gene	no	.	1.685	0.126	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDH1L2_LS013	chr12:105050707|105052090:-	ALDH1L2	aldehyde dehydrogenase 1 family member L2	protein coding gene	no	ENST00000549335.5	0.174	0.100	1.185	0.109(1047)	0.067(47)	0.477(8297)	non tumor-specific	alt_3prime	yes
AL023755.1_LS012	chr1:168494143|168495588:-	AL023755.1	-	lncRNA gene	no	ENST00000636459.1	3.044	0.503	1.274	0.03(283)	0.017(12)	0.02(348)	non tumor-specific	nAS	yes
TBC1D3C_LS005	chr17:38061189|38061903:-	TBC1D3C	TBC1 domain family member 3C	protein coding gene	yes	ENST00000622206.1	0.821	0.392	0.000	0.651(6234)	0.587(412)	0(0)	non tumor-specific	nAS	yes
C1orf198_LS006	chr1:230868390|230868812:-	C1orf198	chromosome 1 open reading frame 198	protein coding gene	no	ENST00000522201.1	0.174	0.066	2.809	0.41(3928)	0.415(291)	0.785(13650)	non tumor-specific	alt_3prime;exon_skip	yes
ANK1_LS031	chr8:41692876|41693105:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000347528.8;ENST00000289734.12;ENST00000265709.13;ENST00000520299.5;ENST00000645531.1;ENST00000524227.5	2.582	0.642	1.834	0.328(3141)	0.168(118)	0.581(10106)	non tumor-specific	nAS	yes
UN_AC139769.1_LS0020	chr19:23776295|23777665:+	AC139769.1	-	pseudogene	no	.	1.610	0.328	0.000	0.016(152)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
RBBP9_LS004	chr20:18494063|18495838:-	RBBP9	RB binding protein 9, serine hydrolase	protein coding gene	no	ENST00000337227.8	15.695	13.638	6.505	0.955(9147)	0.981(689)	0.941(16348)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RBBP6_LS0004	chr16:24539863|24540612:+	RBBP6	RB binding protein 6, ubiquitin ligase	protein coding gene	no	.	2.803	0.591	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ANKS3_LS009	chr16:4699176|4702102:-	ANKS3	ankyrin repeat and sterile alpha motif domain containing 3	protein coding gene	no	ENST00000588513.1	0.373	0.148	0.672	0.337(3230)	0.286(201)	0.05(872)	non tumor-specific	exon_skip	yes
NCOA7_LS013	chr6:125882551|125885159:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	ENST00000368357.7;ENST00000392477.6;ENST00000229634.13	10.678	11.265	6.985	0.802(7684)	0.933(655)	0.944(16401)	non tumor-specific	alt_5prime	yes
UN_KRTAP4-9_UP_LS0007	chr17:41093458|41094854:+	KRTAP4-9	keratin associated protein 4-9	protein coding gene	no	.	3.240	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF790-AS1_LS0010	chr19:36812606|36823731:+	ZNF790-AS1	ZNF790 antisense RNA 1	lncRNA gene	no	.	2.112	0.170	0.000	0.008(78)	0.006(4)	0(0)	non tumor-specific	nAS	no
DYNLRB1_LS002	chr20:34516461|34526272:+	DYNLRB1	dynein light chain roadblock-type 1	protein coding gene	no	.;.	33.929	3.708	0.000	0.008(77)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TNIK_LS024	chr3:171126151|171138191:-	TNIK	TRAF2 and NCK interacting kinase	protein coding gene	no	ENST00000341852.10;ENST00000475336.5;ENST00000460047.5;ENST00000488470.5	0.632	0.438	1.182	0.476(4557)	0.597(419)	0.548(9528)	non tumor-specific	exon_skip	yes
UN_CFAP61_LS0049	chr20:20258614|20267494:-	CFAP61	cilia and flagella associated protein 61	protein coding gene	no	.	1.939	0.117	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PCDH1_LS0087	chr5:141864058|141864117:-	PCDH1	protocadherin 1	protein coding gene	no	.	7.700	4.936	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
TRIP12_LS051	chr2:229880128|229900737:-	TRIP12	thyroid hormone receptor interactor 12	protein coding gene	no	ENST00000343290.5	0.218	0.169	0.691	0.235(2253)	0.292(205)	0.156(2709)	non tumor-specific	exon_skip	yes
LYSMD2_LS004	chr15:51725121|51737840:-	LYSMD2	LysM domain containing 2	protein coding gene	no	ENST00000560491.2	0.061	0.062	0.714	0.256(2453)	0.256(180)	0.024(409)	non tumor-specific	alt_5prime;exon_skip	yes
TPP2_LS029	chr13:102647344|102648907:+	TPP2	tripeptidyl peptidase 2	protein coding gene	no	ENST00000376065.8;ENST00000376052.4	40.403	20.995	26.597	0.984(9426)	0.996(699)	0.978(17008)	non tumor-specific	nAS	yes
AL359538.1_LS004	chr13:24570732|24581661:+	AL359538.1	-	lncRNA gene	no	ENST00000453498.1	3.687	0.204	0.808	0.007(68)	0.006(4)	0.084(1454)	non tumor-specific	nAS	yes
UN_CTDSP2_LS0011	chr12:57820252|57820516:+	CTDSP2	CTD small phosphatase 2	protein coding gene	no	.	0.556	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
GPANK1_LS001	chr6:31662710|31663853:-	GPANK1	G-patch domain and ankyrin repeats 1	protein coding gene	no	ENST00000375906.5;ENST00000375896.8;ENST00000375893.6;ENST00000375895.6;ENST00000375900.8	51.113	26.943	33.861	0.977(9361)	0.966(678)	0.979(17020)	non tumor-specific	alt_5prime	yes
ELP6_LS006	chr3:47501851|47504330:-	ELP6	elongator acetyltransferase complex subunit 6	protein coding gene	no	ENST00000296149.8;ENST00000442215.6;ENST00000446787.5;ENST00000439305.5;ENST00000412761.5;ENST00000444760.5;ENST00000461208.5;ENST00000425291.5;ENST00000494161.1;ENST00000449409.5;ENST00000414236.5	44.487	25.231	36.454	0.997(9553)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_MDN1_LS0086	chr6:89721184|89721288:+	MDN1	midasin AAA ATPase 1	protein coding gene	no	.	1.793	0.649	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LY6D_LS0036	chr8:142785456|142785585:-	LY6D	lymphocyte antigen 6 family member D	protein coding gene	no	.	112.089	22.125	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_EIF2AK2_LS0048	chr2:37106772|37106817:+	EIF2AK2	eukaryotic translation initiation factor 2 alpha kinase 2	protein coding gene	no	.	2.083	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ABHD18_LS001	chr4:127965606|127965954:+	ABHD18	abhydrolase domain containing 18	protein coding gene	no	ENST00000513371.1	0.106	0.106	0.699	0.1(959)	0.094(66)	0.232(4031)	non tumor-specific	exon_skip;intron_retention	yes
UN_COPG2_LS0075	chr7:130537672|130542036:+	COPG2	COPI coat complex subunit gamma 2	protein coding gene	no	.	4.090	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLF1_LS0009	chr5:94671008|94686573:+	SLF1	SMC5-SMC6 complex localization factor 1	protein coding gene	no	.	1.245	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MGRN1_LS0093	chr16:4689924|4690013:-	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	3.792	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GNE_LS0051	chr9:36265308|36265421:+	GNE	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein coding gene	no	.	6.325	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SLC35A3_LS020	chr1:99993741|99999261:+	SLC35A3	solute carrier family 35 member A3	protein coding gene	no	ENST00000638371.1;ENST00000533028.7;ENST00000427993.7;ENST00000639221.1;ENST00000638336.1;ENST00000639807.1;ENST00000640715.1;ENST00000465289.6;ENST00000640726.1;ENST00000639994.1;ENST00000638988.1;ENST00000640732.1;ENST00000638929.1;ENST00000640600.1;ENST00000638338.1;ENST00000370153.6;ENST00000532693.5;ENST00000422078.1	22.696	24.955	9.095	0.963(9225)	0.99(695)	0.96(16680)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPS6KA3_LS0015	chrX:20176492|20176996:-	RPS6KA3	ribosomal protein S6 kinase A3	protein coding gene	no	.	3.325	1.055	0.000	0.013(123)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
UN_ZC3H12B_LS0003	chrX:65368998|65391822:+	ZC3H12B	zinc finger CCCH-type containing 12B	protein coding gene	no	.	1.401	0.439	0.000	0.002(22)	0.01(7)	0(0)	non tumor-specific	nAS	no
ARHGEF10L_LS034	chr1:17638689|17639834:+	ARHGEF10L	Rho guanine nucleotide exchange factor 10 like	protein coding gene	no	.;.	1.906	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PARP1P2_UP_LS0002	chr14:62166265|62304482:+	PARP1P2	poly(ADP-ribose) polymerase 1 pseudogene 2	pseudogene	no	.	2.817	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LRP6_LS0007	chr12:12122605|12124565:-	LRP6	LDL receptor related protein 6	protein coding gene	no	.	0.355	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
GLDC_LS004	chr9:6534788|6535947:-	GLDC	glycine decarboxylase	protein coding gene	no	ENST00000477960.1	0.437	0.692	1.079	0.324(3103)	0.301(211)	0.171(2979)	non tumor-specific	alt_5prime	yes
UN_KRT6B_UP_LS0011	chr12:52469890|52489943:-	KRT6B	keratin 6B	protein coding gene	no	.	56.858	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM214_LS0069	chr2:27040844|27040890:-	TMEM214	transmembrane protein 214	protein coding gene	no	.	3.000	0.704	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
TOX_LS004	chr8:58826902|58838081:-	TOX	thymocyte selection associated high mobility group box	protein coding gene	no	ENST00000361421.1	14.865	12.210	5.332	0.717(6869)	0.863(606)	0.831(14452)	non tumor-specific	nAS	yes
TPCN2_LS021	chr11:69072023|69072627:+	TPCN2	two pore segment channel 2	protein coding gene	no	ENST00000294309.7;ENST00000637504.1;ENST00000535009.5;ENST00000635811.1;ENST00000542467.1;ENST00000637342.1	14.998	8.056	15.579	0.943(9032)	0.981(689)	0.977(16977)	non tumor-specific	exon_skip	yes
UN_ENTPD5_LS0013	chr14:73961375|73961449:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.	6.637	0.797	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
USP38_LS003	chr4:143195845|143197823:+	USP38	ubiquitin specific peptidase 38	protein coding gene	no	ENST00000510377.5;ENST00000307017.8;ENST00000511739.1	19.130	15.248	6.268	0.923(8841)	0.98(688)	0.961(16696)	non tumor-specific	exon_skip	yes
HECTD4_LS059	chr12:112247550|112248067:-	HECTD4	HECT domain E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000550722.5;ENST00000377560.9	5.503	3.611	4.727	0.659(6318)	0.796(559)	0.926(16093)	non tumor-specific	exon_skip	yes
LIPA_LS030	chr10:89412919|89414407:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	.;.	1.622	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
LRRCC1_LS012	chr8:85113099|85115100:+	LRRCC1	leucine rich repeat and coiled-coil centrosomal protein 1	protein coding gene	no	ENST00000360375.7;ENST00000517875.5;ENST00000522770.1;ENST00000414626.2;ENST00000360375.7;ENST00000517875.5;ENST00000522770.1;ENST00000414626.2	9.975	6.958	4.750	0.874(8377)	0.94(660)	0.894(15538)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MT-ND5_LS0126	chrM:13639|14073:-	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	protein coding gene	no	.	34.470	61.298	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
BOD1L1_LS018	chr4:13587771|13588722:-	BOD1L1	biorientation of chromosomes in cell division 1 like 1	protein coding gene	no	ENST00000040738.9;ENST00000511119.1	33.723	21.765	34.238	0.96(9194)	0.986(692)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HIVEP1_LS0031	chr6:12125870|12161439:+	HIVEP1	HIVEP zinc finger 1	protein coding gene	yes	.	1.240	0.089	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
EDAR_LS006	chr2:108911072|108912678:-	EDAR	ectodysplasin A receptor	protein coding gene	no	ENST00000409271.5;ENST00000258443.6;ENST00000376651.1	4.780	2.624	1.348	0.238(2278)	0.366(257)	0.158(2755)	non tumor-specific	alt_5prime	yes
ZNF345_LS012	chr19:36863011|36876785:+	ZNF345	zinc finger protein 345	protein coding gene	no	ENST00000586646.1	0.629	0.059	0.713	0.038(362)	0.046(32)	0.233(4055)	non tumor-specific	exon_skip;mutex_exons	yes
GGT7_LS022	chr20:34854923|34856806:-	GGT7	gamma-glutamyltransferase 7	protein coding gene	no	ENST00000336431.9	32.766	28.703	19.884	0.967(9262)	0.993(697)	0.976(16961)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
RPF2_LS008	chr6:110997264|110999711:+	RPF2	ribosome production factor 2 homolog	protein coding gene	no	ENST00000368864.8;ENST00000441448.6;ENST00000607388.1;ENST00000425871.1	72.991	35.242	32.222	0.994(9527)	0.997(700)	0.978(16997)	non tumor-specific	exon_skip	yes
UN_KRT86_LS0050	chr12:52287322|52308355:-	KRT86	keratin 86	protein coding gene	no	.	1.480	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
USP37_LS017	chr2:218488421|218495760:-	USP37	ubiquitin specific peptidase 37	protein coding gene	no	ENST00000258399.7;ENST00000454775.5;ENST00000415516.5;ENST00000418019.5	4.430	2.486	2.152	0.661(6330)	0.809(568)	0.825(14340)	non tumor-specific	alt_3prime;exon_skip	yes
INTS11_LS009	chr1:1312368|1312593:-	INTS11	integrator complex subunit 11	protein coding gene	no	ENST00000462432.5;ENST00000462432.5;ENST00000462432.5	0.170	0.085	4.973	0.408(3905)	0.274(192)	0.955(16606)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PCSK7_LS0064	chr11:117217244|117218466:-	PCSK7	proprotein convertase subtilisin/kexin type 7	protein coding gene	no	.	3.545	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FTLP17_UP_LS0021	chr1:104923744|104924762:-	FTLP17	ferritin light chain pseudogene 17	pseudogene	no	.	8.293	0.482	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EMID1_LS0012	chr22:29215630|29216323:+	EMID1	EMI domain containing 1	protein coding gene	no	.	5.849	2.066	0.000	0.156(1498)	0.051(36)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01320_LS030	chr2:34731538|34732448:+	LINC01320	long intergenic non-protein coding RNA 1320	lncRNA gene	no	ENST00000616475.4;ENST00000626601.2;ENST00000627270.2;ENST00000603129.5	1.009	0.095	1.070	0.053(510)	0.08(56)	0.005(87)	non tumor-specific	nAS	yes
UN_FOXP2_LS0007	chr7:114263759|114269922:-	FOXP2	forkhead box P2	protein coding gene	no	.	4.665	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
DGKZ_LS010	chr11:46366526|46367291:+	DGKZ	diacylglycerol kinase zeta	protein coding gene	no	ENST00000525434.5	0.077	0.055	0.793	0.259(2486)	0.274(192)	0.161(2801)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
NEK4_LS006	chr3:52744305|52746061:-	NEK4	NIMA related kinase 4	protein coding gene	no	ENST00000233027.9;ENST00000535191.5;ENST00000383721.8;ENST00000461689.5;ENST00000493199.1	23.140	15.455	18.212	0.985(9442)	0.991(696)	0.978(16993)	non tumor-specific	exon_skip	yes
UN_PIAS2_LS0012	chr18:46903635|46906227:-	PIAS2	protein inhibitor of activated STAT 2	protein coding gene	no	.	1.214	0.211	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
SLC9B1P2_LS002	chr2:91888592|91892390:-	SLC9B1P2	solute carrier family 9 member B1 pseudogene 2	pseudogene	no	ENST00000398120.6	1.244	0.000	0.707	0(1)	0(0)	0.003(55)	non tumor-specific	nAS	yes
CFAP100_LS011	chr3:126407252|126416316:+	CFAP100	cilia and flagella associated protein 100	protein coding gene	no	.;.	2.353	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SMG1P4_LS015	chr16:21891747|21891902:-	SMG1P4	SMG1 pseudogene 4	pseudogene	no	ENST00000523028.5	6.626	1.405	0.771	0.649(6217)	0.641(450)	0.123(2132)	non tumor-specific	nAS	yes
SDHB_LS006	chr1:17024074|17027749:-	SDHB	succinate dehydrogenase complex iron sulfur subunit B	protein coding gene	yes	ENST00000375499.7;ENST00000485515.5;ENST00000491274.5	362.669	307.480	213.737	0.999(9575)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
APOBEC3A_LS002	chr22:38952850|38957588:+	APOBEC3A	apolipoprotein B mRNA editing enzyme catalytic subunit 3A	protein coding gene	no	ENST00000402255.5	0.780	0.220	2.014	0.04(380)	0.064(45)	0.1(1740)	non tumor-specific	nAS	yes
UN_INAVA_LS0004	chr1:200891701|200898392:+	INAVA	innate immunity activator	protein coding gene	no	.	1.441	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
METTL13_LS011	chr1:171784039|171785887:+	METTL13	eEF1A lysine and N-terminal methyltransferase	protein coding gene	no	ENST00000485629.1;ENST00000367737.9;ENST00000485629.1;ENST00000367737.9	0.131	0.073	0.723	0.74(7088)	0.695(488)	0.271(4703)	non tumor-specific	alt_3prime;alt_5prime	yes
LINC01727_LS001	chr20:21570248|21577595:+	LINC01727	long intergenic non-protein coding RNA 1727	lncRNA gene	no	ENST00000622928.1	0.134	0.130	1.326	0.028(266)	0.083(58)	0.051(884)	non tumor-specific	nAS	yes
AL049833.1_LS003	chr14:97119792|97121245:+	AL049833.1	-	lncRNA gene	no	ENST00000557745.1	1.303	0.000	0.683	0.001(5)	0(0)	0.001(24)	non tumor-specific	nAS	yes
IDS_LS008	chrX:149496516|149498107:-	IDS	iduronate 2-sulfatase	protein coding gene	no	ENST00000340855.10;ENST00000466323.5;ENST00000370441.8;ENST00000490775.5;ENST00000464251.5;ENST00000466019.1	82.543	74.589	90.871	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_LGR6_LS0002	chr1:202225494|202235922:+	LGR6	leucine rich repeat containing G protein-coupled receptor 6	protein coding gene	no	.	1.359	0.135	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SMIM25_LS0010	chr20:50276390|50277201:+	SMIM25	plaque enriched lncRNA in atherosclerotic and inflammatory bowel macrophage regulation	lncRNA gene	no	.	2.727	0.315	0.000	0.004(37)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_PEX11B_LS0022	chr1:145915679|145916817:-	PEX11B	peroxisomal biogenesis factor 11 beta	protein coding gene	no	.	3.317	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
AC022916.2_LS001	chr17:35188636|35190900:+	AC022916.2	-	lncRNA gene	no	ENST00000590144.1	0.093	0.019	0.667	0.018(174)	0.02(14)	0.01(172)	non tumor-specific	nAS	yes
UN_CDK16_LS0006	chrX:47218899|47218930:-	CDK16	cyclin dependent kinase 16	protein coding gene	no	.	3.736	0.902	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL445465.1_LS008	chr6:75398104|75398900:+	AL445465.1	-	lncRNA gene	no	ENST00000625815.2	6.553	0.000	0.646	0.003(24)	0(0)	0.005(93)	non tumor-specific	nAS	yes
UN_AC136475.2_UP_LS0017	chr11:314987|319900:-	AC136475.2	-	lncRNA gene	no	.	46.619	6.827	0.000	0.008(77)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_LHFPL3_LS0024	chr7:104668505|104668542:+	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	.	17.959	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
FAM83A-AS1_LS001	chr8:123201454|123201644:-	FAM83A-AS1	FAM83A antisense RNA 1	lncRNA gene	no	ENST00000517519.5	0.956	1.232	0.820	0.033(315)	0.016(11)	0.033(573)	non tumor-specific	nAS	yes
UN_BRD2_LS0004	chr6:32969056|32971146:+	BRD2	bromodomain containing 2	protein coding gene	no	.	6.616	1.487	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MILR1_UP_LS0006	chr17:64385800|64434318:+	MILR1	mast cell immunoglobulin like receptor 1	protein coding gene	no	.	3.767	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DHRS4L1_UP_LS0095	chr14:23965828|23995119:+	DHRS4L1	dehydrogenase/reductase 4 like 1	pseudogene	no	.	17.927	12.352	0.000	0.007(68)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_MGAT5_LS0096	chr2:134412644|134412869:+	MGAT5	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein coding gene	no	.	1.932	0.076	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
PABPC1L2B-AS1_LS003	chrX:73002323|73002405:-	PABPC1L2B-AS1	PABPC1L2B antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000416989.2	0.270	0.110	0.858	0.057(548)	0.047(33)	0.001(18)	non tumor-specific	nAS	yes
GGCX_LS017	chr2:85556260|85558539:-	GGCX	gamma-glutamyl carboxylase	protein coding gene	no	ENST00000423570.5	0.136	0.104	0.807	0.638(6112)	0.695(488)	0.38(6599)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SERPING1_LS0058	chr11:57602155|57606050:-	SERPING1	serpin family G member 1	protein coding gene	no	.	5.382	6.719	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IKZF4_LS0030	chr12:56020795|56021381:-	IKZF4	IKAROS family zinc finger 4	protein coding gene	no	.	1.150	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTPRN2_LS0110	chr7:158147699|158148536:+	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	.	12.217	1.452	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GALNTL6_LS0020	chr4:172864422|172870838:-	GALNTL6	polypeptide N-acetylgalactosaminyltransferase like 6	protein coding gene	no	.	2.080	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SLC25A12_LS021	chr2:171848276|171852668:-	SLC25A12	solute carrier family 25 member 12	protein coding gene	no	ENST00000475360.6	4.232	0.000	0.666	0.002(17)	0(0)	0.013(227)	non tumor-specific	exon_skip	yes
UN_BCAS2_LS0015	chr1:114570750|114576688:-	BCAS2	BCAS2 pre-mRNA processing factor	protein coding gene	no	.	1.038	0.274	0.000	0.014(132)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
UN_PGLYRP3_LS0005	chr1:153304005|153304947:-	PGLYRP3	peptidoglycan recognition protein 3	protein coding gene	no	.	7.915	2.591	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
CSNK1E_LS016	chr22:38297155|38298786:-	CSNK1E	casein kinase 1 epsilon	protein coding gene	no	ENST00000405675.7;ENST00000405675.7	1.042	0.283	3.480	0.824(7898)	0.865(607)	0.842(14632)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_EMC10_LS0171	chr19:50482724|50482838:-	EMC10	ER membrane protein complex subunit 10	protein coding gene	no	.	2.263	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALDOA_LS0087	chr16:30069664|30069927:-	ALDOA	aldolase, fructose-bisphosphate A	protein coding gene	no	.	9.577	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IQSEC1_LS0062	chr3:12998651|13015578:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	.	1.465	0.384	0.000	0.002(15)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RPL31P20_UP_LS0004	chr3:24080685|24091201:+	RPL31P20	ribosomal protein L31 pseudogene 20	pseudogene	no	.	1.342	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_APOD_UP_LS0023	chr3:195645357|195645593:-	APOD	apolipoprotein D	protein coding gene	no	.	2.930	0.251	0.000	0.01(99)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL390763.1_UP_LS0016	chr10:128661023|128686032:-	AL390763.1	-	lncRNA gene	no	.	3.179	0.841	0.000	0.009(83)	0.014(10)	0(0)	non tumor-specific	nAS	no
PDE5A_LS021	chr4:119562970|119565321:-	PDE5A	phosphodiesterase 5A	protein coding gene	no	ENST00000354960.7;ENST00000394439.5;ENST00000264805.9	7.642	9.859	5.730	0.599(5738)	0.85(597)	0.852(14813)	non tumor-specific	nAS	yes
CCNI_LS006	chr4:77056102|77056249:-	CCNI	cyclin I	protein coding gene	no	ENST00000237654.8;ENST00000506614.1;ENST00000505609.5;ENST00000504697.1	490.142	363.550	316.506	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC005377.1_UP_LS0004	chr7:140242289|140253556:+	AC005377.1	-	pseudogene	no	.	0.773	0.132	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACNA2D2_LS013	chr3:50367497|50367642:-	CACNA2D2	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein coding gene	no	ENST00000423994.6;ENST00000429770.5;ENST00000266039.7;ENST00000360963.7;ENST00000424201.6;ENST00000479441.1	46.095	22.176	3.931	0.38(3639)	0.679(477)	0.869(15097)	non tumor-specific	alt_3prime;intron_retention	yes
UN_GOLPH3L_LS0018	chr1:150694844|150696992:-	GOLPH3L	golgi phosphoprotein 3 like	protein coding gene	no	.	3.180	1.220	0.000	0.009(83)	0.013(9)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
EPRS_LS024	chr1:220018146|220018449:-	EPRS	glutamyl-prolyl-tRNA synthetase 1	protein coding gene	no	ENST00000609181.5	0.985	0.795	3.259	0.113(1086)	0.053(37)	0.201(3499)	non tumor-specific	exon_skip	yes
RPAP3_LS010	chr12:47681817|47686780:-	RPAP3	RNA polymerase II associated protein 3	protein coding gene	no	ENST00000005386.7;ENST00000432584.7;ENST00000380650.4	25.285	12.713	16.804	0.98(9394)	0.993(697)	0.977(16976)	non tumor-specific	nAS	yes
POGZ_LS005	chr1:151408240|151408409:-	POGZ	pogo transposable element derived with ZNF domain	protein coding gene	no	ENST00000392723.5;ENST00000358476.7;ENST00000271715.6;ENST00000368863.6;ENST00000409503.5;ENST00000531094.5;ENST00000491586.5;ENST00000529669.1	13.410	9.148	33.367	0.948(9084)	0.981(689)	0.978(16998)	non tumor-specific	exon_skip;intron_retention	yes
UN_SNX18P10_UP_LS0069	chr21:8988474|8988512:-	SNX18P10	sorting nexin 18 pseudogene 10	pseudogene	no	.	162.392	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
C5orf67_LS002	chr5:56513925|56533082:-	C5orf67	chromosome 5 putative open reading frame 67	protein coding gene	no	ENST00000648716.1;ENST00000611197.1;ENST00000438651.6	0.815	0.379	1.058	0.113(1079)	0.288(202)	0.299(5190)	non tumor-specific	nAS	yes
KCNK2_LS004	chr1:215083307|215086368:+	KCNK2	potassium two pore domain channel subfamily K member 2	protein coding gene	no	ENST00000391894.6;ENST00000474771.5	0.242	0.226	1.505	0.22(2109)	0.295(207)	0.423(7346)	non tumor-specific	alt_5prime	yes
UN_MRPS25_LS0011	chr3:15044223|15049708:-	MRPS25	mitochondrial ribosomal protein S25	protein coding gene	no	.	1.983	0.192	0.000	0.007(63)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_SRRM2_LS0439	chr16:2767807|2767838:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	3.154	1.434	0.000	0.005(51)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_LTBP3_LS0021	chr11:65539231|65539415:-	LTBP3	latent transforming growth factor beta binding protein 3	protein coding gene	no	.	2.436	0.101	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HNF1A_LS012	chr12:120994405|120996262:+	HNF1A	HNF1 homeobox A	protein coding gene	no	ENST00000257555.10;ENST00000400024.6;ENST00000402929.5;ENST00000538646.5;ENST00000541395.5;ENST00000540108.1;ENST00000544413.2	16.712	8.865	6.310	0.33(3162)	0.412(289)	0.121(2111)	non tumor-specific	nAS	yes
ETFDH_LS007	chr4:158680607|158681571:+	ETFDH	electron transfer flavoprotein dehydrogenase	protein coding gene	no	ENST00000436096.2	0.308	0.064	0.803	0.153(1462)	0.249(175)	0.314(5460)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PDE9A_LS0048	chr21:42760633|42760825:+	PDE9A	phosphodiesterase 9A	protein coding gene	no	.	2.936	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
MAP3K20-AS1_LS003	chr2:173198824|173207547:-	MAP3K20-AS1	MAP3K20 antisense RNA 1	lncRNA gene	no	ENST00000423106.2	8.926	0.634	0.665	0.042(406)	0.014(10)	0.019(329)	non tumor-specific	nAS	yes
ADGRL3_LS034	chr4:62063633|62068166:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000507164.5;ENST00000508693.5;ENST00000514157.5;ENST00000504896.5	0.634	0.492	1.472	0.025(242)	0.007(5)	0.084(1462)	non tumor-specific	exon_skip	yes
COL1A2_LS049	chr7:94421952|94422957:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	ENST00000297268.10;ENST00000620463.1;ENST00000497316.5;ENST00000297268.10;ENST00000620463.1;ENST00000497316.5	814.862	423.291	241.161	0.985(9440)	0.996(699)	0.97(16860)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PIGA_LS007	chrX:15325152|15325914:-	PIGA	phosphatidylinositol glycan anchor biosynthesis class A	protein coding gene	no	ENST00000333590.5;ENST00000635631.1;ENST00000542278.6;ENST00000635045.1;ENST00000635598.1;ENST00000637626.1;ENST00000638131.1;ENST00000637296.1;ENST00000634582.1;ENST00000634640.1;ENST00000635480.1;ENST00000634286.1	5.526	3.817	5.018	0.899(8612)	0.943(662)	0.951(16536)	non tumor-specific	alt_3prime;exon_skip	yes
NEMP2_LS005	chr2:190516338|190517520:-	NEMP2	nuclear envelope integral membrane protein 2	protein coding gene	no	ENST00000343105.9	0.234	0.107	0.692	0.306(2928)	0.305(214)	0.162(2810)	non tumor-specific	alt_3prime	yes
UN_NUP214_LS0038	chr9:131198986|131230649:-	NUP214	nucleoporin 214	protein coding gene	yes	.	1.230	0.178	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
VAMP2_LS003	chr17:8161766|8162249:-	VAMP2	vesicle associated membrane protein 2	protein coding gene	no	ENST00000316509.10;ENST00000404970.3;ENST00000488857.5;ENST00000481878.1	120.072	143.090	137.171	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_SLC25A3P1_LS0004	chr1:53413291|53417542:+	SLC25A3P1	solute carrier family 25 member 3 pseudogene 1	pseudogene	no	.	1.800	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_U91324.1_UP_LS0021	chr2:7881525|7883432:+	U91324.1	-	lncRNA gene	no	.	4.566	1.112	0.000	0.05(477)	0.157(110)	0(0)	non tumor-specific	nAS	no
UN_TACC3_LS0050	chr4:1743987|1744518:+	TACC3	transforming acidic coiled-coil containing protein 3	protein coding gene	no	.	8.759	1.921	0.000	0.001(12)	0.041(29)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AC026461.3_UP_LS0007	chr16:56618676|56626920:-	AC026461.3	-	lncRNA gene	no	.	1.923	1.153	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MYO16-AS1_UP_LS0058	chr13:109269263|109269421:-	MYO16-AS1	MYO16 antisense RNA 1	lncRNA gene	no	.	17.593	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL162258.2_UP_LS0003	chr1:153670949|153753637:-	AL162258.2	-	lncRNA gene	no	.	0.818	0.109	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
PARP8_LS003	chr5:50666997|50667085:+	PARP8	poly(ADP-ribose) polymerase family member 8	protein coding gene	no	ENST00000515175.5;ENST00000510040.1	0.437	0.278	1.433	0.681(6522)	0.766(538)	0.683(11864)	non tumor-specific	intron_retention	yes
UN_AL590369.1_UP_LS0004	chr9:129588048|129632650:+	AL590369.1	-	lncRNA gene	no	.	10.753	0.000	0.000	0.007(64)	0(0)	0(0)	non tumor-specific	nAS	no
DSG1_LS001	chr18:31318348|31326581:+	DSG1	desmoglein 1	protein coding gene	no	ENST00000257192.4	9.206	22.230	1.788	0.089(848)	0.177(124)	0.24(4175)	non tumor-specific	exon_skip	yes
RHOBTB2_LS011	chr8:23006145|23006728:+	RHOBTB2	Rho related BTB domain containing 2	protein coding gene	yes	ENST00000519685.5;ENST00000522948.5;ENST00000251822.6	9.922	11.502	10.833	0.932(8927)	0.947(665)	0.963(16737)	non tumor-specific	intron_retention	yes
UN_MT-TH_UP_LS0067	chrM:7925|11274:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	1055.805	172.178	0.000	0.007(70)	0.006(4)	0(0)	non tumor-specific	nAS	no
PELI3_LS014	chr11:66473925|66475572:+	PELI3	pellino E3 ubiquitin protein ligase family member 3	protein coding gene	no	ENST00000528752.1	0.452	0.568	0.690	0.032(302)	0.03(21)	0.043(755)	non tumor-specific	alt_3prime;intron_retention	yes
CNGB1_LS012	chr16:57915335|57916129:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5	5.085	0.880	1.501	0.069(663)	0.014(10)	0.123(2132)	non tumor-specific	exon_skip	yes
UN_SFTPD_LS0014	chr10:79946662|79982218:-	SFTPD	surfactant protein D	protein coding gene	no	.	2.489	1.358	0.000	0.232(2223)	0.427(300)	0(0)	non tumor-specific	alt_5prime	no
RALGAPA1_LS040	chr14:35686666|35689836:-	RALGAPA1	Ral GTPase activating protein catalytic subunit alpha 1	protein coding gene	no	ENST00000389698.7;ENST00000307138.10;ENST00000553892.2;ENST00000554652.5;ENST00000556839.5;ENST00000389698.7;ENST00000307138.10;ENST00000553892.2;ENST00000554652.5;ENST00000556839.5	2.763	2.028	2.188	0.786(7526)	0.866(608)	0.781(13569)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GTF3AP5_UP_LS0006	chr7:15186978|15365514:-	GTF3AP5	general transcription factor IIIA pseudogene 5	pseudogene	no	.	4.771	0.351	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
RPUSD4_LS006	chr11:126205781|126206254:-	RPUSD4	RNA pseudouridine synthase D4	protein coding gene	no	ENST00000530036.1	0.114	0.007	0.813	0.133(1272)	0.135(95)	0.342(5944)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_HUWE1_LS0130	chrX:53648619|53654063:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	.	1.832	0.477	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PSMD1_LS032	chr2:231170721|231172535:+	PSMD1	proteasome 26S subunit, non-ATPase 1	protein coding gene	no	ENST00000373635.8;ENST00000308696.10;ENST00000619128.4;ENST00000491229.1	31.004	19.137	133.553	0.983(9418)	0.99(695)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF542P_LS002	chr19:56368223|56368866:+	ZNF542P	zinc finger protein 542, pseudogene	pseudogene	no	ENST00000467807.5	0.079	0.055	0.698	0.118(1128)	0.221(155)	0.185(3217)	non tumor-specific	nAS	yes
LETM2_LS002	chr8:38386568|38387950:+	LETM2	leucine zipper and EF-hand containing transmembrane protein 2	protein coding gene	no	ENST00000519476.6;ENST00000297720.9;ENST00000524874.5;ENST00000379957.8;ENST00000523983.6;ENST00000523268.6;ENST00000518121.5	0.458	0.376	1.187	0.614(5887)	0.611(429)	0.543(9435)	non tumor-specific	alt_5prime	yes
UN_ZZEF1_LS0031	chr17:4034147|4034239:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	.	1.441	0.091	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MGRN1_LS0146	chr16:4690715|4690754:-	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	4.610	0.644	0.000	0.015(144)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01127_LS0004	chr2:101983269|101983479:+	LINC01127	long intergenic non-protein coding RNA 1127	lncRNA gene	no	.	1.272	0.132	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRPM2_LS0034	chr21:44410648|44410977:-	TRPM2	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	.	3.613	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
INTU_LS019	chr4:127700063|127704228:+	INTU	inturned planar cell polarity protein	protein coding gene	no	ENST00000335251.10;ENST00000503626.5;ENST00000503952.5;ENST00000512995.1	3.673	2.145	9.193	0.593(5679)	0.655(460)	0.922(16018)	non tumor-specific	exon_skip	yes
RABL6_LS021	chr9:136837615|136840485:+	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	ENST00000357466.6	0.002	0.001	0.665	0(4)	0.001(1)	0.023(403)	non tumor-specific	intron_retention	yes
STAG3L5P-PVRIG2P-PILRB_LS034	chr7:100355240|100356750:+	STAG3L5P-PVRIG2P-PILRB	STAG3L5P-PVRIG2P-PILRB readthrough	lncRNA gene	no	ENST00000310771.8;ENST00000444874.5;ENST00000472646.1	19.049	6.853	110.858	0.991(9494)	0.986(692)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ANPEP_LS040	chr15:89806945|89814233:-	ANPEP	alanyl aminopeptidase, membrane	protein coding gene	no	.;.	5.075	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PIK3CA_LS018	chr3:179224821|179225962:+	PIK3CA	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein coding gene	yes	ENST00000263967.3;ENST00000643187.1;ENST00000462255.1	14.580	10.078	15.448	0.961(9211)	0.989(694)	0.977(16981)	non tumor-specific	nAS	yes
UN_CLIP2_LS0018	chr7:74330399|74338448:+	CLIP2	CAP-Gly domain containing linker protein 2	protein coding gene	no	.	1.414	0.080	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF469_LS001	chr16:88430649|88430734:+	ZNF469	zinc finger protein 469	protein coding gene	no	ENST00000437464.1	0.716	0.291	0.603	0.049(472)	0.02(14)	0.024(422)	non tumor-specific	intron_retention	yes
SENP1_LS020	chr12:48098124|48099062:-	SENP1	SUMO specific peptidase 1	protein coding gene	no	ENST00000551798.1	0.091	0.121	0.704	0.048(461)	0.048(34)	0.176(3065)	non tumor-specific	exon_skip	yes
AP004608.1_LS001	chr11:134436784|134466186:+	AP004608.1	-	lncRNA gene	no	ENST00000531319.1	0.342	0.098	0.812	0.051(492)	0.038(27)	0.022(382)	non tumor-specific	nAS	yes
OVCH2_LS003	chr11:7691400|7691902:-	OVCH2	ovochymase 2	protein coding gene	no	ENST00000533663.5;ENST00000612000.1	4.128	0.925	2.240	0.005(47)	0.077(54)	0.21(3654)	non tumor-specific	nAS	yes
TMEM110-MUSTN1_LS011	chr3:52852698|52855396:-	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein coding gene	no	ENST00000504329.1	18.971	14.933	15.080	0.981(9401)	0.996(699)	0.978(17007)	non tumor-specific	nAS	yes
UN_MUC4_LS0350	chr3:195781513|195782186:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	3.706	0.405	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CD36_LS010	chr7:80624190|80633197:+	CD36	CD36 molecule	protein coding gene	no	ENST00000478292.2	0.041	0.037	0.693	0.07(673)	0.207(145)	0.072(1254)	non tumor-specific	exon_skip	yes
UN_GPR75-ASB3_LS0046	chr2:53771947|53774142:+	GPR75-ASB3	GPR75-ASB3 readthrough	protein coding gene	no	.	3.348	1.210	0.000	0.183(1752)	0.074(52)	0(0)	non tumor-specific	nAS	no
UN_IL32_LS0093	chr16:3069190|3081726:+	IL32	interleukin 32	protein coding gene	no	.	33.093	8.102	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
MFF_LS051	chr2:227347384|227355677:+	MFF	mitochondrial fission factor	protein coding gene	no	ENST00000392059.5;ENST00000456345.1	0.089	0.088	4.597	0.341(3264)	0.497(349)	0.954(16580)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
CCDC171_LS010	chr9:15623413|15657127:+	CCDC171	coiled-coil domain containing 171	protein coding gene	no	ENST00000380701.7	1.906	0.886	1.273	0.232(2222)	0.375(263)	0.632(10985)	non tumor-specific	exon_skip	yes
UN_SEPSECS_UP_LS0015	chr4:25506571|25516139:-	SEPSECS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein coding gene	no	.	2.263	0.114	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COG7_LS0008	chr16:23403834|23403918:-	COG7	component of oligomeric golgi complex 7	protein coding gene	no	.	2.173	1.462	0.000	0.003(25)	0.009(6)	0(0)	non tumor-specific	nAS	no
CEACAM1_LS015	chr19:42512479|42516773:-	CEACAM1	CEA cell adhesion molecule 1	protein coding gene	yes	ENST00000599389.1	0.132	0.149	1.513	0.292(2797)	0.4(281)	0.32(5566)	non tumor-specific	exon_skip;mutex_exons	yes
NTPCR_LS004	chr1:232950744|232956347:+	NTPCR	nucleoside-triphosphatase, cancer-related	protein coding gene	no	ENST00000494689.5;ENST00000494689.5	2.749	2.499	5.940	0.865(8287)	0.887(623)	0.959(16668)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GNA12_UP_LS0004	chr7:2901115|2914929:-	GNA12	G protein subunit alpha 12	protein coding gene	yes	.	9.016	18.045	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FP671120.3_UP_LS0277	chr21:8216806|8260885:-	FP671120.3	-	lncRNA gene	no	.	83.674	79.724	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ACTN4_LS0208	chr19:38729321|38729580:+	ACTN4	actinin alpha 4	protein coding gene	yes	.	60.269	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_IQSEC2_LS0035	chrX:53268769|53279564:-	IQSEC2	IQ motif and Sec7 domain ArfGEF 2	protein coding gene	no	.	1.135	0.558	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
MRPS28_LS005	chr8:80003120|80030054:-	MRPS28	mitochondrial ribosomal protein S35	protein coding gene	no	ENST00000522987.1	0.532	0.268	0.988	0.81(7757)	0.855(600)	0.547(9507)	non tumor-specific	nAS	yes
UN_CNIH3_LS0136	chr1:224624065|224680958:+	CNIH3	cornichon family AMPA receptor auxiliary protein 3	protein coding gene	no	.	1.954	0.064	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPP2R2D_LS040	chr10:131958039|131958448:+	PPP2R2D	protein phosphatase 2 regulatory subunit Bdelta	protein coding gene	no	.;.	1.411	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MIA3_LS018	chr1:222652332|222653008:+	MIA3	MIA SH3 domain ER export factor 3	protein coding gene	no	ENST00000344922.9;ENST00000340535.11	52.055	35.778	35.154	0.984(9424)	0.994(698)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime	yes
ID2-AS1_LS009	chr2:8678286|8678741:-	ID2-AS1	ID2 antisense RNA 1	lncRNA gene	no	ENST00000418957.1	0.246	0.125	0.993	0.043(411)	0.043(30)	0.091(1588)	non tumor-specific	nAS	yes
PRKCD_LS017	chr3:53179776|53181207:+	PRKCD	protein kinase C delta	protein coding gene	yes	ENST00000394729.6;ENST00000330452.7;ENST00000487897.5;ENST00000464818.1	56.390	43.056	30.709	0.984(9427)	0.991(696)	0.977(16982)	non tumor-specific	exon_skip	yes
CARMN_LS015	chr5:149429039|149430915:+	CARMN	cardiac mesoderm enhancer-associated non-coding RNA	lncRNA gene	no	ENST00000602315.2	2.562	1.597	2.101	0.003(25)	0.009(6)	0.353(6140)	non tumor-specific	nAS	yes
UN_Z99289.1_UP_LS0002	chr6:112100809|112119223:+	Z99289.1	-	lncRNA gene	no	.	1.504	0.278	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
CPSF2_LS002	chr14:92122351|92126122:+	CPSF2	cleavage and polyadenylation specific factor 2	protein coding gene	no	ENST00000553427.5	0.514	0.396	0.739	0.437(4186)	0.447(314)	0.28(4860)	non tumor-specific	alt_5prime	yes
UN_RGSL1_LS0014	chr1:182438531|182453958:+	RGSL1	regulator of G protein signaling like 1	protein coding gene	no	.	1.882	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIR3DL3_UP_LS0004	chr19:54697514|54709555:+	KIR3DL3	killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 3	protein coding gene	no	.	3.168	0.330	0.000	0.009(88)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LAMTOR1_LS0036	chr11:72097645|72097724:+	LAMTOR1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein coding gene	no	.	8.959	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
ECPAS_LS011	chr9:111371829|111372429:-	ECPAS	Ecm29 proteasome adaptor and scaffold	protein coding gene	no	ENST00000338205.9;ENST00000259335.8	90.972	65.920	89.766	0.911(8729)	0.98(688)	0.979(17021)	non tumor-specific	nAS	yes
UN_AL158166.2_UP_LS0002	chr10:128073018|128087647:-	AL158166.2	-	lncRNA gene	no	.	2.146	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PRKACB_LS022	chr1:84197824|84202683:+	PRKACB	protein kinase cAMP-activated catalytic subunit beta	protein coding gene	no	ENST00000370689.6;ENST00000370688.7;ENST00000370685.7;ENST00000370684.5;ENST00000446538.5;ENST00000610703.4;ENST00000370682.7;ENST00000394838.6;ENST00000432111.5;ENST00000370680.5;ENST00000614872.4;ENST00000394839.6;ENST00000610457.1	27.090	29.624	13.357	0.948(9078)	0.989(694)	0.97(16855)	non tumor-specific	alt_3prime;exon_skip	yes
UN_POU6F2_LS0056	chr7:39325176|39339642:+	POU6F2	POU class 6 homeobox 2	protein coding gene	yes	.	2.468	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TP63_LS008	chr3:189808526|189844197:+	TP63	symbol withdrawn, see [HGNC:15979](/data/gene-symbol-report/#!/hgnc_id/HGNC:15979)	protein coding gene	yes	ENST00000434928.5	0.095	0.094	0.845	0.128(1223)	0.108(76)	0.083(1440)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BOP1_LS0059	chr8:144265146|144265227:+	BOP1	BOP1 ribosomal biogenesis factor	protein coding gene	no	.	2.451	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
PREX2_LS021	chr8:68090715|68093605:+	PREX2	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein coding gene	no	ENST00000288368.4;ENST00000529398.5;ENST00000517617.1	4.274	2.794	2.534	0.282(2706)	0.557(391)	0.749(13015)	non tumor-specific	alt_3prime;exon_skip	yes
KNOP1_LS003	chr16:19707221|19710509:-	KNOP1	lysine rich nucleolar protein 1	protein coding gene	no	ENST00000219837.11;ENST00000568230.5;ENST00000567367.1	17.959	6.364	15.025	0.937(8977)	0.926(650)	0.974(16926)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TRIM13_LS0009	chr13:49997763|50010239:+	TRIM13	tripartite motif containing 13	protein coding gene	yes	.	3.056	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDC25B_LS0068	chr20:3805717|3805758:-	CDC25B	cell division cycle 25B	protein coding gene	no	.	5.592	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C4B_LS0017	chr6:32024931|32024958:-	C4B	complement C4B (Chido blood group)	protein coding gene	no	.	11.308	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HIVEP2_LS0008	chr6:142764974|142767090:-	HIVEP2	HIVEP zinc finger 2	protein coding gene	no	.	1.058	0.345	0.000	0.005(52)	0.013(9)	0(0)	non tumor-specific	nAS	no
MRPL21_LS007	chr11:68896678|68897927:-	MRPL21	mitochondrial ribosomal protein L21	protein coding gene	no	ENST00000450904.6;ENST00000362034.6;ENST00000565125.5;ENST00000541279.1;ENST00000567045.5;ENST00000541265.1	178.681	88.007	117.996	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
XPNPEP1_LS037	chr10:109893075|109894016:-	XPNPEP1	X-prolyl aminopeptidase 1	protein coding gene	no	ENST00000490740.6	0.039	0.038	1.199	0.344(3300)	0.333(234)	0.619(10757)	non tumor-specific	exon_skip	yes
UN_LINC01488_LS0001	chr11:69481783|69486040:+	LINC01488	long intergenic non-protein coding RNA 1488	lncRNA gene	no	.	2.159	2.579	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC7B_LS001	chr14:90541589|90578106:-	TTC7B	tetratricopeptide repeat domain 7B	protein coding gene	no	ENST00000328459.10;ENST00000555005.5;ENST00000553972.5;ENST00000554654.5;ENST00000557292.1	8.378	11.799	25.693	0.911(8724)	0.97(681)	0.972(16893)	non tumor-specific	exon_skip	yes
UN_FUS_LS0152	chr16:31185059|31185114:+	FUS	FUS RNA binding protein	protein coding gene	yes	.	41.290	7.437	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
AC091808.1_LS001	chrX:39401518|39402965:-	AC091808.1	-	lncRNA gene	no	ENST00000438867.1	0.976	0.056	0.659	0.003(27)	0.001(1)	0.009(152)	non tumor-specific	nAS	yes
SLCO1A2_LS012	chr12:21304573|21306882:-	SLCO1A2	solute carrier organic anion transporter family member 1A2	protein coding gene	no	ENST00000307378.10;ENST00000544020.5;ENST00000458504.5;ENST00000544290.5;ENST00000480394.5;ENST00000463718.5;ENST00000413682.5	4.994	2.872	10.948	0.168(1607)	0.241(169)	0.216(3754)	non tumor-specific	exon_skip	yes
UN_FITM2_UP_LS0005	chr20:44337009|44351880:-	FITM2	fat storage inducing transmembrane protein 2	protein coding gene	no	.	5.099	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF365_LS007	chr10:62398777|62399528:+	ZNF365	zinc finger protein 365	protein coding gene	no	ENST00000395254.7;ENST00000466727.1	5.232	7.285	2.371	0.426(4083)	0.449(315)	0.522(9073)	non tumor-specific	alt_5prime	yes
UBE2D4_LS002	chr7:43926556|43938431:+	UBE2D4	ubiquitin conjugating enzyme E2 D4 (putative)	protein coding gene	no	ENST00000454350.5;ENST00000222402.7;ENST00000415051.5;ENST00000446008.5;ENST00000440652.5	1.925	1.268	7.260	0.954(9137)	0.972(682)	0.968(16820)	non tumor-specific	exon_skip	yes
AKAP6_LS013	chr14:32600792|32678311:+	AKAP6	A-kinase anchoring protein 6	protein coding gene	no	ENST00000280979.8;ENST00000557354.5;ENST00000557272.1	5.925	5.259	5.228	0.344(3296)	0.642(451)	0.796(13831)	non tumor-specific	exon_skip	yes
UN_SGMS1-AS1_LS0005	chr10:50627609|50629031:+	SGMS1-AS1	SGMS1 antisense RNA 1	lncRNA gene	no	.	2.352	1.035	0.000	0.07(666)	0.214(150)	0(0)	non tumor-specific	nAS	no
UN_SSR1_LS0016	chr6:7283472|7286719:-	SSR1	signal sequence receptor subunit 1	protein coding gene	no	.	3.188	0.491	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
RICTOR_LS040	chr5:38978650|38981867:-	RICTOR	RPTOR independent companion of MTOR complex 2	protein coding gene	no	ENST00000357387.7;ENST00000296782.9;ENST00000510711.5	6.212	3.768	3.813	0.614(5881)	0.805(565)	0.87(15130)	non tumor-specific	alt_3prime;exon_skip	yes
LRRC8B_LS009	chr1:89572612|89579591:+	LRRC8B	leucine rich repeat containing 8 VRAC subunit B	protein coding gene	no	ENST00000639264.1	0.985	0.031	0.675	0.003(27)	0.001(1)	0.033(574)	non tumor-specific	nAS	yes
LINC01204_LS002	chrX:45510595|45521608:+	LINC01204	long intergenic non-protein coding RNA 1204	lncRNA gene	no	ENST00000435394.5;ENST00000609127.1	1.065	0.003	1.228	0.011(110)	0.003(2)	0.039(671)	non tumor-specific	nAS	yes
IFT81_LS010	chr12:110136860|110143382:+	IFT81	intraflagellar transport 81	protein coding gene	no	ENST00000361948.8;ENST00000552912.5;ENST00000242591.9;ENST00000546374.5;ENST00000550156.5;ENST00000549009.1	10.240	5.712	11.378	0.946(9065)	0.96(674)	0.944(16404)	non tumor-specific	exon_skip	yes
CACNA2D1_LS028	chr7:82005497|82005765:-	CACNA2D1	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein coding gene	no	ENST00000356860.7;ENST00000356253.9;ENST00000443883.1;ENST00000466806.5;ENST00000464354.5	4.220	5.351	4.447	0.581(5571)	0.821(576)	0.826(14361)	non tumor-specific	nAS	yes
UN_TK2_LS0010	chr16:66513811|66513948:-	TK2	thymidine kinase 2	protein coding gene	no	.	2.910	0.191	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
CIB2_LS020	chr15:78111276|78120568:-	CIB2	calcium and integrin binding family member 2	protein coding gene	no	ENST00000559054.1	0.119	0.254	1.203	0.456(4365)	0.534(375)	0.594(10319)	non tumor-specific	alt_5prime;exon_skip	yes
DUSP12_LS012	chr1:161752464|161753075:+	DUSP12	dual specificity phosphatase 12	protein coding gene	yes	ENST00000484291.5;ENST00000367943.4;ENST00000464004.2;ENST00000463365.1	56.487	25.201	33.749	0.998(9558)	0.996(699)	0.979(17016)	non tumor-specific	alt_3prime	yes
CCNA1_LS013	chr13:36442304|36442614:+	CCNA1	cyclin A1	protein coding gene	no	ENST00000630422.2;ENST00000440264.5;ENST00000255465.6;ENST00000625767.1	10.630	2.050	1.996	0.409(3915)	0.373(262)	0.683(11873)	non tumor-specific	exon_skip	yes
TAPBP_LS001	chr6:33300090|33303955:-	TAPBP	TAP binding protein	protein coding gene	no	.;.	50.830	0.430	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RPS6_LS0029	chr9:19376651|19378393:-	RPS6	ribosomal protein S6	protein coding gene	no	.	1134.773	241.423	0.000	0.028(268)	0.027(19)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_RILP_LS0004	chr17:1646985|1647831:-	RILP	Rab interacting lysosomal protein	protein coding gene	no	.	6.273	2.333	0.000	0.002(16)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_HERC2P2_LS0119	chr15:22587650|22588131:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	6.155	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
THAP1_LS005	chr8:42839381|42843024:-	THAP1	THAP domain containing 1	protein coding gene	no	ENST00000254250.7;ENST00000529779.1	12.403	7.112	10.195	0.888(8511)	0.933(655)	0.974(16925)	non tumor-specific	exon_skip	yes
FRMD4A_LS015	chr10:13666325|13670406:-	FRMD4A	FERM domain containing 4A	protein coding gene	no	ENST00000357447.6;ENST00000264546.10	15.188	13.767	15.922	0.78(7477)	0.953(669)	0.966(16795)	non tumor-specific	exon_skip	yes
STK16_LS012	chr2:219246085|219247415:+	STK16	serine/threonine kinase 16	protein coding gene	no	ENST00000409516.7;ENST00000409516.7	0.194	0.145	0.695	0.748(7168)	0.749(526)	0.159(2761)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MPST_LS0031	chr22:37024421|37024693:-	MPST	mercaptopyruvate sulfurtransferase	protein coding gene	yes	.	1.265	1.269	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	nAS	no
MED18_LS005	chr1:28335086|28335794:+	MED18	mediator complex subunit 18	protein coding gene	no	ENST00000398997.2	0.817	0.573	0.707	0.597(5721)	0.575(404)	0.199(3466)	non tumor-specific	intron_retention	yes
UN_CCND3_LS0039	chr6:41937394|41937594:-	CCND3	cyclin D3	protein coding gene	no	.	3.709	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_KIAA1671_LS0116	chr22:25191030|25192410:+	KIAA1671	KIAA1671	protein coding gene	no	.	1.655	0.484	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NBEAL1_LS0069	chr2:203190852|203191003:-	NBEAL1	neurobeachin like 1	protein coding gene	no	.	20.185	1.467	0.000	0.01(97)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC006978.2_LS004	chr7:30412073|30412331:+	AC006978.2	-	protein coding gene	no	ENST00000442800.1	0.315	0.116	0.873	0.185(1770)	0.124(87)	0.369(6418)	non tumor-specific	alt_5prime;intron_retention	yes
UN_BRPF3_LS0021	chr6:36209915|36210385:+	BRPF3	bromodomain and PHD finger containing 3	protein coding gene	no	.	1.094	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
C9orf92_LS004	chr9:16215899|16253040:-	C9orf92	chromosome 9 open reading frame 92	protein coding gene	no	ENST00000380683.6;ENST00000433347.2	0.406	0.051	0.750	0.01(100)	0.027(19)	0.007(121)	non tumor-specific	nAS	yes
UN_RNASE6_LS0002	chr14:20781338|20781700:+	RNASE6	ribonuclease A family member k6	protein coding gene	no	.	5.011	0.483	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
CACNB4_LS026	chr2:151883370|151970281:-	CACNB4	calcium voltage-gated channel auxiliary subunit beta 4	protein coding gene	no	ENST00000635930.1;ENST00000637284.1	0.383	0.000	0.694	0(3)	0(0)	0.018(311)	non tumor-specific	nAS	yes
ABHD1_LS017	chr2:27129927|27130227:+	ABHD1	abhydrolase domain containing 1	protein coding gene	no	ENST00000621324.4;ENST00000489120.5;ENST00000448950.5;ENST00000420647.5;ENST00000621324.4;ENST00000489120.5;ENST00000448950.5;ENST00000420647.5	2.685	0.865	2.343	0.249(2388)	0.352(247)	0.744(12937)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF626_LS0017	chr19:20624513|20624598:+	ZNF626	zinc finger protein 626	protein coding gene	no	.	2.509	1.031	0.000	0.095(910)	0.118(83)	0(0)	non tumor-specific	nAS	no
UN_CEP164_LS0038	chr11:117380714|117381641:+	CEP164	centrosomal protein 164	protein coding gene	no	.	1.760	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
PREB_LS016	chr2:27133654|27134287:-	PREB	prolactin regulatory element binding	protein coding gene	no	ENST00000444452.5	0.225	0.248	0.768	0.614(5886)	0.65(456)	0.379(6595)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_AC097652.1_UP_LS0020	chr4:187377165|187505292:-	AC097652.1	-	lncRNA gene	no	.	4.071	0.623	0.000	0.012(114)	0.013(9)	0(0)	non tumor-specific	nAS	no
UBR1_LS004	chr15:42958090|42960645:-	UBR1	ubiquitin protein ligase E3 component n-recognin 1	protein coding gene	no	ENST00000290650.8	13.525	10.032	11.443	0.959(9186)	0.983(690)	0.976(16970)	non tumor-specific	exon_skip	yes
UN_ELF4_LS0066	chrX:130074752|130110620:-	ELF4	E74 like ETS transcription factor 4	protein coding gene	yes	.	1.694	0.399	0.000	0.013(127)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
GRB10_LS019	chr7:50674658|50755887:-	GRB10	growth factor receptor bound protein 10	protein coding gene	no	ENST00000644879.1	5.342	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	yes
UN_IQSEC3_LS0042	chr12:172309|174616:+	IQSEC3	IQ motif and Sec7 domain ArfGEF 3	protein coding gene	no	.	2.829	0.099	0.000	0.012(118)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_TPM2_LS0026	chr9:35689847|35689904:+	TPM2	tropomyosin 2	protein coding gene	no	.	4.709	5.475	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RNU2-53P_UP_LS0032	chr15:53509800|53514004:+	RNU2-53P	RNA, U2 small nuclear 53, pseudogene	small non-coding RNA gene	no	.	5.327	0.209	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	nAS	no
TRAF5_LS004	chr1:211353457|211354410:+	TRAF5	TNF receptor associated factor 5	protein coding gene	no	ENST00000462410.5;ENST00000336184.6;ENST00000488428.1;ENST00000261464.9;ENST00000367004.3	5.839	3.094	7.346	0.828(7929)	0.839(589)	0.911(15834)	non tumor-specific	exon_skip	yes
SLC22A31_LS001	chr16:89196305|89197298:-	SLC22A31	solute carrier family 22 member 31	protein coding gene	no	ENST00000614943.4;ENST00000562855.6;ENST00000563595.6	10.785	9.134	1.382	0.319(3057)	0.236(166)	0.417(7240)	non tumor-specific	alt_3prime	yes
NTRK1_LS025	chr1:156880157|156881457:+	NTRK1	neurotrophic receptor tyrosine kinase 1	protein coding gene	yes	ENST00000392302.6;ENST00000497019.6;ENST00000530298.5;ENST00000368196.7;ENST00000524377.5;ENST00000358660.3	17.269	2.108	2.071	0.117(1120)	0.179(126)	0.655(11378)	non tumor-specific	exon_skip	yes
UN_IGKV4-1_LS0001	chr2:88885620|88885831:+	IGKV4-1	immunoglobulin kappa variable 4-1	no	no	.	39.762	1.266	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
DDX60L_LS040	chr4:168433115|168441337:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000260184.11;ENST00000511577.5;ENST00000505890.5;ENST00000505863.1	6.128	2.905	3.148	0.648(6213)	0.792(556)	0.835(14518)	non tumor-specific	alt_5prime;exon_skip	yes
AC090616.2_LS002	chr17:32095201|32096843:+	AC090616.2	-	pseudogene	no	ENST00000358484.4	0.138	0.040	0.925	0.033(320)	0.006(4)	0.081(1413)	non tumor-specific	nAS	yes
UN_AC104938.1_LS0002	chr15:71818752|71823063:+	AC104938.1	-	lncRNA gene	no	.	2.972	0.229	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
HNRNPC_LS050	chr14:21268668|21269298:-	HNRNPC	heterogeneous nuclear ribonucleoprotein C	protein coding gene	no	ENST00000554383.5;ENST00000555215.5;ENST00000554891.5	0.077	0.418	1.958	0.822(7880)	0.766(538)	0.786(13667)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AP3B1_LS017	chr5:78128160|78129121:-	AP3B1	adaptor related protein complex 3 subunit beta 1	protein coding gene	no	ENST00000255194.10;ENST00000519295.5;ENST00000517561.1	54.653	38.981	21.904	0.97(9298)	0.984(691)	0.979(17012)	non tumor-specific	alt_3prime	yes
RMDN3_LS003	chr15:40737341|40737628:-	RMDN3	regulator of microtubule dynamics 3	protein coding gene	no	ENST00000260385.10;ENST00000560588.5;ENST00000558777.5;ENST00000338376.7;ENST00000558232.5	72.499	50.952	49.307	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
MMP8_LS019	chr11:102723945|102724754:-	MMP8	matrix metallopeptidase 8	protein coding gene	no	ENST00000532799.1	0.000	0.000	0.670	0(1)	0(0)	0.002(41)	non tumor-specific	nAS	yes
UN_WDR36_LS0010	chr5:111100721|111102368:+	WDR36	WD repeat domain 36	protein coding gene	no	.	2.332	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC244035.1_LS002	chr1:206118340|206126490:+	AC244035.1	-	lncRNA gene	no	ENST00000425896.1	0.334	0.036	0.831	0.011(106)	0.003(2)	0.002(32)	non tumor-specific	nAS	yes
UN_RNF34_LS0027	chr12:121420991|121423386:+	RNF34	ring finger protein 34	protein coding gene	no	.	2.850	0.435	0.000	0.007(70)	0.009(6)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SETD4_LS027	chr21:36058911|36060347:-	SETD4	SET domain containing 4	protein coding gene	no	.;.	4.770	0.815	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
ZEB1_LS017	chr10:31322084|31355144:+	ZEB1	zinc finger E-box binding homeobox 1	protein coding gene	no	ENST00000558832.5	1.350	0.000	0.647	0.004(34)	0(0)	0.004(62)	non tumor-specific	nAS	yes
UN_KANSL3_LS0034	chr2:96627983|96628572:-	KANSL3	KAT8 regulatory NSL complex subunit 3	protein coding gene	no	.	0.751	0.067	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_FP236383.1_UP_LS0192	chr21:8215374|8259450:+	FP236383.1	-	lncRNA gene	no	.	169.760	26.337	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_LRP10_LS0052	chr14:22875245|22875331:+	LRP10	LDL receptor related protein 10	protein coding gene	no	.	19.902	17.213	0.000	0.041(394)	0.066(46)	0(0)	non tumor-specific	alt_3prime	no
UN_PCAT14_UP_LS0003	chr22:23434061|23460353:+	PCAT14	prostate cancer associated transcript 14	lncRNA gene	no	.	2.232	1.011	0.000	0.015(144)	0.019(13)	0(0)	non tumor-specific	nAS	no
AL355339.1_LS001	chr10:16278749|16283730:+	AL355339.1	-	lncRNA gene	no	ENST00000434386.5;ENST00000417542.1	0.183	0.000	0.775	0(3)	0(0)	0.002(35)	non tumor-specific	nAS	yes
UN_UPRT_UP_LS0001	chrX:75167879|75223466:+	UPRT	uracil phosphoribosyltransferase homolog	protein coding gene	no	.	1.327	0.341	0.000	0.006(56)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_DBP_LS0009	chr19:48633655|48634699:-	DBP	hydroxysteroid 17-beta dehydrogenase 4	protein coding gene	no	.	1.824	0.393	0.000	0.073(703)	0.07(49)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_KLHL7-DT_LS0006	chr7:23104317|23105553:-	KLHL7-DT	KLHL7 divergent transcript	lncRNA gene	no	.	2.111	0.303	0.000	0.046(437)	0.021(15)	0(0)	non tumor-specific	nAS	no
SPDYA_LS017	chr2:28840469|28849850:+	SPDYA	speedy/RINGO cell cycle regulator family member A	protein coding gene	no	ENST00000379579.8;ENST00000491044.1;ENST00000334056.9	0.800	0.224	0.737	0.203(1947)	0.07(49)	0.151(2618)	non tumor-specific	exon_skip	yes
POLR3A_LS022	chr10:78007866|78009864:-	POLR3A	RNA polymerase III subunit A	protein coding gene	no	ENST00000473588.2	0.627	0.281	0.714	0.09(863)	0.103(72)	0.145(2523)	non tumor-specific	exon_skip	yes
C3orf35_LS004	chr3:37411309|37416554:+	C3orf35	chromosome 3 open reading frame 35	lncRNA gene	no	ENST00000425932.5;ENST00000328376.9;ENST00000332506.7;ENST00000481400.5;ENST00000466204.5;ENST00000426078.5	0.923	0.379	2.706	0.236(2263)	0.191(134)	0.855(14855)	non tumor-specific	exon_skip	yes
UN_UCK2_LS0005	chr1:165883797|165884096:-	UCK2	uridine-cytidine kinase 2	protein coding gene	no	.	2.319	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0419	chr1:631516|633641:-	AL669831.3	-	pseudogene	no	.	73.371	44.863	0.000	0.002(15)	0.009(6)	0(0)	non tumor-specific	nAS	no
TRANK1_LS006	chr3:36834907|36838372:-	TRANK1	tetratricopeptide repeat and ankyrin repeat containing 1	protein coding gene	no	ENST00000429976.5;ENST00000646897.1;ENST00000645898.1;ENST00000643881.1	9.096	7.807	10.421	0.851(8153)	0.947(665)	0.945(16429)	non tumor-specific	exon_skip	yes
DCBLD2_LS015	chr3:98849598|98881540:-	DCBLD2	discoidin, CUB and LCCL domain containing 2	protein coding gene	no	ENST00000326840.10;ENST00000326857.9;ENST00000486004.1;ENST00000449482.1	13.395	8.665	6.553	0.854(8181)	0.929(652)	0.916(15929)	non tumor-specific	exon_skip;mutex_exons	yes
UN_KDM1A_UP_LS0002	chr1:22941869|22948122:+	KDM1A	lysine demethylase 1A	protein coding gene	no	.	8.393	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA1324L_LS0005	chr7:86889697|86891724:-	KIAA1324L	endosome-lysosome associated apoptosis and autophagy regulator family member 2	protein coding gene	no	.	0.479	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF404_LS0019	chr19:43897968|43900868:-	ZNF404	zinc finger protein 404	protein coding gene	no	.	1.941	0.021	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LSM14A_LS0007	chr19:34172763|34194479:+	LSM14A	LSM14A mRNA processing body assembly factor	protein coding gene	no	.	12.046	1.177	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_PAXBP1P1_UP_LS0003	chr7:153413850|153423441:+	PAXBP1P1	PAX3 and PAX7 binding protein 1 pseudogene 1	pseudogene	no	.	1.260	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SMG1P4_LS014	chr16:21890882|21891592:-	SMG1P4	SMG1 pseudogene 4	pseudogene	no	ENST00000523028.5	6.115	1.281	0.886	0.641(6140)	0.638(448)	0.135(2346)	non tumor-specific	nAS	yes
KIF26B_LS007	chr1:245419745|245540767:+	KIF26B	kinesin family member 26B	protein coding gene	no	ENST00000407071.6	3.571	1.373	0.988	0.465(4459)	0.329(231)	0.291(5062)	non tumor-specific	nAS	yes
UN_ACADVL_LS0051	chr17:7225114|7225192:-	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	.	73.732	5.264	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SEC24B_LS0028	chr4:109506516|109510009:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	.	2.358	0.206	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_GNAL_LS0040	chr18:11884622|11885676:-	GNAL	G protein subunit alpha L	protein coding gene	no	.	1.335	0.771	0.000	0.003(28)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
MBP_LS020	chr18:76985210|76986906:-	MBP	proteoglycan 2, pro eosinophil major basic protein	protein coding gene	no	ENST00000582282.5	0.000	0.002	1.027	0.009(88)	0.001(1)	0.008(142)	non tumor-specific	exon_skip;intron_retention	yes
NRCAM_LS007	chr7:108150753|108156387:-	NRCAM	neuronal cell adhesion molecule	protein coding gene	yes	ENST00000522550.2	0.068	0.000	0.840	0.064(610)	0.124(87)	0.024(410)	non tumor-specific	alt_3prime;exon_skip	yes
SRP54_LS019	chr14:35018765|35018966:+	SRP54	signal recognition particle 54	protein coding gene	no	ENST00000556994.5;ENST00000546080.5;ENST00000216774.10;ENST00000555557.5;ENST00000553923.1;ENST00000556445.1	114.382	66.818	57.199	0.996(9542)	0.997(700)	0.979(17020)	non tumor-specific	intron_retention	yes
AC079395.3_LS001	chr2:97000614|97001289:-	AC079395.3	-	pseudogene	no	ENST00000615161.1	0.010	0.000	1.490	0.001(8)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_AL732314.6_UP_LS0007	chrX:321155|326699:+	AL732314.6	-	lncRNA gene	no	.	0.848	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC74A_LS022	chr2:131532937|131533013:+	CCDC74A	coiled-coil domain containing 74A	protein coding gene	no	ENST00000295171.10;ENST00000467992.6;ENST00000409856.7	34.319	17.868	12.746	0.931(8924)	0.925(649)	0.933(16220)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ARMC2_LS0033	chr6:108928233|108953033:+	ARMC2	armadillo repeat containing 2	protein coding gene	no	.	2.315	0.250	0.000	0.012(117)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_XG_LS0029	chrX:2810912|2815581:-	XG	Xg glycoprotein (Xg blood group)	protein coding gene	no	.	1.476	0.256	0.000	0.007(63)	0.009(6)	0(0)	non tumor-specific	nAS	no
ITIH3_LS010	chr3:52798773|52798966:+	ITIH3	inter-alpha-trypsin inhibitor heavy chain 3	protein coding gene	no	ENST00000463893.1	0.487	0.138	1.199	0.011(107)	0.05(35)	0.105(1825)	non tumor-specific	alt_5prime	yes
UN_SCIN_UP_LS0009	chr7:12568301|12570465:+	SCIN	scinderin	protein coding gene	no	.	1.354	0.224	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC022905.1_LS0011	chr8:72214331|72215715:-	AC022905.1	-	pseudogene	no	.	2.570	0.129	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TPPP_UP_LS0010	chr5:702822|708425:-	TPPP	tubulin polymerization promoting protein	protein coding gene	no	.	1.985	1.364	0.000	0.01(95)	0.003(2)	0(0)	non tumor-specific	nAS	no
WDR19_LS002	chr4:39182563|39186539:+	WDR19	WD repeat domain 19	protein coding gene	no	ENST00000509560.5;ENST00000512112.5	0.038	0.060	0.867	0.274(2626)	0.353(248)	0.39(6781)	non tumor-specific	exon_skip	yes
UN_CTPS2_LS0016	chrX:16639243|16653206:-	CTPS2	CTP synthase 2	protein coding gene	no	.	3.923	0.816	0.000	0.017(161)	0.057(40)	0(0)	non tumor-specific	exon_skip	no
UN_LINC00605_UP_LS0019	chr14:103225634|103232466:-	LINC00605	long intergenic non-protein coding RNA 605	lncRNA gene	no	.	1.143	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPH3AL_LS0052	chr17:321568|321611:+	RPH3AL	rabphilin 3A like (without C2 domains)	protein coding gene	no	.	15.038	1.475	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KRT73-AS1_UP_LS0264	chr12:52469098|52487754:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	142.462	118.265	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_WDR70_LS0020	chr5:37487768|37516514:+	WDR70	WD repeat domain 70	protein coding gene	no	.	1.593	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCNJ4_LS0001	chr22:38427430|38427509:+	KCNJ4	potassium inwardly rectifying channel subfamily J member 4	protein coding gene	no	.	1.665	0.416	0.000	0.007(66)	0.007(5)	0(0)	non tumor-specific	nAS	no
PPFIA4_LS036	chr1:203061032|203063828:+	PPFIA4	PTPRF interacting protein alpha 4	protein coding gene	no	ENST00000295706.8;ENST00000599966.5;ENST00000295706.8;ENST00000599966.5	1.912	0.867	3.028	0.278(2662)	0.113(79)	0.803(13962)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HSD17B6_LS001	chr12:56752318|56763218:+	HSD17B6	hydroxysteroid 17-beta dehydrogenase 6	protein coding gene	no	ENST00000555805.5	0.182	0.098	0.626	0.069(664)	0.036(25)	0.007(124)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC021220.1_UP_LS0005	chr4:55177611|55178279:+	AC021220.1	-	pseudogene	no	.	7.049	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
NRP1_LS012	chr10:33197709|33207572:-	NRP1	neuropilin 1	protein coding gene	no	ENST00000374821.9	1.017	0.635	1.660	0.801(7670)	0.873(613)	0.606(10529)	non tumor-specific	exon_skip	yes
UN_ANKAR_LS0002	chr2:189689964|189693074:+	ANKAR	ankyrin and armadillo repeat containing	protein coding gene	no	.	1.027	0.060	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SNX17_LS0024	chr2:27376865|27376987:-	SNX17	sorting nexin 17	protein coding gene	no	.	1.679	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IFITM2_LS0049	chr11:309038|314266:+	IFITM2	interferon induced transmembrane protein 2	protein coding gene	no	.	145.591	9.548	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HNRNPM_LS0084	chr19:8486090|8486112:-	HNRNPM	heterogeneous nuclear ribonucleoprotein M	protein coding gene	no	.	2.709	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TPRXL_LS007	chr3:13955654|14063379:+	TPRXL	tetrapeptide repeat homeobox like (pseudogene)	pseudogene	no	ENST00000532880.6;ENST00000532753.5	0.639	0.000	0.657	0.013(121)	0(0)	0.022(384)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC012409.2_LS0030	chr15:96153119|96156486:-	AC012409.2	-	lncRNA gene	no	.	1.363	0.201	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CAP2_LS0006	chr6:17418239|17421555:+	CAP2	serpin family B member 8	protein coding gene	no	.	0.708	0.072	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHG6_UP_LS0004	chr12:6278428|6279222:+	PLEKHG6	pleckstrin homology and RhoGEF domain containing G6	protein coding gene	no	.	1.343	0.437	0.000	0.01(97)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_KRT18P49_UP_LS0002	chrX:107364433|107371872:+	KRT18P49	keratin 18 pseudogene 49	pseudogene	no	.	1.141	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TDRD7_UP_LS0001	chr9:97376884|97380210:+	TDRD7	tudor domain containing 7	protein coding gene	no	.	1.293	0.172	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CALCOCO2_UP_LS0013	chr17:48752623|48754059:+	CALCOCO2	calcium binding and coiled-coil domain 2	protein coding gene	no	.	2.983	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL45_LS012	chr17:38320767|38322126:+	MRPL45	mitochondrial ribosomal protein L45	protein coding gene	no	ENST00000613675.4	118.563	69.966	46.656	0.997(9549)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC006065.1_UP_LS0005	chr12:126600160|126601269:-	AC006065.1	-	pseudogene	no	.	6.296	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FBXW8_LS0027	chr12:116964854|117004436:+	FBXW8	F-box and WD repeat domain containing 8	protein coding gene	no	.	0.239	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_GART_LS0008	chr21:33506104|33511252:-	GART	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein coding gene	no	.	2.597	2.782	0.000	0.045(430)	0.037(26)	0(0)	non tumor-specific	exon_skip	no
DNAH8_LS079	chr6:38931993|38935592:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000449981.6;ENST00000359357.7	12.821	0.395	0.935	0.015(139)	0.006(4)	0.041(710)	non tumor-specific	nAS	yes
ABCA7_LS013	chr19:1043251|1043334:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	7.633	3.193	7.052	0.73(6998)	0.748(525)	0.949(16489)	non tumor-specific	alt_3prime;alt_5prime	yes
SLC3A2_LS014	chr11:62882066|62882505:+	SLC3A2	solute carrier family 3 member 2	protein coding gene	yes	ENST00000537839.5	0.019	0.010	1.626	0.51(4883)	0.368(258)	0.707(12281)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_ACTG1_LS0047	chr17:81510168|81510204:+	ACTG1	actin gamma 1	protein coding gene	no	.	2.598	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
HERPUD1_LS002	chr16:56932391|56935242:+	HERPUD1	homocysteine inducible ER protein with ubiquitin like domain 1	protein coding gene	no	ENST00000565966.5	1.292	2.351	1.104	0.681(6524)	0.819(575)	0.616(10710)	non tumor-specific	alt_3prime	yes
EEF1D_LS077	chr8:143590735|143592647:-	EEF1D	eukaryotic translation elongation factor 1 delta	protein coding gene	yes	ENST00000526135.5;ENST00000526135.5	0.044	0.031	0.814	0.333(3188)	0.228(160)	0.333(5782)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DDX19A_LS009	chr16:70356247|70356823:+	DDX19A	DEAD-box helicase 19A	protein coding gene	no	ENST00000569244.6	0.171	0.001	0.588	0.002(16)	0.004(3)	0.005(83)	non tumor-specific	nAS	yes
UN_CHST15_LS0034	chr10:124046724|124092227:-	CHST15	carbohydrate sulfotransferase 15	protein coding gene	no	.	1.439	0.321	0.000	0.033(313)	0.026(18)	0(0)	non tumor-specific	alt_5prime	no
MFAP3L_LS008	chr4:169995117|170005815:-	MFAP3L	microfibril associated protein 3 like	protein coding gene	no	ENST00000507601.1	0.615	0.034	0.685	0.005(45)	0.026(18)	0.006(109)	non tumor-specific	nAS	yes
CASD1_LS018	chr7:94551478|94552350:+	CASD1	CAS1 domain containing 1	protein coding gene	no	ENST00000297273.8	28.548	25.420	14.029	0.96(9193)	0.987(693)	0.968(16827)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
NDST4_LS004	chr4:114839548|114842676:-	NDST4	N-deacetylase and N-sulfotransferase 4	protein coding gene	yes	ENST00000613194.4;ENST00000504854.1	0.489	0.000	0.513	0.002(15)	0(0)	0(5)	non tumor-specific	exon_skip	yes
UN_PTP4A1_LS0011	chr6:63549498|63566098:-	PTP4A1	protein tyrosine phosphatase 4A1	protein coding gene	yes	.	0.915	0.123	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010615.4_LS0026	chr19:21424710|21425519:-	AC010615.4	-	protein coding gene	no	.	3.238	0.781	0.000	0.052(498)	0.053(37)	0(0)	non tumor-specific	nAS	no
ZIC3_LS001	chrX:137567751|137568902:+	ZIC3	Zic family member 3	protein coding gene	no	ENST00000287538.9;ENST00000370606.3	1.866	0.089	2.577	0.098(943)	0.01(7)	0.148(2572)	non tumor-specific	nAS	yes
SPCS2_LS001	chr11:74949346|74977110:+	SPCS2	signal peptidase complex subunit 2	protein coding gene	no	ENST00000528265.1	0.019	0.013	0.602	0.756(7239)	0.729(512)	0.005(81)	non tumor-specific	nAS	yes
ATP8A1_LS022	chr4:42549062|42551198:-	ATP8A1	ATPase phospholipid transporting 8A1	protein coding gene	no	ENST00000381668.9;ENST00000264449.14	11.140	13.809	6.556	0.608(5830)	0.815(572)	0.933(16223)	non tumor-specific	alt_5prime;exon_skip	yes
BPIFA1_LS004	chr20:33236050|33237755:+	BPIFA1	BPI fold containing family A member 1	protein coding gene	no	.;.	33.211	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
IL32_LS001	chr16:3065494|3065621:+	IL32	interleukin 32	protein coding gene	no	ENST00000528163.6	12.857	7.107	1.495	0.073(696)	0.137(96)	0.567(9855)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC004908.1_UP_LS0002	chr8:265558|265703:-	AC004908.1	-	lncRNA gene	no	.	2.402	1.101	0.000	0.022(209)	0.068(48)	0(0)	non tumor-specific	nAS	no
TRPM2_LS013	chr21:44391442|44391503:+	TRPM2	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	ENST00000300481.13	0.013	0.000	0.685	0(3)	0(0)	0.002(28)	non tumor-specific	intron_retention	yes
UN_LMO4_LS0034	chr1:87335315|87339536:+	LMO4	LIM domain only 4	protein coding gene	yes	.	2.280	0.254	0.000	0.009(89)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_FKBP10_LS0108	chr17:41822902|41822982:-	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	4.123	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ERVK13-1_LS0007	chr16:2663407|2667963:-	ERVK13-1	endogenous retrovirus group K13 member 1	lncRNA gene	no	.	1.221	0.903	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	nAS	no
AL353653.1_LS002	chr20:50645886|50659866:+	AL353653.1	-	lncRNA gene	no	ENST00000452336.1	0.883	0.000	0.700	0.002(23)	0(0)	0.016(283)	non tumor-specific	nAS	yes
SEZ6L2_LS025	chr16:29897984|29898941:-	SEZ6L2	seizure related 6 homolog like 2	protein coding gene	no	ENST00000346932.9;ENST00000350527.7;ENST00000308713.9;ENST00000617533.4	29.613	13.285	3.503	0.881(8443)	0.815(572)	0.747(12992)	non tumor-specific	alt_5prime;exon_skip	yes
CLASP1_LS038	chr2:121430177|121444939:-	CLASP1	cytoplasmic linker associated protein 1	protein coding gene	no	ENST00000397587.7;ENST00000455322.6	1.222	0.096	1.056	0.071(685)	0.038(27)	0.256(4450)	non tumor-specific	exon_skip	yes
UN_DHRS7_LS0012	chr14:60147407|60164208:+	DHRS7	dehydrogenase/reductase 7	protein coding gene	no	.	1.558	0.130	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CNOT6_LS0013	chr5:180553471|180554820:+	CNOT6	CCR4-NOT transcription complex subunit 6	protein coding gene	no	.	1.372	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NDUFA6-DT_LS028	chr22:42133410|42135135:+	NDUFA6-DT	NDUFA6 divergent transcript	lncRNA gene	no	ENST00000617009.4	0.326	0.035	0.698	0.008(80)	0.003(2)	0.009(148)	non tumor-specific	nAS	yes
UN_AL355312.5_LS0004	chr6:149864344|149885585:+	AL355312.5	-	protein coding gene	no	.	1.286	0.068	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
SELENOP_LS021	chr5:42808366|42825441:-	SELENOP	selenoprotein P	protein coding gene	no	ENST00000506577.5	0.018	0.398	1.093	0.376(3607)	0.746(524)	0.032(552)	non tumor-specific	alt_5prime;exon_skip	yes
SUGP1_LS012	chr19:19302443|19303348:-	SUGP1	SURP and G-patch domain containing 1	protein coding gene	no	ENST00000589144.5	0.120	0.084	0.864	0.279(2669)	0.177(124)	0.311(5404)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRRC38_UP_LS0008	chr1:13617486|13631832:-	LRRC38	leucine rich repeat containing 38	protein coding gene	no	.	3.392	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NDUFA3_LS015	chr19:54106011|54106764:+	NDUFA3	NADH:ubiquinone oxidoreductase subunit A3	protein coding gene	no	.;.	25.565	2.190	0.000	0.009(91)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_APOE_LS0087	chr19:44908692|44909073:-	APOE	apolipoprotein E	protein coding gene	no	.	22.118	0.174	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMPD3_LS012	chr16:68371092|68372292:-	SMPD3	sphingomyelin phosphodiesterase 3	protein coding gene	no	ENST00000566723.1	0.253	0.184	0.739	0.026(246)	0.027(19)	0.024(410)	non tumor-specific	exon_skip;intron_retention	yes
SIRT7_LS031	chr17:81917967|81921219:-	SIRT7	sirtuin 7	protein coding gene	no	ENST00000572902.5	0.290	0.134	0.675	0.462(4426)	0.467(328)	0.029(506)	non tumor-specific	nAS	yes
UN_SERPINB8_LS0008	chr18:64004880|64006361:+	SERPINB8	serpin family B member 8	protein coding gene	no	.	0.346	0.505	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TAF13_UP_LS0004	chr1:109078646|109083215:-	TAF13	TATA-box binding protein associated factor 13	protein coding gene	no	.	1.748	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GTPBP2_LS021	chr6:43626948|43628789:-	GTPBP2	GTP binding protein 2	protein coding gene	no	ENST00000442748.5	0.045	0.048	0.703	0.256(2454)	0.242(170)	0.159(2771)	non tumor-specific	alt_5prime	yes
OPN5_LS001	chr6:47782196|47786515:+	OPN5	opsin 5	protein coding gene	no	ENST00000489301.6;ENST00000638973.1;ENST00000371211.6;ENST00000393699.2	1.133	0.000	0.703	0(3)	0(0)	0.003(55)	non tumor-specific	nAS	yes
AC097467.3_LS001	chr4:155173796|155174158:+	AC097467.3	-	lncRNA gene	no	ENST00000630664.2	9.695	0.000	0.936	0(2)	0(0)	0.012(206)	non tumor-specific	nAS	yes
NUP155_LS037	chr5:37364384|37370666:-	NUP155	nucleoporin 155	protein coding gene	no	ENST00000381843.6;ENST00000507675.1	0.403	0.412	0.823	0.46(4406)	0.536(376)	0.406(7057)	non tumor-specific	alt_5prime	yes
ARMC6_LS032	chr19:19042877|19043992:+	ARMC6	armadillo repeat containing 6	protein coding gene	no	ENST00000392335.6;ENST00000535612.5;ENST00000537263.5;ENST00000541725.5;ENST00000269932.10;ENST00000540792.5;ENST00000536098.5;ENST00000541898.5;ENST00000539985.5;ENST00000538663.5;ENST00000392336.7;ENST00000535758.1	47.989	22.670	24.899	0.993(9518)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
SH2D5_LS006	chr1:20724251|20724396:-	SH2D5	SH2 domain containing 5	protein coding gene	no	ENST00000375031.5;ENST00000444387.6	3.495	2.964	1.527	0.204(1958)	0.048(34)	0.354(6145)	non tumor-specific	alt_3prime;alt_5prime	yes
AC007003.1_LS001	chr7:76903112|76911105:+	AC007003.1	-	lncRNA gene	no	ENST00000472463.1	0.064	0.000	0.641	0.003(25)	0(0)	0.001(18)	non tumor-specific	nAS	yes
NPRL3_LS023	chr16:130591|138232:-	NPRL3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	ENST00000457916.5	0.019	0.079	0.726	0.539(5165)	0.509(357)	0.249(4322)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TAPBP_LS0017	chr6:33299879|33300097:+	TAPBP	TAP binding protein	protein coding gene	no	.	3.220	0.086	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
PYGL_LS022	chr14:50937837|50944161:-	PYGL	glycogen phosphorylase L	protein coding gene	no	ENST00000532462.5;ENST00000216392.7;ENST00000530336.2	24.840	10.866	15.668	0.93(8906)	0.962(675)	0.959(16675)	non tumor-specific	alt_3prime;exon_skip	yes
H2AFZ_LS001	chr4:99948523|99948811:-	H2AFZ	H2A.Z variant histone 1	protein coding gene	no	ENST00000296417.5;ENST00000511319.5;ENST00000529158.5	685.918	194.710	322.133	0.891(8536)	0.905(635)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
OPA1_LS021	chr3:193626202|193631612:+	OPA1	OPA1 mitochondrial dynamin like GTPase	protein coding gene	no	ENST00000361715.6;ENST00000361150.6;ENST00000361510.7;ENST00000361908.8;ENST00000646277.1;ENST00000434811.2;ENST00000495476.1	1.932	2.495	4.857	0.939(8998)	0.979(687)	0.937(16289)	non tumor-specific	exon_skip	yes
FAM192A_LS049	chr16:57175700|57178710:-	FAM192A	proteasome activator subunit 3 interacting protein 1	protein coding gene	no	ENST00000566681.1;ENST00000566681.1	0.018	0.005	0.708	0.093(889)	0.084(59)	0.084(1463)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF667_LS013	chr19:56468935|56471699:-	ZNF667	zinc finger protein 667	protein coding gene	no	ENST00000589652.1	0.365	0.015	0.693	0.002(22)	0.001(1)	0.02(352)	non tumor-specific	nAS	yes
SELENOV_LS004	chr19:39518793|39518903:+	SELENOV	selenoprotein V	protein coding gene	no	ENST00000335426.8;ENST00000423711.4;ENST00000622070.2	1.899	0.514	1.242	0.049(473)	0.084(59)	0.089(1552)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LBX2_LS0001	chr2:74497586|74497778:-	LBX2	ladybird homeobox 2	protein coding gene	no	.	1.065	0.023	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
PLA2G6_LS055	chr22:38169471|38180325:-	PLA2G6	phospholipase A2 group VI	protein coding gene	no	ENST00000455341.2	0.028	0.014	0.635	0.133(1272)	0.147(103)	0.01(181)	non tumor-specific	alt_5prime	yes
UN_SHTN1_LS0040	chr10:116968712|116977951:-	SHTN1	shootin 1	protein coding gene	no	.	0.318	0.278	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SSX1_LS0001	chrX:48255432|48256051:+	SSX1	SSX family member 1	protein coding gene	yes	.	7.873	0.000	0.000	0.013(128)	0(0)	0(0)	non tumor-specific	nAS	no
PEX1_LS002	chr7:92489423|92489714:-	PEX1	peroxisomal biogenesis factor 1	protein coding gene	no	ENST00000438045.5;ENST00000248633.8;ENST00000484913.5;ENST00000428214.5;ENST00000469417.1	42.692	27.022	32.163	0.994(9525)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC01915_LS006	chr18:24692670|24694256:+	LINC01915	long intergenic non-protein coding RNA 1915	lncRNA gene	no	ENST00000648293.1	4.206	0.484	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	yes
UN_DOCK6_LS0086	chr19:11229852|11233203:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	.	2.768	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
LINC00703_LS002	chr10:4406573|4408455:+	LINC00703	long intergenic non-protein coding RNA 703	lncRNA gene	no	ENST00000434902.1	0.083	0.001	0.709	0.001(13)	0.001(1)	0.007(113)	non tumor-specific	nAS	yes
UN_DNAJA4_LS0012	chr15:78269935|78270497:+	DNAJA4	DnaJ heat shock protein family (Hsp40) member A4	protein coding gene	no	.	2.606	0.517	0.000	0.006(53)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_AC010883.1_LS0007	chr2:43229616|43232735:+	AC010883.1	-	lncRNA gene	no	.	2.128	0.437	0.000	0.012(113)	0.028(20)	0(0)	non tumor-specific	nAS	no
PRTG_LS015	chr15:55679445|55680054:-	PRTG	protogenin	protein coding gene	no	ENST00000389286.8	3.050	1.330	0.966	0.131(1255)	0.283(199)	0.386(6706)	non tumor-specific	nAS	yes
CHN1_LS030	chr2:174952202|175005206:-	CHN1	chimerin 1	protein coding gene	no	ENST00000488080.5;ENST00000488080.5	0.030	0.065	0.724	0.078(752)	0.098(69)	0.148(2574)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SPAG16_LS0013	chr2:213342888|213343716:+	SPAG16	sperm associated antigen 16	protein coding gene	no	.	3.625	0.134	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KLK2_LS001	chr19:50861679|50873183:+	KLK2	kallikrein related peptidase 2	protein coding gene	no	ENST00000593493.5	0.014	0.000	0.798	0.023(220)	0.02(14)	0.001(24)	non tumor-specific	nAS	yes
UN_ANKRD24_LS0006	chr19:4184727|4186390:+	ANKRD24	ankyrin repeat domain 24	protein coding gene	no	.	1.665	0.025	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF385A_LS026	chr12:54384564|54385235:-	ZNF385A	zinc finger protein 385A	protein coding gene	no	ENST00000546919.5	0.055	0.018	0.954	0.484(4636)	0.477(335)	0.257(4467)	non tumor-specific	exon_skip;mutex_exons	yes
GALNT11_LS014	chr7:152100921|152103112:+	GALNT11	polypeptide N-acetylgalactosaminyltransferase 11	protein coding gene	no	ENST00000430044.6;ENST00000423337.5;ENST00000434507.5;ENST00000415421.5;ENST00000422997.6;ENST00000419245.5;ENST00000447796.1	29.185	25.334	28.409	0.986(9450)	0.994(698)	0.978(16996)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MLXIPL_LS0030	chr7:73599641|73605688:-	MLXIPL	MLX interacting protein like	protein coding gene	no	.	8.123	1.029	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_TXNL4B_LS0009	chr16:72056578|72057402:-	TXNL4B	thioredoxin like 4B	protein coding gene	no	.	27.538	156.715	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
CLUAP1_LS003	chr16:3502084|3504720:+	CLUAP1	clusterin associated protein 1	protein coding gene	no	ENST00000576117.1	0.515	0.216	0.808	0.443(4249)	0.417(293)	0.37(6437)	non tumor-specific	nAS	yes
AL022068.1_LS001	chr6:19325798|19388547:-	AL022068.1	-	lncRNA gene	no	ENST00000636202.1	1.500	0.000	0.697	0.001(6)	0(0)	0.007(130)	non tumor-specific	nAS	yes
WDR60_LS003	chr7:158856750|158869855:+	WDR60	dynein 2 intermediate chain 1	protein coding gene	no	ENST00000407559.7;ENST00000407559.7	4.222	3.042	8.608	0.869(8322)	0.917(644)	0.955(16597)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FP236383.1_UP_LS0775	chr21:8259545|8259604:+	FP236383.1	-	lncRNA gene	no	.	56.544	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HGS_LS0062	chr17:81701931|81702016:-	HGS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein coding gene	no	.	6.539	1.342	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP8B1_LS011	chr18:57659815|57661174:-	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	ENST00000642462.1;ENST00000648039.1	0.865	2.942	0.000	0.005(45)	0.017(12)	0(0)	non tumor-specific	exon_skip	yes
UN_FLNA_LS0199	chrX:154349726|154350130:+	FLNA	filamin A	protein coding gene	yes	.	4.355	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_UP_LS0486	chr14:106410534|106802733:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	11.564	5.948	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02401_LS002	chr12:103549597|103550462:+	LINC02401	long intergenic non-protein coding RNA 2401	lncRNA gene	no	ENST00000550185.5;ENST00000551174.1	2.547	0.000	0.662	0(2)	0(0)	0.003(57)	non tumor-specific	nAS	yes
CPNE6_LS006	chr14:24071435|24071600:+	CPNE6	copine 6	protein coding gene	no	ENST00000557889.1	0.142	0.051	2.971	0.019(184)	0.047(33)	0.163(2840)	non tumor-specific	intron_retention	yes
UN_CCDC85C_LS0006	chr14:99572832|99580021:-	CCDC85C	coiled-coil domain containing 85C	protein coding gene	no	.	1.900	1.070	0.000	0.012(117)	0.033(23)	0(0)	non tumor-specific	exon_skip	no
UN_HLA-DQA1_UP_LS0133	chr6:32554784|32580766:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	.	61.539	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
ZMYM1_LS015	chr1:35110447|35111772:+	ZMYM1	zinc finger MYM-type containing 1	protein coding gene	no	ENST00000650449.1;ENST00000417119.5;ENST00000611874.4;ENST00000359858.8;ENST00000475654.5;ENST00000373329.5;ENST00000373330.1;ENST00000463393.1	4.973	2.711	2.778	0.844(8090)	0.889(624)	0.863(14992)	non tumor-specific	alt_3prime;exon_skip	yes
SYCP1_LS019	chr1:114895509|114910397:+	SYCP1	synaptonemal complex protein 1	protein coding gene	no	ENST00000369522.7;ENST00000455987.5;ENST00000618516.4;ENST00000613524.4;ENST00000369518.1	10.719	0.711	0.715	0.004(41)	0.003(2)	0.043(756)	non tumor-specific	nAS	yes
PPFIBP2_LS014	chr11:7593224|7597560:+	PPFIBP2	PPFIA binding protein 2	protein coding gene	no	ENST00000299492.8;ENST00000527790.5;ENST00000524548.5;ENST00000529575.5;ENST00000533792.5;ENST00000650027.1;ENST00000525597.5	14.041	10.171	10.759	0.881(8438)	0.953(669)	0.971(16870)	non tumor-specific	exon_skip	yes
UN_ERC2_LS0036	chr3:56296435|56409041:-	ERC2	ELKS/RAB6-interacting/CAST family member 2	protein coding gene	no	.	2.491	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NELFA_LS0057	chr4:2040092|2040864:+	NELFA	negative elongation factor complex member A	protein coding gene	no	.	8.128	1.657	0.000	0.069(661)	0.067(47)	0(0)	non tumor-specific	nAS	no
UN_AC253536.2_UP_LS0002	chr22:23960917|23963752:+	AC253536.2	-	pseudogene	no	.	0.590	0.277	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
TBC1D5_LS004	chr3:17185208|17214207:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	ENST00000253692.11;ENST00000429383.8;ENST00000414318.2;ENST00000446818.6;ENST00000429924.6	27.399	19.982	14.069	0.92(8811)	0.974(684)	0.973(16919)	non tumor-specific	nAS	yes
UN_AC091576.1_LS0013	chr18:60498318|60498556:-	AC091576.1	-	lncRNA gene	no	.	0.838	4.342	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL365361.1_UP_LS0001	chr1:110659586|110668223:-	AL365361.1	-	lncRNA gene	no	.	4.306	2.566	0.000	0.226(2169)	0.369(259)	0(0)	non tumor-specific	nAS	no
UN_AC011298.3_UP_LS0007	chr2:240632060|240635174:+	AC011298.3	-	pseudogene	no	.	11.225	2.306	0.000	0.021(200)	0.011(8)	0(0)	non tumor-specific	nAS	no
MOK_LS010	chr14:102229362|102229457:-	MOK	MOK protein kinase	protein coding gene	no	ENST00000521766.5	0.088	0.131	0.990	0.247(2370)	0.219(154)	0.427(7414)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LINC01473_LS0001	chr2:186033802|186039500:-	LINC01473	long intergenic non-protein coding RNA 1473	lncRNA gene	no	.	3.808	0.257	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0086	chr14:106349541|106606372:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	6.729	14.062	0.000	0.007(71)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_AL592295.4_LS0007	chr1:161405845|161419669:-	AL592295.4	-	lncRNA gene	no	.	2.652	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NABP1_LS0014	chr2:191685240|191685599:+	NABP1	nucleic acid binding protein 1	protein coding gene	no	.	3.358	0.518	0.000	0.003(33)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RPL39_LS002	chrX:119786732|119789908:-	RPL39	ribosomal protein L39	protein coding gene	no	ENST00000468844.1;ENST00000361575.3	2516.871	1130.365	1271.814	0.934(8950)	0.969(680)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM225B_LS008	chr7:99606894|99607673:+	TMEM225B	transmembrane protein 225B	protein coding gene	no	ENST00000431679.5;ENST00000453227.5	2.010	0.868	3.749	0.437(4183)	0.601(422)	0.895(15562)	non tumor-specific	exon_skip	yes
UN_MMP11_LS0042	chr22:23781036|23781059:-	MMP11	matrix metallopeptidase 11	protein coding gene	no	.	3.416	0.857	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHRDL1_LS0001	chrX:110679425|110681513:-	CHRDL1	chordin like 1	protein coding gene	no	.	2.592	0.771	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_ABR_LS0124	chr17:1100735|1106563:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	2.388	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_MRVI1_LS0032	chr11:10617203|10623778:-	MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein coding gene	yes	.	1.835	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ACSF2_LS046	chr17:50472524|50473665:+	ACSF2	acyl-CoA synthetase family member 2	protein coding gene	no	ENST00000511147.1	0.322	0.464	1.108	0.745(7140)	0.826(580)	0.482(8376)	non tumor-specific	alt_5prime	yes
EVX1-AS_LS004	chr7:27242010|27242630:-	EVX1-AS	EVX1 antisense RNA	lncRNA gene	no	ENST00000519218.1	0.803	0.070	1.390	0.022(215)	0.019(13)	0.029(497)	non tumor-specific	nAS	yes
UN_GPM6B_LS0022	chrX:13807769|13888981:-	GPM6B	glycoprotein M6B	protein coding gene	yes	.	1.630	0.599	0.000	0.003(25)	0.036(25)	0(0)	non tumor-specific	exon_skip	no
UN_ADGRA3_LS0016	chr4:22398138|22401431:-	ADGRA3	adhesion G protein-coupled receptor A3	protein coding gene	no	.	3.595	2.907	0.000	0.084(803)	0.105(74)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
EXOC2_LS005	chr6:497489|499645:-	EXOC2	exocyst complex component 2	protein coding gene	no	ENST00000230449.8	34.457	20.147	20.376	0.992(9501)	0.996(699)	0.979(17014)	non tumor-specific	nAS	yes
UN_AC092185.1_UP_LS0002	chr3:108738520|108741978:-	AC092185.1	-	pseudogene	no	.	2.390	1.992	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
SNRNP200_LS015	chr2:96278711|96278809:-	SNRNP200	small nuclear ribonucleoprotein U5 subunit 200	protein coding gene	no	ENST00000323853.9;ENST00000497539.5;ENST00000429650.1;ENST00000484372.1	296.575	136.600	159.310	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_FP236383.3_UP_LS0114	chr21:8445072|8445349:-	FP236383.3	-	lncRNA gene	no	.	161.955	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL138767.3_UP_LS0007	chr10:87606411|87607948:+	AL138767.3	-	lncRNA gene	no	.	7.487	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ATP1A3_LS004	chr19:41968915|41969435:-	ATP1A3	ATPase Na+/K+ transporting subunit alpha 3	protein coding gene	no	ENST00000441343.5;ENST00000648268.1;ENST00000302102.9;ENST00000602133.5;ENST00000545399.6;ENST00000543770.5	86.813	104.424	3.602	0.377(3616)	0.191(134)	0.7(12162)	non tumor-specific	nAS	yes
LINC00205_LS003	chr21:45289438|45290471:+	LINC00205	long intergenic non-protein coding RNA 205	no	no	ENST00000400362.3;ENST00000454115.6;ENST00000647108.1	3.858	2.670	3.356	0.768(7360)	0.772(542)	0.88(15302)	non tumor-specific	nAS	yes
UN_HMGB1P1_UP_LS0001	chr20:57489041|57489086:-	HMGB1P1	high mobility group box 1 pseudogene 1	pseudogene	no	.	1.041	0.226	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC4_LS003	chr7:128030996|128031507:-	LRRC4	leucine rich repeat containing 4	protein coding gene	yes	ENST00000478726.1	0.570	0.303	0.727	0.068(649)	0.074(52)	0.015(269)	non tumor-specific	intron_retention	yes
UN_AP001282.2_UP_LS0023	chr11:106616389|106618210:+	AP001282.2	-	pseudogene	no	.	3.030	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00484_LS0011	chr9:91159807|91182469:+	LINC00484	long intergenic non-protein coding RNA 484	lncRNA gene	no	.	2.095	0.758	0.000	0.001(13)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_SERINC3_LS0021	chr20:44501300|44502325:-	SERINC3	serine incorporator 3	protein coding gene	no	.	5.993	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_AL645929.1_UP_LS0192	chr6:29896812|29944230:-	AL645929.1	-	pseudogene	no	.	65.642	17.095	0.000	0.011(107)	0.007(5)	0(0)	non tumor-specific	nAS	no
MAPK6_LS016	chr15:52050137|52058633:+	MAPK6	mitogen-activated protein kinase 6	protein coding gene	no	ENST00000261845.6	44.607	29.036	17.834	0.967(9268)	0.989(694)	0.975(16949)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
TBC1D1_LS001	chr4:37891348|37902003:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	ENST00000508802.5;ENST00000261439.8;ENST00000402522.1	2.015	2.200	6.488	0.759(7275)	0.897(630)	0.925(16079)	non tumor-specific	nAS	yes
CMAS_LS001	chr12:22046563|22055149:+	CMAS	cytidine monophosphate N-acetylneuraminic acid synthetase	protein coding gene	no	ENST00000229329.6;ENST00000534981.5	17.591	16.337	33.760	0.989(9475)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MELK_LS0022	chr9:36632292|36633102:+	MELK	maternal embryonic leucine zipper kinase	protein coding gene	no	.	2.329	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL353072.2_UP_LS0003	chr1:195399020|195462516:-	AL353072.2	-	lncRNA gene	no	.	3.173	0.702	0.000	0.008(75)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SPAG9_LS0018	chr17:50976016|50977108:-	SPAG9	sperm associated antigen 9	protein coding gene	yes	.	3.846	1.821	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NCLN_LS003	chr19:3186214|3196183:+	NCLN	nicalin	protein coding gene	no	ENST00000588428.5	0.379	0.161	0.605	0.379(3635)	0.276(194)	0.049(845)	non tumor-specific	exon_skip	yes
DIAPH1_LS008	chr5:141524229|141524676:-	DIAPH1	diaphanous related formin 1	protein coding gene	no	ENST00000643718.1;ENST00000468119.3	0.041	0.019	1.111	0.592(5670)	0.607(426)	0.199(3462)	non tumor-specific	alt_5prime;intron_retention	yes
CACNB1_LS001	chr17:39175657|39177350:-	CACNB1	calcium voltage-gated channel auxiliary subunit beta 1	protein coding gene	no	ENST00000394303.7;ENST00000622445.4;ENST00000539338.6	9.847	11.348	14.744	0.847(8118)	0.823(578)	0.972(16896)	non tumor-specific	alt_5prime	yes
UN_CRTC2_LS0013	chr1:153948155|153948276:+	CRTC2	CREB regulated transcription coactivator 2	protein coding gene	no	.	4.675	0.686	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HNRNPM_LS0055	chr19:8485825|8485922:-	HNRNPM	heterogeneous nuclear ribonucleoprotein M	protein coding gene	no	.	4.196	0.574	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
C1QTNF12_LS006	chr1:1244105|1244191:-	C1QTNF12	C1q and TNF related 12	protein coding gene	no	ENST00000330388.2	6.603	2.514	2.023	0.416(3984)	0.295(207)	0.817(14209)	non tumor-specific	intron_retention	yes
DCUN1D4_LS003	chr4:51843267|51863437:+	DCUN1D4	defective in cullin neddylation 1 domain containing 4	protein coding gene	no	ENST00000509376.5;ENST00000511675.5;ENST00000334635.9;ENST00000381441.7;ENST00000504113.5;ENST00000502930.5;ENST00000513800.5;ENST00000477560.5	5.751	5.103	14.364	0.945(9052)	0.983(690)	0.963(16745)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COL1A1_LS0534	chr17:50186900|50201496:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	81.976	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FLNA_LS0470	chrX:154360007|154360359:+	FLNA	filamin A	protein coding gene	yes	.	3.281	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XPO6_LS0007	chr16:28098278|28098350:+	XPO6	exportin 6	protein coding gene	no	.	2.555	0.483	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC021180.1_LS001	chr4:74419295|74440279:-	AC021180.1	-	lncRNA gene	no	ENST00000508581.1	0.159	0.000	0.550	0.002(17)	0(0)	0(6)	non tumor-specific	nAS	yes
PSPH_LS021	chr7:56034103|56051314:-	PSPH	phosphoserine phosphatase	protein coding gene	no	.;.;.	0.190	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PER3_LS0033	chr1:7826710|7827121:+	PER3	period circadian regulator 3	protein coding gene	no	.	4.826	1.618	0.000	0.004(43)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_HPS3_LS0010	chr3:149140498|149141070:+	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	.	0.580	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SDF4_LS0094	chr1:1228681|1228842:+	SDF4	stromal cell derived factor 4	protein coding gene	no	.	1.784	1.007	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMG7_LS0007	chr1:183501267|183502300:+	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	.	0.282	0.039	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_GPT_LS0015	chr8:144506048|144506232:+	GPT	glutamic--pyruvic transaminase	protein coding gene	no	.	4.756	4.104	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
SHISA6_LS004	chr17:11263526|11379414:+	SHISA6	shisa family member 6	protein coding gene	no	ENST00000441885.7;ENST00000432116.7;ENST00000343478.7	2.179	1.726	2.139	0.364(3491)	0.631(443)	0.572(9946)	non tumor-specific	exon_skip	yes
UN_LPIN3_LS0027	chr20:41354737|41354825:+	LPIN3	lipin 3	protein coding gene	no	.	5.183	1.869	0.000	0.094(901)	0.048(34)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MSRB3_LS001	chr12:65278865|65306863:+	MSRB3	methionine sulfoxide reductase B3	protein coding gene	no	ENST00000535664.5	0.264	0.262	1.460	0.157(1507)	0.406(285)	0.526(9142)	non tumor-specific	exon_skip	yes
UN_ADM2_LS0007	chr22:50484350|50484659:-	ADM2	adrenomedullin 2	protein coding gene	no	.	1.524	0.325	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
LRRC77P_LS008	chr3:167880395|167883188:+	LRRC77P	leucine rich repeat containing 77, pseudogene	pseudogene	no	ENST00000636485.1;ENST00000475324.1	1.291	0.326	1.219	0.004(42)	0.006(4)	0.33(5740)	non tumor-specific	nAS	yes
RPA2_LS005	chr1:27897121|27897633:-	RPA2	replication protein A2	protein coding gene	no	ENST00000373912.7;ENST00000373909.7;ENST00000313433.11;ENST00000444045.1	110.951	59.751	48.054	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
PSMD12_LS003	chr17:67344780|67345745:-	PSMD12	proteasome 26S subunit, non-ATPase 12	protein coding gene	no	ENST00000356126.7;ENST00000357146.4;ENST00000584008.5	93.963	46.328	47.365	0.995(9537)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
AC023202.1_LS001	chr8:24170115|24174098:-	AC023202.1	-	lncRNA gene	no	ENST00000521681.1	0.445	0.016	0.713	0.006(53)	0.001(1)	0.014(235)	non tumor-specific	nAS	yes
UN_ABCG8_LS0007	chr2:43837955|43838037:-	ABCG8	ATP binding cassette subfamily G member 8	protein coding gene	no	.	3.169	2.947	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
KIF18B_LS004	chr17:44928578|44928819:-	KIF18B	kinesin family member 18B	protein coding gene	no	ENST00000587309.5;ENST00000593135.5;ENST00000590129.1	12.806	1.713	1.637	0.721(6904)	0.197(138)	0.408(7097)	non tumor-specific	alt_3prime	yes
TPM4_LS008	chr19:16076697|16081913:+	TPM4	tropomyosin 4	protein coding gene	no	ENST00000300933.8;ENST00000645471.1;ENST00000647037.1;ENST00000587201.5;ENST00000643579.1;ENST00000643494.1;ENST00000646575.1	52.361	40.337	139.009	0.968(9279)	0.954(670)	0.979(17021)	non tumor-specific	exon_skip	yes
ZSCAN30_LS013	chr18:35264455|35290131:-	ZSCAN30	zinc finger and SCAN domain containing 30	protein coding gene	no	ENST00000592278.1;ENST00000592278.1	0.174	0.438	1.405	0.456(4368)	0.533(374)	0.695(12086)	non tumor-specific	alt_5prime;exon_skip	yes
ABI3BP_LS102	chr3:100945676|100993306:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000530236.5	0.185	0.010	0.659	0.012(111)	0.021(15)	0.092(1601)	non tumor-specific	exon_skip	yes
UN_CAPN9_LS0008	chr1:230755406|230762653:+	CAPN9	calpain 9	protein coding gene	no	.	2.390	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
PPCS_LS002	chr1:42456628|42457247:+	PPCS	phosphopantothenoylcysteine synthetase	protein coding gene	no	ENST00000372556.3	23.187	23.866	27.342	0.826(7910)	0.922(647)	0.978(16996)	non tumor-specific	alt_5prime;intron_retention	yes
PRMT8_LS002	chr12:3491700|3540606:+	PRMT8	protein arginine methyltransferase 8	protein coding gene	no	ENST00000382622.3;ENST00000543701.5	1.105	1.288	4.384	0.073(704)	0.013(9)	0.131(2281)	non tumor-specific	exon_skip	yes
UN_PPP1R16A_LS0097	chr8:144500761|144500859:+	PPP1R16A	protein phosphatase 1 regulatory subunit 16A	protein coding gene	no	.	2.057	1.199	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FLCN_LS009	chr17:17224143|17226176:-	FLCN	folliculin	protein coding gene	yes	ENST00000285071.8;ENST00000389169.9;ENST00000417064.1	29.135	20.864	27.193	0.981(9395)	0.991(696)	0.979(17016)	non tumor-specific	nAS	yes
RMDN3_LS006	chr15:40737726|40737965:-	RMDN3	regulator of microtubule dynamics 3	protein coding gene	no	ENST00000260385.10;ENST00000560588.5;ENST00000558777.5;ENST00000338376.7;ENST00000558232.5;ENST00000560779.5;ENST00000558560.1;ENST00000260385.10;ENST00000560588.5;ENST00000558777.5;ENST00000338376.7;ENST00000558232.5;ENST00000560779.5;ENST00000558560.1	87.915	65.173	51.854	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TMEM126B_LS009	chr11:85628688|85634086:+	TMEM126B	transmembrane protein 126B	protein coding gene	no	ENST00000526822.5;ENST00000531274.1	0.104	0.230	2.697	0.755(7233)	0.793(557)	0.889(15453)	non tumor-specific	exon_skip	yes
UN_GNL3L_LS0008	chrX:54532585|54537048:+	GNL3L	G protein nucleolar 3 like	protein coding gene	no	.	1.070	0.024	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HSPH1_LS017	chr13:31151160|31152852:-	HSPH1	heat shock protein family H (Hsp110) member 1	protein coding gene	no	.;.	1.919	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM159_LS0009	chr16:21170608|21174010:+	TMEM159	transmembrane protein 159	protein coding gene	no	.	6.958	1.402	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
FUBP1_LS025	chr1:77960495|77962770:-	FUBP1	far upstream element binding protein 1	protein coding gene	yes	ENST00000294623.8;ENST00000370768.6;ENST00000370767.5	135.641	70.506	58.952	0.995(9529)	0.994(698)	0.979(17021)	non tumor-specific	alt_5prime;intron_retention	yes
CELF4_LS034	chr18:37321881|37485525:-	CELF4	CUGBP Elav-like family member 4	protein coding gene	no	ENST00000334919.9;ENST00000591287.5;ENST00000420428.6;ENST00000590112.5;ENST00000601019.5;ENST00000361795.9;ENST00000603232.6;ENST00000591282.5;ENST00000588597.5;ENST00000601392.5;ENST00000587819.5;ENST00000589229.5;ENST00000587924.1	3.796	5.568	5.219	0.104(995)	0.037(26)	0.323(5612)	non tumor-specific	nAS	yes
TACC2_LS031	chr10:122211422|122215391:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	ENST00000440764.2;ENST00000440764.2	0.020	0.028	1.023	0.335(3212)	0.504(354)	0.468(8136)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PPP2R3C_LS033	chr14:35116737|35121902:-	PPP2R3C	protein phosphatase 2 regulatory subunit B''gamma	protein coding gene	no	ENST00000261475.9;ENST00000554361.5;ENST00000557773.5;ENST00000555630.5;ENST00000554563.5;ENST00000555644.5;ENST00000557278.1;ENST00000556254.1;ENST00000261475.9;ENST00000554361.5;ENST00000557773.5;ENST00000555630.5;ENST00000554563.5;ENST00000555644.5;ENST00000557278.1;ENST00000556254.1;ENST00000261475.9;ENST00000554361.5;ENST00000557773.5;ENST00000555630.5;ENST00000554563.5;ENST00000555644.5;ENST00000557278.1;ENST00000556254.1	6.037	3.990	16.060	0.967(9269)	0.984(691)	0.978(17008)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
SHTN1_LS024	chr10:117048510|117126307:-	SHTN1	shootin 1	protein coding gene	no	ENST00000392901.10	3.281	0.000	0.892	0.015(143)	0(0)	0.001(24)	non tumor-specific	exon_skip	yes
EPOR_LS007	chr19:11381209|11381930:-	EPOR	erythropoietin receptor	protein coding gene	no	.;.	0.638	0.170	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LIMS4_LS012	chr2:110468254|110472597:-	LIMS4	LIM zinc finger domain containing 4	protein coding gene	no	ENST00000632758.1;ENST00000632897.1;ENST00000633364.1;ENST00000413601.3;ENST00000480598.1	4.193	3.628	0.614	0.782(7496)	0.892(626)	0.037(651)	non tumor-specific	nAS	yes
LINGO1-AS2_LS001	chr15:77660183|77666960:+	LINGO1-AS2	LINGO1 antisense RNA 2	lncRNA gene	no	ENST00000557799.1	0.457	0.001	0.656	0.001(10)	0.001(1)	0.003(51)	non tumor-specific	nAS	yes
CSNK1G1_LS012	chr15:64188485|64203082:-	CSNK1G1	casein kinase 1 gamma 1	protein coding gene	no	ENST00000607537.6;ENST00000634654.1;ENST00000634811.1;ENST00000634302.1;ENST00000634909.1	2.143	1.146	1.000	0.515(4938)	0.534(375)	0.478(8317)	non tumor-specific	exon_skip	yes
UN_SLC30A2_UP_LS0002	chr1:26067495|26112007:-	SLC30A2	solute carrier family 30 member 2	protein coding gene	no	.	3.439	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBC1D8_LS0023	chr2:101028432|101033544:-	TBC1D8	TBC1 domain family member 8	protein coding gene	no	.	8.007	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM161B-AS1_UP_LS0009	chr5:87702807|87703920:+	TMEM161B-AS1	TMEM161B antisense RNA 1	lncRNA gene	no	.	2.923	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
GALNT14_LS003	chr2:30912342|30929395:-	GALNT14	polypeptide N-acetylgalactosaminyltransferase 14	protein coding gene	no	ENST00000486564.5	1.390	0.388	0.943	0.414(3962)	0.322(226)	0.238(4137)	non tumor-specific	exon_skip	yes
AC104463.2_LS001	chr1:202604335|202605048:+	AC104463.2	-	lncRNA gene	no	ENST00000428573.1	0.755	0.000	0.664	0(4)	0(0)	0.002(29)	non tumor-specific	nAS	yes
CCDC57_LS043	chr17:82194139|82195263:-	CCDC57	coiled-coil domain containing 57	protein coding gene	no	ENST00000389641.8;ENST00000392347.5;ENST00000392343.3;ENST00000578910.1;ENST00000581625.2	5.542	3.342	9.394	0.877(8404)	0.842(591)	0.968(16824)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC246787.2_UP_LS1356	chr14:105742239|105769953:+	AC246787.2	-	lncRNA gene	no	.	11.529	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BX005266.2_LS003	chr9:62533113|62533658:+	BX005266.2	-	lncRNA gene	no	ENST00000420615.1	0.473	0.225	1.254	0.447(4286)	0.454(319)	0.579(10061)	non tumor-specific	nAS	yes
UN_ZNF429_LS0044	chr19:21527511|21529084:+	ZNF429	zinc finger protein 429	protein coding gene	no	.	1.696	0.601	0.000	0.013(124)	0.028(20)	0(0)	non tumor-specific	nAS	no
KLC3_LS003	chr19:45340846|45345534:+	KLC3	kinesin light chain 3	protein coding gene	no	ENST00000494686.1;ENST00000391946.6;ENST00000585434.5;ENST00000589837.5	3.280	1.337	2.961	0.563(5393)	0.598(420)	0.4(6953)	non tumor-specific	alt_5prime;exon_skip	yes
FAM177A1_LS008	chr14:35046628|35050033:+	FAM177A1	family with sequence similarity 177 member A1	protein coding gene	no	ENST00000554052.2;ENST00000554052.2;ENST00000554052.2	20.800	11.780	15.144	0.957(9169)	0.963(676)	0.978(16993)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ATP6V0E1P3_UP_LS0001	chr2:33405950|33436440:+	ATP6V0E1P3	ATPase H+ transporting V0 subunit e1 pseudogene 3	pseudogene	no	.	2.379	0.377	0.000	0.015(142)	0.017(12)	0(0)	non tumor-specific	nAS	no
BCO1_LS009	chr16:81280962|81285540:+	BCO1	beta-carotene oxygenase 1	protein coding gene	no	ENST00000258168.6;ENST00000563804.5	4.237	2.693	1.007	0.332(3184)	0.329(231)	0.238(4141)	non tumor-specific	exon_skip	yes
PHTF2_LS033	chr7:77951712|77953769:+	PHTF2	putative homeodomain transcription factor 2	protein coding gene	no	ENST00000416283.6;ENST00000422959.6;ENST00000307305.12;ENST00000275575.11;ENST00000248550.7;ENST00000470215.1	16.949	7.591	10.823	0.926(8874)	0.963(676)	0.962(16726)	non tumor-specific	nAS	yes
UN_RAB5B_LS0044	chr12:55992336|55992407:-	RAB5B	RAB5B, member RAS oncogene family	protein coding gene	no	.	2.756	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC068760.1_UP_LS0003	chr3:180296172|180304808:+	AC068760.1	-	pseudogene	no	.	2.693	0.485	0.000	0.013(128)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_UBXN2B_LS0012	chr8:58430669|58434395:+	UBXN2B	UBX domain protein 2B	protein coding gene	no	.	20.970	0.543	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
FCHO1_LS044	chr19:17784235|17784725:+	FCHO1	FCH and mu domain containing endocytic adaptor 1	protein coding gene	no	ENST00000594202.5;ENST00000252771.11;ENST00000600676.5;ENST00000596536.5;ENST00000595033.5;ENST00000596951.5;ENST00000597512.1	23.580	5.897	6.164	0.816(7816)	0.65(456)	0.898(15613)	non tumor-specific	alt_3prime;exon_skip	yes
ADARB1_LS026	chr21:45181516|45182585:+	ADARB1	adenosine deaminase RNA specific B1	protein coding gene	yes	ENST00000631642.1	10.301	0.000	0.716	0(3)	0(0)	0.123(2133)	non tumor-specific	intron_retention	yes
USP37_LS023	chr2:218510140|218529956:-	USP37	ubiquitin specific peptidase 37	protein coding gene	no	ENST00000258399.7;ENST00000454775.5;ENST00000415516.5;ENST00000418019.5;ENST00000478329.1	4.164	2.514	2.351	0.699(6695)	0.819(575)	0.838(14569)	non tumor-specific	exon_skip	yes
UN_DOK4_LS0030	chr16:57475575|57475850:-	DOK4	docking protein 4	protein coding gene	no	.	14.718	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
CHMP7_LS019	chr8:23258830|23260144:+	CHMP7	charged multivesicular body protein 7	protein coding gene	no	ENST00000523091.5	0.187	0.153	2.162	0.507(4853)	0.548(385)	0.87(15122)	non tumor-specific	exon_skip	yes
ITPKA_LS002	chr15:41494416|41501463:+	ITPKA	inositol-trisphosphate 3-kinase A	protein coding gene	no	ENST00000425927.5;ENST00000260386.6	2.774	5.146	1.845	0.651(6234)	0.332(233)	0.648(11260)	non tumor-specific	exon_skip	yes
FAM138E_LS001	chr15:101955245|101955485:+	FAM138E	family with sequence similarity 138 member E	lncRNA gene	no	ENST00000507796.3;ENST00000559252.1	0.161	0.045	0.730	0.013(129)	0.013(9)	0.006(109)	non tumor-specific	nAS	yes
LINC02501_LS001	chr4:31506825|31557499:+	LINC02501	long intergenic non-protein coding RNA 2501	lncRNA gene	no	ENST00000510420.1	0.061	0.000	0.707	0.003(24)	0(0)	0.002(32)	non tumor-specific	nAS	yes
UN_SLC37A1_LS0031	chr21:42544570|42547103:+	SLC37A1	solute carrier family 37 member 1	protein coding gene	no	.	0.855	0.033	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
NEU1_LS006	chr6:31860621|31861188:-	NEU1	neuraminidase 1	protein coding gene	no	ENST00000480384.1;ENST00000491768.5;ENST00000375631.4;ENST00000480384.1;ENST00000491768.5;ENST00000375631.4	148.473	85.465	38.292	0.994(9527)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SEZ6L_LS030	chr22:26377775|26380266:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	ENST00000404234.7;ENST00000529632.6;ENST00000360929.7;ENST00000629590.2;ENST00000248933.10;ENST00000343706.8;ENST00000403121.5;ENST00000402979.1	25.134	5.157	2.220	0.151(1444)	0.044(31)	0.417(7241)	non tumor-specific	nAS	yes
FAM86DP_LS014	chr3:75432870|75435015:-	FAM86DP	family with sequence similarity 86 member D, pseudogene	pseudogene	no	ENST00000477247.6	0.137	0.019	0.753	0.081(772)	0.053(37)	0.222(3857)	non tumor-specific	nAS	yes
KANSL1L_LS008	chr2:210028969|210031421:-	KANSL1L	KAT8 regulatory NSL complex subunit 1 like	protein coding gene	no	.;.	0.451	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
FHOD1_LS010	chr16:67231549|67231637:-	FHOD1	formin homology 2 domain containing 1	protein coding gene	no	ENST00000258201.8;ENST00000567752.5;ENST00000567561.1;ENST00000567509.1	41.451	21.917	42.058	0.981(9395)	0.969(680)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PDX1_UP_LS0001	chr13:27916203|27917835:+	PDX1	pancreatic and duodenal homeobox 1	protein coding gene	yes	.	1.913	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPATA6L_LS0012	chr9:4600809|4604167:-	SPATA6L	spermatogenesis associated 6 like	protein coding gene	no	.	4.032	1.541	0.000	0.082(789)	0.118(83)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NBPF12_LS002	chr1:146938982|146943291:+	NBPF12	NBPF member 12	protein coding gene	yes	ENST00000617931.4	0.130	0.166	0.677	0.395(3784)	0.453(318)	0.08(1382)	non tumor-specific	alt_5prime	yes
UN_CTSL_LS0002	chr9:87726398|87727361:+	CTSL	cathepsin L	protein coding gene	no	.	5.858	0.153	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_PVT1_LS0132	chr8:128010444|128038917:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	1.949	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPB41L1_LS0042	chr20:36109419|36112426:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	.	0.863	0.469	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SMARCA1_LS006	chrX:129465732|129465844:-	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein coding gene	no	ENST00000617310.4;ENST00000371122.8;ENST00000371123.5;ENST00000371121.4	92.149	72.299	71.871	0.951(9116)	0.996(699)	0.953(16558)	non tumor-specific	alt_3prime	yes
ABCC10_LS036	chr6:43446446|43447248:+	ABCC10	ATP binding cassette subfamily C member 10	protein coding gene	no	ENST00000372530.8;ENST00000244533.7;ENST00000463024.1;ENST00000372530.8;ENST00000244533.7;ENST00000463024.1	20.581	9.376	14.980	0.985(9433)	0.96(674)	0.978(16999)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MAP2K7_LS019	chr19:7912194|7912297:+	MAP2K7	mitogen-activated protein kinase kinase 7	protein coding gene	no	ENST00000397981.7;ENST00000468058.1;ENST00000397983.7;ENST00000397979.3	39.043	23.121	50.590	0.969(9280)	0.954(670)	0.979(17021)	non tumor-specific	alt_3prime	yes
AL160313.2_LS001	chr14:99691847|99693157:-	AL160313.2	-	lncRNA gene	no	ENST00000555875.1	0.721	0.000	0.811	0(2)	0(0)	0.003(50)	non tumor-specific	nAS	yes
VPS35L_LS041	chr16:19650459|19651976:+	VPS35L	VPS35 endosomal protein sorting factor like	protein coding gene	no	ENST00000438132.7;ENST00000251143.9;ENST00000417362.6;ENST00000543152.5;ENST00000448695.5;ENST00000544275.1	66.333	43.130	46.574	0.989(9476)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CREBZF_LS007	chr11:85661749|85662389:-	CREBZF	CREB/ATF bZIP transcription factor	protein coding gene	no	ENST00000527529.6;ENST00000525639.1	1.031	0.783	2.125	0.728(6972)	0.786(552)	0.756(13133)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRAPPC9_LS036	chr8:140426641|140435112:-	TRAPPC9	trafficking protein particle complex 9	protein coding gene	no	ENST00000648948.1;ENST00000438773.3;ENST00000389328.8;ENST00000649035.1	6.903	6.653	8.168	0.932(8933)	0.973(683)	0.971(16882)	non tumor-specific	exon_skip	yes
UN_FAM126B_LS0015	chr2:200993016|200997445:-	FAM126B	family with sequence similarity 126 member B	protein coding gene	no	.	1.053	0.095	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
DLC1_LS013	chr8:13100770|13110742:-	DLC1	dynein light chain LC8-type 1	protein coding gene	yes	ENST00000509922.5;ENST00000515225.1	0.547	0.227	0.921	0.138(1325)	0.271(190)	0.294(5109)	non tumor-specific	exon_skip	yes
UN_LEMD1_UP_LS0011	chr1:205558550|205569129:-	LEMD1	LEM domain containing 1	protein coding gene	no	.	2.244	4.959	0.000	0.065(621)	0.342(240)	0(0)	non tumor-specific	nAS	no
UN_ADCY3_LS0024	chr2:24833920|24834485:-	ADCY3	adenylate cyclase 8	protein coding gene	no	.	3.034	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_THRB_LS0024	chr3:24297371|24318358:-	THRB	thyroid hormone receptor beta	protein coding gene	yes	.	0.885	0.210	0.000	0.031(298)	0.094(66)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NID1_LS0044	chr1:236012043|236017148:-	NID1	nidogen 1	protein coding gene	no	.	4.276	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PLCB4_LS0010	chr20:9302099|9307800:+	PLCB4	phospholipase C beta 4	protein coding gene	no	.	4.587	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_INTS4P1_LS0017	chr7:65200698|65231541:+	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	1.490	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TSNARE1_LS024	chr8:142331831|142343966:-	TSNARE1	t-SNARE domain containing 1	protein coding gene	no	ENST00000524325.5;ENST00000307180.4;ENST00000520166.5	9.371	5.766	11.155	0.89(8524)	0.92(646)	0.975(16945)	non tumor-specific	alt_5prime;exon_skip	yes
PIEZO1_LS016	chr16:88717615|88719574:-	PIEZO1	piezo type mechanosensitive ion channel component 1	protein coding gene	no	ENST00000419505.5;ENST00000419505.5	0.134	0.320	3.282	0.708(6785)	0.671(471)	0.816(14184)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SH3BGRL2_LS002	chr6:79673799|79696485:+	SH3BGRL2	SH3 domain binding glutamate rich protein like 2	protein coding gene	no	ENST00000369838.5	34.365	62.859	17.369	0.925(8864)	0.99(695)	0.964(16753)	non tumor-specific	nAS	yes
CAPN13_LS031	chr2:30787357|30806181:-	CAPN13	calpain 13	protein coding gene	no	ENST00000458085.6;ENST00000485248.2	2.628	1.705	1.290	0.234(2244)	0.376(264)	0.128(2225)	non tumor-specific	exon_skip	yes
DOCK11_LS006	chrX:118546116|118561383:+	DOCK11	dedicator of cytokinesis 11	protein coding gene	no	ENST00000276204.10;ENST00000276202.8;ENST00000633080.1	9.817	4.507	4.984	0.581(5562)	0.781(548)	0.812(14107)	non tumor-specific	nAS	yes
UN_PFDN4_UP_LS0019	chr20:54174142|54178389:+	PFDN4	prefoldin subunit 4	protein coding gene	no	.	0.571	0.073	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
PIP4K2B_LS005	chr17:38776625|38777687:-	PIP4K2B	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein coding gene	no	ENST00000617781.1	0.784	0.453	1.418	0.759(7276)	0.725(509)	0.75(13028)	non tumor-specific	nAS	yes
TFAP2B_LS006	chr6:50822160|50823407:+	TFAP2B	transcription factor AP-2 beta	protein coding gene	no	ENST00000344788.7;ENST00000489228.1	1.075	1.963	1.810	0.144(1377)	0.369(259)	0.184(3206)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GTF2IP1_LS006	chr7:75192230|75192899:-	GTF2IP1	general transcription factor IIi pseudogene 1	pseudogene	no	ENST00000622829.4;ENST00000616377.4;ENST00000614592.4	16.578	13.054	0.917	0.992(9503)	0.994(698)	0.502(8722)	non tumor-specific	nAS	yes
UN_KRTAP5-4_UP_LS0003	chr11:1660097|1662082:-	KRTAP5-4	keratin associated protein 5-4	protein coding gene	no	.	3.235	2.156	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	nAS	no
IQCJ-SCHIP1_LS016	chr3:159764350|159764443:+	IQCJ-SCHIP1	IQCJ-SCHIP1 readthrough	protein coding gene	no	ENST00000639448.1	0.426	0.238	1.357	0.585(5606)	0.623(437)	0.53(9219)	non tumor-specific	intron_retention	yes
TMCO5A_LS004	chr15:37935348|37936314:+	TMCO5A	transmembrane and coiled-coil domains 5A	protein coding gene	no	ENST00000560841.5;ENST00000558625.5;ENST00000559502.5;ENST00000558158.5;ENST00000560653.5;ENST00000559813.5;ENST00000319669.4	0.860	0.376	0.727	0.006(56)	0.016(11)	0.039(677)	non tumor-specific	nAS	yes
MS4A8_LS015	chr11:60708781|60715021:+	MS4A8	membrane spanning 4-domains A8	protein coding gene	no	ENST00000300226.6	9.238	10.269	1.931	0.316(3024)	0.402(282)	0.197(3425)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ASAP1_LS030	chr8:130188183|130214556:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	ENST00000357668.2;ENST00000521075.5;ENST00000518721.5;ENST00000524367.5;ENST00000519169.5;ENST00000520342.5;ENST00000520927.5	15.764	6.942	13.001	0.878(8410)	0.907(637)	0.973(16917)	non tumor-specific	exon_skip	yes
GABRA5_LS016	chr15:26940077|26943215:+	GABRA5	gamma-aminobutyric acid type A receptor subunit alpha5	protein coding gene	no	ENST00000335625.9;ENST00000355395.9;ENST00000400081.7	5.746	14.038	7.154	0.112(1075)	0.046(32)	0.264(4586)	non tumor-specific	alt_3prime;mutex_exons	yes
DNAH10_LS021	chr12:123813640|123813754:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	6.001	0.948	0.929	0.008(74)	0.048(34)	0.055(964)	non tumor-specific	intron_retention	yes
MPRIP_LS003	chr17:17042971|17075710:+	MPRIP	myosin phosphatase Rho interacting protein	protein coding gene	no	ENST00000577514.5;ENST00000395807.2;ENST00000395811.9;ENST00000341712.8	37.381	32.667	49.897	0.991(9490)	0.994(698)	0.978(16997)	non tumor-specific	exon_skip	yes
GLI3_LS012	chr7:42076857|42148226:-	GLI3	GLI family zinc finger 3	protein coding gene	yes	ENST00000395925.7;ENST00000479210.1;ENST00000448703.5	4.986	2.890	3.879	0.533(5106)	0.708(497)	0.785(13638)	non tumor-specific	exon_skip	yes
UN_MRPL49_LS0045	chr11:65126860|65126947:-	MRPL49	mitochondrial ribosomal protein L49	protein coding gene	no	.	1.320	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CARNS1_LS004	chr11:67415763|67417407:+	CARNS1	carnosine synthase 1	protein coding gene	no	ENST00000307823.7	0.259	0.072	1.284	0.078(746)	0.054(38)	0.313(5445)	non tumor-specific	alt_3prime;exon_skip	yes
EPB41L3_LS039	chr18:5428465|5433469:-	EPB41L3	erythrocyte membrane protein band 4.1 like 3	protein coding gene	yes	ENST00000544123.5;ENST00000342933.7;ENST00000341928.6;ENST00000542652.6;ENST00000637651.1;ENST00000540638.6;ENST00000545076.5	17.791	27.375	14.225	0.776(7433)	0.917(644)	0.959(16666)	non tumor-specific	exon_skip	yes
CITED1_LS005	chrX:72302934|72305302:-	CITED1	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1	protein coding gene	no	ENST00000453707.6;ENST00000431381.5;ENST00000427412.5;ENST00000450875.5;ENST00000454225.1;ENST00000453707.6;ENST00000431381.5;ENST00000427412.5;ENST00000450875.5;ENST00000454225.1	2.682	0.251	1.486	0.335(3205)	0.409(287)	0.267(4649)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
AC010646.1_LS002	chr19:17240765|17251582:-	AC010646.1	-	protein coding gene	no	ENST00000594059.1	0.438	0.168	0.652	0.154(1472)	0.131(92)	0.015(267)	non tumor-specific	nAS	yes
UN_ATP5IF1_LS0002	chr1:28236270|28236342:+	ATP5IF1	ATP synthase inhibitory factor subunit 1	protein coding gene	no	.	43.872	1.407	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FAS_LS016	chr10:89010815|89011999:+	FAS	fatty acid synthase	protein coding gene	yes	ENST00000612663.5;ENST00000355740.6;ENST00000352159.8;ENST00000484444.5;ENST00000488877.5;ENST00000355279.2;ENST00000313771.9;ENST00000494799.5;ENST00000487314.1;ENST00000640681.1;ENST00000640140.1	12.141	11.058	10.048	0.953(9130)	0.996(699)	0.958(16645)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FAR1_LS0011	chr11:13711808|13711932:+	FAR1	fatty acyl-CoA reductase 1	protein coding gene	no	.	4.074	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ETV7_LS0022	chr6:36385669|36386871:-	ETV7	ETS variant transcription factor 7	protein coding gene	no	.	0.710	0.087	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
CIRBP_LS065	chr19:1274440|1274649:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	ENST00000590347.5;ENST00000587169.5;ENST00000586636.5;ENST00000591376.5;ENST00000592234.5;ENST00000444172.6;ENST00000590188.5;ENST00000588917.2;ENST00000621399.1	54.167	23.851	178.546	0.99(9481)	0.99(695)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC097461.1_LS0002	chr2:222569216|222569325:-	AC097461.1	-	lncRNA gene	no	.	0.883	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM65_LS014	chr17:75892500|75892755:-	TRIM65	tripartite motif containing 65	protein coding gene	no	ENST00000269383.7;ENST00000648382.1;ENST00000543309.5;ENST00000540128.1	14.234	7.491	12.582	0.963(9223)	0.983(690)	0.974(16925)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AMYP1_LS004	chr1:103716018|103717991:+	AMYP1	amylase alpha pseudogene 1	pseudogene	no	ENST00000440059.1	6.690	2.447	0.815	0.119(1136)	0.128(90)	0.095(1647)	non tumor-specific	nAS	yes
UN_KCND2_LS0016	chr7:120654224|120665482:-	KCND2	potassium voltage-gated channel subfamily D member 2	protein coding gene	no	.	23.224	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_JOSD1_LS0017	chr22:38687997|38688935:-	JOSD1	Josephin domain containing 1	protein coding gene	no	.	10.298	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AC109309.1_LS001	chr11:3226182|3226316:+	AC109309.1	-	lncRNA gene	no	ENST00000418995.2	1.446	0.000	0.852	0.001(8)	0(0)	0.002(40)	non tumor-specific	nAS	yes
UN_TMEM104_LS0027	chr17:74819843|74830062:+	TMEM104	transmembrane protein 104	protein coding gene	no	.	1.792	0.346	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SH3KBP1_LS025	chrX:19746441|19747664:-	SH3KBP1	SH3 domain containing kinase binding protein 1	protein coding gene	no	ENST00000432234.5	0.059	0.042	0.699	0.077(742)	0.098(69)	0.041(707)	non tumor-specific	nAS	yes
UN_IZUMO2_UP_LS0006	chr19:50309842|50506561:-	IZUMO2	IZUMO family member 2	protein coding gene	no	.	2.611	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SLCO5A1_LS011	chr8:69761492|69761743:-	SLCO5A1	solute carrier organic anion transporter family member 5A1	protein coding gene	no	ENST00000528658.1	0.259	0.002	0.650	0.028(270)	0.01(7)	0.03(529)	non tumor-specific	nAS	yes
LARP7_LS016	chr4:112646955|112647034:+	LARP7	La ribonucleoprotein 7, transcriptional regulator	protein coding gene	no	ENST00000344442.9;ENST00000509061.5;ENST00000509622.5;ENST00000505034.5;ENST00000324052.10	56.986	37.673	50.983	0.985(9434)	0.996(699)	0.979(17011)	non tumor-specific	alt_3prime;intron_retention	yes
BRSK2_LS013	chr11:1443635|1445294:+	BRSK2	BR serine/threonine kinase 2	protein coding gene	no	ENST00000529951.5;ENST00000531078.1	1.654	0.336	1.989	0.151(1446)	0.019(13)	0.352(6121)	non tumor-specific	exon_skip	yes
MBTPS1_LS028	chr16:84095805|84099053:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	ENST00000343411.7	72.069	62.861	49.711	0.967(9268)	0.989(694)	0.978(17008)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC024940.1_LS009	chr12:31116469|31117041:-	AC024940.1	-	pseudogene	no	ENST00000641844.2	4.612	0.400	0.747	0.08(768)	0.013(9)	0.112(1952)	non tumor-specific	nAS	yes
RARB_LS002	chr3:25428531|25461193:+	RARB	retinoic acid receptor beta	protein coding gene	yes	ENST00000437042.6	0.081	0.054	0.680	0.142(1364)	0.228(160)	0.106(1839)	non tumor-specific	alt_5prime	yes
UN_PPP4R3A_UP_LS0012	chr14:91554392|91574403:-	PPP4R3A	protein phosphatase 4 regulatory subunit 3A	protein coding gene	no	.	4.383	0.698	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UBE2Q2P2_LS0017	chr15:82382298|82400660:+	UBE2Q2P2	ubiquitin conjugating enzyme E2 Q2 pseudogene 2	pseudogene	no	.	0.984	0.093	0.000	0.018(174)	0.009(6)	0(0)	non tumor-specific	nAS	no
SP100_LS039	chr2:230503110|230504186:+	SP100	SP100 nuclear antigen	protein coding gene	yes	ENST00000264052.9;ENST00000409112.5;ENST00000340126.8	3.142	2.362	12.599	0.939(8994)	0.979(687)	0.952(16548)	non tumor-specific	exon_skip	yes
UN_PLEC_LS0612	chr8:143924438|143924553:-	PLEC	plectin	protein coding gene	no	.	12.871	1.379	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_ELOCP20_UP_LS0005	chr1:115505760|115534702:+	ELOCP20	elongin C pseudogene 20	pseudogene	no	.	4.574	0.429	0.000	0.065(625)	0.011(8)	0(0)	non tumor-specific	nAS	no
DDX60L_LS065	chr4:168530702|168537641:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000505150.5	0.794	0.022	0.582	0.002(15)	0.001(1)	0.005(90)	non tumor-specific	exon_skip	yes
MAMDC4_LS019	chr9:136855110|136855431:+	MAMDC4	MAM domain containing 4	protein coding gene	no	.;.;.	0.368	0.250	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TENM4_LS035	chr11:79065007|79069722:-	TENM4	teneurin transmembrane protein 4	protein coding gene	no	ENST00000278550.11;ENST00000532654.5	2.533	1.101	1.208	0.168(1614)	0.144(101)	0.403(7006)	non tumor-specific	nAS	yes
ACAT2_LS008	chr6:159776272|159777302:+	ACAT2	sterol O-acyltransferase 2	protein coding gene	no	ENST00000367048.4;ENST00000472052.1	123.762	87.760	41.249	0.996(9547)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DIAPH1_LS0120	chr5:141573664|141573707:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	4.047	0.505	0.000	0.007(68)	0.007(5)	0(0)	non tumor-specific	nAS	no
MYO5B_LS024	chr18:49880455|49894941:-	MYO5B	myosin VB	protein coding gene	no	ENST00000285039.11;ENST00000324581.10	19.833	20.494	4.545	0.832(7971)	0.932(654)	0.648(11266)	non tumor-specific	alt_5prime	yes
UN_P4HB_LS0202	chr17:81844080|81845204:+	P4HB	prolyl 4-hydroxylase subunit beta	protein coding gene	no	.	1.100	0.766	0.000	0.009(82)	0.006(4)	0(0)	non tumor-specific	nAS	no
CXorf57_LS017	chrX:106669330|106678128:+	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein coding gene	no	ENST00000372544.6;ENST00000372548.8;ENST00000421550.1	7.598	3.956	3.291	0.524(5018)	0.692(486)	0.889(15448)	non tumor-specific	nAS	yes
PHAX_LS004	chr5:126608484|126617250:+	PHAX	phosphorylated adaptor for RNA export	protein coding gene	no	ENST00000297540.4;ENST00000505674.5;ENST00000511371.1	61.077	38.834	26.227	0.995(9530)	0.997(700)	0.979(17011)	non tumor-specific	exon_skip	yes
UN_LINC01786_UP_LS0001	chr1:1247841|1250076:+	LINC01786	long intergenic non-protein coding RNA 1786	lncRNA gene	no	.	2.547	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
POU2F3_LS016	chr11:120315427|120317229:+	POU2F3	POU class 2 homeobox 3	protein coding gene	yes	ENST00000260264.8;ENST00000543440.6;ENST00000533620.5;ENST00000532638.1;ENST00000532663.1	3.561	2.039	2.113	0.495(4738)	0.699(491)	0.425(7383)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZFAND4_LS0021	chr10:45649102|45663542:-	ZFAND4	zinc finger AN1-type containing 4	protein coding gene	yes	.	1.397	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP003064.1_UP_LS0003	chr11:62399492|62400720:-	AP003064.1	-	lncRNA gene	no	.	2.056	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CTDSPL_LS015	chr3:37967882|37968216:+	CTDSPL	CTD small phosphatase like	protein coding gene	yes	ENST00000416688.5	0.797	0.403	0.845	0.508(4864)	0.571(401)	0.394(6851)	non tumor-specific	alt_3prime	yes
CHST10_LS003	chr2:100398142|100402564:-	CHST10	carbohydrate sulfotransferase 10	protein coding gene	yes	ENST00000264249.7;ENST00000409701.5;ENST00000409046.5;ENST00000420858.5;ENST00000448989.5;ENST00000421474.5	16.440	9.149	10.850	0.864(8274)	0.905(635)	0.956(16613)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM17_LS002	chr2:9491151|9492898:-	ADAM17	ADAM metallopeptidase domain 17	protein coding gene	no	ENST00000310823.8;ENST00000497134.6;ENST00000648548.1;ENST00000649227.1;ENST00000648857.1;ENST00000647979.1;ENST00000647610.1;ENST00000650116.1;ENST00000649798.1	42.908	19.120	19.053	0.974(9330)	0.984(691)	0.978(17002)	non tumor-specific	alt_3prime;intron_retention	yes
UN_SGIP1_LS0016	chr1:66633094|66635947:+	SGIP1	SH3GL interacting endocytic adaptor 1	protein coding gene	no	.	1.377	0.150	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
USP24_LS062	chr1:55148570|55151912:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000634589.1	1.957	0.888	1.120	0.06(577)	0.073(51)	0.553(9616)	non tumor-specific	exon_skip	yes
ERCC4_LS007	chr16:13930890|13932157:+	ERCC4	ERCC excision repair 4, endonuclease catalytic subunit	protein coding gene	no	ENST00000575156.5;ENST00000311895.7;ENST00000574194.1	3.231	2.080	3.000	0.819(7848)	0.875(614)	0.889(15456)	non tumor-specific	exon_skip	yes
KCNIP2-AS1_LS001	chr10:101819248|101827860:+	KCNIP2-AS1	KCNIP2 antisense RNA 1	lncRNA gene	no	ENST00000412353.1	0.615	0.287	0.841	0.178(1709)	0.207(145)	0.351(6106)	non tumor-specific	nAS	yes
UN_CHCHD2_LS0022	chr7:56104449|56106419:+	CHCHD2	coiled-coil-helix-coiled-coil-helix domain containing 2	protein coding gene	no	.	2.923	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA1109_LS0005	chr4:122154112|122154979:+	KIAA1109	KIAA1109	protein coding gene	no	.	4.730	0.094	0.000	0.005(49)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PRR36_LS007	chr19:7870183|7870370:-	PRR36	proline rich 36	protein coding gene	no	.;.	5.813	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
ANKMY1_LS017	chr2:240524009|240524304:-	ANKMY1	ankyrin repeat and MYND domain containing 1	protein coding gene	no	ENST00000406958.5	0.267	0.137	0.692	0.077(733)	0.067(47)	0.147(2551)	non tumor-specific	alt_3prime;intron_retention	yes
UN_OSBP2_UP_LS0004	chr22:30634688|30635690:+	OSBP2	oxysterol binding protein 2	protein coding gene	no	.	0.955	0.027	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RGPD5_LS0002	chr2:109838042|109841404:+	RGPD5	RANBP2 like and GRIP domain containing 5	protein coding gene	no	.	0.706	0.089	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HLA-B_LS0474	chr6:31355999|31356167:-	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	41.775	202.496	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC091057.2_LS001	chr15:30617244|30625051:-	AC091057.2	-	lncRNA gene	no	ENST00000501830.2	0.099	0.027	0.630	0.07(667)	0.088(62)	0.044(757)	non tumor-specific	nAS	yes
UN_SH2D4A_LS0007	chr8:19361314|19361833:+	SH2D4A	SH2 domain containing 4A	protein coding gene	no	.	2.396	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TFDP2_LS032	chr3:142054149|142093061:-	TFDP2	transcription factor Dp-2	protein coding gene	no	ENST00000467072.5	1.818	1.293	1.965	0.533(5107)	0.678(476)	0.829(14405)	non tumor-specific	exon_skip;mutex_exons	yes
CXCL2_LS003	chr4:74098922|74099021:-	CXCL2	C-X-C motif chemokine ligand 2	protein coding gene	yes	ENST00000508487.2;ENST00000510048.1	5.472	12.078	8.446	0.81(7763)	0.949(666)	0.91(15823)	non tumor-specific	alt_3prime;intron_retention	yes
NPAS4_LS002	chr11:66422271|66422451:+	NPAS4	neuronal PAS domain protein 4	protein coding gene	no	ENST00000639555.1;ENST00000311034.6;ENST00000525148.1	1.857	1.849	1.759	0.033(318)	0.08(56)	0.429(7456)	non tumor-specific	intron_retention	yes
MED12_LS023	chrX:71128120|71128296:+	MED12	mediator complex subunit 12	protein coding gene	no	ENST00000333646.10;ENST00000374102.5;ENST00000374080.7	24.037	14.451	21.715	0.859(8233)	0.944(663)	0.978(16999)	non tumor-specific	alt_5prime	yes
SUPT20H_LS054	chr13:37051583|37059362:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000490716.5	0.002	0.027	0.610	0.062(591)	0.081(57)	0.004(77)	non tumor-specific	alt_5prime	yes
HDAC6_LS028	chrX:48808326|48814440:+	HDAC6	histone deacetylase 6	protein coding gene	no	ENST00000334136.10;ENST00000426196.6;ENST00000376619.6;ENST00000477528.5;ENST00000643374.1;ENST00000644068.1;ENST00000643934.1;ENST00000647398.1	11.531	8.993	33.973	0.939(8997)	0.98(688)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_ZC3H8_LS0032	chr2:112243060|112243771:+	ZC3H8	zinc finger CCCH-type containing 8	protein coding gene	no	.	3.448	0.086	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
SERAC1_LS008	chr6:158116282|158119029:-	SERAC1	serine active site containing 1	protein coding gene	no	ENST00000606965.5;ENST00000606965.5	0.226	0.147	0.728	0.187(1792)	0.245(172)	0.189(3278)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BX890604.2_LS0138	chrX:3865142|3867634:-	BX890604.2	-	lncRNA gene	no	.	1.142	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01278_LS0042	chrX:63432491|63453715:-	LINC01278	long intergenic non-protein coding RNA 1278	lncRNA gene	no	.	1.187	1.972	0.000	0.001(12)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_FCGR2A_UP_LS0008	chr1:161493619|161495221:+	FCGR2A	Fc fragment of IgG receptor IIa	protein coding gene	no	.	2.904	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC099313.1_LS001	chr16:80736515|80738661:+	AC099313.1	-	lncRNA gene	no	ENST00000568437.1	0.523	0.000	0.662	0(2)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_SIX2_UP_LS0002	chr2:45013547|45014378:-	SIX2	SIX homeobox 2	protein coding gene	no	.	7.092	0.136	0.000	0.02(189)	0.004(3)	0(0)	non tumor-specific	nAS	no
ATG13_LS046	chr11:46668690|46668794:+	ATG13	autophagy related 13	protein coding gene	no	ENST00000532067.1	0.286	0.145	0.904	0.692(6633)	0.67(470)	0.342(5948)	non tumor-specific	alt_5prime;intron_retention	yes
UN_DGKD_LS0032	chr2:233438099|233438217:+	DGKD	diacylglycerol kinase delta	protein coding gene	no	.	0.746	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_LIPE-AS1_LS0040	chr19:42489045|42496844:+	LIPE-AS1	LIPE antisense RNA 1	lncRNA gene	no	.	1.924	0.221	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC121342.1_UP_LS0007	chrX:25567949|25577400:+	AC121342.1	-	lncRNA gene	no	.	4.830	4.001	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SH3TC1_LS0024	chr4:8217167|8218245:+	SH3TC1	SH3 domain and tetratricopeptide repeats 1	protein coding gene	no	.	7.710	0.916	0.000	0.007(63)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
AC005537.1_LS005	chr7:42959990|42961339:-	AC005537.1	-	lncRNA gene	no	ENST00000588324.1	0.465	0.000	0.655	0(2)	0(0)	0.003(47)	non tumor-specific	nAS	yes
UN_DPY19L2P1_LS0016	chr7:35107891|35124331:+	DPY19L2P1	DPY19L2 pseudogene 1	pseudogene	no	.	2.032	0.179	0.000	0.017(162)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC003087.1_UP_LS0013	chr7:24173401|24176809:-	AC003087.1	-	lncRNA gene	no	.	2.450	2.345	0.000	0.036(349)	0.1(70)	0(0)	non tumor-specific	nAS	no
LOXL2_LS021	chr8:23368434|23370643:-	LOXL2	lysyl oxidase like 2	protein coding gene	no	ENST00000519243.1	1.291	0.341	0.835	0.426(4078)	0.295(207)	0.287(4997)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ARPC5L_LS0019	chr9:124869359|124869420:+	ARPC5L	actin related protein 2/3 complex subunit 5 like	protein coding gene	no	.	5.914	0.321	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
MOB1A_LS006	chr2:74167107|74172586:-	MOB1A	MOB kinase activator 1A	protein coding gene	yes	ENST00000396049.4;ENST00000497054.5;ENST00000495286.5;ENST00000463975.1;ENST00000396049.4;ENST00000497054.5;ENST00000495286.5;ENST00000463975.1	118.058	71.253	39.746	0.992(9500)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC02028_LS003	chr3:194005654|194048913:-	LINC02028	long intergenic non-protein coding RNA 2028	lncRNA gene	no	ENST00000599441.5	0.149	0.033	0.703	0.01(93)	0.027(19)	0.006(107)	non tumor-specific	nAS	yes
UN_C12orf43_LS0007	chr12:121003767|121003825:+	C12orf43	chromosome 12 open reading frame 43	protein coding gene	no	.	0.812	0.302	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C3P1_LS0007	chr19:10039219|10039307:+	C3P1	complement component 3 precursor pseudogene	pseudogene	no	.	4.812	3.776	0.000	0.022(208)	0.034(24)	0(0)	non tumor-specific	nAS	no
AC108721.1_LS002	chr12:59402763|59403191:-	AC108721.1	-	lncRNA gene	no	ENST00000547088.1	16.796	0.000	0.624	0(3)	0(0)	0.002(39)	non tumor-specific	nAS	yes
RRM1_LS007	chr11:4102081|4107435:+	RRM1	ribonucleotide reductase catalytic subunit M1	protein coding gene	no	ENST00000533349.5	0.208	0.216	0.870	0.43(4119)	0.516(362)	0.436(7586)	non tumor-specific	exon_skip	yes
SP140_LS010	chr2:230237260|230238213:+	SP140	SP140 nuclear body protein	protein coding gene	no	ENST00000420434.7;ENST00000392045.7;ENST00000417495.7;ENST00000343805.10;ENST00000543928.5;ENST00000373645.3;ENST00000544128.5;ENST00000538494.1	5.902	1.520	1.642	0.724(6934)	0.719(505)	0.651(11313)	non tumor-specific	alt_3prime;exon_skip	yes
PCSK9_LS010	chr1:55058647|55059486:+	PCSK9	proprotein convertase subtilisin/kexin type 9	protein coding gene	no	ENST00000302118.5	11.599	4.580	2.150	0.445(4262)	0.42(295)	0.418(7263)	non tumor-specific	exon_skip	yes
LINC00861_LS005	chr8:125946182|125951186:-	LINC00861	long intergenic non-protein coding RNA 861	lncRNA gene	no	ENST00000518964.5	0.643	0.193	0.817	0.069(665)	0.083(58)	0.089(1549)	non tumor-specific	nAS	yes
UN_MUC5AC_LS0521	chr11:1200800|1200898:-	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	.	7.442	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RGL3_LS019	chr19:11400108|11400206:-	RGL3	ral guanine nucleotide dissociation stimulator like 3	protein coding gene	no	.;.	4.239	1.601	0.000	0.034(321)	0.03(21)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ATP10A_LS0055	chr15:25781223|25861782:-	ATP10A	ATPase phospholipid transporting 10A (putative)	protein coding gene	no	.	2.143	0.498	0.000	0.006(61)	0.02(14)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RF00561_UP_LS0052	chr5:74883100|74889320:-	RF00561	-	small non-coding RNA gene	no	.	2.557	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00525_LS001	chr7:47763578|47765829:+	LINC00525	long intergenic non-protein coding RNA 525	lncRNA gene	no	ENST00000412730.1	2.829	0.488	0.753	0.078(743)	0.026(18)	0.065(1133)	non tumor-specific	nAS	yes
ANKRD30B_LS014	chr18:14784364|14784463:+	ANKRD30B	ankyrin repeat domain 30B	protein coding gene	no	ENST00000358984.8;ENST00000580206.1	2.770	0.116	1.779	0.027(259)	0.028(20)	0.172(2989)	non tumor-specific	nAS	yes
UN_TNPO3_LS0022	chr7:129018157|129028629:-	TNPO3	transportin 3	protein coding gene	no	.	2.082	0.031	0.000	0.017(166)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL583808.2_UP_LS0014	chr1:72638088|72648208:+	AL583808.2	-	lncRNA gene	no	.	4.704	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PPM1N_LS009	chr19:45499824|45500650:+	PPM1N	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein coding gene	no	.;.	3.690	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HPCAL1_LS0003	chr2:10303177|10387758:+	HPCAL1	hippocalcin like 1	protein coding gene	no	.	0.846	0.250	0.000	0.015(148)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
MARCH3_LS003	chr5:126878394|126914930:-	MARCH3	membrane associated ring-CH-type finger 3	protein coding gene	no	ENST00000308660.5	14.331	10.174	8.595	0.895(8574)	0.917(644)	0.966(16793)	non tumor-specific	exon_skip	yes
UN_CNTN6_LS0036	chr3:1373762|1373930:+	CNTN6	contactin 6	protein coding gene	no	.	5.897	1.644	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_SOX9-AS1_LS0028	chr17:72089199|72090727:-	SOX9-AS1	SOX9 antisense RNA 1	lncRNA gene	no	.	0.731	0.166	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL009178.2_UP_LS0029	chr6:167547135|167547771:+	AL009178.2	-	lncRNA gene	no	.	3.097	0.526	0.000	0.017(163)	0.026(18)	0(0)	non tumor-specific	nAS	no
GABBR2_LS010	chr9:98371571|98385640:-	GABBR2	gamma-aminobutyric acid type B receptor subunit 2	protein coding gene	no	ENST00000259455.3;ENST00000637410.1;ENST00000634314.1	10.156	11.514	3.877	0.203(1948)	0.118(83)	0.306(5313)	non tumor-specific	nAS	yes
UN_AL162726.3_LS0022	chr9:82562369|82562870:-	AL162726.3	-	pseudogene	no	.	6.076	0.416	0.000	0.019(180)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_ZBTB7A_LS0093	chr19:4055247|4061235:-	ZBTB7A	zinc finger and BTB domain containing 7A	protein coding gene	yes	.	1.189	0.382	0.000	0.009(83)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_UQCRB_LS0017	chr8:96233227|96234111:-	UQCRB	ubiquinol-cytochrome c reductase binding protein	protein coding gene	no	.	2.996	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
ATRX_LS009	chrX:77558846|77574250:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000373344.10;ENST00000395603.7;ENST00000480283.5;ENST00000623706.3	25.339	20.620	15.406	0.928(8893)	0.973(683)	0.971(16876)	non tumor-specific	exon_skip	yes
PSMC5_LS038	chr17:63831425|63831506:+	PSMC5	proteasome 26S subunit, ATPase 5	protein coding gene	no	ENST00000310144.10;ENST00000579147.5;ENST00000580864.5;ENST00000585242.5;ENST00000578570.5;ENST00000375812.8;ENST00000581882.5;ENST00000584880.5;ENST00000580063.1	67.086	45.320	323.456	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PPP6R2_LS007	chr22:50389111|50393893:+	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	.;.	3.892	2.910	0.000	0.438(4193)	0.587(412)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_KIRREL3_LS0072	chr11:126648229|126652781:+	KIRREL3	kirre like nephrin family adhesion molecule 3	protein coding gene	no	.	6.912	0.290	0.000	0.015(145)	0.001(1)	0(0)	non tumor-specific	nAS	no
SSXP5_LS001	chrX:52672767|52674431:+	SSXP5	SSX family pseudogene 5	pseudogene	no	ENST00000443473.1	0.075	0.000	0.604	0.004(40)	0(0)	0(1)	non tumor-specific	nAS	yes
KIAA1211_LS009	chr4:56272492|56297840:+	KIAA1211	capping protein inhibiting regulator of actin dynamics	protein coding gene	no	ENST00000629263.2	0.534	0.000	0.718	0.001(12)	0(0)	0.001(19)	non tumor-specific	nAS	yes
MAST4_LS005	chr5:66759862|66783335:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000478569.1	0.053	0.000	0.665	0.015(144)	0.024(17)	0.026(460)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC068759.1_UP_LS0001	chr3:172816837|172828635:+	AC068759.1	-	lncRNA gene	no	.	4.180	0.041	0.000	0.014(132)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FGFRL1_LS0181	chr4:1026439|1026464:-	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	7.438	0.425	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
BLM_LS021	chr15:90794357|90798190:+	BLM	BLM RecQ like helicase	protein coding gene	yes	ENST00000355112.7;ENST00000648453.1;ENST00000560509.5;ENST00000559724.5;ENST00000560136.5;ENST00000558825.5	8.803	0.823	2.268	0.869(8322)	0.564(396)	0.727(12641)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0388	chr14:104947605|104948596:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.518	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_AC016968.1_UP_LS0013	chr3:127459418|127460489:+	AC016968.1	-	lncRNA gene	no	.	2.818	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS0180	chr11:62518942|62520230:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.219	1.235	0.000	0.03(287)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_AL671277.1_UP_LS0015	chr6:29944221|29957460:-	AL671277.1	-	pseudogene	no	.	40.394	0.449	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TSPAN4_LS0002	chr11:843669|844075:+	TSPAN4	tetraspanin 4	protein coding gene	no	.	1.978	2.809	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_HMGA1_LS0001	chr6:34236961|34237204:+	HMGA1	high mobility group AT-hook 1	protein coding gene	yes	.	0.592	1.464	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
CEP57L1_LS017	chr6:109100286|109145219:+	CEP57L1	centrosomal protein 57 like 1	protein coding gene	no	ENST00000522461.5	0.072	0.021	0.627	0.132(1264)	0.113(79)	0.059(1032)	non tumor-specific	exon_skip;mutex_exons	yes
RGS6_LS019	chr14:72476840|72478268:+	RGS6	regulator of G protein signaling 6	protein coding gene	no	ENST00000553525.5;ENST00000555571.5;ENST00000553530.5;ENST00000554474.5;ENST00000556437.5;ENST00000355512.10;ENST00000404301.6;ENST00000406236.8;ENST00000407322.8;ENST00000402788.6;ENST00000622468.4;ENST00000343854.10;ENST00000555368.5;ENST00000434263.6;ENST00000554782.1	2.809	1.814	4.101	0.204(1956)	0.419(294)	0.77(13387)	non tumor-specific	nAS	yes
LINC02362_LS002	chr4:184365947|184368413:-	LINC02362	long intergenic non-protein coding RNA 2362	lncRNA gene	no	ENST00000617323.4	0.345	0.114	1.040	0.084(801)	0.123(86)	0.081(1400)	non tumor-specific	nAS	yes
KIF6_LS025	chr6:39691862|39714692:-	KIF6	kinesin family member 6	protein coding gene	no	ENST00000465719.1	3.275	1.872	0.870	0.193(1852)	0.372(261)	0.24(4170)	non tumor-specific	nAS	yes
DIMT1_LS002	chr5:62390982|62392171:-	DIMT1	DIMT1 rRNA methyltransferase and ribosome maturation factor	protein coding gene	no	ENST00000199320.8	68.225	37.259	41.444	0.994(9525)	0.997(700)	0.979(17011)	non tumor-specific	exon_skip	yes
SH3RF3_LS007	chr2:109437146|109449170:+	SH3RF3	SH3 domain containing ring finger 3	protein coding gene	no	ENST00000309415.7	6.716	4.097	6.394	0.75(7185)	0.853(599)	0.932(16197)	non tumor-specific	nAS	yes
UN_AC004522.1_UP_LS0107	chr7:99976023|99983346:+	AC004522.1	-	pseudogene	no	.	13.102	4.136	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
SORCS2_LS016	chr4:7712853|7714240:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	ENST00000507866.6;ENST00000329016.10	10.024	7.600	3.010	0.476(4561)	0.795(558)	0.796(13836)	non tumor-specific	nAS	yes
UN_POLR2A_LS0228	chr17:7513432|7513496:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	9.764	0.260	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLK1_LS013	chr2:200857884|200857973:-	CLK1	CDC like kinase 1	protein coding gene	no	ENST00000321356.8;ENST00000621181.4;ENST00000461981.5;ENST00000432425.5;ENST00000473565.5;ENST00000409769.6;ENST00000409403.6;ENST00000434813.3	91.175	61.318	291.897	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ADAT2_LS0035	chr6:143432768|143433806:-	ADAT2	adenosine deaminase tRNA specific 2	protein coding gene	no	.	1.393	0.443	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	nAS	no
ATP9B_LS002	chr18:79069529|79077982:+	ATP9B	ATPase phospholipid transporting 9B (putative)	protein coding gene	no	ENST00000588600.1;ENST00000591464.5	0.077	0.044	0.771	0.124(1187)	0.185(130)	0.35(6079)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC009533.2_LS0001	chr12:9315798|9316024:+	AC009533.2	-	pseudogene	no	.	0.500	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WASF1_LS0011	chr6:110102043|110102134:+	WASF1	WASP family member 1	protein coding gene	no	.	1.308	0.495	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
PIGT_LS015	chr20:45416694|45418852:+	PIGT	phosphatidylinositol glycan anchor biosynthesis class T	protein coding gene	no	ENST00000279036.11;ENST00000638383.1;ENST00000638978.1;ENST00000640364.1;ENST00000638612.1;ENST00000640666.1;ENST00000372689.9;ENST00000639499.1;ENST00000640272.1;ENST00000640107.1;ENST00000639932.1;ENST00000640692.1;ENST00000638387.1;ENST00000640986.1;ENST00000638594.1;ENST00000639783.1;ENST00000640542.1;ENST00000638478.1;ENST00000639292.1	172.957	92.871	64.539	0.994(9526)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PPP3CA_LS0011	chr4:101071700|101073298:+	PPP3CA	protein phosphatase 3 catalytic subunit alpha	protein coding gene	no	.	2.111	1.739	0.000	0.005(44)	0.064(45)	0(0)	non tumor-specific	nAS	no
CYB5RL_LS015	chr1:54187739|54195419:-	CYB5RL	cytochrome b5 reductase like	protein coding gene	no	ENST00000420054.5;ENST00000421415.5	0.106	0.124	0.712	0.344(3293)	0.363(255)	0.229(3972)	non tumor-specific	exon_skip	yes
ABLIM3_LS007	chr5:149199122|149200316:+	ABLIM3	actin binding LIM protein family member 3	protein coding gene	no	ENST00000515171.5	0.172	0.182	0.710	0.031(293)	0.034(24)	0.087(1517)	non tumor-specific	exon_skip	yes
UN_MYL9_LS0012	chr20:36545043|36549517:-	MYL9	myosin light chain 9	protein coding gene	no	.	4.322	5.846	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLIN1_LS003	chr15:89667181|89667602:-	PLIN1	perilipin 1	protein coding gene	no	ENST00000300055.9;ENST00000560330.1;ENST00000430628.2	5.767	19.021	4.802	0.217(2075)	0.483(339)	0.882(15326)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_PKM_LS0212	chr15:72199680|72200491:+	PKM	pyruvate kinase M1/2	protein coding gene	no	.	7.742	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FUT3_LS0081	chr19:5846618|5848740:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	.	1.547	0.795	0.000	0.007(66)	0.026(18)	0(0)	non tumor-specific	alt_3prime	no
DDN-AS1_LS001	chr12:48998690|49009309:+	DDN-AS1	DDN and PRKAG1 antisense RNA 1	lncRNA gene	no	ENST00000547395.1	0.254	0.080	1.178	0.271(2596)	0.087(61)	0.241(4181)	non tumor-specific	nAS	yes
RPS7_LS003	chr2:3575350|3576559:+	RPS7	ribosomal protein S7	protein coding gene	no	.;.	421.839	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CBLC_LS0001	chr19:44778284|44784264:+	CBLC	Cbl proto-oncogene C	protein coding gene	no	.	4.560	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_LINC01270_UP_LS0008	chr20:50282199|50282553:+	LINC01270	long intergenic non-protein coding RNA 1270	lncRNA gene	no	.	1.708	0.593	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
MFSD8_LS001	chr4:127918387|127919239:-	MFSD8	major facilitator superfamily domain containing 8	protein coding gene	no	ENST00000503928.2	0.461	0.141	0.736	0.032(307)	0.043(30)	0.189(3278)	non tumor-specific	intron_retention	yes
CERCAM_LS031	chr9:128435905|128436849:+	CERCAM	cerebral endothelial cell adhesion molecule	protein coding gene	no	ENST00000372842.5;ENST00000372838.8;ENST00000613052.1	111.067	57.421	74.182	0.972(9315)	0.983(690)	0.976(16963)	non tumor-specific	nAS	yes
UN_TAB1_LS0003	chr22:39400346|39415006:+	TAB1	TGF-beta activated kinase 1 (MAP3K7) binding protein 1	protein coding gene	no	.	1.016	0.156	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPFIBP2_LS012	chr11:7577432|7655414:+	PPFIBP2	PPFIA binding protein 2	protein coding gene	no	ENST00000529021.1	0.274	0.118	0.629	0.019(184)	0.028(20)	0(7)	non tumor-specific	nAS	yes
ACCSL_LS004	chr11:44050622|44051335:+	ACCSL	1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like	protein coding gene	no	ENST00000378832.1;ENST00000527145.1	3.407	0.000	0.674	0.026(246)	0(0)	0.044(764)	non tumor-specific	nAS	yes
UN_FAM168B_LS0049	chr2:131071938|131079350:-	FAM168B	family with sequence similarity 168 member B	protein coding gene	no	.	2.353	1.067	0.000	0.087(832)	0.094(66)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ADAMTS10_LS005	chr19:8585308|8585456:-	ADAMTS10	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein coding gene	no	ENST00000595838.5;ENST00000270328.8;ENST00000593913.5;ENST00000597188.5	3.843	1.476	14.648	0.444(4253)	0.346(243)	0.959(16675)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CNOT1_LS0049	chr16:58546741|58547186:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	.	6.914	0.888	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
GNG2_LS023	chr14:51950765|51979274:+	GNG2	G protein subunit gamma 2	protein coding gene	no	ENST00000553560.5	0.031	0.000	0.743	0.003(25)	0(0)	0.004(64)	non tumor-specific	nAS	yes
ZDHHC17_LS024	chr12:76828490|76841982:+	ZDHHC17	zinc finger DHHC-type palmitoyltransferase 17	protein coding gene	no	ENST00000426126.6	2.902	3.195	12.574	0.851(8151)	0.952(668)	0.969(16836)	non tumor-specific	nAS	yes
UN_PTS_LS0009	chr11:112228673|112229417:+	PTS	6-pyruvoyltetrahydropterin synthase	protein coding gene	no	.	4.177	1.586	0.000	0.094(901)	0.077(54)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_EPHX2_LS0015	chr8:27540656|27541475:+	EPHX2	epoxide hydrolase 2	protein coding gene	no	.	11.946	4.033	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
PI4KB_LS014	chr1:151299073|151301844:-	PI4KB	phosphatidylinositol 4-kinase beta	protein coding gene	no	ENST00000368874.8;ENST00000368875.6;ENST00000368873.5;ENST00000529142.5;ENST00000368872.5;ENST00000469239.1	95.085	57.816	84.112	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RDH10-AS1_LS002	chr8:73300432|73315566:-	RDH10-AS1	RDH10 antisense RNA 1	lncRNA gene	no	ENST00000520894.1	0.579	0.147	0.771	0.025(241)	0.034(24)	0.033(581)	non tumor-specific	nAS	yes
KIAA0556_LS025	chr16:27751924|27754173:+	KIAA0556	katanin interacting protein	protein coding gene	no	ENST00000261588.8;ENST00000573850.1	12.175	8.014	7.639	0.915(8771)	0.92(646)	0.968(16832)	non tumor-specific	exon_skip	yes
UN_TPSD1_UP_LS0010	chr16:1228587|1242317:+	TPSD1	tryptase delta 1	protein coding gene	no	.	21.445	1.869	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
SERTAD4-AS1_LS003	chr1:210231771|210233951:-	SERTAD4-AS1	SERTAD4 antisense RNA 1	lncRNA gene	no	ENST00000480052.1	0.034	0.145	1.794	0.513(4914)	0.729(512)	0.602(10461)	non tumor-specific	nAS	yes
CD82_LS003	chr11:44565736|44585143:+	CD82	CD82 molecule	protein coding gene	yes	ENST00000527737.5	0.022	0.071	0.703	0.115(1104)	0.088(62)	0.112(1946)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LRRC59_LS0006	chr17:50379776|50380312:+	LRRC59	leucine rich repeat containing 59	protein coding gene	no	.	3.117	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TNPO1_LS034	chr5:72900081|72900974:+	TNPO1	transportin 1	protein coding gene	no	ENST00000337273.9;ENST00000523768.5;ENST00000506351.6;ENST00000605210.1	70.251	39.614	30.302	0.994(9528)	0.997(700)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LONRF2_LS0008	chr2:100309225|100321438:-	LONRF2	LON peptidase N-terminal domain and ring finger 2	protein coding gene	no	.	0.743	0.172	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_NID1_LS0029	chr1:235980653|235981649:-	NID1	nidogen 1	protein coding gene	no	.	11.994	3.456	0.000	0.031(296)	0.047(33)	0(0)	non tumor-specific	alt_5prime	no
PCOLCE_LS015	chr7:100607523|100607637:+	PCOLCE	procollagen C-endopeptidase enhancer	protein coding gene	no	ENST00000223061.5;ENST00000486440.5;ENST00000472348.1	228.133	114.375	142.524	0.995(9536)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_AC093525.2_LS0007	chr16:2513782|2514102:+	AC093525.2	-	protein coding gene	no	.	2.025	0.146	0.000	0.012(117)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC00847_LS0029	chr5:180835047|180835441:+	LINC00847	long intergenic non-protein coding RNA 847	lncRNA gene	no	.	3.968	0.791	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF254_LS019	chr19:24106643|24126254:+	ZNF254	zinc finger protein 254	protein coding gene	no	ENST00000613065.4;ENST00000611359.3;ENST00000594886.5;ENST00000357002.4;ENST00000595187.1;ENST00000613065.4;ENST00000611359.3;ENST00000594886.5;ENST00000357002.4;ENST00000595187.1	10.667	7.116	6.477	0.9(8625)	0.956(671)	0.966(16786)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TP53I13_LS0044	chr17:29572372|29572439:+	TP53I13	tumor protein p53 inducible protein 13	protein coding gene	no	.	5.246	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	intron_retention	no
ATP1A3_LS005	chr19:41969580|41970185:-	ATP1A3	ATPase Na+/K+ transporting subunit alpha 3	protein coding gene	no	ENST00000441343.5;ENST00000648268.1;ENST00000302102.9;ENST00000602133.5;ENST00000545399.6;ENST00000543770.5	93.186	129.010	3.408	0.375(3595)	0.189(133)	0.701(12188)	non tumor-specific	alt_3prime	yes
UN_PVT1_LS0215	chr8:128070361|128074073:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	1.657	0.022	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBXN2B_LS003	chr8:58413371|58416850:+	UBXN2B	UBX domain protein 2B	protein coding gene	no	ENST00000522978.1	1.112	1.027	2.156	0.754(7223)	0.863(606)	0.85(14778)	non tumor-specific	exon_skip	yes
CHDH_LS005	chr3:53819040|53820474:-	CHDH	choline dehydrogenase	protein coding gene	no	.;.	4.462	1.166	0.000	0.03(286)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SERINC5_LS0043	chr5:80203053|80205226:-	SERINC5	serine incorporator 5	protein coding gene	no	.	1.443	0.423	0.000	0.03(291)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC011247.1_LS0006	chr2:38406989|38424386:-	AC011247.1	-	lncRNA gene	no	.	3.672	1.340	0.000	0.007(69)	0.073(51)	0(0)	non tumor-specific	nAS	no
PQLC3_LS003	chr2:11160548|11160625:+	PQLC3	solute carrier family 66 member 3	protein coding gene	no	ENST00000445402.5;ENST00000441908.6;ENST00000295083.7;ENST00000445921.5;ENST00000464700.5;ENST00000476787.1;ENST00000402361.5;ENST00000428481.1;ENST00000496444.1	28.955	22.906	28.822	0.993(9512)	0.996(699)	0.978(17008)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ERCC3_LS018	chr2:127289824|127290224:-	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit	protein coding gene	no	ENST00000426778.5;ENST00000285398.6;ENST00000647169.1;ENST00000647496.1;ENST00000445889.5;ENST00000645233.1;ENST00000645736.1;ENST00000645467.1;ENST00000644317.1;ENST00000494464.5;ENST00000456257.1;ENST00000460485.1;ENST00000642308.1	26.927	17.191	26.258	0.99(9482)	0.994(698)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC067968.1_LS003	chr19:44027490|44055109:+	AC067968.1	-	protein coding gene	no	ENST00000591793.1	0.178	0.038	0.659	0.016(153)	0.036(25)	0.009(157)	non tumor-specific	nAS	yes
CEP97_LS004	chr3:101727541|101728836:+	CEP97	centrosomal protein 97	protein coding gene	no	ENST00000341893.7;ENST00000494050.5	4.086	1.985	1.633	0.664(6358)	0.724(508)	0.726(12618)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC083837.2_LS0020	chr8:78909185|78933743:+	AC083837.2	-	no	no	.	0.930	0.171	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC011476.2_LS009	chr19:55048763|55053753:-	AC011476.2	-	lncRNA gene	no	ENST00000585492.1	0.060	0.042	0.664	0.078(751)	0.066(46)	0.016(282)	non tumor-specific	nAS	yes
NBPF11_LS002	chr1:148104645|148105360:-	NBPF11	NBPF member 11	protein coding gene	no	ENST00000614785.4;ENST00000614015.4;ENST00000614506.4;ENST00000615281.4;ENST00000613531.1	7.411	3.657	7.015	0.945(9056)	0.964(677)	0.96(16692)	non tumor-specific	nAS	yes
UN_PLXNB1_LS0070	chr3:48415041|48415180:-	PLXNB1	plexin B1	protein coding gene	yes	.	7.517	2.574	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
TTTY14_LS001	chrY:18872834|18877068:-	TTTY14	testis-specific transcript, Y-linked 14	lncRNA gene	no	ENST00000324446.3;ENST00000454875.1	3.224	3.780	15.405	0.423(4051)	0.484(340)	0.661(11483)	non tumor-specific	nAS	yes
UN_KLF8_UP_LS0021	chrX:56107614|56111291:+	KLF8	Kruppel like factor 8	protein coding gene	yes	.	1.619	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GXYLT2_UP_LS0002	chr3:72848681|72887029:+	GXYLT2	glucoside xylosyltransferase 2	protein coding gene	no	.	3.953	1.075	0.000	0.012(112)	0.01(7)	0(0)	non tumor-specific	nAS	no
PPT2_LS004	chr6:32154246|32154587:+	PPT2	palmitoyl-protein thioesterase 2	protein coding gene	no	ENST00000375143.6	0.294	0.274	2.964	0.765(7326)	0.786(552)	0.891(15481)	non tumor-specific	alt_5prime	yes
MS4A7_LS010	chr11:60385222|60394946:+	MS4A7	membrane spanning 4-domains A7	protein coding gene	no	ENST00000530234.2	0.008	0.152	0.796	0.233(2232)	0.264(185)	0.14(2436)	non tumor-specific	nAS	yes
UN_GRHPR_LS0023	chr9:37434917|37436661:+	GRHPR	glyoxylate and hydroxypyruvate reductase	protein coding gene	no	.	2.048	0.118	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
AC004870.2_LS001	chr7:46969913|46972277:+	AC004870.2	-	lncRNA gene	no	ENST00000445615.5;ENST00000423781.1;ENST00000438639.1	1.084	0.297	0.889	0.262(2514)	0.299(210)	0.047(817)	non tumor-specific	nAS	yes
NSD3_LS001	chr8:38275882|38276296:-	NSD3	nuclear receptor binding SET domain protein 3	protein coding gene	no	ENST00000317025.12;ENST00000433384.6;ENST00000528828.1;ENST00000527502.5	11.246	6.504	15.092	0.93(8908)	0.934(656)	0.978(17000)	non tumor-specific	nAS	yes
TIMM50_LS021	chr19:39486495|39488061:+	TIMM50	translocase of inner mitochondrial membrane 50	protein coding gene	no	ENST00000314349.8;ENST00000544017.5;ENST00000601358.5;ENST00000607714.5;ENST00000597666.5;ENST00000601403.5;ENST00000602028.5;ENST00000602265.5;ENST00000595961.5	112.408	43.954	76.257	0.997(9553)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_SPAG1_LS0019	chr8:100213428|100220279:+	SPAG1	sperm associated antigen 1	protein coding gene	no	.	1.313	0.791	0.000	0.127(1221)	0.103(72)	0(0)	non tumor-specific	exon_skip	no
ELAC2_LS023	chr17:13003574|13005753:-	ELAC2	elaC ribonuclease Z 2	protein coding gene	no	.;.	0.958	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNU7-196P_UP_LS0007	chr5:74036012|74102740:-	RNU7-196P	RNA, U7 small nuclear 196 pseudogene	small non-coding RNA gene	no	.	1.126	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TEN1-CDK3_LS0007	chr17:75979612|75986187:+	TEN1-CDK3	TEN1-CDK3 readthrough (NMD candidate)	protein coding gene	no	.	1.574	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
XRN1_LS029	chr3:142397460|142400444:-	XRN1	5'-3' exoribonuclease 1	protein coding gene	no	ENST00000264951.8;ENST00000498077.6;ENST00000392981.6;ENST00000472697.5	8.365	4.924	6.538	0.72(6896)	0.892(626)	0.927(16109)	non tumor-specific	nAS	yes
ACSL4_LS012	chrX:109674473|109677988:-	ACSL4	acyl-CoA synthetase long chain family member 4	protein coding gene	no	ENST00000469796.6;ENST00000340800.6;ENST00000348502.10	34.278	43.905	19.713	0.915(8765)	0.964(677)	0.975(16951)	non tumor-specific	nAS	yes
IFRD2_LS003	chr3:50288504|50288583:-	IFRD2	interferon related developmental regulator 2	protein coding gene	no	ENST00000417626.6;ENST00000426499.5;ENST00000436390.5;ENST00000474556.5;ENST00000464258.5;ENST00000486322.5;ENST00000438296.1	55.139	27.028	92.825	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	intron_retention	yes
UN_ADNP-AS1_LS0007	chr20:50933827|50935788:+	ADNP-AS1	ADNP antisense RNA 1	lncRNA gene	no	.	1.719	0.268	0.000	0.038(361)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_IGHG4_UP_LS0132	chr14:105643764|105668546:-	IGHG4	immunoglobulin heavy constant gamma 4 (G4m marker)	no	no	.	386.145	3.077	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UNK_LS0035	chr17:75813878|75814823:+	UNK	unk zinc finger	protein coding gene	no	.	1.174	0.348	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC141930.1_LS0024	chr2:1610520|1617167:-	AC141930.1	-	lncRNA gene	no	.	4.125	0.401	0.000	0.043(413)	0.011(8)	0(0)	non tumor-specific	nAS	no
SART3_LS011	chr12:108536785|108537488:-	SART3	spliceosome associated factor 3, U4/U6 recycling protein	protein coding gene	yes	ENST00000228284.7;ENST00000546728.5;ENST00000546815.5;ENST00000547528.5;ENST00000548077.1	15.458	9.789	27.904	0.985(9433)	0.993(697)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC35C1_LS0047	chr11:45812103|45812127:-	SLC35C1	solute carrier family 35 member C1	protein coding gene	no	.	3.107	2.021	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01224_LS006	chr19:23403509|23403720:-	LINC01224	long intergenic non-protein coding RNA 1224	lncRNA gene	no	ENST00000593573.5	0.530	0.156	0.867	0.159(1526)	0.1(70)	0.063(1102)	non tumor-specific	nAS	yes
CASC8_LS006	chr8:127479170|127479704:-	CASC8	cancer susceptibility 8	lncRNA gene	no	ENST00000502082.5;ENST00000502056.1	0.702	0.000	0.721	0.003(25)	0(0)	0.007(122)	non tumor-specific	nAS	yes
UN_DPM2_LS0006	chr9:127935207|127935480:+	DPM2	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein coding gene	no	.	0.911	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TPRXL_LS019	chr3:14048365|14063379:+	TPRXL	tetrapeptide repeat homeobox like (pseudogene)	pseudogene	no	ENST00000528040.1	0.037	0.010	0.631	0.113(1083)	0.071(50)	0.016(280)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LDB1_UP_LS0004	chr10:102120965|102121323:-	LDB1	LIM domain binding 2	protein coding gene	no	.	1.725	0.992	0.000	0.024(226)	0.057(40)	0(0)	non tumor-specific	nAS	no
UN_IL36G_LS0006	chr2:112980148|112984535:+	IL36G	interleukin 36 gamma	protein coding gene	no	.	36.332	2.293	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SPINK9_LS004	chr5:148336453|148338478:+	SPINK9	serine peptidase inhibitor Kazal type 9	protein coding gene	no	ENST00000511717.6;ENST00000377906.1	3.759	2.101	0.912	0.021(201)	0.023(16)	0.151(2633)	non tumor-specific	nAS	yes
UN_ASAP1_LS0060	chr8:130402893|130440289:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	1.281	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SREBF2_LS0047	chr22:41894937|41897064:+	SREBF2	sterol regulatory element binding transcription factor 2	protein coding gene	no	.	12.607	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GOLGA8R_LS003	chr15:30404349|30404432:-	GOLGA8R	golgin A8 family member R	protein coding gene	no	ENST00000327271.10	1.767	0.968	0.882	0.189(1808)	0.313(220)	0.289(5015)	non tumor-specific	nAS	yes
UN_INA_UP_LS0003	chr10:103249732|103260843:+	INA	internexin neuronal intermediate filament protein alpha	protein coding gene	no	.	2.521	0.166	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
MTERF4_LS018	chr2:241094432|241095130:-	MTERF4	mitochondrial transcription termination factor 4	protein coding gene	no	ENST00000241527.10;ENST00000614476.4	0.032	0.285	0.893	0.512(4909)	0.57(400)	0.341(5930)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AGAP3_LS008	chr7:151112244|151116793:+	AGAP3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein coding gene	no	ENST00000492234.5	0.168	0.093	0.658	0.392(3754)	0.355(249)	0.017(296)	non tumor-specific	nAS	yes
UN_B3GALNT2_LS0005	chr1:235455684|235456990:-	B3GALNT2	beta-1,3-N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	0.668	0.002	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_ACOT2_LS0008	chr14:73570072|73573388:+	ACOT2	acyl-CoA thioesterase 2	protein coding gene	no	.	7.649	0.433	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_ALG1L8P_LS0004	chr11:67790156|67791160:+	ALG1L8P	ALG1 like 8, pseudogene	pseudogene	no	.	3.845	0.248	0.000	0.038(366)	0.004(3)	0(0)	non tumor-specific	nAS	no
TTC7A_LS024	chr2:47011435|47024287:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	ENST00000484061.5	0.076	0.092	0.727	0.437(4185)	0.452(317)	0.121(2109)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ACTG1_LS0079	chr17:81510273|81510303:+	ACTG1	actin gamma 1	protein coding gene	no	.	69.222	6.955	0.000	0.011(105)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ANKRD36C_LS0030	chr2:95897342|95903053:-	ANKRD36C	ankyrin repeat domain 36C	protein coding gene	no	.	8.568	1.422	0.000	0.008(81)	0.01(7)	0(0)	non tumor-specific	mutex_exons	no
PDPN_LS017	chr1:13613725|13614300:+	PDPN	podoplanin	protein coding gene	no	ENST00000294489.10;ENST00000617617.4;ENST00000376057.8;ENST00000621990.4;ENST00000510906.5;ENST00000509009.5;ENST00000376061.8;ENST00000513143.5;ENST00000487038.5;ENST00000475043.5;ENST00000488631.1	87.557	28.104	23.149	0.871(8349)	0.899(631)	0.918(15950)	non tumor-specific	nAS	yes
DENND4C_LS017	chr9:19328162|19331978:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000434457.6;ENST00000602925.5;ENST00000380437.8	11.940	11.626	11.063	0.745(7137)	0.915(642)	0.931(16174)	non tumor-specific	exon_skip	yes
UN_RPSAP68_UP_LS0582	chr21:8401459|8445534:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	410.478	3.112	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
RPL3L_LS004	chr16:1946726|1946938:-	RPL3L	ribosomal protein L3 like	protein coding gene	no	ENST00000268661.7	5.482	2.663	1.239	0.059(566)	0.054(38)	0.331(5759)	non tumor-specific	alt_3prime	yes
UN_HELLS_LS0032	chr10:94585661|94604104:+	HELLS	helicase, lymphoid specific	protein coding gene	no	.	1.380	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RALGAPA1_LS0049	chr14:35725146|35728362:-	RALGAPA1	Ral GTPase activating protein catalytic subunit alpha 1	protein coding gene	no	.	4.546	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
GOLGA4_LS015	chr3:37282272|37289235:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000617480.4;ENST00000450863.6;ENST00000419177.3	1.451	1.350	1.634	0.697(6674)	0.819(575)	0.719(12494)	non tumor-specific	exon_skip	yes
UN_C21orf58_LS0019	chr21:46318961|46320637:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.	2.217	0.105	0.000	0.021(204)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
MBTPS1_LS014	chr16:84070776|84071804:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	ENST00000568051.1	0.007	0.015	0.680	0.776(7431)	0.852(598)	0.081(1404)	non tumor-specific	alt_5prime	yes
PLSCR3_LS015	chr17:7394159|7394477:-	PLSCR3	phospholipid scramblase 3	protein coding gene	no	ENST00000324822.15;ENST00000573070.5;ENST00000575543.5	0.092	0.266	4.663	0.396(3792)	0.368(258)	0.941(16359)	non tumor-specific	intron_retention	yes
UN_VWA7_LS0015	chr6:31776675|31777109:-	VWA7	von Willebrand factor A domain containing 7	protein coding gene	no	.	0.842	0.311	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NAA25_LS0002	chr12:112029653|112029744:-	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	protein coding gene	no	.	2.162	0.213	0.000	0.016(150)	0.006(4)	0(0)	non tumor-specific	nAS	no
ST6GAL1_LS028	chr3:187043879|187051249:+	ST6GAL1	ST6 beta-galactoside alpha-2,6-sialyltransferase 1	protein coding gene	no	ENST00000442023.1	0.009	0.035	0.695	0.512(4902)	0.651(457)	0.067(1164)	non tumor-specific	alt_5prime	yes
APEH_LS022	chr3:49675966|49676609:+	APEH	acylaminoacyl-peptide hydrolase	protein coding gene	no	.;.	3.691	1.047	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
NR3C1_LS008	chr5:143310213|143314002:-	NR3C1	nuclear receptor subfamily 3 group C member 1	protein coding gene	no	ENST00000394464.6;ENST00000343796.6;ENST00000415690.6;ENST00000424646.6;ENST00000503201.1;ENST00000504336.1	22.554	21.122	11.675	0.852(8165)	0.977(686)	0.97(16858)	non tumor-specific	alt_5prime;exon_skip	yes
TSGA10_LS041	chr2:99127176|99154837:-	TSGA10	testis specific 10	protein coding gene	no	.;.	0.800	0.037	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KIF14_LS0031	chr1:200618652|200620411:-	KIF14	kinesin family member 14	protein coding gene	yes	.	0.621	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RASA3_LS0077	chr13:114073837|114077803:-	RASA3	RAS p21 protein activator 3	protein coding gene	no	.	1.559	1.136	0.000	0.009(90)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_FO393411.1_LS0004	chr6:39958517|39958609:-	FO393411.1	-	pseudogene	no	.	9.759	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01934_LS0005	chr2:181226535|181362687:+	LINC01934	long intergenic non-protein coding RNA 1934	lncRNA gene	no	.	3.010	0.230	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	nAS	no
TNFRSF1B_LS007	chr1:12192524|12192863:+	TNFRSF1B	TNF receptor superfamily member 1B	protein coding gene	yes	ENST00000376259.6;ENST00000492361.1;ENST00000489921.1	33.204	25.055	17.581	0.962(9215)	0.991(696)	0.974(16935)	non tumor-specific	nAS	yes
UN_AD000671.1_LS0025	chr19:35746870|35746912:-	AD000671.1	-	protein coding gene	no	.	6.871	3.985	0.000	0.785(7525)	0.819(575)	0(0)	non tumor-specific	nAS	no
FNIP2_LS021	chr4:158870469|158891446:+	FNIP2	folliculin interacting protein 2	protein coding gene	no	ENST00000264433.10	17.354	20.139	9.518	0.887(8501)	0.969(680)	0.958(16660)	non tumor-specific	exon_skip	yes
UN_AL022328.4_LS0003	chr22:50199570|50199716:-	AL022328.4	-	lncRNA gene	no	.	3.042	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ESCO2_LS0011	chr8:27788002|27791963:+	ESCO2	establishment of sister chromatid cohesion N-acetyltransferase 2	protein coding gene	no	.	4.322	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CTNND1_LS0144	chr11:57817384|57817425:-	CTNND1	catenin delta 1	protein coding gene	yes	.	7.698	0.618	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00174_LS0020	chr7:66429932|66450071:-	LINC00174	long intergenic non-protein coding RNA 174	lncRNA gene	no	.	0.714	0.085	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACTR5_LS005	chr20:38756039|38765402:+	ACTR5	actin related protein 5	protein coding gene	no	ENST00000243903.5	22.570	9.981	14.725	0.988(9470)	0.994(698)	0.978(16991)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RASGRF1_LS0021	chr15:78998208|78999743:-	RASGRF1	Ras protein specific guanine nucleotide releasing factor 1	protein coding gene	no	.	2.420	0.047	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_RAPGEF2_LS0003	chr4:159152760|159186642:+	RAPGEF2	Rap guanine nucleotide exchange factor 2	protein coding gene	no	.	2.921	0.033	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
STPG2-AS1_LS005	chr4:97489812|97489996:+	STPG2-AS1	STPG2 antisense RNA 1	lncRNA gene	no	ENST00000508933.1	0.585	0.012	0.789	0.001(5)	0.001(1)	0.001(13)	non tumor-specific	nAS	yes
REPS1_LS039	chr6:138945697|138947790:-	REPS1	RALBP1 associated Eps domain containing 1	protein coding gene	no	ENST00000450536.6;ENST00000626459.2;ENST00000367663.8;ENST00000529597.5;ENST00000445570.5;ENST00000483468.5;ENST00000409812.6;ENST00000258062.9;ENST00000415951.6	21.748	14.145	18.715	0.97(9292)	0.99(695)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRUNE1_UP_LS0014	chr1:150994817|150996868:+	PRUNE1	prune exopolyphosphatase 1	protein coding gene	no	.	1.662	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DERL1_LS007	chr8:123019305|123021447:-	DERL1	derlin 1	protein coding gene	no	ENST00000259512.8;ENST00000524119.1;ENST00000419562.6;ENST00000519018.5;ENST00000523036.1	181.039	93.271	53.589	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
OTUB1_LS005	chr11:63988398|63988627:+	OTUB1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein coding gene	no	ENST00000543004.5	3.231	4.746	0.768	0.526(5036)	0.42(295)	0.335(5829)	non tumor-specific	alt_3prime	yes
UN_HNRNPM_LS0023	chr19:8485658|8485758:-	HNRNPM	heterogeneous nuclear ribonucleoprotein M	protein coding gene	no	.	1.209	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA2013_LS0007	chr1:11920534|11922636:-	KIAA2013	KIAA2013	protein coding gene	no	.	16.883	0.347	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SEC24C_LS025	chr10:73766541|73766760:+	SEC24C	SEC24 homolog C, COPII coat complex component	protein coding gene	no	ENST00000465076.5;ENST00000345254.8;ENST00000339365.2;ENST00000635550.1	72.538	46.509	76.078	0.987(9458)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ZSWIM4_LS0004	chr19:13798607|13799720:+	ZSWIM4	zinc finger SWIM-type containing 4	protein coding gene	no	.	0.842	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00601_UP_LS0036	chr15:75167443|75167604:-	RF00601	-	small non-coding RNA gene	no	.	1.767	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC243960.5_UP_LS0021	chr19:41683977|41715715:-	AC243960.5	-	pseudogene	no	.	0.563	0.409	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CD151_LS0067	chr11:838159|838214:-	CD151	CD151 molecule (Raph blood group)	protein coding gene	no	.	12.969	4.719	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZKSCAN7-AS1_LS002	chr3:44661386|44685559:-	ZKSCAN7-AS1	ZKSCAN7 ZNF cluster antisense RNA 1	lncRNA gene	no	ENST00000457331.1	0.831	0.304	1.109	0.145(1389)	0.177(124)	0.494(8591)	non tumor-specific	nAS	yes
UN_AL355102.2_LS0190	chr14:96243340|96243386:-	AL355102.2	-	protein coding gene	no	.	3.320	1.749	0.000	0.027(260)	0.054(38)	0(0)	non tumor-specific	nAS	no
UN_TBC1D9_LS0011	chr4:140659705|140659807:-	TBC1D9	TBC1 domain family member 9	protein coding gene	no	.	3.162	0.836	0.000	0.005(47)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
MXI1_LS009	chr10:110244857|110245743:+	MXI1	MAX interactor 1, dimerization protein	protein coding gene	yes	ENST00000484030.5;ENST00000485566.1	0.047	0.029	1.108	0.24(2303)	0.313(220)	0.528(9179)	non tumor-specific	exon_skip	yes
AP001781.1_LS002	chr11:111769139|111770979:-	AP001781.1	-	lncRNA gene	no	ENST00000534218.1	0.569	0.213	1.401	0.01(100)	0.007(5)	0.021(368)	non tumor-specific	nAS	yes
UN_ACTB_LS0073	chr7:5527349|5527371:+	ACTB	actin beta	protein coding gene	no	.	119.777	12.440	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PARP10_LS0115	chr8:143984860|143984903:+	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	5.119	0.683	0.000	0.025(238)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_DNAJC9_LS0046	chr10:73233503|73234817:+	DNAJC9	DnaJ heat shock protein family (Hsp40) member C9	protein coding gene	no	.	1.136	0.023	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_ST13P3_UP_LS0012	chr12:105762925|105785209:+	ST13P3	ST13, Hsp70 interacting protein pseudogene 3	pseudogene	no	.	6.141	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRADD_LS0005	chr16:67154424|67154530:+	TRADD	TNFRSF1A associated via death domain	protein coding gene	no	.	5.029	1.191	0.000	0.022(212)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_STT3B_LS0022	chr3:31622322|31623674:+	STT3B	STT3 oligosaccharyltransferase complex catalytic subunit B	protein coding gene	no	.	15.205	4.155	0.000	0.009(86)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
C10orf90_LS007	chr10:126461585|126503957:-	C10orf90	chromosome 10 open reading frame 90	protein coding gene	no	ENST00000424927.5	1.343	0.618	2.072	0.137(1310)	0.127(89)	0.222(3864)	non tumor-specific	exon_skip	yes
UN_SDC1_LS0200	chr2:20203214|20203918:+	SDC1	syndecan 1	protein coding gene	no	.	3.824	0.538	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCF4_LS0002	chr22:36861203|36863147:+	NCF4	neutrophil cytosolic factor 4	protein coding gene	no	.	1.066	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_FLT3LG_LS0003	chr19:49474451|49474603:+	FLT3LG	fms related receptor tyrosine kinase 3 ligand	protein coding gene	no	.	1.328	0.458	0.000	0.012(111)	0.02(14)	0(0)	non tumor-specific	nAS	no
DRD2_LS009	chr11:113412883|113415421:-	DRD2	dopamine receptor D2	protein coding gene	no	ENST00000346454.7;ENST00000346454.7;ENST00000346454.7	0.296	0.024	1.453	0.067(644)	0.075(53)	0.189(3278)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SPARC_LS0190	chr5:151669779|151671570:+	SPARC	secreted protein acidic and cysteine rich	protein coding gene	yes	.	209.664	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CAP2_LS0013	chr6:17495727|17496441:-	CAP2	serpin family B member 8	protein coding gene	no	.	5.384	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIF20B_LS0016	chr10:89728739|89729128:+	KIF20B	kinesin family member 20B	protein coding gene	no	.	0.821	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
TBC1D7_LS037	chr6:13326963|13328296:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	ENST00000379291.5	0.176	0.079	0.861	0.69(6607)	0.598(420)	0.425(7381)	non tumor-specific	alt_3prime;alt_5prime	yes
DBP_LS001	chr19:48631052|48633444:-	DBP	hydroxysteroid 17-beta dehydrogenase 4	protein coding gene	no	ENST00000222122.9;ENST00000599385.5;ENST00000593500.1	57.092	24.173	41.042	0.978(9370)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PARP8_LS007	chr5:50668125|50738980:+	PARP8	poly(ADP-ribose) polymerase family member 8	protein coding gene	no	ENST00000513738.5	0.215	0.000	0.687	0.007(65)	0.009(6)	0.095(1645)	non tumor-specific	exon_skip	yes
PCA3_LS004	chr9:76782832|76783705:+	PCA3	prostate cancer associated 3	lncRNA gene	no	ENST00000412654.1	13.702	1.136	0.861	0.048(463)	0.037(26)	0.011(190)	non tumor-specific	nAS	yes
SPINT2_LS010	chr19:38283797|38287876:+	SPINT2	serine peptidase inhibitor, Kunitz type 2	protein coding gene	yes	ENST00000590510.5;ENST00000301244.11;ENST00000587090.5;ENST00000590210.1;ENST00000592007.1	721.366	463.979	102.704	0.994(9519)	0.997(700)	0.97(16860)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CDIPT_LS0045	chr16:29858921|29859073:+	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein coding gene	no	.	1.224	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL21P32_UP_LS0006	chr2:186083224|186086301:-	RPL21P32	ribosomal protein L21 pseudogene 32	pseudogene	no	.	2.177	0.432	0.000	0.015(142)	0.013(9)	0(0)	non tumor-specific	nAS	no
TBC1D4_LS011	chr13:75312898|75320014:-	TBC1D4	TBC1 domain family member 4	protein coding gene	no	ENST00000377636.7	1.014	0.383	2.083	0.017(167)	0.031(22)	0.188(3272)	non tumor-specific	exon_skip	yes
UN_DCTN1_LS0010	chr2:74365241|74365431:-	DCTN1	dynactin subunit 1	protein coding gene	no	.	33.558	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BICDL1_LS015	chr12:120072729|120080887:+	BICDL1	BICD family like cargo adaptor 1	protein coding gene	no	ENST00000397558.6	5.079	3.686	4.813	0.869(8324)	0.809(568)	0.679(11809)	non tumor-specific	exon_skip	yes
RAB27A_LS023	chr15:55314154|55318931:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	.;.;.	1.695	0.163	0.000	0.016(153)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
BAIAP3_LS022	chr16:1344146|1344227:+	BAIAP3	BAI1 associated protein 3	protein coding gene	no	ENST00000426824.7;ENST00000397488.6;ENST00000562208.5;ENST00000568887.5;ENST00000324385.9;ENST00000628027.2;ENST00000421665.6	13.022	11.061	4.166	0.568(5444)	0.754(529)	0.896(15573)	non tumor-specific	intron_retention	yes
PKD1P1_LS074	chr16:16336137|16337397:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	.;.	0.968	0.602	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
OPTN_LS001	chr10:13099958|13108138:+	OPTN	optineurin	protein coding gene	no	ENST00000263036.9;ENST00000378764.6	0.094	0.075	0.816	0.262(2510)	0.309(217)	0.207(3606)	non tumor-specific	alt_3prime;exon_skip	yes
DENND2A_LS003	chr7:140522100|140523307:-	DENND2A	DENN domain containing 2A	protein coding gene	no	ENST00000275884.10;ENST00000537639.5;ENST00000461883.5;ENST00000496613.5	23.298	22.468	25.938	0.874(8373)	0.966(678)	0.928(16128)	non tumor-specific	nAS	yes
CUBN_LS052	chr10:17071971|17084271:-	CUBN	cubilin	protein coding gene	no	ENST00000377833.9	6.766	28.650	1.394	0.09(863)	0.207(145)	0.595(10340)	non tumor-specific	nAS	yes
UN_HGF_LS0007	chr7:81729779|81742909:-	HGF	SOS Ras/Rac guanine nucleotide exchange factor 1	protein coding gene	no	.	29.550	0.199	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
BRINP2_LS003	chr1:177256109|177257176:+	BRINP2	BMP/retinoic acid inducible neural specific 2	protein coding gene	no	ENST00000361539.4	4.866	3.994	5.609	0.126(1206)	0.058(41)	0.275(4782)	non tumor-specific	alt_3prime;alt_5prime	yes
AC096637.2_LS005	chr1:211684001|211684654:+	AC096637.2	-	lncRNA gene	no	ENST00000421933.1	0.132	1.417	0.805	0(3)	0.004(3)	0.006(109)	non tumor-specific	nAS	yes
NOD1_LS007	chr7:30429457|30433096:-	NOD1	nucleotide binding oligomerization domain containing 1	protein coding gene	no	ENST00000222823.8;ENST00000434755.5;ENST00000467706.1	18.154	10.148	21.695	0.977(9357)	0.954(670)	0.977(16978)	non tumor-specific	exon_skip	yes
KIF14_LS013	chr1:200589369|200590125:-	KIF14	kinesin family member 14	protein coding gene	yes	ENST00000614960.4;ENST00000367350.4	5.839	1.241	1.021	0.537(5145)	0.114(80)	0.257(4462)	non tumor-specific	nAS	yes
UN_PIGU_LS0005	chr20:34575246|34588453:-	PIGU	phosphatidylinositol glycan anchor biosynthesis class U	protein coding gene	yes	.	11.628	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AL353748.1_UP_LS0001	chr9:88528280|88528644:-	AL353748.1	-	pseudogene	no	.	1.429	0.383	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM161B_LS019	chr5:88220719|88225769:-	TMEM161B	transmembrane protein 161B	protein coding gene	no	ENST00000514135.5;ENST00000510089.5;ENST00000296595.10;ENST00000506536.5;ENST00000512429.5;ENST00000507872.1;ENST00000509387.5;ENST00000513487.5	8.182	6.188	7.217	0.919(8807)	0.976(685)	0.956(16613)	non tumor-specific	exon_skip	yes
AKR1C7P_LS006	chr10:5283787|5284815:-	AKR1C7P	aldo-keto reductase family 1 member C7, pseudogene	pseudogene	no	ENST00000305623.12;ENST00000432689.2	0.993	0.064	0.711	0.065(622)	0.011(8)	0.141(2444)	non tumor-specific	nAS	yes
LINC00989_LS001	chr4:79492623|79493152:+	LINC00989	long intergenic non-protein coding RNA 989	lncRNA gene	no	ENST00000508174.5	0.461	0.170	1.553	0.047(450)	0.167(117)	0.47(8176)	non tumor-specific	nAS	yes
UN_SNHG22_UP_LS0015	chr18:49739629|49740048:+	SNHG22	small nucleolar RNA host gene 22	lncRNA gene	no	.	3.068	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
POM121C_LS020	chr7:75475188|75484198:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	ENST00000398379.2	4.733	2.858	6.032	0.93(8906)	0.964(677)	0.962(16726)	non tumor-specific	exon_skip	yes
TRIM13_LS002	chr13:49996850|49997667:+	TRIM13	tripartite motif containing 13	protein coding gene	yes	ENST00000378183.8;ENST00000474805.5	0.356	0.217	0.670	0.727(6965)	0.809(568)	0.08(1398)	non tumor-specific	nAS	yes
UN_SLC8A1_UP_LS0012	chr2:40695885|40696845:-	SLC8A1	solute carrier family 8 member A1	protein coding gene	no	.	2.810	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARFIP1_LS0037	chr4:152885666|152888133:+	ARFIP1	ADP ribosylation factor interacting protein 1	protein coding gene	no	.	1.566	0.463	0.000	0.046(439)	0.088(62)	0(0)	non tumor-specific	exon_skip	no
HSF2BP_LS005	chr21:43630454|43633272:-	HSF2BP	heat shock transcription factor 2 binding protein	protein coding gene	no	ENST00000291560.6	2.954	0.825	1.168	0.411(3940)	0.208(146)	0.561(9754)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PRELID3A_LS002	chr18:12408007|12420325:+	PRELID3A	PRELI domain containing 3A	protein coding gene	no	ENST00000440960.5;ENST00000336990.8	1.145	0.449	3.050	0.587(5624)	0.41(288)	0.847(14725)	non tumor-specific	exon_skip	yes
ITPR3_LS018	chr6:33668634|33668974:+	ITPR3	inositol 1,4,5-trisphosphate receptor type 3	protein coding gene	no	ENST00000374316.9;ENST00000605930.2	34.641	21.073	17.726	0.851(8156)	0.893(627)	0.953(16566)	non tumor-specific	alt_3prime	yes
DDX47_LS019	chr12:12826070|12827246:+	DDX47	DEAD-box helicase 47	protein coding gene	no	ENST00000352940.8;ENST00000358007.7;ENST00000545038.5;ENST00000542123.5	160.082	77.578	81.639	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
PDPK2P_LS005	chr16:2633836|2634495:-	PDPK2P	3-phosphoinositide dependent protein kinase 2, pseudogene	pseudogene	no	ENST00000382326.5;ENST00000562415.2	7.120	6.749	0.659	0.867(8311)	0.937(658)	0.05(872)	non tumor-specific	nAS	yes
UN_TECPR2_LS0058	chr14:102498877|102498930:-	TECPR2	tectonin beta-propeller repeat containing 2	protein coding gene	no	.	1.760	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SEMA4G_LS006	chr10:100969924|100972529:+	SEMA4G	semaphorin 4G	protein coding gene	no	ENST00000521006.5;ENST00000518244.1	0.508	1.121	1.327	0.302(2894)	0.429(301)	0.393(6825)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
WDPCP_LS019	chr2:63439855|63484604:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000418148.5	0.673	0.408	0.757	0.365(3500)	0.422(296)	0.301(5239)	non tumor-specific	alt_3prime;exon_skip	yes
FAM126A_LS008	chr7:22960415|22961235:-	FAM126A	family with sequence similarity 126 member A	protein coding gene	no	ENST00000432176.6;ENST00000440481.5;ENST00000409923.5;ENST00000498833.1	7.384	3.813	7.997	0.821(7865)	0.934(656)	0.948(16470)	non tumor-specific	exon_skip	yes
UN_AP1B1_LS0050	chr22:29328399|29328474:+	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	2.162	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FCRLA_LS016	chr1:161710863|161711208:+	FCRLA	Fc receptor like A	protein coding gene	no	ENST00000465403.1	1.060	0.000	0.882	0.018(170)	0.001(1)	0.028(485)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MRPS30-DT_LS0005	chr5:44747692|44777037:-	MRPS30-DT	MRPS30 divergent transcript	lncRNA gene	no	.	0.873	0.002	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SERF2_LS0020	chr15:43791384|43791976:+	SERF2	small EDRK-rich factor 2	protein coding gene	no	.	0.797	0.067	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
AP2A1_LS008	chr19:49795718|49796103:+	AP2A1	adaptor related protein complex 2 subunit alpha 1	protein coding gene	no	ENST00000600199.1	0.319	0.230	0.976	0.704(6741)	0.756(531)	0.575(9997)	non tumor-specific	nAS	yes
RSPO1_LS008	chr1:37616675|37629889:-	RSPO1	R-spondin 1	protein coding gene	no	ENST00000615459.4	0.048	0.020	0.685	0.035(331)	0.063(44)	0.063(1098)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FLJ42969_LS0012	chr8:101071481|101075169:+	FLJ42969	-	lncRNA gene	no	.	3.084	0.345	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	nAS	no
SERAC1_LS018	chr6:158143184|158144299:-	SERAC1	serine active site containing 1	protein coding gene	no	ENST00000367104.8;ENST00000647468.1;ENST00000648111.1;ENST00000646208.1;ENST00000607742.5;ENST00000645172.1;ENST00000645077.1;ENST00000607071.6;ENST00000642244.1;ENST00000646190.1;ENST00000646410.1;ENST00000644972.1;ENST00000606965.5;ENST00000646562.1;ENST00000642903.1;ENST00000367101.5	5.982	5.047	5.610	0.835(7996)	0.926(650)	0.947(16459)	non tumor-specific	nAS	yes
KRT83_LS002	chr12:52315343|52315893:-	KRT83	keratin 83	protein coding gene	no	ENST00000293670.3	3.372	51.855	1.473	0.133(1273)	0.13(91)	0.191(3326)	non tumor-specific	nAS	yes
UN_RHBDD2_LS0015	chr7:75879260|75887992:+	RHBDD2	rhomboid domain containing 2	protein coding gene	no	.	11.232	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC005020.2_LS0012	chr7:99561966|99562368:+	AC005020.2	-	protein coding gene	no	.	1.428	0.054	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRDM10_LS004	chr11:129910656|129912124:-	PRDM10	PR/SET domain 10	protein coding gene	yes	ENST00000423662.6;ENST00000528746.5	1.142	0.618	1.344	0.299(2861)	0.345(242)	0.708(12305)	non tumor-specific	alt_5prime;exon_skip	yes
UN_OR51B6_UP_LS0010	chr11:5226717|5234063:+	OR51B6	olfactory receptor family 51 subfamily B member 6	protein coding gene	no	.	30.485	3.438	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
RAPGEF1_LS028	chr9:131638791|131643239:-	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	ENST00000372189.7;ENST00000372195.5;ENST00000372190.7;ENST00000481260.1;ENST00000438647.3	44.347	30.016	32.871	0.956(9161)	0.99(695)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
TTN_LS205	chr2:178664737|178664852:-	TTN	titin	protein coding gene	no	ENST00000589042.5;ENST00000425332.2	10.288	0.200	0.988	0.004(43)	0.009(6)	0.14(2433)	non tumor-specific	nAS	yes
UN_CHL1_LS0031	chr3:401698|402779:+	CHL1	DEAD/H-box helicase 11	protein coding gene	yes	.	10.026	0.104	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC063944.1_LS007	chr3:107318721|107322620:-	AC063944.1	-	lncRNA gene	no	ENST00000597154.5	0.488	0.051	0.647	0.002(19)	0.007(5)	0(8)	non tumor-specific	nAS	yes
UN_ATP1A1_LS0169	chr1:116401610|116404435:-	ATP1A1	ATPase Na+/K+ transporting subunit alpha 1	protein coding gene	no	.	4.617	1.463	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
FMN1_LS013	chr15:32908578|32910474:-	FMN1	formin 1	protein coding gene	no	ENST00000616417.4;ENST00000334528.13;ENST00000561249.5;ENST00000559047.5;ENST00000560317.5;ENST00000558628.1	2.048	0.878	1.941	0.704(6742)	0.812(570)	0.701(12186)	non tumor-specific	nAS	yes
UN_SLC2A3_UP_LS0029	chr12:7965008|7970131:-	SLC2A3	solute carrier family 2 member 3	protein coding gene	no	.	4.716	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL645728.1_UP_LS0487	chr1:1490652|1529277:+	AL645728.1	-	lncRNA gene	no	.	12.049	2.340	0.000	0.009(89)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AC092070.2_LS0021	chr19:53210841|53210981:+	AC092070.2	-	pseudogene	no	.	1.426	0.528	0.000	0.02(187)	0.046(32)	0(0)	non tumor-specific	nAS	no
LIME1_LS006	chr20:63737902|63738008:+	LIME1	Lck interacting transmembrane adaptor 1	protein coding gene	no	ENST00000621325.1;ENST00000480139.5;ENST00000493265.2;ENST00000489212.2	6.219	2.481	15.998	0.96(9194)	0.943(662)	0.978(17003)	non tumor-specific	alt_3prime;intron_retention	yes
SUGT1P3_LS004	chr13:40912583|40914015:-	SUGT1P3	SUGT1 pseudogene 3	pseudogene	no	ENST00000604259.5	0.845	0.000	0.668	0(3)	0(0)	0.062(1077)	non tumor-specific	nAS	yes
RIC8B_LS022	chr12:106870942|106879026:+	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	.;.	1.651	0.240	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
EVA1C_LS022	chr21:32501538|32503926:+	EVA1C	eva-1 homolog C	protein coding gene	no	ENST00000457807.5	1.138	0.800	3.917	0.754(7228)	0.895(628)	0.885(15381)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PIK3CB_LS0058	chr3:138760903|138796463:-	PIK3CB	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein coding gene	no	.	0.864	0.349	0.000	0.006(57)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PML_LS003	chr15:74023365|74024857:+	PML	PML nuclear body scaffold	protein coding gene	yes	ENST00000569161.1	0.063	0.027	0.985	0.806(7721)	0.789(554)	0.458(7966)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_IQCA1_UP_LS0037	chr2:237013946|237084156:-	IQCA1	IQ motif containing with AAA domain 1	protein coding gene	no	.	1.234	0.487	0.000	0.025(235)	0.034(24)	0(0)	non tumor-specific	nAS	no
CLTC_LS017	chr17:59666644|59666797:+	CLTC	clathrin heavy chain	protein coding gene	no	ENST00000621829.4;ENST00000393043.5;ENST00000269122.7;ENST00000466513.1	136.271	104.994	40.850	0.973(9318)	0.987(693)	0.979(17010)	non tumor-specific	exon_skip	yes
TGFB2_LS004	chr1:218405332|218434082:+	TGFB2	transforming growth factor beta 2	protein coding gene	no	ENST00000366930.8;ENST00000366929.4;ENST00000488793.1	11.240	9.802	4.947	0.81(7759)	0.907(637)	0.865(15042)	non tumor-specific	nAS	yes
PPP1R42_LS011	chr8:67013096|67017619:-	PPP1R42	protein phosphatase 1 regulatory subunit 42	protein coding gene	no	ENST00000517834.5	0.139	0.056	0.865	0.11(1052)	0.189(133)	0.081(1415)	non tumor-specific	exon_skip	yes
FBXL20_LS002	chr17:39259296|39264175:-	FBXL20	F-box and leucine rich repeat protein 20	protein coding gene	no	.;.	1.079	0.066	0.000	0.008(75)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AMACR_LS009	chr5:33998827|34004574:-	AMACR	alpha-methylacyl-CoA racemase	protein coding gene	no	ENST00000335606.10;ENST00000382085.7;ENST00000426255.6;ENST00000512079.5	91.905	66.085	8.117	0.99(9486)	0.996(699)	0.964(16753)	non tumor-specific	alt_3prime;exon_skip	yes
RTCB_LS001	chr22:32388099|32392240:-	RTCB	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein coding gene	no	ENST00000216038.5	209.240	118.071	115.154	0.961(9205)	0.959(673)	0.979(17021)	non tumor-specific	nAS	yes
UN_AC007240.1_LS0001	chr2:10122897|10123387:+	AC007240.1	-	protein coding gene	no	.	7.689	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CATSPERZ_LS0003	chr11:64304199|64304543:+	CATSPERZ	catsper channel auxiliary subunit zeta	protein coding gene	no	.	2.230	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
SPACA3_LS003	chr17:32991972|32995409:+	SPACA3	sperm acrosome associated 3	protein coding gene	no	ENST00000269053.7	1.178	0.000	0.689	0.001(10)	0(0)	0.031(535)	non tumor-specific	exon_skip	yes
UN_ARL4A_LS0003	chr7:12687174|12688169:+	ARL4A	ADP ribosylation factor like GTPase 4A	protein coding gene	no	.	1.799	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
SOCS7_LS017	chr17:38377842|38395309:+	SOCS7	suppressor of cytokine signaling 7	protein coding gene	no	ENST00000613678.4;ENST00000612932.4	9.364	6.881	5.600	0.888(8512)	0.892(626)	0.951(16531)	non tumor-specific	exon_skip	yes
PHB2_LS002	chr12:6965712|6965911:-	PHB2	prohibitin 2	protein coding gene	no	ENST00000537646.5;ENST00000543465.5;ENST00000535923.5;ENST00000440277.5	606.961	265.316	362.000	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
MBOAT4_LS002	chr8:30138756|30144483:-	MBOAT4	membrane bound O-acyltransferase domain containing 4	protein coding gene	no	ENST00000320542.3	1.609	1.023	0.840	0.023(225)	0.064(45)	0.02(342)	non tumor-specific	nAS	yes
CLEC18B_LS004	chr16:74409878|74410536:-	CLEC18B	C-type lectin domain family 18 member B	protein coding gene	no	ENST00000339953.9	0.009	0.143	0.718	0.119(1143)	0.167(117)	0.006(103)	non tumor-specific	exon_skip;mutex_exons	yes
EIF3B_LS023	chr7:2379511|2380204:+	EIF3B	eukaryotic translation initiation factor 3 subunit B	protein coding gene	no	ENST00000360876.8;ENST00000475415.5	236.758	78.232	83.986	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_LINC01671_LS0012	chr21:42601906|42614853:-	LINC01671	long intergenic non-protein coding RNA 1671	lncRNA gene	no	.	1.825	0.524	0.000	0.012(112)	0.009(6)	0(0)	non tumor-specific	nAS	no
DIAPH3_LS020	chr13:59991274|59992068:-	DIAPH3	diaphanous related formin 3	protein coding gene	no	ENST00000400324.8;ENST00000377908.6;ENST00000400319.5;ENST00000400320.5;ENST00000267215.8;ENST00000465066.5;ENST00000498416.2	6.138	1.509	1.501	0.632(6053)	0.457(321)	0.375(6526)	non tumor-specific	nAS	yes
UN_AC090907.1_UP_LS0014	chr15:101065664|101090566:-	AC090907.1	-	lncRNA gene	no	.	0.528	0.090	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
IL18BP_LS005	chr11:71999019|71999800:+	IL18BP	interleukin 18 binding protein	protein coding gene	no	.;.;.	1.705	0.552	0.000	0.014(134)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MTOR_LS055	chr1:11248094|11253839:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	14.183	11.022	9.092	0.852(8166)	0.936(657)	0.955(16596)	non tumor-specific	exon_skip	yes
UN_PDXDC2P-NPIPB14P_LS0029	chr16:69990052|69990209:-	PDXDC2P-NPIPB14P	-	lncRNA gene	no	.	2.071	0.206	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF75D_LS017	chrX:135292473|135343261:-	ZNF75D	zinc finger protein 75D	protein coding gene	no	.;.;.	0.838	0.461	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FRYL_LS010	chr4:48512688|48515028:-	FRYL	FRY like transcription coactivator	protein coding gene	no	ENST00000503238.5;ENST00000358350.8;ENST00000507873.7;ENST00000641795.1;ENST00000512810.1	23.719	18.748	18.021	0.951(9116)	0.974(684)	0.977(16975)	non tumor-specific	alt_3prime	yes
UN_GLUD1_LS0045	chr10:87080967|87081065:+	GLUD1	glutamate dehydrogenase 1	protein coding gene	no	.	3.904	0.361	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
SIPA1L3_LS015	chr19:38106640|38110227:+	SIPA1L3	signal induced proliferation associated 1 like 3	protein coding gene	no	ENST00000222345.10;ENST00000595384.1;ENST00000222345.10;ENST00000595384.1	26.821	17.221	6.123	0.894(8567)	0.923(648)	0.957(16626)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ADAMTSL1_LS0019	chr9:18082761|18125145:-	ADAMTSL1	ADAMTS like 1	protein coding gene	no	.	2.153	0.173	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00908_LS004	chr18:76530464|76561863:+	LINC00908	long intergenic non-protein coding RNA 908	lncRNA gene	no	ENST00000582452.1	0.173	0.070	0.624	0.004(40)	0.007(5)	0.003(59)	non tumor-specific	nAS	yes
KIR2DS4_LS002	chr19:54835114|54837576:+	KIR2DS4	killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 4	pseudogene	no	ENST00000339924.12;ENST00000391729.1	1.540	0.482	1.144	0.023(218)	0.024(17)	0.073(1274)	non tumor-specific	nAS	yes
FLNB_LS054	chr3:58153641|58154791:+	FLNB	filamin B	protein coding gene	no	ENST00000490882.5;ENST00000295956.8;ENST00000358537.7;ENST00000429972.6;ENST00000493452.5;ENST00000481470.5	134.068	102.366	53.094	0.956(9164)	0.989(694)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_METTL25_LS0029	chr12:82475240|82476644:+	METTL25	methyltransferase like 25	protein coding gene	no	.	3.106	0.606	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	nAS	no
TUT4_LS024	chr1:52463777|52465070:-	TUT4	terminal uridylyl transferase 4	protein coding gene	no	ENST00000371541.5	0.859	0.245	1.719	0.516(4948)	0.481(338)	0.768(13355)	non tumor-specific	exon_skip;mutex_exons	yes
MYO18A_LS055	chr17:29120758|29120998:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000527372.6;ENST00000533112.5;ENST00000531253.5;ENST00000628822.2;ENST00000530254.6	17.444	12.563	22.567	0.912(8739)	0.976(685)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WDR13_LS0041	chrX:48602126|48602151:+	WDR13	WD repeat domain 13	protein coding gene	no	.	100.140	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A7_UP_LS0014	chr5:1135368|1135408:-	SLC12A7	solute carrier family 12 member 7	protein coding gene	no	.	4.163	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TTF1_LS002	chr9:132379144|132386556:-	TTF1	transcription termination factor 1	protein coding gene	yes	ENST00000612514.4;ENST00000334270.2	28.468	14.740	19.392	0.989(9475)	0.987(693)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
SPIN1_LS016	chr9:88402135|88418850:+	SPIN1	sphingolipid transporter 1 (putative)	protein coding gene	no	.;.	1.796	0.301	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CASP4_LS0021	chr11:104968724|104969250:-	CASP4	caspase 4	protein coding gene	no	.	0.942	0.354	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
HMCN2_LS089	chr9:130424913|130425009:+	HMCN2	hemicentin 2	protein coding gene	no	ENST00000624552.3	5.528	6.116	7.134	0.169(1620)	0.402(282)	0.761(13226)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RNF183_LS005	chr9:113299772|113301672:-	RNF183	ring finger protein 183	protein coding gene	no	.;.	2.118	0.382	0.000	0.047(451)	0.038(27)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SDF4_LS008	chr1:1218943|1223244:-	SDF4	stromal cell derived factor 4	protein coding gene	no	ENST00000465727.5	5.724	6.472	1.052	0.468(4480)	0.446(313)	0.604(10495)	non tumor-specific	alt_3prime;exon_skip	yes
MUC15_LS006	chr11:26565896|26567052:-	MUC15	mucin 15, cell surface associated	protein coding gene	no	ENST00000436318.6;ENST00000281268.12;ENST00000529533.5;ENST00000527569.1;ENST00000648230.1	6.286	14.310	6.525	0.369(3533)	0.715(502)	0.276(4800)	non tumor-specific	exon_skip	yes
UN_ZKSCAN7_LS0006	chr3:44557470|44577305:+	ZKSCAN7	zinc finger with KRAB and SCAN domains 7	protein coding gene	no	.	0.809	0.061	0.000	0.01(96)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SIL1_LS0021	chr5:138951884|139019322:-	SIL1	SIL1 nucleotide exchange factor	protein coding gene	no	.	1.006	0.155	0.000	0.018(172)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
TRIM36_LS003	chr5:115134147|115137000:-	TRIM36	tripartite motif containing 36	protein coding gene	no	ENST00000282369.7;ENST00000513154.5;ENST00000514154.1	5.160	4.306	1.914	0.523(5014)	0.444(312)	0.569(9887)	non tumor-specific	exon_skip	yes
UN_C12orf56_LS0001	chr12:64267288|64274901:-	C12orf56	chromosome 12 open reading frame 56	protein coding gene	no	.	1.430	0.155	0.000	0.008(78)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL645728.1_UP_LS0255	chr1:1482158|1517768:+	AL645728.1	-	lncRNA gene	no	.	21.159	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ITGB4_LS018	chr17:75736154|75736288:+	ITGB4	integrin subunit beta 4	protein coding gene	no	ENST00000579662.5;ENST00000200181.7;ENST00000450894.7;ENST00000580542.5;ENST00000449880.6;ENST00000584558.5;ENST00000584374.1	84.876	38.967	18.064	0.875(8386)	0.925(649)	0.919(15966)	non tumor-specific	alt_3prime	yes
CLEC2D_LS036	chr12:9693120|9694760:+	CLEC2D	C-type lectin domain family 2 member D	protein coding gene	no	.;.	1.850	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
SLC1A3_LS014	chr5:36671233|36674049:+	SLC1A3	solute carrier family 1 member 3	protein coding gene	no	ENST00000613445.4;ENST00000265113.8;ENST00000381918.3;ENST00000505376.1	50.425	27.314	9.338	0.725(6951)	0.655(460)	0.929(16142)	non tumor-specific	exon_skip;intron_retention	yes
MMP16_LS005	chr8:88074743|88116507:-	MMP16	matrix metallopeptidase 16	protein coding gene	no	ENST00000286614.10;ENST00000544227.5	5.009	1.158	1.269	0.297(2849)	0.209(147)	0.452(7865)	non tumor-specific	nAS	yes
TRAF3IP2-AS1_LS001	chr6:111483665|111484118:+	TRAF3IP2-AS1	TRAF3IP2 antisense RNA 1	lncRNA gene	no	ENST00000525151.5	0.066	0.001	0.709	0.05(481)	0.064(45)	0.147(2552)	non tumor-specific	nAS	yes
ZNF592_LS002	chr15:84764815|84778183:+	ZNF592	zinc finger protein 592	protein coding gene	no	ENST00000560079.6	8.696	5.457	7.173	0.893(8558)	0.954(670)	0.968(16829)	non tumor-specific	alt_5prime;exon_skip	yes
EPHA7_LS006	chr6:93257523|93258099:-	EPHA7	EPH receptor A7	protein coding gene	no	ENST00000369303.8	7.769	5.992	1.987	0.275(2636)	0.426(299)	0.458(7958)	non tumor-specific	nAS	yes
TRIM51HP_LS001	chr11:55292562|55293659:-	TRIM51HP	tripartite motif-containing 51H, pseudogene	pseudogene	no	ENST00000530412.1	1.302	0.000	1.012	0.004(35)	0(0)	0(6)	non tumor-specific	nAS	yes
RANBP10_LS014	chr16:67738035|67772034:-	RANBP10	RAN binding protein 10	protein coding gene	no	ENST00000448631.6	0.056	0.058	0.712	0.444(4255)	0.493(346)	0.273(4737)	non tumor-specific	exon_skip	yes
NCOA2_LS021	chr8:70162854|70163465:-	NCOA2	nuclear receptor coactivator 2	protein coding gene	no	ENST00000452400.6;ENST00000518287.6	13.538	10.734	6.201	0.779(7460)	0.919(645)	0.94(16337)	non tumor-specific	intron_retention	yes
UN_TRIM25_LS0042	chr17:56908877|56913392:-	TRIM25	tripartite motif containing 25	protein coding gene	no	.	1.191	0.465	0.000	0.022(208)	0.013(9)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_DCAKD_LS0034	chr17:45024724|45026768:-	DCAKD	dephospho-CoA kinase domain containing	protein coding gene	no	.	2.291	1.095	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
MKRN3_LS006	chr15:23566709|23575346:+	MKRN3	makorin ring finger protein 3	protein coding gene	no	.;.	2.660	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ZNF721_LS0099	chr4:443388|443977:+	ZNF721	zinc finger protein 721	protein coding gene	no	.	1.945	0.380	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
RPF1_LS009	chr1:84496370|84497429:+	RPF1	ribosome production factor 1 homolog	protein coding gene	no	ENST00000370654.5	65.995	34.891	62.876	0.932(8931)	0.94(660)	0.979(17020)	non tumor-specific	nAS	yes
AC244502.1_LS012	chr14:22465286|22481241:-	AC244502.1	-	lncRNA gene	no	ENST00000556777.1	0.861	0.384	0.899	0.032(310)	0.08(56)	0.095(1651)	non tumor-specific	nAS	yes
UN_RYR2_LS0074	chr1:237816199|237819036:+	RYR2	ryanodine receptor 2	protein coding gene	no	.	2.817	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAEL_LS0017	chr1:167004012|167004180:+	MAEL	maelstrom spermatogenic transposon silencer	protein coding gene	no	.	1.231	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MYO1A_LS022	chr12:57043358|57049887:-	MYO1A	myosin IA	protein coding gene	yes	ENST00000492945.5	2.701	0.899	0.918	0.005(51)	0.016(11)	0.023(402)	non tumor-specific	exon_skip	yes
IBTK_LS008	chr6:82191879|82194479:-	IBTK	inhibitor of Bruton tyrosine kinase	protein coding gene	no	ENST00000306270.11;ENST00000505222.5;ENST00000445419.6;ENST00000610980.4;ENST00000503400.5;ENST00000503631.5;ENST00000510291.5;ENST00000369751.2	48.528	39.933	25.510	0.979(9382)	0.996(699)	0.976(16971)	non tumor-specific	nAS	yes
AATK_LS014	chr17:81125014|81126427:-	AATK	apoptosis associated tyrosine kinase	protein coding gene	no	ENST00000326724.8;ENST00000374792.6;ENST00000417379.5;ENST00000650574.1;ENST00000572339.5	4.951	3.477	10.888	0.435(4165)	0.504(354)	0.906(15741)	non tumor-specific	exon_skip	yes
UN_AC010280.2_UP_LS0006	chr5:68508387|68526814:-	AC010280.2	-	lncRNA gene	no	.	1.477	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
AC091944.1_LS001	chr5:161687646|161689260:-	AC091944.1	-	lncRNA gene	no	ENST00000521984.1	0.815	0.000	0.879	0.001(13)	0(0)	0.004(62)	non tumor-specific	nAS	yes
RUVBL2_LS005	chr19:48993902|49003279:+	RUVBL2	RuvB like AAA ATPase 2	protein coding gene	no	ENST00000596837.5;ENST00000596837.5	1.463	0.934	0.717	0.553(5294)	0.47(330)	0.177(3084)	non tumor-specific	alt_5prime;exon_skip	yes
CDC42_LS009	chr1:22074219|22078429:+	CDC42	cell division cycle 42	protein coding gene	no	ENST00000344548.7	7.624	8.478	6.972	0.97(9292)	0.991(696)	0.967(16809)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UBASH3A_LS011	chr21:42418609|42426697:+	UBASH3A	ubiquitin associated and SH3 domain containing A	protein coding gene	no	ENST00000291535.11;ENST00000635325.1;ENST00000319294.10;ENST00000398367.1;ENST00000473381.1	5.072	1.561	1.227	0.324(3108)	0.349(245)	0.341(5928)	non tumor-specific	nAS	yes
UN_RNU2-8P_UP_LS0007	chr6:121626305|121627019:-	RNU2-8P	RNA, U2 small nuclear 8, pseudogene	small non-coding RNA gene	no	.	3.587	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM59_LS007	chr3:160448795|160449445:-	TRIM59	tripartite motif containing 59	protein coding gene	no	ENST00000494486.1	0.534	0.158	0.808	0.383(3670)	0.184(129)	0.114(1979)	non tumor-specific	alt_5prime	yes
DPY19L4_LS001	chr8:94720014|94726331:+	DPY19L4	dpy-19 like 4	protein coding gene	no	ENST00000522422.5;ENST00000520774.5;ENST00000414645.6	7.740	6.440	6.809	0.859(8234)	0.93(653)	0.938(16309)	non tumor-specific	exon_skip	yes
ACTR10_LS013	chr14:58215284|58219694:+	ACTR10	actin related protein 10	protein coding gene	no	ENST00000545307.6;ENST00000254286.8;ENST00000555229.5;ENST00000555337.5;ENST00000556748.5;ENST00000554402.6;ENST00000556694.5;ENST00000557711.5	107.829	76.978	89.122	0.995(9534)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
EHBP1_LS033	chr2:62979335|62987931:+	EHBP1	EH domain binding protein 1	protein coding gene	no	ENST00000263991.9;ENST00000405289.5;ENST00000444311.1;ENST00000422032.1	4.812	4.105	9.503	0.961(9210)	0.984(691)	0.925(16071)	non tumor-specific	exon_skip	yes
LHX2_LS004	chr9:124014163|124015122:+	LHX2	LIM homeobox 2	protein coding gene	no	ENST00000560961.2;ENST00000373615.8	7.676	3.359	5.038	0.29(2774)	0.084(59)	0.27(4699)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EEF1A1P5_LS0262	chr9:133020263|133020285:+	EEF1A1P5	eukaryotic translation elongation factor 1 alpha 1 pseudogene 5	pseudogene	no	.	955.817	539.134	0.000	0.07(670)	0.067(47)	0(0)	non tumor-specific	nAS	no
ECH1_LS007	chr19:38816523|38817065:-	ECH1	enoyl-CoA hydratase 1	protein coding gene	no	ENST00000221418.8;ENST00000594391.5;ENST00000601778.5;ENST00000598707.5;ENST00000594164.5	433.266	362.551	237.083	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CTSB_LS0222	chr8:11845751|11848086:+	CTSB	cathepsin B	protein coding gene	no	.	0.572	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC025459.1_UP_LS0004	chr5:32889795|32925733:-	AC025459.1	-	pseudogene	no	.	4.459	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
BOK_LS003	chr2:241559088|241562348:+	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.;.	1.034	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
VWA5A_LS025	chr11:124137268|124141598:+	VWA5A	von Willebrand factor A domain containing 5A	protein coding gene	yes	ENST00000456829.6;ENST00000392748.5	22.019	29.194	21.138	0.942(9021)	0.996(699)	0.969(16836)	non tumor-specific	nAS	yes
MUC4_LS325	chr3:195784777|195785258:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	8.982	8.053	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
SCTR_LS004	chr2:119448780|119452010:-	SCTR	secretin receptor	protein coding gene	no	ENST00000019103.7;ENST00000485440.1	17.955	15.098	1.231	0.167(1604)	0.42(295)	0.215(3741)	non tumor-specific	alt_3prime;exon_skip	yes
SND1_LS009	chr7:127701323|127702435:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	ENST00000354725.7;ENST00000483503.5;ENST00000492772.1	253.361	123.276	70.526	0.991(9493)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime	yes
TECTA_LS017	chr11:121160421|121162090:+	TECTA	tectorin alpha	protein coding gene	no	ENST00000642222.1;ENST00000645008.1;ENST00000646278.1	1.913	0.832	0.000	0.062(596)	0.056(39)	0(0)	non tumor-specific	nAS	yes
UN_TMEM132A_LS0058	chr11:60936559|60936670:-	TMEM132A	transmembrane protein 132A	protein coding gene	no	.	1.908	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
HPS3_LS014	chr3:149155215|149157350:+	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	ENST00000296051.6;ENST00000460120.5	26.008	13.313	10.480	0.967(9263)	0.986(692)	0.971(16879)	non tumor-specific	alt_3prime;exon_skip	yes
WNK1_LS003	chr12:827262|830003:+	WNK1	WNK lysine deficient protein kinase 1	protein coding gene	no	ENST00000535572.5;ENST00000530271.6;ENST00000315939.10;ENST00000340908.8;ENST00000537687.5	27.830	18.585	24.919	0.894(8570)	0.962(675)	0.976(16958)	non tumor-specific	alt_3prime	yes
ATP8B3_LS024	chr19:1802645|1805374:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	ENST00000310127.10;ENST00000531925.5;ENST00000525591.5;ENST00000526092.6;ENST00000533107.3	2.236	0.646	2.153	0.467(4479)	0.228(160)	0.767(13331)	non tumor-specific	nAS	yes
UN_AC007495.1_LS0039	chr16:56151769|56161888:-	AC007495.1	-	lncRNA gene	no	.	2.133	0.330	0.000	0.016(155)	0.014(10)	0(0)	non tumor-specific	nAS	no
NMU_LS014	chr4:55609179|55630402:-	NMU	neuromedin U	protein coding gene	no	ENST00000511469.5	0.692	0.402	3.399	0.439(4209)	0.14(98)	0.178(3095)	non tumor-specific	exon_skip	yes
LONP2_LS001	chr16:48244621|48252131:+	LONP2	lon peptidase 2, peroxisomal	protein coding gene	no	ENST00000285737.8;ENST00000535754.5;ENST00000416006.7;ENST00000566755.5	24.237	17.472	16.893	0.959(9188)	0.983(690)	0.975(16949)	non tumor-specific	alt_3prime	yes
UN_CLCN7_LS0090	chr16:1457337|1459107:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	.	8.769	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
OSBPL1A_LS020	chr18:24280948|24303637:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	ENST00000319481.7;ENST00000357041.8;ENST00000579851.5;ENST00000578091.5	5.705	2.446	2.659	0.712(6820)	0.792(556)	0.798(13875)	non tumor-specific	exon_skip	yes
GPR89B_LS016	chr1:147968428|147968895:+	GPR89B	G protein-coupled receptor 89B	protein coding gene	no	ENST00000461786.5;ENST00000488603.5	0.026	0.050	0.878	0.787(7545)	0.738(518)	0.449(7803)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_IRF2BP2_LS0035	chr1:234607681|234607825:+	IRF2BP2	interferon regulatory factor 2 binding protein 2	protein coding gene	no	.	1.985	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MAPKAPK5_LS023	chr12:111883768|111885916:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	ENST00000550735.6;ENST00000553053.5;ENST00000551404.6;ENST00000549875.1	59.864	30.773	38.708	0.994(9527)	0.993(697)	0.979(17017)	non tumor-specific	exon_skip	yes
ANKRD44_LS034	chr2:197147105|197187023:-	ANKRD44	ankyrin repeat domain 44	protein coding gene	no	ENST00000647377.1;ENST00000282272.14;ENST00000328737.6;ENST00000409153.5;ENST00000409919.5;ENST00000443014.1;ENST00000463879.1	5.819	3.142	4.772	0.762(7302)	0.883(620)	0.932(16204)	non tumor-specific	exon_skip	yes
USP9Y_LS040	chrY:12842279|12843064:+	USP9Y	ubiquitin specific peptidase 9 Y-linked	protein coding gene	no	.;.	2.297	0.269	0.000	0.012(113)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PQBP1_LS006	chrX:48898346|48898492:+	PQBP1	polyglutamine binding protein 1	protein coding gene	no	ENST00000396763.5;ENST00000443648.5	0.293	0.474	0.986	0.548(5250)	0.417(293)	0.536(9325)	non tumor-specific	alt_5prime;intron_retention	yes
UN_SEPT14P24_UP_LS0059	chr7:56368067|56369213:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	2.156	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DNM1_LS052	chr9:128250356|128250725:+	DNM1	dynamin 1	protein coding gene	no	ENST00000372923.7;ENST00000475805.5;ENST00000341179.11;ENST00000393594.7;ENST00000628346.2;ENST00000486160.3;ENST00000627061.2;ENST00000627543.2;ENST00000634267.2;ENST00000441149.6	5.761	9.930	8.510	0.747(7155)	0.768(539)	0.926(16101)	non tumor-specific	alt_5prime	yes
UN_SRRM2_LS0374	chr16:2767293|2767378:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	12.494	5.029	0.000	0.116(1108)	0.094(66)	0(0)	non tumor-specific	nAS	no
CNGB1_LS016	chr16:57917476|57919099:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5	6.594	1.018	1.458	0.07(670)	0.016(11)	0.145(2517)	non tumor-specific	alt_3prime	yes
UN_AC006305.1_LS0006	chr18:56027050|56027652:+	AC006305.1	-	lncRNA gene	no	.	0.650	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CSNK1G1_LS025	chr15:64251581|64300319:-	CSNK1G1	casein kinase 1 gamma 1	protein coding gene	no	ENST00000635529.1	1.843	0.639	0.723	0.034(324)	0.033(23)	0.243(4221)	non tumor-specific	nAS	yes
ING4_LS027	chr12:6656798|6663065:-	ING4	inhibitor of growth family member 4	protein coding gene	yes	ENST00000341550.8;ENST00000619641.4;ENST00000396807.8;ENST00000446105.6;ENST00000469749.5;ENST00000472002.5;ENST00000488381.5;ENST00000423703.6;ENST00000412586.6;ENST00000437149.6;ENST00000479301.5;ENST00000493873.1;ENST00000493267.1;ENST00000341550.8;ENST00000619641.4;ENST00000396807.8;ENST00000446105.6;ENST00000469749.5;ENST00000472002.5;ENST00000488381.5;ENST00000423703.6;ENST00000412586.6;ENST00000437149.6;ENST00000479301.5;ENST00000493873.1;ENST00000493267.1;ENST00000341550.8;ENST00000619641.4;ENST00000396807.8;ENST00000446105.6;ENST00000469749.5;ENST00000472002.5;ENST00000488381.5;ENST00000423703.6;ENST00000412586.6;ENST00000437149.6;ENST00000479301.5;ENST00000493873.1;ENST00000493267.1	11.825	10.534	54.324	0.972(9314)	0.989(694)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PHKA1_LS0004	chrX:72602273|72602936:-	PHKA1	phosphorylase kinase regulatory subunit alpha 1	protein coding gene	no	.	3.570	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ADAMTS7P4_LS013	chr15:85270854|85273992:-	ADAMTS7P4	ADAMTS7 pseudogene 4	pseudogene	no	ENST00000559518.1	0.389	0.000	0.663	0.001(12)	0(0)	0.013(220)	non tumor-specific	nAS	yes
UN_AL136140.2_UP_LS0001	chr6:44514022|44526554:+	AL136140.2	-	lncRNA gene	no	.	10.942	0.290	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	nAS	no
AC098868.1_LS003	chr4:54446426|54446666:-	AC098868.1	-	lncRNA gene	no	ENST00000512628.1	0.568	0.000	0.643	0.002(16)	0(0)	0.005(94)	non tumor-specific	nAS	yes
UN_MIR2052HG_LS0036	chr8:74752533|74758098:+	MIR2052HG	MIR2052 host gene	lncRNA gene	no	.	1.069	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GAR1_UP_LS0002	chr4:109802023|109803656:+	GAR1	GAR1 ribonucleoprotein	protein coding gene	no	.	1.652	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXNL4B_LS0044	chr16:72060167|72060773:-	TXNL4B	thioredoxin like 4B	protein coding gene	no	.	616.830	321.803	0.000	0.003(25)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_RNU12_UP_LS0003	chr22:42500711|42554938:+	RNU12	RNA, U12 small nuclear 2, pseudogene	small non-coding RNA gene	no	.	3.638	4.140	0.000	0.009(83)	0.004(3)	0(0)	non tumor-specific	nAS	no
VPS13C_LS073	chr15:61977199|61978626:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	ENST00000644861.1;ENST00000249837.7;ENST00000261517.9;ENST00000645819.1;ENST00000395896.8;ENST00000395898.3	6.686	4.389	3.718	0.525(5027)	0.768(539)	0.836(14535)	non tumor-specific	nAS	yes
UN_GIMAP3P_UP_LS0012	chr7:150762511|150764852:-	GIMAP3P	GTPase, IMAP family member 3 pseudogene	pseudogene	no	.	1.240	0.117	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
LEMD2_LS016	chr6:33784519|33788381:-	LEMD2	LEM domain nuclear envelope protein 2	protein coding gene	no	.;.	0.458	0.103	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPL3P7_LS0001	chr6:108004494|108004538:-	RPL3P7	ribosomal protein L3 pseudogene 7	pseudogene	no	.	7.176	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NR1H2_LS019	chr19:50378796|50379002:+	NR1H2	nuclear receptor subfamily 1 group H member 2	protein coding gene	no	ENST00000411902.6;ENST00000253727.9;ENST00000593926.5	85.288	59.471	178.954	0.996(9538)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_ZFX_LS0010	chrX:24149794|24161715:+	ZFX	zinc finger protein X-linked	protein coding gene	no	.	0.645	0.178	0.000	0.012(114)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SEMA3A_LS024	chr7:84371900|84489096:-	SEMA3A	semaphorin 3A	protein coding gene	no	ENST00000448879.5	0.764	0.114	0.838	0.017(159)	0.077(54)	0.128(2220)	non tumor-specific	exon_skip	yes
ARNTL_LS009	chr11:13326467|13354301:+	ARNTL	aryl hydrocarbon receptor nuclear translocator like	protein coding gene	yes	ENST00000530357.5	0.101	0.053	0.681	0.156(1496)	0.182(128)	0.206(3573)	non tumor-specific	exon_skip	yes
NFS1_LS003	chr20:35673684|35673986:-	NFS1	NFS1 cysteine desulfurase	protein coding gene	no	ENST00000498084.5	0.016	0.030	0.642	0.042(406)	0.075(53)	0.041(708)	non tumor-specific	nAS	yes
DNAJC2_LS008	chr7:103319678|103321932:-	DNAJC2	DnaJ heat shock protein family (Hsp40) member C2	protein coding gene	no	.;.	5.573	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
MYADM_LS006	chr19:53867943|53869754:+	MYADM	myeloid associated differentiation marker	protein coding gene	no	ENST00000391770.8;ENST00000391770.8;ENST00000391770.8	49.703	65.512	51.865	0.894(8561)	0.939(659)	0.974(16928)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL512343.2_LS001	chr1:226061081|226061757:-	AL512343.2	-	lncRNA gene	no	ENST00000609423.1	0.298	0.146	0.911	0.497(4765)	0.519(364)	0.466(8097)	non tumor-specific	nAS	yes
UN_SHPK_LS0014	chr17:3615628|3615684:+	SHPK	sedoheptulokinase	protein coding gene	no	.	7.179	0.222	0.000	0.011(110)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01270_LS0035	chr20:50309702|50311555:+	LINC01270	long intergenic non-protein coding RNA 1270	lncRNA gene	no	.	0.880	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGEF10L_LS032	chr1:17638003|17638562:+	ARHGEF10L	Rho guanine nucleotide exchange factor 10 like	protein coding gene	no	ENST00000361221.7;ENST00000375415.5;ENST00000469726.5;ENST00000375408.7;ENST00000167825.5	38.623	35.743	54.313	0.979(9377)	0.994(698)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRPH_LS0005	chr12:49293896|49295260:-	PRPH	peripherin	protein coding gene	no	.	2.837	0.596	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
IGHV1-45_LS001	chr14:106507302|106507388:-	IGHV1-45	immunoglobulin heavy variable 1-45	no	no	ENST00000390621.3	3.581	2.772	1.570	0.198(1894)	0.303(213)	0.12(2093)	non tumor-specific	nAS	yes
UN_LNCTAM34A_LS0027	chr1:9187789|9191040:+	LNCTAM34A	long non coding transcriptional activator of miR34a	lncRNA gene	no	.	1.717	0.096	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	nAS	no
SEM1_LS018	chr7:96645936|96647429:-	SEM1	SEM1 26S proteasome complex subunit	protein coding gene	no	ENST00000606019.5;ENST00000618028.4	0.904	0.000	0.660	0(1)	0(0)	0.011(195)	non tumor-specific	nAS	yes
UN_PIK3R6_LS0023	chr17:8838351|8838564:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	.	1.582	0.084	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_HEATR3_LS0001	chr16:50066269|50066373:+	HEATR3	HEAT repeat containing 3	protein coding gene	no	.	1.194	0.144	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_NPC1L1_LS0018	chr7:44533478|44533739:-	NPC1L1	NPC1 like intracellular cholesterol transporter 1	protein coding gene	no	.	2.600	0.276	0.000	0.009(82)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC02109_LS0005	chr5:29173556|29191973:-	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	.	2.700	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
PTCSC3_LS002	chr14:36153894|36162624:-	PTCSC3	papillary thyroid carcinoma susceptibility candidate 3	lncRNA gene	yes	ENST00000556013.2	4.165	7.834	5.828	0.101(969)	0.369(259)	0.075(1304)	non tumor-specific	nAS	yes
RC3H1-IT1_LS001	chr1:174009361|174015854:-	RC3H1-IT1	RC3H1 intronic transcript 1	lncRNA gene	no	ENST00000421851.1	5.457	0.024	0.622	0.016(152)	0.006(4)	0(1)	non tumor-specific	nAS	yes
UN_OS9_LS0068	chr12:57719091|57720889:-	OS9	OS9 endoplasmic reticulum lectin	protein coding gene	no	.	4.052	0.268	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IGHG1_LS0018	chr14:105741584|105741606:+	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	203.625	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRGAP2_LS0026	chr1:206428805|206430162:+	SRGAP2	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	no	.	0.392	0.251	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
SORBS1_LS074	chr10:95434717|95437490:-	SORBS1	sorbin and SH3 domain containing 1	protein coding gene	no	ENST00000371227.8;ENST00000306402.10;ENST00000371246.6;ENST00000371247.6;ENST00000361941.7;ENST00000277982.9;ENST00000371245.7;ENST00000354106.7	1.710	0.644	7.472	0.303(2904)	0.677(475)	0.782(13590)	non tumor-specific	exon_skip	yes
C12orf76_LS016	chr12:110048870|110049057:-	C12orf76	chromosome 12 open reading frame 76	protein coding gene	no	ENST00000549724.1	0.256	0.113	0.792	0.035(338)	0.013(9)	0.024(416)	non tumor-specific	exon_skip;intron_retention	yes
UN_DDI2_LS0016	chr1:15658689|15667143:+	DDI2	DNA damage inducible 1 homolog 2	protein coding gene	no	.	4.184	0.180	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC2A2_LS008	chr3:171006105|171007148:-	SLC2A2	solute carrier family 2 member 2	protein coding gene	no	ENST00000314251.7;ENST00000497642.5;ENST00000469787.1;ENST00000461867.1	35.870	74.549	2.175	0.129(1237)	0.239(168)	0.056(965)	non tumor-specific	alt_3prime;exon_skip	yes
DENND3_LS044	chr8:141192449|141192526:+	DENND3	DENN domain containing 3	protein coding gene	no	ENST00000262585.6;ENST00000519811.5;ENST00000518668.5;ENST00000424248.2;ENST00000517813.1;ENST00000523308.5;ENST00000523530.1;ENST00000520725.5	26.089	17.949	42.124	0.99(9486)	0.991(696)	0.979(17016)	non tumor-specific	intron_retention	yes
UN_AL360085.1_UP_LS0052	chr6:112663786|112671348:+	AL360085.1	-	pseudogene	no	.	2.968	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCDC137_LS0008	chr17:81670749|81671744:+	CCDC137	coiled-coil domain containing 137	protein coding gene	no	.	3.544	0.286	0.000	0.007(65)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
PLPPR5_LS001	chr1:98893104|98914786:-	PLPPR5	phospholipid phosphatase related 5	protein coding gene	no	ENST00000263177.4	3.249	1.300	3.750	0.157(1500)	0.031(22)	0.193(3350)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CGNL1_LS0013	chr15:57376567|57406973:+	CGNL1	cingulin like 1	protein coding gene	no	.	1.696	0.769	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MBP_LS053	chr18:77066385|77105211:-	MBP	proteoglycan 2, pro eosinophil major basic protein	protein coding gene	no	ENST00000355994.6;ENST00000580402.5;ENST00000579129.5;ENST00000397863.5;ENST00000397860.7;ENST00000581878.5;ENST00000490754.5;ENST00000583798.1;ENST00000355994.6;ENST00000580402.5;ENST00000579129.5;ENST00000397863.5;ENST00000397860.7;ENST00000581878.5;ENST00000490754.5;ENST00000583798.1	13.476	11.595	10.770	0.913(8752)	0.979(687)	0.95(16507)	non tumor-specific	alt_3prime;exon_skip	yes
GIGYF2_LS018	chr2:232719128|232735155:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	ENST00000488734.5	0.032	0.000	0.640	0.037(352)	0.036(25)	0.061(1061)	non tumor-specific	exon_skip;mutex_exons	yes
ZMYND11_LS002	chr10:134892|179994:+	ZMYND11	zinc finger MYND-type containing 11	protein coding gene	yes	ENST00000397959.7;ENST00000309776.8;ENST00000509513.6	0.247	0.209	1.295	0.672(6436)	0.818(574)	0.611(10615)	non tumor-specific	alt_5prime;exon_skip	yes
EEA1_LS027	chr12:92857485|92864860:-	EEA1	early endosome antigen 1	protein coding gene	no	ENST00000322349.12;ENST00000547833.5	8.068	6.276	4.003	0.73(6990)	0.89(625)	0.863(15007)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RN7SL714P_UP_LS0028	chr14:98797877|98798095:-	RN7SL714P	RNA, 7SL, cytoplasmic 714, pseudogene	small non-coding RNA gene	no	.	7.634	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IMMP2L_LS0010	chr7:110835493|110835607:-	IMMP2L	inner mitochondrial membrane peptidase subunit 2	protein coding gene	no	.	1.313	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_C6orf48_UP_LS0602	chr6:31817559|31829639:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	82.162	17.608	0.000	0.021(205)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_PLEKHG4_LS0011	chr16:67281640|67281724:+	PLEKHG4	pleckstrin homology and RhoGEF domain containing G4	protein coding gene	no	.	2.693	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime	no
TTC39A_LS015	chr1:51301733|51302506:-	TTC39A	tetratricopeptide repeat domain 39A	protein coding gene	no	.;.	1.613	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL358913.1_UP_LS0028	chr14:43990782|43995627:-	AL358913.1	-	pseudogene	no	.	4.992	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SLC22A14_LS004	chr3:38307357|38307566:+	SLC22A14	solute carrier family 22 member 14	protein coding gene	no	ENST00000466887.5;ENST00000448498.5;ENST00000273173.4	1.370	0.000	0.830	0.006(56)	0(0)	0.236(4105)	non tumor-specific	nAS	yes
UN_UGCG_LS0016	chr9:111933035|111934439:+	UGCG	UDP-glucose ceramide glucosyltransferase	protein coding gene	no	.	9.903	0.533	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
DCST1_LS011	chr1:155042856|155043352:+	DCST1	DC-STAMP domain containing 1	protein coding gene	no	ENST00000525273.5;ENST00000295542.5;ENST00000423025.6;ENST00000368419.2	1.803	0.000	0.979	0.001(11)	0(0)	0.179(3116)	non tumor-specific	nAS	yes
SEPT4_LS054	chr17:58539208|58540666:-	SEPT4	septin 4	protein coding gene	yes	ENST00000457347.6	0.000	0.000	0.651	0(0)	0(0)	0.003(48)	non tumor-specific	exon_skip	yes
CAD_LS006	chr2:27223037|27223563:+	CAD	DNA fragmentation factor subunit beta	protein coding gene	no	ENST00000264705.8;ENST00000403525.5	15.567	4.794	7.149	0.88(8436)	0.895(628)	0.95(16513)	non tumor-specific	exon_skip	yes
DNAH2_LS045	chr17:7780782|7781042:+	DNAH2	dynein axonemal heavy chain 2	protein coding gene	no	ENST00000572933.5;ENST00000389173.6;ENST00000574518.1	3.724	1.227	1.013	0.05(483)	0.04(28)	0.169(2931)	non tumor-specific	nAS	yes
UN_DIRAS1_LS0002	chr19:2715925|2715980:+	DIRAS1	DIRAS family GTPase 1	protein coding gene	yes	.	5.030	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
BRD4_LS029	chr19:15273133|15280264:-	BRD4	bromodomain containing 4	protein coding gene	yes	ENST00000263377.6;ENST00000371835.8	0.088	0.028	0.639	0.137(1315)	0.121(85)	0.027(475)	non tumor-specific	nAS	yes
UN_PKD2_LS0020	chr4:88046870|88051822:+	PKD2	protein kinase D2	protein coding gene	no	.	2.957	0.780	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_PPARG_LS0034	chr3:12424721|12433898:+	PPARG	peroxisome proliferator activated receptor gamma	protein coding gene	yes	.	2.173	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SLC1A5_LS001	chr19:46775747|46776975:-	SLC1A5	solute carrier family 1 member 5	protein coding gene	no	ENST00000542575.6;ENST00000434726.6;ENST00000594991.5;ENST00000412532.6	295.296	144.993	82.372	0.989(9477)	0.99(695)	0.967(16814)	non tumor-specific	alt_5prime	yes
UN_ABL2_LS0007	chr1:179110455|179110575:-	ABL2	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein coding gene	yes	.	1.312	0.431	0.000	0.042(404)	0.038(27)	0(0)	non tumor-specific	exon_skip	no
PMS1_LS001	chr2:189784564|189785346:+	PMS1	PMS1 homolog 1, mismatch repair system component	protein coding gene	no	ENST00000450931.5	0.025	0.050	0.643	0.08(771)	0.043(30)	0.079(1381)	non tumor-specific	alt_5prime;exon_skip	yes
GALNT8_LS006	chr12:4746258|4760958:+	GALNT8	polypeptide N-acetylgalactosaminyltransferase 8	protein coding gene	no	ENST00000252318.6	7.676	3.240	0.968	0.074(711)	0.083(58)	0.333(5784)	non tumor-specific	exon_skip	yes
UN_CCNK_LS0135	chr14:99515335|99522133:-	CCNK	cyclin K	protein coding gene	no	.	1.978	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
MGC32805_LS005	chr5:122450666|122451781:-	MGC32805	-	lncRNA gene	no	ENST00000510972.5	0.142	0.074	0.621	0.005(44)	0.011(8)	0.005(79)	non tumor-specific	nAS	yes
AL355974.2_LS003	chr13:110036971|110057126:-	AL355974.2	-	lncRNA gene	no	ENST00000617298.1	0.923	0.254	1.014	0.127(1215)	0.111(78)	0.176(3053)	non tumor-specific	nAS	yes
UN_RPL10A_LS0016	chr6:35469495|35470204:-	RPL10A	ribosomal protein L10a	protein coding gene	no	.	24.738	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL161636.1_UP_LS0092	chr1:153040171|153070571:+	AL161636.1	-	lncRNA gene	no	.	16.160	1.807	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC116667.1_UP_LS0008	chr16:72781819|72820773:+	AC116667.1	-	lncRNA gene	no	.	1.514	0.114	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RAB5B_LS0029	chr12:55991458|55992097:+	RAB5B	RAB5B, member RAS oncogene family	protein coding gene	no	.	49.415	25.628	0.000	0.005(49)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_AC098613.1_LS0022	chr3:46392950|46406897:-	AC098613.1	-	lncRNA gene	no	.	4.357	0.152	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM147_LS009	chr19:35547240|35547324:+	TMEM147	transmembrane protein 147	protein coding gene	no	ENST00000222284.9;ENST00000593027.6;ENST00000392204.6;ENST00000477168.6;ENST00000595467.1;ENST00000599895.1;ENST00000222284.9;ENST00000593027.6;ENST00000392204.6;ENST00000477168.6;ENST00000595467.1;ENST00000599895.1	314.540	132.547	192.176	0.931(8916)	0.96(674)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_BAGE2_LS0003	chr21:10413912|10414811:+	BAGE2	BAGE family member 2	pseudogene	no	.	6.294	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PHC2_LS0063	chr1:33324165|33324880:+	PHC2	polyhomeotic homolog 2	protein coding gene	no	.	1.087	0.006	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MT-TH_UP_LS0023	chrM:4083|11274:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	699.687	116.543	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTPRK_LS052	chr6:128242602|128397566:-	PTPRK	protein tyrosine phosphatase receptor type K	protein coding gene	yes	ENST00000531050.5	0.917	0.050	0.673	0.015(142)	0.003(2)	0.025(442)	non tumor-specific	exon_skip	yes
ERICH1_LS014	chr8:637595|668598:-	ERICH1	glutamate rich 1	protein coding gene	no	.;.	1.184	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CTSZ_LS0028	chr20:59001652|59006331:+	CTSZ	cathepsin Z	protein coding gene	yes	.	8.892	3.449	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ADAMTS20_LS0012	chr12:43468429|43492505:-	ADAMTS20	ADAM metallopeptidase with thrombospondin type 1 motif 20	protein coding gene	no	.	2.393	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_YBEY_LS0015	chr21:46293043|46293636:-	YBEY	ybeY metalloendoribonuclease	protein coding gene	no	.	2.973	0.399	0.000	0.007(70)	0.006(4)	0(0)	non tumor-specific	nAS	no
FAM192A_LS045	chr16:57175590|57185821:-	FAM192A	proteasome activator subunit 3 interacting protein 1	protein coding gene	no	ENST00000564108.5;ENST00000564108.5	0.072	0.379	0.650	0.122(1167)	0.095(67)	0.105(1827)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
AP4M1_LS005	chr7:100101968|100102675:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	ENST00000445208.5;ENST00000359593.8;ENST00000439416.5;ENST00000446007.5;ENST00000421755.5;ENST00000416938.5;ENST00000445208.5;ENST00000359593.8;ENST00000439416.5;ENST00000446007.5;ENST00000421755.5;ENST00000416938.5	19.273	9.311	15.002	0.99(9488)	0.987(693)	0.977(16982)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC02562_UP_LS0010	chr4:75103926|75121925:-	LINC02562	long intergenic non-protein coding RNA 2562	lncRNA gene	no	.	3.210	1.278	0.000	0.087(833)	0.071(50)	0(0)	non tumor-specific	nAS	no
UN_PNLIPRP3_LS0006	chr10:116437351|116443055:+	PNLIPRP3	pancreatic lipase related protein 3	protein coding gene	no	.	3.510	1.089	0.000	0.02(194)	0.019(13)	0(0)	non tumor-specific	nAS	no
ZNF277_LS009	chr7:112327827|112330084:+	ZNF277	zinc finger protein 277	protein coding gene	no	ENST00000361822.7;ENST00000361946.8;ENST00000457808.5;ENST00000425229.5;ENST00000450657.1	33.073	22.233	22.133	0.991(9495)	0.997(700)	0.978(17008)	non tumor-specific	exon_skip	yes
UN_C19orf12_LS0043	chr19:29713396|29715125:-	C19orf12	chromosome 19 open reading frame 12	protein coding gene	no	.	1.429	0.071	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MIR5703_UP_LS0006	chr2:227382587|227392023:+	MIR5703	microRNA 5703	small non-coding RNA gene	no	.	6.903	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ISYNA1_LS006	chr19:18435921|18436032:-	ISYNA1	inositol-3-phosphate synthase 1	protein coding gene	no	ENST00000582811.6;ENST00000338128.12;ENST00000457269.8;ENST00000578963.5;ENST00000582770.6;ENST00000577916.6;ENST00000577820.5;ENST00000583816.2	141.447	49.974	81.195	0.99(9484)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MDM2_LS0026	chr12:68840376|68847686:-	MDM2	MDM2 proto-oncogene	protein coding gene	yes	.	7.109	9.468	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	nAS	no
NCAM1_LS008	chr11:113133448|113202379:+	NCAM1	neural cell adhesion molecule 1	protein coding gene	no	ENST00000525973.5;ENST00000611284.4	0.004	0.006	0.815	0.048(460)	0.064(45)	0.109(1886)	non tumor-specific	nAS	yes
ARL5C_LS005	chr17:39162858|39165079:-	ARL5C	ADP ribosylation factor like GTPase 5C	protein coding gene	no	ENST00000269586.11	0.330	0.000	0.607	0(2)	0(0)	0(5)	non tumor-specific	nAS	yes
AC010401.1_LS001	chr16:13930853|13935417:-	AC010401.1	-	lncRNA gene	no	ENST00000570663.1	0.511	0.017	0.657	0.001(11)	0.001(1)	0.001(26)	non tumor-specific	nAS	yes
UN_P3H1_LS0006	chr1:42746695|42746796:+	P3H1	prolyl 3-hydroxylase 1	protein coding gene	no	.	1.249	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0348	chr14:104946456|104949427:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	4.683	1.265	0.000	0.009(89)	0.003(2)	0(0)	non tumor-specific	nAS	no
COLCA1_LS003	chr11:111298666|111299594:-	COLCA1	colorectal cancer associated 1	lncRNA gene	no	ENST00000355430.4	4.809	5.641	5.791	0.763(7315)	0.846(594)	0.867(15065)	non tumor-specific	alt_5prime	yes
SNCAIP_LS043	chr5:122444732|122449845:+	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	ENST00000510658.5;ENST00000509154.6;ENST00000261368.12;ENST00000512385.5;ENST00000379538.7;ENST00000542191.5;ENST00000261367.11;ENST00000509023.5;ENST00000508017.5;ENST00000414317.6;ENST00000504884.6;ENST00000512146.6;ENST00000395469.6;ENST00000395466.6;ENST00000515215.6;ENST00000513719.1	4.760	3.208	4.456	0.692(6626)	0.862(605)	0.833(14475)	non tumor-specific	nAS	yes
DDX11_LS025	chr12:31089151|31089403:+	DDX11	DEAD/H-box helicase 11	protein coding gene	no	ENST00000542838.5;ENST00000228264.10;ENST00000438391.6;ENST00000435753.6;ENST00000540935.5;ENST00000539049.5;ENST00000536265.5;ENST00000545668.5;ENST00000350437.8;ENST00000542244.5;ENST00000542242.1;ENST00000545717.1	6.957	1.288	10.719	0.968(9279)	0.923(648)	0.96(16684)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL050343.1_LS001	chr1:51794053|51797955:+	AL050343.1	-	lncRNA gene	no	ENST00000588291.1	0.010	0.000	0.651	0.054(522)	0.043(30)	0.009(161)	non tumor-specific	nAS	yes
UN_FOXRED2_LS0038	chr22:36490265|36493633:-	FOXRED2	FAD dependent oxidoreductase domain containing 2	protein coding gene	no	.	6.854	0.125	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_AL080285.2_UP_LS0017	chr6:100161449|100196377:-	AL080285.2	-	pseudogene	no	.	1.431	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
C3_LS030	chr19:6696659|6697344:-	C3	complement C3	protein coding gene	no	ENST00000245907.10;ENST00000594005.1	576.150	761.947	117.400	0.977(9363)	0.997(700)	0.97(16862)	non tumor-specific	alt_5prime	yes
UN_IRF2BP1_UP_LS0003	chr19:45901825|45903277:-	IRF2BP1	interferon regulatory factor 2 binding protein 1	protein coding gene	no	.	1.016	0.119	0.000	0.005(48)	0.009(6)	0(0)	non tumor-specific	nAS	no
GAA_LS006	chr17:80101925|80104555:+	GAA	glucosidase alpha, acid	protein coding gene	no	ENST00000577106.5	0.181	0.199	1.282	0.836(8008)	0.886(622)	0.671(11656)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
THOC2_LS043	chrX:123634070|123636079:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5	23.732	12.874	13.239	0.879(8417)	0.942(661)	0.968(16822)	non tumor-specific	nAS	yes
LINC02428_LS006	chr4:103437046|103453600:+	LINC02428	long intergenic non-protein coding RNA 2428	lncRNA gene	no	ENST00000513793.5	5.140	4.426	0.987	0.12(1154)	0.11(77)	0.073(1273)	non tumor-specific	nAS	yes
LINC00598_LS010	chr13:40200891|40204328:-	LINC00598	long intergenic non-protein coding RNA 598	lncRNA gene	no	ENST00000638084.1	0.459	0.000	0.725	0(1)	0(0)	0.052(905)	non tumor-specific	nAS	yes
PIWIL1_LS011	chr12:130348183|130349239:+	PIWIL1	piwi like RNA-mediated gene silencing 1	protein coding gene	yes	ENST00000245255.7;ENST00000540672.2	2.605	0.193	0.775	0.079(757)	0.019(13)	0.041(716)	non tumor-specific	nAS	yes
UN_SRRT_LS0024	chr7:100885939|100886247:+	SRRT	serrate, RNA effector molecule	protein coding gene	no	.	13.065	1.979	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_SMYD2_LS0002	chr1:214281427|214305195:+	SMYD2	SET and MYND domain containing 2	protein coding gene	no	.	3.672	0.780	0.000	0.015(148)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
RGPD2_LS022	chr2:87816977|87818559:-	RGPD2	RANBP2 like and GRIP domain containing 2	protein coding gene	no	ENST00000398146.3;ENST00000638730.1	1.592	0.451	0.790	0.167(1604)	0.185(130)	0.214(3715)	non tumor-specific	nAS	yes
CLCN5_LS014	chrX:50072588|50075795:+	CLCN5	chloride voltage-gated channel 5	protein coding gene	no	ENST00000376088.7;ENST00000376091.7;ENST00000643129.1;ENST00000376108.7;ENST00000642885.1;ENST00000307367.2;ENST00000646398.1	4.321	7.195	1.272	0.529(5071)	0.568(399)	0.585(10162)	non tumor-specific	nAS	yes
RBL1_LS013	chr20:37056258|37061103:-	RBL1	RB transcriptional corepressor like 1	protein coding gene	yes	ENST00000373664.7;ENST00000344359.7;ENST00000525052.1	7.191	2.368	2.602	0.768(7362)	0.782(549)	0.869(15101)	non tumor-specific	nAS	yes
UN_TAS2R14_LS0046	chr12:11029138|11132045:+	TAS2R14	taste 2 receptor member 14	protein coding gene	no	.	14.286	0.234	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
PHF7_LS026	chr3:52422338|52422760:+	PHF7	PHD finger protein 7	protein coding gene	no	ENST00000327906.7;ENST00000461861.5;ENST00000327906.7;ENST00000461861.5	0.129	0.232	1.591	0.409(3918)	0.66(463)	0.717(12460)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC011247.1_LS0028	chr2:38424469|38430576:-	AC011247.1	-	lncRNA gene	no	.	2.689	3.924	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_NTS_UP_LS0014	chr12:85673415|85673985:+	NTS	neurotensin	protein coding gene	no	.	1.344	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UST_LS0045	chr6:149074092|149074469:-	UST	uronyl 2-sulfotransferase	protein coding gene	no	.	2.152	0.177	0.000	0.012(118)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_LINC01605_LS0053	chr8:37529190|37546154:-	LINC01605	long intergenic non-protein coding RNA 1605	lncRNA gene	no	.	1.479	0.140	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AP006222.1_LS0013	chr1:267056|268158:+	AP006222.1	-	pseudogene	no	.	1.869	0.083	0.000	0.02(191)	0.004(3)	0(0)	non tumor-specific	nAS	no
PLCB1_LS010	chr20:8305714|8371382:+	PLCB1	phospholipase C beta 1	protein coding gene	no	ENST00000636825.1	0.481	0.000	0.765	0(3)	0(0)	0.004(67)	non tumor-specific	nAS	yes
UN_AC245060.4_LS0015	chr22:22307245|22307550:+	AC245060.4	-	pseudogene	no	.	5.550	0.705	0.000	0.015(142)	0.01(7)	0(0)	non tumor-specific	nAS	no
RAD51D_LS036	chr17:35117037|35119111:-	RAD51D	RAD51 paralog D	protein coding gene	no	ENST00000590016.5;ENST00000585982.5	0.044	0.029	0.719	0.145(1389)	0.077(54)	0.183(3177)	non tumor-specific	exon_skip	yes
MTMR9_LS001	chr8:11285070|11295194:+	MTMR9	myotubularin related protein 9	protein coding gene	no	ENST00000221086.7;ENST00000530200.1	2.853	2.208	3.838	0.78(7470)	0.895(628)	0.927(16120)	non tumor-specific	nAS	yes
UN_LAMA5_LS0012	chr20:62309293|62309392:+	LAMA5	laminin subunit alpha 5	protein coding gene	no	.	3.138	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CCT2_LS012	chr12:69593613|69597156:+	CCT2	chaperonin containing TCP1 subunit 2	protein coding gene	no	ENST00000299300.10;ENST00000544368.6;ENST00000550010.5;ENST00000543146.2;ENST00000553169.1	235.792	100.907	135.440	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NDST1_LS023	chr5:150539356|150540082:+	NDST1	N-deacetylase and N-sulfotransferase 1	protein coding gene	no	ENST00000523767.5;ENST00000261797.6	40.968	37.095	27.050	0.965(9246)	0.99(695)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HNF1A-AS1_LS0056	chr12:120972679|120973763:+	HNF1A-AS1	HNF1A antisense RNA 1	lncRNA gene	no	.	1.142	0.256	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MTHFR_LS0008	chr1:11788047|11788652:+	MTHFR	methylenetetrahydrofolate reductase	protein coding gene	no	.	4.540	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
DTYMK_LS009	chr2:241678649|241685807:-	DTYMK	deoxythymidylate kinase	protein coding gene	no	.;.	11.764	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01732_LS001	chr1:181174575|181175337:+	LINC01732	long intergenic non-protein coding RNA 1732	lncRNA gene	no	ENST00000435023.1	0.098	0.000	0.666	0.006(53)	0(0)	0.011(190)	non tumor-specific	nAS	yes
UN_ANKAR_LS0005	chr2:189689964|189706938:+	ANKAR	ankyrin and armadillo repeat containing	protein coding gene	no	.	2.357	0.429	0.000	0.006(59)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
MFF_LS021	chr2:227328789|227330626:+	MFF	mitochondrial fission factor	protein coding gene	no	ENST00000304593.13;ENST00000354503.10;ENST00000337110.11;ENST00000349901.11;ENST00000304593.13;ENST00000354503.10;ENST00000337110.11;ENST00000349901.11;ENST00000304593.13;ENST00000354503.10;ENST00000337110.11;ENST00000349901.11	50.414	28.538	41.234	0.995(9537)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_H3F3A_LS0024	chr1:226068644|226071351:+	H3F3A	H3.3 histone A	protein coding gene	no	.	8.087	0.707	0.000	0.007(70)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_POM121C_LS0073	chr7:75484300|75485864:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	.	4.713	0.757	0.000	0.069(659)	0.047(33)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
VWA3A_LS036	chr16:22134438|22140154:+	VWA3A	von Willebrand factor A domain containing 3A	protein coding gene	no	.;.	6.536	0.893	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC105094.2_LS0015	chr18:61652403|61662225:+	AC105094.2	-	lncRNA gene	no	.	3.767	2.752	0.000	0.057(550)	0.095(67)	0(0)	non tumor-specific	nAS	no
AC004949.1_LS002	chr7:10561577|10779882:-	AC004949.1	-	lncRNA gene	no	ENST00000634803.1	4.495	0.000	0.752	0.002(15)	0(0)	0.001(25)	non tumor-specific	nAS	yes
SREK1_LS003	chr5:66144537|66153463:+	SREK1	splicing regulatory glutamic acid and lysine rich protein 1	protein coding gene	no	ENST00000612404.4;ENST00000334121.10;ENST00000523851.1;ENST00000520058.1;ENST00000522912.5;ENST00000524111.5	13.487	9.385	13.117	0.951(9111)	0.983(690)	0.968(16825)	non tumor-specific	nAS	yes
UN_EIF2B1_LS0010	chr12:123624878|123626425:-	EIF2B1	eukaryotic translation initiation factor 2B subunit alpha	protein coding gene	no	.	11.984	1.937	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
BEND2_LS001	chrX:18165223|18171001:-	BEND2	BEN domain containing 2	protein coding gene	no	ENST00000380033.8	40.285	0.000	0.779	0(4)	0(0)	0.039(676)	non tumor-specific	nAS	yes
UN_GAPDH_LS0111	chr12:6537630|6537685:-	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	84.896	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
USP54_LS018	chr10:73526780|73529680:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	ENST00000418501.5;ENST00000466048.6;ENST00000424265.5;ENST00000339859.8;ENST00000497106.5;ENST00000498143.5	11.352	11.151	16.839	0.889(8513)	0.9(632)	0.945(16426)	non tumor-specific	exon_skip	yes
CKLF_LS003	chr16:66552793|66563122:+	CKLF	Kruppel like factor 5	protein coding gene	no	ENST00000351137.8	45.461	17.061	20.968	0.96(9198)	0.981(689)	0.979(17009)	non tumor-specific	exon_skip	yes
TMEM219_LS015	chr16:29971578|29972950:+	TMEM219	transmembrane protein 219	protein coding gene	no	ENST00000414689.6;ENST00000279396.10;ENST00000566848.5;ENST00000569481.1	235.147	149.888	168.970	0.989(9477)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_FAM161B_LS0002	chr14:73938109|73940926:-	FAM161B	FAM161 centrosomal protein B	protein coding gene	no	.	1.946	0.860	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLEKHM2_LS004	chr1:15716816|15717893:+	PLEKHM2	pleckstrin homology and RUN domain containing M2	protein coding gene	no	ENST00000375799.7;ENST00000375793.2;ENST00000642363.1	59.516	40.660	48.415	0.988(9468)	0.996(699)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CAPSL_LS0001	chr5:35904719|35909866:-	CAPSL	calcyphosine like	protein coding gene	no	.	4.238	1.855	0.000	0.02(190)	0.021(15)	0(0)	non tumor-specific	alt_3prime	no
FGF13_LS009	chrX:138857679|138985018:-	FGF13	fibroblast growth factor 13	protein coding gene	no	ENST00000455663.5	0.612	0.030	0.602	0.005(46)	0.001(1)	0.009(153)	non tumor-specific	exon_skip	yes
UN_INO80E_LS0010	chr16:29996860|30000743:+	INO80E	INO80 complex subunit E	protein coding gene	no	.	8.595	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
EFHB_LS004	chr3:19884615|19896687:-	EFHB	EF-hand domain family member B	protein coding gene	no	ENST00000467602.5	0.461	0.216	0.891	0.187(1795)	0.316(222)	0.21(3656)	non tumor-specific	exon_skip	yes
UN_ABCC10_LS0013	chr6:43438013|43438337:+	ABCC10	ATP binding cassette subfamily C member 10	protein coding gene	no	.	1.187	0.580	0.000	0.069(659)	0.087(61)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_FAM86FP_LS0015	chr12:8235734|8238667:-	FAM86FP	family with sequence similarity 86 member F, pseudogene	pseudogene	no	.	5.086	2.649	0.000	0.341(3270)	0.477(335)	0(0)	non tumor-specific	nAS	no
UN_ITIH5_LS0029	chr10:7599931|7600529:-	ITIH5	inter-alpha-trypsin inhibitor heavy chain 5	protein coding gene	no	.	1.059	0.461	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_ERMARD_LS0016	chr6:169755422|169756397:+	ERMARD	ER membrane associated RNA degradation	protein coding gene	no	.	1.998	0.359	0.000	0.009(87)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_RHOG_LS0008	chr11:3827169|3827231:+	RHOG	ras homolog family member G	protein coding gene	no	.	3.723	0.302	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF614_LS001	chr19:52013246|52017117:-	ZNF614	zinc finger protein 614	protein coding gene	no	.;.	3.408	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
AP001628.2_LS001	chr21:42781778|42782151:-	AP001628.2	-	lncRNA gene	no	ENST00000420273.2	0.207	0.147	0.717	0.028(265)	0.036(25)	0.05(874)	non tumor-specific	nAS	yes
UN_EGR1_LS0220	chr5:138467840|138467865:-	EGR1	early growth response 1	protein coding gene	yes	.	23.978	35.867	0.000	0.018(170)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_CYS1_LS0002	chr2:10057545|10057696:+	CYS1	cystin 1	protein coding gene	no	.	4.447	2.294	0.000	0.001(12)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ATP10D_LS0038	chr4:47588110|47591042:+	ATP10D	ATPase phospholipid transporting 10D (putative)	protein coding gene	no	.	1.355	0.459	0.000	0.02(188)	0.034(24)	0(0)	non tumor-specific	exon_skip	no
UN_COLCA1_LS0011	chr11:111298405|111298513:+	COLCA1	colorectal cancer associated 1	lncRNA gene	no	.	4.408	0.177	0.000	0.01(98)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IQCH_LS0055	chr15:67430400|67431733:-	IQCH	spermatogenesis associated 17	protein coding gene	no	.	1.262	0.175	0.000	0.008(76)	0.004(3)	0(0)	non tumor-specific	nAS	no
GTF2IP1_LS022	chr7:75210599|75212079:-	GTF2IP1	general transcription factor IIi pseudogene 1	pseudogene	no	ENST00000622829.4;ENST00000616377.4;ENST00000614592.4;ENST00000622399.4	18.163	15.442	0.762	0.987(9458)	0.996(699)	0.347(6029)	non tumor-specific	nAS	yes
UN_AC008080.1_UP_LS0008	chr7:33641037|33642270:+	AC008080.1	-	lncRNA gene	no	.	2.918	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
IRAK3_LS002	chr12:66189432|66203711:+	IRAK3	interleukin 1 receptor associated kinase 3	protein coding gene	no	ENST00000261233.8	0.821	0.506	2.058	0.35(3354)	0.561(394)	0.702(12205)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP005230.1_LS0039	chr18:2038665|2039789:+	AP005230.1	-	lncRNA gene	no	.	2.106	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
FLRT2_LS010	chr14:85533993|85552737:+	FLRT2	fibronectin leucine rich transmembrane protein 2	protein coding gene	no	.;.	1.141	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNU6-958P_UP_LS0006	chr2:43224426|43232764:+	RNU6-958P	RNA, U6 small nuclear 958, pseudogene	small non-coding RNA gene	no	.	1.412	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC009533.1_LS0072	chr12:9311608|9311731:+	AC009533.1	-	pseudogene	no	.	2.567	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATP2B3_LS0019	chrX:153574921|153579978:+	ATP2B3	ATPase plasma membrane Ca2+ transporting 3	protein coding gene	no	.	4.351	1.270	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_POLR2A_LS0279	chr17:7513567|7513906:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	10.559	0.033	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
BNIP3_LS008	chr10:131973943|131981761:-	BNIP3	BCL2 interacting protein 3	protein coding gene	no	ENST00000368636.8;ENST00000540159.3;ENST00000633835.1;ENST00000631806.1	87.408	55.660	66.738	0.942(9027)	0.967(679)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ELK1P1_UP_LS0006	chr7:45454990|45455682:-	ELK1P1	ELK1 pseudogene 1	pseudogene	no	.	4.588	0.688	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
LPAR6_LS011	chr13:48415810|48417167:-	LPAR6	lysophosphatidic acid receptor 6	protein coding gene	no	ENST00000465365.6;ENST00000345941.2	0.679	0.221	0.838	0.071(682)	0.085(60)	0.112(1948)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP1G2_LS0083	chr14:23567422|23567664:+	AP1G2	adaptor related protein complex 1 subunit gamma 2	protein coding gene	no	.	3.032	0.045	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRAV31_UP_LS0004	chr14:22169474|22169642:+	TRAV31	T cell receptor alpha variable 31 (pseudogene)	no	no	.	6.479	0.618	0.000	0.013(128)	0.001(1)	0(0)	non tumor-specific	nAS	no
PSORS1C1_LS020	chr6:31137681|31138359:+	PSORS1C1	psoriasis susceptibility 1 candidate 1	protein coding gene	no	ENST00000547221.1	0.100	0.172	0.756	0.178(1704)	0.061(43)	0.064(1110)	non tumor-specific	alt_5prime;intron_retention	yes
ZC3H14_LS009	chr14:88567916|88568039:+	ZC3H14	zinc finger CCCH-type containing 14	protein coding gene	no	ENST00000556158.5	0.034	0.002	0.686	0.063(603)	0.05(35)	0.159(2761)	non tumor-specific	exon_skip;intron_retention	yes
EPAS1_LS014	chr2:46376753|46377894:+	EPAS1	endothelial PAS domain protein 1	protein coding gene	yes	ENST00000263734.4;ENST00000483692.1	117.215	216.913	118.988	0.975(9346)	0.997(700)	0.976(16958)	non tumor-specific	alt_3prime;exon_skip	yes
LY6G5C_LS007	chr6:31681401|31683988:-	LY6G5C	lymphocyte antigen 6 family member G5C	protein coding gene	no	ENST00000467098.1	0.029	0.001	0.689	0.056(541)	0.05(35)	0.01(182)	non tumor-specific	nAS	yes
UN_SOS2_LS0027	chr14:50160086|50161051:-	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein coding gene	no	.	1.025	0.251	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
TLE4_LS042	chr9:79706899|79707123:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	ENST00000376537.8;ENST00000417836.1	0.104	0.107	0.880	0.154(1474)	0.389(273)	0.351(6101)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CST3_LS0053	chr20:23633848|23633884:+	CST3	cystatin C	protein coding gene	no	.	36.152	0.783	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ELP3_LS0032	chr8:28178071|28182436:-	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	.	5.112	1.474	0.000	0.025(239)	0.061(43)	0(0)	non tumor-specific	nAS	no
JUP_LS024	chr17:41771862|41772818:-	JUP	junction plakoglobin	protein coding gene	yes	ENST00000424457.5;ENST00000437369.5;ENST00000465293.1	1.872	3.241	2.060	0.754(7227)	0.855(600)	0.63(10942)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
HSPA9_LS008	chr5:138557496|138557869:-	HSPA9	heat shock protein family A (Hsp70) member 9	protein coding gene	no	ENST00000649126.1;ENST00000649578.1;ENST00000297185.8;ENST00000524109.1;ENST00000512328.1	450.757	265.418	229.118	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PTCD2_LS016	chr5:72335885|72338622:+	PTCD2	pentatricopeptide repeat domain 2	protein coding gene	no	ENST00000536805.5;ENST00000543322.5;ENST00000380639.9;ENST00000515198.5;ENST00000511752.5;ENST00000486995.5;ENST00000308077.9;ENST00000503868.5;ENST00000510676.6;ENST00000503315.5;ENST00000493283.5;ENST00000460837.2	7.802	5.063	6.271	0.936(8972)	0.97(681)	0.951(16536)	non tumor-specific	nAS	yes
UN_AL162413.1_UP_LS0034	chr9:10994265|11064969:-	AL162413.1	-	lncRNA gene	no	.	7.945	0.823	0.000	0.135(1289)	0.011(8)	0(0)	non tumor-specific	nAS	no
AFM_LS010	chr4:73495432|73497652:+	AFM	afamin	protein coding gene	no	ENST00000226355.4;ENST00000505794.1	8.009	67.546	0.964	0.101(965)	0.256(180)	0.088(1531)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_PTPRA_LS0036	chr20:2988474|2999331:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	2.247	0.403	0.000	0.016(152)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_FGFRL1_LS0015	chr4:1011954|1012169:+	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	1.002	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PMM2_LS007	chr16:8801910|8802261:+	PMM2	phosphomannomutase 2	protein coding gene	no	ENST00000568602.5;ENST00000568602.5	0.016	0.003	0.669	0.091(875)	0.051(36)	0.166(2891)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_ZNF260_LS0015	chr19:36514368|36514705:+	ZNF260	zinc finger protein 260	protein coding gene	no	.	1.886	0.257	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DAGLA_LS0001	chr11:61680504|61720115:+	DAGLA	diacylglycerol lipase alpha	protein coding gene	no	.	0.723	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBC1D22A_UP_LS0007	chr22:46676668|46682411:+	TBC1D22A	TBC1 domain family member 22A	protein coding gene	no	.	7.752	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC006453.1_UP_LS0042	chr2:89862908|89914320:-	AC006453.1	-	pseudogene	no	.	150.849	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC024587.2_LS003	chr5:107702307|107708887:-	AC024587.2	-	lncRNA gene	no	ENST00000502287.1	0.132	0.000	0.631	0(1)	0(0)	0.002(38)	non tumor-specific	nAS	yes
UN_LINC01730_LS0005	chr20:3811741|3812187:+	LINC01730	long intergenic non-protein coding RNA 1730	lncRNA gene	no	.	2.384	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
TLR2_LS007	chr4:153688047|153702892:+	TLR2	toll like receptor 2	protein coding gene	no	ENST00000646900.1;ENST00000644308.1;ENST00000642700.1	7.378	4.844	0.000	0.695(6659)	0.809(568)	0(0)	non tumor-specific	nAS	yes
UN_ABR_LS0118	chr17:1100735|1101388:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	4.131	0.234	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
COQ3_LS007	chr6:99380341|99383698:-	COQ3	coenzyme Q3, methyltransferase	protein coding gene	no	ENST00000254759.7	10.983	7.947	7.607	0.98(9385)	0.989(694)	0.964(16759)	non tumor-specific	exon_skip	yes
UN_AP005230.1_LS0053	chr18:2111736|2117042:-	AP005230.1	-	lncRNA gene	no	.	3.806	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TBX1_LS003	chr22:19761280|19763241:+	TBX1	T-box transcription factor 1	protein coding gene	no	ENST00000332710.8;ENST00000329705.11;ENST00000359500.7;ENST00000649276.1;ENST00000475303.1	5.694	1.475	5.939	0.612(5861)	0.748(525)	0.761(13223)	non tumor-specific	exon_skip	yes
UN_DHCR24_LS0152	chr1:54851921|54852221:+	DHCR24	24-dehydrocholesterol reductase	protein coding gene	no	.	2.259	0.403	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
TOMM70_LS005	chr3:100373645|100375018:-	TOMM70	translocase of outer mitochondrial membrane 70	protein coding gene	no	ENST00000284320.5	96.354	59.396	39.496	0.995(9530)	0.997(700)	0.978(17004)	non tumor-specific	exon_skip	yes
UN_RPL19P16_UP_LS0025	chr10:121313361|121459550:-	RPL19P16	ribosomal protein L19 pseudogene 16	pseudogene	no	.	4.724	0.313	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
OGDH_LS004	chr7:44606653|44624317:+	OGDH	oxoglutarate dehydrogenase	protein coding gene	no	ENST00000439616.6;ENST00000443864.6;ENST00000447398.5;ENST00000449767.5;ENST00000444676.5;ENST00000631326.2;ENST00000222673.5;ENST00000439616.6;ENST00000443864.6;ENST00000447398.5;ENST00000449767.5;ENST00000444676.5;ENST00000631326.2;ENST00000222673.5	24.620	27.947	38.879	0.914(8761)	0.917(644)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KRT8_LS0163	chr12:52898809|52898885:-	KRT8	keratin 8	protein coding gene	no	.	700.068	253.601	0.000	0.068(651)	0.056(39)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SLC22A18AS_LS003	chr11:2888635|2902584:-	SLC22A18AS	solute carrier family 22 member 18 antisense	protein coding gene	no	ENST00000455942.3	4.466	6.580	1.326	0.395(3784)	0.392(275)	0.319(5543)	non tumor-specific	exon_skip	yes
LINC02492_LS004	chr4:187555144|187555776:-	LINC02492	long intergenic non-protein coding RNA 2492	lncRNA gene	no	ENST00000515660.5	0.542	0.000	0.757	0(2)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_FGFRL1_LS0002	chr4:1010847|1011114:-	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	0.817	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCDC8_LS0031	chr19:46411789|46411862:-	CCDC8	coiled-coil domain containing 8	protein coding gene	no	.	7.715	2.421	0.000	0.02(190)	0.034(24)	0(0)	non tumor-specific	nAS	no
MIR646HG_LS019	chr20:60180913|60318921:+	MIR646HG	MIR646 host gene	lncRNA gene	no	ENST00000432910.5	0.940	0.230	0.717	0.089(851)	0.083(58)	0.175(3042)	non tumor-specific	nAS	yes
UN_HSF2BP_LS0022	chr21:43596879|43597065:-	HSF2BP	heat shock transcription factor 2 binding protein	protein coding gene	no	.	2.756	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
TENM1_LS036	chrX:124653783|124671683:-	TENM1	teneurin transmembrane protein 1	protein coding gene	no	ENST00000371130.7;ENST00000422452.2	2.872	0.558	1.141	0.115(1100)	0.038(27)	0.413(7182)	non tumor-specific	nAS	yes
CACNA1C_LS007	chr12:2486262|2493190:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000335762.9;ENST00000399655.5;ENST00000480911.5;ENST00000399595.5;ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000399621.5;ENST00000399637.5;ENST00000399591.5;ENST00000399641.5;ENST00000347598.8;ENST00000399606.5;ENST00000399601.5;ENST00000344100.7;ENST00000399629.5;ENST00000327702.11;ENST00000399649.5;ENST00000402845.7;ENST00000399603.5;ENST00000399634.5;ENST00000399617.5;ENST00000406454.7	1.122	1.622	2.272	0.229(2197)	0.413(290)	0.664(11538)	non tumor-specific	alt_3prime;exon_skip	yes
SLC51B_LS003	chr15:65051605|65052966:+	SLC51B	solute carrier family 51 subunit beta	protein coding gene	no	ENST00000334287.2	5.144	25.621	1.545	0.329(3156)	0.553(388)	0.322(5593)	non tumor-specific	nAS	yes
DAZAP2_LS005	chr12:51239335|51240343:+	DAZAP2	DAZ associated protein 2	protein coding gene	no	ENST00000551313.1	0.030	1.520	0.746	0.786(7530)	0.819(575)	0.288(5009)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AC087632.1_LS0007	chr15:64204949|64213890:-	AC087632.1	-	protein coding gene	no	.	2.394	0.089	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HNRNPA1_LS0027	chr12:54283907|54283938:+	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	.	64.868	6.810	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
RNF38_LS022	chr9:36390616|36401098:-	RNF38	ring finger protein 38	protein coding gene	no	ENST00000377885.6;ENST00000491349.5	0.078	0.201	0.766	0.429(4112)	0.645(453)	0.314(5466)	non tumor-specific	alt_5prime;exon_skip	yes
PRKDC_LS006	chr8:47778799|47779004:-	PRKDC	protein kinase, DNA-activated, catalytic subunit	protein coding gene	no	ENST00000314191.6;ENST00000338368.7;ENST00000521331.5;ENST00000536710.1	85.662	19.548	49.562	0.991(9495)	0.99(695)	0.979(17017)	non tumor-specific	nAS	yes
UN_DNM1_LS0013	chr9:128235127|128239445:+	DNM1	dynamin 1	protein coding gene	no	.	1.092	0.691	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DLEU1_LS021	chr13:50390291|50401226:+	DLEU1	deleted in lymphocytic leukemia 1	lncRNA gene	yes	ENST00000483444.5;ENST00000489542.6	0.441	0.000	0.765	0.005(46)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_FP236383.2_UP_LS0085	chr21:8398354|8442471:-	FP236383.2	-	lncRNA gene	no	.	290.330	37.831	0.000	0.02(192)	0.016(11)	0(0)	non tumor-specific	nAS	no
VPS13D_LS014	chr1:12262080|12266881:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4	2.620	3.288	4.183	0.523(5012)	0.781(548)	0.892(15506)	non tumor-specific	alt_5prime	yes
UN_LINC01510_LS0014	chr7:116628154|116628278:-	LINC01510	cytosolic oncogenic antisense to MET transcript	lncRNA gene	no	.	3.230	0.400	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC100860.1_UP_LS0008	chr8:141037442|141039219:+	AC100860.1	-	lncRNA gene	no	.	2.115	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
PCDH15_LS062	chr10:54378942|54527812:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000373965.6;ENST00000644397.1;ENST00000614895.4;ENST00000414778.5;ENST00000616114.4;ENST00000621708.4;ENST00000395442.5;ENST00000395440.5;ENST00000617271.4;ENST00000395446.5;ENST00000414367.5;ENST00000613657.4;ENST00000395445.5;ENST00000395438.5;ENST00000612394.4;ENST00000395432.6;ENST00000617051.4;ENST00000622048.4;ENST00000361849.7;ENST00000395430.5;ENST00000373956.7;ENST00000373957.7;ENST00000448885.5;ENST00000437009.5;ENST00000320301.10;ENST00000373955.5;ENST00000458638.1	8.378	0.383	1.371	0.061(585)	0.124(87)	0.156(2711)	non tumor-specific	exon_skip	yes
UN_PRR15L_LS0012	chr17:47953134|47957657:-	PRR15L	proline rich 15 like	protein coding gene	no	.	4.371	0.412	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
NCOR1_LS038	chr17:16086442|16091863:-	NCOR1	nuclear receptor corepressor 1	protein coding gene	no	ENST00000268712.7;ENST00000395857.7;ENST00000395851.5	25.186	20.314	12.600	0.891(8533)	0.969(680)	0.972(16895)	non tumor-specific	exon_skip	yes
TM2D3_LS017	chr15:101650161|101651828:-	TM2D3	TM2 domain containing 3	protein coding gene	no	ENST00000558677.5	0.051	0.047	0.673	0.675(6465)	0.736(517)	0.012(204)	non tumor-specific	alt_5prime;intron_retention	yes
MIER2_LS013	chr19:327256|327864:-	MIER2	MIER family member 2	protein coding gene	no	ENST00000264819.6;ENST00000635755.1;ENST00000586994.7;ENST00000621180.4	24.774	12.468	21.303	0.987(9460)	0.986(692)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PIGL_LS0028	chr17:16313614|16313912:+	PIGL	phosphatidylinositol glycan anchor biosynthesis class L	protein coding gene	no	.	2.376	0.425	0.000	0.019(186)	0.016(11)	0(0)	non tumor-specific	nAS	no
SCGB1B2P_LS003	chr19:34577456|34577543:-	SCGB1B2P	secretoglobin family 1B member 2, pseudogene	lncRNA gene	no	ENST00000595013.1	3.231	1.446	4.779	0.655(6274)	0.679(477)	0.933(16214)	non tumor-specific	nAS	yes
UN_MLIP_LS0041	chr6:54083616|54121447:+	MLIP	muscular LMNA interacting protein	protein coding gene	no	.	3.122	0.515	0.000	0.03(288)	0.038(27)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FAM30A_UP_LS0039	chr14:105864268|105916836:+	FAM30A	family with sequence similarity 30 member A	lncRNA gene	no	.	0.698	15.774	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SORD_LS0021	chr15:45070034|45072317:+	SORD	sorbitol dehydrogenase	protein coding gene	no	.	1.889	0.031	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PHTF2_LS0023	chr7:77940302|77949678:+	PHTF2	putative homeodomain transcription factor 2	protein coding gene	no	.	1.924	0.102	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HK2_LS009	chr2:74877321|74878688:+	HK2	kinesin family member 2A	protein coding gene	no	ENST00000290573.6;ENST00000409174.1	28.773	20.109	5.481	0.896(8581)	0.845(593)	0.843(14648)	non tumor-specific	nAS	yes
UN_LINC00476_LS0022	chr9:95813922|95875865:-	LINC00476	long intergenic non-protein coding RNA 476	lncRNA gene	no	.	2.048	0.624	0.000	0.014(138)	0.017(12)	0(0)	non tumor-specific	nAS	no
USP42_LS016	chr7:6144196|6145516:+	USP42	ubiquitin specific peptidase 42	protein coding gene	no	ENST00000306177.9;ENST00000404008.6;ENST00000479544.6;ENST00000465073.6;ENST00000521713.1;ENST00000426246.2	9.439	5.134	6.155	0.9(8625)	0.936(657)	0.953(16569)	non tumor-specific	nAS	yes
UN_CNGB3_LS0020	chr8:86627990|86679892:+	CNGB3	cyclic nucleotide gated channel subunit beta 3	protein coding gene	no	.	3.834	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CBY1_LS013	chr22:38668132|38670767:+	CBY1	chibby family member 1, beta catenin antagonist	protein coding gene	no	ENST00000489847.1;ENST00000467118.1	1.241	1.061	3.492	0.88(8430)	0.868(609)	0.919(15979)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
CSGALNACT1_LS033	chr8:19732566|19757186:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000522573.5	0.191	0.153	0.724	0.071(681)	0.132(93)	0.171(2969)	non tumor-specific	exon_skip;mutex_exons	yes
DBP_LS005	chr19:48635990|48636856:-	DBP	hydroxysteroid 17-beta dehydrogenase 4	protein coding gene	no	ENST00000222122.9;ENST00000594723.1;ENST00000601104.1	16.960	7.397	11.475	0.918(8793)	0.932(654)	0.96(16682)	non tumor-specific	nAS	yes
MUM1L1_LS009	chrX:106204170|106205219:+	MUM1L1	PWWP domain containing 3B	protein coding gene	no	ENST00000337685.6;ENST00000357175.6;ENST00000372552.1	2.645	3.042	2.683	0.339(3244)	0.57(400)	0.497(8639)	non tumor-specific	nAS	yes
UN_ZNF573_LS0021	chr19:37780023|37789151:+	ZNF573	zinc finger protein 573	protein coding gene	no	.	3.559	1.054	0.000	0.233(2229)	0.226(159)	0(0)	non tumor-specific	nAS	no
UN_SFI1_LS0032	chr22:31598694|31606976:+	SFI1	SFI1 centrin binding protein	protein coding gene	no	.	1.788	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
VLDLR_LS022	chr9:2651498|2651874:+	VLDLR	very low density lipoprotein receptor	protein coding gene	no	ENST00000382100.7	9.871	7.787	7.772	0.772(7394)	0.869(610)	0.905(15731)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
NEK6_LS024	chr9:124326438|124327338:+	NEK6	NIMA related kinase 6	protein coding gene	no	ENST00000540326.5;ENST00000373603.5;ENST00000373600.7;ENST00000320246.9;ENST00000545174.5;ENST00000444973.5;ENST00000454453.5;ENST00000373596.5;ENST00000425237.5;ENST00000546191.5;ENST00000422297.5;ENST00000539416.5;ENST00000394199.6	37.366	19.083	25.849	0.988(9463)	0.991(696)	0.979(17009)	non tumor-specific	exon_skip	yes
UN_TBCB_LS0040	chr19:36121718|36124250:+	TBCB	tubulin folding cofactor B	protein coding gene	no	.	4.458	0.187	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_NT5DC3_LS0018	chr12:103788919|103791920:-	NT5DC3	5'-nucleotidase domain containing 3	protein coding gene	no	.	0.619	0.150	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
SNHG14_LS131	chr15:25243557|25243940:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000453082.5	3.834	0.861	2.249	0.028(273)	0.01(7)	0.365(6342)	non tumor-specific	nAS	yes
APBA1_LS008	chr9:69457139|69467823:-	APBA1	amyloid beta precursor protein binding family A member 1	protein coding gene	no	ENST00000470082.2	1.642	1.592	1.893	0.588(5638)	0.806(566)	0.731(12702)	non tumor-specific	exon_skip	yes
UN_WHAMMP3_LS0008	chr15:22678964|22681176:+	WHAMMP3	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3	pseudogene	no	.	1.917	0.363	0.000	0.025(235)	0.024(17)	0(0)	non tumor-specific	nAS	no
ADAMTSL3_LS032	chr15:84016499|84021410:+	ADAMTSL3	ADAMTS like 3	protein coding gene	no	ENST00000286744.9;ENST00000567476.1;ENST00000561483.5	5.403	7.835	5.743	0.411(3938)	0.873(613)	0.838(14558)	non tumor-specific	exon_skip	yes
KALRN_LS032	chr3:124455359|124456610:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	ENST00000460856.5;ENST00000240874.7;ENST00000360013.7;ENST00000354186.8;ENST00000393501.5;ENST00000494648.1	1.820	7.229	5.874	0.556(5325)	0.732(514)	0.876(15231)	non tumor-specific	exon_skip	yes
HAND2_LS010	chr4:173529625|173530180:-	HAND2	heart and neural crest derivatives expressed 2	protein coding gene	no	ENST00000505300.1	0.677	0.000	0.654	0.001(5)	0(0)	0(3)	non tumor-specific	nAS	yes
SMG1P7_LS006	chr16:70221401|70222371:-	SMG1P7	SMG1 pseudogene 7	pseudogene	no	ENST00000581050.5	7.432	3.372	13.573	0.534(5115)	0.315(221)	0.976(16968)	non tumor-specific	nAS	yes
AC068946.2_LS010	chr2:219213951|219214121:-	AC068946.2	-	protein coding gene	no	ENST00000446716.5	35.683	17.839	34.686	0.991(9495)	0.997(700)	0.979(17017)	non tumor-specific	nAS	yes
UN_LAMA2_LS0001	chr6:128883357|128911550:+	LAMA2	laminin subunit alpha 2	protein coding gene	no	.	1.351	0.320	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
GTF2H5_LS006	chr6:158187121|158191977:+	GTF2H5	general transcription factor IIH subunit 5	protein coding gene	no	ENST00000648328.1	1.940	0.765	0.000	0.145(1394)	0.125(88)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC14A2_LS0039	chr18:45575070|45611491:-	SLC14A2	solute carrier family 14 member 2	protein coding gene	no	.	3.671	0.319	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SH2D3A_LS0021	chr19:6760984|6763680:-	SH2D3A	SH2 domain containing 3A	protein coding gene	no	.	4.701	0.992	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DPYS_LS0026	chr8:104380380|104381184:-	DPYS	dihydropyrimidinase	protein coding gene	no	.	9.461	10.698	0.000	0.029(274)	0.074(52)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
LINC01320_LS015	chr2:34677927|34691591:+	LINC01320	long intergenic non-protein coding RNA 1320	lncRNA gene	no	ENST00000627935.2;ENST00000626688.2	0.525	0.007	0.990	0.1(956)	0.187(131)	0.009(151)	non tumor-specific	nAS	yes
CCT8_LS007	chr21:29062415|29062490:-	CCT8	chaperonin containing TCP1 subunit 8	protein coding gene	no	ENST00000540844.5;ENST00000470450.5;ENST00000286788.8;ENST00000626972.2;ENST00000480359.1;ENST00000475205.1;ENST00000431234.1	368.311	160.227	191.431	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
STON1-GTF2A1L_LS009	chr2:48642457|48645033:+	STON1-GTF2A1L	STON1-GTF2A1L readthrough	protein coding gene	no	ENST00000405008.5;ENST00000402114.6;ENST00000394754.5	1.514	1.146	2.343	0.162(1555)	0.296(208)	0.561(9745)	non tumor-specific	nAS	yes
DENND4B_LS031	chr1:153941440|153941869:-	DENND4B	DENN domain containing 4B	protein coding gene	no	ENST00000361217.8;ENST00000368646.6;ENST00000483561.2	4.899	2.813	36.013	0.968(9271)	0.964(677)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
ATL2_LS006	chr2:38296590|38296686:-	ATL2	atlastin GTPase 2	protein coding gene	no	ENST00000406122.5;ENST00000629272.2	0.822	0.463	1.573	0.368(3525)	0.328(230)	0.699(12152)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC00678_LS002	chr11:27618178|27620757:-	LINC00678	long intergenic non-protein coding RNA 678	lncRNA gene	no	ENST00000534757.1	0.428	0.000	0.871	0(3)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_KRT6A_LS0083	chr12:52491171|52491522:+	KRT6A	keratin 6A	protein coding gene	no	.	10.242	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
RASAL1_LS021	chr12:113114912|113115200:-	RASAL1	RAS protein activator like 1	protein coding gene	yes	ENST00000546530.5;ENST00000261729.9;ENST00000446861.7;ENST00000548055.1;ENST00000551051.5;ENST00000546727.5;ENST00000418411.6;ENST00000548972.5	14.760	15.051	15.150	0.623(5968)	0.608(427)	0.532(9249)	non tumor-specific	alt_3prime;intron_retention	yes
MAP4K5_LS009	chr14:50438008|50438092:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000557124.1	2.014	2.140	17.142	0.957(9167)	0.974(684)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
GTF2A1_LS004	chr14:81196241|81197409:-	GTF2A1	general transcription factor IIA subunit 1	protein coding gene	no	ENST00000553612.5;ENST00000298173.7;ENST00000434192.2	19.652	14.679	7.114	0.938(8985)	0.977(686)	0.958(16649)	non tumor-specific	alt_3prime	yes
UN_HMGN2P46_LS0025	chr15:45536209|45555473:+	HMGN2P46	high mobility group nucleosomal binding domain 2 pseudogene 46	pseudogene	no	.	1.063	0.206	0.000	0.009(90)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ASPH_LS0036	chr8:61578252|61578539:+	ASPH	aspartate beta-hydroxylase	protein coding gene	no	.	91.368	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
TP53RK_LS002	chr20:46687231|46689132:-	TP53RK	TP53 regulating kinase	protein coding gene	no	ENST00000372114.3	12.880	4.990	18.142	0.955(9148)	0.95(667)	0.978(17004)	non tumor-specific	alt_5prime	yes
UN_IGHG4_UP_LS0100	chr14:105643525|105668327:-	IGHG4	immunoglobulin heavy constant gamma 4 (G4m marker)	no	no	.	1262.304	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
HS3ST2_LS005	chr16:22833448|22854664:+	HS3ST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein coding gene	no	ENST00000473392.1	1.166	0.644	0.744	0.142(1361)	0.123(86)	0.128(2222)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL389915.1_UP_LS0011	chr9:107369229|107372321:+	AL389915.1	-	pseudogene	no	.	2.873	1.248	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
SETD1B_LS006	chr12:121808320|121809801:+	SETD1B	SET domain containing 1B, histone lysine methyltransferase	protein coding gene	no	.;.	1.563	0.049	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC234582.2_UP_LS0054	chr1:155217259|155238139:-	AC234582.2	-	lncRNA gene	no	.	12.353	1.888	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	nAS	no
ERH_LS008	chr14:69394912|69398231:-	ERH	ERH mRNA splicing and mitosis factor	protein coding gene	no	ENST00000557016.5;ENST00000555373.1;ENST00000557016.5;ENST00000555373.1;ENST00000557016.5;ENST00000555373.1	92.538	51.008	202.013	0.976(9355)	0.979(687)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
KCNIP3_LS012	chr2:95374917|95375138:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	ENST00000295225.9;ENST00000377181.2;ENST00000360990.7;ENST00000468529.1	15.341	10.141	10.152	0.629(6027)	0.774(543)	0.912(15852)	non tumor-specific	exon_skip	yes
TAF1_LS028	chrX:71406746|71407574:+	TAF1	TATA-box binding protein associated factor 1	protein coding gene	yes	ENST00000423759.5;ENST00000373790.8;ENST00000276072.7;ENST00000463163.5;ENST00000437147.7;ENST00000373775.8	16.646	9.891	12.447	0.883(8460)	0.959(673)	0.972(16902)	non tumor-specific	alt_3prime	yes
LIN7B_LS012	chr19:49118018|49118352:+	LIN7B	lin-7 homolog B, crumbs cell polarity complex component	protein coding gene	no	ENST00000391864.7;ENST00000221459.6;ENST00000469137.5	13.185	9.062	12.941	0.961(9203)	0.986(692)	0.968(16834)	non tumor-specific	alt_5prime;intron_retention	yes
UN_BAIAP2L1_LS0013	chr7:98306513|98307689:-	BAIAP2L1	BAR/IMD domain containing adaptor protein 2 like 1	protein coding gene	yes	.	12.088	0.552	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MIR6088_UP_LS0003	chr19:45399553|45433456:+	MIR6088	microRNA 6088	small non-coding RNA gene	no	.	3.968	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SHLD2_LS0076	chr10:87121907|87151350:+	SHLD2	shieldin complex subunit 2	protein coding gene	no	.	1.747	0.660	0.000	0.076(724)	0.068(48)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UBXN4_LS020	chr2:135779079|135780163:+	UBXN4	UBX domain protein 4	protein coding gene	no	ENST00000471246.1	0.891	0.350	0.670	0.719(6890)	0.771(541)	0.049(845)	non tumor-specific	alt_3prime	yes
MCOLN1_LS002	chr19:7525166|7526439:+	MCOLN1	mucolipin 1	protein coding gene	no	ENST00000264079.10;ENST00000394321.9;ENST00000601003.1	26.304	16.694	32.159	0.986(9450)	0.996(699)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DNAH14_LS039	chr1:225119294|225123527:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000328556.9;ENST00000495456.1	0.375	0.099	0.960	0.195(1871)	0.107(75)	0.299(5195)	non tumor-specific	exon_skip;mutex_exons	yes
UN_IGFBP4_LS0099	chr17:40456998|40457104:-	IGFBP4	insulin like growth factor binding protein 4	protein coding gene	yes	.	10.077	1.927	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CTPS2_LS0015	chrX:16630182|16631642:+	CTPS2	CTP synthase 2	protein coding gene	no	.	3.708	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FA2H_LS0025	chr16:74740115|74741045:-	FA2H	fatty acid 2-hydroxylase	protein coding gene	no	.	1.635	0.040	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
RBM34_LS010	chr1:235155112|235160511:-	RBM34	RNA binding motif protein 34	protein coding gene	no	ENST00000408888.7;ENST00000447801.5;ENST00000476261.5;ENST00000468751.5;ENST00000475960.1	77.326	38.776	40.905	0.996(9547)	0.997(700)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC108136.1_UP_LS0033	chr8:122667289|122670360:-	AC108136.1	-	lncRNA gene	no	.	1.060	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARNTL_LS0013	chr11:13346436|13349945:+	ARNTL	aryl hydrocarbon receptor nuclear translocator like	protein coding gene	yes	.	0.945	1.063	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PRMT8_LS003	chr12:3538707|3540606:+	PRMT8	protein arginine methyltransferase 8	protein coding gene	no	ENST00000261252.4	1.144	0.205	0.793	0.015(145)	0.013(9)	0.02(339)	non tumor-specific	exon_skip	yes
UN_DLEU1_LS0047	chr13:50528305|50533193:+	DLEU1	deleted in lymphocytic leukemia 1	lncRNA gene	yes	.	2.108	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PQLC1_LS0070	chr18:79943462|79943711:-	PQLC1	solute carrier family 66 member 2	protein coding gene	no	.	2.256	0.132	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
NBPF12_LS028	chr1:146972960|146974739:+	NBPF12	NBPF member 12	protein coding gene	yes	ENST00000617931.4;ENST00000617844.4;ENST00000611443.4;ENST00000617614.4;ENST00000613714.2	3.382	2.360	2.071	0.779(7463)	0.877(616)	0.685(11907)	non tumor-specific	nAS	yes
CBWD2_LS017	chr2:113465173|113471033:+	CBWD2	COBW domain containing 2	protein coding gene	no	ENST00000259199.8;ENST00000433343.6;ENST00000358604.7;ENST00000456188.5;ENST00000259199.8;ENST00000433343.6;ENST00000358604.7;ENST00000456188.5	35.296	21.563	14.776	0.994(9524)	0.997(700)	0.975(16947)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TP63_LS0010	chr3:189808526|189864229:+	TP63	symbol withdrawn, see [HGNC:15979](/data/gene-symbol-report/#!/hgnc_id/HGNC:15979)	protein coding gene	yes	.	5.249	0.697	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LRRC47_LS0073	chr1:3796161|3796234:+	LRRC47	leucine rich repeat containing 47	protein coding gene	no	.	0.835	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
KIF12_LS039	chr9:114098190|114098302:-	KIF12	kinesin family member 12	protein coding gene	no	ENST00000640217.1;ENST00000468460.2	11.794	16.794	2.755	0.282(2704)	0.48(337)	0.328(5708)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
COASY_LS008	chr17:42562219|42562612:+	COASY	Coenzyme A synthase	protein coding gene	no	ENST00000421097.6;ENST00000421097.6	7.773	8.390	11.805	0.955(9147)	0.976(685)	0.972(16893)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ADAMTS12_LS003	chr5:33546202|33549207:-	ADAMTS12	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein coding gene	no	ENST00000504830.5;ENST00000352040.7	5.133	2.234	1.726	0.526(5044)	0.318(223)	0.556(9670)	non tumor-specific	nAS	yes
A2M_LS014	chr12:9077420|9077701:-	A2M	alpha-2-macroglobulin	protein coding gene	no	ENST00000318602.11	635.540	997.721	443.463	0.985(9442)	0.997(700)	0.977(16977)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PIGX_LS0048	chr3:196731082|196733759:+	PIGX	phosphatidylinositol glycan anchor biosynthesis class X	protein coding gene	no	.	9.097	1.190	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
FASTKD2_LS008	chr2:206772017|206772181:+	FASTKD2	FAST kinase domains 2	protein coding gene	no	ENST00000236980.10;ENST00000402774.7;ENST00000403094.3;ENST00000487777.5	38.699	23.740	31.067	0.992(9504)	0.997(700)	0.978(16999)	non tumor-specific	alt_3prime	yes
REEP4_LS009	chr8:22139061|22139416:-	REEP4	receptor accessory protein 4	protein coding gene	no	ENST00000306306.7;ENST00000523293.2;ENST00000518664.5;ENST00000306306.7;ENST00000523293.2;ENST00000518664.5	72.499	27.102	13.996	0.994(9522)	0.996(699)	0.974(16929)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
F5_LS023	chr1:169559296|169560554:-	F5	coagulation factor V	protein coding gene	no	ENST00000367797.7;ENST00000367796.3	7.731	4.548	1.269	0.276(2645)	0.369(259)	0.314(5455)	non tumor-specific	nAS	yes
BANK1_LS003	chr4:101420097|101422633:+	BANK1	B cell scaffold protein with ankyrin repeats 1	protein coding gene	no	ENST00000502990.5;ENST00000504592.5	0.838	0.072	0.692	0.036(343)	0.003(2)	0.004(71)	non tumor-specific	exon_skip	yes
C16orf58_LS011	chr16:31493787|31493866:-	C16orf58	RUS family member 1	protein coding gene	no	ENST00000327237.6;ENST00000430477.6;ENST00000567994.5;ENST00000567673.5;ENST00000565128.5	94.790	55.574	76.981	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DPP9_LS0011	chr19:4676656|4679397:-	DPP9	dipeptidyl peptidase 9	protein coding gene	no	.	21.963	1.046	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LSAMP_LS002	chr3:115810414|115816614:-	LSAMP	limbic system associated membrane protein	protein coding gene	yes	ENST00000333617.8	2.666	1.186	2.430	0.188(1806)	0.181(127)	0.354(6153)	non tumor-specific	exon_skip	yes
USP1_LS005	chr1:62437400|62439989:+	USP1	ubiquitin specific peptidase 1	protein coding gene	no	.;.	1.558	0.337	0.000	0.006(62)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AL353801.1_LS001	chr10:44937675|44955469:+	AL353801.1	-	lncRNA gene	no	ENST00000425541.2	0.144	0.037	0.543	0.033(316)	0.165(116)	0(1)	non tumor-specific	nAS	yes
UN_INF2_LS0013	chr14:104701756|104703295:+	INF2	inverted formin 2	protein coding gene	no	.	3.630	0.314	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
REXO4_LS001	chr9:133407072|133407807:-	REXO4	REX4 homolog, 3'-5' exonuclease	protein coding gene	no	ENST00000371935.6;ENST00000371942.7;ENST00000454825.1	66.674	28.910	35.095	0.959(9186)	0.974(684)	0.979(17017)	non tumor-specific	alt_5prime	yes
UN_LRRC47_LS0031	chr1:3783841|3783996:-	LRRC47	leucine rich repeat containing 47	protein coding gene	no	.	2.197	0.459	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_HEATR1_UP_LS0002	chr1:236975905|236978753:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	.	3.365	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9_LS0007	chr5:39285233|39287864:-	C9	complement C9	protein coding gene	no	.	2.731	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PCK1_UP_LS0019	chr20:57546376|57548155:+	PCK1	phosphoenolpyruvate carboxykinase 1	protein coding gene	no	.	1.172	0.894	0.000	0.002(16)	0.011(8)	0(0)	non tumor-specific	nAS	no
CRYM_LS005	chr16:21261338|21262037:-	CRYM	crystallin mu	protein coding gene	no	ENST00000574448.5;ENST00000570401.5;ENST00000543948.5;ENST00000219599.7;ENST00000572113.1;ENST00000576703.5	21.360	56.219	5.763	0.813(7785)	0.923(648)	0.84(14609)	non tumor-specific	alt_3prime;intron_retention	yes
UN_SBF1_LS0022	chr22:50447609|50447739:-	SBF1	SET binding factor 1	protein coding gene	no	.	1.717	0.714	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
NFATC3_LS025	chr16:68214432|68226350:+	NFATC3	nuclear factor of activated T cells 3	protein coding gene	no	ENST00000563319.5;ENST00000566301.5;ENST00000329524.8;ENST00000562926.5;ENST00000563796.5;ENST00000563288.5;ENST00000535127.2	4.291	3.140	4.710	0.81(7761)	0.882(619)	0.944(16400)	non tumor-specific	exon_skip;mutex_exons	yes
UN_HDAC2_LS0035	chr6:113968437|113968634:-	HDAC2	histone deacetylase 2	protein coding gene	no	.	0.551	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AC010210.1_LS0008	chr3:131357329|131357355:-	AC010210.1	-	lncRNA gene	no	.	2.689	0.166	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
PIGQ_LS042	chr16:580972|582484:+	PIGQ	phosphatidylinositol glycan anchor biosynthesis class Q	protein coding gene	no	.;.	3.050	0.277	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RN7SL201P_UP_LS0024	chr2:81548747|81579532:+	RN7SL201P	RNA, 7SL, cytoplasmic 201, pseudogene	small non-coding RNA gene	no	.	2.293	0.071	0.000	0.023(216)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLEC4M_LS010	chr19:7766069|7766656:+	CLEC4M	C-type lectin domain family 4 member M	protein coding gene	no	ENST00000596707.5	0.166	0.178	0.645	0(3)	0.009(6)	0.002(35)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AC025034.1_UP_LS0010	chr12:89543333|89551540:+	AC025034.1	-	lncRNA gene	no	.	5.786	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GGH_LS0007	chr8:63026320|63027181:-	GGH	gamma-glutamyl hydrolase	protein coding gene	no	.	6.606	0.320	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC009226.1_LS0019	chr2:207340250|207343280:+	AC009226.1	-	lncRNA gene	no	.	1.711	0.020	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
ACP2_LS025	chr11:47248133|47248676:-	ACP2	acid phosphatase 2, lysosomal	protein coding gene	no	ENST00000256997.7;ENST00000529444.5;ENST00000534448.5;ENST00000531004.5;ENST00000531547.5;ENST00000529663.5;ENST00000530453.4;ENST00000444355.5;ENST00000529788.2	33.584	23.843	18.124	0.984(9425)	0.99(695)	0.978(16999)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNPS1_LS0008	chr16:2253519|2253620:+	RNPS1	RNA binding protein with serine rich domain 1	protein coding gene	no	.	9.558	1.244	0.000	0.037(351)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_AVPR1B_UP_LS0001	chr1:206126406|206130012:-	AVPR1B	arginine vasopressin receptor 1B	protein coding gene	no	.	4.346	0.901	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC078950.1_LS001	chr12:11430464|11431482:-	AC078950.1	-	lncRNA gene	no	ENST00000539178.5;ENST00000540635.1	4.183	0.712	2.051	0.016(156)	0.011(8)	0.092(1602)	non tumor-specific	nAS	yes
UN_NFASC_LS0002	chr1:204828782|204870604:+	NFASC	neurofascin	protein coding gene	no	.	1.670	0.095	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LIPA_LS028	chr10:89338288|89342492:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	ENST00000489359.1	0.465	0.073	0.986	0.054(513)	0.011(8)	0.052(899)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TMEM234_LS012	chr1:32216517|32216889:-	TMEM234	transmembrane protein 234	protein coding gene	no	ENST00000491434.5;ENST00000489170.5;ENST00000461402.5;ENST00000483001.5;ENST00000344461.7	0.659	0.564	10.022	0.959(9190)	0.967(679)	0.971(16874)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_GNGT1_LS0008	chr7:93591771|93807204:+	GNGT1	G protein subunit gamma transducin 1	protein coding gene	no	.	6.373	0.694	0.000	0.362(3465)	0.105(74)	0(0)	non tumor-specific	exon_skip	no
SEMA6D_LS014	chr15:47760415|47760978:+	SEMA6D	semaphorin 6D	protein coding gene	no	ENST00000558014.5;ENST00000561133.5;ENST00000536845.6;ENST00000558816.5;ENST00000389425.7;ENST00000355997.7;ENST00000316364.9;ENST00000354744.8;ENST00000358066.8;ENST00000389428.7;ENST00000559196.1	3.046	5.043	2.814	0.412(3948)	0.732(514)	0.779(13536)	non tumor-specific	nAS	yes
UN_CPSF2_LS0013	chr14:92155327|92156479:+	CPSF2	cleavage and polyadenylation specific factor 2	protein coding gene	no	.	10.167	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	alt_5prime	no
KIF2A_LS008	chr5:62348167|62350066:+	KIF2A	kinesin family member 2A	protein coding gene	no	ENST00000401507.7;ENST00000381103.6;ENST00000514082.5;ENST00000407818.7;ENST00000504883.1;ENST00000512541.5;ENST00000506857.5	17.336	9.619	11.255	0.956(9163)	0.96(674)	0.975(16949)	non tumor-specific	alt_5prime	yes
UN_ZNF107_LS0020	chr7:64681222|64684087:+	ZNF107	zinc finger protein 107	protein coding gene	no	.	1.307	0.094	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01778_LS013	chr1:30829882|30833506:+	LINC01778	long intergenic non-protein coding RNA 1778	lncRNA gene	no	ENST00000430320.3;ENST00000635357.1;ENST00000635044.1;ENST00000635288.1;ENST00000634319.1;ENST00000635009.1;ENST00000634587.1;ENST00000634980.1	2.462	2.318	1.453	0.131(1253)	0.192(135)	0.502(8718)	non tumor-specific	nAS	yes
NIPAL3_LS003	chr1:24419613|24440172:+	NIPAL3	NIPA like domain containing 3	protein coding gene	no	.;.	2.522	2.267	0.000	0.035(340)	0.053(37)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MBL2_UP_LS0002	chr10:52782538|52784116:-	MBL2	mannose binding lectin 2	protein coding gene	no	.	4.878	0.753	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
JAM3_LS002	chr11:134069159|134139851:+	JAM3	junctional adhesion molecule 3	protein coding gene	no	ENST00000299106.8;ENST00000441717.3;ENST00000531302.5	5.622	6.150	20.773	0.824(7890)	0.939(659)	0.954(16577)	non tumor-specific	nAS	yes
TOM1_LS001	chr22:35299378|35317877:+	TOM1	target of myb1 membrane trafficking protein	protein coding gene	no	ENST00000608749.5;ENST00000447733.5	0.001	0.011	0.862	0.608(5824)	0.697(489)	0.035(612)	non tumor-specific	nAS	yes
ZNF211_LS011	chr19:57633436|57633786:+	ZNF211	zinc finger protein 211	protein coding gene	no	ENST00000540556.5	0.049	0.193	0.988	0.407(3899)	0.513(360)	0.548(9527)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CENPBD1P1_LS0002	chr19:58573565|58581245:+	CENPBD1P1	CENPB DNA-binding domains containing 1 pseudogene 1	pseudogene	no	.	2.210	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
CNKSR1_LS004	chr1:26180896|26181857:+	CNKSR1	connector enhancer of kinase suppressor of Ras 1	protein coding gene	no	ENST00000361530.10;ENST00000481077.6;ENST00000480348.6;ENST00000374253.9;ENST00000525687.5;ENST00000482227.5;ENST00000531191.5	11.849	8.691	4.969	0.722(6915)	0.879(617)	0.872(15156)	non tumor-specific	alt_5prime;intron_retention	yes
PEAR1_LS020	chr1:156909036|156909751:+	PEAR1	platelet endothelial aggregation receptor 1	protein coding gene	no	ENST00000338302.7;ENST00000292357.7;ENST00000469390.5	4.109	3.613	12.387	0.538(5151)	0.816(573)	0.944(16400)	non tumor-specific	alt_3prime	yes
DCTN3_LS007	chr9:34614198|34614710:-	DCTN3	dynactin subunit 3	protein coding gene	no	ENST00000341694.6	1.092	1.661	1.266	0.937(8975)	0.976(685)	0.704(12233)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RPL27A_LS001	chr11:8682816|8683202:+	RPL27A	ribosomal protein L27a	protein coding gene	no	ENST00000314138.10;ENST00000529227.5;ENST00000530585.5;ENST00000531978.5;ENST00000524496.5;ENST00000534599.5;ENST00000532359.5	300.618	139.221	868.777	0.973(9325)	0.969(680)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MOK_LS027	chr14:102232708|102233688:-	MOK	MOK protein kinase	protein coding gene	no	ENST00000559138.5;ENST00000559838.5;ENST00000517966.5;ENST00000523485.5;ENST00000519569.5;ENST00000524370.5;ENST00000522874.5;ENST00000361847.6;ENST00000519058.5;ENST00000524214.5;ENST00000522534.5;ENST00000522537.5	11.424	4.965	8.682	0.901(8635)	0.89(625)	0.949(16502)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DOCK5_LS052	chr8:25390287|25391896:+	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	ENST00000276440.11;ENST00000467709.6	11.914	6.755	10.291	0.802(7687)	0.915(642)	0.959(16664)	non tumor-specific	exon_skip	yes
ZNF692_LS021	chr1:248855946|248856373:-	ZNF692	zinc finger protein 692	protein coding gene	no	ENST00000477070.6;ENST00000412341.6;ENST00000496411.5	0.426	0.484	6.585	0.851(8156)	0.707(496)	0.957(16643)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FRMD4B_LS0033	chr3:69224690|69237097:-	FRMD4B	FERM domain containing 4B	protein coding gene	no	.	3.143	1.939	0.000	0.123(1174)	0.155(109)	0(0)	non tumor-specific	nAS	no
SPG7_LS051	chr16:89548113|89548980:+	SPG7	SPG7 matrix AAA peptidase subunit, paraplegin	protein coding gene	no	ENST00000643350.1	0.057	0.379	1.061	0.155(1483)	0.083(58)	0.49(8509)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
CBLB_LS019	chr3:105704173|105720047:-	CBLB	Cbl proto-oncogene B	protein coding gene	yes	ENST00000394030.8;ENST00000645759.1;ENST00000264122.8;ENST00000645425.1;ENST00000646499.1;ENST00000646825.1;ENST00000643322.1;ENST00000403724.5;ENST00000405772.5	19.633	11.656	16.569	0.957(9170)	0.977(686)	0.968(16823)	non tumor-specific	exon_skip	yes
UN_GCC2_LS0016	chr2:108484311|108485647:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	.	4.141	0.337	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC107214.1_UP_LS0005	chr4:183559458|183561836:-	AC107214.1	-	lncRNA gene	no	.	2.466	0.501	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
SHKBP1_LS043	chr19:40590422|40590730:+	SHKBP1	SH3KBP1 binding protein 1	protein coding gene	no	ENST00000291842.9;ENST00000600733.5;ENST00000594973.5;ENST00000598201.5;ENST00000602011.5;ENST00000599833.1;ENST00000602239.1	56.161	26.645	52.916	0.994(9527)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
BX276092.9_LS003	chrX:71670334|71670612:+	BX276092.9	-	protein coding gene	no	ENST00000636797.2;ENST00000636096.2	13.115	0.377	1.111	0.043(415)	0.006(4)	0.071(1235)	non tumor-specific	nAS	yes
SYNE2_LS048	chr14:64031357|64048000:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000344113.8;ENST00000557005.1	3.917	2.761	3.936	0.392(3759)	0.597(419)	0.801(13930)	non tumor-specific	exon_skip	yes
UN_HLA-DRB1_LS0017	chr6:32580794|32581607:+	HLA-DRB1	major histocompatibility complex, class II, DR beta 1	protein coding gene	no	.	86.485	9.332	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZPLD1_UP_LS0013	chr3:102087878|102094045:+	ZPLD1	zona pellucida like domain containing 1	protein coding gene	no	.	3.014	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SGCD_UP_LS0009	chr5:155854624|155858767:+	SGCD	sarcoglycan delta	protein coding gene	no	.	4.153	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SLC4A9_LS019	chr5:140366022|140366151:+	SLC4A9	solute carrier family 4 member 9	protein coding gene	no	ENST00000506757.6;ENST00000432095.6;ENST00000507527.1;ENST00000514849.1	0.952	2.344	0.918	0.031(296)	0.189(133)	0.202(3507)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GPBP1_LS019	chr5:57236032|57246300:+	GPBP1	GC-rich promoter binding protein 1	protein coding gene	no	ENST00000514387.6;ENST00000506184.6;ENST00000511209.5;ENST00000264779.6;ENST00000514387.6;ENST00000506184.6;ENST00000511209.5;ENST00000264779.6	56.170	36.689	57.280	0.993(9515)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GPATCH11_LS0001	chr2:37084570|37088378:+	GPATCH11	G-patch domain containing 11	protein coding gene	no	.	0.908	0.075	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRPM3_LS033	chr9:70864511|70868986:-	TRPM3	transient receptor potential cation channel subfamily M member 3	protein coding gene	no	ENST00000377105.5;ENST00000360823.6;ENST00000377101.5;ENST00000396283.5;ENST00000361823.9	2.941	1.331	1.247	0.122(1173)	0.269(189)	0.329(5719)	non tumor-specific	nAS	yes
MAB21L3_LS005	chr1:116124357|116127466:+	MAB21L3	mab-21 like 3	protein coding gene	no	ENST00000369500.3;ENST00000464946.1	3.588	3.206	1.615	0.17(1624)	0.303(213)	0.26(4511)	non tumor-specific	nAS	yes
UN_ARL2-SNX15_LS0026	chr11:65020324|65020419:+	ARL2-SNX15	ARL2-SNX15 readthrough (NMD candidate)	protein coding gene	no	.	3.368	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0905	chr21:8441782|8443904:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	202.123	73.019	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP19_UP_LS0008	chr1:228505770|228508701:+	RNA5SP19	RNA, 5S ribosomal pseudogene 19	no	no	.	3.620	0.447	0.000	0.087(830)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_RF00100_UP_LS0069	chr6:52882805|52893621:+	RF00100	-	small non-coding RNA gene	no	.	4.656	0.492	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS1224	chr20:29100464|29481408:+	RF00019	-	small non-coding RNA gene	no	.	1.287	0.850	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM208B_LS0047	chr10:5761451|5762532:+	FAM208B	transcription activation suppressor family member 2	protein coding gene	no	.	20.193	3.635	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_SGCD_LS0050	chr5:156740739|156742636:-	SGCD	sarcoglycan delta	protein coding gene	no	.	2.156	0.134	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
NPIPB5_LS037	chr16:22517102|22519138:+	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	ENST00000540704.1;ENST00000540704.1	0.961	0.585	0.683	0.835(8002)	0.793(557)	0.074(1293)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ARPC4_LS005	chr3:9797777|9799879:+	ARPC4	actin related protein 2/3 complex subunit 4	protein coding gene	no	ENST00000417500.5	0.390	0.971	3.413	0.84(8048)	0.885(621)	0.93(16167)	non tumor-specific	exon_skip	yes
UN_NPIPB5_LS0239	chr16:22534993|22535189:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	10.053	0.098	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RDX_LS0025	chr11:110060116|110061254:+	RDX	radixin	protein coding gene	no	.	2.386	0.164	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDON_LS002	chr11:125961105|125961724:-	CDON	cell adhesion associated, oncogene regulated	protein coding gene	yes	ENST00000531738.5;ENST00000263577.11	8.140	7.089	5.113	0.696(6671)	0.85(597)	0.84(14604)	non tumor-specific	alt_5prime	yes
CPE_LS005	chr4:165418288|165464390:+	CPE	carboxypeptidase E	protein coding gene	no	ENST00000511992.1	0.002	0.012	0.946	0.409(3923)	0.509(357)	0.033(577)	non tumor-specific	nAS	yes
UN_LINC01787_UP_LS0009	chr1:96448124|96448335:-	LINC01787	long intergenic non-protein coding RNA 1787	lncRNA gene	no	.	57.620	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC52A3_LS0020	chr20:765825|768312:-	SLC52A3	solute carrier family 52 member 3	protein coding gene	no	.	2.380	0.177	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AGPAT3_LS008	chr21:43916421|43959634:+	AGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein coding gene	no	ENST00000445582.5	0.041	0.015	0.608	0.586(5612)	0.661(464)	0.007(122)	non tumor-specific	nAS	yes
UN_AC243732.1_UP_LS0003	chr17:36933396|36937745:-	AC243732.1	-	pseudogene	no	.	1.013	0.000	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PATJ_LS0030	chr1:61864630|61875243:+	PATJ	PATJ crumbs cell polarity complex component	protein coding gene	no	.	2.898	1.484	0.000	0.018(174)	0.02(14)	0(0)	non tumor-specific	alt_5prime	no
UN_AC010326.1_UP_LS0004	chr19:57974203|57980162:-	AC010326.1	-	pseudogene	no	.	3.036	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
TSPAN1_LS017	chr1:46184668|46184785:+	TSPAN1	tetraspanin 1	protein coding gene	yes	ENST00000372003.5;ENST00000475163.5;ENST00000482143.5;ENST00000464786.5;ENST00000472170.1	124.660	276.726	4.797	0.867(8309)	0.986(692)	0.876(15227)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF12_LS0040	chr7:6697811|6704214:-	ZNF12	zinc finger protein 12	protein coding gene	no	.	4.428	0.587	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
FLJ42351_LS001	chr2:112641982|112642083:-	FLJ42351	-	lncRNA gene	no	ENST00000457336.1	1.859	1.046	3.349	0.409(3915)	0.289(203)	0.819(14237)	non tumor-specific	nAS	yes
SSPN_LS001	chr12:26122152|26224293:+	SSPN	sarcospan	protein coding gene	no	ENST00000538142.5	0.405	0.299	0.722	0.508(4866)	0.654(459)	0.215(3737)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RFX5_LS0009	chr1:151342763|151342857:+	RFX5	regulatory factor X5	protein coding gene	no	.	1.180	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SRRM2_LS019	chr16:2760499|2761561:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	ENST00000301740.12;ENST00000576924.5;ENST00000575009.5;ENST00000630499.2;ENST00000571378.5;ENST00000573498.5;ENST00000572278.1;ENST00000572952.1	92.686	55.440	142.054	0.985(9433)	0.991(696)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_KIAA0556_LS0074	chr16:27751924|27761413:+	KIAA0556	katanin interacting protein	protein coding gene	no	.	1.727	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC129492.6_UP_LS0002	chr17:8033811|8039386:+	AC129492.6	-	pseudogene	no	.	0.945	1.001	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLEKHH1_LS027	chr14:67578631|67579134:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5;ENST00000561370.5	8.973	9.039	8.014	0.722(6918)	0.717(503)	0.877(15246)	non tumor-specific	nAS	yes
UN_GCNT3_LS0034	chr15:59621162|59621877:+	GCNT3	glucosaminyl (N-acetyl) transferase 3, mucin type	protein coding gene	no	.	4.753	2.121	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DPY19L1P1_LS0027	chr7:32656044|32668831:-	DPY19L1P1	DPY19L1 pseudogene 1	pseudogene	no	.	2.473	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC2A4_LS006	chr17:7283862|7284217:+	SLC2A4	solute carrier family 2 member 4	protein coding gene	no	ENST00000570783.5	0.392	0.242	1.330	0.164(1575)	0.44(309)	0.31(5384)	non tumor-specific	exon_skip	yes
UN_TENM2_LS0011	chr5:167574026|167721352:+	TENM2	teneurin transmembrane protein 2	protein coding gene	no	.	16.993	0.087	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_NR3C1_LS0038	chr5:143400852|143404790:-	NR3C1	nuclear receptor subfamily 3 group C member 1	protein coding gene	no	.	0.858	0.181	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SAMMSON_LS0024	chr3:70358324|70430283:+	SAMMSON	survival associated mitochondrial melanoma specific oncogenic non-coding RNA	lncRNA gene	no	.	1.342	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DHX35_LS020	chr20:39018899|39021841:+	DHX35	DEAH-box helicase 35	protein coding gene	no	ENST00000373325.6;ENST00000252011.7;ENST00000373323.8;ENST00000484417.5	14.563	7.582	17.877	0.93(8914)	0.977(686)	0.975(16948)	non tumor-specific	exon_skip	yes
LBR_LS001	chr1:225403463|225404404:-	LBR	lamin B receptor	protein coding gene	no	ENST00000272163.8;ENST00000338179.6;ENST00000441022.1	38.679	21.974	27.006	0.971(9304)	0.972(682)	0.979(17010)	non tumor-specific	alt_3prime	yes
UN_IGKV1D-43_UP_LS0008	chr2:90173309|90190577:+	IGKV1D-43	immunoglobulin kappa variable 1D-43	no	no	.	24.277	0.110	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	nAS	no
ELF1_LS010	chr13:40959016|40981983:-	ELF1	elongation factor 1 homolog	protein coding gene	no	ENST00000498824.4;ENST00000239882.6;ENST00000625359.1;ENST00000635415.1	48.227	35.383	31.979	0.959(9187)	0.989(694)	0.975(16944)	non tumor-specific	exon_skip	yes
UN_WDR17_LS0006	chr4:176111304|176111575:+	WDR17	WD repeat domain 17	protein coding gene	no	.	0.555	0.027	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RUFY2_LS0043	chr10:68404844|68405821:-	RUFY2	RUN and FYVE domain containing 2	protein coding gene	no	.	1.030	0.297	0.000	0.01(99)	0.014(10)	0(0)	non tumor-specific	nAS	no
SH3GL1_LS005	chr19:4363878|4364088:-	SH3GL1	SH3 domain containing GRB2 like 1, endophilin A2	protein coding gene	no	ENST00000269886.7;ENST00000598564.5;ENST00000417295.6;ENST00000593591.5;ENST00000598230.5	182.243	97.345	96.694	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
PLA2G4C_LS029	chr19:48105444|48106522:-	PLA2G4C	phospholipase A2 group IVC	protein coding gene	no	ENST00000354276.7;ENST00000599921.5;ENST00000599063.5;ENST00000595487.5;ENST00000595899.5;ENST00000594156.5;ENST00000598813.5;ENST00000596138.1;ENST00000598488.1	6.206	4.582	8.482	0.837(8016)	0.946(664)	0.936(16268)	non tumor-specific	alt_3prime	yes
PHLPP1_LS022	chr18:62975625|62978262:+	PHLPP1	PH domain and leucine rich repeat protein phosphatase 1	protein coding gene	yes	ENST00000262719.9	35.155	22.690	13.045	0.965(9245)	0.983(690)	0.975(16953)	non tumor-specific	nAS	yes
PLD1_LS039	chr3:171789535|171810399:-	PLD1	protein kinase C substrate 80K-H	protein coding gene	yes	ENST00000460926.1	0.319	0.181	1.332	0.46(4407)	0.405(284)	0.479(8334)	non tumor-specific	nAS	yes
UN_LTBP2_LS0114	chr14:74603705|74610957:-	LTBP2	latent transforming growth factor beta binding protein 3	protein coding gene	no	.	1.744	0.169	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_UP_LS0214	chr14:106329652|106349520:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	43.509	16.704	0.000	0.031(301)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_RERG_LS0025	chr12:15163829|15168628:+	RERG	RAS like estrogen regulated growth inhibitor	protein coding gene	no	.	4.494	0.939	0.000	0.012(113)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_AL390728.5_LS0002	chr1:247210743|247211527:-	AL390728.5	-	lncRNA gene	no	.	0.926	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01435_LS006	chr10:107871753|108040361:-	LINC01435	long intergenic non-protein coding RNA 1435	lncRNA gene	no	ENST00000425050.5	0.010	0.000	0.757	0(1)	0(0)	0(6)	non tumor-specific	nAS	yes
TMEM144_LS001	chr4:158201698|158203620:+	TMEM144	transmembrane protein 144	protein coding gene	no	ENST00000511038.5	0.398	0.089	0.646	0.001(8)	0.003(2)	0.013(226)	non tumor-specific	exon_skip	yes
IKBKE_LS016	chr1:206478339|206478943:+	IKBKE	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein coding gene	yes	ENST00000578328.6;ENST00000584998.5;ENST00000581977.6	15.936	6.983	4.405	0.922(8838)	0.873(613)	0.887(15412)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SERF1B_LS0013	chr5:70041631|70041814:+	SERF1B	small EDRK-rich factor 1B	protein coding gene	no	.	1.120	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_LINC00923_LS0024	chr15:97790980|97873953:-	LINC00923	long intergenic non-protein coding RNA 923	lncRNA gene	no	.	1.320	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
NFATC1_LS001	chr18:79396351|79410403:+	NFATC1	nuclear factor of activated T cells 1	protein coding gene	no	ENST00000253506.9;ENST00000591814.5;ENST00000587635.5;ENST00000542384.5;ENST00000427363.6	0.637	0.859	3.350	0.667(6392)	0.774(543)	0.773(13441)	non tumor-specific	exon_skip	yes
UN_AP000676.1_UP_LS0003	chr11:87954906|88149675:-	AP000676.1	-	pseudogene	no	.	3.523	0.356	0.000	0.008(72)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_KIFC2_LS0019	chr8:144468406|144468584:+	KIFC2	kinesin family member C2	protein coding gene	no	.	8.342	0.036	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LAMA3_LS0020	chr18:23777623|23778590:+	LAMA3	laminin subunit alpha 4	protein coding gene	no	.	1.222	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PROX1-AS1_LS021	chr1:213894743|213895394:-	PROX1-AS1	PROX1 antisense RNA 1	lncRNA gene	no	ENST00000433082.6;ENST00000600591.5;ENST00000593620.5;ENST00000601907.5;ENST00000598105.5;ENST00000601744.5;ENST00000608936.5;ENST00000626372.2;ENST00000629383.2;ENST00000629207.2;ENST00000626670.2;ENST00000630124.2;ENST00000627855.2;ENST00000630538.2;ENST00000630180.2;ENST00000629743.2;ENST00000625722.2;ENST00000630223.2;ENST00000626228.2;ENST00000627331.2;ENST00000627723.2;ENST00000413560.5;ENST00000613050.4;ENST00000615085.3	0.249	0.176	1.463	0.224(2147)	0.349(245)	0.305(5307)	non tumor-specific	nAS	yes
UN_MRE11_LS0030	chr11:94471759|94472469:-	MRE11	MRE11 homolog, double strand break repair nuclease	protein coding gene	no	.	2.407	0.052	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
NBR1_LS019	chr17:43195039|43196481:+	NBR1	NBR1 autophagy cargo receptor	protein coding gene	no	ENST00000341165.10;ENST00000542611.5;ENST00000590996.5;ENST00000589872.1	102.369	88.572	81.007	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
SYNPR_LS026	chr3:63610553|63615224:+	SYNPR	synaptoporin	protein coding gene	no	ENST00000479198.5	0.769	0.005	1.593	0.019(180)	0.007(5)	0.081(1405)	non tumor-specific	exon_skip	yes
TMEM50B_LS015	chr21:33456097|33460413:-	TMEM50B	transmembrane protein 50B	protein coding gene	no	ENST00000442441.5	1.299	1.978	4.428	0.716(6857)	0.819(575)	0.915(15904)	non tumor-specific	alt_3prime;exon_skip	yes
GALC_LS028	chr14:87988523|87992304:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000544807.6;ENST00000556879.5	0.114	0.116	0.770	0.387(3706)	0.594(417)	0.209(3637)	non tumor-specific	exon_skip	yes
ZNF143_LS004	chr11:9461076|9471306:+	ZNF143	zinc finger protein 143	protein coding gene	no	ENST00000532577.5;ENST00000438144.6;ENST00000526657.5	0.071	0.051	1.026	0.6(5748)	0.657(461)	0.576(10006)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LURAP1_LS0003	chr1:46203816|46219699:+	LURAP1	leucine rich adaptor protein 1	protein coding gene	no	.	1.060	0.063	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
HLA-A_LS020	chr6:29944397|29945451:+	HLA-A	major histocompatibility complex, class I, A	protein coding gene	no	ENST00000376802.2	3.429	2.043	0.745	0.962(9214)	0.954(670)	0.253(4404)	non tumor-specific	exon_skip;mutex_exons	yes
EFR3B_LS011	chr2:25131503|25131750:+	EFR3B	EFR3 homolog B	protein coding gene	no	ENST00000401432.7;ENST00000403714.7;ENST00000402191.5;ENST00000405108.5;ENST00000264719.5	4.283	3.682	1.822	0.309(2957)	0.316(222)	0.557(9687)	non tumor-specific	nAS	yes
ITPR1_LS039	chr3:4697272|4699813:+	ITPR1	inositol 1,4,5-trisphosphate receptor type 1	protein coding gene	no	ENST00000357086.10;ENST00000302640.12;ENST00000354582.11;ENST00000456211.8;ENST00000648266.1;ENST00000650294.1;ENST00000649015.1;ENST00000648309.1;ENST00000443694.4;ENST00000648038.1;ENST00000647717.1;ENST00000648431.1;ENST00000648212.1;ENST00000647624.1;ENST00000648016.1;ENST00000647673.1;ENST00000647708.1	7.359	12.766	7.947	0.662(6343)	0.877(616)	0.922(16025)	non tumor-specific	exon_skip	yes
SVIL_LS032	chr10:29508389|29512735:-	SVIL	supervillin	protein coding gene	no	ENST00000632315.1;ENST00000464984.1	1.767	14.890	7.131	0.455(4356)	0.821(576)	0.757(13163)	non tumor-specific	exon_skip	yes
UN_WIZP1_UP_LS0001	chr11:23163602|23165190:+	WIZP1	WIZ pseudogene 1	pseudogene	no	.	2.533	0.087	0.000	0.008(72)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SEPT14P24_UP_LS0081	chr7:56368698|56368795:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	1.513	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC010335.1_UP_LS0005	chr19:18417287|18427351:+	AC010335.1	-	lncRNA gene	no	.	0.919	0.081	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
PLSCR3_LS004	chr17:7392880|7393144:-	PLSCR3	phospholipid scramblase 3	protein coding gene	no	ENST00000576362.5	0.615	0.546	3.077	0.912(8734)	0.905(635)	0.897(15588)	non tumor-specific	alt_3prime	yes
NRG4_LS028	chr15:76052983|76059655:-	NRG4	neuregulin 4	protein coding gene	no	ENST00000565661.5	0.225	0.192	1.133	0.009(87)	0.024(17)	0.08(1392)	non tumor-specific	exon_skip	yes
TNIK_LS035	chr3:171188832|171190697:-	TNIK	TRAF2 and NCK interacting kinase	protein coding gene	no	ENST00000436636.6;ENST00000341852.10;ENST00000284483.12;ENST00000475336.5;ENST00000357327.9;ENST00000460047.5;ENST00000488470.5;ENST00000470834.5;ENST00000468757.1	7.762	5.051	4.171	0.634(6079)	0.799(561)	0.896(15575)	non tumor-specific	nAS	yes
PXDN_LS017	chr2:1665074|1666214:-	PXDN	peroxidasin	protein coding gene	no	ENST00000252804.8;ENST00000478155.5;ENST00000433670.5;ENST00000467191.5	26.140	10.942	8.174	0.872(8352)	0.937(658)	0.872(15151)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_OSTN-AS1_UP_LS0002	chr3:191248779|191275252:-	OSTN-AS1	OSTN antisense RNA 1	lncRNA gene	no	.	3.452	0.924	0.000	0.015(141)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_AL360181.1_UP_LS0008	chr10:133353800|133354553:-	AL360181.1	-	lncRNA gene	no	.	0.432	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA0556_LS022	chr16:27721695|27749584:+	KIAA0556	katanin interacting protein	protein coding gene	no	ENST00000573850.1	0.424	0.215	0.788	0.118(1128)	0.148(104)	0.355(6179)	non tumor-specific	exon_skip	yes
TMTC2_LS002	chr12:82687669|82895818:+	TMTC2	transmembrane O-mannosyltransferase targeting cadherins 2	protein coding gene	no	ENST00000546590.2	0.092	0.151	1.027	0.502(4811)	0.644(452)	0.486(8446)	non tumor-specific	exon_skip	yes
UN_CLTC_LS0011	chr17:59651316|59655859:+	CLTC	clathrin heavy chain	protein coding gene	no	.	32.306	3.263	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC011294.1_UP_LS0006	chr7:46783873|46785479:-	AC011294.1	-	lncRNA gene	no	.	2.135	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF217_UP_LS0010	chr6:124894586|124897185:+	RNF217	ring finger protein 217	protein coding gene	no	.	6.275	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
SNAP47_LS014	chr1:227748233|227758995:+	SNAP47	synaptosome associated protein 47	protein coding gene	no	ENST00000366759.8;ENST00000315781.9;ENST00000426344.5;ENST00000617596.4;ENST00000606873.1;ENST00000478768.2	49.437	31.625	25.322	0.996(9547)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
PLA2G2A_LS022	chr1:19979690|19980362:-	PLA2G2A	phospholipase A2 group IIA	protein coding gene	yes	ENST00000375111.7;ENST00000482011.1;ENST00000375111.7;ENST00000482011.1;ENST00000375111.7;ENST00000482011.1	0.578	1.202	0.840	0.107(1029)	0.158(111)	0.063(1094)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF680_LS006	chr7:64544432|64560946:-	ZNF680	zinc finger protein 680	protein coding gene	no	ENST00000473601.1	0.135	0.077	0.770	0.337(3227)	0.362(254)	0.2(3475)	non tumor-specific	alt_5prime;exon_skip	yes
UN_USF2_UP_LS0001	chr19:35268588|35268850:+	USF2	upstream transcription factor 2, c-fos interacting	protein coding gene	no	.	0.643	0.704	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
OTUD4_LS013	chr4:145150905|145152541:-	OTUD4	OTU deubiquitinase 4	protein coding gene	no	ENST00000455611.6;ENST00000454497.6;ENST00000447906.7;ENST00000514973.5	6.770	5.361	9.329	0.801(7674)	0.934(656)	0.947(16455)	non tumor-specific	exon_skip	yes
UN_EHD3_LS0009	chr2:31249468|31254837:+	EHD3	EH domain containing 3	protein coding gene	yes	.	1.187	0.859	0.000	0.013(123)	0.03(21)	0(0)	non tumor-specific	exon_skip	no
UN_IGHG2_LS0040	chr14:105643527|105643637:+	IGHG2	immunoglobulin heavy constant gamma 2 (G2m marker)	no	no	.	46.574	0.003	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL021408.2_UP_LS0005	chr6:132401466|132401905:-	AL021408.2	-	lncRNA gene	no	.	2.820	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COX19_LS0064	chr7:945831|950119:+	COX19	cytochrome c oxidase assembly factor COX19	protein coding gene	no	.	3.124	1.177	0.000	0.04(380)	0.068(48)	0(0)	non tumor-specific	nAS	no
MUC20-OT1_LS076	chr3:195708841|195712098:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	ENST00000630387.2	0.978	0.003	0.718	0.027(257)	0.02(14)	0.017(289)	non tumor-specific	nAS	yes
LINC00479_LS009	chr21:41715283|41715742:-	LINC00479	long intergenic non-protein coding RNA 479	lncRNA gene	no	ENST00000412102.5;ENST00000586552.5;ENST00000589300.1	0.579	0.063	0.698	0.004(42)	0.003(2)	0.037(640)	non tumor-specific	nAS	yes
UN_HIST1H1C_LS0014	chr6:26056011|26056072:-	HIST1H1C	H1.2 linker histone, cluster member	protein coding gene	no	.	232.869	6.058	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TUBB8P5_UP_LS0011	chr12:38157704|38166764:+	TUBB8P5	tubulin beta 8 class VIII pseudogene 5	pseudogene	no	.	3.101	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
VRK2_LS005	chr2:58025770|58028298:+	VRK2	VRK serine/threonine kinase 2	protein coding gene	no	ENST00000463222.1	0.357	1.629	1.015	0.002(15)	0.001(1)	0.008(139)	non tumor-specific	nAS	yes
UN_LINC00535_LS0005	chr8:93226609|93259520:+	LINC00535	long intergenic non-protein coding RNA 535	lncRNA gene	no	.	2.565	1.056	0.000	0.028(265)	0.044(31)	0(0)	non tumor-specific	nAS	no
VPS51_LS006	chr11:65096811|65096998:+	VPS51	VPS51 subunit of GARP complex	protein coding gene	no	ENST00000534557.1	0.002	0.032	0.611	0.194(1862)	0.174(122)	0.039(684)	non tumor-specific	nAS	yes
GGA1_LS035	chr22:37620361|37620813:+	GGA1	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein coding gene	no	ENST00000343632.8;ENST00000381756.9;ENST00000429218.5;ENST00000325180.12;ENST00000449944.5;ENST00000453208.5;ENST00000406772.5;ENST00000413251.5;ENST00000423024.1	34.801	21.208	49.943	0.99(9483)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime	yes
ZNF28_LS006	chr19:52801702|52817944:-	ZNF28	zinc finger protein 28	protein coding gene	no	ENST00000391783.6	0.030	0.023	0.801	0.55(5268)	0.601(422)	0.353(6129)	non tumor-specific	alt_3prime;exon_skip	yes
C5orf64_LS004	chr5:61643400|61686883:+	C5orf64	chromosome 5 open reading frame 64	lncRNA gene	no	ENST00000505642.5	0.617	0.000	1.082	0.011(103)	0(0)	0.062(1072)	non tumor-specific	exon_skip	yes
UN_SH3PXD2A_LS0070	chr10:103661114|103693028:-	SH3PXD2A	SH3 and PX domains 2A	protein coding gene	no	.	7.345	4.598	0.000	0.651(6242)	0.705(495)	0(0)	non tumor-specific	exon_skip	no
UN_TTC28-AS1_LS0015	chr22:27928844|27930694:-	TTC28-AS1	TTC28 antisense RNA 1	lncRNA gene	no	.	3.849	0.191	0.000	0.073(701)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_ALDH16A1_LS0024	chr19:49461435|49461581:-	ALDH16A1	aldehyde dehydrogenase 16 family member A1	protein coding gene	no	.	2.465	0.111	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
NBEA_LS037	chr13:35290450|35309528:+	NBEA	neurobeachin	protein coding gene	no	ENST00000400445.7;ENST00000310336.8;ENST00000629018.2;ENST00000379939.6	4.765	5.571	5.078	0.479(4588)	0.734(515)	0.89(15475)	non tumor-specific	nAS	yes
UN_ZNF587_LS0022	chr19:57856233|57861376:+	ZNF587	zinc finger protein 587	protein coding gene	no	.	2.637	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PTPN23_LS001	chr3:47381180|47396143:+	PTPN23	protein tyrosine phosphatase non-receptor type 23	protein coding gene	yes	ENST00000602307.5;ENST00000265562.4;ENST00000462998.1	10.964	7.336	20.972	0.945(9054)	0.963(676)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_MUC1_LS0575	chr1:155191337|155191459:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	2.714	1.410	0.000	0.256(2450)	0.345(242)	0(0)	non tumor-specific	nAS	no
SMAD9_LS010	chr13:36879875|36920635:-	SMAD9	SMAD family member 9	protein coding gene	no	ENST00000483941.1	0.084	0.029	0.614	0.04(382)	0.081(57)	0.002(40)	non tumor-specific	nAS	yes
UN_H2BFWT_UP_LS0005	chrX:104060849|104061683:-	H2BFWT	H2B.W histone 1	protein coding gene	no	.	4.513	0.339	0.000	0.082(781)	0.026(18)	0(0)	non tumor-specific	nAS	no
LRRC37A3_LS018	chr17:64892600|64894649:-	LRRC37A3	leucine rich repeat containing 37 member A3	protein coding gene	no	ENST00000319651.9;ENST00000584306.5;ENST00000584788.5;ENST00000580464.1	1.070	0.369	0.875	0.777(7440)	0.783(550)	0.288(5003)	non tumor-specific	exon_skip	yes
C12orf50_LS003	chr12:87986053|87986312:-	C12orf50	chromosome 12 open reading frame 50	protein coding gene	no	ENST00000298699.6;ENST00000550553.5;ENST00000551944.1	8.781	0.000	0.721	0.002(16)	0(0)	0.066(1140)	non tumor-specific	nAS	yes
UN_AC068050.1_UP_LS0014	chr9:107752551|107798230:+	AC068050.1	-	pseudogene	no	.	2.390	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SIL1_LS026	chr5:139128052|139196441:-	SIL1	SIL1 nucleotide exchange factor	protein coding gene	no	ENST00000507002.5	0.019	0.012	0.606	0.107(1023)	0.064(45)	0.061(1066)	non tumor-specific	exon_skip;mutex_exons	yes
TESPA1_LS002	chr12:54950390|54962431:-	TESPA1	thymocyte expressed, positive selection associated 1	protein coding gene	no	ENST00000528240.1	0.150	0.058	1.091	0.193(1847)	0.178(125)	0.139(2422)	non tumor-specific	exon_skip	yes
UN_TPI1_LS0006	chr12:6868945|6869311:-	TPI1	triosephosphate isomerase 1	protein coding gene	no	.	4.176	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SF3A2_LS0067	chr19:2247889|2247926:-	SF3A2	splicing factor 3a subunit 2	protein coding gene	no	.	4.994	0.646	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRELID1P2_UP_LS0004	chr6:25703144|25755740:-	PRELID1P2	PRELID1 pseudogene 2	pseudogene	no	.	4.408	0.294	0.000	0.015(146)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CTNNA1_LS0046	chr5:138925407|138930473:+	CTNNA1	catenin alpha 1	protein coding gene	no	.	19.334	1.206	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF385C_LS0049	chr17:42088295|42088425:+	ZNF385C	zinc finger protein 385C	protein coding gene	no	.	4.536	0.782	0.000	0.009(85)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL356800.1_UP_LS0032	chr14:43334250|43370246:-	AL356800.1	-	pseudogene	no	.	3.161	0.051	0.000	0.03(283)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GPM6B_LS0007	chrX:13774219|13776025:+	GPM6B	glycoprotein M6B	protein coding gene	yes	.	1.604	0.304	0.000	0.006(58)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CHCHD6_LS0048	chr3:126914750|126947773:+	CHCHD6	coiled-coil-helix-coiled-coil-helix domain containing 6	protein coding gene	no	.	2.758	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_DTWD2_LS0015	chr5:118875430|118974337:-	DTWD2	DTW domain containing 2	protein coding gene	no	.	3.914	1.780	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS0559	chr11:62521477|62526896:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	6.831	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
CPSF7_LS002	chr11:61404704|61410938:-	CPSF7	cleavage and polyadenylation specific factor 7	protein coding gene	no	ENST00000340437.8;ENST00000394888.8;ENST00000439958.7;ENST00000448745.5	90.328	49.207	82.468	0.984(9431)	0.98(688)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAN_LS0022	chr12:130876120|130876177:-	RAN	RAN, member RAS oncogene family	protein coding gene	no	.	23.289	1.716	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02094_UP_LS0001	chr17:19383320|19411247:+	LINC02094	long intergenic non-protein coding RNA 2094	lncRNA gene	no	.	3.114	0.082	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
MON2_LS035	chr12:62565380|62566014:+	MON2	MON2 homolog, regulator of endosome-to-Golgi trafficking	protein coding gene	no	ENST00000641654.1;ENST00000393630.7;ENST00000546600.5;ENST00000547095.5	9.932	6.061	17.544	0.836(8006)	0.934(656)	0.971(16876)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SPATS2_LS0036	chr12:49490731|49491806:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	.	1.509	0.410	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_HS6ST1_LS0116	chr2:128268870|128289515:-	HS6ST1	heparan sulfate 6-O-sulfotransferase 1	protein coding gene	no	.	1.027	0.196	0.000	0.005(49)	0.007(5)	0(0)	non tumor-specific	nAS	no
STRA6_LS037	chr15:74197423|74197520:-	STRA6	signaling receptor and transporter of retinol STRA6	protein coding gene	yes	ENST00000573391.1	0.169	0.012	0.762	0.028(269)	0.006(4)	0.014(235)	non tumor-specific	alt_5prime;exon_skip	yes
CCNJL_LS020	chr5:160280948|160311858:-	CCNJL	cyclin J like	protein coding gene	no	ENST00000520748.1	0.274	0.175	0.825	0.183(1750)	0.262(184)	0.062(1082)	non tumor-specific	alt_3prime;exon_skip	yes
PPP1R10_LS004	chr6:30603285|30603472:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	ENST00000376511.6	66.597	45.230	40.380	0.992(9504)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_MYO15B_LS0064	chr17:75620357|75620475:+	MYO15B	myosin XVB	protein coding gene	no	.	14.157	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SFPQ_LS0135	chr1:35192932|35193074:+	SFPQ	splicing factor proline and glutamine rich	protein coding gene	yes	.	0.408	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DYRK1A_LS0028	chr21:37468508|37472684:+	DYRK1A	dual specificity tyrosine phosphorylation regulated kinase 1A	protein coding gene	no	.	1.127	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
COG3_LS023	chr13:45525051|45529791:+	COG3	component of oligomeric golgi complex 3	protein coding gene	no	ENST00000349995.9;ENST00000486940.2	23.288	18.040	22.321	0.976(9349)	0.991(696)	0.976(16971)	non tumor-specific	alt_3prime	yes
UN_H19_LS0099	chr11:1996193|1996290:+	H19	H19 imprinted maternally expressed transcript	lncRNA gene	yes	.	14.100	4.299	0.000	0.012(116)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC007969.1_LS0026	chr2:171517470|171517685:+	AC007969.1	-	pseudogene	no	.	5.339	0.766	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
METTL23_LS011	chr17:76727178|76732978:+	METTL23	methyltransferase like 23	protein coding gene	no	ENST00000588302.5;ENST00000590964.5;ENST00000588302.5;ENST00000590964.5	0.470	0.551	7.022	0.744(7128)	0.781(548)	0.973(16913)	non tumor-specific	alt_5prime;exon_skip	yes
LMNTD2_LS014	chr11:558784|558856:-	LMNTD2	lamin tail domain containing 2	protein coding gene	no	ENST00000492515.1	0.199	0.041	0.811	0.114(1093)	0.071(50)	0.245(4256)	non tumor-specific	alt_3prime;intron_retention	yes
KCNMB3_LS004	chr3:179243284|179244495:-	KCNMB3	potassium calcium-activated channel subfamily M regulatory beta subunit 3	protein coding gene	no	ENST00000485523.5;ENST00000392686.6;ENST00000392685.6;ENST00000314235.9;ENST00000349697.2	2.637	1.060	3.449	0.875(8380)	0.83(583)	0.9(15651)	non tumor-specific	alt_5prime;exon_skip	yes
AL139275.2_LS002	chr6:40276126|40276215:-	AL139275.2	-	lncRNA gene	no	ENST00000444731.1	2.409	0.675	0.702	0.013(129)	0.123(86)	0.014(245)	non tumor-specific	nAS	yes
UN_IDUA_LS0037	chr4:987477|987809:+	IDUA	alpha-L-iduronidase	protein coding gene	no	.	1.053	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_AP000365.1_UP_LS0003	chr22:16601407|16602064:+	AP000365.1	-	lncRNA gene	no	.	3.521	1.583	0.000	0.232(2227)	0.536(376)	0(0)	non tumor-specific	nAS	no
TMSB15B-AS1_LS004	chrX:103919080|103919425:-	TMSB15B-AS1	TMSB15B antisense RNA 1	lncRNA gene	no	ENST00000614615.1	0.407	0.162	0.783	0.09(860)	0.04(28)	0.273(4742)	non tumor-specific	nAS	yes
FOCAD_LS043	chr9:20927891|20933014:+	FOCAD	focadhesin	protein coding gene	no	ENST00000604254.5	0.027	0.010	0.552	0.341(3270)	0.375(263)	0.004(67)	non tumor-specific	exon_skip	yes
UN_FP236383.1_UP_LS0763	chr21:8259271|8259370:+	FP236383.1	-	lncRNA gene	no	.	619.353	38.142	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC004470.1_LS001	chrX:22698564|22768693:+	AC004470.1	-	lncRNA gene	no	ENST00000442155.1	0.054	0.003	0.685	0.001(5)	0.001(1)	0(1)	non tumor-specific	nAS	yes
UN_ZNF702P_LS0005	chr19:52986846|53007615:-	ZNF702P	zinc finger protein 702, pseudogene	pseudogene	no	.	1.348	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LAS1L_LS007	chrX:65520817|65522431:-	LAS1L	LAS1 like ribosome biogenesis factor	protein coding gene	no	.;.;.	2.228	0.186	0.000	0.001(10)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PFKFB2_LS008	chr1:207053366|207054701:+	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein coding gene	no	ENST00000367080.7;ENST00000464777.5;ENST00000468857.1;ENST00000367079.3	5.070	7.344	3.454	0.824(7896)	0.87(611)	0.854(14851)	non tumor-specific	alt_5prime;exon_skip	yes
EPHA10_LS044	chr1:37735390|37756536:-	EPHA10	EPH receptor A10	protein coding gene	no	ENST00000446149.6	0.156	0.007	0.925	0.007(68)	0.004(3)	0.001(23)	non tumor-specific	nAS	yes
UN_TRIM29_LS0112	chr11:120120686|120122954:-	TRIM29	tripartite motif containing 29	protein coding gene	no	.	77.666	91.539	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
FMO8P_LS002	chr1:166573777|166574600:+	FMO8P	flavin containing dimethylaniline monoxygenase 8, pseudogene	pseudogene	no	ENST00000434461.1	6.114	0.000	0.849	0.003(32)	0(0)	0.012(208)	non tumor-specific	nAS	yes
TPPP3_LS011	chr16:67393037|67393380:-	TPPP3	tubulin polymerization promoting protein family member 3	protein coding gene	no	ENST00000290942.9	0.907	1.333	2.009	0.59(5652)	0.774(543)	0.642(11162)	non tumor-specific	exon_skip;intron_retention	yes
UN_FBLN1_LS0059	chr22:45576430|45576977:+	FBLN1	fibulin 1	protein coding gene	yes	.	1.953	7.624	0.000	0.009(82)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_LATS2_LS0009	chr13:20983806|20987632:-	LATS2	large tumor suppressor kinase 2	protein coding gene	yes	.	2.137	0.979	0.000	0.009(86)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
CORO6_LS003	chr17:29615854|29615945:-	CORO6	coronin 6	protein coding gene	no	ENST00000469090.5;ENST00000459686.5;ENST00000467534.5;ENST00000480954.6;ENST00000584969.5;ENST00000469090.5;ENST00000459686.5;ENST00000467534.5;ENST00000480954.6;ENST00000584969.5	2.690	3.056	34.686	0.403(3865)	0.389(273)	0.968(16818)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_WASH2P_LS0009	chr2:113588703|113594288:+	WASH2P	WASP family homolog 2, pseudogene	pseudogene	no	.	1.296	0.210	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
CHEK2_LS025	chr22:28719485|28724977:-	CHEK2	checkpoint kinase 2	protein coding gene	yes	ENST00000404276.6;ENST00000348295.7;ENST00000328354.10;ENST00000405598.5;ENST00000382580.6;ENST00000650281.1;ENST00000433728.5;ENST00000402731.5;ENST00000425190.6;ENST00000439200.5	15.355	3.122	2.959	0.951(9114)	0.929(652)	0.853(14833)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
EEF1D_LS050	chr8:143586852|143593893:-	EEF1D	eukaryotic translation elongation factor 1 delta	protein coding gene	yes	ENST00000524397.5;ENST00000530191.5;ENST00000524397.5;ENST00000530191.5	0.041	0.070	0.847	0.26(2488)	0.266(187)	0.46(7989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ERG_LS0010	chr21:38445621|38448597:-	ERG	ETS transcription factor ERG	protein coding gene	yes	.	0.957	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MAST4_LS059	chr5:67149589|67152637:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11	0.245	0.421	1.270	0.144(1382)	0.339(238)	0.406(7053)	non tumor-specific	exon_skip	yes
UN_MYLK_LS0118	chr3:123734222|123737378:-	MYLK	myosin light chain kinase	protein coding gene	no	.	9.509	0.168	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC018638.4_UP_LS0087	chr7:128642281|128647923:+	AC018638.4	-	pseudogene	no	.	5.900	2.458	0.000	0.442(4238)	0.395(277)	0(0)	non tumor-specific	nAS	no
NR2F1_LS005	chr5:93588444|93593562:+	NR2F1	nuclear receptor subfamily 2 group F member 1	protein coding gene	no	ENST00000644230.1;ENST00000327111.7;ENST00000647447.1;ENST00000615873.1	28.189	37.438	39.000	0.95(9099)	0.991(696)	0.905(15730)	non tumor-specific	alt_3prime	yes
PPP2R2D_LS049	chr10:131958706|131959299:+	PPP2R2D	protein phosphatase 2 regulatory subunit Bdelta	protein coding gene	no	.;.;.	0.317	0.300	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
EPS15_LS026	chr1:51458733|51461091:-	EPS15	epidermal growth factor receptor pathway substrate 15	protein coding gene	no	ENST00000371727.5	0.326	0.171	0.822	0.416(3990)	0.416(292)	0.405(7046)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CIITA_LS001	chr16:10866319|10895282:+	CIITA	class II major histocompatibility complex transactivator	protein coding gene	no	ENST00000636238.1	1.174	0.129	0.724	0.002(17)	0.001(1)	0.115(2001)	non tumor-specific	nAS	yes
AC009053.3_LS001	chr16:74422442|74434443:+	AC009053.3	-	lncRNA gene	no	ENST00000567148.1;ENST00000566506.1	0.646	0.252	1.533	0.099(944)	0.177(124)	0.04(690)	non tumor-specific	nAS	yes
PCGF2_LS016	chr17:38739682|38740291:-	PCGF2	polycomb group ring finger 2	protein coding gene	yes	ENST00000620225.4;ENST00000616199.4;ENST00000611883.4;ENST00000616129.4;ENST00000618941.4	77.233	44.413	49.876	0.976(9351)	0.986(692)	0.961(16697)	non tumor-specific	alt_3prime;exon_skip	yes
COL1A1_LS030	chr17:50193047|50193943:-	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	ENST00000225964.9;ENST00000476387.1	1053.909	461.079	143.693	0.974(9336)	0.994(698)	0.956(16619)	non tumor-specific	alt_5prime;exon_skip	yes
PKD1L3_LS029	chr16:71998394|71999684:-	PKD1L3	polycystin 1 like 3, transient receptor potential channel interacting	protein coding gene	no	ENST00000620267.1	2.473	0.000	0.705	0.004(34)	0(0)	0.065(1134)	non tumor-specific	nAS	yes
UN_ABCF1_LS0032	chr6:30590753|30590784:-	ABCF1	ATP binding cassette subfamily F member 1	protein coding gene	no	.	4.300	0.079	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
G2E3-AS1_LS002	chr14:30450692|30451868:-	G2E3-AS1	G2E3 antisense RNA 1	lncRNA gene	no	ENST00000548631.5	0.144	0.000	0.792	0.001(14)	0(0)	0(4)	non tumor-specific	nAS	yes
UN_AKT1_LS0094	chr14:104794716|104795484:-	AKT1	AKT serine/threonine kinase 1	protein coding gene	yes	.	0.327	0.139	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TMEM231_LS011	chr16:75546077|75555804:-	TMEM231	transmembrane protein 231	protein coding gene	no	ENST00000562410.5;ENST00000561809.1	0.810	0.649	1.657	0.74(7088)	0.816(573)	0.721(12538)	non tumor-specific	alt_3prime	yes
UN_IGHEP1_UP_LS0181	chr14:105743070|105771112:-	IGHEP1	immunoglobulin heavy constant epsilon P1 (pseudogene)	no	no	.	809.901	171.756	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
U2AF1L5_LS003	chr21:6486455|6487107:-	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein coding gene	no	ENST00000623375.3;ENST00000610664.4;ENST00000639996.1;ENST00000620065.4;ENST00000624739.1;ENST00000619610.2;ENST00000636315.1	280.754	121.145	0.693	0.997(9552)	0.997(700)	0.182(3160)	non tumor-specific	nAS	yes
SSR2_LS032	chr1:156020167|156020727:-	SSR2	signal sequence receptor subunit 2	protein coding gene	no	ENST00000480567.5	0.089	0.441	0.898	0.927(8883)	0.953(669)	0.433(7523)	non tumor-specific	alt_5prime	yes
AC104389.4_LS015	chr11:5626854|5645685:-	AC104389.4	-	protein coding gene	no	ENST00000380259.7	1.405	0.000	0.684	0(2)	0(0)	0.063(1094)	non tumor-specific	exon_skip	yes
KCTD3_LS014	chr1:215604302|215608017:+	KCTD3	potassium channel tetramerization domain containing 3	protein coding gene	no	ENST00000259154.8;ENST00000452413.1	71.118	55.532	41.068	0.987(9455)	0.997(700)	0.969(16843)	non tumor-specific	alt_3prime;exon_skip	yes
EGLN3_LS011	chr14:34092402|34126253:-	EGLN3	egl-9 family hypoxia inducible factor 3	protein coding gene	yes	ENST00000548285.5	3.135	0.702	0.977	0.047(451)	0.043(30)	0.238(4135)	non tumor-specific	exon_skip	yes
DYSF_LS018	chr2:71535089|71535268:+	DYSF	dysferlin	protein coding gene	no	ENST00000409762.5;ENST00000409582.7;ENST00000429174.6;ENST00000413539.6;ENST00000258104.7;ENST00000409651.5;ENST00000394120.6;ENST00000409744.5;ENST00000409366.5;ENST00000410020.7;ENST00000410041.1	6.092	4.649	8.781	0.732(7010)	0.906(636)	0.904(15713)	non tumor-specific	nAS	yes
UN_RHOD_LS0014	chr11:67071598|67071649:-	RHOD	ras homolog family member D	protein coding gene	no	.	3.577	0.350	0.000	0.009(87)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC017000.1_UP_LS0005	chr7:4435911|4436509:-	AC017000.1	-	lncRNA gene	no	.	2.284	0.216	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	nAS	no
ANKRD20A8P_LS003	chr2:94798141|94798734:-	ANKRD20A8P	ankyrin repeat domain 20 family member A8, pseudogene	pseudogene	no	ENST00000432432.7	3.481	0.261	0.000	0.008(79)	0.021(15)	0(0)	non tumor-specific	nAS	yes
UN_GPS1_LS0016	chr17:82053963|82054634:-	GPS1	G protein pathway suppressor 1	protein coding gene	no	.	0.880	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SETD4_LS038	chr21:36058973|36060282:-	SETD4	SET domain containing 4	protein coding gene	no	ENST00000399205.5;ENST00000399208.6	0.014	0.050	0.723	0.167(1600)	0.135(95)	0.189(3278)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_NMD3_LS0007	chr3:161104895|161105003:-	NMD3	NMD3 ribosome export adaptor	protein coding gene	no	.	0.509	0.239	0.000	0.014(130)	0.036(25)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
HEATR1_LS031	chr1:236585941|236586241:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	ENST00000366582.7;ENST00000366581.6	10.363	4.070	5.528	0.834(7986)	0.883(620)	0.91(15810)	non tumor-specific	exon_skip	yes
TOPAZ1_LS019	chr3:44328433|44331792:+	TOPAZ1	testis and ovary specific PAZ domain containing 1	protein coding gene	no	ENST00000309765.4	6.174	0.000	1.056	0.001(13)	0(0)	0.029(501)	non tumor-specific	nAS	yes
MOV10L1_LS020	chr22:50134630|50142081:+	MOV10L1	Mov10 like RISC complex RNA helicase 1	protein coding gene	no	ENST00000545383.5;ENST00000262794.9;ENST00000395858.7;ENST00000540615.5;ENST00000434497.1	2.762	0.206	1.167	0.04(379)	0.013(9)	0.432(7502)	non tumor-specific	exon_skip	yes
CCDC18-AS1_LS006	chr1:93269758|93305388:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	ENST00000451302.6	0.093	0.036	0.996	0.106(1020)	0.114(80)	0.445(7738)	non tumor-specific	nAS	yes
UN_CAPN1_LS0175	chr11:65211648|65211800:-	CAPN1	calpain 1	protein coding gene	no	.	10.180	0.360	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IQCH_LS0037	chr15:67413622|67421335:-	IQCH	spermatogenesis associated 17	protein coding gene	no	.	0.925	0.269	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	nAS	no
IFRD1_LS018	chr7:112462179|112462270:+	IFRD1	interferon related developmental regulator 1	protein coding gene	no	ENST00000005558.8;ENST00000621379.4;ENST00000403825.7;ENST00000535603.5;ENST00000421296.1	54.629	28.171	81.848	0.994(9522)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SESN1_LS0001	chr6:108987605|108988543:-	SESN1	sestrin 1	protein coding gene	no	.	17.952	2.923	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
TRRAP_LS078	chr7:98994848|99004190:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1;ENST00000360902.2	52.162	22.900	22.830	0.978(9368)	0.976(685)	0.978(17006)	non tumor-specific	exon_skip	yes
SPACA3_LS010	chr17:32997523|32997712:+	SPACA3	sperm acrosome associated 3	protein coding gene	no	ENST00000580599.5;ENST00000269053.7;ENST00000394638.1;ENST00000394637.2	4.787	0.338	0.853	0.059(567)	0.017(12)	0.167(2907)	non tumor-specific	nAS	yes
OTOG_LS010	chr11:17557323|17558462:+	OTOG	otogelin	protein coding gene	no	ENST00000485669.1	0.337	0.000	0.781	0.004(39)	0(0)	0.001(17)	non tumor-specific	alt_3prime	yes
UN_STAT5B_LS0031	chr17:42219837|42223382:-	STAT5B	signal transducer and activator of transcription 5B	protein coding gene	no	.	4.522	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime	no
TDO2_LS008	chr4:155903793|155904018:+	TDO2	tryptophan 2,3-dioxygenase	protein coding gene	no	ENST00000509738.1;ENST00000536354.2	4.583	35.941	1.319	0.619(5935)	0.417(293)	0.206(3588)	non tumor-specific	exon_skip	yes
MIR99AHG_LS017	chr21:16537439|16606994:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	ENST00000456342.5;ENST00000445461.6;ENST00000602901.5;ENST00000602339.5;ENST00000418813.6;ENST00000602620.1	3.396	2.209	10.032	0.637(6103)	0.899(631)	0.898(15613)	non tumor-specific	nAS	yes
NCOA2_LS022	chr8:70163566|70166566:-	NCOA2	nuclear receptor coactivator 2	protein coding gene	no	ENST00000452400.6;ENST00000518287.6	12.661	10.446	5.256	0.777(7448)	0.915(642)	0.931(16185)	non tumor-specific	alt_3prime	yes
TLL2_LS019	chr10:96422727|96428631:-	TLL2	tolloid like 2	protein coding gene	no	ENST00000357947.3;ENST00000469598.1	4.488	1.511	1.369	0.255(2443)	0.214(150)	0.436(7586)	non tumor-specific	nAS	yes
UN_AC006288.1_UP_LS0018	chr9:118976513|118977316:+	AC006288.1	-	lncRNA gene	no	.	3.539	0.422	0.000	0.007(71)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HSPG2_LS0353	chr1:21860235|21861764:-	HSPG2	heparan sulfate proteoglycan 2	protein coding gene	no	.	6.713	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
GLT8D1_LS003	chr3:52695035|52695190:-	GLT8D1	glycosyltransferase 8 domain containing 1	protein coding gene	no	ENST00000266014.10;ENST00000478968.6;ENST00000394783.7;ENST00000491606.5;ENST00000481643.5;ENST00000484163.5;ENST00000463827.1;ENST00000266014.10;ENST00000478968.6;ENST00000394783.7;ENST00000491606.5;ENST00000481643.5;ENST00000484163.5;ENST00000463827.1	92.423	50.687	72.362	0.988(9468)	0.989(694)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC116337.3_LS0007	chr5:74946863|74948301:+	AC116337.3	-	lncRNA gene	no	.	3.406	0.789	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC6A13_LS014	chr12:223845|223992:-	SLC6A13	solute carrier family 6 member 13	protein coding gene	no	ENST00000539668.1	0.545	0.290	1.135	0.097(934)	0.209(147)	0.109(1890)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTLL6_LS009	chr17:48790106|48791378:-	TTLL6	tubulin tyrosine ligase like 6	protein coding gene	no	ENST00000433608.6;ENST00000416950.5;ENST00000490027.5;ENST00000393382.7;ENST00000376681.7	3.613	3.156	1.358	0.137(1316)	0.245(172)	0.446(7754)	non tumor-specific	nAS	yes
UN_AC138938.1_UP_LS0022	chr5:21032882|21113745:-	AC138938.1	-	pseudogene	no	.	2.945	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
CDK5RAP1_LS009	chr20:33370629|33374115:-	CDK5RAP1	CDK5 regulatory subunit associated protein 1	protein coding gene	no	.;.	7.583	0.364	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
CCDC155_LS014	chr19:49397717|49397982:+	CCDC155	KASH domain containing 5	protein coding gene	no	ENST00000447857.7;ENST00000596771.5;ENST00000595828.5;ENST00000594043.5;ENST00000600570.1;ENST00000596130.5	1.721	0.158	1.119	0.063(601)	0.046(32)	0.144(2496)	non tumor-specific	nAS	yes
USP2-AS1_LS010	chr11:119524336|119526362:+	USP2-AS1	USP2 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000500970.5	0.683	0.000	0.662	0(1)	0(0)	0.008(144)	non tumor-specific	nAS	yes
CFAP61_LS020	chr20:20159443|20166397:+	CFAP61	cilia and flagella associated protein 61	protein coding gene	no	ENST00000442372.2	0.422	0.000	0.665	0(2)	0(0)	0.002(32)	non tumor-specific	mutex_exons	yes
UN_POLQ_LS0064	chr3:121540198|121541349:-	POLQ	DNA polymerase theta	protein coding gene	no	.	1.819	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KYAT1_LS0022	chr9:128845411|128859947:-	KYAT1	kynurenine aminotransferase 1	protein coding gene	no	.	1.843	0.909	0.000	0.027(255)	0.071(50)	0(0)	non tumor-specific	exon_skip	no
SPATS2_LS005	chr12:49367021|49371228:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000550643.5	0.067	0.029	0.630	0.062(591)	0.041(29)	0.004(75)	non tumor-specific	alt_5prime;exon_skip	yes
APLF_LS009	chr2:68513684|68526061:+	APLF	aprataxin and PNKP like factor	protein coding gene	no	ENST00000529851.5	1.376	0.360	0.589	0.037(359)	0.036(25)	0.001(18)	non tumor-specific	alt_5prime	yes
SMIM19_LS008	chr8:42542155|42546469:+	SMIM19	small integral membrane protein 19	protein coding gene	no	ENST00000416469.6	1.480	1.475	5.248	0.914(8758)	0.939(659)	0.955(16593)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TSPAN14_LS0023	chr10:80455138|80468547:+	TSPAN14	tetraspanin 14	protein coding gene	no	.	1.017	0.112	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
IZUMO3_LS005	chr9:24544760|24544972:-	IZUMO3	IZUMO family member 3	protein coding gene	no	ENST00000543880.6	47.306	0.000	0.704	0(3)	0(0)	0.005(94)	non tumor-specific	exon_skip	yes
UN_RACK1_LS0042	chr5:181238249|181239078:+	RACK1	receptor for activated C kinase 1	protein coding gene	no	.	24.410	8.788	0.000	0.04(383)	0.026(18)	0(0)	non tumor-specific	nAS	no
GFRA1_LS013	chr10:116272275|116272561:-	GFRA1	GDNF family receptor alpha 1	protein coding gene	no	ENST00000490345.1	1.019	0.688	1.337	0.217(2076)	0.517(363)	0.519(9021)	non tumor-specific	alt_5prime	yes
AC011287.2_LS004	chr7:13364540|13365012:-	AC011287.2	-	lncRNA gene	no	ENST00000456809.1	1.464	0.000	0.667	0.006(59)	0(0)	0.004(68)	non tumor-specific	nAS	yes
UN_TNRC18_LS0029	chr7:5308949|5312503:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	.	6.652	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
POLR2E_LS017	chr19:1090145|1090908:-	POLR2E	RNA polymerase II, I and III subunit E	protein coding gene	no	ENST00000586746.5;ENST00000615234.4;ENST00000612655.4;ENST00000591767.5;ENST00000589737.5;ENST00000215587.11;ENST00000586817.5;ENST00000585838.2	381.333	211.777	233.337	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNF213_LS0105	chr17:80353630|80354019:+	RNF213	ring finger protein 213	protein coding gene	no	.	3.016	0.446	0.000	0.011(110)	0.01(7)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
POLN_LS004	chr4:2075519|2076359:-	POLN	DNA polymerase nu	protein coding gene	no	ENST00000514521.5	0.330	0.078	0.750	0.067(638)	0.08(56)	0.072(1254)	non tumor-specific	alt_5prime;intron_retention	yes
ARHGEF2_LS011	chr1:155952828|155957713:-	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000474428.6	0.636	0.329	1.573	0.463(4434)	0.393(276)	0.694(12057)	non tumor-specific	exon_skip	yes
UN_GCN1_LS0068	chr12:120174169|120175746:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	.	12.787	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_NELFA_UP_LS0002	chr4:2049325|2050993:-	NELFA	negative elongation factor complex member A	protein coding gene	no	.	2.785	2.493	0.000	0.01(100)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PRKCSH_LS0115	chr19:11447524|11447558:+	PRKCSH	protein kinase C substrate 80K-H	protein coding gene	no	.	62.931	10.459	0.000	0.011(110)	0.011(8)	0(0)	non tumor-specific	nAS	no
UMPS_LS002	chr3:124730627|124735093:+	UMPS	uridine monophosphate synthetase	protein coding gene	no	ENST00000232607.6;ENST00000474588.5;ENST00000479719.5	24.245	12.409	10.774	0.989(9477)	0.994(698)	0.969(16841)	non tumor-specific	exon_skip	yes
PARD3_LS006	chr10:34284245|34317107:-	PARD3	par-3 family cell polarity regulator	protein coding gene	no	ENST00000545260.5;ENST00000545693.5;ENST00000374789.7;ENST00000374788.7;ENST00000350537.8;ENST00000374790.7;ENST00000466092.1	31.672	22.718	21.379	0.973(9319)	0.996(699)	0.949(16500)	non tumor-specific	alt_5prime;exon_skip	yes
PTPRN2_LS002	chr7:157540785|157548946:-	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	ENST00000389413.7;ENST00000409483.5;ENST00000389416.8;ENST00000389418.8;ENST00000648371.1	56.947	38.401	15.434	0.853(8169)	0.984(691)	0.972(16893)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PDIA5_LS011	chr3:123116298|123124066:+	PDIA5	protein disulfide isomerase family A member 5	protein coding gene	no	ENST00000489923.5;ENST00000316218.11;ENST00000489923.5;ENST00000316218.11	53.316	39.154	20.261	0.992(9503)	0.997(700)	0.953(16561)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DEGS1_LS0009	chr1:224192793|224192929:-	DEGS1	delta 4-desaturase, sphingolipid 1	protein coding gene	no	.	5.141	0.355	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
MME_LS018	chr3:155116559|155116664:+	MME	membrane metalloendopeptidase	protein coding gene	yes	ENST00000492661.5;ENST00000460393.5;ENST00000481828.5;ENST00000462745.5;ENST00000493237.5;ENST00000360490.6;ENST00000462837.5;ENST00000615825.1	4.203	17.108	4.920	0.584(5600)	0.781(548)	0.705(12254)	non tumor-specific	nAS	yes
UN_TACSTD2_LS0097	chr1:58576643|58576686:+	TACSTD2	tumor associated calcium signal transducer 2	protein coding gene	yes	.	14.807	21.093	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_STAT1_LS0042	chr2:191001319|191007563:-	STAT1	signal transducer and activator of transcription 1	protein coding gene	yes	.	65.861	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
PARN_LS001	chr16:14436772|14446888:-	PARN	poly(A)-specific ribonuclease	protein coding gene	no	ENST00000437198.6;ENST00000420015.6;ENST00000341484.11;ENST00000539279.5	87.616	41.357	34.313	0.992(9508)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GPR137_LS0031	chr11:64285380|64286482:+	GPR137	G protein-coupled receptor 137	protein coding gene	no	.	4.750	0.757	0.000	0.016(151)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_CDH19_LS0002	chr18:66505302|66511568:-	CDH19	cadherin 19	protein coding gene	no	.	2.612	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip	no
TMEM242_LS001	chr6:157292999|157318782:-	TMEM242	transmembrane protein 242	protein coding gene	no	ENST00000400788.8	18.235	14.885	51.377	0.974(9328)	0.97(681)	0.979(17021)	non tumor-specific	exon_skip	yes
CLIP1_LS018	chr12:122328162|122328261:-	CLIP1	CAP-Gly domain containing linker protein 1	protein coding gene	no	ENST00000361654.8;ENST00000545889.6;ENST00000302528.11;ENST00000358808.6;ENST00000620786.4;ENST00000537178.5;ENST00000648993.1;ENST00000540338.5	67.525	53.875	57.067	0.977(9358)	0.996(699)	0.979(17016)	non tumor-specific	nAS	yes
UN_Z82244.2_UP_LS0001	chr22:35349703|35351338:+	Z82244.2	-	lncRNA gene	no	.	1.829	1.231	0.000	0.001(12)	0.009(6)	0(0)	non tumor-specific	nAS	no
PCNX1_LS025	chr14:71026882|71028700:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000304743.6;ENST00000439984.7;ENST00000554691.5	9.919	7.177	7.759	0.838(8027)	0.943(662)	0.96(16693)	non tumor-specific	nAS	yes
TEX29_LS001	chr13:111316257|111320857:+	TEX29	testis expressed 29	protein coding gene	no	ENST00000497241.5	0.858	0.110	1.042	0.026(245)	0.007(5)	0.54(9388)	non tumor-specific	nAS	yes
LINC00943_LS006	chr12:126743480|126744770:+	LINC00943	long intergenic non-protein coding RNA 943	lncRNA gene	no	ENST00000535544.1;ENST00000345111.3;ENST00000540250.1	0.903	0.036	1.655	0.037(357)	0.007(5)	0.08(1399)	non tumor-specific	nAS	yes
UN_C1GALT1_UP_LS0018	chr7:6991312|7037303:+	C1GALT1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein coding gene	no	.	1.049	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0294	chr14:106606290|106643308:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	20.208	1.887	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TAOK3_LS0073	chr12:118246382|118246666:-	TAOK3	TAO kinase 3	protein coding gene	no	.	23.123	1.371	0.000	0.015(139)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ABCC6P1_LS0011	chr16:18582467|18591104:+	ABCC6P1	ATP binding cassette subfamily C member 6 pseudogene 1	pseudogene	no	.	2.142	0.138	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC084125.2_LS0001	chr8:144499522|144503962:-	AC084125.2	-	lncRNA gene	no	.	0.811	0.279	0.000	0.002(22)	0.024(17)	0(0)	non tumor-specific	nAS	no
AP3B2_LS034	chr15:82689232|82689378:-	AP3B2	adaptor related protein complex 3 subunit beta 2	protein coding gene	no	ENST00000642989.1;ENST00000261722.7;ENST00000620652.4;ENST00000535348.5;ENST00000535359.5;ENST00000541693.5;ENST00000535385.5;ENST00000542200.2;ENST00000561455.5;ENST00000535513.1	3.444	5.107	2.243	0.36(3446)	0.328(230)	0.729(12666)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ARFGAP1_LS013	chr20:63276651|63278117:+	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	ENST00000519273.6;ENST00000520485.5;ENST00000519273.6;ENST00000520485.5	0.460	0.491	1.172	0.569(5448)	0.436(306)	0.537(9328)	non tumor-specific	alt_5prime;exon_skip	yes
SIK3_LS011	chr11:116859604|116861274:-	SIK3	SIK family kinase 3	protein coding gene	no	ENST00000445177.5;ENST00000375300.5;ENST00000465421.5;ENST00000415541.5;ENST00000446921.6;ENST00000480468.1	20.779	18.504	29.363	0.975(9344)	0.991(696)	0.979(17018)	non tumor-specific	exon_skip	yes
TAGAP_LS008	chr6:159041515|159043589:-	TAGAP	T cell activation RhoGTPase activating protein	protein coding gene	no	ENST00000326965.7;ENST00000642909.1;ENST00000326965.7;ENST00000642909.1	0.092	0.091	0.764	0.263(2516)	0.353(248)	0.044(769)	non tumor-specific	alt_5prime;exon_skip	yes
MRVI1_LS001	chr11:10576575|10580455:-	MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein coding gene	yes	ENST00000424001.5;ENST00000547195.5;ENST00000423302.6;ENST00000558540.5;ENST00000541483.5;ENST00000531107.5;ENST00000527509.6;ENST00000534266.6;ENST00000529448.5	10.208	16.375	25.618	0.799(7651)	0.907(637)	0.964(16749)	non tumor-specific	nAS	yes
FBXO16_LS014	chr8:28447273|28452244:-	FBXO16	F-box protein 16	protein coding gene	no	ENST00000521548.5;ENST00000380254.6;ENST00000346498.6;ENST00000518734.5;ENST00000520481.1	6.459	3.553	3.530	0.764(7319)	0.765(537)	0.767(13340)	non tumor-specific	exon_skip	yes
ORMDL3_LS006	chr17:39924217|39927484:-	ORMDL3	ORMDL sphingolipid biosynthesis regulator 3	protein coding gene	no	.;.	8.858	4.931	0.000	0.015(146)	0.014(10)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_DPY30_UP_LS0001	chr2:32156421|32158148:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	.	0.777	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RN7SL201P_UP_LS0045	chr2:81579609|81583141:+	RN7SL201P	RNA, 7SL, cytoplasmic 201, pseudogene	small non-coding RNA gene	no	.	2.727	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01588_LS0066	chr14:50039858|50040441:-	LINC01588	long intergenic non-protein coding RNA 1588	lncRNA gene	no	.	1.381	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
LRP2_LS065	chr2:169247515|169256106:-	LRP2	LDL receptor related protein 2	protein coding gene	no	ENST00000649046.1;ENST00000263816.7;ENST00000443831.1	9.092	11.356	2.838	0.257(2466)	0.416(292)	0.221(3844)	non tumor-specific	nAS	yes
CCDC141_LS014	chr2:178878143|178884901:-	CCDC141	coiled-coil domain containing 141	protein coding gene	no	ENST00000443758.6;ENST00000343876.6;ENST00000446116.5;ENST00000409284.1	2.226	0.631	0.948	0.053(508)	0.161(113)	0.276(4793)	non tumor-specific	nAS	yes
IL6ST_LS021	chr5:55963506|55964146:-	IL6ST	interleukin 6 signal transducer	protein coding gene	no	ENST00000381298.6;ENST00000336909.9;ENST00000381287.8;ENST00000503773.6;ENST00000502326.7;ENST00000381294.7;ENST00000522633.2	18.933	25.607	21.351	0.872(8352)	0.977(686)	0.963(16744)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPIL4_LS0013	chr6:149535722|149540942:-	PPIL4	peptidylprolyl isomerase like 4	protein coding gene	no	.	4.948	2.361	0.000	0.017(159)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
RASGEF1A_LS009	chr10:43200888|43201808:-	RASGEF1A	RasGEF domain family member 1A	protein coding gene	no	ENST00000374459.5;ENST00000395810.5;ENST00000395809.5;ENST00000374455.2;ENST00000472864.1	6.821	4.509	2.795	0.653(6259)	0.694(487)	0.803(13966)	non tumor-specific	alt_3prime	yes
PIK3CG_LS012	chr7:106882207|106883033:+	PIK3CG	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein coding gene	no	ENST00000440650.6;ENST00000496166.5;ENST00000473541.5;ENST00000359195.3	6.258	2.447	1.527	0.534(5121)	0.684(480)	0.573(9962)	non tumor-specific	exon_skip	yes
TLN1_LS046	chr9:35717440|35717619:-	TLN1	talin 1	protein coding gene	no	ENST00000314888.9	97.421	83.564	65.470	0.963(9231)	0.989(694)	0.979(17019)	non tumor-specific	nAS	yes
URI1_LS001	chr19:29923754|29925534:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	ENST00000585655.1	0.479	0.000	0.735	0.001(6)	0(0)	0.011(188)	non tumor-specific	intron_retention	yes
UN_CHKB_LS0003	chr22:50579507|50579735:-	CHKB	choline kinase beta	protein coding gene	no	.	4.884	0.490	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
EFCAB7_LS007	chr1:63534216|63545916:+	EFCAB7	EF-hand calcium binding domain 7	protein coding gene	no	ENST00000371088.4;ENST00000496956.1	10.066	6.592	5.502	0.938(8987)	0.94(660)	0.938(16309)	non tumor-specific	nAS	yes
BCAT1_LS005	chr12:24829897|24830230:-	BCAT1	branched chain amino acid transaminase 1	protein coding gene	no	ENST00000543099.1	0.012	0.006	0.686	0.509(4872)	0.405(284)	0.008(144)	non tumor-specific	nAS	yes
CNIH3_LS006	chr1:224435187|224513781:+	CNIH3	cornichon family AMPA receptor auxiliary protein 3	protein coding gene	no	ENST00000498126.5	1.043	0.419	0.676	0.217(2079)	0.201(141)	0.075(1301)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CLDN1_LS0017	chr3:190306804|190306837:+	CLDN1	claudin 1	protein coding gene	yes	.	4.286	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SFT2D1_LS0013	chr6:166332045|166341729:-	SFT2D1	SFT2 domain containing 1	protein coding gene	no	.	12.841	0.973	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_STK33_LS0013	chr11:8464822|8474681:-	STK33	serine/threonine kinase 33	protein coding gene	no	.	2.619	1.422	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF43_LS0050	chr19:21819221|21845392:-	ZNF43	zinc finger protein 43	protein coding gene	no	.	1.659	0.148	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
COL7A1_LS130	chr3:48593696|48594368:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000328333.12	7.431	2.282	4.053	0.49(4694)	0.375(263)	0.803(13954)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC007114.1_LS0004	chr17:57084678|57084840:-	AC007114.1	-	lncRNA gene	no	.	1.052	0.166	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SRC_LS0003	chr20:37344887|37347118:+	SRC	SRC proto-oncogene, non-receptor tyrosine kinase	protein coding gene	yes	.	4.344	1.190	0.000	0.011(107)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_LINC01153_UP_LS0023	chr10:121064471|121069817:+	LINC01153	long intergenic non-protein coding RNA 1153	lncRNA gene	no	.	3.759	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALDOB_LS0036	chr9:101429949|101430794:+	ALDOB	aldolase, fructose-bisphosphate B	protein coding gene	no	.	74.090	505.427	0.000	0.003(28)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_MDN1_LS0009	chr6:89644407|89645015:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	.	3.727	1.656	0.000	0.051(492)	0.054(38)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_FP236383.1_UP_LS0642	chr21:8216810|8260862:+	FP236383.1	-	lncRNA gene	no	.	94.402	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ZBTB8OS_LS034	chr1:32634072|32650441:-	ZBTB8OS	zinc finger and BTB domain containing 8 opposite strand	protein coding gene	no	.;.	8.230	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
RIPOR1_LS016	chr16:67539751|67539850:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	ENST00000566815.5;ENST00000561534.5	0.538	0.394	4.271	0.839(8042)	0.919(645)	0.942(16370)	non tumor-specific	alt_3prime;intron_retention	yes
UN_GGT3P_LS0015	chr22:18791229|18791773:-	GGT3P	gamma-glutamyltransferase 3 pseudogene	pseudogene	no	.	18.481	0.239	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UNKL_LS018	chr16:1385385|1390632:-	UNKL	unk like zinc finger	protein coding gene	no	ENST00000389221.8;ENST00000508903.6	3.274	2.117	9.126	0.762(7303)	0.822(577)	0.971(16872)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC88A_LS001	chr2:55288355|55291676:-	CCDC88A	coiled-coil domain containing 88A	protein coding gene	no	ENST00000642200.1;ENST00000647547.1;ENST00000412148.6	3.972	1.745	3.423	0.725(6951)	0.771(541)	0.902(15677)	non tumor-specific	alt_3prime;intron_retention	yes
SPOCK2_LS013	chr10:72072550|72088136:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	ENST00000536168.2	0.594	0.046	0.758	0.006(57)	0.006(4)	0.007(113)	non tumor-specific	nAS	yes
ALDH3A2_LS032	chr17:19673275|19675496:+	ALDH3A2	aldehyde dehydrogenase 3 family member A2	protein coding gene	no	ENST00000581518.5;ENST00000575384.2	6.694	4.238	5.233	0.78(7477)	0.895(628)	0.773(13430)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PFKM_LS020	chr12:48122653|48122767:+	PFKM	phosphofructokinase, muscle	protein coding gene	no	ENST00000549022.5	0.009	0.065	8.329	0.023(225)	0.02(14)	0.081(1416)	non tumor-specific	intron_retention	yes
UN_GCN1_LS0065	chr12:120170321|120175162:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	.	13.036	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SNX14_LS007	chr6:85513895|85514070:-	SNX14	sorting nexin 14	protein coding gene	no	ENST00000346348.7;ENST00000314673.7;ENST00000513865.5;ENST00000505648.5;ENST00000508980.5;ENST00000369627.6;ENST00000503491.5;ENST00000508658.5;ENST00000515216.5;ENST00000369635.6	101.541	68.305	80.899	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ZDHHC5_LS0077	chr11:57699366|57700057:-	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	.	0.917	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UPF1_LS012	chr19:18850868|18851050:+	UPF1	UPF1 RNA helicase and ATPase	protein coding gene	no	ENST00000600012.5	0.069	0.369	0.800	0.565(5411)	0.61(428)	0.359(6245)	non tumor-specific	exon_skip	yes
GRAP2_LS008	chr22:39968272|39969411:+	GRAP2	GRB2 related adaptor protein 2	protein coding gene	no	ENST00000344138.8;ENST00000407075.3	7.251	1.866	1.850	0.541(5183)	0.665(467)	0.626(10884)	non tumor-specific	nAS	yes
UN_HCFC1_LS0111	chrX:153959470|153959802:-	HCFC1	host cell factor C1	protein coding gene	no	.	2.774	0.774	0.000	0.011(101)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_BX890604.2_LS0070	chrX:3825231|3826610:-	BX890604.2	-	lncRNA gene	no	.	1.119	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
FAM91A1_LS012	chr8:123785119|123785629:+	FAM91A1	family with sequence similarity 91 member A1	protein coding gene	no	ENST00000521166.5;ENST00000334705.11;ENST00000519721.5;ENST00000517912.1	33.003	17.125	12.016	0.917(8784)	0.973(683)	0.971(16870)	non tumor-specific	nAS	yes
UN_TRPM3_LS0018	chr9:70604747|70607025:+	TRPM3	transient receptor potential cation channel subfamily M member 3	protein coding gene	no	.	2.915	0.184	0.000	0.009(83)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CCDC18-AS1_LS0032	chr1:93311608|93339357:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	.	1.715	0.499	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MLEC_LS0062	chr12:120699799|120699878:-	MLEC	malectin	protein coding gene	no	.	1.684	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SUGP2_LS049	chr19:19031082|19033437:-	SUGP2	SURP and G-patch domain containing 2	protein coding gene	no	ENST00000452918.6;ENST00000330854.15;ENST00000337018.10;ENST00000600239.5	7.640	4.149	16.991	0.942(9021)	0.969(680)	0.974(16933)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GOLGA3_LS0020	chr12:132770524|132771461:-	GOLGA3	golgin A3	protein coding gene	no	.	2.252	0.087	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FRRS1_LS016	chr1:99719647|99728493:-	FRRS1	ferric chelate reductase 1	protein coding gene	no	ENST00000646001.1;ENST00000287474.9	7.401	5.250	3.227	0.701(6721)	0.836(587)	0.789(13712)	non tumor-specific	exon_skip	yes
AC091044.1_LS001	chr18:49969979|49970842:-	AC091044.1	-	lncRNA gene	no	ENST00000591362.1	0.201	0.022	0.644	0.006(61)	0.003(2)	0.003(53)	non tumor-specific	nAS	yes
CPD_LS014	chr17:30446020|30449553:+	CPD	homer scaffold protein 2	protein coding gene	no	ENST00000225719.8;ENST00000543464.6	28.890	21.356	11.844	0.943(9038)	0.983(690)	0.971(16870)	non tumor-specific	exon_skip	yes
JAKMIP2_LS004	chr5:147612371|147617911:-	JAKMIP2	janus kinase and microtubule interacting protein 2	protein coding gene	no	ENST00000616793.4;ENST00000507386.5;ENST00000265272.9;ENST00000333010.6	16.896	4.271	3.037	0.255(2442)	0.242(170)	0.707(12290)	non tumor-specific	exon_skip	yes
UN_RPS27A_LS0014	chr2:55234966|55235428:+	RPS27A	ribosomal protein S27a	protein coding gene	no	.	18.100	3.750	0.000	0.006(62)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
XRCC6_LS003	chr22:41622086|41628118:+	XRCC6	X-ray repair cross complementing 6	protein coding gene	no	ENST00000360079.7;ENST00000464116.2;ENST00000402580.7;ENST00000359308.8;ENST00000405878.5	362.596	223.600	216.255	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PYGO2_LS0013	chr1:154957326|154957370:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	5.367	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
TSEN54_LS007	chr17:75516616|75517009:+	TSEN54	tRNA splicing endonuclease subunit 54	protein coding gene	no	ENST00000583173.5;ENST00000583173.5	0.045	0.012	0.676	0.124(1185)	0.047(33)	0.114(1979)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL591379.1_LS010	chr9:63125267|63125714:-	AL591379.1	-	pseudogene	no	ENST00000597935.5	0.330	0.017	0.701	0.008(76)	0.026(18)	0.054(938)	non tumor-specific	nAS	yes
KMT2D_LS044	chr12:49044522|49044744:-	KMT2D	lysine methyltransferase 2D	protein coding gene	no	ENST00000301067.11	4.499	2.411	7.616	0.715(6852)	0.818(574)	0.952(16555)	non tumor-specific	nAS	yes
UN_FNBP1_LS0048	chr9:129929695|129953366:-	FNBP1	formin binding protein 1	protein coding gene	no	.	1.641	0.812	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
OAZ2_LS004	chr15:64688834|64690374:-	OAZ2	ornithine decarboxylase antizyme 2	protein coding gene	no	ENST00000560258.6	0.665	1.272	1.000	0.77(7382)	0.796(559)	0.578(10050)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LSG1_LS0021	chr3:194648795|194651115:-	LSG1	large 60S subunit nuclear export GTPase 1	protein coding gene	no	.	2.306	0.137	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CABLES1_LS0025	chr18:23194540|23213982:+	CABLES1	Cdk5 and Abl enzyme substrate 1	protein coding gene	yes	.	7.288	0.529	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
RPH3AL_LS033	chr17:333934|335775:-	RPH3AL	rabphilin 3A like (without C2 domains)	protein coding gene	no	ENST00000574011.1	0.074	0.036	0.698	0.017(162)	0.051(36)	0.023(399)	non tumor-specific	nAS	yes
ACSBG2_LS001	chr19:6135360|6135824:+	ACSBG2	acyl-CoA synthetase bubblegum family member 2	protein coding gene	no	ENST00000591738.5	0.614	0.004	0.793	0.003(24)	0.004(3)	0.075(1306)	non tumor-specific	nAS	yes
UN_MUC7_LS0003	chr4:70472291|70474010:+	MUC7	mucin 7, secreted	protein coding gene	no	.	55.901	102.397	0.000	0.003(28)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LAYN_LS001	chr11:111540334|111543923:+	LAYN	layilin	protein coding gene	no	ENST00000533999.5	0.173	0.440	0.894	0.22(2111)	0.462(324)	0.229(3980)	non tumor-specific	alt_5prime	yes
UN_TRAPPC12_LS0048	chr2:3464528|3465597:+	TRAPPC12	trafficking protein particle complex 12	protein coding gene	no	.	1.653	0.084	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_TIA1_LS0004	chr2:70214491|70215125:-	TIA1	TIA1 cytotoxic granule associated RNA binding protein	protein coding gene	no	.	0.980	0.873	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FGF12_LS0002	chr3:192144127|192155243:-	FGF12	fibroblast growth factor 12	protein coding gene	no	.	2.537	0.673	0.000	0.009(85)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
DHRS12_LS023	chr13:51799667|51803543:-	DHRS12	dehydrogenase/reductase 12	protein coding gene	no	ENST00000497151.1	0.398	0.298	0.735	0.245(2349)	0.272(191)	0.223(3878)	non tumor-specific	nAS	yes
UN_AC007326.4_LS0012	chr22:18931198|18946066:-	AC007326.4	-	protein coding gene	no	.	1.512	2.108	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ARAP1_LS0196	chr11:72789251|72789980:+	ARAP1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	1.145	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALPK2_LS0038	chr18:58504148|58506255:-	ALPK2	alpha kinase 2	protein coding gene	no	.	1.129	0.069	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_POTEM_UP_LS0004	chr14:18952446|18954745:+	POTEM	POTE ankyrin domain family member M	protein coding gene	no	.	5.729	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
BBOX1-AS1_LS006	chr11:27217480|27219687:-	BBOX1-AS1	BBOX1 antisense RNA 1	lncRNA gene	no	ENST00000530430.1;ENST00000531363.1	2.449	0.411	0.903	0.411(3941)	0.271(190)	0.071(1230)	non tumor-specific	nAS	yes
ABCA3_LS031	chr16:2319840|2323523:-	ABCA3	ATP binding cassette subfamily A member 3	protein coding gene	no	ENST00000301732.9;ENST00000382381.7;ENST00000563623.5	16.578	30.488	6.364	0.716(6859)	0.866(608)	0.905(15735)	non tumor-specific	alt_5prime	yes
UN_AP003385.2_UP_LS0011	chr11:67683681|67688143:+	AP003385.2	-	pseudogene	no	.	5.230	0.606	0.000	0.016(152)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0381	chr1:631060|631212:-	AL669831.3	-	pseudogene	no	.	16.975	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_P4HA2_LS0045	chr5:132258324|132262609:+	P4HA2	prolyl 4-hydroxylase subunit alpha 2	protein coding gene	no	.	3.893	0.450	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
QTRT1_LS006	chr19:10706825|10707302:+	QTRT1	queuine tRNA-ribosyltransferase catalytic subunit 1	protein coding gene	no	ENST00000587599.5	0.043	0.226	5.337	0.62(5942)	0.443(311)	0.943(16398)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SEPT10_LS0022	chr2:109585321|109585748:-	SEPT10	septin 10	protein coding gene	no	.	5.100	1.695	0.000	0.026(246)	0.05(35)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CRELD2_LS0022	chr22:49925557|49925650:+	CRELD2	cysteine rich with EGF like domains 2	protein coding gene	no	.	2.420	1.324	0.000	0.012(115)	0.017(12)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TMEM39A_LS020	chr3:119452530|119458018:-	TMEM39A	transmembrane protein 39A	protein coding gene	no	ENST00000438581.6;ENST00000319172.9;ENST00000486235.5;ENST00000468676.5;ENST00000490099.5;ENST00000497993.5;ENST00000482162.1	27.240	14.166	24.039	0.974(9334)	0.987(693)	0.976(16962)	non tumor-specific	exon_skip	yes
HADHB_LS018	chr2:26277160|26278614:+	HADHB	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein coding gene	no	ENST00000448743.5;ENST00000537713.5;ENST00000317799.9;ENST00000425035.5;ENST00000494615.1;ENST00000545822.2	227.481	221.279	162.019	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
WASHC2A_LS032	chr10:50126179|50127160:+	WASHC2A	WASH complex subunit 2A	protein coding gene	no	ENST00000434114.6;ENST00000282633.9;ENST00000399339.6	45.255	28.747	5.678	0.987(9455)	0.996(699)	0.936(16262)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SEC14L1_LS183	chr17:77215831|77215884:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	4.779	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SLC36A4_LS0014	chr11:93182894|93185691:-	SLC36A4	solute carrier family 36 member 4	protein coding gene	no	.	0.853	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MARCH5_LS0004	chr10:92291529|92300913:+	MARCH5	membrane associated ring-CH-type finger 5	protein coding gene	no	.	0.371	0.277	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ADAT2_LS0060	chr6:143446898|143450563:-	ADAT2	adenosine deaminase tRNA specific 2	protein coding gene	no	.	2.461	1.050	0.000	0.243(2325)	0.189(133)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
APMAP_LS010	chr20:24969660|24970197:-	APMAP	adipocyte plasma membrane associated protein	protein coding gene	no	ENST00000451442.5;ENST00000217456.2	256.760	161.824	85.116	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
MPP3_LS014	chr17:43816079|43818046:-	MPP3	membrane palmitoylated protein 3	protein coding gene	no	ENST00000496503.5;ENST00000479797.1;ENST00000496503.5;ENST00000479797.1;ENST00000496503.5;ENST00000479797.1	2.322	1.153	6.668	0.619(5933)	0.638(448)	0.878(15270)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
BAIAP2L2_LS006	chr22:38086347|38086390:-	BAIAP2L2	BAR/IMD domain containing adaptor protein 2 like 2	protein coding gene	no	ENST00000332536.9	20.322	8.742	3.737	0.297(2841)	0.219(154)	0.45(7825)	non tumor-specific	nAS	yes
SS18_LS012	chr18:26052845|26057589:-	SS18	SS18 subunit of BAF chromatin remodeling complex	protein coding gene	yes	ENST00000415083.6;ENST00000542420.6;ENST00000579640.5;ENST00000269138.9;ENST00000269137.11;ENST00000585121.5;ENST00000539244.6;ENST00000585241.5;ENST00000578954.5;ENST00000579061.5;ENST00000577636.5;ENST00000584083.5;ENST00000578700.5	49.018	36.230	37.571	0.98(9394)	0.991(696)	0.978(16995)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM116_LS018	chr12:111938210|111965595:-	TMEM116	transmembrane protein 116	protein coding gene	no	ENST00000546537.6	0.168	0.003	0.775	0.458(4385)	0.567(398)	0.311(5406)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AKR1C1_UP_LS0022	chr10:4909606|4933237:+	AKR1C1	aldo-keto reductase family 1 member C1	protein coding gene	no	.	1.894	0.365	0.000	0.015(139)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
MALT1_LS032	chr18:58737926|58741865:+	MALT1	MALT1 paracaspase	protein coding gene	yes	ENST00000649756.1	2.478	0.201	0.000	0.008(74)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CABCOCO1_LS0005	chr10:61663350|61672632:+	CABCOCO1	ciliary associated calcium binding coiled-coil 1	protein coding gene	no	.	1.299	0.661	0.000	0.034(324)	0.051(36)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SSX2IP_LS021	chr1:84670815|84690154:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	ENST00000437941.6;ENST00000437941.6	0.074	0.087	0.859	0.43(4122)	0.452(317)	0.183(3181)	non tumor-specific	alt_5prime;exon_skip	yes
MRPL13_LS009	chr8:120443308|120445068:-	MRPL13	mitochondrial ribosomal protein L13	protein coding gene	no	ENST00000518696.5;ENST00000306185.7;ENST00000520677.1	32.065	18.387	40.904	0.995(9534)	0.996(699)	0.978(16998)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
KCNH5_LS013	chr14:63016954|63101800:-	KCNH5	potassium voltage-gated channel subfamily H member 5	protein coding gene	no	ENST00000394968.2;ENST00000394964.3	0.970	0.000	0.580	0.016(152)	0(0)	0.001(10)	non tumor-specific	nAS	yes
EFCAB13_LS006	chr17:47324523|47326226:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000517310.5;ENST00000520802.5;ENST00000331493.6;ENST00000519772.5;ENST00000517484.5	0.946	0.606	2.318	0.341(3263)	0.406(285)	0.755(13130)	non tumor-specific	intron_retention	yes
TMEM116_LS029	chr12:111978787|111991758:-	TMEM116	transmembrane protein 116	protein coding gene	no	ENST00000547878.6;ENST00000551297.6	0.061	0.039	1.159	0.553(5294)	0.749(526)	0.621(10793)	non tumor-specific	exon_skip;mutex_exons	yes
CYP4F24P_LS004	chr19:15761375|15769585:-	CYP4F24P	cytochrome P450 family 4 subfamily F member 24, pseudogene	pseudogene	no	ENST00000586049.3	2.798	0.455	2.352	0.043(408)	0.053(37)	0.518(8996)	non tumor-specific	nAS	yes
SIAE_LS015	chr11:124694521|124695609:-	SIAE	sialic acid acetylesterase	protein coding gene	no	ENST00000525730.1	1.981	0.058	0.665	0.004(41)	0.009(6)	0.021(367)	non tumor-specific	intron_retention	yes
ACP1_LS015	chr2:272305|275140:+	ACP1	NADH:ubiquinone oxidoreductase subunit AB1	protein coding gene	no	ENST00000272067.10;ENST00000405364.2;ENST00000453390.5	37.863	31.921	39.479	0.998(9560)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip;mutex_exons	yes
NT5DC4_LS010	chr2:112724126|112724781:+	NT5DC4	5'-nucleotidase domain containing 4	protein coding gene	no	ENST00000327581.4	3.512	0.000	0.856	0.001(8)	0(0)	0.06(1049)	non tumor-specific	exon_skip;intron_retention	yes
SLC35C2_LS005	chr20:46355178|46355802:-	SLC35C2	solute carrier family 35 member C2	protein coding gene	no	ENST00000543605.5;ENST00000481809.1	0.947	0.810	4.784	0.97(9290)	0.981(689)	0.951(16531)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC011294.1_LS0013	chr7:46689546|46690080:-	AC011294.1	-	lncRNA gene	no	.	1.282	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01685_LS003	chr1:38493621|38495831:+	LINC01685	long intergenic non-protein coding RNA 1685	lncRNA gene	no	ENST00000634464.1	4.210	0.000	0.627	0(3)	0(0)	0.008(143)	non tumor-specific	nAS	yes
TTF1_LS003	chr9:132386621|132388139:-	TTF1	transcription termination factor 1	protein coding gene	yes	ENST00000612514.4;ENST00000334270.2	24.504	13.033	16.502	0.988(9468)	0.987(693)	0.978(17007)	non tumor-specific	alt_5prime	yes
SAP130_LS002	chr2:127942537|127945456:-	SAP130	splicing factor 3b subunit 3	protein coding gene	no	ENST00000357702.9;ENST00000259235.7;ENST00000643581.1;ENST00000259234.10	46.319	23.172	29.362	0.994(9527)	0.996(699)	0.979(17017)	non tumor-specific	exon_skip	yes
FARP1_LS019	chr13:98331784|98343762:+	FARP1	FERM, ARH/RhoGEF and pleckstrin domain protein 1	protein coding gene	no	ENST00000599040.5	0.039	0.035	0.627	0.226(2165)	0.292(205)	0.005(88)	non tumor-specific	nAS	yes
AL157402.1_LS001	chr1:198597983|198598766:-	AL157402.1	-	lncRNA gene	no	ENST00000429469.1	0.527	0.104	0.657	0.011(108)	0.013(9)	0.007(125)	non tumor-specific	nAS	yes
STAB1_LS067	chr3:52522230|52522330:+	STAB1	stabilin 1	protein coding gene	no	ENST00000321725.10;ENST00000481626.5;ENST00000462741.5;ENST00000321725.10;ENST00000481626.5;ENST00000462741.5	19.454	14.401	79.917	0.973(9323)	0.983(690)	0.958(16651)	non tumor-specific	alt_3prime;alt_5prime	yes
COL5A2_LS041	chr2:189079107|189079978:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	ENST00000374866.8;ENST00000618828.1;ENST00000649066.1	50.805	18.418	16.600	0.877(8400)	0.939(659)	0.898(15612)	non tumor-specific	nAS	yes
ACOX2_LS021	chr3:58534145|58534576:-	ACOX2	acyl-CoA oxidase 2	protein coding gene	no	ENST00000475143.5	0.139	0.039	0.852	0.146(1401)	0.429(301)	0.3(5213)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
NEIL2_LS016	chr8:11779950|11783203:+	NEIL2	nei like DNA glycosylase 2	protein coding gene	no	ENST00000436750.7;ENST00000455213.6;ENST00000403422.7;ENST00000284503.6	20.863	13.997	17.049	0.983(9419)	0.994(698)	0.977(16983)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ASIP_LS0040	chr20:34228193|34261798:-	ASIP	par-3 family cell polarity regulator	protein coding gene	no	.	13.558	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01505_LS007	chr9:106588464|106603756:+	LINC01505	long intergenic non-protein coding RNA 1505	lncRNA gene	no	ENST00000435485.5;ENST00000425709.1	3.043	0.216	1.010	0.04(384)	0.006(4)	0.193(3348)	non tumor-specific	nAS	yes
BEX1_LS001	chrX:103063279|103063642:-	BEX1	brain expressed X-linked 1	protein coding gene	no	ENST00000372728.3	131.672	91.796	8.734	0.59(5648)	0.915(642)	0.908(15783)	non tumor-specific	nAS	yes
UN_AC034102.3_UP_LS0017	chr12:56112918|56117543:-	AC034102.3	-	lncRNA gene	no	.	3.288	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
NACC1_LS004	chr19:13136405|13137271:+	NACC1	nucleus accumbens associated 1	protein coding gene	no	ENST00000292431.4	87.204	40.391	26.784	0.988(9465)	0.991(696)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
NOX3_LS006	chr6:155429047|155430843:-	NOX3	NADPH oxidase 3	protein coding gene	no	ENST00000159060.2	7.522	0.000	0.713	0.001(14)	0(0)	0.008(133)	non tumor-specific	nAS	yes
UN_AC020916.1_LS0026	chr19:13835389|13835525:+	AC020916.1	-	lncRNA gene	no	.	1.636	0.648	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00513_LS003	chr7:130915102|130915900:+	LINC00513	long intergenic non-protein coding RNA 513	lncRNA gene	no	ENST00000447430.1	2.645	1.522	0.880	0.126(1207)	0.158(111)	0.222(3865)	non tumor-specific	nAS	yes
UN_PCCB_UP_LS0001	chr3:136106322|136171914:+	PCCB	propionyl-CoA carboxylase subunit beta	protein coding gene	no	.	3.984	0.246	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALG8_LS029	chr11:78114392|78114704:-	ALG8	ALG8 alpha-1,3-glucosyltransferase	protein coding gene	no	ENST00000532050.5	0.006	0.006	0.704	0.024(229)	0.02(14)	0.051(893)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NANS_LS003	chr9:98060997|98076918:+	NANS	N-acetylneuraminate synthase	protein coding gene	no	ENST00000210444.5	188.001	125.384	72.005	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL669831.3_LS0229	chr1:629846|633999:-	AL669831.3	-	pseudogene	no	.	79.494	5.002	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAB4B_LS013	chr19:40786978|40796570:+	RAB4B	RAB4B, member RAS oncogene family	protein coding gene	no	ENST00000357052.7;ENST00000378307.9;ENST00000597476.5;ENST00000598430.1	94.347	56.084	64.449	0.974(9328)	0.991(696)	0.979(17020)	non tumor-specific	nAS	yes
PTPRZ1_LS032	chr7:122040979|122042608:+	PTPRZ1	protein tyrosine phosphatase receptor type Z1	protein coding gene	no	ENST00000393386.6;ENST00000449182.1	95.563	12.664	8.592	0.356(3411)	0.355(249)	0.748(13010)	non tumor-specific	nAS	yes
AC024610.1_LS001	chr17:33976746|33980745:+	AC024610.1	-	lncRNA gene	no	ENST00000582685.1	0.121	0.000	0.718	0.003(31)	0.001(1)	0.002(42)	non tumor-specific	nAS	yes
UN_KAZN_LS0193	chr1:14890024|14907136:-	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	2.696	1.304	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	nAS	no
CAPNS1_LS032	chr19:36149621|36149813:+	CAPNS1	calpain small subunit 1	protein coding gene	no	.;.	135.651	56.846	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
SAMD10_LS002	chr20:63975832|63976971:-	SAMD10	sterile alpha motif domain containing 10	protein coding gene	no	ENST00000369886.7;ENST00000498830.5;ENST00000478694.1	19.001	7.629	7.872	0.964(9234)	0.962(675)	0.95(16521)	non tumor-specific	nAS	yes
UN_PFKP_LS0052	chr10:3136628|3137206:+	PFKP	phosphofructokinase, platelet	protein coding gene	no	.	2.196	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
ACTL6B_LS008	chr7:100647533|100648556:-	ACTL6B	actin like 6B	protein coding gene	no	ENST00000160382.9	37.290	11.025	14.416	0.094(899)	0.023(16)	0.29(5042)	non tumor-specific	nAS	yes
UN_SUZ12P1_LS0023	chr17:30746692|30786470:-	SUZ12P1	SUZ12 pseudogene 1	pseudogene	no	.	23.647	0.908	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
RGS6_LS010	chr14:72459683|72465758:+	RGS6	regulator of G protein signaling 6	protein coding gene	no	ENST00000553525.5;ENST00000555571.5;ENST00000553530.5;ENST00000554474.5;ENST00000556437.5;ENST00000355512.10;ENST00000404301.6;ENST00000406236.8;ENST00000407322.8;ENST00000402788.6;ENST00000622468.4;ENST00000343854.10;ENST00000555368.5;ENST00000434263.6	3.262	2.025	3.695	0.211(2017)	0.437(307)	0.753(13084)	non tumor-specific	exon_skip	yes
UN_PSME4_LS0034	chr2:53898354|53901350:-	PSME4	proteasome activator subunit 4	protein coding gene	no	.	5.380	0.064	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
GOLGA8CP_LS001	chr15:20562520|20564220:+	GOLGA8CP	golgin A8 family member C, pseudogene	pseudogene	no	ENST00000446144.2	0.166	0.000	0.735	0(2)	0(0)	0(6)	non tumor-specific	nAS	yes
LINC00174_LS022	chr7:66428040|66439135:-	LINC00174	long intergenic non-protein coding RNA 174	lncRNA gene	no	ENST00000638592.1	0.855	0.029	0.725	0.004(37)	0.001(1)	0.199(3467)	non tumor-specific	nAS	yes
UN_SCAMP2_LS0028	chr15:74844168|74844255:+	SCAMP2	secretory carrier membrane protein 2	protein coding gene	no	.	3.862	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CASP9_LS0020	chr1:15524190|15524852:-	CASP9	caspase 9	protein coding gene	no	.	1.661	0.081	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
PHF2_LS005	chr9:93636525|93645629:+	PHF2	PHD finger protein 2	protein coding gene	no	ENST00000359246.8	23.069	19.212	19.129	0.933(8937)	0.976(685)	0.975(16950)	non tumor-specific	nAS	yes
UN_KTN1_LS0023	chr14:55581093|55588908:+	KTN1	kinectin 1	protein coding gene	no	.	0.580	0.094	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ESR1_LS0060	chr6:151899313|151899363:-	ESR1	estrogen receptor 1	protein coding gene	yes	.	1.304	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00908_LS006	chr18:76530464|76610845:+	LINC00908	long intergenic non-protein coding RNA 908	lncRNA gene	no	ENST00000583578.5	0.358	0.207	0.713	0.07(672)	0.181(127)	0.083(1448)	non tumor-specific	exon_skip	yes
UN_CASC15_LS0089	chr6:22020542|22043647:+	CASC15	cancer susceptibility 15	lncRNA gene	no	.	3.439	0.060	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
MNX1_LS007	chr7:157005873|157008998:-	MNX1	motor neuron and pancreas homeobox 1	protein coding gene	no	ENST00000425745.1;ENST00000425745.1;ENST00000425745.1	0.139	0.008	0.656	0.033(313)	0.003(2)	0.002(36)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC090907.2_UP_LS0007	chr15:101147549|101151720:-	AC090907.2	-	lncRNA gene	no	.	1.566	0.114	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC117569.1_LS001	chr18:29518349|29519087:+	AC117569.1	-	lncRNA gene	no	ENST00000584482.5	2.882	0.000	0.841	0(2)	0(0)	0.002(32)	non tumor-specific	nAS	yes
FNDC3B_LS029	chr3:172341231|172343011:+	FNDC3B	fibronectin type III domain containing 3B	protein coding gene	yes	ENST00000415807.6;ENST00000336824.8;ENST00000416957.5	41.610	28.037	14.713	0.942(9021)	0.983(690)	0.947(16465)	non tumor-specific	exon_skip	yes
NR2F1-AS1_LS014	chr5:93544915|93553761:-	NR2F1-AS1	NR2F1 antisense RNA 1	lncRNA gene	no	ENST00000606233.5;ENST00000607831.5;ENST00000606696.5;ENST00000504474.5;ENST00000503134.5	1.966	1.822	5.307	0.661(6333)	0.852(598)	0.802(13943)	non tumor-specific	nAS	yes
UN_PHYHIP_LS0005	chr8:22224343|22224442:-	PHYHIP	phytanoyl-CoA 2-hydroxylase interacting protein	protein coding gene	no	.	1.119	0.216	0.000	0.008(75)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_PAK1_LS0030	chr11:77353595|77355668:-	PAK1	protein kinase N1	protein coding gene	yes	.	7.805	4.850	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ASH1L-IT1_UP_LS0006	chr1:155562522|155688403:-	ASH1L-IT1	ASH1L intronic transcript 1	lncRNA gene	no	.	0.669	0.182	0.000	0.075(719)	0.068(48)	0(0)	non tumor-specific	nAS	no
TBCD_LS014	chr17:82858667|82870224:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000576160.6;ENST00000571712.5	0.022	0.070	1.602	0.67(6419)	0.684(480)	0.192(3345)	non tumor-specific	exon_skip	yes
ANKFN1_LS012	chr17:56206578|56206925:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000574292.5	2.965	0.278	0.702	0.008(73)	0.001(1)	0.015(269)	non tumor-specific	exon_skip	yes
CMPK2_LS004	chr2:6861385|6862018:-	CMPK2	cytidine/uridine monophosphate kinase 2	protein coding gene	no	ENST00000491738.5	0.045	0.009	0.573	0.006(54)	0.006(4)	0.002(29)	non tumor-specific	nAS	yes
IGF2BP3_LS032	chr7:23418824|23431169:-	IGF2BP3	insulin like growth factor 2 mRNA binding protein 3	protein coding gene	no	ENST00000479504.5;ENST00000466809.6;ENST00000465058.5;ENST00000469723.5	0.011	0.007	0.533	0.117(1122)	0.006(4)	0.008(139)	non tumor-specific	nAS	yes
SEPT10_LS011	chr2:109565859|109567815:-	SEPT10	septin 10	protein coding gene	no	ENST00000356688.8;ENST00000397712.6;ENST00000397714.6;ENST00000437928.5;ENST00000415095.5;ENST00000468616.5;ENST00000483047.5;ENST00000486678.6;ENST00000425498.1;ENST00000493445.5;ENST00000423520.5	40.175	42.385	64.834	0.981(9402)	0.997(700)	0.968(16827)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
OCIAD2_LS022	chr4:48904634|48906658:-	OCIAD2	OCIA domain containing 2	protein coding gene	no	ENST00000620187.4;ENST00000381464.6	4.516	3.772	0.666	0.2(1917)	0.114(80)	0.043(755)	non tumor-specific	alt_3prime;exon_skip	yes
NIPBL_LS016	chr5:37001078|37002662:+	NIPBL	NIPBL cohesin loading factor	protein coding gene	no	ENST00000282516.12;ENST00000448238.2	17.051	11.407	8.465	0.857(8210)	0.96(674)	0.948(16479)	non tumor-specific	nAS	yes
UN_LGALS3BP_LS0433	chr17:78972598|78972642:+	LGALS3BP	galectin 3 binding protein	protein coding gene	no	.	15.496	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
FARP1_LS014	chr13:98329159|98338506:+	FARP1	FERM, ARH/RhoGEF and pleckstrin domain protein 1	protein coding gene	no	ENST00000598346.5	4.738	0.014	0.794	0.003(29)	0.004(3)	0.001(13)	non tumor-specific	nAS	yes
UN_GCLM_LS0023	chr1:93909250|93909332:+	GCLM	glutamate-cysteine ligase modifier subunit	protein coding gene	no	.	1.354	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SNX17_LS0023	chr2:27376842|27377031:-	SNX17	sorting nexin 17	protein coding gene	no	.	1.466	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BECN1_LS039	chr17:42823879|42824155:-	BECN1	beclin 1	protein coding gene	yes	ENST00000617806.4;ENST00000590099.5;ENST00000438274.7;ENST00000543382.6;ENST00000593205.5;ENST00000591085.1;ENST00000593112.1;ENST00000612631.1	30.384	24.564	22.636	0.935(8956)	0.964(677)	0.979(17010)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC062004.1_LS0007	chr8:77524699|77526524:-	AC062004.1	-	lncRNA gene	no	.	7.662	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VASH1_LS0035	chr14:76781710|76782563:-	VASH1	vasohibin 1	protein coding gene	no	.	0.608	0.275	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TXNDC17_LS0001	chr17:6640796|6640976:+	TXNDC17	thioredoxin domain containing 17	protein coding gene	no	.	1.101	38.805	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
HUWE1_LS040	chrX:53565239|53568692:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10	60.294	39.489	35.600	0.858(8224)	0.957(672)	0.978(16991)	non tumor-specific	nAS	yes
UN_CTNNBIP1_LS0064	chr1:9886710|9890172:-	CTNNBIP1	catenin beta interacting protein 1	protein coding gene	yes	.	1.283	0.083	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AGO4_LS0024	chr1:35840134|35841165:+	AGO4	argonaute RISC component 4	protein coding gene	no	.	4.240	0.288	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_BRDTP1_UP_LS0001	chrX:96351050|96359566:-	BRDTP1	bromodomain testis associated pseudogene 1	pseudogene	no	.	3.291	0.709	0.000	0.003(30)	0.014(10)	0(0)	non tumor-specific	nAS	no
LINC02207_LS002	chr15:93864155|93865381:+	LINC02207	long intergenic non-protein coding RNA 2207	lncRNA gene	no	ENST00000554530.5	4.173	0.000	0.739	0(2)	0(0)	0.023(408)	non tumor-specific	nAS	yes
UN_AC123768.3_LS0012	chr15:32603957|32614315:-	AC123768.3	-	lncRNA gene	no	.	0.599	0.092	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SFTPD_LS0013	chr10:79946662|79982202:-	SFTPD	surfactant protein D	protein coding gene	no	.	1.524	0.478	0.000	0.043(416)	0.091(64)	0(0)	non tumor-specific	alt_5prime	no
UN_RAB40A_UP_LS0010	chrX:103531184|103537907:-	RAB40A	RAB40A, member RAS oncogene family	protein coding gene	no	.	4.355	0.082	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF273_LS0039	chr7:64918292|64923366:+	ZNF273	zinc finger protein 273	protein coding gene	no	.	2.780	0.381	0.000	0.027(259)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
AL732372.2_LS029	chr1:504933|514359:-	AL732372.2	-	pseudogene	no	ENST00000641049.1	0.982	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	nAS	yes
PRR11_LS002	chr17:59155805|59163599:+	PRR11	proline rich 11	protein coding gene	no	ENST00000577457.1	0.052	0.023	0.746	0.252(2410)	0.067(47)	0.077(1346)	non tumor-specific	alt_3prime;exon_skip	yes
STAT4_LS029	chr2:191151081|191151334:-	STAT4	signal transducer and activator of transcription 4	protein coding gene	no	ENST00000432798.1	0.030	0.020	0.721	0.019(181)	0.011(8)	0.026(445)	non tumor-specific	exon_skip	yes
UN_LPCAT4_LS0030	chr15:34360827|34361169:-	LPCAT4	lysophosphatidylcholine acyltransferase 4	protein coding gene	no	.	5.084	0.238	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
SPTAN1_LS002	chr9:128552696|128555349:+	SPTAN1	spectrin alpha, non-erythrocytic 1	protein coding gene	no	ENST00000627441.2	0.002	0.015	1.365	0.126(1204)	0.214(150)	0.14(2438)	non tumor-specific	exon_skip;mutex_exons	yes
C11orf80_LS040	chr11:66816199|66828266:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	ENST00000533143.1	0.060	0.062	2.134	0.747(7156)	0.591(415)	0.734(12755)	non tumor-specific	alt_3prime;exon_skip	yes
MAP4K1_LS021	chr19:38601525|38605409:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	ENST00000591517.5;ENST00000589130.5;ENST00000396857.6;ENST00000591921.1;ENST00000585583.5	16.000	3.534	3.831	0.774(7419)	0.762(535)	0.9(15650)	non tumor-specific	alt_3prime	yes
UN_RABGEF1_LS0030	chr7:66700849|66771883:+	RABGEF1	RAB guanine nucleotide exchange factor 1	protein coding gene	no	.	1.546	0.679	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
TTN-AS1_LS025	chr2:178528813|178583524:+	TTN-AS1	TTN antisense RNA 1	lncRNA gene	no	ENST00000590807.5	0.061	0.001	0.548	0.001(10)	0.004(3)	0.003(44)	non tumor-specific	nAS	yes
UN_PSMD3_LS0064	chr17:39997574|39997629:+	PSMD3	proteasome 26S subunit, non-ATPase 3	protein coding gene	no	.	60.886	1.382	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FXYD6-FXYD2_LS0066	chr11:117837250|117837294:+	FXYD6-FXYD2	FXYD6-FXYD2 readthrough	protein coding gene	no	.	31.274	8.763	0.000	0.011(108)	0.014(10)	0(0)	non tumor-specific	nAS	no
ANKRD36C_LS010	chr2:95860074|95876439:-	ANKRD36C	ankyrin repeat domain 36C	protein coding gene	no	ENST00000534304.5;ENST00000295246.6	0.499	0.087	0.770	0.067(644)	0.051(36)	0.251(4355)	non tumor-specific	exon_skip	yes
UN_RAP2C_LS0022	chrX:132217367|132217757:-	RAP2C	RAP2C, member of RAS oncogene family	protein coding gene	no	.	4.099	0.287	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_FP236383.1_LS0120	chr21:8393174|8393837:+	FP236383.1	-	lncRNA gene	no	.	26.004	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
FAM153A_LS004	chr5:177713916|177714069:-	FAM153A	family with sequence similarity 153 member A	protein coding gene	no	ENST00000509607.5	0.223	0.173	2.520	0.21(2009)	0.251(176)	0.653(11359)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC010343.3_LS0004	chr5:32968774|32968993:+	AC010343.3	-	lncRNA gene	no	.	5.945	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL121904.1_UP_LS0003	chr20:26019924|26068917:+	AL121904.1	-	lncRNA gene	no	.	1.643	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2D4_LS017	chr7:43950692|43953105:+	UBE2D4	ubiquitin conjugating enzyme E2 D4 (putative)	protein coding gene	no	.;.	2.497	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SF3B4_LS0082	chr1:149928070|149928329:-	SF3B4	splicing factor 3b subunit 4	protein coding gene	no	.	3.554	1.233	0.000	0.044(421)	0.033(23)	0(0)	non tumor-specific	intron_retention	no
CEP112_LS036	chr17:66066877|66069915:-	CEP112	centrosomal protein 112	protein coding gene	no	ENST00000535342.6;ENST00000392769.6;ENST00000537949.5;ENST00000583358.1	5.070	4.639	8.194	0.736(7052)	0.866(608)	0.918(15948)	non tumor-specific	exon_skip	yes
UN_Z93930.2_LS0065	chr22:28844841|28846318:+	Z93930.2	-	lncRNA gene	no	.	1.970	0.884	0.000	0.05(482)	0.125(88)	0(0)	non tumor-specific	nAS	no
UN_WRN_LS0009	chr8:31065063|31068258:+	WRN	WRN RecQ like helicase	protein coding gene	no	.	1.265	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC006453.1_UP_LS0029	chr2:89862832|90083145:-	AC006453.1	-	pseudogene	no	.	36.573	29.949	0.000	0.024(227)	0.03(21)	0(0)	non tumor-specific	nAS	no
RPLP0P2_LS004	chr11:61629039|61636102:+	RPLP0P2	ribosomal protein lateral stalk subunit P0 pseudogene 2	pseudogene	no	ENST00000478959.1	0.540	0.260	0.740	0.15(1438)	0.048(34)	0.057(993)	non tumor-specific	nAS	yes
VSIG10_LS022	chr12:118117039|118117649:-	VSIG10	V-set and immunoglobulin domain containing 10	protein coding gene	no	ENST00000321694.5	0.144	0.000	0.734	0(2)	0(0)	0.001(16)	non tumor-specific	nAS	yes
UN_HSF1_LS0020	chr8:144309561|144309695:-	HSF1	heat shock transcription factor 1	protein coding gene	no	.	2.587	0.205	0.000	0.021(199)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CAMSAP3_LS0007	chr19:7606571|7607821:+	CAMSAP3	calmodulin regulated spectrin associated protein family member 3	protein coding gene	no	.	2.650	2.619	0.000	0.348(3332)	0.56(393)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CNTNAP3B_LS024	chr9:41929444|41953183:-	CNTNAP3B	contactin associated protein family member 3B	protein coding gene	no	ENST00000479351.5;ENST00000489789.3	0.337	0.117	0.717	0.125(1196)	0.245(172)	0.077(1341)	non tumor-specific	nAS	yes
UN_SYK_LS0015	chr9:90862344|90864593:+	SYK	spleen associated tyrosine kinase	protein coding gene	yes	.	3.501	5.429	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
PPP1R37_LS010	chr19:45140661|45141322:+	PPP1R37	protein phosphatase 1 regulatory subunit 37	protein coding gene	no	ENST00000545910.1	0.656	0.198	0.882	0.564(5402)	0.49(344)	0.425(7390)	non tumor-specific	alt_5prime	yes
EIF3B_LS002	chr7:2355116|2355234:+	EIF3B	eukaryotic translation initiation factor 3 subunit B	protein coding gene	no	ENST00000413917.5	0.968	0.585	2.679	0.78(7475)	0.726(510)	0.876(15226)	non tumor-specific	alt_5prime;intron_retention	yes
TJAP1_LS033	chr6:43503706|43505624:+	TJAP1	tight junction associated protein 1	protein coding gene	no	.;.;.	1.665	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PPWD1_LS0009	chr5:65578585|65579424:+	PPWD1	peptidylprolyl isomerase domain and WD repeat containing 1	protein coding gene	no	.	5.204	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	intron_retention	no
SLIT1_LS008	chr10:97004222|97004693:-	SLIT1	slit guidance ligand 3	protein coding gene	no	ENST00000266058.8;ENST00000371070.8	14.615	8.059	1.499	0.217(2076)	0.061(43)	0.535(9294)	non tumor-specific	nAS	yes
RPGR_LS030	chrX:38318987|38321027:-	RPGR	retinitis pigmentosa GTPase regulator	protein coding gene	no	ENST00000318842.11;ENST00000642395.1;ENST00000339363.7;ENST00000482855.5;ENST00000642170.1;ENST00000644238.1;ENST00000642739.1;ENST00000645124.1;ENST00000644337.1;ENST00000474584.5;ENST00000646020.1;ENST00000645032.1;ENST00000378505.7;ENST00000642558.1;ENST00000647261.1;ENST00000642373.1	7.314	5.363	8.123	0.865(8290)	0.939(659)	0.961(16709)	non tumor-specific	alt_3prime;exon_skip	yes
KLRF1_LS005	chr12:9832414|9844418:+	KLRF1	killer cell lectin like receptor F1	protein coding gene	no	ENST00000354855.7	0.297	0.115	0.743	0.009(91)	0.02(14)	0.016(285)	non tumor-specific	exon_skip	yes
HNRNPUL2_LS002	chr11:62715607|62715864:-	HNRNPUL2	heterogeneous nuclear ribonucleoprotein U like 2	protein coding gene	no	ENST00000301785.6	259.540	145.003	170.421	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
GRIK5_LS001	chr19:41999299|42003332:-	GRIK5	glutamate ionotropic receptor kainate type subunit 5	protein coding gene	no	ENST00000454993.6;ENST00000262895.7;ENST00000593562.5;ENST00000602210.1	11.701	5.899	11.891	0.562(5388)	0.725(509)	0.876(15222)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SLC41A2_LS0005	chr12:104824950|104844472:-	SLC41A2	solute carrier family 41 member 2	protein coding gene	no	.	0.534	1.105	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LRRC71_LS009	chr1:156925015|156927185:+	LRRC71	leucine rich repeat containing 71	protein coding gene	no	ENST00000490146.5	6.191	1.952	0.864	0.011(102)	0.013(9)	0.257(4468)	non tumor-specific	alt_3prime	yes
GALNT1_LS003	chr18:35627484|35654560:+	GALNT1	polypeptide N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000586725.1;ENST00000589189.5	4.610	3.066	0.905	0.099(944)	0.142(100)	0.382(6641)	non tumor-specific	exon_skip	yes
RNF6_LS006	chr13:26221330|26221514:-	RNF6	ring finger protein 6	protein coding gene	no	ENST00000381570.7;ENST00000476347.1	0.078	0.103	0.740	0.433(4149)	0.493(346)	0.201(3496)	non tumor-specific	alt_5prime	yes
MFSD12_LS011	chr19:3544939|3546074:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	ENST00000615073.4;ENST00000398558.8;ENST00000588918.5;ENST00000355415.6;ENST00000389395.7;ENST00000589063.5;ENST00000589995.1	117.574	42.859	43.809	0.996(9547)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
USP26_LS002	chrX:133045945|133083707:-	USP26	ubiquitin specific peptidase 26	protein coding gene	no	ENST00000417459.2	0.824	0.000	0.634	0.001(7)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_PDE5A_LS0029	chr4:119520372|119520935:-	PDE5A	phosphodiesterase 5A	protein coding gene	no	.	1.921	0.432	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
COL4A6_LS006	chrX:108163038|108164877:-	COL4A6	collagen type IV alpha 6 chain	protein coding gene	no	ENST00000538570.5	0.312	0.234	1.056	0.127(1219)	0.333(234)	0.232(4036)	non tumor-specific	exon_skip	yes
UN_LAMA5_LS0100	chr20:62312774|62312888:-	LAMA5	laminin subunit alpha 5	protein coding gene	no	.	6.231	0.118	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_IFT52_LS0015	chr20:43604258|43613850:+	IFT52	intraflagellar transport 52	protein coding gene	no	.	8.831	0.899	0.000	0.016(156)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
SLC1A6_LS002	chr19:14953062|14954135:-	SLC1A6	solute carrier family 1 member 6	protein coding gene	no	ENST00000430939.6;ENST00000221742.7;ENST00000600144.5	10.802	3.166	14.353	0.136(1305)	0.016(11)	0.293(5101)	non tumor-specific	exon_skip	yes
UN_CEP112_LS0053	chr17:66030023|66043096:-	CEP112	centrosomal protein 112	protein coding gene	no	.	1.589	0.530	0.000	0.031(301)	0.063(44)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SMIM4_LS0007	chr3:52534877|52536767:+	SMIM4	small integral membrane protein 4	protein coding gene	no	.	6.267	0.376	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TIAM2_LS019	chr6:155144778|155148110:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000461783.7;ENST00000528535.5;ENST00000360366.8;ENST00000529824.6	2.349	1.356	1.317	0.218(2087)	0.249(175)	0.543(9439)	non tumor-specific	nAS	yes
UN_TMEM184B_LS0101	chr22:38248019|38250956:-	TMEM184B	transmembrane protein 184B	protein coding gene	no	.	2.437	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IQSEC1_LS0050	chr3:12941865|12998526:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	.	1.288	0.276	0.000	0.011(104)	0.019(13)	0(0)	non tumor-specific	nAS	no
GORASP1_LS009	chr3:39100454|39100788:-	GORASP1	golgi reassembly stacking protein 1	protein coding gene	no	.;.	1.113	0.839	0.000	0.02(194)	0.036(25)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MIR8071-1_UP_LS0012	chr14:105532519|105533972:+	MIR8071-1	microRNA 8071-1	small non-coding RNA gene	no	.	2.135	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TACSTD2_LS0135	chr1:58577006|58577139:+	TACSTD2	tumor associated calcium signal transducer 2	protein coding gene	yes	.	11.741	2.534	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRMP_LS031	chr12:25075802|25079244:+	LRMP	inositol 1,4,5-triphosphate receptor associated 2	protein coding gene	yes	ENST00000557472.1	0.520	0.795	1.364	0.126(1203)	0.283(199)	0.141(2452)	non tumor-specific	exon_skip;mutex_exons	yes
UN_DHX33_LS0008	chr17:5450406|5453580:-	DHX33	DEAH-box helicase 33	protein coding gene	no	.	1.668	0.177	0.000	0.005(45)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_AL078590.3_LS0025	chr6:134558646|134558748:+	AL078590.3	-	lncRNA gene	no	.	1.426	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LEF1_LS020	chr4:108078462|108079492:-	LEF1	lymphoid enhancer binding factor 1	protein coding gene	yes	ENST00000506680.5	3.002	0.285	0.725	0.145(1387)	0.06(42)	0.004(75)	non tumor-specific	alt_3prime	yes
SH3RF2_LS001	chr5:145936694|145937823:+	SH3RF2	SH3 domain containing ring finger 2	protein coding gene	no	ENST00000359120.8	1.899	1.526	1.688	0.45(4312)	0.61(428)	0.463(8056)	non tumor-specific	alt_3prime	yes
S100A7A_LS001	chr1:153416563|153418066:+	S100A7A	S100 calcium binding protein A7A	protein coding gene	no	ENST00000368729.8	3.259	1.151	1.216	0.151(1446)	0.063(44)	0.043(752)	non tumor-specific	exon_skip	yes
UN_OR2B8P_UP_LS0004	chr6:28063018|28080626:-	OR2B8P	olfactory receptor family 2 subfamily B member 8 pseudogene	pseudogene	no	.	3.238	0.107	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC073111.4_LS006	chr7:150388501|150410160:+	AC073111.4	-	lncRNA gene	no	ENST00000483664.5;ENST00000486297.1	0.153	0.043	0.725	0.477(4567)	0.402(282)	0.171(2976)	non tumor-specific	exon_skip	yes
ARSD_LS006	chrX:2908842|2909817:-	ARSD	arylsulfatase D	protein coding gene	no	ENST00000381154.5;ENST00000458014.1	21.320	22.973	5.169	0.969(9286)	0.993(697)	0.923(16046)	non tumor-specific	exon_skip	yes
SLC39A12-AS1_LS001	chr10:18003396|18004311:-	SLC39A12-AS1	SLC39A12 antisense RNA 1	lncRNA gene	no	ENST00000439319.5;ENST00000445287.1	3.793	0.000	1.128	0.003(29)	0(0)	0.04(703)	non tumor-specific	nAS	yes
GRIN3B_LS006	chr19:1007971|1008140:+	GRIN3B	glutamate ionotropic receptor NMDA type subunit 3B	protein coding gene	no	ENST00000234389.3	7.207	2.813	0.852	0.1(960)	0.108(76)	0.255(4424)	non tumor-specific	nAS	yes
ACTL6B_LS016	chr7:100655586|100656330:-	ACTL6B	actin like 6B	protein coding gene	no	ENST00000461605.1;ENST00000461605.1	3.189	0.896	1.282	0.04(387)	0.007(5)	0.078(1354)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RGS3_LS0020	chr9:113501855|113505442:+	RGS3	regulator of G protein signaling 3	protein coding gene	no	.	1.335	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WASH8P_LS0070	chr12:18484|18602:-	WASH8P	WAS protein family homolog 8, pseudogene	pseudogene	no	.	5.420	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SERPINB7_LS0010	chr18:63774777|63782355:+	SERPINB7	serpin family B member 7	protein coding gene	no	.	2.383	0.595	0.000	0.006(57)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MRPL39_LS010	chr21:25593958|25597302:-	MRPL39	mitochondrial ribosomal protein L39	protein coding gene	no	ENST00000352957.8;ENST00000307301.11;ENST00000419219.1	97.580	56.842	55.021	0.996(9547)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
UN_KLF8_LS0006	chrX:56232868|56233158:+	KLF8	Kruppel like factor 8	protein coding gene	yes	.	1.456	0.239	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_MT-ND1_LS0084	chrM:4055|4107:-	MT-ND1	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1	protein coding gene	no	.	88.684	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF627_LS0109	chr19:11617699|11617944:-	ZNF627	zinc finger protein 627	protein coding gene	no	.	2.296	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MET_LS0014	chr7:116740084|116740936:+	MET	MET proto-oncogene, receptor tyrosine kinase	protein coding gene	yes	.	1.935	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
YY1AP1_LS004	chr1:155661423|155670320:-	YY1AP1	YY1 associated protein 1	protein coding gene	yes	ENST00000493625.5	0.101	0.092	2.687	0.823(7888)	0.846(594)	0.918(15960)	non tumor-specific	exon_skip	yes
UN_DPH7_LS0012	chr9:137556864|137558212:-	DPH7	diphthamide biosynthesis 7	protein coding gene	no	.	0.868	0.228	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1060P_UP_LS0025	chr6:23379368|23457590:-	RNU6-1060P	RNA, U6 small nuclear 1060, pseudogene	small non-coding RNA gene	no	.	3.743	0.736	0.000	0.009(91)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAN1B1_LS0030	chr9:137105916|137106125:+	MAN1B1	mannosidase alpha class 1B member 1	protein coding gene	no	.	4.924	0.621	0.000	0.025(243)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
UN_DNAJC15_LS0011	chr13:43043636|43065686:+	DNAJC15	DnaJ heat shock protein family (Hsp40) member C15	protein coding gene	no	.	4.004	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SSBP3_LS003	chr1:54228356|54228449:-	SSBP3	single stranded DNA binding protein 3	protein coding gene	no	ENST00000326956.11;ENST00000610401.4;ENST00000528930.5;ENST00000417664.6;ENST00000371320.7;ENST00000371319.7;ENST00000357475.8;ENST00000426150.5	90.697	59.287	87.581	0.999(9567)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
ZNF692_LS020	chr1:248855946|248856288:-	ZNF692	zinc finger protein 692	protein coding gene	no	ENST00000463519.5;ENST00000306601.8;ENST00000533927.5;ENST00000451251.5;ENST00000470787.6	20.854	6.800	42.497	0.972(9311)	0.943(662)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FER1L4_LS050	chr20:35604621|35605102:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	ENST00000325076.9	0.861	0.171	1.320	0.046(436)	0.024(17)	0.125(2169)	non tumor-specific	nAS	yes
UN_ELP6_LS0003	chr3:47498432|47501594:-	ELP6	elongator acetyltransferase complex subunit 6	protein coding gene	no	.	5.515	0.673	0.000	0.003(29)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC119677.1_LS001	chr1:40864395|40876467:+	AC119677.1	-	lncRNA gene	no	ENST00000414199.1	2.562	0.000	0.658	0.001(12)	0(0)	0.001(15)	non tumor-specific	nAS	yes
SARAF_LS017	chr8:30074055|30082847:-	SARAF	store-operated calcium entry associated regulatory factor	protein coding gene	no	ENST00000256255.10;ENST00000521265.5;ENST00000517569.1;ENST00000256255.10;ENST00000521265.5;ENST00000517569.1;ENST00000256255.10;ENST00000521265.5;ENST00000517569.1	70.738	73.059	123.954	0.995(9530)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SCG2_UP_LS0034	chr2:223720994|223723858:-	SCG2	secretogranin II	protein coding gene	no	.	7.208	0.148	0.000	0.079(761)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_DIAPH1_LS0136	chr5:141573706|141574025:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	3.500	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ST18_LS026	chr8:52206750|52210030:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000517456.5	2.066	0.000	0.875	0.005(52)	0(0)	0.015(258)	non tumor-specific	exon_skip	yes
UN_SCUBE2_LS0049	chr11:9116531|9120594:-	SCUBE2	signal peptide, CUB domain and EGF like domain containing 2	protein coding gene	yes	.	2.330	0.535	0.000	0.014(134)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_CLMN_LS0015	chr14:95194461|95194536:-	CLMN	calmin	protein coding gene	no	.	2.690	0.000	0.000	0.006(56)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_EEF1AKMT2_LS0013	chr10:124765604|124774675:-	EEF1AKMT2	EEF1A lysine methyltransferase 2	protein coding gene	no	.	3.397	1.804	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LIMS2_LS0076	chr2:127657562|127657650:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	2.082	0.471	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LEMD1_LS0023	chr1:205437213|205449868:-	LEMD1	LEM domain containing 1	protein coding gene	no	.	1.379	0.059	0.000	0.01(93)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
IL2RG_LS014	chrX:71109390|71111425:-	IL2RG	interleukin 2 receptor subunit gamma	protein coding gene	no	ENST00000456850.6;ENST00000456850.6	0.476	0.225	1.061	0.286(2738)	0.329(231)	0.156(2707)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGAP31_LS002	chr3:119324958|119365316:+	ARHGAP31	Rho GTPase activating protein 31	protein coding gene	no	ENST00000482743.1	0.026	0.010	0.682	0.303(2906)	0.516(362)	0.016(280)	non tumor-specific	nAS	yes
CEP170B_LS025	chr14:104889758|104892976:+	CEP170B	centrosomal protein 170B	protein coding gene	no	ENST00000556508.5;ENST00000414716.7;ENST00000453495.2	50.258	39.425	50.044	0.969(9281)	0.993(697)	0.958(16648)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SLC25A24P1_UP_LS0001	chr1:108223096|108223263:+	SLC25A24P1	SLC25A24 pseudogene 1	pseudogene	no	.	1.580	0.146	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
FGD4_LS019	chr12:32598586|32601278:+	FGD4	FYVE, RhoGEF and PH domain containing 4	protein coding gene	no	ENST00000534526.6;ENST00000531134.5;ENST00000551984.5;ENST00000427716.6;ENST00000546442.5;ENST00000525053.5	7.935	7.425	6.563	0.77(7376)	0.922(647)	0.934(16233)	non tumor-specific	exon_skip	yes
STEAP2_LS009	chr7:90211934|90225367:+	STEAP2	STEAP2 metalloreductase	protein coding gene	no	.;.;.	0.738	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FUS_LS027	chr16:31190141|31190275:+	FUS	FUS RNA binding protein	protein coding gene	yes	ENST00000254108.11;ENST00000566605.5;ENST00000380244.7;ENST00000487509.6;ENST00000568685.1;ENST00000474990.5	603.019	242.628	359.752	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MBD1_LS036	chr18:50275245|50275600:-	MBD1	methyl-CpG binding domain protein 1	protein coding gene	yes	ENST00000585672.5;ENST00000382948.9;ENST00000353909.7;ENST00000591416.5;ENST00000339998.10;ENST00000269468.9;ENST00000269471.9;ENST00000347968.7;ENST00000590208.5;ENST00000587605.5;ENST00000588937.5;ENST00000398493.5;ENST00000398488.5;ENST00000591535.5;ENST00000589733.1;ENST00000591661.1;ENST00000586679.1	24.941	17.536	42.932	0.991(9492)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_SUMF1_LS0051	chr3:4005876|4007031:+	SUMF1	sulfatase modifying factor 1	protein coding gene	no	.	4.612	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AC087499.2_LS010	chr17:20731310|20735736:+	AC087499.2	-	pseudogene	no	ENST00000441215.2	3.586	0.350	0.663	0.025(241)	0.003(2)	0.02(340)	non tumor-specific	nAS	yes
UN_RBBP8NL_LS0009	chr20:62414556|62415578:-	RBBP8NL	RBBP8 N-terminal like	protein coding gene	no	.	3.307	0.201	0.000	0.029(275)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_NUFIP2_UP_LS0001	chr17:29334529|29370147:-	NUFIP2	nuclear FMR1 interacting protein 2	protein coding gene	no	.	1.802	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PGAP1_LS0005	chr2:196838529|196840653:-	PGAP1	post-GPI attachment to proteins inositol deacylase 1	protein coding gene	no	.	0.629	0.115	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_RPSAP68_UP_LS0585	chr21:8401459|8445621:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	232.875	58.372	0.000	0.016(151)	0.019(13)	0(0)	non tumor-specific	nAS	no
NBPF20_LS046	chr1:145374973|145375688:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6	1.348	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	nAS	yes
FAM133B_LS014	chr7:92577195|92577655:-	FAM133B	family with sequence similarity 133 member B	protein coding gene	no	ENST00000438306.5;ENST00000445716.5;ENST00000415397.6;ENST00000481407.5;ENST00000427372.5;ENST00000494079.1	18.119	11.155	23.609	0.982(9404)	0.996(699)	0.977(16975)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KCNS3_LS0033	chr2:18010590|18011183:-	KCNS3	potassium voltage-gated channel modifier subfamily S member 3	protein coding gene	no	.	1.679	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF736_LS010	chr7:64311037|64312808:+	ZNF736	zinc finger protein 736	protein coding gene	no	ENST00000438373.5	0.033	0.001	0.662	0.006(54)	0.014(10)	0(5)	non tumor-specific	nAS	yes
UN_DCHS1_LS0015	chr11:6623706|6623746:-	DCHS1	dachsous cadherin-related 1	protein coding gene	no	.	14.624	2.791	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
RACGAP1_LS058	chr12:50019806|50021062:-	RACGAP1	Rac GTPase activating protein 1	protein coding gene	no	ENST00000427314.6	0.028	0.000	0.392	0(4)	0(0)	0.003(46)	non tumor-specific	exon_skip	yes
RPL5_LS011	chr1:92840639|92841766:+	RPL5	ribosomal protein L5	protein coding gene	yes	ENST00000644759.1;ENST00000645300.1;ENST00000370321.8;ENST00000645119.1;ENST00000497519.1;ENST00000644549.1	2578.219	1346.955	2737.372	0.931(8922)	0.947(665)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ZNF619_LS007	chr3:40482349|40482588:+	ZNF619	zinc finger protein 619	protein coding gene	no	ENST00000447116.6;ENST00000494154.6;ENST00000521353.5	0.171	0.092	0.761	0.121(1164)	0.174(122)	0.367(6373)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HNRNPL_LS0001	chr19:38836503|38836569:+	HNRNPL	heterogeneous nuclear ribonucleoprotein L	protein coding gene	no	.	6.568	0.274	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMIM19_LS0017	chr8:42548780|42552548:+	SMIM19	small integral membrane protein 19	protein coding gene	no	.	9.830	3.175	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_AC244205.1_LS0035	chr2:88857683|88860568:-	AC244205.1	-	lncRNA gene	no	.	87.387	89.587	0.000	0.693(6640)	0.786(552)	0(0)	non tumor-specific	nAS	no
PTPRG_LS027	chr3:62273081|62273698:+	PTPRG	protein tyrosine phosphatase receptor type G	protein coding gene	no	ENST00000295874.14;ENST00000474889.5;ENST00000475012.5	26.149	21.237	19.377	0.917(8783)	0.974(684)	0.939(16323)	non tumor-specific	nAS	yes
PAN2_LS034	chr12:56325454|56326313:-	PAN2	retinol dehydrogenase 14	protein coding gene	no	ENST00000425394.6;ENST00000610546.4;ENST00000551359.5;ENST00000440411.7;ENST00000257931.9;ENST00000548043.5;ENST00000547994.5;ENST00000549073.1;ENST00000550555.1	14.660	8.964	38.358	0.973(9319)	0.991(696)	0.978(16992)	non tumor-specific	nAS	yes
CHN2_LS028	chr7:29483975|29495952:+	CHN2	chimerin 2	protein coding gene	no	ENST00000410098.1	0.481	0.060	0.965	0.105(1003)	0.142(100)	0.169(2941)	non tumor-specific	nAS	yes
UN_AC007405.3_LS0008	chr2:170775750|170777147:+	AC007405.3	-	lncRNA gene	no	.	0.944	0.196	0.000	0.005(46)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_GLRX2_LS0014	chr1:193101204|193105230:-	GLRX2	glutaredoxin 2	protein coding gene	no	.	3.169	0.642	0.000	0.015(140)	0.024(17)	0(0)	non tumor-specific	alt_5prime	no
PFAS_LS024	chr17:8265125|8265288:+	PFAS	phosphoribosylformylglycinamidine synthase	protein coding gene	no	ENST00000580356.5;ENST00000314666.10	17.390	7.695	9.361	0.925(8859)	0.949(666)	0.97(16857)	non tumor-specific	exon_skip	yes
UN_ZFP36L1_LS0223	chr14:68790247|68790374:+	ZFP36L1	ZFP36 ring finger protein like 1	protein coding gene	no	.	1.425	0.338	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
TRAPPC9_LS003	chr8:139732202|139806133:-	TRAPPC9	trafficking protein particle complex 9	protein coding gene	no	ENST00000521700.5	0.087	0.063	0.765	0.607(5812)	0.523(367)	0.256(4446)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MIPOL1_LS0061	chr14:37422949|37476922:+	MIPOL1	mirror-image polydactyly 1	protein coding gene	no	.	1.466	0.177	0.000	0.024(229)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
ZNF862_LS013	chr7:149859526|149860383:+	ZNF862	zinc finger protein 862	protein coding gene	no	ENST00000223210.4;ENST00000478024.1	5.262	3.166	8.577	0.843(8073)	0.892(626)	0.969(16836)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC025287.4_LS002	chr16:75669556|75676987:-	AC025287.4	-	protein coding gene	no	ENST00000640173.1	1.322	0.000	0.533	0(3)	0(0)	0.001(9)	non tumor-specific	nAS	yes
SMARCA2_LS048	chr9:2110417|2115822:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000357248.8;ENST00000450198.6;ENST00000349721.7;ENST00000382194.6;ENST00000634760.1;ENST00000382203.5;ENST00000635739.1;ENST00000634925.1;ENST00000636157.1;ENST00000638139.1	70.527	77.707	57.998	0.981(9402)	0.996(699)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
DENND4A_LS010	chr15:65667703|65667925:-	DENND4A	DENN domain containing 4A	protein coding gene	no	ENST00000443035.7;ENST00000431932.6;ENST00000635620.1	20.673	14.672	17.086	0.945(9057)	0.993(697)	0.978(17008)	non tumor-specific	alt_3prime	yes
UN_AL031716.1_UP_LS0005	chr16:850822|850871:+	AL031716.1	-	lncRNA gene	no	.	2.518	0.123	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC005323.1_LS005	chr17:10613877|10621575:+	AC005323.1	-	lncRNA gene	no	ENST00000585303.1	2.419	1.233	0.941	0.001(14)	0.017(12)	0.043(744)	non tumor-specific	nAS	yes
GRAMD1B_LS014	chr11:123560652|123577367:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	ENST00000534764.1	0.082	0.205	1.731	0.182(1747)	0.217(152)	0.146(2541)	non tumor-specific	alt_5prime	yes
ST18_LS020	chr8:52172583|52180126:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000521824.5	0.928	0.000	0.926	0.001(11)	0(0)	0.004(61)	non tumor-specific	nAS	yes
ZMPSTE24_LS005	chr1:40259532|40260839:+	ZMPSTE24	zinc metallopeptidase STE24	protein coding gene	no	ENST00000479131.5;ENST00000472583.1	0.281	0.151	0.819	0.718(6882)	0.775(544)	0.401(6969)	non tumor-specific	exon_skip	yes
DLGAP1_LS030	chr18:4151287|4248569:-	DLGAP1	DLG associated protein 1	protein coding gene	no	ENST00000581550.5;ENST00000577430.1	0.175	0.016	0.763	0.102(981)	0.034(24)	0.004(62)	non tumor-specific	alt_3prime	yes
UN_SAR1AP4_UP_LS0004	chrX:75602867|75604918:+	SAR1AP4	secretion associated Ras related GTPase 1A pseudogene 4	pseudogene	no	.	3.807	0.069	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRPF8_LS016	chr17:1658381|1658526:-	PRPF8	pre-mRNA processing factor 8	protein coding gene	no	ENST00000304992.10;ENST00000572621.5	214.054	138.978	176.177	0.991(9492)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
ZNF582_LS004	chr19:56390501|56391744:-	ZNF582	zinc finger protein 582	protein coding gene	no	ENST00000589143.5;ENST00000301310.8;ENST00000619584.4;ENST00000586929.5;ENST00000587778.5;ENST00000593145.5;ENST00000589895.1	3.421	2.581	4.597	0.706(6761)	0.925(649)	0.935(16247)	non tumor-specific	nAS	yes
UN_LINC01322_LS0061	chr3:165499287|165511511:+	LINC01322	long intergenic non-protein coding RNA 1322	lncRNA gene	no	.	4.184	0.765	0.000	0.059(568)	0.016(11)	0(0)	non tumor-specific	nAS	no
CNTN6_LS022	chr3:1352451|1372299:+	CNTN6	contactin 6	protein coding gene	no	ENST00000446702.6;ENST00000397479.6;ENST00000350110.2	5.185	2.755	1.894	0.135(1292)	0.256(180)	0.273(4752)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FGFR1OP_LS0007	chr6:167019264|167019286:-	FGFR1OP	centrosomal protein 43	protein coding gene	yes	.	3.701	0.373	0.000	0.023(224)	0.017(12)	0(0)	non tumor-specific	nAS	no
KIT_LS006	chr4:54707287|54709424:+	KIT	KIT proto-oncogene, receptor tyrosine kinase	protein coding gene	yes	ENST00000412167.6;ENST00000288135.5	22.126	17.096	5.185	0.549(5261)	0.838(588)	0.784(13632)	non tumor-specific	nAS	yes
LRIG3_LS021	chr12:58890796|58913982:-	LRIG3	leucine rich repeats and immunoglobulin like domains 3	protein coding gene	yes	ENST00000379141.8;ENST00000320743.7;ENST00000433272.6;ENST00000552267.1	21.634	18.905	15.488	0.887(8503)	0.979(687)	0.889(15450)	non tumor-specific	nAS	yes
UN_PDXK_LS0061	chr21:43760687|43760731:-	PDXK	pyridoxal kinase	protein coding gene	no	.	3.995	1.266	0.000	0.008(76)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_SP140L_LS0039	chr2:230403323|230403457:-	SP140L	SP140 nuclear body protein like	protein coding gene	no	.	1.309	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ERCC1_LS011	chr19:45416897|45419098:-	ERCC1	ERCC excision repair 1, endonuclease non-catalytic subunit	protein coding gene	no	ENST00000300853.7;ENST00000423698.6;ENST00000340192.11;ENST00000590701.5;ENST00000591636.5;ENST00000589165.5;ENST00000013807.9;ENST00000587888.5;ENST00000589381.5;ENST00000592083.5;ENST00000592905.5;ENST00000592023.5;ENST00000588300.1	141.020	71.469	106.143	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NFAT5_LS0022	chr16:69626528|69631671:+	NFAT5	nuclear factor of activated T cells 5	protein coding gene	no	.	3.567	0.221	0.000	0.006(58)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_AHI1_LS0064	chr6:135442714|135448290:-	AHI1	Abelson helper integration site 1	protein coding gene	yes	.	4.273	0.376	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AP003108.2_LS0027	chr11:61438120|61445941:+	AP003108.2	-	protein coding gene	no	.	8.152	0.700	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPCN2_LS025	chr11:69078601|69078734:+	TPCN2	two pore segment channel 2	protein coding gene	no	ENST00000294309.7;ENST00000637504.1;ENST00000535009.5;ENST00000635811.1;ENST00000542467.1;ENST00000637342.1;ENST00000442692.2;ENST00000637084.1	20.349	10.872	28.527	0.953(9129)	0.987(693)	0.979(17016)	non tumor-specific	exon_skip	yes
LINC01905_LS002	chr18:56042344|56096075:+	LINC01905	long intergenic non-protein coding RNA 1905	lncRNA gene	no	ENST00000585684.5	0.168	0.024	0.812	0.036(345)	0.016(11)	0.006(108)	non tumor-specific	nAS	yes
NCKAP5_LS003	chr2:132673305|132731737:-	NCKAP5	NCK associated protein 5	protein coding gene	no	ENST00000639875.1	2.172	0.176	0.701	0(1)	0.001(1)	0.041(713)	non tumor-specific	exon_skip	yes
UN_NPM1_LS0004	chr5:171387571|171387895:+	NPM1	nucleophosmin 1	protein coding gene	yes	.	2.062	0.211	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
MMD_LS011	chr17:55414232|55421670:-	MMD	monocyte to macrophage differentiation associated	protein coding gene	no	ENST00000262065.7;ENST00000649377.1;ENST00000571578.1	6.652	6.038	8.875	0.917(8784)	0.967(679)	0.96(16692)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM38B_LS006	chr9:105705753|105721537:+	TMEM38B	transmembrane protein 38B	protein coding gene	no	ENST00000374692.7;ENST00000374688.5;ENST00000435034.5	31.864	26.605	9.674	0.964(9232)	0.996(699)	0.967(16806)	non tumor-specific	exon_skip	yes
UN_LINC01052_UP_LS0014	chr13:64223270|64245403:+	LINC01052	long intergenic non-protein coding RNA 1052	lncRNA gene	no	.	3.527	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDX49_LS0015	chr19:18927833|18927965:+	DDX49	DEAD-box helicase 49	protein coding gene	no	.	5.535	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
AL591485.1_LS043	chr6:8925931|8937391:+	AL591485.1	-	no	no	ENST00000644364.1	0.962	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_IPO5_LS0013	chr13:98007587|98008059:+	IPO5	importin 5	protein coding gene	no	.	0.553	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_DIAPH1_LS0122	chr5:141573664|141573776:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	1.489	0.581	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MEGF6_LS014	chr1:3496783|3496988:-	MEGF6	multiple EGF like domains 6	protein coding gene	no	ENST00000356575.8;ENST00000485002.6	8.780	5.391	18.674	0.539(5165)	0.735(516)	0.953(16563)	non tumor-specific	exon_skip	yes
UN_LINC01681_UP_LS0006	chr1:170121783|170155869:+	LINC01681	long intergenic non-protein coding RNA 1681	lncRNA gene	no	.	1.467	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
EGFLAM_LS031	chr5:38458394|38462908:+	EGFLAM	EGF like, fibronectin type III and laminin G domains	protein coding gene	no	ENST00000354891.7;ENST00000322350.9;ENST00000336740.10;ENST00000397202.6;ENST00000397210.7;ENST00000506135.5;ENST00000508131.5;ENST00000514476.1	20.985	7.978	15.162	0.887(8495)	0.923(648)	0.911(15828)	non tumor-specific	exon_skip	yes
UN_FBXL18_LS0030	chr7:5477135|5480811:-	FBXL18	F-box and leucine rich repeat protein 18	protein coding gene	no	.	1.821	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
OLFM3_LS003	chr1:101806182|101825026:-	OLFM3	olfactomedin 3	protein coding gene	no	ENST00000370103.8;ENST00000338858.9	7.487	3.080	4.376	0.077(738)	0.137(96)	0.249(4320)	non tumor-specific	exon_skip	yes
DPYSL3_LS003	chr5:147395721|147399082:-	DPYSL3	dihydropyrimidinase like 3	protein coding gene	no	ENST00000520473.1	0.456	0.331	0.665	0.123(1176)	0.111(78)	0.11(1913)	non tumor-specific	exon_skip	yes
NFKBIA_LS001	chr14:35402060|35402394:-	NFKBIA	NFKB inhibitor alpha	protein coding gene	no	ENST00000216797.9;ENST00000554001.5;ENST00000557140.5;ENST00000557389.1;ENST00000555371.1	369.821	296.279	374.092	0.954(9136)	0.969(680)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CPNE8_LS0010	chr12:38677498|38685490:-	CPNE8	copine 8	protein coding gene	no	.	6.414	2.479	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
SIK1_LS001	chr21:43417117|43417543:-	SIK1	salt inducible kinase 1	protein coding gene	yes	ENST00000270162.7	8.930	11.311	1.426	0.856(8205)	0.926(650)	0.379(6581)	non tumor-specific	intron_retention	yes
DNASE1_LS016	chr16:3656185|3656638:+	DNASE1	deoxyribonuclease 1	protein coding gene	no	ENST00000570769.5;ENST00000576050.5;ENST00000407479.5;ENST00000246949.9;ENST00000571460.5;ENST00000570376.5;ENST00000573804.5;ENST00000570807.5;ENST00000572237.1	14.885	28.665	6.363	0.939(8992)	0.89(625)	0.961(16699)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CPNE3_LS012	chr8:86521714|86528536:+	CPNE3	copine 3	protein coding gene	no	ENST00000523469.5	0.051	0.004	0.578	0.034(323)	0.034(24)	0.034(587)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SHLD2_LS0116	chr10:87158155|87163979:+	SHLD2	shieldin complex subunit 2	protein coding gene	no	.	0.981	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WWC3_LS0045	chrX:10139540|10141199:+	WWC3	WWC family member 3	protein coding gene	no	.	4.841	1.786	0.000	0.008(75)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_USF2_LS0053	chr19:35279223|35279270:-	USF2	upstream transcription factor 2, c-fos interacting	protein coding gene	no	.	2.835	0.133	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SETDB2_LS0018	chr13:49463167|49464021:+	SETDB2	SET domain bifurcated histone lysine methyltransferase 2	protein coding gene	no	.	1.035	0.095	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KDM1A_LS027	chr1:23081573|23083179:+	KDM1A	lysine demethylase 1A	protein coding gene	no	.;.	8.435	2.687	0.000	0.007(71)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_SORCS2_LS0044	chr4:7535096|7572698:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	.	1.747	0.217	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CLDN4_LS0170	chr7:73831775|73831984:-	CLDN4	claudin 4	protein coding gene	no	.	13.113	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ERVMER61-1_LS0046	chr1:187329060|187407657:+	ERVMER61-1	endogenous retrovirus group MER61 member 1	lncRNA gene	no	.	1.598	0.336	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
MUC20_LS009	chr3:195726572|195729648:+	MUC20	mucin 20, cell surface associated	protein coding gene	no	ENST00000447234.6;ENST00000436408.5;ENST00000320736.10;ENST00000445522.6;ENST00000498018.1;ENST00000423938.1	96.797	46.197	13.033	0.966(9252)	0.993(697)	0.963(16734)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TAPBP_LS0189	chr6:33304423|33313284:+	TAPBP	TAP binding protein	protein coding gene	no	.	3.083	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA6_LS0015	chr1:204221553|204221590:+	PLEKHA6	pleckstrin homology domain containing A6	protein coding gene	no	.	5.241	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ANK1_LS033	chr8:41694102|41694592:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000347528.8;ENST00000289734.12;ENST00000265709.13;ENST00000520299.5;ENST00000524227.5	2.453	0.708	1.710	0.32(3064)	0.168(118)	0.547(9507)	non tumor-specific	nAS	yes
COL14A1_LS016	chr8:120208361|120209756:+	COL14A1	collagen type XIV alpha 1 chain	protein coding gene	no	ENST00000498051.6;ENST00000537875.2;ENST00000309791.8;ENST00000297848.7;ENST00000432943.6;ENST00000523142.5;ENST00000434620.5	14.089	20.077	10.455	0.705(6754)	0.953(669)	0.827(14378)	non tumor-specific	nAS	yes
LINC02002_LS004	chr17:22245399|22245826:-	LINC02002	long intergenic non-protein coding RNA 2002	lncRNA gene	no	ENST00000578977.1	1.278	0.000	0.565	0(1)	0(0)	0(5)	non tumor-specific	nAS	yes
PLEKHH1_LS022	chr14:67575472|67575823:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5	6.767	6.531	5.749	0.709(6790)	0.699(491)	0.823(14312)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC024597.1_LS001	chr10:62289647|62302326:+	AC024597.1	-	lncRNA gene	no	ENST00000442753.1	0.510	0.219	0.818	0.027(255)	0.038(27)	0.042(727)	non tumor-specific	nAS	yes
UN_IGHE_UP_LS0113	chr14:105624781|105643462:-	IGHE	immunoglobulin heavy constant epsilon	no	no	.	268.185	14.599	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SRD5A1_LS0011	chr5:6653629|6656078:+	SRD5A1	steroid 5 alpha-reductase 1	protein coding gene	no	.	1.698	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TUSC1_LS0011	chr9:25678233|25678408:-	TUSC1	tumor suppressor candidate 1	protein coding gene	yes	.	3.001	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SSBP3_LS0058	chr1:54258149|54277189:-	SSBP3	single stranded DNA binding protein 3	protein coding gene	no	.	4.494	0.308	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_CSK_LS0014	chr15:74789937|74798233:+	CSK	C-terminal Src kinase	protein coding gene	no	.	1.841	1.004	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
PITPNM3_LS017	chr17:6477213|6477975:-	PITPNM3	PITPNM family member 3	protein coding gene	no	ENST00000421306.7;ENST00000262483.12;ENST00000572795.1	4.799	7.658	4.435	0.495(4739)	0.799(561)	0.794(13805)	non tumor-specific	nAS	yes
UN_STK38L_LS0014	chr12:27283609|27297710:+	STK38L	serine/threonine kinase 38 like	protein coding gene	no	.	0.981	0.144	0.000	0.015(139)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LINC02051_LS001	chr3:186477130|186478085:+	LINC02051	long intergenic non-protein coding RNA 2051	lncRNA gene	no	ENST00000456535.1	0.314	0.053	0.883	0.093(888)	0.011(8)	0.041(710)	non tumor-specific	nAS	yes
UN_AC010967.1_LS0006	chr2:52732777|52793634:-	AC010967.1	-	lncRNA gene	no	.	3.791	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HERC2P5_LS024	chr16:32769879|32770587:+	HERC2P5	hect domain and RLD 2 pseudogene 5	pseudogene	no	ENST00000562687.6	1.678	0.000	0.873	0.001(6)	0(0)	0.233(4050)	non tumor-specific	nAS	yes
FAM71F1_LS010	chr7:128723318|128724769:+	FAM71F1	family with sequence similarity 71 member F1	protein coding gene	no	ENST00000484425.6;ENST00000469348.5;ENST00000471558.5	0.172	0.000	0.720	0.008(79)	0(0)	0.005(87)	non tumor-specific	exon_skip	yes
LCLAT1_LS020	chr2:30525755|30533116:+	LCLAT1	lysocardiolipin acyltransferase 1	protein coding gene	no	ENST00000466477.5;ENST00000465200.5;ENST00000379509.7;ENST00000319406.8;ENST00000488144.5;ENST00000465538.5;ENST00000309052.8;ENST00000478015.5;ENST00000476038.5;ENST00000497423.1;ENST00000476535.1	5.193	3.068	2.944	0.881(8437)	0.947(665)	0.88(15299)	non tumor-specific	exon_skip	yes
UN_SMYD3_LS0036	chr1:245858675|245863799:+	SMYD3	SET and MYND domain containing 3	protein coding gene	no	.	2.514	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
NR4A1_LS013	chr12:52051568|52052474:+	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	ENST00000562373.1	0.205	0.241	1.183	0.117(1124)	0.34(239)	0.296(5152)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GTF3C5_LS002	chr9:133030910|133050783:+	GTF3C5	general transcription factor IIIC subunit 5	protein coding gene	no	.;.	4.979	0.512	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SEPT10_LS006	chr2:109545542|109546050:-	SEPT10	septin 10	protein coding gene	no	ENST00000356688.8;ENST00000437928.5	0.522	0.722	0.721	0.108(1036)	0.17(119)	0.259(4498)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_AL121944.1_UP_LS0012	chr6:28120676|28123084:-	AL121944.1	-	lncRNA gene	no	.	2.187	0.577	0.000	0.047(449)	0.026(18)	0(0)	non tumor-specific	nAS	no
YIF1B_LS015	chr19:38309328|38309405:-	YIF1B	Yip1 interacting factor homolog B, membrane trafficking protein	protein coding gene	no	ENST00000592694.5;ENST00000337679.12;ENST00000392124.7;ENST00000339413.10;ENST00000329420.12;ENST00000591784.5;ENST00000591755.5;ENST00000588002.5;ENST00000585563.5;ENST00000589247.1;ENST00000587039.1	75.999	33.577	60.188	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ANO7_LS0030	chr2:241218816|241223186:+	ANO7	anoctamin 7	protein coding gene	no	.	2.728	0.138	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_PMS2P5_UP_LS0009	chr7:74880405|74881884:+	PMS2P5	PMS1 homolog 2, mismatch repair system component pseudogene 5	pseudogene	no	.	2.073	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
C3orf38_LS003	chr3:88153471|88156021:+	C3orf38	chromosome 3 open reading frame 38	protein coding gene	no	ENST00000318887.7	23.388	13.835	10.579	0.974(9335)	0.986(692)	0.975(16955)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HYDIN2_LS0036	chr1:146533384|146537162:+	HYDIN2	HYDIN axonemal central pair apparatus protein 2 (pseudogene)	pseudogene	no	.	1.092	0.400	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ABCC3_LS0026	chr17:50666527|50667554:+	ABCC3	ATP binding cassette subfamily C member 3	protein coding gene	no	.	2.441	0.004	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCDC18-AS1_LS023	chr1:93318228|93324635:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	ENST00000451302.6;ENST00000415150.5	0.236	0.326	1.861	0.288(2758)	0.312(219)	0.722(12542)	non tumor-specific	nAS	yes
FRMD5_LS008	chr15:43884795|43885668:-	FRMD5	FERM domain containing 5	protein coding gene	no	ENST00000421674.5	1.417	0.047	1.265	0.068(647)	0.009(6)	0.199(3467)	non tumor-specific	alt_5prime	yes
UN_MKRN2_LS0014	chr3:12570484|12572069:+	MKRN2	makorin ring finger protein 2	protein coding gene	no	.	3.387	0.065	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
GOLGA8B_LS032	chr15:34566473|34582750:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	ENST00000569811.1	0.277	0.059	0.620	0.053(512)	0.044(31)	0.029(508)	non tumor-specific	nAS	yes
UN_EHD4_LS0021	chr15:41900216|41900248:+	EHD4	EH domain containing 4	protein coding gene	no	.	2.409	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC011294.1_UP_LS0008	chr7:46786090|46786174:-	AC011294.1	-	lncRNA gene	no	.	0.828	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
HK3_LS009	chr5:176887121|176891037:-	HK3	hook microtubule tethering protein 3	protein coding gene	no	ENST00000509717.5	0.376	0.058	0.692	0.046(439)	0.067(47)	0.014(235)	non tumor-specific	nAS	yes
ASS1_LS005	chr9:130444995|130452224:+	ASS1	argininosuccinate synthase 1	protein coding gene	yes	ENST00000352480.9;ENST00000352480.9	25.105	74.133	49.621	0.93(8906)	0.967(679)	0.963(16734)	non tumor-specific	alt_3prime;exon_skip	yes
AC024958.1_LS003	chr8:24514664|24514786:-	AC024958.1	-	lncRNA gene	no	ENST00000519364.5;ENST00000519893.1	1.241	0.116	0.712	0(4)	0.001(1)	0.007(125)	non tumor-specific	nAS	yes
SARAF_LS007	chr8:30070059|30073877:-	SARAF	store-operated calcium entry associated regulatory factor	protein coding gene	no	ENST00000256255.10;ENST00000518174.5;ENST00000521265.5;ENST00000522794.1;ENST00000522055.1;ENST00000523761.1	319.695	284.846	172.878	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RAB11FIP1_LS0033	chr8:37862838|37862922:-	RAB11FIP1	RAB11 family interacting protein 1	protein coding gene	no	.	3.946	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	intron_retention	no
MYH16_LS003	chr7:99258390|99260164:+	MYH16	myosin heavy chain 16 pseudogene	pseudogene	no	ENST00000439784.7;ENST00000453194.2	0.230	0.094	0.652	0.002(20)	0.003(2)	0.037(641)	non tumor-specific	nAS	yes
LONP1_LS016	chr19:5705992|5707697:-	LONP1	lon peptidase 1, mitochondrial	protein coding gene	no	ENST00000590206.1	15.779	5.305	0.658	0.079(753)	0.061(43)	0.03(521)	non tumor-specific	exon_skip	yes
UN_RNA5SP225_UP_LS0008	chr6:153363302|153367036:+	RNA5SP225	RNA, 5S ribosomal pseudogene 225	no	no	.	1.925	1.779	0.000	0.003(31)	0.036(25)	0(0)	non tumor-specific	nAS	no
FAM181A-AS1_LS005	chr14:93922381|93923401:-	FAM181A-AS1	FAM181A antisense RNA 1	lncRNA gene	no	ENST00000554742.1	2.131	0.000	0.916	0.001(14)	0(0)	0.058(1014)	non tumor-specific	nAS	yes
FNIP2_LS022	chr4:158891646|158895750:+	FNIP2	folliculin interacting protein 2	protein coding gene	no	ENST00000264433.10	18.059	20.183	11.580	0.915(8766)	0.977(686)	0.967(16804)	non tumor-specific	exon_skip	yes
FLVCR1_LS008	chr1:212864519|212870054:+	FLVCR1	FLVCR heme transporter 1	protein coding gene	no	ENST00000579295.1	0.088	0.117	0.810	0.198(1894)	0.195(137)	0.335(5817)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC097634.4_LS0049	chr3:71198392|71245006:-	AC097634.4	-	protein coding gene	no	.	0.871	0.467	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_AL512329.2_UP_LS0014	chr6:1549178|1552381:-	AL512329.2	-	lncRNA gene	no	.	2.645	0.526	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC018742.1_LS005	chr2:21799478|21951632:+	AC018742.1	-	lncRNA gene	no	ENST00000435237.1	1.166	0.080	0.802	0.008(74)	0.001(1)	0.081(1407)	non tumor-specific	nAS	yes
GALNT14_LS006	chr2:30924263|30924740:-	GALNT14	polypeptide N-acetylgalactosaminyltransferase 14	protein coding gene	no	ENST00000324589.9;ENST00000349752.9;ENST00000406653.5;ENST00000430167.1;ENST00000324589.9;ENST00000349752.9;ENST00000406653.5;ENST00000430167.1	37.746	28.593	3.373	0.743(7121)	0.724(508)	0.76(13204)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SMG1_LS066	chr16:18892354|18896793:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	ENST00000565324.5;ENST00000561947.5;ENST00000330588.4	0.127	0.085	0.737	0.542(5196)	0.617(433)	0.217(3770)	non tumor-specific	exon_skip	yes
UN_ZNF91_LS0056	chr19:23359833|23360338:+	ZNF91	zinc finger protein 91	protein coding gene	no	.	4.360	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC41_LS004	chr1:46279257|46279492:-	LRRC41	leucine rich repeat containing 41	protein coding gene	no	ENST00000496156.5;ENST00000617190.4;ENST00000617760.4;ENST00000343304.10;ENST00000615587.4	166.883	95.081	97.908	0.998(9565)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_TAF15_LS0267	chr17:35844818|35844873:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	24.833	0.416	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DZIP1_LS0022	chr13:95633321|95636905:-	DZIP1	DAZ interacting zinc finger protein 1	protein coding gene	no	.	0.543	0.030	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_MYH14_LS0097	chr19:50293687|50295035:+	MYH14	myosin heavy chain 14	protein coding gene	no	.	3.766	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PTPN13_LS038	chr4:86774531|86775171:+	PTPN13	protein tyrosine phosphatase non-receptor type 13	protein coding gene	yes	ENST00000427191.6;ENST00000436978.5;ENST00000316707.10;ENST00000411767.6;ENST00000511467.1	21.125	25.649	21.736	0.836(8013)	0.899(631)	0.936(16269)	non tumor-specific	nAS	yes
UN_HOPX_UP_LS0012	chr4:56687912|56693679:-	HOPX	HOP homeobox	protein coding gene	yes	.	3.612	0.259	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCDC30_LS026	chr1:42556405|42566296:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000340612.5;ENST00000428554.6;ENST00000509712.6;ENST00000471390.5;ENST00000342022.8	0.387	0.030	0.768	0.005(49)	0.009(6)	0.091(1586)	non tumor-specific	exon_skip	yes
UN_SEC61A1_LS0086	chr3:128070837|128071019:-	SEC61A1	SEC61 translocon subunit alpha 1	protein coding gene	no	.	6.314	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SLC38A9_LS013	chr5:55656774|55657970:-	SLC38A9	solute carrier family 38 member 9	protein coding gene	no	ENST00000524030.1	0.056	0.025	0.626	0.054(514)	0.053(37)	0.014(235)	non tumor-specific	nAS	yes
UN_AC106886.5_LS0080	chr16:30724352|30724476:-	AC106886.5	-	protein coding gene	no	.	1.266	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPSAP58_LS0060	chr19:23827588|23827884:-	RPSAP58	ribosomal protein SA pseudogene 58	pseudogene	no	.	8.556	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PARPBP_LS022	chr12:102164608|102165729:+	PARPBP	PARP1 binding protein	protein coding gene	no	ENST00000541394.5;ENST00000543784.5;ENST00000327680.6;ENST00000392911.6;ENST00000417507.6;ENST00000412715.3	4.811	0.960	1.233	0.719(6893)	0.53(372)	0.554(9630)	non tumor-specific	exon_skip	yes
FUK_LS034	chr16:70474339|70474528:+	FUK	fucose kinase	protein coding gene	no	ENST00000288078.10;ENST00000571514.5;ENST00000378912.6	11.923	8.377	6.883	0.957(9169)	0.976(685)	0.97(16867)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAPK8IP3_LS0026	chr16:1746856|1747029:+	MAPK8IP3	mitogen-activated protein kinase 8 interacting protein 3	protein coding gene	no	.	1.386	0.181	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
EFCAB3_LS001	chr17:62344136|62350674:+	EFCAB3	EF-hand calcium binding domain 3	protein coding gene	no	ENST00000635817.2	5.174	0.000	0.752	0.001(5)	0(0)	0.004(66)	non tumor-specific	nAS	yes
UN_ABCG2_LS0022	chr4:88202857|88230994:-	ABCG2	ATP binding cassette subfamily G member 2 (Junior blood group)	protein coding gene	yes	.	1.552	0.209	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SIX3_LS001	chr2:44942910|44944568:+	SIX3	SIX homeobox 3	protein coding gene	no	ENST00000260653.4	2.352	0.298	1.995	0.224(2142)	0.134(94)	0.207(3601)	non tumor-specific	nAS	yes
VPS29_LS009	chr12:110496203|110496823:-	VPS29	VPS29 retromer complex component	protein coding gene	no	ENST00000553128.5	0.026	0.013	0.683	0.233(2237)	0.189(133)	0.148(2565)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ANAPC5_LS035	chr12:121342069|121345839:-	ANAPC5	anaphase promoting complex subunit 5	protein coding gene	no	ENST00000441917.6;ENST00000534976.5;ENST00000541887.5;ENST00000261819.7;ENST00000541652.5;ENST00000544442.5	97.126	52.203	103.836	0.992(9500)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
IGLV3-25_LS001	chr22:22686814|22686981:+	IGLV3-25	immunoglobulin lambda variable 3-25	no	no	ENST00000390305.2	94.731	83.502	5.665	0.753(7214)	0.826(580)	0.608(10564)	non tumor-specific	nAS	yes
ANKRD28_LS033	chr3:15751820|15756484:-	ANKRD28	ankyrin repeat domain 28	protein coding gene	no	ENST00000476472.5	0.046	0.010	0.592	0.025(241)	0.017(12)	0.012(201)	non tumor-specific	alt_5prime	yes
UN_LINC00662_LS0064	chr19:27774792|27793000:-	LINC00662	long intergenic non-protein coding RNA 662	lncRNA gene	no	.	2.306	0.086	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMEM62_LS0009	chr15:43138619|43148755:+	TMEM62	transmembrane protein 62	protein coding gene	no	.	6.512	0.179	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_JUP_LS0158	chr17:41755548|41755748:+	JUP	junction plakoglobin	protein coding gene	yes	.	20.295	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PBX3_LS0016	chr9:125797465|125800778:+	PBX3	PBX homeobox 3	protein coding gene	no	.	2.881	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CRLF3_LS0057	chr17:30791213|30792464:+	CRLF3	cytokine receptor like factor 3	protein coding gene	no	.	3.150	0.333	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	nAS	no
ADGRL3_LS017	chr4:61912757|61934840:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000512091.6;ENST00000514591.5;ENST00000509896.5;ENST00000511324.5;ENST00000506700.5;ENST00000507164.5;ENST00000508693.5;ENST00000507625.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5	4.529	3.541	2.678	0.175(1676)	0.301(211)	0.645(11209)	non tumor-specific	exon_skip	yes
BRD4_LS008	chr19:15244600|15244710:-	BRD4	bromodomain containing 4	protein coding gene	yes	ENST00000263377.6	33.616	15.795	19.370	0.934(8947)	0.937(658)	0.978(17005)	non tumor-specific	exon_skip;intron_retention	yes
DHCR24-DT_LS004	chr1:54887976|54888500:+	DHCR24-DT	DHCR24 divergent transcript	lncRNA gene	no	ENST00000436033.1	0.091	0.074	0.711	0.032(302)	0.017(12)	0.005(93)	non tumor-specific	nAS	yes
IQGAP2_LS001	chr5:76403591|76461570:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000274364.10	5.780	6.483	2.160	0.569(5453)	0.813(571)	0.611(10615)	non tumor-specific	exon_skip	yes
UN_PEPD_LS0041	chr19:33512776|33521434:-	PEPD	peptidase D	protein coding gene	no	.	2.782	0.158	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KLHL14_LS0018	chr18:32769967|32772054:+	KLHL14	kelch like family member 14	protein coding gene	no	.	1.013	0.259	0.000	0.021(205)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_OLA1_LS0030	chr2:174182640|174223033:-	OLA1	Obg like ATPase 1	protein coding gene	no	.	1.630	0.236	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_ABI1_LS0019	chr10:26787234|26823138:-	ABI1	abl interactor 1	protein coding gene	no	.	5.475	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PYGL_LS011	chr14:50914815|50915336:-	PYGL	glycogen phosphorylase L	protein coding gene	no	ENST00000532462.5;ENST00000544180.6;ENST00000216392.7	72.595	31.383	34.540	0.982(9412)	0.994(698)	0.976(16971)	non tumor-specific	alt_3prime;exon_skip	yes
PAX8_LS034	chr2:113241726|113242008:-	PAX8	paired box 8	protein coding gene	yes	ENST00000263335.11;ENST00000397647.7;ENST00000348715.9;ENST00000263334.9;ENST00000429538.7;ENST00000467778.5;ENST00000554830.2	64.209	61.711	0.912	0.251(2403)	0.322(226)	0.232(4031)	non tumor-specific	alt_3prime;intron_retention	yes
UN_COL1A1_LS0759	chr17:50194183|50194573:-	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	1747.080	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_MARS_LS0033	chr12:57494621|57506966:+	MARS	methionyl-tRNA synthetase 1	protein coding gene	no	.	3.181	1.046	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ECHDC2_LS0030	chr1:52912855|52913895:-	ECHDC2	enoyl-CoA hydratase domain containing 2	protein coding gene	no	.	1.819	0.728	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_INTS4P1_UP_LS0007	chr7:65098832|65108249:+	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	3.267	0.183	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DGKD_LS0065	chr2:233463602|233463688:-	DGKD	diacylglycerol kinase delta	protein coding gene	no	.	21.211	0.386	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDH5A1_LS008	chr6:24515310|24520401:+	ALDH5A1	aldehyde dehydrogenase 5 family member A1	protein coding gene	no	ENST00000357578.7;ENST00000491546.5;ENST00000348925.2	19.594	17.916	8.293	0.952(9124)	0.993(697)	0.958(16644)	non tumor-specific	exon_skip	yes
CYLC2_LS004	chr9:103004851|103004969:+	CYLC2	cylicin 2	protein coding gene	no	ENST00000612124.4;ENST00000374798.7;ENST00000487798.5	6.627	0.000	0.692	0(1)	0(0)	0.015(257)	non tumor-specific	nAS	yes
MINDY4B_LS010	chr3:150901456|150903249:-	MINDY4B	MINDY family member 4B	protein coding gene	no	ENST00000474598.1	5.318	0.172	1.083	0.022(213)	0.02(14)	0.034(587)	non tumor-specific	nAS	yes
UN_IFITM9P_UP_LS0025	chr11:69434744|69444652:-	IFITM9P	interferon induced transmembrane protein 9 pseudogene	pseudogene	no	.	3.459	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
GABRG2_LS004	chr5:162067641|162093828:+	GABRG2	gamma-aminobutyric acid type A receptor subunit gamma2	protein coding gene	no	ENST00000640985.1	0.366	0.000	0.828	0(1)	0(0)	0.007(129)	non tumor-specific	nAS	yes
SNHG14_LS144	chr15:25268453|25269605:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000453082.5;ENST00000452731.5	4.180	1.270	2.682	0.152(1457)	0.071(50)	0.512(8901)	non tumor-specific	nAS	yes
UN_PPP2R2D_LS0022	chr10:131935006|131937852:+	PPP2R2D	protein phosphatase 2 regulatory subunit Bdelta	protein coding gene	no	.	1.387	0.304	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_PAX8_LS0044	chr2:113217885|113217991:+	PAX8	paired box 8	protein coding gene	yes	.	17.685	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MUC19_LS013	chr12:40419233|40420207:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9	5.273	0.000	4.701	0.001(11)	0(0)	0.008(133)	non tumor-specific	nAS	yes
UN_AL355102.2_LS0163	chr14:96243248|96243371:-	AL355102.2	-	protein coding gene	no	.	2.646	0.426	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
MUC17_LS058	chr7:101050635|101051613:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	ENST00000306151.8	49.106	36.112	1.794	0.082(786)	0.074(52)	0.046(793)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MAPKAPK5_LS0025	chr12:111886036|111888492:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	.	8.697	1.833	0.000	0.009(87)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
HCN3_LS003	chr1:155282840|155284539:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	ENST00000467204.1	0.684	0.207	0.742	0.147(1413)	0.043(30)	0.222(3855)	non tumor-specific	alt_3prime;exon_skip	yes
HERC2P4_LS019	chr16:32171676|32174383:-	HERC2P4	hect domain and RLD 2 pseudogene 4	pseudogene	no	ENST00000566902.5;ENST00000566591.1	0.750	0.203	0.825	0.181(1735)	0.144(101)	0.275(4782)	non tumor-specific	nAS	yes
BVES_LS001	chr6:105101213|105115686:-	BVES	blood vessel epicardial substance	protein coding gene	no	ENST00000314641.9;ENST00000336775.9;ENST00000446408.2	4.430	4.304	5.231	0.502(4814)	0.744(522)	0.827(14382)	non tumor-specific	nAS	yes
UN_STOX2_UP_LS0005	chr4:183730291|183730598:+	STOX2	storkhead box 2	protein coding gene	no	.	2.369	0.169	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYH8_LS018	chr17:10401785|10404330:-	MYH8	myosin heavy chain 8	protein coding gene	no	ENST00000403437.2	12.498	1.138	2.473	0.023(219)	0.02(14)	0.055(954)	non tumor-specific	nAS	yes
UN_ITGA9-AS1_UP_LS0002	chr3:38029636|38029901:-	ITGA9-AS1	ITGA9 antisense RNA 1	lncRNA gene	no	.	0.932	0.029	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ADGRG1_LS0072	chr16:57651585|57661875:-	ADGRG1	adhesion G protein-coupled receptor G1	protein coding gene	no	.	3.530	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
FGFR2_LS025	chr10:121518829|121519979:-	FGFR2	fibroblast growth factor receptor 2	protein coding gene	yes	ENST00000604236.5;ENST00000369059.5;ENST00000457416.6;ENST00000360144.7;ENST00000369056.5;ENST00000369058.7;ENST00000490349.5	9.960	11.739	6.752	0.661(6332)	0.937(658)	0.467(8109)	non tumor-specific	alt_3prime;exon_skip	yes
UN_URI1_LS0032	chr19:30012541|30014948:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	.	8.369	0.984	0.000	0.027(257)	0.014(10)	0(0)	non tumor-specific	nAS	no
ABI3BP_LS008	chr3:100774673|100775207:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000471714.5;ENST00000470336.5;ENST00000284322.9;ENST00000495591.5;ENST00000487012.5;ENST00000486770.5;ENST00000469764.1	4.064	9.654	40.936	0.784(7513)	0.966(678)	0.917(15946)	non tumor-specific	exon_skip	yes
CTSH_LS033	chr15:78939166|78944891:-	CTSH	cathepsin H	protein coding gene	no	.;.	74.793	13.858	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC01089_LS006	chr12:121799657|121799847:-	LINC01089	long intergenic non-protein coding RNA 1089	lncRNA gene	no	ENST00000535643.5;ENST00000543334.5;ENST00000535614.5;ENST00000536662.5	0.241	0.157	1.836	0.458(4386)	0.528(371)	0.706(12265)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
DPYSL2_LS005	chr8:26582057|26583799:+	DPYSL2	dihydropyrimidinase like 2	protein coding gene	no	ENST00000521913.6;ENST00000493789.6;ENST00000311151.9;ENST00000523027.1	45.763	52.587	29.743	0.93(8908)	0.984(691)	0.972(16903)	non tumor-specific	nAS	yes
UN_TUBB_LS0066	chr6:30722959|30723424:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	1.145	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC37A6P_LS002	chr10:27251511|27257870:-	LRRC37A6P	leucine rich repeat containing 37 member A6, pseudogene	pseudogene	no	ENST00000575554.1	0.111	0.019	0.725	0.006(57)	0.04(28)	0.015(258)	non tumor-specific	nAS	yes
AC114755.5_LS001	chr2:106369869|106370939:+	AC114755.5	-	pseudogene	no	ENST00000447760.1	1.496	0.791	0.593	0.25(2393)	0.246(173)	0.02(354)	non tumor-specific	nAS	yes
UN_TUBB8P11_UP_LS0004	chr1:858706|861105:+	TUBB8P11	tubulin beta 8 class VIII pseudogene 11	pseudogene	no	.	2.498	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BX664730.1_UP_LS0006	chr9:67612843|67613443:-	BX664730.1	-	lncRNA gene	no	.	3.999	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL135929.1_UP_LS0002	chr1:157700585|157700860:-	AL135929.1	-	pseudogene	no	.	1.667	0.634	0.000	0.026(245)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_NFKBIL1_LS0006	chr6:31548439|31557495:+	NFKBIL1	NFKB inhibitor like 1	protein coding gene	no	.	6.597	0.487	0.000	0.012(116)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
DRG1_LS012	chr22:31427182|31433872:+	DRG1	N-myc downstream regulated 1	protein coding gene	no	ENST00000331457.8;ENST00000469673.1	118.498	58.045	91.181	0.98(9385)	0.974(684)	0.979(17020)	non tumor-specific	nAS	yes
WASF3-AS1_LS005	chr13:26641165|26641276:-	WASF3-AS1	WASF3 antisense RNA 1	lncRNA gene	no	ENST00000585599.2	0.394	0.000	0.763	0(3)	0(0)	0.001(17)	non tumor-specific	nAS	yes
UN_NUPR1_LS0028	chr16:28538179|28538534:+	NUPR1	nuclear protein 1, transcriptional regulator	protein coding gene	yes	.	1.605	0.052	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTPRT_LS027	chr20:42315996|42350628:-	PTPRT	protein tyrosine phosphatase receptor type T	protein coding gene	yes	ENST00000373187.5;ENST00000356100.6;ENST00000373184.5;ENST00000373190.5;ENST00000373198.8;ENST00000373201.5;ENST00000612229.4;ENST00000373193.7;ENST00000618610.1;ENST00000617474.1	6.102	2.496	1.217	0.143(1371)	0.197(138)	0.228(3965)	non tumor-specific	nAS	yes
MCUB_LS005	chr4:109660365|109664290:+	MCUB	mitochondrial calcium uniporter dominant negative subunit beta	protein coding gene	no	ENST00000394650.6;ENST00000472310.5;ENST00000452915.3	17.814	10.101	18.029	0.973(9321)	0.974(684)	0.96(16683)	non tumor-specific	exon_skip	yes
UN_CACNB3_LS0022	chr12:48824373|48824672:+	CACNB3	calcium voltage-gated channel auxiliary subunit beta 3	protein coding gene	no	.	3.524	0.245	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
RTTN_LS002	chr18:70004236|70005198:-	RTTN	rotatin	protein coding gene	no	ENST00000639487.1;ENST00000640769.1;ENST00000578780.2;ENST00000583043.5;ENST00000638799.1;ENST00000640525.1;ENST00000579986.6;ENST00000639128.1;ENST00000581161.5	19.138	5.171	15.376	0.939(8994)	0.95(667)	0.977(16979)	non tumor-specific	alt_3prime;exon_skip	yes
ANK2_LS018	chr4:113240583|113242111:+	ANK2	ankyrin 2	protein coding gene	no	ENST00000503271.5;ENST00000503423.5;ENST00000506722.5;ENST00000504454.5;ENST00000394537.7;ENST00000357077.8;ENST00000264366.10;ENST00000634436.1	3.302	5.318	4.648	0.249(2381)	0.521(366)	0.794(13793)	non tumor-specific	nAS	yes
UN_MCF2L_LS0076	chr13:113011439|113011481:+	MCF2L	MCF.2 cell line derived transforming sequence like	protein coding gene	yes	.	1.986	0.100	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZSCAN31_LS019	chr6:28329778|28336082:-	ZSCAN31	zinc finger and SCAN domain containing 31	protein coding gene	no	ENST00000344279.10	0.290	0.462	1.152	0.547(5240)	0.801(562)	0.528(9176)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_WNK2_LS0028	chr9:93259480|93259517:-	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	.	4.627	1.053	0.000	0.006(60)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_HOMER1_UP_LS0004	chr5:79544471|79547454:-	HOMER1	homer scaffold protein 1	protein coding gene	no	.	2.083	0.324	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MUC4_LS0907	chr3:195788084|195788469:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	1.258	0.211	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PHRF1_LS0028	chr11:605300|606442:+	PHRF1	PHD and ring finger domains 1	protein coding gene	no	.	1.611	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_BEAN1_LS0010	chr16:66469865|66473994:+	BEAN1	brain expressed associated with NEDD4 1	protein coding gene	no	.	1.309	0.056	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ADAMTSL1_LS0023	chr9:18163981|18224053:+	ADAMTSL1	ADAMTS like 1	protein coding gene	no	.	2.793	0.622	0.000	0.005(48)	0.019(13)	0(0)	non tumor-specific	nAS	no
BCO1_LS005	chr16:81262283|81264640:+	BCO1	beta-carotene oxygenase 1	protein coding gene	no	ENST00000258168.6;ENST00000563804.5	4.943	2.181	1.205	0.327(3135)	0.335(235)	0.317(5514)	non tumor-specific	alt_5prime;exon_skip	yes
AGO2_LS014	chr8:140558572|140559395:-	AGO2	argonaute RISC catalytic component 2	protein coding gene	no	ENST00000220592.9;ENST00000519980.5;ENST00000523609.5	10.360	4.493	6.468	0.841(8053)	0.869(610)	0.954(16588)	non tumor-specific	alt_5prime;exon_skip	yes
CIDEB_LS014	chr14:24310548|24310649:-	CIDEB	cell death inducing DFFA like effector b	protein coding gene	no	ENST00000336557.9;ENST00000555471.1	0.482	0.312	2.115	0.687(6580)	0.85(597)	0.766(13309)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
BX276092.7_LS005	chrX:71664966|71665553:-	BX276092.7	-	pseudogene	no	ENST00000422194.6;ENST00000637198.1	5.123	0.000	0.646	0.032(307)	0(0)	0.004(78)	non tumor-specific	nAS	yes
UN_CTC1_LS0004	chr17:8228892|8229012:-	CTC1	CST telomere replication complex component 1	protein coding gene	no	.	3.859	0.148	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LTBP4_LS0025	chr19:40609808|40610595:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	.	10.830	6.971	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_KRT17_LS0043	chr17:41621091|41621191:-	KRT17	keratin 17	protein coding gene	no	.	2.623	0.398	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
NUMBL_LS011	chr19:40684556|40686911:-	NUMBL	NUMB like endocytic adaptor protein	protein coding gene	no	ENST00000252891.8;ENST00000598773.5;ENST00000595741.5;ENST00000600636.5;ENST00000599594.1	7.402	4.947	20.422	0.87(8337)	0.86(604)	0.974(16936)	non tumor-specific	exon_skip	yes
UN_PLD1_LS0003	chr3:171605416|171608301:-	PLD1	protein kinase C substrate 80K-H	protein coding gene	yes	.	3.170	0.783	0.000	0.031(293)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
UN_LINC00871_LS0017	chr14:46449954|46471362:+	LINC00871	long intergenic non-protein coding RNA 871	lncRNA gene	no	.	3.152	0.414	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
BPIFB4_LS006	chr20:33083874|33084892:+	BPIFB4	BPI fold containing family B member 4	protein coding gene	no	ENST00000375483.3	4.665	0.086	1.198	0.02(190)	0.001(1)	0.061(1056)	non tumor-specific	nAS	yes
UN_SHOX_UP_LS0017	chrX:435691|437604:+	SHOX	short stature homeobox	protein coding gene	no	.	2.272	0.498	0.000	0.01(95)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_BTF3P13_UP_LS0011	chr4:98660926|98677975:+	BTF3P13	basic transcription factor 3 pseudogene 13	pseudogene	no	.	2.225	0.090	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MUC1_LS0032	chr1:155187285|155187313:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	21.233	15.292	0.000	0.018(169)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_GATD1_LS0019	chr11:767923|768612:-	GATD1	glutamine amidotransferase like class 1 domain containing 1	protein coding gene	no	.	22.489	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POLDIP2_LS0016	chr17:28347572|28347622:+	POLDIP2	DNA polymerase delta interacting protein 2	protein coding gene	no	.	2.474	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FOXJ3_LS016	chr1:42311110|42335626:-	FOXJ3	forkhead box J3	protein coding gene	no	ENST00000372573.5	0.134	0.328	0.802	0.405(3876)	0.638(448)	0.185(3209)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC25A6P3_UP_LS0001	chr1:51574132|51598124:+	SLC25A6P3	solute carrier family 25 member 6 pseudogene 3	pseudogene	no	.	1.569	0.603	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_ADRM1_LS0027	chr20:62306703|62307771:-	ADRM1	adhesion regulating molecule 1	protein coding gene	no	.	3.073	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEP290_LS0026	chr12:88102941|88106675:-	CEP290	centrosomal protein 290	protein coding gene	no	.	1.669	0.095	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FBN1_LS055	chr15:48505147|48508582:-	FBN1	fibrillin 1	protein coding gene	no	ENST00000316623.9	13.457	11.070	7.259	0.697(6674)	0.879(617)	0.861(14969)	non tumor-specific	nAS	yes
DTNA_LS030	chr18:34816014|34818164:+	DTNA	dystrobrevin alpha	protein coding gene	no	ENST00000283365.13;ENST00000315456.10;ENST00000598334.5;ENST00000554864.7;ENST00000399121.9;ENST00000595022.5;ENST00000598774.5;ENST00000598142.5;ENST00000348997.9;ENST00000597599.5;ENST00000444659.5;ENST00000399113.7;ENST00000592114.1	9.878	6.416	19.141	0.79(7570)	0.922(647)	0.937(16292)	non tumor-specific	alt_3prime	yes
TMEM63B_LS027	chr6:44139759|44140252:+	TMEM63B	transmembrane protein 63B	protein coding gene	no	ENST00000259746.13;ENST00000532634.5;ENST00000534326.5;ENST00000323267.10;ENST00000525294.5;ENST00000371893.6;ENST00000525873.5;ENST00000527188.1;ENST00000533121.1	17.347	14.589	31.368	0.986(9449)	0.994(698)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC009119.2_LS0037	chr16:83937184|83945232:+	AC009119.2	-	protein coding gene	no	.	1.931	0.453	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_IGLJ6_UP_LS0008	chr22:22901213|22915852:+	IGLJ6	immunoglobulin lambda joining 6	no	no	.	1067.236	162.610	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	nAS	no
TREML1_LS005	chr6:41151384|41153758:-	TREML1	triggering receptor expressed on myeloid cells like 1	protein coding gene	no	ENST00000373127.8;ENST00000426005.6	1.266	0.804	1.249	0.125(1193)	0.118(83)	0.299(5200)	non tumor-specific	alt_5prime;exon_skip	yes
UN_UBN1_LS0035	chr16:4878049|4880083:+	UBN1	ubinuclein 1	protein coding gene	no	.	1.883	0.331	0.000	0.025(238)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DOCK3_LS049	chr3:51362674|51374469:+	DOCK3	dedicator of cytokinesis 3	protein coding gene	no	ENST00000266037.9	6.135	5.016	3.716	0.216(2072)	0.164(115)	0.777(13498)	non tumor-specific	nAS	yes
UN_LINC01341_UP_LS0001	chr1:246768843|246775445:+	LINC01341	long intergenic non-protein coding RNA 1341	lncRNA gene	no	.	0.745	0.084	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C6_LS0037	chr5:41203718|41213376:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	.	2.294	0.388	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
RERE_LS032	chr1:8519792|8525759:-	RERE	arginine-glutamic acid dipeptide repeats	protein coding gene	yes	ENST00000464972.5	0.094	0.002	0.654	0.019(185)	0.041(29)	0.049(860)	non tumor-specific	exon_skip	yes
TLCD1_LS002	chr17:28724893|28725304:-	TLCD1	TLC domain containing 1	protein coding gene	no	ENST00000292090.7;ENST00000394933.7;ENST00000580518.1	37.751	13.224	7.491	0.982(9406)	0.974(684)	0.896(15570)	non tumor-specific	exon_skip	yes
AC139491.2_LS009	chr5:176156989|176158864:-	AC139491.2	-	lncRNA gene	no	ENST00000515403.5	3.901	0.543	1.535	0.082(789)	0.026(18)	0.285(4956)	non tumor-specific	nAS	yes
SPHK1_LS007	chr17:76383529|76385451:+	SPHK1	sphingosine kinase 1	protein coding gene	no	ENST00000591762.1	0.356	0.342	1.486	0.445(4266)	0.246(173)	0.623(10833)	non tumor-specific	alt_5prime	yes
UN_PTMA_LS0037	chr2:231708678|231712987:-	PTMA	prothymosin alpha	protein coding gene	yes	.	17.400	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
C7orf31_LS004	chr7:25151684|25155011:-	C7orf31	chromosome 7 open reading frame 31	protein coding gene	no	ENST00000409280.5;ENST00000283905.7	9.020	6.444	4.043	0.807(7730)	0.909(638)	0.917(15942)	non tumor-specific	exon_skip	yes
KDM5B_LS011	chr1:202741722|202742391:-	KDM5B	lysine demethylase 5B	protein coding gene	yes	ENST00000367265.8;ENST00000648338.1;ENST00000649542.1;ENST00000647757.1;ENST00000649400.1;ENST00000367264.7;ENST00000650569.1;ENST00000648473.1;ENST00000648056.1;ENST00000649230.1;ENST00000650506.1;ENST00000649770.1;ENST00000648469.1;ENST00000498276.2;ENST00000650417.1;ENST00000649089.1;ENST00000235790.9;ENST00000650422.1	49.209	22.252	17.583	0.969(9286)	0.98(688)	0.976(16965)	non tumor-specific	nAS	yes
UN_AL133216.2_LS0046	chr10:38438922|38444545:+	AL133216.2	-	pseudogene	no	.	1.773	0.352	0.000	0.072(694)	0.077(54)	0(0)	non tumor-specific	exon_skip	no
LFNG_LS012	chr7:2526409|2526836:+	LFNG	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein coding gene	no	ENST00000402506.5;ENST00000402045.5;ENST00000338732.7;ENST00000222725.9;ENST00000359574.7;ENST00000493850.1;ENST00000614382.1	62.329	29.984	22.207	0.984(9431)	0.986(692)	0.97(16853)	non tumor-specific	alt_5prime	yes
VPS13A_LS059	chr9:77353641|77356714:+	VPS13A	vacuolar protein sorting 13 homolog A	protein coding gene	no	ENST00000376634.8;ENST00000376636.7;ENST00000360280.7;ENST00000357409.9;ENST00000645632.1;ENST00000643348.1;ENST00000644843.1	8.306	6.711	18.771	0.848(8120)	0.927(651)	0.962(16719)	non tumor-specific	exon_skip	yes
UN_UGT2B7_LS0047	chr4:69086891|69088767:+	UGT2B7	UDP glucuronosyltransferase family 2 member B7	protein coding gene	no	.	4.481	1.059	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC115286.1_UP_LS0043	chr1:34561068|34604473:-	AC115286.1	-	pseudogene	no	.	1.052	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FRG1KP_LS0001	chr9:65647017|65648196:-	FRG1KP	FSHD region gene 1 family member K, pseudogene	pseudogene	no	.	1.404	0.671	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
TRIM36_LS001	chr5:115126857|115130592:-	TRIM36	tripartite motif containing 36	protein coding gene	no	ENST00000282369.7;ENST00000513154.5;ENST00000514154.1	6.208	4.279	2.431	0.544(5214)	0.446(313)	0.703(12215)	non tumor-specific	nAS	yes
POLDIP3_LS002	chr22:42585316|42602770:-	POLDIP3	DNA polymerase delta interacting protein 3	protein coding gene	no	ENST00000339677.10	0.416	0.214	0.639	0.622(5955)	0.668(469)	0.009(159)	non tumor-specific	nAS	yes
FTSJ3_LS015	chr17:63823952|63824084:-	FTSJ3	FtsJ RNA 2'-O-methyltransferase 3	protein coding gene	no	ENST00000427159.6;ENST00000580376.5	38.618	22.686	40.682	0.995(9533)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime	yes
PHLDB3_LS018	chr19:43497876|43501734:-	PHLDB3	pleckstrin homology like domain family B member 3	protein coding gene	no	ENST00000292140.9;ENST00000599242.1	8.468	4.918	8.253	0.92(8818)	0.917(644)	0.965(16775)	non tumor-specific	exon_skip	yes
STT3A_LS004	chr11:125592918|125593638:+	STT3A	STT3 oligosaccharyltransferase complex catalytic subunit A	protein coding gene	no	ENST00000529196.5;ENST00000529196.5	0.287	0.331	0.779	0.503(4818)	0.473(332)	0.274(4769)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_KCNS3_LS0003	chr2:17879108|17917680:+	KCNS3	potassium voltage-gated channel modifier subfamily S member 3	protein coding gene	no	.	1.162	0.027	0.000	0.012(115)	0.003(2)	0(0)	non tumor-specific	nAS	no
SDK2_LS038	chr17:73433848|73435450:-	SDK2	sidekick cell adhesion molecule 2	protein coding gene	no	ENST00000392650.7;ENST00000479356.1	4.421	1.458	0.946	0.244(2341)	0.296(208)	0.334(5797)	non tumor-specific	nAS	yes
CBLC_LS005	chr19:44782491|44784264:+	CBLC	Cbl proto-oncogene C	protein coding gene	no	ENST00000270279.7;ENST00000647358.2;ENST00000647063.1	56.134	32.044	14.058	0.71(6799)	0.92(646)	0.382(6646)	non tumor-specific	alt_5prime;exon_skip	yes
BIN2_LS004	chr12:51288188|51291591:-	BIN2	bridging integrator 2	protein coding gene	no	ENST00000605039.5;ENST00000452142.6;ENST00000615107.4;ENST00000544402.5	31.002	10.199	7.531	0.893(8555)	0.949(666)	0.93(16164)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NUP93_LS0023	chr16:56739816|56740043:-	NUP93	nucleoporin 93	protein coding gene	no	.	2.613	1.326	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MASTL_LS0014	chr10:27167735|27169944:+	MASTL	microtubule associated serine/threonine kinase like	protein coding gene	no	.	2.576	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMA16_LS0004	chr4:163496740|163507033:+	TMA16	translation machinery associated 16 homolog	protein coding gene	no	.	0.911	0.149	0.000	0.007(63)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
LAMA1_LS041	chr18:7009366|7010200:-	LAMA1	laminin subunit alpha 1	protein coding gene	no	ENST00000389658.3;ENST00000579014.5	5.772	1.428	1.372	0.334(3203)	0.352(247)	0.368(6396)	non tumor-specific	nAS	yes
UN_DNAH14_LS0048	chr1:225185425|225204183:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	.	1.721	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC244502.1_LS0015	chr14:22418935|22427689:-	AC244502.1	-	lncRNA gene	no	.	6.938	0.302	0.000	0.105(1003)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC091860.1_UP_LS0021	chr5:52380905|52436866:-	AC091860.1	-	pseudogene	no	.	7.182	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
IPO4_LS012	chr14:24183169|24183250:-	IPO4	importin 4	protein coding gene	no	ENST00000561090.5;ENST00000354464.10;ENST00000561462.5;ENST00000560798.5;ENST00000558780.5;ENST00000558046.5;ENST00000560155.5;ENST00000558233.1;ENST00000561199.5;ENST00000561379.1	52.087	22.021	25.452	0.994(9519)	0.991(696)	0.978(16998)	non tumor-specific	alt_3prime;intron_retention	yes
BAZ2A_LS020	chr12:56606063|56606247:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	ENST00000379441.7;ENST00000551812.5;ENST00000549884.5;ENST00000549763.1;ENST00000548578.1;ENST00000547650.1	43.378	28.123	53.274	0.984(9431)	0.99(695)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_CPNE4_LS0077	chr3:132044500|132259784:-	CPNE4	copine 4	protein coding gene	no	.	12.287	3.360	0.000	0.029(276)	0.027(19)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ITFG1-AS1_UP_LS0003	chr16:47055878|47063290:+	ITFG1-AS1	ITFG1 antisense RNA 1	lncRNA gene	no	.	2.404	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
ALG13_LS053	chrX:111727770|111728185:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000394780.7;ENST00000610588.4;ENST00000251943.8;ENST00000621367.4;ENST00000624161.3;ENST00000636363.1;ENST00000495283.5;ENST00000623144.3;ENST00000470971.5;ENST00000623148.3;ENST00000436609.5;ENST00000623622.1;ENST00000486578.4;ENST00000460092.2	7.639	3.346	20.505	0.938(8986)	0.937(658)	0.976(16966)	non tumor-specific	alt_3prime;exon_skip	yes
PLB1_LS005	chr2:28519763|28525267:+	PLB1	phospholipase B1	protein coding gene	no	ENST00000416713.5;ENST00000327757.9;ENST00000422425.6;ENST00000404858.5	1.144	0.437	1.290	0.032(311)	0.017(12)	0.173(3014)	non tumor-specific	nAS	yes
ZNF7_LS011	chr8:144828053|144829043:+	ZNF7	zinc finger protein 7	protein coding gene	no	ENST00000529819.5	0.085	0.043	0.685	0.046(443)	0.033(23)	0.13(2265)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ATP6V0A1_UP_LS0030	chr17:42425062|42436266:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	.	2.889	0.215	0.000	0.012(113)	0.013(9)	0(0)	non tumor-specific	nAS	no
PPFIA1_LS030	chr11:70341097|70343669:+	PPFIA1	PTPRF interacting protein alpha 1	protein coding gene	no	ENST00000526347.5;ENST00000530294.5	0.028	0.004	0.626	0.432(4140)	0.425(298)	0.005(90)	non tumor-specific	nAS	yes
UN_ELMOD2_LS0010	chr4:140542642|140543470:+	ELMOD2	ELMO domain containing 2	protein coding gene	no	.	4.481	0.392	0.000	0.016(156)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_TEKT5_LS0002	chr16:10627799|10628095:-	TEKT5	tektin 5	protein coding gene	no	.	5.316	1.014	0.000	0.04(380)	0.028(20)	0(0)	non tumor-specific	alt_5prime	no
UN_DOCK9_UP_LS0001	chr13:99104313|99118274:-	DOCK9	dedicator of cytokinesis 9	protein coding gene	no	.	3.839	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NCOR2_LS0002	chr12:124324549|124324588:+	NCOR2	nuclear receptor corepressor 2	protein coding gene	no	.	0.625	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DCPS_LS005	chr11:126327963|126330194:+	DCPS	decapping enzyme, scavenger	protein coding gene	no	.;.;.	4.382	1.281	0.000	0.038(368)	0.13(91)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC072062.1_LS010	chr2:215044517|215080767:+	AC072062.1	-	lncRNA gene	no	ENST00000628464.2;ENST00000626771.1	1.064	0.000	0.614	0(1)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_AC026898.1_UP_LS0005	chr18:47654535|47693865:+	AC026898.1	-	pseudogene	no	.	0.971	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCNL2_LS0001	chr1:1386496|1387235:-	CCNL2	cyclin L2	protein coding gene	no	.	6.210	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_A1BG_LS0025	chr19:58353044|58353321:+	A1BG	alpha-1-B glycoprotein	protein coding gene	no	.	1.815	0.066	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PANK1_LS0022	chr10:89635065|89639149:-	PANK1	pantothenate kinase 1	protein coding gene	no	.	2.056	0.988	0.000	0.04(387)	0.12(84)	0(0)	non tumor-specific	exon_skip	no
UN_RPL21P43_UP_LS0020	chr3:169029170|169031659:-	RPL21P43	ribosomal protein L21 pseudogene 43	pseudogene	no	.	26.553	0.569	0.000	0.005(49)	0.056(39)	0(0)	non tumor-specific	nAS	no
UN_HLA-E_LS0187	chr6:30493033|30493169:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	8.797	1.633	0.000	0.011(109)	0.007(5)	0(0)	non tumor-specific	nAS	no
ADAM23_LS012	chr2:206561212|206562203:+	ADAM23	ADAM metallopeptidase domain 28	protein coding gene	no	ENST00000264377.7;ENST00000374415.7	13.754	6.806	4.113	0.435(4164)	0.481(338)	0.826(14356)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RLIM_LS0008	chrX:74588209|74588346:-	RLIM	ring finger protein, LIM domain interacting	protein coding gene	no	.	2.936	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_ATAD5_LS0021	chr17:30860612|30868333:+	ATAD5	ATPase family AAA domain containing 5	protein coding gene	no	.	1.838	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC00598_LS020	chr13:40350302|40439672:-	LINC00598	long intergenic non-protein coding RNA 598	lncRNA gene	no	ENST00000400432.4	3.474	0.000	0.878	0(1)	0(0)	0.075(1305)	non tumor-specific	nAS	yes
FAM160A2_LS010	chr11:6222609|6222811:-	FAM160A2	family with sequence similarity 160 member A2	protein coding gene	no	ENST00000449352.6;ENST00000265978.8;ENST00000524416.1	31.274	23.940	36.801	0.967(9264)	0.99(695)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_MAGED2_LS0045	chrX:54814993|54815248:+	MAGED2	MAGE family member D2	protein coding gene	no	.	1.459	0.030	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TTC39C_LS016	chr18:24123943|24125427:+	TTC39C	tetratricopeptide repeat domain 39C	protein coding gene	no	ENST00000304621.10;ENST00000317571.7;ENST00000540918.2;ENST00000584424.1;ENST00000584095.1	22.452	18.421	10.535	0.987(9461)	0.994(698)	0.951(16523)	non tumor-specific	alt_3prime	yes
LINC02073_LS002	chr17:51339724|51341251:+	LINC02073	long intergenic non-protein coding RNA 2073	lncRNA gene	no	ENST00000441895.2;ENST00000650413.1	0.305	0.242	1.097	0.005(44)	0.001(1)	0.047(815)	non tumor-specific	nAS	yes
SSX2B_LS006	chrX:52755849|52757854:+	SSX2B	SSX family member 2B	protein coding gene	yes	ENST00000616191.4;ENST00000596480.5;ENST00000612490.1;ENST00000288839.6	3.530	0.070	0.748	0.111(1064)	0.084(59)	0.001(17)	non tumor-specific	alt_5prime	yes
PHF21A_LS036	chr11:46083611|46084166:-	PHF21A	PHD finger protein 21A	protein coding gene	no	ENST00000529782.5	0.638	0.000	0.658	0.02(188)	0.024(17)	0.078(1348)	non tumor-specific	exon_skip	yes
UN_ZFRP1_UP_LS0018	chrX:63259817|63314997:-	ZFRP1	zinc finger RNA binding protein pseudogene 1	pseudogene	no	.	1.627	0.233	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TEC_LS0002	chr4:48136402|48136634:-	TEC	tec protein tyrosine kinase	protein coding gene	yes	.	1.915	1.517	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
COG1_LS010	chr17:73203146|73203632:+	COG1	component of oligomeric golgi complex 1	protein coding gene	no	ENST00000618996.4;ENST00000299886.8;ENST00000438720.7	70.247	44.728	52.234	0.986(9446)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LINC02546_LS001	chr11:29594966|29596806:+	LINC02546	long intergenic non-protein coding RNA 2546	lncRNA gene	no	ENST00000527492.5	0.697	0.081	0.854	0.003(33)	0.003(2)	0.012(217)	non tumor-specific	nAS	yes
UN_ZNF644_UP_LS0004	chr1:91250386|91290728:-	ZNF644	zinc finger protein 644	protein coding gene	no	.	1.423	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SQLE_LS008	chr8:125007487|125008971:+	SQLE	squalene epoxidase	protein coding gene	no	ENST00000523430.5;ENST00000265896.9	85.365	34.820	16.901	0.985(9440)	0.996(699)	0.963(16746)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HIVEP2_LS0038	chr6:142837047|142882821:-	HIVEP2	HIVEP zinc finger 2	protein coding gene	no	.	0.676	0.223	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
GRAP_LS008	chr17:19036080|19041807:-	GRAP	GRB2 related adaptor protein	protein coding gene	no	ENST00000284154.9;ENST00000573099.5;ENST00000395635.5;ENST00000583020.1;ENST00000571380.1	9.674	6.078	2.351	0.954(9136)	0.969(680)	0.772(13420)	non tumor-specific	exon_skip	yes
UN_DMGDH_LS0019	chr5:79030034|79030710:-	DMGDH	dimethylglycine dehydrogenase	protein coding gene	no	.	1.550	7.221	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
PKD1L2_LS017	chr16:81147514|81148140:-	PKD1L2	polycystin 1 like 2 (gene/pseudogene)	pseudogene	no	ENST00000533478.5;ENST00000525539.5;ENST00000299598.11	2.689	0.921	1.992	0.024(232)	0.058(41)	0.579(10072)	non tumor-specific	nAS	yes
UN_SLC12A7_UP_LS0006	chr5:1128282|1129784:-	SLC12A7	solute carrier family 12 member 7	protein coding gene	no	.	2.619	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NR1H2_LS0096	chr19:50378638|50382700:-	NR1H2	nuclear receptor subfamily 1 group H member 2	protein coding gene	no	.	0.840	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HPCAL1_LS0049	chr2:10408469|10408562:+	HPCAL1	hippocalcin like 1	protein coding gene	no	.	2.273	0.406	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SLC22A2_LS013	chr6:160249384|160250548:-	SLC22A2	solute carrier family 22 member 2	protein coding gene	no	ENST00000366953.7;ENST00000491092.1;ENST00000366952.1	31.005	82.698	0.935	0.081(775)	0.197(138)	0.05(874)	non tumor-specific	alt_5prime;intron_retention	yes
ANKDD1B_LS003	chr5:75616907|75620315:+	ANKDD1B	ankyrin repeat and death domain containing 1B	protein coding gene	no	ENST00000601380.2	1.050	0.632	0.706	0.019(185)	0.078(55)	0.067(1164)	non tumor-specific	exon_skip	yes
ZNF862_LS006	chr7:149840607|149846151:+	ZNF862	zinc finger protein 862	protein coding gene	no	.;.	1.516	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SLC22A9_LS007	chr11:63382277|63406497:+	SLC22A9	solute carrier family 22 member 9	protein coding gene	no	ENST00000536333.5;ENST00000279178.3	11.706	6.953	1.271	0.046(438)	0.095(67)	0.056(978)	non tumor-specific	alt_3prime;exon_skip	yes
ADPRH_LS001	chr3:119579851|119580485:+	ADPRH	ADP-ribosylarginine hydrolase	protein coding gene	yes	ENST00000481816.5	0.213	0.193	0.852	0.329(3154)	0.497(349)	0.387(6719)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LCK_LS015	chr1:32279747|32279841:+	LCK	LCK proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000373564.7;ENST00000336890.9;ENST00000495610.6;ENST00000619559.4;ENST00000333070.4	28.667	7.395	3.547	0.858(8219)	0.929(652)	0.784(13633)	non tumor-specific	alt_3prime	yes
UN_AC243960.1_UP_LS0002	chr19:41531575|41535728:+	AC243960.1	-	lncRNA gene	no	.	1.129	0.387	0.000	0.006(54)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_H2AFY_LS0013	chr5:135335141|135342716:-	H2AFY	macroH2A.1 histone	protein coding gene	no	.	3.985	0.219	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
DDX27_LS002	chr20:49221598|49222957:+	DDX27	DEAD-box helicase 27	protein coding gene	no	ENST00000622530.4;ENST00000371764.8;ENST00000484427.5;ENST00000618172.4;ENST00000462328.2	80.110	37.022	43.390	0.992(9503)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_MADD_LS0058	chr11:47326807|47327442:+	MADD	MAP kinase activating death domain	protein coding gene	yes	.	1.834	0.370	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
LINC00680-GUSBP4_LS004	chr6:57930291|57959028:-	LINC00680-GUSBP4	-	lncRNA gene	no	ENST00000637710.1;ENST00000636069.1	3.860	2.488	5.335	0.21(2010)	0.336(236)	0.934(16235)	non tumor-specific	nAS	yes
UN_AL365434.2_UP_LS0003	chr10:91012971|91023323:-	AL365434.2	-	lncRNA gene	no	.	3.405	0.531	0.000	0.081(777)	0.021(15)	0(0)	non tumor-specific	nAS	no
LRIG1_LS007	chr3:66384272|66385981:-	LRIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	yes	ENST00000273261.7;ENST00000383703.3;ENST00000496559.6;ENST00000495037.1	80.816	62.189	40.032	0.935(8957)	0.99(695)	0.971(16879)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CYSTM1_LS0047	chr5:140243350|140243470:-	CYSTM1	cysteine rich transmembrane module containing 1	protein coding gene	no	.	1.675	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTP4A1_UP_LS0003	chr6:63516675|63516811:+	PTP4A1	protein tyrosine phosphatase 4A1	protein coding gene	yes	.	2.479	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
ANKRD17_LS018	chr4:73120337|73120881:-	ANKRD17	ankyrin repeat domain 17	protein coding gene	no	ENST00000358602.8;ENST00000558247.5;ENST00000509867.6;ENST00000330838.10;ENST00000561029.1;ENST00000514252.1	31.528	22.955	21.606	0.963(9223)	0.986(692)	0.977(16990)	non tumor-specific	exon_skip	yes
UN_AC010266.1_UP_LS0008	chr5:5667887|5669536:+	AC010266.1	-	lncRNA gene	no	.	3.391	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	nAS	no
AC008448.1_LS001	chr5:89901201|89904863:+	AC008448.1	-	lncRNA gene	no	ENST00000505109.1	0.018	0.000	0.743	0(1)	0(0)	0.001(16)	non tumor-specific	nAS	yes
SNAPIN_LS006	chr1:153659184|153659448:+	SNAPIN	SNAP associated protein	protein coding gene	no	ENST00000368685.5;ENST00000474959.5	95.345	53.943	60.084	0.999(9567)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TPK1_LS008	chr7:144607050|144623166:-	TPK1	thiamin pyrophosphokinase 1	protein coding gene	no	ENST00000482940.5;ENST00000378098.8	0.062	0.085	0.676	0.04(383)	0.041(29)	0.106(1837)	non tumor-specific	exon_skip	yes
UN_UBE2Q2P1_LS0001	chr15:84526876|84527166:-	UBE2Q2P1	ubiquitin conjugating enzyme E2 Q2 pseudogene 1	pseudogene	no	.	0.158	0.003	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	nAS	no
ALPK3_LS010	chr15:84860072|84862635:+	ALPK3	alpha kinase 3	protein coding gene	no	ENST00000258888.5	8.237	5.732	4.182	0.529(5064)	0.699(491)	0.779(13544)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_IGKC_LS0089	chr2:88857450|88857472:+	IGKC	immunoglobulin kappa constant	no	no	.	135.293	7.581	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRPM6_LS0001	chr9:74732736|74737355:-	TRPM6	transient receptor potential cation channel subfamily M member 6	protein coding gene	no	.	1.752	0.828	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_RPGRIP1_UP_LS0001	chr14:21188692|21188885:+	RPGRIP1	RPGR interacting protein 1	protein coding gene	no	.	2.038	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ATF2_LS015	chr2:175111654|175114690:-	ATF2	glial cell derived neurotrophic factor	protein coding gene	no	ENST00000421438.5	0.386	0.171	0.639	0.056(541)	0.058(41)	0.054(947)	non tumor-specific	exon_skip	yes
PLEKHG4B_LS008	chr5:154991|155345:+	PLEKHG4B	pleckstrin homology and RhoGEF domain containing G4B	protein coding gene	no	ENST00000637938.1;ENST00000283426.11;ENST00000502646.1	11.007	2.478	1.576	0.47(4504)	0.51(358)	0.402(6985)	non tumor-specific	nAS	yes
VRK3_LS004	chr19:49981013|49988372:-	VRK3	VRK serine/threonine kinase 3	protein coding gene	no	ENST00000316763.7;ENST00000377011.6;ENST00000599538.5;ENST00000596814.5;ENST00000601341.5;ENST00000594948.5	62.188	39.213	27.801	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UXS1_LS019	chr2:106158118|106160007:-	UXS1	UDP-glucuronate decarboxylase 1	protein coding gene	no	.;.	0.264	0.188	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_OCRL_LS0010	chrX:129540478|129540753:+	OCRL	OCRL inositol polyphosphate-5-phosphatase	protein coding gene	no	.	6.178	2.247	0.000	0.127(1213)	0.123(86)	0(0)	non tumor-specific	alt_3prime	no
ITGAM_LS019	chr16:31297954|31321241:+	ITGAM	integrin subunit alpha M	protein coding gene	no	ENST00000648685.1;ENST00000544665.8;ENST00000287497.13	8.854	4.810	3.673	0.554(5309)	0.624(438)	0.854(14851)	non tumor-specific	exon_skip	yes
UN_PAX7_LS0002	chr1:18636078|18636237:+	PAX7	paired box 7	protein coding gene	no	.	3.894	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MKNK1_LS0031	chr1:46583329|46584458:-	MKNK1	MAPK interacting serine/threonine kinase 1	protein coding gene	no	.	1.216	0.829	0.000	0.134(1284)	0.125(88)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FLG_LS0027	chr1:152306269|152308214:-	FLG	filaggrin	protein coding gene	no	.	9.154	0.372	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
CPA1_LS007	chr7:130381863|130382108:+	CPA1	carboxypeptidase A1	protein coding gene	no	ENST00000481342.5;ENST00000011292.7;ENST00000491460.5;ENST00000476062.5;ENST00000484324.1	26.416	35.283	6.515	0.063(601)	0.208(146)	0.709(12319)	non tumor-specific	nAS	yes
HDAC8_LS034	chrX:72495268|72568754:-	HDAC8	histone deacetylase 8	protein coding gene	no	ENST00000650471.1	0.047	0.041	0.636	0.053(507)	0.044(31)	0.021(364)	non tumor-specific	exon_skip	yes
UN_FGFR1OP_LS0015	chr6:167027926|167029115:+	FGFR1OP	centrosomal protein 43	protein coding gene	yes	.	2.513	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HSPA8P5_UP_LS0001	chr12:4019139|4020980:+	HSPA8P5	heat shock protein family A (Hsp70) member 8 pseudogene 5	pseudogene	no	.	5.899	1.585	0.000	0.047(446)	0.04(28)	0(0)	non tumor-specific	nAS	no
PRR36_LS012	chr19:7872756|7872849:-	PRR36	proline rich 36	protein coding gene	no	ENST00000618550.4	7.495	3.154	3.461	0.591(5662)	0.578(406)	0.396(6877)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL360227.1_UP_LS0004	chr6:111281079|111281780:-	AL360227.1	-	lncRNA gene	no	.	1.521	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM20C_LS0070	chr7:257960|258034:-	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	.	2.822	0.568	0.000	0.008(76)	0.009(6)	0(0)	non tumor-specific	nAS	no
TBC1D2B_LS013	chr15:78016739|78017847:-	TBC1D2B	TBC1 domain family member 2B	protein coding gene	no	ENST00000300584.7;ENST00000409931.7	19.351	13.086	20.131	0.923(8841)	0.98(688)	0.974(16934)	non tumor-specific	alt_3prime;exon_skip	yes
EXOSC8_LS019	chr13:37003007|37004516:+	EXOSC8	exosome component 8	protein coding gene	no	ENST00000489088.5;ENST00000389704.3;ENST00000239893.9;ENST00000474661.5;ENST00000489088.5;ENST00000389704.3;ENST00000239893.9;ENST00000474661.5;ENST00000489088.5;ENST00000389704.3;ENST00000239893.9;ENST00000474661.5	38.033	18.805	31.020	0.995(9537)	0.997(700)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RSPH6A_LS002	chr19:45796106|45800446:-	RSPH6A	radial spoke head 6 homolog A	protein coding gene	no	ENST00000221538.7;ENST00000600188.5	3.753	1.093	2.951	0.058(558)	0.081(57)	0.061(1068)	non tumor-specific	alt_3prime;exon_skip	yes
RPS6KL1_LS021	chr14:74911380|74911794:-	RPS6KL1	ribosomal protein S6 kinase like 1	protein coding gene	no	ENST00000354625.6;ENST00000555834.5;ENST00000555009.5;ENST00000555647.5;ENST00000557413.5;ENST00000553894.6;ENST00000554900.1	1.095	0.898	5.049	0.505(4834)	0.517(363)	0.885(15381)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_VAMP2_LS0010	chr17:8159611|8159739:+	VAMP2	vesicle associated membrane protein 2	protein coding gene	no	.	3.413	1.763	0.000	0.008(81)	0.011(8)	0(0)	non tumor-specific	nAS	no
HOXB3_LS024	chr17:48574014|48604480:-	HOXB3	homeobox B3	protein coding gene	no	ENST00000552000.2	0.999	0.542	1.329	0.495(4741)	0.52(365)	0.325(5645)	non tumor-specific	nAS	yes
IGFL2-AS1_LS001	chr19:46189229|46198408:-	IGFL2-AS1	IGFL2 antisense RNA 1	lncRNA gene	no	ENST00000594027.5	0.443	0.027	0.748	0.122(1169)	0.014(10)	0.031(539)	non tumor-specific	nAS	yes
UN_AC007728.2_LS0007	chr16:50740794|50741328:-	AC007728.2	-	lncRNA gene	no	.	2.086	0.321	0.000	0.016(150)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_SOS2_LS0044	chr14:50204409|50223530:-	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein coding gene	no	.	1.774	0.932	0.000	0.038(360)	0.111(78)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC245047.8_LS002	chrX:48277076|48277510:-	AC245047.8	-	pseudogene	no	ENST00000456455.1	0.610	0.040	0.663	0.066(631)	0.019(13)	0.048(835)	non tumor-specific	nAS	yes
EFTUD2_LS022	chr17:44865065|44865242:-	EFTUD2	elongation factor Tu GTP binding domain containing 2	protein coding gene	no	ENST00000585616.5	0.005	0.009	0.683	0.682(6531)	0.711(499)	0.055(957)	non tumor-specific	nAS	yes
UN_CALML3_LS0010	chr10:5525448|5525494:+	CALML3	calmodulin like 3	protein coding gene	no	.	181.367	23.386	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NGLY1_LS0011	chr3:25733982|25735970:-	NGLY1	N-glycanase 1	protein coding gene	no	.	3.873	0.294	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
CD109_LS018	chr6:73780498|73781259:+	CD109	CD109 molecule	protein coding gene	no	ENST00000422508.6;ENST00000437994.6;ENST00000287097.5;ENST00000649530.1	12.291	5.157	4.423	0.691(6616)	0.786(552)	0.779(13542)	non tumor-specific	nAS	yes
ZNF302_LS006	chr19:34678103|34678737:+	ZNF302	zinc finger protein 302	protein coding gene	no	ENST00000613363.4;ENST00000505242.5;ENST00000505365.2	0.155	0.217	1.613	0.676(6478)	0.694(487)	0.684(11894)	non tumor-specific	alt_5prime;intron_retention	yes
AP1G1_LS012	chr16:71750332|71753833:-	AP1G1	adaptor related protein complex 1 subunit gamma 1	protein coding gene	no	ENST00000299980.8;ENST00000569748.5;ENST00000393512.7;ENST00000565642.5;ENST00000568327.5;ENST00000566179.1	28.839	20.677	19.882	0.946(9067)	0.987(693)	0.977(16990)	non tumor-specific	alt_3prime	yes
TRPM4_LS003	chr19:49158259|49168260:+	TRPM4	transient receptor potential cation channel subfamily M member 4	protein coding gene	no	ENST00000595519.5	0.072	0.065	1.214	0.357(3420)	0.407(286)	0.545(9466)	non tumor-specific	exon_skip	yes
NCBP1_LS022	chr9:97658743|97660946:+	NCBP1	nuclear cap binding protein subunit 1	protein coding gene	no	ENST00000375147.7	40.763	20.235	20.915	0.985(9435)	0.994(698)	0.979(17010)	non tumor-specific	alt_5prime;intron_retention	yes
POU2F2_LS016	chr19:42096243|42099527:-	POU2F2	POU class 2 homeobox 2	protein coding gene	no	ENST00000526816.6;ENST00000534559.5;ENST00000529952.5;ENST00000528894.8;ENST00000526831.2	1.783	0.453	1.332	0.49(4697)	0.453(318)	0.579(10071)	non tumor-specific	alt_3prime	yes
UN_EML4_LS0049	chr2:42304551|42325467:+	EML4	EMAP like 4	protein coding gene	yes	.	3.232	0.443	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CROCCP3_LS0018	chr1:16491084|16499203:-	CROCCP3	CROCC pseudogene 3	pseudogene	no	.	0.302	0.064	0.000	0.006(56)	0.003(2)	0(0)	non tumor-specific	nAS	no
GFM2_LS029	chr5:74760986|74763680:-	GFM2	GTP dependent ribosome recycling factor mitochondrial 2	protein coding gene	no	ENST00000296805.7;ENST00000345239.6;ENST00000509430.5;ENST00000427854.6;ENST00000509097.1	18.720	13.640	7.843	0.942(9029)	0.98(688)	0.963(16744)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PIGB_LS0038	chr15:55339318|55340657:+	PIGB	phosphatidylinositol glycan anchor biosynthesis class B	protein coding gene	no	.	3.213	0.730	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC073174.1_UP_LS0010	chr10:53026127|53029892:-	AC073174.1	-	lncRNA gene	no	.	12.780	7.733	0.000	0.278(2661)	0.34(239)	0(0)	non tumor-specific	nAS	no
IGF2BP3_LS022	chr7:23361741|23394584:-	IGF2BP3	insulin like growth factor 2 mRNA binding protein 3	protein coding gene	no	ENST00000492771.5	0.015	0.009	0.426	0.02(188)	0.004(3)	0.004(77)	non tumor-specific	nAS	yes
LMAN1L_LS012	chr15:74818817|74819152:+	LMAN1L	lectin, mannose binding 1 like	protein coding gene	no	ENST00000470711.6;ENST00000309664.9;ENST00000456603.2;ENST00000379709.7	4.316	7.078	2.073	0.061(584)	0.083(58)	0.28(4863)	non tumor-specific	alt_3prime;exon_skip	yes
UN_USP4_LS0037	chr3:49302542|49310620:-	USP4	ubiquitin specific peptidase 4	protein coding gene	yes	.	0.914	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC244517.11_LS0047	chr5:141157534|141194089:-	AC244517.11	-	lncRNA gene	no	.	1.915	0.052	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLB1_LS0059	chr2:28632151|28632944:+	PLB1	phospholipase B1	protein coding gene	no	.	3.131	0.001	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PTMS_LS0069	chr12:6767614|6770505:+	PTMS	parathymosin	protein coding gene	no	.	6.465	0.980	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RASSF4_LS0002	chr10:44959866|44970169:+	RASSF4	Ras and Rab interactor 2	protein coding gene	yes	.	2.481	0.763	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC01426_UP_LS0007	chr21:34737487|34744028:+	LINC01426	long intergenic non-protein coding RNA 1426	lncRNA gene	no	.	4.863	2.461	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SIL1_LS0027	chr5:138955124|138962126:+	SIL1	SIL1 nucleotide exchange factor	protein coding gene	no	.	2.070	1.911	0.000	0.006(57)	0.01(7)	0(0)	non tumor-specific	nAS	no
MCM9_LS005	chr6:118828130|118829048:-	MCM9	minichromosome maintenance 9 homologous recombination repair factor	protein coding gene	yes	ENST00000316316.10;ENST00000619706.4;ENST00000505485.1	5.265	4.045	3.956	0.863(8266)	0.943(662)	0.932(16199)	non tumor-specific	exon_skip	yes
IFT122_LS002	chr3:129449937|129451914:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000431818.6;ENST00000440957.6;ENST00000347300.6;ENST00000296266.7;ENST00000507564.5;ENST00000512220.5;ENST00000504021.5;ENST00000349441.6;ENST00000348417.6;ENST00000506507.5;ENST00000504653.5;ENST00000510524.5;ENST00000502456.5;ENST00000502304.5;ENST00000514275.5;ENST00000508826.5;ENST00000509815.1;ENST00000512157.5;ENST00000515783.5	7.838	6.277	11.566	0.964(9238)	0.984(691)	0.97(16852)	non tumor-specific	exon_skip	yes
UN_CDIPT_LS0067	chr16:29859072|29859119:+	CDIPT	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	protein coding gene	no	.	7.187	0.619	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SP140_LS0019	chr2:230251061|230253334:+	SP140	SP140 nuclear body protein	protein coding gene	no	.	4.280	1.234	0.000	0.025(237)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC243967.2_LS001	chr19:41758081|41786511:-	AC243967.2	-	lncRNA gene	no	ENST00000601409.1	0.014	0.006	0.668	0.009(85)	0.016(11)	0(8)	non tumor-specific	nAS	yes
PTOV1_LS002	chr19:49851096|49854406:+	PTOV1	PTOV1 extended AT-hook containing adaptor protein	protein coding gene	no	ENST00000594151.5;ENST00000601501.5	0.048	0.063	2.054	0.929(8896)	0.927(651)	0.854(14840)	non tumor-specific	alt_5prime	yes
UN_ZNF529_LS0033	chr19:36573440|36574821:+	ZNF529	zinc finger protein 529	protein coding gene	no	.	0.812	0.059	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLHL36_LS004	chr16:84649318|84650852:+	KLHL36	kelch like family member 36	protein coding gene	no	ENST00000565743.1	0.448	0.216	0.728	0.332(3185)	0.311(218)	0.263(4579)	non tumor-specific	alt_5prime	yes
UN_BRD3OS_UP_LS0001	chr9:133634698|133636597:+	BRD3OS	BRD3 opposite strand	protein coding gene	no	.	1.456	0.764	0.000	0.002(19)	0.017(12)	0(0)	non tumor-specific	nAS	no
GGT4P_LS001	chr13:18253672|18253977:-	GGT4P	gamma-glutamyltransferase 4 pseudogene	pseudogene	no	ENST00000623672.1	3.500	1.864	1.332	0.121(1162)	0.141(99)	0.148(2576)	non tumor-specific	nAS	yes
DDX5_LS027	chr17:64504318|64504677:-	DDX5	DEAD-box helicase 5	protein coding gene	no	ENST00000581230.5;ENST00000225792.9;ENST00000450599.6;ENST00000578804.5;ENST00000578400.5;ENST00000630471.2;ENST00000577922.5;ENST00000581697.5;ENST00000581806.5;ENST00000578190.5;ENST00000583239.6;ENST00000579091.5;ENST00000585060.5;ENST00000584279.5;ENST00000583212.1	221.532	156.545	616.717	0.996(9538)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SHLD2_LS006	chr10:87151832|87158048:+	SHLD2	shieldin complex subunit 2	protein coding gene	no	.;.	1.876	0.756	0.000	0.058(555)	0.05(35)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ALOX15B_LS0009	chr17:8042491|8042789:+	ALOX15B	arachidonate 15-lipoxygenase type B	protein coding gene	yes	.	1.280	0.245	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MAD1L1_LS0193	chr7:2149238|2209947:-	MAD1L1	mitotic arrest deficient 1 like 1	protein coding gene	yes	.	0.117	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ATP1A4_LS016	chr1:160174261|160174579:+	ATP1A4	ATPase Na+/K+ transporting subunit alpha 4	protein coding gene	no	ENST00000368081.8;ENST00000477338.5;ENST00000469023.5;ENST00000418334.5	3.047	0.207	1.121	0.014(138)	0.013(9)	0.347(6029)	non tumor-specific	intron_retention	yes
UN_ZUP1_LS0008	chr6:116658924|116666634:-	ZUP1	zinc finger containing ubiquitin peptidase 1	protein coding gene	no	.	1.311	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	exon_skip	no
LAMTOR3_LS001	chr4:99878774|99881978:-	LAMTOR3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein coding gene	no	.;.;.	5.263	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MICAL1_LS028	chr6:109448393|109448732:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	ENST00000456101.6;ENST00000358577.7;ENST00000358807.7;ENST00000630715.2;ENST00000433205.1	46.570	30.090	64.511	0.983(9419)	0.969(680)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TNFRSF25_LS035	chr1:6465560|6466069:-	TNFRSF25	TNF receptor superfamily member 25	protein coding gene	no	ENST00000485036.5;ENST00000480393.5;ENST00000377782.7;ENST00000356876.7;ENST00000351959.9;ENST00000414040.6;ENST00000351748.7;ENST00000348333.7;ENST00000502588.5;ENST00000502730.5;ENST00000510563.5;ENST00000461703.6;ENST00000453341.1	0.952	0.455	4.375	0.652(6247)	0.533(374)	0.867(15071)	non tumor-specific	intron_retention	yes
UN_RNA5SP75_UP_LS0008	chr1:204717574|204725113:-	RNA5SP75	RNA, 5S ribosomal pseudogene 75	no	no	.	3.457	1.376	0.000	0.001(12)	0.04(28)	0(0)	non tumor-specific	nAS	no
HNRNPC_LS013	chr14:21230366|21230958:-	HNRNPC	heterogeneous nuclear ribonucleoprotein C	protein coding gene	no	ENST00000556142.5;ENST00000554455.5;ENST00000555309.5;ENST00000556513.5;ENST00000557201.5;ENST00000420743.6;ENST00000555215.5;ENST00000555137.5	54.825	32.827	112.129	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
C15orf41_LS023	chr15:36702093|36709223:+	C15orf41	CDAN1 interacting nuclease 1	protein coding gene	no	ENST00000562489.1	0.060	0.000	0.659	0.002(18)	0.001(1)	0.004(62)	non tumor-specific	nAS	yes
UN_AC093607.1_LS0014	chr4:23725493|23727271:-	AC093607.1	-	lncRNA gene	no	.	16.248	1.770	0.000	0.025(241)	0.036(25)	0(0)	non tumor-specific	nAS	no
TRDN_LS044	chr6:123548612|123570923:-	TRDN	triadin	protein coding gene	no	ENST00000334268.8;ENST00000628709.2;ENST00000546248.5;ENST00000542443.5	9.771	3.862	2.522	0.06(574)	0.184(129)	0.609(10580)	non tumor-specific	nAS	yes
EML5_LS012	chr14:88622718|88624970:-	EML5	EMAP like 5	protein coding gene	no	ENST00000554922.5;ENST00000553526.5;ENST00000380664.9;ENST00000555823.1;ENST00000553281.5	1.211	0.348	1.811	0.098(936)	0.161(113)	0.614(10669)	non tumor-specific	exon_skip	yes
PPA2_LS014	chr4:105405948|105424196:-	PPA2	inorganic pyrophosphatase 2	protein coding gene	no	ENST00000506815.5;ENST00000457404.6	0.418	0.276	1.428	0.713(6833)	0.782(549)	0.687(11936)	non tumor-specific	exon_skip	yes
UN_MED19_LS0006	chr11:57705010|57705131:-	MED19	mediator complex subunit 19	protein coding gene	no	.	18.458	1.611	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_FTSJ3_LS0001	chr17:63819615|63819692:+	FTSJ3	FtsJ RNA 2'-O-methyltransferase 3	protein coding gene	no	.	1.274	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BOK_LS0156	chr2:241572953|241573196:-	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	9.212	5.000	0.000	0.013(123)	0.068(48)	0(0)	non tumor-specific	nAS	no
MED12L_LS002	chr3:151087025|151116338:+	MED12L	mediator complex subunit 12L	protein coding gene	no	ENST00000422248.6;ENST00000309237.8;ENST00000474524.5;ENST00000273432.8	1.176	0.139	0.985	0.103(986)	0.01(7)	0.243(4227)	non tumor-specific	nAS	yes
UN_LRRFIP2_LS0044	chr3:37162148|37174539:-	LRRFIP2	LRR binding FLII interacting protein 2	protein coding gene	no	.	3.716	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
LGMN_LS010	chr14:92711748|92711837:-	LGMN	legumain	protein coding gene	no	ENST00000555699.5;ENST00000334869.8;ENST00000557434.5;ENST00000393218.6;ENST00000557609.5;ENST00000557725.5;ENST00000556097.5	136.387	129.137	97.482	0.992(9508)	0.997(700)	0.978(17005)	non tumor-specific	alt_3prime	yes
GPAT4_LS020	chr8:41610810|41611903:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	ENST00000396987.7;ENST00000521806.5;ENST00000519921.5;ENST00000523906.1	81.965	43.644	45.423	0.995(9531)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LINC02128_LS003	chr16:50884322|50884482:+	LINC02128	long intergenic non-protein coding RNA 2128	lncRNA gene	no	ENST00000570245.5;ENST00000567534.2	1.001	0.211	0.946	0.051(489)	0.08(56)	0.043(740)	non tumor-specific	nAS	yes
UN_RXRB_LS0050	chr6:33199206|33200242:-	RXRB	retinoid X receptor beta	protein coding gene	no	.	1.374	0.567	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
GIN1_LS011	chr5:103106909|103108569:-	GIN1	gypsy retrotransposon integrase 1	protein coding gene	no	ENST00000399004.6;ENST00000508629.5;ENST00000513603.1	1.727	2.007	4.695	0.901(8635)	0.96(674)	0.936(16264)	non tumor-specific	exon_skip	yes
UN_POLR3B_LS0018	chr12:106494116|106496055:+	POLR3B	RNA polymerase III subunit B	protein coding gene	no	.	0.619	0.213	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
PSMD2_LS006	chr3:184301658|184301771:+	PSMD2	proteasome 26S subunit, non-ATPase 2	protein coding gene	no	ENST00000459910.5;ENST00000463602.1	0.047	0.067	1.350	0.538(5158)	0.54(379)	0.692(12033)	non tumor-specific	alt_3prime;intron_retention	yes
GPAT3_LS007	chr4:83587329|83588210:+	GPAT3	glycerol-3-phosphate acyltransferase 3	protein coding gene	no	ENST00000611707.4;ENST00000395226.6;ENST00000264409.4	12.778	24.335	5.392	0.651(6240)	0.954(670)	0.894(15540)	non tumor-specific	exon_skip	yes
UN_RAB5CP2_UP_LS0005	chr5:91418771|91470838:+	RAB5CP2	RAB5C, member RAS oncogene family pseudogene 2	pseudogene	no	.	1.866	0.863	0.000	0.089(855)	0.121(85)	0(0)	non tumor-specific	nAS	no
MIATNB_LS011	chr22:26718231|26774156:+	MIATNB	MIAT neighbor	lncRNA gene	no	ENST00000440816.5	0.078	0.040	0.706	0.16(1536)	0.184(129)	0.158(2745)	non tumor-specific	nAS	yes
UN_HRH2_LS0011	chr5:175660691|175682709:+	HRH2	histamine receptor H2	protein coding gene	no	.	2.243	0.251	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ECT2_LS027	chr3:172783909|172784707:+	ECT2	epithelial cell transforming 2	protein coding gene	yes	ENST00000232458.9;ENST00000540509.5;ENST00000392692.7;ENST00000417960.5;ENST00000441497.6	25.033	5.026	4.613	0.938(8988)	0.902(633)	0.927(16111)	non tumor-specific	exon_skip	yes
UN_RF00002_UP_LS0087	chr22:11849410|11868679:-	RF00002	-	small non-coding RNA gene	no	.	2.960	0.367	0.000	0.041(393)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_FBH1_LS0004	chr10:5890346|5893977:+	FBH1	F-box DNA helicase 1	protein coding gene	no	.	1.109	0.409	0.000	0.051(491)	0.037(26)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
OCA2_LS023	chr15:28028059|28032065:-	OCA2	OCA2 melanosomal transmembrane protein	protein coding gene	no	ENST00000353809.9;ENST00000354638.7;ENST00000445578.5;ENST00000431101.1	7.865	1.863	2.148	0.175(1674)	0.202(142)	0.492(8553)	non tumor-specific	exon_skip	yes
UN_PPIH_LS0015	chr1:42668151|42675288:+	PPIH	peptidylprolyl isomerase H	protein coding gene	no	.	3.364	0.181	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LINC00945_LS002	chr21:33058204|33062792:+	LINC00945	long intergenic non-protein coding RNA 945	lncRNA gene	no	ENST00000453716.1	1.088	0.000	0.969	0.001(6)	0(0)	0.002(31)	non tumor-specific	nAS	yes
UN_CD320_LS0014	chr19:8303953|8305031:-	CD320	CD320 molecule	protein coding gene	no	.	2.776	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CAPN3_LS054	chr15:42411000|42411287:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000357568.7;ENST00000349748.7;ENST00000397163.7;ENST00000638141.1;ENST00000397200.8;ENST00000569827.5;ENST00000337571.8;ENST00000356316.7;ENST00000569136.5;ENST00000561817.5;ENST00000397204.8;ENST00000565274.5;ENST00000564503.5;ENST00000466222.6;ENST00000567817.5;ENST00000568153.1	25.595	11.018	69.762	0.964(9235)	0.977(686)	0.979(17021)	non tumor-specific	alt_5prime	yes
OTUD6B_LS008	chr8:91084114|91084784:+	OTUD6B	OTU deubiquitinase 6B	protein coding gene	no	ENST00000617869.4;ENST00000615618.1;ENST00000285420.8;ENST00000522894.5;ENST00000404789.7	14.422	6.462	9.831	0.947(9074)	0.97(681)	0.963(16738)	non tumor-specific	nAS	yes
F12_LS008	chr5:177402863|177403254:-	F12	coagulation factor XII	protein coding gene	no	ENST00000514943.1	0.346	0.102	1.311	0.358(3428)	0.154(108)	0.239(4149)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TM7SF2_LS0020	chr11:65115564|65116030:-	TM7SF2	transmembrane 7 superfamily member 2	protein coding gene	no	.	6.790	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GABRG3_LS010	chr15:27527629|27527933:+	GABRG3	gamma-aminobutyric acid type A receptor subunit gamma3	protein coding gene	no	ENST00000615808.4;ENST00000333743.10;ENST00000451330.2	6.421	1.197	1.921	0.183(1755)	0.13(91)	0.198(3449)	non tumor-specific	nAS	yes
UN_CDK2_LS0001	chr12:55966865|55966957:+	CDK2	cyclin dependent kinase 2	protein coding gene	yes	.	2.549	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CTNNBL1_LS007	chr20:37733067|37737378:+	CTNNBL1	catenin beta like 1	protein coding gene	no	ENST00000621317.4;ENST00000405275.6;ENST00000361383.10;ENST00000447935.3;ENST00000628103.2	80.982	46.761	40.784	0.992(9508)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BDH1_LS0108	chr3:197564096|197573181:-	BDH1	3-hydroxybutyrate dehydrogenase 1	protein coding gene	no	.	3.182	1.811	0.000	0.022(207)	0.05(35)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_OCLN_LS0032	chr5:69515375|69515503:-	OCLN	occludin	protein coding gene	no	.	3.962	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MELTF-AS1_UP_LS0015	chr3:196977204|196978238:+	MELTF-AS1	MELTF antisense RNA 1	lncRNA gene	no	.	0.787	0.095	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
AEBP2_LS012	chr12:19518113|19552853:+	AEBP2	AE binding protein 2	protein coding gene	no	ENST00000398731.3	2.368	1.256	2.450	0.851(8157)	0.9(632)	0.839(14585)	non tumor-specific	exon_skip	yes
UN_HBP1_LS0011	chr7:107195946|107195974:-	HBP1	HMG-box transcription factor 1	protein coding gene	yes	.	2.410	0.947	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
AL162258.2_LS004	chr1:153633157|153633958:-	AL162258.2	-	lncRNA gene	no	ENST00000469931.2	0.198	0.150	2.953	0.254(2434)	0.291(204)	0.872(15163)	non tumor-specific	alt_3prime;exon_skip	yes
POLR3A_LS003	chr10:77980273|77981428:-	POLR3A	RNA polymerase III subunit A	protein coding gene	no	ENST00000616246.4;ENST00000372371.7	25.803	13.353	15.793	0.994(9521)	0.994(698)	0.978(16999)	non tumor-specific	nAS	yes
UN_AKR7A3_LS0010	chr1:19285995|19286185:-	AKR7A3	aldo-keto reductase family 7 member A3	protein coding gene	no	.	16.724	11.326	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC012358.3_LS028	chr2:55332261|55339150:+	AC012358.3	-	lncRNA gene	no	ENST00000629859.2	1.753	0.000	0.624	0(1)	0(0)	0.001(21)	non tumor-specific	nAS	yes
CDK15_LS011	chr2:201822903|201833848:+	CDK15	cyclin dependent kinase 15	protein coding gene	no	ENST00000488419.1	1.472	0.000	0.517	0.001(12)	0(0)	0.001(12)	non tumor-specific	exon_skip	yes
UNC13D_LS028	chr17:75839942|75840018:-	UNC13D	unc-13 homolog D	protein coding gene	no	ENST00000207549.8;ENST00000412096.6;ENST00000587105.1;ENST00000587504.5	16.981	8.746	10.053	0.849(8132)	0.836(587)	0.955(16604)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GPS1_LS0025	chr17:82054633|82054691:-	GPS1	G protein pathway suppressor 1	protein coding gene	no	.	2.572	0.947	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	nAS	no
SCYL3_LS015	chr1:169869128|169870255:-	SCYL3	SCY1 like pseudokinase 3	protein coding gene	no	ENST00000470238.1	0.604	0.380	2.031	0.679(6509)	0.724(508)	0.82(14253)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_STK19_LS0034	chr6:31979577|31980451:+	STK19	serine/threonine kinase 19	protein coding gene	no	.	2.909	0.127	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_PPP1CC_LS0015	chr12:110722269|110722624:-	PPP1CC	protein phosphatase 1 catalytic subunit gamma	protein coding gene	no	.	16.621	6.395	0.000	0.011(109)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
SIRLNT_LS002	chr8:40299454|40343278:-	SIRLNT	SIRT1 regulating lncRNA tumor promoter	lncRNA gene	no	ENST00000522486.1	0.440	0.227	2.965	0.035(334)	0.168(118)	0.005(83)	non tumor-specific	nAS	yes
UN_BCOR_LS0029	chrX:40077969|40096460:-	BCOR	BCL6 corepressor	protein coding gene	no	.	1.234	0.322	0.000	0.022(210)	0.021(15)	0(0)	non tumor-specific	nAS	no
CGREF1_LS014	chr2:27101888|27102097:-	CGREF1	cell growth regulator with EF-hand domain 1	protein coding gene	no	ENST00000640154.1;ENST00000402394.5;ENST00000405600.5;ENST00000260595.9;ENST00000312734.8;ENST00000404694.3	17.117	6.494	5.175	0.782(7491)	0.736(517)	0.868(15092)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FAM19A2_LS013	chr12:61867426|62191912:-	FAM19A2	TAFA chemokine like family member 2	protein coding gene	no	.;.	2.159	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
NET1_LS008	chr10:5451937|5452358:+	NET1	solute carrier family 6 member 5	protein coding gene	yes	ENST00000355029.8;ENST00000486354.1;ENST00000380359.3	68.099	57.404	36.830	0.971(9305)	0.99(695)	0.973(16909)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SH3D19_LS0057	chr4:151226240|151325241:-	SH3D19	SH3 domain containing 19	protein coding gene	no	.	1.101	0.332	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_BCL9_LS0034	chr1:147624453|147624562:+	BCL9	BCL9 transcription coactivator	protein coding gene	yes	.	6.461	0.585	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC3_LS080	chr21:37200324|37201440:+	TTC3	tetratricopeptide repeat domain 3	protein coding gene	no	ENST00000355666.5;ENST00000399017.6;ENST00000354749.6;ENST00000479930.5;ENST00000476784.5;ENST00000428693.1	166.942	110.877	68.936	0.995(9534)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_ATP13A4_LS0042	chr3:193533680|193540010:+	ATP13A4	ATPase 13A4	protein coding gene	no	.	8.860	3.283	0.000	0.001(14)	0.027(19)	0(0)	non tumor-specific	nAS	no
ALS2CL_LS045	chr3:46682094|46683134:-	ALS2CL	ALS2 C-terminal like	protein coding gene	no	ENST00000423707.5	0.599	0.393	0.754	0.204(1954)	0.34(239)	0.153(2651)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BCAP29_LS0030	chr7:107616494|107618328:+	BCAP29	B cell receptor associated protein 29	protein coding gene	no	.	2.445	1.867	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZDBF2_LS012	chr2:206306875|206307047:+	ZDBF2	zinc finger DBF-type containing 2	protein coding gene	no	ENST00000650097.1;ENST00000649285.1;ENST00000649998.1	1.670	0.513	0.000	0.037(354)	0.033(23)	0(0)	non tumor-specific	nAS	yes
UN_GXYLT2_LS0030	chr3:72961215|72967547:+	GXYLT2	glucoside xylosyltransferase 2	protein coding gene	no	.	1.906	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STX6_LS0016	chr1:181002694|181003640:-	STX6	syntaxin 6	protein coding gene	no	.	1.794	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
BABAM2_LS015	chr2:28237301|28241323:+	BABAM2	BRISC and BRCA1 A complex member 2	protein coding gene	no	ENST00000344773.6;ENST00000379624.5;ENST00000342045.6;ENST00000379632.6;ENST00000361704.6	87.682	65.583	53.328	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AC244154.1_LS006	chr17:38202334|38202736:-	AC244154.1	-	pseudogene	no	ENST00000620148.2	3.042	2.145	0.631	0.747(7161)	0.795(558)	0.024(412)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NOMO2_LS0446	chr16:18431866|18513409:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	46.212	2.848	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
CSMD2_LS046	chr1:33633535|33635214:-	CSMD2	CUB and Sushi multiple domains 2	protein coding gene	no	ENST00000373381.8;ENST00000373388.6;ENST00000619121.4;ENST00000241312.8;ENST00000373380.5	2.726	0.523	1.254	0.107(1021)	0.013(9)	0.345(6002)	non tumor-specific	nAS	yes
UN_NBPF8_UP_LS0022	chr1:120415304|120417194:+	NBPF8	NBPF member 8	pseudogene	no	.	1.669	0.319	0.000	0.013(120)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_FBLN7_LS0026	chr2:112175839|112178056:+	FBLN7	fibulin 7	protein coding gene	no	.	2.473	0.426	0.000	0.044(425)	0.033(23)	0(0)	non tumor-specific	nAS	no
NSMCE2_LS001	chr8:125091900|125102014:+	NSMCE2	NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase	protein coding gene	no	ENST00000523741.5	0.028	0.034	0.694	0.556(5328)	0.566(397)	0.194(3380)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZFP14_LS002	chr19:36341590|36360435:-	ZFP14	ZFP14 zinc finger protein	protein coding gene	no	ENST00000270001.11	4.002	2.685	1.596	0.76(7285)	0.85(597)	0.743(12916)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LCP2_LS0018	chr5:170269853|170270719:-	LCP2	lymphocyte cytosolic protein 2	protein coding gene	no	.	3.464	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_Z82190.2_LS0032	chr22:31906066|31906211:+	Z82190.2	-	protein coding gene	no	.	6.232	0.485	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_ZNF518A_LS0014	chr10:96135289|96155326:+	ZNF518A	zinc finger protein 518A	protein coding gene	no	.	2.901	0.105	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HSPD1_LS0024	chr2:197489247|197489501:-	HSPD1	heat shock protein family D (Hsp60) member 1	protein coding gene	yes	.	19.973	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
MUC4_LS002	chr3:195749064|195750889:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	ENST00000308466.12;ENST00000448861.5;ENST00000339251.9;ENST00000415455.5;ENST00000392407.6;ENST00000349607.8;ENST00000346145.8;ENST00000478156.5;ENST00000463781.7;ENST00000479406.5;ENST00000466475.5;ENST00000475231.5;ENST00000477086.5;ENST00000480843.5;ENST00000470451.5;ENST00000462323.5;ENST00000477756.5;ENST00000464234.5	13.384	10.550	2.517	0.457(4377)	0.429(301)	0.289(5032)	non tumor-specific	exon_skip	yes
ACAD9_LS017	chr3:128880017|128893555:+	ACAD9	acyl-CoA dehydrogenase family member 9	protein coding gene	no	ENST00000505867.5;ENST00000505867.5	2.924	1.852	0.758	0.696(6671)	0.783(550)	0.256(4452)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC099066.1_UP_LS0010	chr1:225842843|225846838:-	AC099066.1	-	lncRNA gene	no	.	5.432	0.807	0.000	0.02(188)	0.026(18)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
NVL_LS033	chr1:224308263|224317694:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000470903.5	0.030	0.034	1.235	0.607(5811)	0.601(422)	0.638(11095)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GET4_LS0070	chr7:893582|893615:+	GET4	guided entry of tail-anchored proteins factor 4	protein coding gene	no	.	17.614	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRIMA1_LS0046	chr14:93737370|93787626:-	PRIMA1	proline rich membrane anchor 1	protein coding gene	no	.	1.193	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
ACTN3_LS002	chr11:66547084|66551053:+	ACTN3	actinin alpha 3	protein coding gene	no	ENST00000511191.1	0.211	0.000	1.166	0.001(13)	0(0)	0.038(664)	non tumor-specific	nAS	yes
UN_FABP6_LS0004	chr5:160187454|160197070:+	FABP6	fatty acid binding protein 6	protein coding gene	no	.	4.312	2.590	0.000	0.011(102)	0.051(36)	0(0)	non tumor-specific	exon_skip	no
UN_HERC4_LS0063	chr10:68073686|68074831:-	HERC4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein coding gene	no	.	0.847	0.110	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ETNK1_LS003	chr12:22644022|22644211:+	ETNK1	ethanolamine kinase 1	protein coding gene	no	ENST00000335148.7	0.287	0.202	1.546	0.637(6104)	0.682(479)	0.667(11586)	non tumor-specific	intron_retention	yes
CCDC198_LS017	chr14:57491071|57493493:-	CCDC198	coiled-coil domain containing 198	protein coding gene	no	ENST00000216445.7;ENST00000422976.6;ENST00000534126.5;ENST00000530417.6;ENST00000526745.6;ENST00000526336.1	8.584	15.909	6.924	0.194(1863)	0.291(204)	0.068(1187)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FP700107.1_LS002	chr1:144664203|144669736:+	FP700107.1	-	pseudogene	no	ENST00000615237.1	4.505	0.429	0.650	0.001(6)	0.004(3)	0.001(22)	non tumor-specific	nAS	yes
FANCD2_LS047	chr3:10090385|10092181:+	FANCD2	FA complementation group D2	protein coding gene	no	ENST00000287647.7;ENST00000383807.5;ENST00000419585.5	19.998	3.536	4.498	0.879(8425)	0.718(504)	0.923(16039)	non tumor-specific	alt_3prime;exon_skip	yes
OSBPL3_LS006	chr7:24815203|24816610:-	OSBPL3	oxysterol binding protein like 3	protein coding gene	no	ENST00000313367.6;ENST00000409863.5;ENST00000396431.5;ENST00000409452.5;ENST00000409759.5;ENST00000409555.5;ENST00000396429.5;ENST00000409069.5	17.736	6.179	9.913	0.925(8861)	0.865(607)	0.959(16662)	non tumor-specific	exon_skip	yes
PMS2P10_LS001	chr7:75288213|75295941:-	PMS2P10	PMS1 homolog 2, mismatch repair system component pseudogene 10	pseudogene	no	ENST00000447708.2	1.924	0.961	2.403	0.865(8289)	0.885(621)	0.706(12268)	non tumor-specific	nAS	yes
UN_HS3ST2_UP_LS0004	chr16:22543431|22546963:+	HS3ST2	heparan sulfate-glucosamine 3-sulfotransferase 2	protein coding gene	no	.	1.286	0.120	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PODN_LS0017	chr1:53077800|53078369:+	PODN	podocan	protein coding gene	no	.	8.448	5.961	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
LMAN1_LS007	chr18:59347571|59349113:-	LMAN1	lectin, mannose binding 1	protein coding gene	no	ENST00000251047.5;ENST00000587940.1	92.126	66.334	23.022	0.985(9439)	0.997(700)	0.974(16923)	non tumor-specific	mutex_exons	yes
UN_RF02192_UP_LS0001	chr14:95621033|95652045:+	RF02192	-	small non-coding RNA gene	no	.	1.205	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
MEST_LS001	chr7:130486395|130495346:+	MEST	mesoderm specific transcript	protein coding gene	no	ENST00000378576.9	1.115	0.301	0.664	0.046(442)	0.03(21)	0.005(82)	non tumor-specific	alt_3prime	yes
NCOA3_LS007	chr20:47624083|47625381:+	NCOA3	nuclear receptor coactivator 3	protein coding gene	yes	ENST00000372004.7;ENST00000371998.7;ENST00000371997.3	15.812	9.432	8.989	0.839(8035)	0.917(644)	0.947(16463)	non tumor-specific	exon_skip	yes
UN_EEA1_LS0016	chr12:92802734|92811279:-	EEA1	early endosome antigen 1	protein coding gene	no	.	1.453	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC011979.1_UP_LS0002	chr11:9619942|9621279:+	AC011979.1	-	pseudogene	no	.	2.916	0.593	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ERG_LS0017	chr21:38503989|38539162:+	ERG	ETS transcription factor ERG	protein coding gene	yes	.	2.554	0.922	0.000	0.011(102)	0.07(49)	0(0)	non tumor-specific	nAS	no
UN_AC068888.1_LS0017	chr12:53040263|53054321:-	AC068888.1	-	lncRNA gene	no	.	0.755	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF557_LS003	chr19:7075105|7075655:+	ZNF557	zinc finger protein 557	protein coding gene	no	ENST00000252840.10	2.745	1.682	2.101	0.875(8388)	0.906(636)	0.857(14902)	non tumor-specific	alt_3prime	yes
UN_ZDHHC9_LS0043	chrX:129829141|129841931:-	ZDHHC9	zinc finger DHHC-type palmitoyltransferase 9	protein coding gene	no	.	5.497	0.044	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DDX23_LS024	chr12:48840151|48843940:-	DDX23	DEAD-box helicase 23	protein coding gene	no	ENST00000547135.5;ENST00000552555.1	0.089	0.071	1.350	0.3(2873)	0.311(218)	0.667(11602)	non tumor-specific	alt_3prime	yes
UN_TRPC3_UP_LS0001	chr4:121994493|122027919:-	TRPC3	transient receptor potential cation channel subfamily C member 3	protein coding gene	no	.	3.151	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
POLR3G_LS002	chr5:90474318|90485525:+	POLR3G	RNA polymerase III subunit G	protein coding gene	no	ENST00000505345.5;ENST00000503373.5	0.182	0.074	0.655	0.254(2434)	0.187(131)	0.115(2000)	non tumor-specific	alt_3prime	yes
UN_PRSS8_LS0097	chr16:31132219|31132725:+	PRSS8	serine protease 8	protein coding gene	no	.	9.626	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RP1_LS0008	chr8:54622288|54623492:+	RP1	serine/threonine kinase 19	protein coding gene	no	.	2.571	0.314	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MTM1_LS0017	chrX:150591041|150592605:+	MTM1	myotubularin 1	protein coding gene	no	.	0.745	0.417	0.000	0.012(112)	0.016(11)	0(0)	non tumor-specific	nAS	no
SIPA1L1_LS001	chr14:71320503|71321122:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000553453.5;ENST00000555989.5;ENST00000556408.5;ENST00000554126.5;ENST00000556780.5;ENST00000554362.5	0.493	0.202	1.051	0.168(1609)	0.168(118)	0.449(7798)	non tumor-specific	alt_5prime	yes
NFAT5_LS018	chr16:69655799|69659727:+	NFAT5	nuclear factor of activated T cells 5	protein coding gene	no	ENST00000426654.6;ENST00000349945.5;ENST00000354436.6;ENST00000567990.5;ENST00000567239.5;ENST00000627621.2;ENST00000393742.6;ENST00000566899.5	6.734	4.029	7.351	0.612(5866)	0.774(543)	0.944(16405)	non tumor-specific	exon_skip	yes
NMU_LS011	chr4:55607348|55607437:-	NMU	neuromedin U	protein coding gene	no	ENST00000511469.5;ENST00000264218.7;ENST00000507338.1	22.343	7.051	1.991	0.673(6450)	0.336(236)	0.475(8252)	non tumor-specific	alt_3prime;exon_skip	yes
ABTB1_LS009	chr3:127673383|127674391:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000467179.5;ENST00000467179.5;ENST00000467179.5	0.099	0.109	0.849	0.394(3771)	0.417(293)	0.382(6637)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_NYNRIN_LS0007	chr14:24405680|24407869:+	NYNRIN	NYN domain and retroviral integrase containing	protein coding gene	no	.	2.712	0.283	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
HECW2_LS023	chr2:196319904|196322478:-	HECW2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000647236.1	0.306	0.061	0.695	0.037(351)	0.048(34)	0.073(1262)	non tumor-specific	exon_skip	yes
NOMO2_LS022	chr16:18519660|18520597:-	NOMO2	NODAL modulator 2	protein coding gene	no	ENST00000330537.10;ENST00000381474.7;ENST00000564991.5;ENST00000622306.4;ENST00000621364.4;ENST00000543392.5	68.517	34.197	13.422	0.991(9495)	0.996(699)	0.976(16960)	non tumor-specific	nAS	yes
UN_CLDN4_LS0147	chr7:73831659|73831711:-	CLDN4	claudin 4	protein coding gene	no	.	33.146	21.862	0.000	0.011(106)	0.013(9)	0(0)	non tumor-specific	nAS	no
SYVN1_LS014	chr11:65129915|65130002:-	SYVN1	synoviolin 1	protein coding gene	no	ENST00000294256.12;ENST00000377190.7;ENST00000307289.10;ENST00000449943.5;ENST00000526060.5;ENST00000527765.1	88.456	52.473	60.676	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL359915.1_LS0012	chr1:119318875|119326963:-	AL359915.1	-	lncRNA gene	no	.	1.899	0.158	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
LEO1_LS008	chr15:51953263|51959899:-	LEO1	LEO1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000315141.5	2.503	1.249	0.660	0.795(7616)	0.771(541)	0.067(1161)	non tumor-specific	exon_skip	yes
MRPL51_LS001	chr12:6492467|6492862:-	MRPL51	mitochondrial ribosomal protein L51	protein coding gene	no	ENST00000229238.4;ENST00000537701.5;ENST00000543164.5;ENST00000538814.5;ENST00000543959.5;ENST00000540949.1	286.829	112.588	260.234	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ANKH_LS008	chr5:14745962|14749172:-	ANKH	ANKH inorganic pyrophosphate transport regulator	protein coding gene	no	ENST00000284268.7;ENST00000503939.5;ENST00000515517.1	94.436	65.285	55.160	0.992(9503)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_DOCK6_LS0047	chr19:11216250|11218469:+	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	.	1.745	0.846	0.000	0.004(41)	0.019(13)	0(0)	non tumor-specific	nAS	no
MILR1_LS006	chr17:64457684|64460822:+	MILR1	mast cell immunoglobulin like receptor 1	protein coding gene	no	ENST00000615220.4;ENST00000619286.4;ENST00000612535.4	4.877	1.998	4.534	0.779(7465)	0.765(537)	0.864(15021)	non tumor-specific	nAS	yes
KIZ_LS006	chr20:21132159|21136390:+	KIZ	kizuna centrosomal protein	protein coding gene	no	ENST00000612654.1;ENST00000619189.4;ENST00000620553.2	16.204	13.569	11.352	0.959(9192)	0.98(688)	0.973(16909)	non tumor-specific	nAS	yes
NFASC_LS005	chr1:204920740|204944226:+	NFASC	neurofascin	protein coding gene	no	ENST00000404977.6;ENST00000339876.10;ENST00000539706.5;ENST00000360049.8;ENST00000403080.5;ENST00000493914.5;ENST00000404076.5;ENST00000514644.5;ENST00000401399.5	4.300	5.788	6.479	0.486(4655)	0.758(532)	0.886(15399)	non tumor-specific	exon_skip	yes
LINC01482_LS002	chr17:68591878|68658648:+	LINC01482	long intergenic non-protein coding RNA 1482	lncRNA gene	no	ENST00000589610.5	0.221	0.001	0.712	0.001(7)	0.001(1)	0.001(19)	non tumor-specific	nAS	yes
UN_RPL14_LS0034	chr3:40462014|40462201:-	RPL14	ribosomal protein L14	protein coding gene	no	.	10.053	0.735	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6-243P_UP_LS0005	chr3:35394085|35412492:-	RNU6-243P	RNA, U6 small nuclear 243, pseudogene	small non-coding RNA gene	no	.	2.228	0.076	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EBF4_LS0023	chr20:2750957|2751700:+	EBF4	EBF family member 4	protein coding gene	no	.	2.072	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_5prime	no
FYCO1_LS012	chr3:45958619|45959393:-	FYCO1	FYVE and coiled-coil domain autophagy adaptor 1	protein coding gene	no	ENST00000535325.5;ENST00000296137.6	15.363	17.048	17.440	0.84(8044)	0.96(674)	0.967(16814)	non tumor-specific	alt_5prime	yes
CCDC39_LS012	chr3:180616363|180616516:-	CCDC39	coiled-coil domain containing 39	protein coding gene	no	ENST00000476379.5	2.444	1.599	1.674	0.066(630)	0.138(97)	0.688(11964)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CTNND1_LS0081	chr11:57816543|57816921:-	CTNND1	catenin delta 1	protein coding gene	yes	.	5.928	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
DNAJC11_LS025	chr1:6667810|6678394:-	DNAJC11	DnaJ heat shock protein family (Hsp40) member C11	protein coding gene	yes	ENST00000451196.5;ENST00000377577.9;ENST00000294401.11;ENST00000426784.1;ENST00000485073.5;ENST00000460594.5	48.684	40.111	23.199	0.994(9525)	0.997(700)	0.978(16993)	non tumor-specific	exon_skip	yes
ZYG11A_LS015	chr1:52885894|52886956:+	ZYG11A	zyg-11 family member A, cell cycle regulator	protein coding gene	no	ENST00000612017.4;ENST00000371532.5;ENST00000371528.1	5.940	1.455	1.175	0.254(2438)	0.258(181)	0.203(3523)	non tumor-specific	exon_skip	yes
SLK_LS001	chr10:103967895|103990675:+	SLK	STE20 like kinase	protein coding gene	no	ENST00000335753.8;ENST00000369755.3	9.052	8.905	13.598	0.871(8343)	0.937(658)	0.965(16765)	non tumor-specific	nAS	yes
UN_AC104248.1_LS0013	chr8:108918646|108918722:-	AC104248.1	-	lncRNA gene	no	.	1.603	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_A2M_LS0050	chr12:9090453|9091219:+	A2M	alpha-2-macroglobulin	protein coding gene	no	.	7.714	6.454	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC135048.1_LS0002	chr16:30948568|30956200:+	AC135048.1	-	lncRNA gene	no	.	2.052	0.525	0.000	0.011(108)	0.014(10)	0(0)	non tumor-specific	nAS	no
GOLGA3_LS019	chr12:132796220|132796539:-	GOLGA3	golgin A3	protein coding gene	no	ENST00000204726.7;ENST00000450791.6;ENST00000456883.6;ENST00000545875.4	28.396	18.030	12.505	0.958(9177)	0.967(679)	0.971(16883)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC015908.7_LS0027	chr17:10848045|10859382:+	AC015908.7	-	lncRNA gene	no	.	2.444	0.490	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF410_LS0012	chr14:73909430|73910244:+	ZNF410	zinc finger protein 410	protein coding gene	no	.	1.318	0.092	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
GTF2IRD1_LS002	chr7:74507676|74508075:+	GTF2IRD1	GTF2I repeat domain containing 1	protein coding gene	no	ENST00000476977.5	0.016	0.032	0.693	0.588(5637)	0.514(361)	0.164(2852)	non tumor-specific	nAS	yes
UN_DKK3_LS0031	chr11:11964643|11965857:+	DKK3	dickkopf WNT signaling pathway inhibitor 3	protein coding gene	yes	.	10.724	0.123	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC004066.1_UP_LS0002	chr4:105537203|105540054:-	AC004066.1	-	pseudogene	no	.	1.964	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SEZ6L_LS023	chr22:26365566|26375578:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	ENST00000494013.1;ENST00000494013.1	3.212	0.159	3.198	0.025(243)	0.006(4)	0.169(2941)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DCBLD2_LS0035	chr3:98867438|98881540:-	DCBLD2	discoidin, CUB and LCCL domain containing 2	protein coding gene	no	.	12.909	0.179	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC010486.2_UP_LS0011	chr5:84492310|84493069:+	AC010486.2	-	lncRNA gene	no	.	2.059	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
AOAH_LS001	chr7:36513380|36514472:-	AOAH	acyloxyacyl hydrolase	protein coding gene	no	ENST00000621510.1;ENST00000617267.4	0.087	0.206	2.100	0.631(6049)	0.667(468)	0.713(12392)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ZNRF1_UP_LS0001	chr16:74843878|74845223:+	ZNRF1	zinc and ring finger 1	protein coding gene	no	.	3.222	0.809	0.000	0.01(100)	0.057(40)	0(0)	non tumor-specific	nAS	no
NXPE3_LS006	chr3:101782780|101785402:+	NXPE3	neurexophilin and PC-esterase domain family member 3	protein coding gene	no	ENST00000495842.5;ENST00000273347.9;ENST00000474165.5;ENST00000491511.6;ENST00000477909.5	8.790	6.312	7.358	0.815(7809)	0.9(632)	0.953(16572)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SERBP1_LS0002	chr1:67409157|67409254:+	SERBP1	SERPINE1 mRNA binding protein 1	protein coding gene	no	.	1.124	0.202	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC112715.1_UP_LS0017	chr2:237228551|237257091:+	AC112715.1	-	lncRNA gene	no	.	3.440	0.401	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01138_LS0052	chr1:148433629|148435146:-	LINC01138	long intergenic non-protein coding RNA 1138	lncRNA gene	no	.	2.906	0.184	0.000	0.029(275)	0.001(1)	0(0)	non tumor-specific	nAS	no
SET_LS006	chr9:128690439|128691170:+	SET	SET nuclear proto-oncogene	protein coding gene	yes	ENST00000480217.5	0.016	0.014	0.613	0.856(8200)	0.856(601)	0.019(336)	non tumor-specific	alt_5prime	yes
SPDYE12P_LS005	chr7:74912147|74913151:-	SPDYE12P	speedy/RINGO cell cycle regulator family member E12, pseudogene	pseudogene	no	ENST00000618416.1	0.115	0.002	0.652	0.009(87)	0.001(1)	0.003(57)	non tumor-specific	nAS	yes
ERGIC2_LS021	chr12:29371670|29372464:-	ERGIC2	ERGIC and golgi 2	protein coding gene	no	ENST00000552132.5	0.025	0.000	0.603	0.041(396)	0.034(24)	0.02(343)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MTIF3_LS0026	chr13:27445156|27448756:-	MTIF3	mitochondrial translational initiation factor 3	protein coding gene	no	.	1.246	0.344	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CICP13_UP_LS0016	chr1:222051371|222101063:+	CICP13	capicua transcriptional repressor pseudogene 13	pseudogene	no	.	8.766	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BIVM-ERCC5_LS0023	chr13:102800735|102801439:+	BIVM-ERCC5	BIVM-ERCC5 readthrough	protein coding gene	no	.	0.538	0.060	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_CHTOP_LS0057	chr1:153643364|153645133:+	CHTOP	chromatin target of PRMT1	protein coding gene	no	.	6.379	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
AC087633.1_LS001	chr15:95034744|95035384:-	AC087633.1	-	lncRNA gene	no	ENST00000554649.1	0.417	0.031	0.639	0.024(233)	0.02(14)	0.008(139)	non tumor-specific	nAS	yes
UN_PARP6_LS0003	chr15:72242292|72242620:-	PARP6	poly(ADP-ribose) polymerase family member 6	protein coding gene	no	.	3.211	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NRXN3_LS027	chr14:79280538|79280853:+	NRXN3	neurexin 3	protein coding gene	no	ENST00000555073.5	0.797	0.000	0.723	0(4)	0(0)	0.019(322)	non tumor-specific	nAS	yes
TF_LS002	chr3:133746483|133748412:+	TF	transferrin	protein coding gene	no	ENST00000402696.8;ENST00000474287.5;ENST00000414694.5;ENST00000494430.5;ENST00000493011.5;ENST00000485977.1	44.795	105.428	3.292	0.428(4105)	0.584(410)	0.654(11360)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AGPAT3_UP_LS0002	chr21:43776336|43791350:+	AGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein coding gene	no	.	4.468	0.963	0.000	0.005(49)	0.009(6)	0(0)	non tumor-specific	nAS	no
PAX4_LS007	chr7:127613532|127613756:-	PAX4	paired box 4	protein coding gene	yes	ENST00000341640.6;ENST00000639438.1;ENST00000378740.6;ENST00000338516.7;ENST00000483494.5;ENST00000463946.5;ENST00000477423.1;ENST00000611453.1	1.697	0.278	0.844	0.021(198)	0.014(10)	0.021(361)	non tumor-specific	nAS	yes
FMO5_LS012	chr1:147212535|147213308:-	FMO5	flavin containing dimethylaniline monoxygenase 5	protein coding gene	no	ENST00000527849.5;ENST00000441068.6;ENST00000578284.5;ENST00000254090.8;ENST00000369272.7;ENST00000619062.1;ENST00000533174.5	11.468	27.921	5.057	0.784(7509)	0.952(668)	0.925(16081)	non tumor-specific	alt_5prime	yes
SLC11A2_LS029	chr12:51005436|51008586:-	SLC11A2	solute carrier family 11 member 2	protein coding gene	no	ENST00000550714.5	0.033	0.071	0.608	0.403(3860)	0.54(379)	0.004(70)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ST18_LS050	chr8:52409452|52409548:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000521549.5;ENST00000522102.5	0.095	0.001	2.070	0.04(387)	0.007(5)	0.089(1545)	non tumor-specific	alt_5prime	yes
UN_PALD1_LS0030	chr10:70531454|70532304:+	PALD1	phosphatase domain containing paladin 1	protein coding gene	no	.	1.707	0.375	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS0933	chr17:30458858|30472308:-	RF00019	-	small non-coding RNA gene	no	.	1.711	0.602	0.000	0.005(44)	0.007(5)	0(0)	non tumor-specific	nAS	no
KBTBD11-OT1_LS035	chr8:1925404|1926377:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000635773.1	10.967	8.595	22.398	0.875(8384)	0.906(636)	0.946(16451)	non tumor-specific	exon_skip	yes
PHTF1_LS006	chr1:113704167|113704666:-	PHTF1	putative homeodomain transcription factor 1	protein coding gene	no	ENST00000474926.5;ENST00000393357.6;ENST00000369598.5;ENST00000369600.5;ENST00000369604.5;ENST00000481652.1;ENST00000357783.6	15.008	7.969	7.401	0.972(9310)	0.979(687)	0.967(16815)	non tumor-specific	exon_skip	yes
MTHFR_LS021	chr1:11803126|11803405:-	MTHFR	methylenetetrahydrofolate reductase	protein coding gene	no	ENST00000641805.1;ENST00000423400.7	0.652	0.312	0.000	0.01(93)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC051619.4_LS001	chr15:45170534|45199858:+	AC051619.4	-	lncRNA gene	no	ENST00000560034.1	0.176	0.059	0.693	0.059(565)	0.054(38)	0.009(153)	non tumor-specific	nAS	yes
MIGA2_LS032	chr9:129067871|129068198:+	MIGA2	mitoguardin 2	protein coding gene	no	ENST00000439290.5;ENST00000358369.8;ENST00000474639.5;ENST00000471943.1	11.610	10.891	28.089	0.985(9439)	0.994(698)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC068234.1_LS0036	chr17:47312510|47312558:+	AC068234.1	-	protein coding gene	no	.	5.456	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ENAM_LS0038	chr4:70666899|70676883:-	ENAM	enamelin	protein coding gene	no	.	3.112	2.059	0.000	0.002(18)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_STK32B_UP_LS0012	chr4:4969682|4977812:+	STK32B	serine/threonine kinase 32B	protein coding gene	no	.	3.140	0.227	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AK4P4_UP_LS0021	chr9:5875063|5910615:-	AK4P4	adenylate kinase 4 pseudogene 4	pseudogene	no	.	2.849	0.031	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EGLN1_LS0002	chr1:231364222|231364443:+	EGLN1	egl-9 family hypoxia inducible factor 1	protein coding gene	yes	.	1.492	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PPP6R3_LS010	chr11:68515166|68519501:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000528635.5;ENST00000529344.5	0.093	0.045	0.832	0.431(4131)	0.564(396)	0.417(7249)	non tumor-specific	exon_skip;mutex_exons	yes
FBN3_LS054	chr19:8126605|8126713:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	6.692	0.682	1.022	0.123(1176)	0.171(120)	0.14(2440)	non tumor-specific	nAS	yes
RAB3IP_LS004	chr12:69755478|69755571:+	RAB3IP	RAB3A interacting protein	protein coding gene	no	ENST00000547591.5	0.491	0.245	1.130	0.755(7230)	0.779(547)	0.561(9756)	non tumor-specific	exon_skip;intron_retention	yes
XPO1_LS026	chr2:61502040|61522611:-	XPO1	exportin 1	protein coding gene	no	.;.	0.343	0.045	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SMYD4_LS016	chr17:1828006|1830593:-	SMYD4	SET and MYND domain containing 4	protein coding gene	yes	ENST00000571854.5	0.162	0.037	0.618	0.034(327)	0.027(19)	0.006(99)	non tumor-specific	nAS	yes
UN_NCBP1_LS0011	chr9:97658570|97658690:+	NCBP1	nuclear cap binding protein subunit 1	protein coding gene	no	.	2.161	0.125	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_TPST2_LS0056	chr22:26565636|26590053:-	TPST2	tyrosylprotein sulfotransferase 2	protein coding gene	no	.	1.034	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TMEM45A_LS015	chr3:100571319|100576925:+	TMEM45A	transmembrane protein 45A	protein coding gene	no	ENST00000488904.1	0.249	0.685	1.376	0.469(4494)	0.386(271)	0.522(9082)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPL10A_LS0007	chr6:35469027|35469315:+	RPL10A	ribosomal protein L10a	protein coding gene	no	.	413.264	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AGBL5_LS010	chr2:27053173|27053402:+	AGBL5	ATP/GTP binding protein like 5	protein coding gene	no	ENST00000453161.5;ENST00000487078.5;ENST00000477136.5;ENST00000323064.12;ENST00000489683.5;ENST00000360131.4	36.477	26.613	21.418	0.983(9419)	0.991(696)	0.978(17006)	non tumor-specific	exon_skip	yes
C1orf109_LS012	chr1:37689886|37690002:-	C1orf109	chromosome 1 open reading frame 109	protein coding gene	no	ENST00000472584.1	0.455	0.399	1.221	0.768(7360)	0.789(554)	0.62(10771)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
SPOP_LS013	chr17:49619385|49620621:-	SPOP	speckle type BTB/POZ protein	protein coding gene	yes	ENST00000513080.5	0.235	0.407	0.815	0.056(534)	0.077(54)	0.25(4340)	non tumor-specific	exon_skip	yes
UN_ATP6V0A1_LS0069	chr17:42522375|42522417:-	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	.	1.871	0.137	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADCK1_LS014	chr14:77902748|77907803:+	ADCK1	aarF domain containing kinase 1	protein coding gene	no	ENST00000555333.1	0.254	0.126	1.032	0.353(3382)	0.336(236)	0.476(8272)	non tumor-specific	exon_skip	yes
Z83844.1_LS014	chr22:37701479|37710427:+	Z83844.1	-	protein coding gene	no	ENST00000455236.4	1.052	0.399	1.064	0.131(1253)	0.043(30)	0.515(8956)	non tumor-specific	nAS	yes
UN_CCDC40_LS0031	chr17:80088189|80089764:+	CCDC40	coiled-coil domain containing 40	protein coding gene	no	.	3.883	0.772	0.000	0.017(161)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_AHNAK_LS1224	chr11:62528583|62528737:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	1.515	0.271	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	nAS	no
SEMA3F_LS009	chr3:50173953|50174052:+	SEMA3F	semaphorin 3F	protein coding gene	yes	ENST00000414301.5;ENST00000450338.5;ENST00000413852.5;ENST00000002829.7;ENST00000434342.5;ENST00000420831.1	41.827	24.668	25.363	0.934(8953)	0.959(673)	0.941(16350)	non tumor-specific	alt_5prime	yes
UN_MED12_LS0052	chrX:71141370|71141895:+	MED12	mediator complex subunit 12	protein coding gene	no	.	8.837	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_LSM12_LS0016	chr17:44040256|44052634:-	LSM12	LSM12 homolog	protein coding gene	no	.	1.200	1.118	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
CMBL_LS009	chr5:10290781|10307625:-	CMBL	carboxymethylenebutenolidase homolog	protein coding gene	no	ENST00000296658.3;ENST00000506821.1;ENST00000514202.1	18.647	30.991	16.731	0.938(8990)	0.974(684)	0.96(16684)	non tumor-specific	exon_skip	yes
SCIMP_LS001	chr17:5210955|5214925:-	SCIMP	SLP adaptor and CSK interacting membrane protein	protein coding gene	no	ENST00000574081.5;ENST00000399600.8	5.801	3.660	2.151	0.647(6197)	0.714(501)	0.617(10733)	non tumor-specific	alt_3prime	yes
UN_BHLHE40-AS1_UP_LS0007	chr3:5012014|5025512:-	BHLHE40-AS1	BHLHE40 antisense RNA 1	lncRNA gene	no	.	1.796	0.206	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
MCRS1_LS016	chr12:49565667|49566077:-	MCRS1	microspherule protein 1	protein coding gene	no	ENST00000551625.5;ENST00000343810.8;ENST00000550165.5;ENST00000357123.8;ENST00000553173.5;ENST00000548334.5;ENST00000548596.5;ENST00000552206.1	53.139	31.404	46.713	0.995(9530)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ARFGAP2_LS003	chr11:47166599|47166760:-	ARFGAP2	ADP ribosylation factor GTPase activating protein 2	protein coding gene	no	ENST00000426335.6;ENST00000627920.2;ENST00000524782.5;ENST00000395449.7;ENST00000533243.5;ENST00000527776.5;ENST00000526342.5	140.196	96.750	71.269	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
AL157935.2_LS033	chr9:127905302|127905935:-	AL157935.2	-	protein coding gene	no	ENST00000643029.1;ENST00000643338.1	2.549	1.801	0.000	0.249(2388)	0.261(183)	0(0)	non tumor-specific	alt_3prime	yes
INSC_LS012	chr11:15200949|15221477:+	INSC	INSC spindle orientation adaptor protein	protein coding gene	no	ENST00000379554.7;ENST00000379556.7;ENST00000528567.5;ENST00000424273.5;ENST00000530161.5	3.122	1.005	1.755	0.115(1100)	0.232(163)	0.528(9178)	non tumor-specific	exon_skip	yes
OAS3_LS013	chr12:112964408|112965897:+	OAS3	2'-5'-oligoadenylate synthetase 3	protein coding gene	no	ENST00000546973.1	0.657	0.254	0.830	0.675(6469)	0.682(479)	0.28(4867)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC006262.4_UP_LS0001	chr19:46255403|46256101:-	AC006262.4	-	pseudogene	no	.	3.053	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM9B_LS0014	chrX:9162904|9164441:-	FAM9B	family with sequence similarity 9 member B	protein coding gene	no	.	1.413	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
IL31_LS001	chr12:122172741|122173844:-	IL31	interleukin 31	protein coding gene	no	ENST00000377035.1	1.163	0.000	0.701	0.006(57)	0(0)	0.004(70)	non tumor-specific	nAS	yes
UN_HSPG2_LS0218	chr1:21829560|21830024:+	HSPG2	heparan sulfate proteoglycan 2	protein coding gene	no	.	9.801	0.043	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC087482.1_LS0032	chr15:66990043|67009318:-	AC087482.1	-	lncRNA gene	no	.	2.924	0.233	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IGKV1OR2-108_UP_LS0034	chr2:113394540|113394943:+	IGKV1OR2-108	immunoglobulin kappa variable 1/OR2-108 (non-functional)	no	no	.	0.789	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
NCK1_LS018	chr3:136945752|136946129:+	NCK1	NCK adaptor protein 1	protein coding gene	no	ENST00000488930.5	0.036	0.038	1.031	0.741(7097)	0.711(499)	0.567(9852)	non tumor-specific	alt_3prime;intron_retention	yes
LOXHD1_LS004	chr18:46483745|46485019:-	LOXHD1	lipoxygenase homology domains 1	protein coding gene	no	ENST00000398705.7;ENST00000579038.6;ENST00000300591.11;ENST00000582408.6;ENST00000536736.5;ENST00000398686.8;ENST00000642948.1;ENST00000441551.6	6.463	1.012	1.277	0.012(117)	0.023(16)	0.326(5663)	non tumor-specific	exon_skip	yes
EIF3L_LS012	chr22:37851490|37858679:+	EIF3L	eukaryotic translation initiation factor 3 subunit L	protein coding gene	no	ENST00000406934.5	1.627	1.393	5.854	0.903(8655)	0.957(672)	0.952(16539)	non tumor-specific	exon_skip	yes
GCGR_LS005	chr17:81810034|81810825:+	GCGR	glucagon receptor	protein coding gene	no	ENST00000574283.2	0.199	0.095	0.987	0.057(545)	0.182(128)	0.065(1137)	non tumor-specific	alt_5prime;intron_retention	yes
UN_SLC34A2_LS0040	chr4:25676667|25676885:-	SLC34A2	solute carrier family 34 member 2	protein coding gene	no	.	3.712	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEPT8_LS0002	chr5:132750997|132752866:+	SEPT8	septin 8	protein coding gene	no	.	3.372	0.120	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_DNAJC27_LS0006	chr2:24957974|24958543:-	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27	protein coding gene	no	.	0.898	0.476	0.000	0.017(160)	0.028(20)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
P3H4_LS002	chr17:41802979|41803287:-	P3H4	prolyl 3-hydroxylase family member 4 (inactive)	protein coding gene	no	ENST00000355468.7;ENST00000484247.1;ENST00000393928.5;ENST00000465097.1	39.944	14.902	18.420	0.98(9387)	0.972(682)	0.966(16790)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SQLE_LS012	chr8:125018201|125018631:+	SQLE	squalene epoxidase	protein coding gene	no	ENST00000523430.5;ENST00000265896.9;ENST00000518931.1;ENST00000518604.1	116.667	42.095	22.616	0.995(9533)	0.997(700)	0.968(16831)	non tumor-specific	exon_skip;intron_retention	yes
UN_TRRAP_LS0084	chr7:99012238|99012337:-	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	.	3.409	0.175	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
MXRA5Y_LS003	chrY:11979855|11985481:+	MXRA5Y	matrix remodeling associated 5 Y-linked (pseudogene)	pseudogene	no	ENST00000420610.1	1.533	0.000	0.695	0.006(60)	0(0)	0.011(189)	non tumor-specific	nAS	yes
UN_AC007368.1_LS0001	chr12:126191317|126219675:+	AC007368.1	-	lncRNA gene	no	.	0.963	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GPR173_UP_LS0003	chrX:52908515|52947295:+	GPR173	G protein-coupled receptor 173	protein coding gene	no	.	1.405	0.201	0.000	0.022(206)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_OS9_LS0102	chr12:57720922|57721097:-	OS9	OS9 endoplasmic reticulum lectin	protein coding gene	no	.	4.141	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF680_LS0037	chr7:64526517|64535819:-	ZNF680	zinc finger protein 680	protein coding gene	no	.	1.934	0.571	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TBC1D1_LS029	chr4:38090117|38095929:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	ENST00000508802.5;ENST00000261439.8;ENST00000615497.4;ENST00000510573.6	44.225	36.058	45.005	0.921(8823)	0.984(691)	0.979(17021)	non tumor-specific	exon_skip	yes
MAP3K4_LS011	chr6:161073612|161080881:+	MAP3K4	mitogen-activated protein kinase kinase kinase 4	protein coding gene	yes	ENST00000366919.6;ENST00000392142.8;ENST00000366920.6;ENST00000348824.11;ENST00000544041.5;ENST00000490904.6;ENST00000542851.5	5.352	4.675	9.738	0.92(8811)	0.963(676)	0.965(16778)	non tumor-specific	nAS	yes
FCHO1_LS009	chr19:17754361|17754592:+	FCHO1	FCH and mu domain containing endocytic adaptor 1	protein coding gene	no	ENST00000594202.5;ENST00000596309.5;ENST00000597474.5;ENST00000600201.5;ENST00000596536.5;ENST00000598086.5;ENST00000598932.5;ENST00000595023.5;ENST00000594068.5;ENST00000596865.5	0.909	0.631	2.893	0.312(2992)	0.157(110)	0.585(10160)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PRKAR1B_LS0015	chr7:550238|550341:-	PRKAR1B	protein kinase cAMP-dependent type I regulatory subunit beta	protein coding gene	no	.	2.855	0.526	0.000	0.008(72)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
YDJC_LS009	chr22:21629761|21629851:-	YDJC	YdjC chitooligosaccharide deacetylase homolog	protein coding gene	no	ENST00000464015.5;ENST00000292778.10;ENST00000415762.6;ENST00000473985.1;ENST00000482998.1;ENST00000398873.4	21.907	7.482	17.260	0.926(8871)	0.902(633)	0.977(16984)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NUFIP1_LS009	chr13:44982154|44989025:-	NUFIP1	nuclear FMR1 interacting protein 1	protein coding gene	no	ENST00000379161.4	12.727	6.357	4.782	0.955(9154)	0.989(694)	0.941(16353)	non tumor-specific	nAS	yes
UN_HOOK3_LS0051	chr8:43020399|43020687:-	HOOK3	hook microtubule tethering protein 3	protein coding gene	no	.	1.469	0.468	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADCY10P1_LS017	chr6:41120739|41122977:+	ADCY10P1	ADCY10 pseudogene 1	pseudogene	no	ENST00000457653.8	1.031	0.000	0.701	0(4)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_ZNF654_UP_LS0005	chr3:87982691|87990708:+	ZNF654	zinc finger protein 654	protein coding gene	no	.	3.707	0.091	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	nAS	no
CMYA5_LS022	chr5:79793610|79799370:+	CMYA5	cardiomyopathy associated 5	protein coding gene	no	ENST00000446378.2;ENST00000506603.5	8.420	8.541	12.400	0.527(5050)	0.675(474)	0.94(16333)	non tumor-specific	exon_skip	yes
UN_AC100849.1_LS0007	chr8:19139894|19141435:-	AC100849.1	-	lncRNA gene	no	.	3.572	0.175	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRPL47_LS001	chr3:179588995|179592644:-	MRPL47	mitochondrial ribosomal protein L47	protein coding gene	no	ENST00000476781.5;ENST00000259038.6;ENST00000392659.2	65.403	32.407	65.573	0.919(8809)	0.91(639)	0.979(17020)	non tumor-specific	exon_skip	yes
GHDC_LS003	chr17:42190270|42190624:-	GHDC	GH3 domain containing	protein coding gene	no	ENST00000593209.5;ENST00000301671.12;ENST00000587427.5	74.238	49.320	27.047	0.995(9529)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
NRCAM_LS034	chr7:108189746|108191254:-	NRCAM	neuronal cell adhesion molecule	protein coding gene	yes	ENST00000379028.7;ENST00000413765.6;ENST00000379024.8;ENST00000379022.8;ENST00000425651.6	3.339	7.484	6.356	0.111(1065)	0.028(20)	0.207(3596)	non tumor-specific	exon_skip	yes
ZC3H12D_LS001	chr6:149448045|149448434:-	ZC3H12D	zinc finger CCCH-type containing 12D	protein coding gene	no	ENST00000498662.1	0.499	0.151	0.493	0.01(92)	0.017(12)	0(6)	non tumor-specific	nAS	yes
RIN2_LS001	chr20:19757939|19799622:+	RIN2	Ras and Rab interactor 2	protein coding gene	no	ENST00000432334.2;ENST00000648165.1;ENST00000616029.2	0.351	0.362	1.982	0.62(5941)	0.798(560)	0.737(12819)	non tumor-specific	nAS	yes
UN_ZMYM1_LS0020	chr1:35094083|35097317:+	ZMYM1	zinc finger MYM-type containing 1	protein coding gene	no	.	1.172	0.483	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC025419.1_LS016	chr12:65570068|65587343:-	AC025419.1	-	lncRNA gene	no	ENST00000546198.5	0.791	0.000	0.568	0.015(139)	0(0)	0.008(138)	non tumor-specific	nAS	yes
UN_IGHG4_UP_LS0101	chr14:105643525|105668343:-	IGHG4	immunoglobulin heavy constant gamma 4 (G4m marker)	no	no	.	128.953	41.430	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
LINC01362_LS003	chr1:83076224|83086212:+	LINC01362	long intergenic non-protein coding RNA 1362	lncRNA gene	no	ENST00000452901.5	2.265	0.000	0.733	0(1)	0(0)	0.004(78)	non tumor-specific	nAS	yes
UN_FAM99B_LS0001	chr11:1684034|1685438:-	FAM99B	family with sequence similarity 99 member B	lncRNA gene	no	.	2.096	1.060	0.000	0.002(17)	0.01(7)	0(0)	non tumor-specific	nAS	no
MROH5_LS001	chr8:141434058|141434551:-	MROH5	maestro heat like repeat family member 5 (gene/pseudogene)	pseudogene	no	ENST00000523857.5;ENST00000521053.5;ENST00000621837.1;ENST00000430863.5	4.132	0.000	0.689	0.002(20)	0(0)	0.016(283)	non tumor-specific	nAS	yes
DHPS_LS021	chr19:12677396|12679457:-	DHPS	deoxyhypusine synthase	protein coding gene	no	ENST00000598246.5;ENST00000210060.11;ENST00000600864.5;ENST00000351660.9;ENST00000601639.5;ENST00000594424.5;ENST00000601537.5;ENST00000614126.4;ENST00000595844.5;ENST00000596847.5;ENST00000595912.5;ENST00000597152.5;ENST00000598850.5;ENST00000596162.1	35.381	24.923	134.664	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PIGQ_LS018	chr16:576254|578379:+	PIGQ	phosphatidylinositol glycan anchor biosynthesis class Q	protein coding gene	no	ENST00000409527.6;ENST00000321878.9;ENST00000636657.1;ENST00000026218.9;ENST00000443147.5;ENST00000635909.1;ENST00000636005.1;ENST00000637468.1;ENST00000638143.1;ENST00000409527.6;ENST00000321878.9;ENST00000636657.1;ENST00000026218.9;ENST00000443147.5;ENST00000635909.1;ENST00000636005.1;ENST00000637468.1;ENST00000638143.1	36.626	27.358	27.618	0.983(9415)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPARGC1A_LS0023	chr4:23831751|23884311:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	.	1.612	0.875	0.000	0.003(26)	0.033(23)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_PEX26_LS0039	chr22:18085258|18100707:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	1.582	0.222	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DTX2_LS014	chr7:76463709|76477114:+	DTX2	deltex E3 ubiquitin ligase 2	protein coding gene	no	ENST00000425780.5;ENST00000457529.5;ENST00000423646.5;ENST00000425780.5;ENST00000457529.5;ENST00000423646.5	0.247	0.194	1.088	0.736(7054)	0.711(499)	0.518(9008)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SYT17_LS0029	chr16:19194877|19223045:+	SYT17	synaptotagmin 17	protein coding gene	no	.	2.236	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SEC14L1_LS150	chr17:77215792|77215985:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	3.459	1.442	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_MLPH_LS0079	chr2:237545645|237546606:+	MLPH	melanophilin	protein coding gene	no	.	5.262	1.880	0.000	0.01(96)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_ZMYND11_LS0017	chr10:249084|252348:+	ZMYND11	zinc finger MYND-type containing 11	protein coding gene	yes	.	8.639	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
TRPA1_LS019	chr8:72055600|72055686:-	TRPA1	transient receptor potential cation channel subfamily A member 1	protein coding gene	no	ENST00000523582.5;ENST00000262209.4	3.859	1.510	1.533	0.139(1330)	0.13(91)	0.129(2250)	non tumor-specific	intron_retention	yes
UN_AL132800.1_UP_LS0001	chr14:24423476|24430714:+	AL132800.1	-	lncRNA gene	no	.	2.504	5.325	0.000	0.018(168)	0.093(65)	0(0)	non tumor-specific	nAS	no
GSK3A_LS007	chr19:42233205|42233286:-	GSK3A	glycogen synthase kinase 3 alpha	protein coding gene	yes	ENST00000222330.7;ENST00000398249.8;ENST00000453535.1	219.744	134.653	115.769	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_OBSCN_LS0166	chr1:228365779|228366685:-	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	6.181	0.451	0.000	0.03(283)	0.011(8)	0(0)	non tumor-specific	nAS	no
AL356364.1_LS001	chr1:219557235|219557564:+	AL356364.1	-	lncRNA gene	no	ENST00000458443.1	0.330	0.074	0.765	0.044(419)	0.063(44)	0.054(941)	non tumor-specific	nAS	yes
HDAC3_LS022	chr5:141629306|141629860:-	HDAC3	histone deacetylase 3	protein coding gene	yes	ENST00000495485.1;ENST00000495485.1;ENST00000495485.1	0.537	0.473	0.720	0.566(5427)	0.594(417)	0.128(2226)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZNF83_LS014	chr19:52616841|52618936:-	ZNF83	zinc finger protein 83	protein coding gene	no	ENST00000597161.5;ENST00000597161.5	1.022	0.862	1.077	0.614(5880)	0.745(523)	0.563(9779)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GFAP_LS0201	chr17:44915382|44915449:+	GFAP	glial fibrillary acidic protein	protein coding gene	no	.	58.174	48.264	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FBXL7_LS0047	chr5:15884169|15893819:-	FBXL7	F-box and leucine rich repeat protein 7	protein coding gene	no	.	1.867	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NECTIN2_LS0012	chr19:44846588|44865348:-	NECTIN2	nectin cell adhesion molecule 2	protein coding gene	no	.	1.569	0.282	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SERF2_LS0037	chr15:43793809|43793876:-	SERF2	small EDRK-rich factor 2	protein coding gene	no	.	24.063	3.037	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TKFC_LS0050	chr11:61350191|61350231:+	TKFC	triokinase and FMN cyclase	protein coding gene	no	.	3.788	1.264	0.000	0.014(136)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_OGFR_LS0057	chr20:62813260|62813321:-	OGFR	opioid growth factor receptor	protein coding gene	no	.	26.868	7.868	0.000	0.104(996)	0.053(37)	0(0)	non tumor-specific	nAS	no
HLA-C_LS010	chr6:31269525|31269966:-	HLA-C	major histocompatibility complex, class I, C	protein coding gene	no	ENST00000487245.5;ENST00000376228.9;ENST00000376237.8;ENST00000640219.1;ENST00000487245.5;ENST00000376228.9;ENST00000376237.8;ENST00000640219.1	983.856	553.604	1280.378	0.996(9546)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_TANC1_LS0046	chr2:159150556|159169250:+	TANC1	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein coding gene	no	.	4.622	2.293	0.000	0.042(403)	0.034(24)	0(0)	non tumor-specific	exon_skip	no
HAP1_LS005	chr17:41725897|41727053:-	HAP1	huntingtin-associated protein 1, pseudogene	protein coding gene	no	ENST00000393939.6;ENST00000347901.8;ENST00000341193.9;ENST00000310778.5	5.438	1.878	3.060	0.237(2273)	0.231(162)	0.578(10053)	non tumor-specific	nAS	yes
AC092683.1_LS004	chr2:97422497|97422580:-	AC092683.1	-	lncRNA gene	no	ENST00000618277.4;ENST00000612970.4	0.199	0.050	0.706	0.138(1326)	0.058(41)	0.023(403)	non tumor-specific	nAS	yes
POLD1_LS023	chr19:50407174|50407327:+	POLD1	DNA polymerase delta 1, catalytic subunit	protein coding gene	no	ENST00000600859.5;ENST00000440232.6;ENST00000613923.5;ENST00000643407.1;ENST00000595904.6;ENST00000599857.6;ENST00000644560.1;ENST00000596425.1	28.798	7.855	13.710	0.984(9429)	0.986(692)	0.977(16990)	non tumor-specific	exon_skip	yes
DNAJC5G_LS013	chr2:27280233|27280429:+	DNAJC5G	DnaJ heat shock protein family (Hsp40) member C5 gamma	protein coding gene	no	ENST00000296097.7;ENST00000402462.5;ENST00000404433.5;ENST00000406962.1;ENST00000460358.1	0.512	0.066	1.221	0.029(277)	0.011(8)	0.248(4316)	non tumor-specific	exon_skip	yes
LUC7L2_LS001	chr7:139340517|139371387:+	LUC7L2	LUC7 like 2, pre-mRNA splicing factor	protein coding gene	no	ENST00000541170.7	0.047	0.051	0.711	0.127(1213)	0.138(97)	0.014(235)	non tumor-specific	nAS	yes
EIF3E_LS030	chr8:108242256|108248613:-	EIF3E	eukaryotic translation initiation factor 3 subunit E	protein coding gene	yes	ENST00000522887.1	0.010	0.030	0.657	0.13(1243)	0.114(80)	0.042(737)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
NBPF19_LS033	chr1:149500006|149500666:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000426482.3	0.265	0.035	0.622	0.065(626)	0.115(81)	0.016(277)	non tumor-specific	nAS	yes
UN_CDT1_LS0008	chr16:88806405|88806486:+	CDT1	chromatin licensing and DNA replication factor 1	protein coding gene	no	.	10.936	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
WIPF2_LS012	chr17:40260667|40262525:+	WIPF2	WAS/WASL interacting protein family member 2	protein coding gene	no	ENST00000494757.5;ENST00000323571.8;ENST00000585043.5;ENST00000583130.5;ENST00000584296.1	19.520	14.565	13.245	0.965(9243)	0.984(691)	0.978(16991)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC37A1_LS0064	chr21:42570091|42570143:-	SLC37A1	solute carrier family 37 member 1	protein coding gene	no	.	2.280	0.629	0.000	0.013(125)	0.021(15)	0(0)	non tumor-specific	nAS	no
C10orf88_LS008	chr10:122953032|122954015:-	C10orf88	chromosome 10 open reading frame 88	protein coding gene	no	ENST00000481909.1	5.106	3.207	4.006	0.922(8837)	0.953(669)	0.927(16121)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_BPIFA2_LS0006	chr20:33173140|33174079:+	BPIFA2	BPI fold containing family A member 2	protein coding gene	no	.	0.997	0.071	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_DBI_LS0004	chr2:119370785|119372264:-	DBI	translocator protein	protein coding gene	no	.	6.148	0.361	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
EFCAB5_LS033	chr17:30090674|30091871:+	EFCAB5	EF-hand calcium binding domain 5	protein coding gene	no	ENST00000394835.7;ENST00000419434.5	0.360	0.000	0.799	0(4)	0(0)	0.054(930)	non tumor-specific	exon_skip	yes
BDNF_LS012	chr11:27658585|27720346:-	BDNF	brain derived neurotrophic factor	protein coding gene	no	ENST00000395981.7	0.203	0.094	2.340	0.033(319)	0.016(11)	0.07(1209)	non tumor-specific	alt_5prime	yes
UN_SLC38A6_LS0015	chr14:61046167|61051787:+	SLC38A6	solute carrier family 38 member 6	protein coding gene	no	.	4.475	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
AL356599.1_LS001	chr6:145799498|145809778:+	AL356599.1	-	lncRNA gene	no	ENST00000629681.1	0.115	0.035	0.609	0.004(34)	0.01(7)	0.003(59)	non tumor-specific	nAS	yes
RBP7_LS006	chr1:9997331|10004093:+	RBP7	retinol binding protein 7	protein coding gene	no	ENST00000315901.4	0.056	0.109	0.822	0.061(580)	0.14(98)	0.186(3236)	non tumor-specific	exon_skip;mutex_exons	yes
ATXN2-AS_LS001	chr12:111599553|111599828:+	ATXN2-AS	ATXN2 antisense RNA	lncRNA gene	no	ENST00000547021.1	0.293	0.175	0.720	0.314(3007)	0.261(183)	0.2(3473)	non tumor-specific	nAS	yes
ATF6B_LS021	chr6:32127750|32128126:-	ATF6B	activating transcription factor 6 beta	protein coding gene	no	ENST00000375201.8	6.085	6.075	7.573	0.942(9028)	0.959(673)	0.968(16825)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_POLQ_LS0033	chr3:121493816|121496808:-	POLQ	DNA polymerase theta	protein coding gene	no	.	1.511	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SFMBT1_LS015	chr3:52931035|52932062:-	SFMBT1	Scm like with four mbt domains 1	protein coding gene	no	ENST00000394752.7	9.167	5.865	4.568	0.857(8209)	0.944(663)	0.941(16349)	non tumor-specific	alt_3prime;exon_skip	yes
TNC_LS015	chr9:115042341|115059730:-	TNC	tenascin C	protein coding gene	no	ENST00000423613.6	1.785	0.819	1.000	0.044(417)	0.05(35)	0.26(4519)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RBM6_LS0077	chr3:50068357|50068690:+	RBM6	RNA binding motif protein 6	protein coding gene	yes	.	3.009	0.921	0.000	0.028(269)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DCUN1D4_LS039	chr4:51913392|51913529:+	DCUN1D4	defective in cullin neddylation 1 domain containing 4	protein coding gene	no	ENST00000509376.5;ENST00000334635.9;ENST00000381441.7;ENST00000507741.5;ENST00000477560.5;ENST00000451288.6;ENST00000507659.5;ENST00000505634.5;ENST00000510808.1;ENST00000512199.5;ENST00000508257.5	22.148	17.578	42.085	0.949(9097)	0.962(675)	0.976(16969)	non tumor-specific	nAS	yes
UN_AC253536.1_UP_LS0002	chr22:24003847|24006971:-	AC253536.1	-	pseudogene	no	.	1.185	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF500_LS010	chr16:4766076|4767017:-	ZNF500	zinc finger protein 500	protein coding gene	no	ENST00000219478.10;ENST00000545009.1	4.647	2.864	6.939	0.913(8752)	0.946(664)	0.965(16773)	non tumor-specific	alt_3prime	yes
UBR4_LS097	chr1:19161736|19161827:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7;ENST00000417040.1;ENST00000419533.1	18.005	13.476	15.413	0.807(7729)	0.916(643)	0.966(16795)	non tumor-specific	nAS	yes
UN_AC087269.1_LS0011	chr8:8779914|8782004:-	AC087269.1	-	lncRNA gene	no	.	2.805	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC126696.2_UP_LS0001	chr16:87766341|87774189:+	AC126696.2	-	lncRNA gene	no	.	2.777	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF219_LS0090	chr14:21097412|21098312:-	ZNF219	zinc finger protein 219	protein coding gene	no	.	0.660	0.094	0.000	0.009(91)	0.017(12)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GPATCH2L_UP_LS0008	chr14:76129715|76150916:+	GPATCH2L	G-patch domain containing 2 like	protein coding gene	no	.	1.436	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PISD_LS010	chr22:31621822|31648101:-	PISD	SFI1 centrin binding protein	protein coding gene	no	.;.	5.286	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPL23A_LS0041	chr17:28722891|28723573:-	RPL23A	ribosomal protein L23a	protein coding gene	no	.	0.863	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
FBXO3_LS007	chr11:33751607|33753111:-	FBXO3	F-box protein 3	protein coding gene	no	ENST00000530013.5;ENST00000531080.5	0.048	0.410	0.905	0.405(3879)	0.516(362)	0.168(2915)	non tumor-specific	alt_5prime;exon_skip	yes
CABLES1_LS005	chr18:23149975|23188838:+	CABLES1	Cdk5 and Abl enzyme substrate 1	protein coding gene	yes	ENST00000585061.1	0.044	0.022	0.985	0.22(2108)	0.323(227)	0.037(639)	non tumor-specific	nAS	yes
UN_GSDMC_LS0001	chr8:129748740|129749399:-	GSDMC	gasdermin C	protein coding gene	no	.	4.504	0.808	0.000	0.025(239)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
C3_LS003	chr19:6678287|6678372:-	C3	complement C3	protein coding gene	no	ENST00000245907.10;ENST00000599899.5;ENST00000602229.1;ENST00000599668.1	1839.452	2367.242	534.081	0.987(9458)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
STXBP5_LS016	chr6:147315735|147316229:+	STXBP5	syntaxin binding protein 5	protein coding gene	no	ENST00000367481.7;ENST00000321680.10;ENST00000367480.7	9.182	7.339	6.476	0.787(7537)	0.879(617)	0.955(16599)	non tumor-specific	nAS	yes
CPNE1_LS032	chr20:35632923|35653528:-	CPNE1	copine 1	protein coding gene	no	ENST00000317677.9	6.524	5.578	8.730	0.253(2421)	0.309(217)	0.964(16755)	non tumor-specific	nAS	yes
FOCAD_LS015	chr9:20765073|20770032:+	FOCAD	focadhesin	protein coding gene	no	ENST00000380249.5;ENST00000338382.10;ENST00000605031.5;ENST00000604103.1	7.578	6.194	6.840	0.817(7824)	0.903(634)	0.945(16431)	non tumor-specific	exon_skip	yes
UN_ZNF358_LS0014	chr19:7518186|7519205:+	ZNF358	zinc finger protein 358	protein coding gene	no	.	1.914	0.404	0.000	0.022(211)	0.007(5)	0(0)	non tumor-specific	nAS	no
PKD1P5_LS019	chr16:18384593|18384813:-	PKD1P5	polycystin 1, transient receptor potential channel interacting pseudogene 5	pseudogene	no	ENST00000532415.5;ENST00000538166.1	0.624	0.600	6.416	0.839(8036)	0.859(603)	0.429(7461)	non tumor-specific	nAS	yes
POLN_LS038	chr4:2241790|2242051:-	POLN	DNA polymerase nu	protein coding gene	no	ENST00000511885.6	0.398	0.195	1.069	0.564(5405)	0.531(373)	0.587(10210)	non tumor-specific	alt_3prime;intron_retention	yes
UN_MIR6724-4_UP_LS0306	chr21:8259640|8398310:+	MIR6724-4	microRNA 6724-4	small non-coding RNA gene	no	.	204.943	18.185	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
PDLIM5_LS033	chr4:94656911|94657427:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	ENST00000506632.2	0.907	0.752	0.991	0.138(1322)	0.127(89)	0.406(7054)	non tumor-specific	alt_5prime;exon_skip	yes
CSN1S2AP_LS003	chr4:70070455|70071230:+	CSN1S2AP	casein alpha s2 like A, pseudogene	pseudogene	no	ENST00000451783.5;ENST00000503813.5	1.430	0.096	0.950	0(4)	0.011(8)	0.002(32)	non tumor-specific	nAS	yes
BTBD11_LS017	chr12:107635390|107640311:+	BTBD11	BTB domain containing 11	protein coding gene	no	ENST00000280758.9;ENST00000420571.6;ENST00000490090.6;ENST00000357167.8;ENST00000494235.2	7.532	8.593	2.857	0.531(5089)	0.591(415)	0.557(9679)	non tumor-specific	nAS	yes
UN_NELFA_LS0051	chr4:2011364|2017670:-	NELFA	negative elongation factor complex member A	protein coding gene	no	.	2.513	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
EVL_LS013	chr14:100097658|100126707:+	EVL	Enah/Vasp-like	protein coding gene	no	ENST00000554045.5	0.687	1.724	0.730	0.203(1948)	0.285(200)	0.184(3199)	non tumor-specific	exon_skip	yes
UN_AC092666.2_UP_LS0042	chr7:150237608|150248948:-	AC092666.2	-	pseudogene	no	.	2.166	0.501	0.000	0.032(311)	0.031(22)	0(0)	non tumor-specific	nAS	no
LIX1_LS007	chr5:97137192|97142495:-	LIX1	limb and CNS expressed 1	protein coding gene	no	ENST00000512378.1	0.002	0.000	0.782	0.002(15)	0.006(4)	0.001(13)	non tumor-specific	nAS	yes
UN_CASC4_LS0033	chr15:44380976|44398327:+	CASC4	golgi membrane protein 2	protein coding gene	no	.	0.824	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RPL19_LS0001	chr17:39200349|39201229:+	RPL19	ribosomal protein L19	protein coding gene	no	.	244.255	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PLCE1_LS022	chr10:94284965|94293508:+	PLCE1	phospholipase C epsilon 1	protein coding gene	yes	ENST00000371380.7;ENST00000371385.7;ENST00000371375.1	7.980	11.565	11.120	0.72(6903)	0.849(596)	0.906(15744)	non tumor-specific	exon_skip	yes
SLC29A1_LS039	chr6:44230665|44230811:+	SLC29A1	solute carrier family 29 member 1 (Augustine blood group)	protein coding gene	no	ENST00000427851.7;ENST00000393844.5;ENST00000371713.6;ENST00000371755.8;ENST00000472176.2;ENST00000371724.6;ENST00000371708.1;ENST00000646251.1	62.825	43.530	124.484	0.995(9529)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
KMT2A_LS012	chr11:118474315|118476805:+	KMT2A	lysine methyltransferase 2A	protein coding gene	yes	ENST00000534358.6;ENST00000389506.10;ENST00000531904.6;ENST00000649699.1;ENST00000533790.2	6.840	3.763	5.287	0.655(6275)	0.812(570)	0.933(16219)	non tumor-specific	nAS	yes
UN_ERI2_LS0016	chr16:20796489|20796890:+	ERI2	ERI1 exoribonuclease family member 2	protein coding gene	no	.	5.220	2.232	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NBEAL2_LS0055	chr3:47001179|47001388:+	NBEAL2	neurobeachin like 2	protein coding gene	no	.	2.508	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CEMIP2_LS009	chr9:71704803|71709259:-	CEMIP2	cell migration inducing hyaluronidase 2	protein coding gene	no	ENST00000377044.8;ENST00000377066.9;ENST00000542935.5;ENST00000377055.1;ENST00000377043.2;ENST00000537329.1	38.974	31.758	15.465	0.97(9293)	0.993(697)	0.976(16969)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CENPU_LS0008	chr4:184699602|184700820:-	CENPU	centromere protein U	protein coding gene	no	.	5.026	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PTPN3_LS001	chr9:109375614|109378543:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	ENST00000447271.1	0.274	0.097	0.695	0.062(596)	0.097(68)	0.056(977)	non tumor-specific	nAS	yes
TEX14_LS021	chr17:58586082|58587581:-	TEX14	testis expressed 14, intercellular bridge forming factor	protein coding gene	no	ENST00000389934.7;ENST00000240361.12;ENST00000349033.9;ENST00000582740.1	3.058	0.267	0.888	0.025(241)	0.006(4)	0.351(6097)	non tumor-specific	nAS	yes
DES_LS010	chr2:219423820|219425663:+	DES	desmin	protein coding gene	no	ENST00000373960.3	124.206	2166.720	196.328	0.692(6633)	0.94(660)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL662884.1_UP_LS0001	chr6:32189738|32190466:-	AL662884.1	-	no	no	.	3.203	0.312	0.000	0.007(71)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_PKMYT1_LS0003	chr16:2974157|2974550:-	PKMYT1	protein kinase, membrane associated tyrosine/threonine 1	protein coding gene	no	.	10.162	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
TLE1_LS005	chr9:81587828|81590805:-	TLE1	TLE family member 1, transcriptional corepressor	protein coding gene	yes	ENST00000376499.7	59.698	34.292	44.892	0.986(9447)	0.996(699)	0.977(16984)	non tumor-specific	nAS	yes
UN_SOCS3_LS0046	chr17:78357611|78358014:+	SOCS3	suppressor of cytokine signaling 3	protein coding gene	yes	.	2.410	0.447	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZC3HAV1_LS0009	chr7:139053577|139053965:-	ZC3HAV1	zinc finger CCCH-type containing, antiviral 1	protein coding gene	no	.	3.174	0.579	0.000	0.007(64)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
USP33_LS028	chr1:77741748|77745421:-	USP33	ubiquitin specific peptidase 33	protein coding gene	yes	ENST00000357428.5;ENST00000370793.5;ENST00000370792.7;ENST00000524536.5;ENST00000530709.5	5.001	4.043	4.470	0.884(8466)	0.939(659)	0.928(16122)	non tumor-specific	exon_skip	yes
SAMHD1_LS006	chr20:36897959|36904157:-	SAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein coding gene	no	ENST00000262878.5;ENST00000647459.1;ENST00000465985.2	0.359	0.220	2.458	0.765(7330)	0.775(544)	0.819(14229)	non tumor-specific	exon_skip	yes
KMT2A_LS043	chr11:118510118|118511951:+	KMT2A	lysine methyltransferase 2A	protein coding gene	yes	ENST00000534358.6;ENST00000389506.10;ENST00000649699.1;ENST00000649878.1;ENST00000648565.1;ENST00000534678.3;ENST00000527839.2	19.492	13.175	19.669	0.949(9090)	0.963(676)	0.975(16944)	non tumor-specific	intron_retention	yes
UN_GUSBP9_UP_LS0004	chr5:71259345|71260811:-	GUSBP9	GUSB pseudogene 9	pseudogene	no	.	2.456	0.843	0.000	0.179(1719)	0.228(160)	0(0)	non tumor-specific	nAS	no
RFTN1_LS004	chr3:16323457|16326773:-	RFTN1	raftlin, lipid raft linker 1	protein coding gene	no	ENST00000607320.5;ENST00000432519.5;ENST00000334133.8;ENST00000483671.1	74.181	53.124	44.635	0.985(9433)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
USP3-AS1_LS013	chr15:63594786|63600262:-	USP3-AS1	USP3 antisense RNA 1	lncRNA gene	no	ENST00000560962.5	0.057	0.080	0.754	0.146(1395)	0.191(134)	0.061(1063)	non tumor-specific	nAS	yes
LINC00664_LS014	chr19:21494331|21495094:+	LINC00664	long intergenic non-protein coding RNA 664	lncRNA gene	no	ENST00000596718.5;ENST00000599078.1	2.120	0.000	0.683	0.005(48)	0(0)	0.032(561)	non tumor-specific	nAS	yes
SULT1A3_LS002	chr16:30199903|30200725:+	SULT1A3	sulfotransferase family 1A member 3	protein coding gene	no	ENST00000395138.6	0.510	0.161	0.729	0.189(1808)	0.238(167)	0.218(3791)	non tumor-specific	intron_retention	yes
UN_RPL10P16_LS0029	chr19:12643556|12643612:-	RPL10P16	ribosomal protein L10 pseudogene 16	pseudogene	no	.	2.431	7.947	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF418_LS001	chr19:57922629|57923192:-	ZNF418	zinc finger protein 418	protein coding gene	no	ENST00000595830.5;ENST00000396147.5;ENST00000425570.7;ENST00000600989.5	2.669	1.100	6.031	0.527(5049)	0.67(470)	0.946(16447)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC011632.1_LS0012	chr8:74823467|74825210:+	AC011632.1	-	lncRNA gene	no	.	1.479	0.196	0.000	0.018(174)	0.006(4)	0(0)	non tumor-specific	nAS	no
ERCC3_LS027	chr2:127293718|127293795:-	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit	protein coding gene	no	ENST00000445889.5	0.006	0.009	0.667	0.158(1518)	0.152(107)	0.055(959)	non tumor-specific	alt_5prime	yes
UN_UGGT2_LS0037	chr13:95925732|95927028:-	UGGT2	UDP-glucose glycoprotein glucosyltransferase 2	protein coding gene	no	.	1.178	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SESN2_LS009	chr1:28279241|28280716:+	SESN2	sestrin 2	protein coding gene	no	ENST00000253063.3	21.529	17.312	11.714	0.982(9405)	0.989(694)	0.977(16974)	non tumor-specific	nAS	yes
MARCH3_LS001	chr5:126870791|126878185:-	MARCH3	membrane associated ring-CH-type finger 3	protein coding gene	no	ENST00000308660.5;ENST00000506088.1	6.138	4.871	9.560	0.936(8965)	0.937(658)	0.969(16842)	non tumor-specific	exon_skip	yes
UN_BCAM_LS0207	chr19:44820487|44820598:-	BCAM	branched chain amino acid transaminase 2	protein coding gene	no	.	3.613	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HEATR5A_LS0019	chr14:31302366|31304905:-	HEATR5A	HEAT repeat containing 5A	protein coding gene	no	.	4.727	0.260	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CACNA1D_LS068	chr3:53800859|53801212:+	CACNA1D	calcium voltage-gated channel subunit alpha1 D	protein coding gene	no	ENST00000636633.1	1.796	0.000	0.876	0.001(6)	0(0)	0.104(1809)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TRIM37_LS0023	chr17:59070947|59075630:-	TRIM37	tripartite motif containing 37	protein coding gene	no	.	2.103	0.187	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
LINC00856_LS017	chr10:78270109|78277917:+	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	ENST00000415959.1	0.098	0.178	0.718	0.011(107)	0.019(13)	0.01(181)	non tumor-specific	nAS	yes
UN_BAIAP2L2_LS0059	chr22:38098482|38098985:-	BAIAP2L2	BAR/IMD domain containing adaptor protein 2 like 2	protein coding gene	no	.	4.330	0.881	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
DNAJC18_LS006	chr5:139420225|139422708:-	DNAJC18	DnaJ heat shock protein family (Hsp40) member C18	protein coding gene	no	ENST00000302060.9;ENST00000508445.5;ENST00000514052.1	10.414	7.064	17.211	0.919(8807)	0.927(651)	0.97(16860)	non tumor-specific	exon_skip	yes
KRT37_LS003	chr17:41422194|41422273:-	KRT37	keratin 37	protein coding gene	no	ENST00000225550.3	6.036	0.207	0.761	0.022(206)	0.003(2)	0.019(336)	non tumor-specific	nAS	yes
UN_TIMMDC1_LS0016	chr3:119513719|119515860:+	TIMMDC1	translocase of inner mitochondrial membrane domain containing 1	protein coding gene	no	.	1.791	0.128	0.000	0.014(132)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TEKT2_LS007	chr1:36086847|36086931:+	TEKT2	tektin 2	protein coding gene	no	ENST00000207457.7;ENST00000469024.1	6.248	3.593	2.101	0.388(3720)	0.531(373)	0.602(10457)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EXOG_UP_LS0001	chr3:38400985|38477287:+	EXOG	exo/endonuclease G	protein coding gene	no	.	0.735	0.107	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CSNK1G3_LS0005	chr5:123512570|123557495:+	CSNK1G3	casein kinase 1 gamma 3	protein coding gene	no	.	1.111	0.166	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CLK2_LS005	chr1:155264040|155264221:-	CLK2	CDC like kinase 2	protein coding gene	no	ENST00000361168.9;ENST00000368361.8;ENST00000476983.5;ENST00000355560.4	99.444	40.015	107.797	0.998(9564)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ATP5ME_LS0006	chr4:673413|673912:+	ATP5ME	ATP synthase membrane subunit e	protein coding gene	no	.	0.663	0.152	0.000	0.005(49)	0.009(6)	0(0)	non tumor-specific	nAS	no
AL138828.1_LS029	chr6:136162348|136166320:-	AL138828.1	-	lncRNA gene	no	ENST00000626605.1	0.012	0.000	0.705	0(1)	0(0)	0.002(28)	non tumor-specific	nAS	yes
UN_VPS9D1_LS0076	chr16:89717164|89717196:+	VPS9D1	VPS9 domain containing 1	protein coding gene	no	.	7.587	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP003059.2_UP_LS0002	chr11:86672451|86727340:+	AP003059.2	-	lncRNA gene	no	.	0.692	0.313	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
SORCS2_LS018	chr4:7715311|7718012:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	ENST00000507866.6;ENST00000329016.10	10.468	7.451	3.303	0.477(4569)	0.789(554)	0.815(14174)	non tumor-specific	exon_skip	yes
UN_RRBP1_LS0090	chr20:17635664|17636598:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	40.907	7.738	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CMTM1_LS003	chr16:66566594|66577104:+	CMTM1	CKLF like MARVEL transmembrane domain containing 1	protein coding gene	no	ENST00000336328.10;ENST00000531885.5	0.066	0.050	0.711	0.116(1107)	0.043(30)	0.001(16)	non tumor-specific	nAS	yes
TRIM51HP_LS004	chr11:55295690|55297479:-	TRIM51HP	tripartite motif-containing 51H, pseudogene	pseudogene	no	ENST00000530412.1;ENST00000526016.1	0.836	0.016	0.632	0.018(177)	0.001(1)	0.001(24)	non tumor-specific	nAS	yes
UN_AP002884.1_LS0028	chr11:112290670|112291320:+	AP002884.1	-	lncRNA gene	no	.	3.116	0.313	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
MFAP3L_LS015	chr4:170006010|170006603:-	MFAP3L	microfibril associated protein 3 like	protein coding gene	no	ENST00000393702.7;ENST00000504999.1;ENST00000510306.1	1.625	1.596	1.894	0.706(6762)	0.813(571)	0.697(12110)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HOXB7_LS0057	chr17:48623135|48625739:-	HOXB7	homeobox B7	protein coding gene	no	.	3.187	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZFYVE1_LS003	chr14:72974193|72974779:-	ZFYVE1	zinc finger FYVE-type containing 1	protein coding gene	no	ENST00000553891.5;ENST00000318876.9;ENST00000556143.5;ENST00000394207.6;ENST00000555072.1;ENST00000556040.1;ENST00000556761.1	38.449	24.353	30.390	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
UN_ERVK3-1_LS0022	chr19:58312403|58314748:+	ERVK3-1	endogenous retrovirus group K3 member 1	protein coding gene	no	.	7.335	0.432	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
LCN15_LS001	chr9:136759714|136763744:-	LCN15	lipocalin 15	protein coding gene	no	ENST00000495223.1	0.367	0.082	0.605	0.011(102)	0.001(1)	0(8)	non tumor-specific	nAS	yes
APIP_LS007	chr11:34888869|34890504:-	APIP	APAF1 interacting protein	protein coding gene	no	ENST00000532428.6;ENST00000395787.3;ENST00000527830.1	69.661	52.621	49.964	0.994(9523)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip;mutex_exons	yes
UN_C3orf86_UP_LS0003	chr3:44458364|44502542:-	C3orf86	chromosome 3 open reading frame 86	pseudogene	no	.	0.456	0.141	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WDR33_LS0037	chr2:127719509|127719666:+	WDR33	WD repeat domain 33	protein coding gene	no	.	2.408	0.000	0.000	0.005(49)	0(0)	0(0)	non tumor-specific	nAS	no
INTU_LS025	chr4:127708668|127713936:+	INTU	inturned planar cell polarity protein	protein coding gene	no	ENST00000510766.1	0.408	0.171	0.692	0.109(1041)	0.103(72)	0.058(1004)	non tumor-specific	exon_skip	yes
UN_ATXN2_LS0002	chr12:111444858|111446660:+	ATXN2	ataxin 2	protein coding gene	no	.	0.459	0.120	0.000	0.004(38)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CACNA2D3_LS0028	chr3:54634565|54639605:-	CACNA2D3	calcium voltage-gated channel auxiliary subunit alpha2delta 3	protein coding gene	yes	.	5.346	0.499	0.000	0.018(169)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARHGEF3_LS029	chr3:57035173|57079226:-	ARHGEF3	Rho guanine nucleotide exchange factor 3	protein coding gene	no	.;.	0.647	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP000688.1_UP_LS0003	chr21:36130376|36130445:-	AP000688.1	-	lncRNA gene	no	.	0.748	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC25_LS011	chr8:27762458|27764286:-	CCDC25	coiled-coil domain containing 25	protein coding gene	no	ENST00000517979.1	0.032	0.031	1.187	0.261(2502)	0.417(293)	0.516(8976)	non tumor-specific	exon_skip	yes
TMEM250_LS001	chr9:136114950|136115456:-	TMEM250	transmembrane protein 250	protein coding gene	no	ENST00000557985.2	5.476	2.305	5.510	0.604(5787)	0.548(385)	0.968(16823)	non tumor-specific	exon_skip;intron_retention	yes
LINC02055_LS019	chr8:136797370|136798032:+	LINC02055	long intergenic non-protein coding RNA 2055	lncRNA gene	no	ENST00000517345.5	0.417	0.013	0.707	0.054(520)	0.016(11)	0.03(513)	non tumor-specific	nAS	yes
CNPY1_LS005	chr7:155509097|155533760:-	CNPY1	canopy FGF signaling regulator 1	protein coding gene	no	ENST00000406197.5;ENST00000321736.5	0.590	0.000	5.698	0.026(253)	0(0)	0.037(643)	non tumor-specific	nAS	yes
NRXN1_LS029	chr2:50531430|50538253:-	NRXN1	neurexin 1	protein coding gene	no	ENST00000625672.2;ENST00000406316.6;ENST00000404971.5;ENST00000401669.6;ENST00000405472.7;ENST00000630543.2;ENST00000636298.1;ENST00000331040.9;ENST00000406859.7;ENST00000402717.6	4.611	2.516	3.201	0.096(917)	0.115(81)	0.518(9007)	non tumor-specific	exon_skip	yes
MON1B_LS012	chr16:77193777|77194337:+	MON1B	MON1 homolog B, secretory trafficking associated	protein coding gene	no	.;.	3.849	0.423	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_DPH6-DT_LS0005	chr15:35602762|35711707:+	DPH6-DT	DPH6 divergent transcript	lncRNA gene	no	.	1.781	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TNS2_LS0006	chr12:53047373|53050040:+	TNS2	tensin 2	protein coding gene	no	.	0.519	0.125	0.000	0.006(56)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
FRYL_LS068	chr4:48609067|48609744:-	FRYL	FRY like transcription coactivator	protein coding gene	no	ENST00000503238.5;ENST00000358350.8;ENST00000507711.5	5.043	3.216	3.018	0.539(5165)	0.764(536)	0.836(14540)	non tumor-specific	exon_skip	yes
UN_HOOK2_LS0260	chr19:12797145|12799899:+	HOOK2	hook microtubule tethering protein 2	protein coding gene	no	.	4.294	0.085	0.000	0.014(135)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_DDX20_LS0006	chr1:111763007|111764402:+	DDX20	DEAD-box helicase 20	protein coding gene	no	.	2.958	0.804	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
ADAMTS7P3_LS009	chr15:77988024|77988463:+	ADAMTS7P3	ADAMTS7 pseudogene 3	pseudogene	no	ENST00000566116.1	0.449	0.000	0.957	0.001(13)	0(0)	0.061(1058)	non tumor-specific	nAS	yes
UN_SPRY4-AS1_LS0052	chr5:142530125|142542266:+	SPRY4-AS1	SPRY4 antisense RNA 1	lncRNA gene	no	.	1.690	0.411	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SEMA4F_LS0014	chr2:74679741|74679952:+	SEMA4F	ssemaphorin 4F	protein coding gene	no	.	4.438	0.635	0.000	0.007(65)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_POLR2H_LS0034	chr3:184367935|184368039:-	POLR2H	RNA polymerase II, I and III subunit H	protein coding gene	no	.	2.192	0.503	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
EXO1_LS028	chr1:241885507|241892524:+	EXO1	exonuclease 1	protein coding gene	no	ENST00000518741.1	0.683	0.000	0.665	0(4)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_RBFOX1_LS0023	chr16:5888794|5889864:-	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	.	4.015	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
ITGB5_LS017	chr3:124817710|124819739:-	ITGB5	integrin subunit beta 5	protein coding gene	no	ENST00000296181.8;ENST00000481591.5;ENST00000476988.2	130.792	88.060	104.148	0.986(9450)	0.997(700)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ANO9_LS0010	chr11:419348|419608:+	ANO9	anoctamin 9	protein coding gene	no	.	0.799	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CAPN3_LS026	chr15:42404955|42405926:+	CAPN3	calpain 3	protein coding gene	no	ENST00000569136.5;ENST00000397204.8;ENST00000565559.5	15.208	0.625	1.456	0.209(2001)	0.218(153)	0.47(8177)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PFKFB2_LS035	chr1:207071573|207078954:+	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein coding gene	no	ENST00000411990.6;ENST00000367079.3;ENST00000473310.5;ENST00000411990.6;ENST00000367079.3;ENST00000473310.5	6.662	8.052	3.654	0.849(8138)	0.88(618)	0.898(15611)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC006453.1_UP_LS0196	chr2:90070168|90173343:-	AC006453.1	-	pseudogene	no	.	15.582	4.436	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL590648.2_UP_LS0022	chr1:212639468|212664587:-	AL590648.2	-	lncRNA gene	no	.	1.828	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
VTN_LS006	chr17:28369851|28369927:-	VTN	vitronectin	protein coding gene	no	ENST00000226218.8;ENST00000542029.1	359.970	785.025	2.905	0.357(3425)	0.537(377)	0.821(14262)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MORC2_LS012	chr22:30937002|30940758:-	MORC2	MORC family CW-type zinc finger 2	protein coding gene	no	ENST00000469915.1	0.447	0.196	0.699	0.72(6900)	0.658(462)	0.146(2530)	non tumor-specific	nAS	yes
UN_AHDC1_LS0003	chr1:27534916|27535459:-	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	1.828	0.364	0.000	0.015(143)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PLD2_LS0006	chr17:4808171|4808274:+	PLD2	phospholipase D2	protein coding gene	no	.	2.209	0.563	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AP003108.2_LS001	chr11:61429350|61437625:+	AP003108.2	-	protein coding gene	no	ENST00000544025.5	0.419	0.102	0.661	0.067(639)	0.087(61)	0.015(257)	non tumor-specific	nAS	yes
UN_FCGR1CP_LS0010	chr1:143878716|143880437:+	FCGR1CP	Fc fragment of IgG receptor Ic, pseudogene	pseudogene	no	.	1.683	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BCKDK_LS0013	chr16:31112027|31112090:+	BCKDK	branched chain keto acid dehydrogenase kinase	protein coding gene	no	.	27.436	7.561	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
LINC01473_LS006	chr2:186058969|186081330:-	LINC01473	long intergenic non-protein coding RNA 1473	lncRNA gene	no	ENST00000427108.5	0.087	0.057	1.031	0.121(1161)	0.12(84)	0.465(8078)	non tumor-specific	nAS	yes
CCDC68_LS006	chr18:54928882|54934820:-	CCDC68	coiled-coil domain containing 68	protein coding gene	no	ENST00000591504.5;ENST00000432185.5;ENST00000592040.5;ENST00000337363.8;ENST00000592294.1	3.865	6.067	4.120	0.676(6476)	0.913(641)	0.842(14633)	non tumor-specific	nAS	yes
MDH1B_LS015	chr2:206751075|206755009:-	MDH1B	malate dehydrogenase 1B	protein coding gene	no	ENST00000374412.7;ENST00000449792.5;ENST00000454776.6	1.848	1.275	2.085	0.391(3743)	0.531(373)	0.662(11505)	non tumor-specific	exon_skip	yes
UN_AC093849.1_UP_LS0002	chr4:173518305|173518979:-	AC093849.1	-	lncRNA gene	no	.	1.084	0.209	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
AP002026.1_LS024	chr4:99300655|99300951:+	AP002026.1	-	lncRNA gene	no	ENST00000500358.6;ENST00000509939.1	0.694	0.392	3.847	0.32(3069)	0.399(280)	0.766(13314)	non tumor-specific	nAS	yes
SERINC4_LS003	chr15:43795736|43796155:-	SERINC4	serine incorporator 4	protein coding gene	no	ENST00000448553.5;ENST00000457418.5;ENST00000299969.10;ENST00000319327.6;ENST00000412697.1	0.597	0.272	1.047	0.042(400)	0.038(27)	0.559(9723)	non tumor-specific	nAS	yes
UN_BGN_LS0059	chrX:153506567|153506859:-	BGN	biglycan	protein coding gene	no	.	2.881	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
WNK2_LS010	chr9:93256454|93256948:+	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	ENST00000427277.6;ENST00000297954.8;ENST00000395477.6;ENST00000432730.5;ENST00000411624.5	6.936	6.158	8.557	0.524(5024)	0.497(349)	0.783(13609)	non tumor-specific	exon_skip	yes
MUC4_LS408	chr3:195787513|195787754:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	3.760	0.400	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ORC2_LS0006	chr2:200920393|200921059:-	ORC2	origin recognition complex subunit 2	protein coding gene	no	.	1.743	0.615	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NEURL1B_LS0031	chr5:172689331|172689367:-	NEURL1B	neuralized E3 ubiquitin protein ligase 1B	protein coding gene	no	.	2.919	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF627_LS0062	chr19:11597630|11611781:+	ZNF627	zinc finger protein 627	protein coding gene	no	.	0.643	0.175	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
CPHL1P_LS021	chr3:149276901|149277336:-	CPHL1P	ceruloplasmin and hephaestin like 1, pseudogene	pseudogene	no	ENST00000482639.2	0.911	0.160	0.752	0.008(73)	0.034(24)	0.023(407)	non tumor-specific	nAS	yes
UN_LRRC43_LS0017	chr12:122201329|122201816:+	LRRC43	leucine rich repeat containing 43	protein coding gene	no	.	2.101	1.425	0.000	0.007(64)	0.023(16)	0(0)	non tumor-specific	alt_3prime	no
UN_TMCC1_LS0071	chr3:129857401|129880309:-	TMCC1	transmembrane and coiled-coil domain family 1	protein coding gene	no	.	4.135	0.608	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_RF00019_UP_LS0422	chr12:88301826|88316957:+	RF00019	-	small non-coding RNA gene	no	.	3.223	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM201_LS0022	chr1:9607789|9611753:+	TMEM201	transmembrane protein 201	protein coding gene	no	.	2.116	0.071	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LINC01766_UP_LS0001	chr19:35575779|35587021:+	LINC01766	long intergenic non-protein coding RNA 1766	lncRNA gene	no	.	1.144	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM129A_LS0010	chr1:184803692|184808074:-	FAM129A	niban apoptosis regulator 1	protein coding gene	no	.	1.706	0.069	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_GNAO1_LS0012	chr16:56335129|56336731:+	GNAO1	G protein subunit alpha o1	protein coding gene	no	.	1.168	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_BMP8A_LS0013	chr1:39521344|39521461:+	BMP8A	bone morphogenetic protein 8a	protein coding gene	no	.	1.639	2.284	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NOL4L_LS0098	chr20:32565263|32572385:+	NOL4L	nucleolar protein 4 like	protein coding gene	no	.	4.117	1.293	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC068987.3_LS001	chr12:51823570|51824110:+	AC068987.3	-	lncRNA gene	no	ENST00000567167.1	2.368	0.000	0.786	0.001(11)	0(0)	0.042(729)	non tumor-specific	nAS	yes
CD83_LS003	chr6:14118065|14131520:+	CD83	CD83 molecule	protein coding gene	no	ENST00000612003.4;ENST00000379153.3	21.081	19.217	4.463	0.955(9146)	0.989(694)	0.903(15703)	non tumor-specific	nAS	yes
ZNF75D_LS012	chrX:135291563|135292281:-	ZNF75D	zinc finger protein 75D	protein coding gene	no	ENST00000370766.7	8.134	5.993	5.742	0.906(8679)	0.956(671)	0.957(16628)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FBP1_UP_LS0011	chr9:94701058|94717717:-	FBP1	fructose-bisphosphatase 1	protein coding gene	yes	.	3.142	0.277	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PLBD2_LS0208	chr12:113390289|113390594:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	3.195	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
LAMA5_LS059	chr20:62326760|62326865:-	LAMA5	laminin subunit alpha 5	protein coding gene	no	ENST00000252999.7	41.673	23.986	45.570	0.901(8628)	0.947(665)	0.951(16532)	non tumor-specific	exon_skip	yes
RIMS1_LS047	chr6:72365816|72390598:+	RIMS1	regulating synaptic membrane exocytosis 1	protein coding gene	no	ENST00000431478.2	0.162	0.020	0.722	0.006(57)	0.009(6)	0.013(234)	non tumor-specific	nAS	yes
PTDSS2_LS024	chr11:490068|490420:+	PTDSS2	phosphatidylserine synthase 2	protein coding gene	no	ENST00000308020.5;ENST00000526878.5;ENST00000531411.1;ENST00000530029.1	70.356	34.790	54.652	0.992(9504)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SRGN_UP_LS0017	chr10:69087660|69088028:+	SRGN	serglycin	protein coding gene	no	.	12.316	13.639	0.000	0.041(394)	0.053(37)	0(0)	non tumor-specific	nAS	no
UN_SPINDOC_LS0014	chr11:63823310|63826928:+	SPINDOC	spindlin interactor and repressor of chromatin binding	protein coding gene	no	.	4.188	0.767	0.000	0.019(179)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DYNC1I1_LS017	chr7:95984977|95987056:+	DYNC1I1	dynein cytoplasmic 1 intermediate chain 1	protein coding gene	no	ENST00000537881.5;ENST00000447467.6;ENST00000324972.10;ENST00000630942.2;ENST00000437599.5;ENST00000359388.8;ENST00000457059.2;ENST00000519371.1	9.504	13.637	7.495	0.512(4909)	0.648(455)	0.875(15203)	non tumor-specific	alt_5prime;exon_skip	yes
ERBB3_LS023	chr12:56093550|56093764:+	ERBB3	erb-b2 receptor tyrosine kinase 3	protein coding gene	yes	ENST00000267101.7;ENST00000551085.5;ENST00000415288.6;ENST00000549205.1;ENST00000550828.1	45.487	33.199	10.940	0.906(8679)	0.962(675)	0.793(13785)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ARHGEF9_LS059	chrX:63795576|63809203:-	ARHGEF9	Cdc42 guanine nucleotide exchange factor 9	protein coding gene	no	ENST00000623417.3	0.386	0.000	0.960	0.002(16)	0(0)	0.016(274)	non tumor-specific	nAS	yes
ZNF451-AS1_LS007	chr6:57115563|57171005:-	ZNF451-AS1	ZNF451 regulatory antisense RNA 1	lncRNA gene	no	ENST00000416069.6	0.197	0.037	0.652	0.002(18)	0.001(1)	0.005(89)	non tumor-specific	nAS	yes
SPNS2_LS004	chr17:4530783|4531053:+	SPNS2	sphingolipid transporter 2	protein coding gene	no	ENST00000329078.7	22.907	42.893	27.030	0.833(7979)	0.967(679)	0.949(16487)	non tumor-specific	exon_skip	yes
UN_NOMO2_LS0586	chr16:18433378|18514388:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	32.800	2.746	0.000	0.008(72)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ITPR1_LS0047	chr3:4745468|4766530:+	ITPR1	inositol 1,4,5-trisphosphate receptor type 1	protein coding gene	no	.	1.275	0.161	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_ASIC1_LS0009	chr12:50078980|50080498:+	ASIC1	acid sensing ion channel subunit 1	protein coding gene	no	.	3.952	0.266	0.000	0.005(48)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
CTTNBP2_LS021	chr7:117767176|117777511:-	CTTNBP2	cortactin binding protein 2	protein coding gene	no	ENST00000160373.7;ENST00000446636.5;ENST00000441556.5	9.242	4.407	5.272	0.404(3875)	0.621(436)	0.853(14831)	non tumor-specific	exon_skip	yes
UN_FANCC_LS0061	chr9:95397283|95426724:-	FANCC	FA complementation group C	protein coding gene	no	.	1.048	0.045	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYO7B_LS0026	chr2:127620748|127621982:+	MYO7B	myosin VIIB	protein coding gene	no	.	2.439	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PRPF8_LS017	chr17:1658603|1659357:-	PRPF8	pre-mRNA processing factor 8	protein coding gene	no	.;.	12.181	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAMLD1_LS0043	chrX:150505096|150509962:+	MAMLD1	mastermind like domain containing 1	protein coding gene	no	.	1.675	0.392	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TEX29_LS0010	chr13:111337671|111339863:+	TEX29	testis expressed 29	protein coding gene	no	.	4.237	0.153	0.000	0.062(597)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_GMDS-DT_LS0075	chr6:2329404|2397221:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	.	1.394	0.125	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ACBD3_LS0004	chr1:226147054|226150076:+	ACBD3	acyl-CoA binding domain containing 3	protein coding gene	no	.	2.595	1.442	0.000	0.003(31)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_RAB23_LS0011	chr6:57210445|57222195:-	RAB23	RAB23, member RAS oncogene family	protein coding gene	yes	.	1.369	0.660	0.000	0.006(60)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
C1QTNF3_LS004	chr5:34028883|34033304:-	C1QTNF3	C1q and TNF related 3	protein coding gene	no	ENST00000382065.7;ENST00000231338.7	12.064	13.777	7.147	0.828(7934)	0.896(629)	0.926(16098)	non tumor-specific	intron_retention	yes
TNFRSF8_LS016	chr1:12135613|12142287:+	TNFRSF8	TNF receptor superfamily member 8	protein coding gene	no	ENST00000479933.2	0.381	0.128	0.625	0.028(266)	0.026(18)	0.031(547)	non tumor-specific	exon_skip	yes
UN_RNA5SP208_UP_LS0001	chr6:67879998|67894560:-	RNA5SP208	RNA, 5S ribosomal pseudogene 208	no	no	.	1.402	0.237	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL11A1_LS030	chr1:102962760|102965487:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	ENST00000370096.8;ENST00000358392.6;ENST00000353414.8;ENST00000635193.1;ENST00000512756.5	13.287	4.772	2.609	0.484(4641)	0.085(60)	0.464(8061)	non tumor-specific	exon_skip	yes
UN_RMI2_LS0043	chr16:11336739|11340789:-	RMI2	RecQ mediated genome instability 2	protein coding gene	no	.	2.075	0.214	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PDE4DIP_LS0013	chr1:148870760|148879182:-	PDE4DIP	phosphodiesterase 4D interacting protein	protein coding gene	no	.	3.557	0.025	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
APAF1_LS024	chr12:98712435|98715427:+	APAF1	apoptotic peptidase activating factor 1	protein coding gene	yes	ENST00000551964.5;ENST00000357310.5;ENST00000359972.6;ENST00000550527.5;ENST00000547045.5;ENST00000549007.1	11.124	5.265	5.045	0.831(7962)	0.903(634)	0.953(16561)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MARCH7_LS0009	chr2:159714598|159729009:+	MARCH7	membrane associated ring-CH-type finger 7	protein coding gene	no	.	2.098	0.853	0.000	0.043(409)	0.034(24)	0(0)	non tumor-specific	exon_skip	no
CARS2_LS032	chr13:110649297|110651034:-	CARS2	cysteinyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000537802.5	0.010	0.011	1.064	0.071(681)	0.056(39)	0.096(1667)	non tumor-specific	alt_3prime;exon_skip	yes
B4GALNT4_LS006	chr11:372947|373026:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	ENST00000329962.10	22.161	7.652	5.413	0.598(5734)	0.356(250)	0.792(13766)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TMC5_LS022	chr16:19464024|19466082:+	TMC5	transmembrane channel like 5	protein coding gene	no	ENST00000541464.5;ENST00000381414.8;ENST00000396229.6;ENST00000542583.6;ENST00000219821.9;ENST00000561503.5;ENST00000567478.5;ENST00000564959.1	23.432	15.731	2.188	0.505(4841)	0.62(435)	0.325(5656)	non tumor-specific	alt_5prime;exon_skip	yes
MARCH6_LS040	chr5:10415669|10417270:+	MARCH6	membrane associated ring-CH-type finger 6	protein coding gene	no	ENST00000449913.6;ENST00000511802.5;ENST00000503788.5;ENST00000274140.9;ENST00000510792.1;ENST00000512449.5;ENST00000505253.1;ENST00000514312.1	108.257	58.196	87.262	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CNOT11_LS0021	chr2:101260041|101260349:-	CNOT11	CCR4-NOT transcription complex subunit 11	protein coding gene	no	.	1.584	0.214	0.000	0.008(81)	0.006(4)	0(0)	non tumor-specific	nAS	no
LAP3_LS020	chr4:17606938|17607400:+	LAP3	leucine aminopeptidase 3	protein coding gene	no	ENST00000226299.8;ENST00000618908.4;ENST00000606142.5;ENST00000503467.1	206.828	130.064	126.069	0.971(9301)	0.962(675)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_AL136040.1_LS0001	chr14:81221279|81221639:+	AL136040.1	-	lncRNA gene	no	.	0.540	0.296	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
AHCYL2_LS009	chr7:129368551|129379641:+	AHCYL2	adenosylhomocysteinase like 2	protein coding gene	no	ENST00000474594.5;ENST00000474594.5	2.738	14.096	1.324	0.57(5459)	0.675(474)	0.496(8622)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ACAD9_LS044	chr3:128910149|128910741:+	ACAD9	acyl-CoA dehydrogenase family member 9	protein coding gene	no	ENST00000308982.11;ENST00000511227.5;ENST00000505867.5;ENST00000511526.5;ENST00000508971.1;ENST00000511325.1	98.411	51.840	66.183	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ERBB3_LS008	chr12:56083361|56083467:+	ERBB3	erb-b2 receptor tyrosine kinase 3	protein coding gene	yes	ENST00000415288.6	0.008	0.006	0.830	0.036(346)	0.007(5)	0.046(798)	non tumor-specific	exon_skip;intron_retention	yes
CCDC158_LS022	chr4:76384415|76384556:-	CCDC158	coiled-coil domain containing 158	protein coding gene	no	ENST00000388914.7;ENST00000434846.2;ENST00000509851.5	1.972	0.553	1.008	0.041(393)	0.14(98)	0.32(5554)	non tumor-specific	exon_skip	yes
UN_SYT12_LS0007	chr11:67024014|67030122:+	SYT12	synaptotagmin 12	protein coding gene	no	.	0.814	0.136	0.000	0.006(58)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CSF1_LS0008	chr1:109914138|109914259:+	CSF1	colony stimulating factor 1	protein coding gene	yes	.	0.867	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SUPT5H_LS041	chr19:39473521|39473963:+	SUPT5H	SPT5 homolog, DSIF elongation factor subunit	protein coding gene	no	ENST00000599117.5;ENST00000432763.6;ENST00000402194.6;ENST00000359191.10;ENST00000598725.5;ENST00000599335.5	203.401	96.894	93.903	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
IL1RAPL2_LS005	chrX:105267541|105484313:+	IL1RAPL2	interleukin 1 receptor accessory protein like 2	protein coding gene	no	ENST00000372582.5	2.476	0.396	0.797	0.034(329)	0.063(44)	0.105(1823)	non tumor-specific	nAS	yes
UN_TRIM47_LS0013	chr17:75874435|75874569:+	TRIM47	tripartite motif containing 47	protein coding gene	no	.	3.483	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SH3BP4_LS009	chr2:234978985|234995303:+	SH3BP4	SH3 domain binding protein 4	protein coding gene	no	ENST00000409212.5	0.234	0.184	0.725	0.289(2771)	0.433(304)	0.066(1151)	non tumor-specific	alt_5prime	yes
UN_MBNL3_LS0003	chrX:132392334|132404319:-	MBNL3	muscleblind like splicing regulator 3	protein coding gene	no	.	1.012	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TRIT1_LS013	chr1:39847747|39847986:-	TRIT1	tRNA isopentenyltransferase 1	protein coding gene	yes	ENST00000469476.2	1.685	0.821	1.849	0.661(6334)	0.58(407)	0.786(13663)	non tumor-specific	alt_3prime;intron_retention	yes
UN_DHRS4L1_UP_LS0246	chr14:23967266|23995122:+	DHRS4L1	dehydrogenase/reductase 4 like 1	pseudogene	no	.	28.828	3.282	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
INPP5K_LS011	chr17:1508226|1509168:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	ENST00000576646.7;ENST00000573790.5	2.301	1.995	1.574	0.724(6941)	0.832(584)	0.789(13717)	non tumor-specific	alt_5prime	yes
UN_SFXN4_LS0017	chr10:119165369|119165537:-	SFXN4	sideroflexin 4	protein coding gene	no	.	1.975	0.817	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MYL12AP1_UP_LS0004	chr8:93820236|93822450:+	MYL12AP1	myosin light chain 12A pseudogene 1	pseudogene	no	.	1.329	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_THSD4_LS0048	chr15:71227653|71242649:+	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	.	1.344	0.156	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KIAA0586_LS0014	chr14:58444175|58450579:+	KIAA0586	KIAA0586	protein coding gene	no	.	0.905	0.065	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DTX4_LS0005	chr11:59172326|59181996:-	DTX4	deltex E3 ubiquitin ligase 4	protein coding gene	no	.	0.809	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC135506.1_LS001	chr3:49144186|49144298:-	AC135506.1	-	pseudogene	no	ENST00000603877.1	2.839	0.000	0.707	0(3)	0(0)	0.033(577)	non tumor-specific	nAS	yes
UN_VPS13B_LS0136	chr8:99784476|99797265:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	.	0.400	0.006	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1211P_UP_LS0013	chr1:232267299|232269825:+	RNU6-1211P	RNA, U6 small nuclear 1211, pseudogene	small non-coding RNA gene	no	.	1.329	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
THSD4_LS008	chr15:71411823|71660530:+	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	ENST00000355327.7	7.499	7.541	2.506	0.538(5154)	0.836(587)	0.7(12172)	non tumor-specific	exon_skip	yes
UN_RPH3AL_UP_LS0002	chr17:404625|416791:-	RPH3AL	rabphilin 3A like (without C2 domains)	protein coding gene	no	.	1.086	1.853	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM102A_LS015	chr9:127953604|127953805:-	FAM102A	family with sequence similarity 102 member A	protein coding gene	no	ENST00000373095.5;ENST00000479828.1;ENST00000373095.5;ENST00000479828.1	90.945	81.875	28.318	0.985(9434)	0.997(700)	0.976(16970)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TBX1_LS0017	chr22:19763055|19763241:+	TBX1	T-box transcription factor 1	protein coding gene	no	.	0.986	0.536	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
SNAP25-AS1_LS006	chr20:10076913|10104286:-	SNAP25-AS1	SNAP25 antisense RNA 1	lncRNA gene	no	ENST00000426491.5	0.643	0.058	0.770	0.002(18)	0.001(1)	0.017(296)	non tumor-specific	nAS	yes
UN_MAP4K4_LS0026	chr2:101860986|101863827:+	MAP4K4	mitogen-activated protein kinase kinase kinase kinase 4	protein coding gene	no	.	3.117	0.880	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC02340_LS003	chr13:27190681|27207295:-	LINC02340	long intergenic non-protein coding RNA 2340	lncRNA gene	no	ENST00000610335.4	0.892	0.017	0.824	0.008(81)	0.001(1)	0.136(2368)	non tumor-specific	nAS	yes
UN_LPAR1_LS0040	chr9:111011690|111037841:-	LPAR1	lysophosphatidic acid receptor 1	protein coding gene	no	.	0.844	0.264	0.000	0.011(106)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
WDR41_LS032	chr5:77463226|77489457:-	WDR41	WD repeat domain 41	protein coding gene	no	ENST00000509892.5;ENST00000513417.5	0.028	0.032	1.284	0.851(8153)	0.903(634)	0.616(10707)	non tumor-specific	exon_skip	yes
ZFYVE16_LS017	chr5:80443920|80445263:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	ENST00000509558.1	0.448	0.398	1.001	0.33(3158)	0.349(245)	0.532(9253)	non tumor-specific	exon_skip	yes
TNKS_LS022	chr8:9733444|9734865:+	TNKS	tankyrase	protein coding gene	no	ENST00000310430.10;ENST00000518281.5	13.358	8.927	4.878	0.845(8092)	0.927(651)	0.944(16405)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GCGR_LS0009	chr17:81810909|81811010:+	GCGR	glucagon receptor	protein coding gene	no	.	2.488	1.176	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
SETD9_LS015	chr5:56914966|56925333:+	SETD9	SET domain containing 9	protein coding gene	no	ENST00000628593.1	0.412	0.223	0.844	0.48(4598)	0.655(460)	0.408(7099)	non tumor-specific	nAS	yes
DOCK6_LS066	chr19:11252958|11253639:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	ENST00000294618.11;ENST00000585609.1;ENST00000586482.1;ENST00000587572.1	7.149	4.892	9.843	0.899(8615)	0.926(650)	0.933(16218)	non tumor-specific	nAS	yes
RBM20_LS014	chr10:110831182|110835868:+	RBM20	RNA binding motif protein 20	protein coding gene	no	ENST00000369519.3;ENST00000480343.2	3.115	1.087	2.303	0.147(1408)	0.241(169)	0.666(11581)	non tumor-specific	exon_skip	yes
CLCNKB_LS027	chr1:16055523|16055678:+	CLCNKB	chloride voltage-gated channel Kb	protein coding gene	no	ENST00000375667.7;ENST00000431772.1	34.581	45.985	1.549	0.255(2441)	0.5(351)	0.481(8356)	non tumor-specific	alt_3prime	yes
UN_ZNF800_LS0012	chr7:127373479|127386060:-	ZNF800	zinc finger protein 800	protein coding gene	no	.	0.454	0.014	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
XDH_LS019	chr2:31370478|31372228:-	XDH	xanthine dehydrogenase	protein coding gene	no	ENST00000379416.3	6.242	9.250	1.873	0.415(3978)	0.432(303)	0.291(5057)	non tumor-specific	nAS	yes
HTT_LS058	chr4:3206983|3207281:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10	26.022	18.605	19.650	0.915(8769)	0.976(685)	0.978(16997)	non tumor-specific	alt_3prime	yes
COX14_LS012	chr12:50118552|50120036:+	COX14	cytochrome c oxidase assembly factor COX14	protein coding gene	no	ENST00000550654.1	2.705	5.176	4.398	0.95(9104)	0.96(674)	0.858(14915)	non tumor-specific	exon_skip;mutex_exons	yes
GRIPAP1_LS035	chrX:48999299|48999438:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	ENST00000593475.5;ENST00000622599.4;ENST00000376423.8;ENST00000611757.4;ENST00000622231.1;ENST00000617369.4;ENST00000611705.4;ENST00000495258.1	38.303	25.290	39.271	0.989(9471)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
HM13_LS031	chr20:31547692|31550064:+	HM13	histocompatibility minor 13	protein coding gene	no	.;.	16.833	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
AC026888.1_LS002	chr14:79072503|79074548:-	AC026888.1	-	lncRNA gene	no	ENST00000556145.1	3.606	0.234	0.754	0.03(283)	0.144(101)	0.013(228)	non tumor-specific	nAS	yes
AC090616.5_LS003	chr17:32091848|32094862:-	AC090616.5	-	pseudogene	no	ENST00000581225.5;ENST00000582111.2	1.773	0.000	0.729	0(4)	0(0)	0.07(1211)	non tumor-specific	nAS	yes
UN_AL353803.3_UP_LS0006	chr9:129447054|129462365:-	AL353803.3	-	pseudogene	no	.	2.829	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
KCTD13_LS010	chr16:29911867|29911960:-	KCTD13	potassium channel tetramerization domain containing 13	protein coding gene	no	ENST00000308768.9;ENST00000568000.5;ENST00000566842.5;ENST00000568995.1;ENST00000563955.5;ENST00000563264.1	43.722	21.532	30.947	0.994(9521)	0.996(699)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TRIM43_LS001	chr2:95592149|95594020:+	TRIM43	tripartite motif containing 43	protein coding gene	no	ENST00000272395.2	2.921	0.311	0.703	0.045(433)	0.003(2)	0.008(135)	non tumor-specific	nAS	yes
UN_A2ML1_LS0025	chr12:8864008|8867989:+	A2ML1	alpha-2-macroglobulin like 1	protein coding gene	no	.	9.271	4.306	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PDZRN3_LS015	chr3:73404395|73561451:-	PDZRN3	PDZ domain containing ring finger 3	protein coding gene	no	ENST00000466780.5	0.178	0.621	1.131	0.06(578)	0.145(102)	0.132(2289)	non tumor-specific	nAS	yes
SPINT2_LS009	chr19:38265646|38283627:+	SPINT2	serine peptidase inhibitor, Kunitz type 2	protein coding gene	yes	ENST00000592007.1	0.125	0.079	0.700	0.765(7327)	0.828(581)	0.068(1188)	non tumor-specific	nAS	yes
UN_TXNL1_LS0026	chr18:56626456|56638343:-	TXNL1	thioredoxin like 1	protein coding gene	no	.	6.381	0.823	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
FUT3_LS021	chr19:5846966|5848740:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	ENST00000587183.1	0.454	0.677	2.359	0.077(736)	0.152(107)	0.053(913)	non tumor-specific	alt_3prime	yes
UN_PRKCSH_LS0001	chr19:11435443|11435648:+	PRKCSH	protein kinase C substrate 80K-H	protein coding gene	no	.	2.206	2.044	0.000	0.013(124)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MEIS3_LS023	chr19:47417350|47418170:-	MEIS3	Meis homeobox 3 pseudogene 1	protein coding gene	no	ENST00000561204.5	0.089	0.134	1.573	0.029(278)	0.037(26)	0.106(1839)	non tumor-specific	exon_skip	yes
UN_DIAPH1_LS0205	chr5:141573985|141574046:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	2.632	0.760	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	nAS	no
MSN_LS004	chrX:65589068|65589646:+	MSN	moesin	protein coding gene	no	ENST00000439474.5;ENST00000609205.5	0.258	0.050	0.689	0.012(113)	0.023(16)	0.043(740)	non tumor-specific	exon_skip;mutex_exons	yes
TTTY5_LS001	chrY:22297788|22298306:-	TTTY5	testis-specific transcript, Y-linked 5	lncRNA gene	no	ENST00000400581.2	0.066	0.015	0.659	0.002(16)	0.006(4)	0.002(33)	non tumor-specific	nAS	yes
UN_KLC1_LS0049	chr14:103700727|103702074:+	KLC1	kinesin light chain 1	protein coding gene	no	.	1.311	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TPO_LS045	chr2:1504079|1516883:+	TPO	thyroid peroxidase	protein coding gene	no	ENST00000497517.6;ENST00000345913.8;ENST00000329066.8;ENST00000382201.7;ENST00000382198.5;ENST00000446278.5;ENST00000425083.3;ENST00000497517.6;ENST00000345913.8;ENST00000329066.8;ENST00000382201.7;ENST00000382198.5;ENST00000446278.5;ENST00000425083.3	17.993	93.204	3.661	0.087(832)	0.245(172)	0.743(12919)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
WDR25_LS009	chr14:100376704|100468021:+	WDR25	WD repeat domain 25	protein coding gene	no	ENST00000554492.5	0.100	0.068	0.783	0.313(3001)	0.282(198)	0.246(4273)	non tumor-specific	alt_5prime;exon_skip	yes
DAPK1_LS009	chr9:87638081|87639354:+	DAPK1	death associated protein kinase 1	protein coding gene	yes	ENST00000358077.9;ENST00000472284.5;ENST00000469640.6;ENST00000469067.5;ENST00000408954.7;ENST00000622514.4;ENST00000491893.5;ENST00000489291.5	11.498	11.699	7.242	0.789(7559)	0.933(655)	0.922(16033)	non tumor-specific	exon_skip	yes
UN_PTPRJ_LS0038	chr11:48042650|48110058:+	PTPRJ	protein tyrosine phosphatase receptor type J	protein coding gene	yes	.	0.771	0.125	0.000	0.019(185)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_WASHC2C_LS0010	chr10:45742073|45743390:+	WASHC2C	WASH complex subunit 2C	protein coding gene	no	.	2.810	0.969	0.000	0.02(195)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UXS1_LS024	chr2:106164784|106166056:-	UXS1	UDP-glucuronate decarboxylase 1	protein coding gene	no	ENST00000409501.7;ENST00000483426.5;ENST00000474920.1	40.451	32.148	11.563	0.983(9420)	0.994(698)	0.975(16952)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TULP3_LS0039	chr12:2931147|2933418:+	TULP3	TUB like protein 3	protein coding gene	no	.	1.953	0.464	0.000	0.011(110)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RPL8_UP_LS0037	chr8:144853580|144857572:-	RPL8	ribosomal protein L8	protein coding gene	no	.	1.113	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CNN1_LS004	chr19:11539560|11541076:+	CNN1	calponin 1	protein coding gene	yes	ENST00000592923.5	0.198	2.979	1.142	0.01(94)	0.057(40)	0.185(3223)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
LGALS3BP_LS012	chr17:78974819|78977140:-	LGALS3BP	galectin 3 binding protein	protein coding gene	no	ENST00000589906.5	0.941	1.212	0.650	0.981(9397)	0.993(697)	0.082(1425)	non tumor-specific	exon_skip;mutex_exons	yes
FER1L5_LS022	chr2:96684451|96685329:+	FER1L5	fer-1 like family member 5	protein coding gene	no	ENST00000436930.6;ENST00000641731.1;ENST00000624922.5;ENST00000623019.5;ENST00000623246.5;ENST00000457909.2	6.391	0.177	1.223	0.002(20)	0.004(3)	0.235(4078)	non tumor-specific	nAS	yes
TCOF1_LS022	chr5:150379732|150383065:+	TCOF1	treacle ribosome biogenesis factor 1	protein coding gene	no	ENST00000513538.2	0.128	0.120	0.806	0.627(6006)	0.536(376)	0.407(7082)	non tumor-specific	alt_3prime;exon_skip	yes
POLR3E_LS042	chr16:22328587|22333644:+	POLR3E	RNA polymerase III subunit E	protein coding gene	no	ENST00000359210.8;ENST00000359210.8	0.076	0.048	1.179	0.787(7537)	0.808(567)	0.654(11361)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
CYLD_LS001	chr16:50742124|50742762:+	CYLD	CYLD lysine 63 deubiquitinase	protein coding gene	yes	ENST00000569681.5;ENST00000569418.5;ENST00000569891.5;ENST00000311559.13;ENST00000566206.5;ENST00000566679.6	1.159	1.167	2.260	0.821(7867)	0.926(650)	0.842(14634)	non tumor-specific	nAS	yes
MAPK12_LS024	chr22:50256646|50256935:-	MAPK12	mitogen-activated protein kinase 12	protein coding gene	no	ENST00000497036.5;ENST00000215659.12	15.333	5.808	19.687	0.863(8265)	0.86(604)	0.958(16653)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AF241726.2_LS004	chrX:37426000|38666121:+	AF241726.2	-	protein coding gene	no	ENST00000465127.1	0.160	0.060	0.671	0.036(347)	0.053(37)	0.013(222)	non tumor-specific	nAS	yes
UN_AC097460.1_UP_LS0003	chr4:99872320|99872714:+	AC097460.1	-	lncRNA gene	no	.	1.569	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOXA3_LS0086	chr7:27129512|27140083:-	HOXA3	homeobox A3	protein coding gene	no	.	2.569	0.605	0.000	0.007(67)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC096719.1_LS0036	chr4:22286681|22292988:+	AC096719.1	-	lncRNA gene	no	.	1.376	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ASH2L_LS0010	chr8:38109975|38110379:+	ASH2L	ASH2 like, histone lysine methyltransferase complex subunit	protein coding gene	no	.	2.380	0.026	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LEPR_LS008	chr1:65596593|65598660:+	LEPR	leptin receptor	protein coding gene	no	ENST00000371059.7;ENST00000371060.7;ENST00000349533.10;ENST00000462765.5;ENST00000344610.12;ENST00000616738.4;ENST00000371058.1	3.727	9.310	5.330	0.663(6350)	0.952(668)	0.886(15396)	non tumor-specific	nAS	yes
TCF7_LS026	chr5:134143100|134143592:+	TCF7	transcription factor 7	protein coding gene	no	ENST00000342854.9;ENST00000395029.5;ENST00000522653.5;ENST00000378560.8;ENST00000520958.5;ENST00000518915.5;ENST00000395023.5;ENST00000519238.1;ENST00000517855.5;ENST00000517799.5;ENST00000520699.1;ENST00000342854.9;ENST00000395029.5;ENST00000522653.5;ENST00000378560.8;ENST00000520958.5;ENST00000518915.5;ENST00000395023.5;ENST00000519238.1;ENST00000517855.5;ENST00000517799.5;ENST00000520699.1	39.811	8.219	4.138	0.967(9264)	0.986(692)	0.878(15263)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
MMP19_LS029	chr12:55842438|55842744:-	MMP19	matrix metallopeptidase 19	protein coding gene	no	ENST00000548882.5;ENST00000322569.8;ENST00000552872.5;ENST00000548629.5;ENST00000409200.7;ENST00000552763.1;ENST00000547487.5	4.311	4.647	8.376	0.645(6178)	0.803(564)	0.794(13796)	non tumor-specific	alt_5prime;intron_retention	yes
PSMD13_LS014	chr11:244761|247277:+	PSMD13	proteasome 26S subunit, non-ATPase 13	protein coding gene	no	ENST00000532097.5;ENST00000534590.5;ENST00000431206.6;ENST00000528906.5;ENST00000621534.4;ENST00000525665.5;ENST00000527047.5;ENST00000352303.9;ENST00000382671.8;ENST00000526783.1	94.616	50.852	126.523	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ACTN4_LS0124	chr19:38724565|38725589:+	ACTN4	actinin alpha 4	protein coding gene	yes	.	55.451	20.330	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_DPY19L2P1_LS0018	chr7:35111305|35117748:-	DPY19L2P1	DPY19L2 pseudogene 1	pseudogene	no	.	2.423	0.122	0.000	0.02(193)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HEATR3_LS0038	chr16:50105252|50105782:+	HEATR3	HEAT repeat containing 3	protein coding gene	no	.	5.044	0.228	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_BTBD6_UP_LS0027	chr14:105139321|105140808:+	BTBD6	BTB domain containing 6	protein coding gene	no	.	7.366	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
MGST1_LS019	chr12:16357699|16367325:+	MGST1	microsomal glutathione S-transferase 1	protein coding gene	no	ENST00000542256.5;ENST00000538857.1	0.662	0.393	1.728	0.392(3753)	0.517(363)	0.558(9706)	non tumor-specific	exon_skip;mutex_exons	yes
PPP3CB_LS009	chr10:73446573|73454412:-	PPP3CB	protein phosphatase 3 catalytic subunit beta	protein coding gene	no	ENST00000360663.9;ENST00000342558.3;ENST00000360663.9;ENST00000342558.3	23.094	21.398	31.443	0.985(9434)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC25A14_LS009	chrX:130346691|130349251:+	SLC25A14	solute carrier family 25 member 14	protein coding gene	no	ENST00000612248.4;ENST00000543953.5;ENST00000545805.5;ENST00000495156.5;ENST00000464342.5;ENST00000464184.5;ENST00000424447.5;ENST00000218197.9;ENST00000467496.5;ENST00000361980.9;ENST00000339231.3;ENST00000467346.1	7.742	4.120	9.689	0.975(9340)	0.973(683)	0.971(16881)	non tumor-specific	exon_skip	yes
FRAS1_LS005	chr4:78068689|78070462:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000508909.5	1.064	0.166	0.663	0.007(63)	0.004(3)	0.014(236)	non tumor-specific	alt_3prime;exon_skip	yes
UN_XYLB_LS0004	chr3:38348632|38357014:+	XYLB	xylulokinase	protein coding gene	no	.	4.133	1.963	0.000	0.212(2032)	0.229(161)	0(0)	non tumor-specific	alt_3prime	no
MFAP3_LS008	chr5:154050017|154052920:+	MFAP3	microfibril associated protein 3	protein coding gene	no	ENST00000522782.5;ENST00000322602.9;ENST00000522177.1	10.200	7.119	8.508	0.846(8105)	0.893(627)	0.959(16677)	non tumor-specific	exon_skip	yes
SPAG4_LS025	chr20:35619310|35619579:+	SPAG4	sperm associated antigen 4	protein coding gene	no	ENST00000374273.7;ENST00000454819.1;ENST00000468248.5;ENST00000498203.1	15.926	4.346	6.639	0.92(8814)	0.934(656)	0.939(16320)	non tumor-specific	nAS	yes
MAGT1_LS003	chrX:77830895|77841246:-	MAGT1	magnesium transporter 1	protein coding gene	no	ENST00000358075.10;ENST00000610432.4;ENST00000618282.4	90.870	65.349	29.189	0.994(9521)	0.996(699)	0.979(17010)	non tumor-specific	exon_skip	yes
DYRK3_LS009	chr1:206639042|206647388:+	DYRK3	dual specificity tyrosine phosphorylation regulated kinase 3	protein coding gene	no	ENST00000649163.1	1.546	0.330	0.000	0.075(715)	0.054(38)	0(0)	non tumor-specific	exon_skip	yes
UN_CAB39L_LS0003	chr13:49309260|49309344:+	CAB39L	calcium binding protein 39 like	protein coding gene	no	.	2.942	2.033	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TSC22D4_UP_LS0020	chr7:100522838|100523063:-	TSC22D4	TSC22 domain family member 4	protein coding gene	no	.	0.760	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR90_LS056	chr16:662331|665679:+	WDR90	WD repeat domain 90	protein coding gene	no	ENST00000552728.5;ENST00000552728.5;ENST00000552728.5	0.130	0.084	1.021	0.578(5538)	0.305(214)	0.501(8706)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SOX9-AS1_LS015	chr17:72082041|72082122:-	SOX9-AS1	SOX9 antisense RNA 1	lncRNA gene	no	ENST00000602213.5	0.636	0.000	0.679	0.001(14)	0(0)	0.027(471)	non tumor-specific	nAS	yes
BCL9L_LS013	chr11:118918879|118925238:-	BCL9L	BCL9 like	protein coding gene	yes	ENST00000532899.2	15.664	12.113	13.209	0.892(8545)	0.942(661)	0.96(16689)	non tumor-specific	alt_5prime;exon_skip	yes
SLC25A27_LS008	chr6:46664886|46668709:+	SLC25A27	solute carrier family 25 member 27	protein coding gene	no	ENST00000411689.6;ENST00000371347.9;ENST00000603486.5;ENST00000604217.5;ENST00000604127.5;ENST00000604616.1	3.570	4.203	43.945	0.832(7968)	0.906(636)	0.943(16384)	non tumor-specific	exon_skip	yes
IFIH1_LS012	chr2:162282576|162288135:-	IFIH1	interferon induced with helicase C domain 1	protein coding gene	no	ENST00000649979.1;ENST00000263642.2;ENST00000649554.1;ENST00000648433.1	23.014	14.101	6.178	0.947(9073)	0.986(692)	0.949(16490)	non tumor-specific	nAS	yes
PXK_LS001	chr3:58333090|58365874:+	PXK	PX domain containing serine/threonine kinase like	protein coding gene	no	ENST00000356151.6;ENST00000302779.9;ENST00000383716.7;ENST00000484288.5;ENST00000477308.5	9.915	8.437	11.437	0.899(8614)	0.972(682)	0.974(16934)	non tumor-specific	exon_skip	yes
SLIT1_LS031	chr10:97058105|97059460:-	SLIT1	slit guidance ligand 3	protein coding gene	no	ENST00000371041.3	0.011	0.000	0.646	0.002(15)	0(0)	0.001(17)	non tumor-specific	nAS	yes
FHDC1_LS006	chr4:152960844|152962814:+	FHDC1	FH2 domain containing 1	protein coding gene	no	ENST00000511601.5;ENST00000260008.3	5.232	4.207	2.299	0.661(6329)	0.781(548)	0.65(11295)	non tumor-specific	exon_skip	yes
AC026462.3_LS002	chr16:52612696|52613653:+	AC026462.3	-	lncRNA gene	no	ENST00000565153.1;ENST00000566645.1	2.208	5.703	1.702	0.274(2627)	0.397(279)	0.084(1466)	non tumor-specific	nAS	yes
ARFGAP3_LS008	chr22:42817857|42822270:-	ARFGAP3	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	ENST00000263245.9;ENST00000437119.6;ENST00000453516.5	81.836	65.805	48.677	0.986(9444)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_AC011447.3_LS0160	chr19:20271664|20301309:-	AC011447.3	-	lncRNA gene	no	.	5.619	0.286	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EPB41L5_LS0059	chr2:120173060|120174895:-	EPB41L5	erythrocyte membrane protein band 4.1 like 5	protein coding gene	no	.	4.607	0.929	0.000	0.039(378)	0.004(3)	0(0)	non tumor-specific	nAS	no
KCNJ3_LS003	chr2:154709376|154709603:+	KCNJ3	potassium inwardly rectifying channel subfamily J member 3	protein coding gene	no	ENST00000493505.1	0.309	0.042	1.239	0.039(369)	0.075(53)	0.038(664)	non tumor-specific	nAS	yes
MAP4K4_LS012	chr2:101835978|101839819:+	MAP4K4	mitogen-activated protein kinase kinase kinase kinase 4	protein coding gene	no	ENST00000350878.8;ENST00000324219.8;ENST00000350198.8;ENST00000425019.5;ENST00000634702.1;ENST00000413150.6;ENST00000625522.2;ENST00000347699.8;ENST00000417294.5;ENST00000476609.1	20.143	12.454	23.360	0.97(9291)	0.99(695)	0.978(16996)	non tumor-specific	exon_skip	yes
UN_PECAM1_LS0044	chr17:64370025|64370724:-	PECAM1	platelet and endothelial cell adhesion molecule 1	protein coding gene	no	.	5.242	1.437	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
AK7_LS018	chr14:96487056|96487958:+	AK7	adenylate kinase 7	protein coding gene	no	ENST00000554706.1	0.440	0.154	1.056	0.398(3809)	0.598(420)	0.353(6139)	non tumor-specific	alt_3prime	yes
UN_MAP4K1_LS0029	chr19:38617916|38618357:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	.	0.416	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL160269.1_LS0026	chr9:96305391|96307017:-	AL160269.1	-	protein coding gene	no	.	1.850	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC104651.2_UP_LS0002	chr2:112040332|112040384:-	AC104651.2	-	pseudogene	no	.	4.800	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
RALB_LS019	chr2:120289757|120293141:+	RALB	RAS like proto-oncogene B	protein coding gene	no	ENST00000272519.9;ENST00000420510.5;ENST00000431732.5;ENST00000470417.1	94.986	73.036	70.841	0.962(9213)	0.974(684)	0.979(17021)	non tumor-specific	exon_skip	yes
TNKS_LS013	chr8:9706997|9708371:+	TNKS	tankyrase	protein coding gene	no	ENST00000520408.5;ENST00000310430.10;ENST00000518281.5;ENST00000517989.1	10.807	6.603	4.638	0.843(8075)	0.903(634)	0.944(16407)	non tumor-specific	nAS	yes
UN_CALM3_LS0044	chr19:46609424|46609576:+	CALM3	calmodulin 3	protein coding gene	no	.	66.842	40.179	0.000	0.014(135)	0.017(12)	0(0)	non tumor-specific	intron_retention	no
UN_NDUFB1_LS0006	chr14:92121399|92121642:-	NDUFB1	NADH:ubiquinone oxidoreductase subunit B1	protein coding gene	no	.	30.853	15.920	0.000	0.009(83)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_RDH13_LS0048	chr19:55045987|55046662:-	RDH13	retinol dehydrogenase 13	protein coding gene	no	.	0.879	0.085	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00839_LS005	chr10:42492342|42494015:+	LINC00839	long intergenic non-protein coding RNA 839	lncRNA gene	no	ENST00000429940.6;ENST00000424751.2	5.592	3.669	2.375	0.518(4963)	0.581(408)	0.67(11651)	non tumor-specific	nAS	yes
COL6A3_LS055	chr2:237395204|237396727:-	COL6A3	collagen type VI alpha 3 chain	protein coding gene	no	ENST00000295550.8;ENST00000433762.1	0.498	0.465	2.439	0.394(3774)	0.591(415)	0.58(10088)	non tumor-specific	alt_3prime;exon_skip	yes
C21orf91_LS004	chr21:17795270|17796582:-	C21orf91	chromosome 21 open reading frame 91	protein coding gene	no	ENST00000284881.8;ENST00000400559.7;ENST00000405964.2	14.733	7.638	8.901	0.954(9138)	0.994(698)	0.97(16852)	non tumor-specific	exon_skip	yes
UN_GOLGA5_LS0033	chr14:92824644|92833182:+	GOLGA5	golgin A5	protein coding gene	no	.	8.352	2.723	0.000	0.021(200)	0.02(14)	0(0)	non tumor-specific	alt_3prime	no
UN_SEMA4D_LS0003	chr9:89362166|89363744:+	SEMA4D	semaphorin 4D	protein coding gene	no	.	1.510	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
AC099489.1_LS008	chr16:11385065|11385211:-	AC099489.1	-	protein coding gene	no	ENST00000599216.5;ENST00000598234.6	4.624	1.777	2.649	0.101(969)	0.157(110)	0.824(14324)	non tumor-specific	alt_3prime;intron_retention	yes
BRAF_LS025	chr7:140808062|140808883:-	BRAF	B-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000642272.1	1.523	0.446	0.000	0.011(107)	0.007(5)	0(0)	non tumor-specific	alt_5prime	yes
UN_ZNF484_LS0002	chr9:92853958|92855811:-	ZNF484	zinc finger protein 484	protein coding gene	no	.	0.922	0.077	0.000	0.015(143)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_GMNN_LS0005	chr6:24777297|24780668:+	GMNN	geminin DNA replication inhibitor	protein coding gene	yes	.	4.041	0.614	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
PARP14_LS017	chr3:122713934|122714262:+	PARP14	poly(ADP-ribose) polymerase family member 14	protein coding gene	no	ENST00000474629.6;ENST00000649945.1;ENST00000460683.1;ENST00000474669.1	37.403	18.649	14.439	0.961(9207)	0.989(694)	0.972(16899)	non tumor-specific	alt_3prime;exon_skip	yes
CACNA1G_LS011	chr17:50590622|50591435:+	CACNA1G	calcium voltage-gated channel subunit alpha1 G	protein coding gene	no	ENST00000360761.8;ENST00000354983.8;ENST00000352832.9;ENST00000442258.6;ENST00000416767.8;ENST00000502264.5;ENST00000512389.5;ENST00000513964.5;ENST00000514717.5;ENST00000510366.5;ENST00000503485.5;ENST00000507510.6;ENST00000511765.5;ENST00000507336.5;ENST00000506406.5;ENST00000504076.5;ENST00000513689.6;ENST00000507609.5;ENST00000503436.5;ENST00000510115.5;ENST00000515165.5;ENST00000514181.5;ENST00000515765.5;ENST00000514079.5;ENST00000507896.5;ENST00000511768.5;ENST00000505165.5;ENST00000503607.5;ENST00000515411.5;ENST00000429973.6;ENST00000359106.9;ENST00000358244.9	4.455	1.148	1.554	0.081(780)	0.05(35)	0.441(7672)	non tumor-specific	nAS	yes
COQ6_LS009	chr14:73955509|73955805:+	COQ6	coenzyme Q6, monooxygenase	protein coding gene	no	ENST00000394026.8;ENST00000334571.6;ENST00000556300.6;ENST00000554920.5;ENST00000554193.5;ENST00000555552.5;ENST00000555196.5	23.625	20.130	19.543	0.988(9470)	0.996(699)	0.977(16978)	non tumor-specific	exon_skip;intron_retention	yes
STAT2_LS025	chr12:56350888|56351098:-	STAT2	signal transducer and activator of transcription 2	protein coding gene	no	ENST00000314128.8;ENST00000557235.5;ENST00000418572.6;ENST00000555519.5;ENST00000557252.1	39.580	19.571	66.059	0.982(9405)	0.989(694)	0.979(17020)	non tumor-specific	nAS	yes
MAP3K15_LS029	chrX:19460153|19464213:-	MAP3K15	mitogen-activated protein kinase kinase kinase 15	protein coding gene	no	ENST00000518578.5;ENST00000338883.8	2.316	3.427	0.989	0.04(384)	0.199(140)	0.106(1836)	non tumor-specific	nAS	yes
UN_DNAH8_LS0016	chr6:38800659|38803179:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	.	1.433	0.219	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_B4GALNT3_LS0084	chr12:562844|562866:+	B4GALNT3	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein coding gene	no	.	7.226	8.502	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLAMF1_LS008	chr1:160637529|160646870:-	SLAMF1	signaling lymphocytic activation molecule family member 1	protein coding gene	no	ENST00000302035.10;ENST00000235739.6;ENST00000538290.2;ENST00000494463.1	1.357	0.621	1.296	0.585(5604)	0.691(485)	0.393(6835)	non tumor-specific	exon_skip	yes
TLE4_LS039	chr9:79705942|79706747:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	ENST00000376552.6;ENST00000470872.5;ENST00000376537.8;ENST00000462803.5;ENST00000265284.10;ENST00000463431.5;ENST00000495170.1;ENST00000496114.5	11.321	11.629	18.395	0.899(8610)	0.972(682)	0.976(16971)	non tumor-specific	exon_skip	yes
ZNF556_LS001	chr19:2867424|2873496:+	ZNF556	zinc finger protein 556	protein coding gene	no	ENST00000586470.5;ENST00000586426.5;ENST00000307635.3	1.995	0.363	1.027	0.156(1498)	0.13(91)	0.128(2224)	non tumor-specific	nAS	yes
PSAP_LS006	chr10:71819622|71819714:-	PSAP	prosaposin	protein coding gene	no	ENST00000394936.7;ENST00000610929.3;ENST00000394934.4	2493.459	1802.915	1051.346	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GRHL2_LS0005	chr8:101492849|101493049:+	GRHL2	grainyhead like transcription factor 2	protein coding gene	no	.	2.132	0.000	0.000	0.007(65)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ATP13A4_LS0032	chr3:193506842|193533519:+	ATP13A4	ATPase 13A4	protein coding gene	no	.	5.802	0.917	0.000	0.002(16)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_FBLN2_LS0038	chr3:13629048|13630699:+	FBLN2	fibulin 2	protein coding gene	no	.	9.212	1.705	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
NBEAL1_LS011	chr2:203077837|203083219:+	NBEAL1	neurobeachin like 1	protein coding gene	no	ENST00000497505.5;ENST00000449802.5	2.302	1.570	2.100	0.259(2480)	0.58(407)	0.761(13223)	non tumor-specific	nAS	yes
TREML4_LS007	chr6:41236617|41237055:+	TREML4	triggering receptor expressed on myeloid cells like 4	protein coding gene	no	ENST00000341495.6;ENST00000461240.1	1.586	0.222	1.112	0.012(113)	0.001(1)	0.05(872)	non tumor-specific	alt_3prime	yes
CDK1_LS012	chr10:60788234|60791894:+	CDK1	cyclin dependent kinase 1	protein coding gene	yes	ENST00000448257.6;ENST00000487784.1	1.985	0.605	0.660	0.198(1899)	0.057(40)	0.071(1232)	non tumor-specific	nAS	yes
ARF4_LS010	chr3:57584464|57597074:-	ARF4	ADP ribosylation factor 4	protein coding gene	no	ENST00000303436.10;ENST00000486310.5;ENST00000483848.5;ENST00000463880.1;ENST00000493378.1	260.643	172.322	190.301	0.996(9539)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PSAP_LS0306	chr10:71828092|71828922:+	PSAP	prosaposin	protein coding gene	no	.	5.192	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPATA5_LS0033	chr4:123090705|123095270:+	SPATA5	spermatogenesis associated 5	protein coding gene	no	.	3.616	0.046	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_XAF1_LS0035	chr17:6758768|6758960:+	XAF1	XIAP associated factor 1	protein coding gene	yes	.	2.653	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CALM3_LS0132	chr19:46610303|46610496:-	CALM3	calmodulin 3	protein coding gene	no	.	10.267	0.171	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC43_LS004	chr12:122184779|122186190:+	LRRC43	leucine rich repeat containing 43	protein coding gene	no	ENST00000537729.5;ENST00000537113.5;ENST00000339777.4;ENST00000538800.1	2.820	2.414	1.799	0.401(3846)	0.526(369)	0.637(11071)	non tumor-specific	exon_skip	yes
GALK2_LS005	chr15:49156016|49161764:+	GALK2	galactokinase 2	protein coding gene	no	ENST00000559883.5;ENST00000559883.5	0.157	0.117	1.282	0.67(6422)	0.793(557)	0.698(12136)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RCL1_LS0014	chr9:4827033|4841205:+	RCL1	RNA terminal phosphate cyclase like 1	protein coding gene	no	.	0.586	0.041	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
CD276_LS020	chr15:73704472|73708339:+	CD276	CD276 molecule	protein coding gene	no	ENST00000318443.9;ENST00000537340.6;ENST00000318424.9;ENST00000561213.5;ENST00000560928.5;ENST00000564751.5;ENST00000557951.1;ENST00000559073.1	104.844	37.852	23.544	0.99(9483)	0.997(700)	0.945(16425)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_PLLP_LS0004	chr16:57249852|57250392:+	PLLP	plasmolipin	protein coding gene	no	.	11.407	3.005	0.000	0.016(150)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
POLG_LS038	chr15:89323511|89323815:-	POLG	DNA polymerase gamma, catalytic subunit	protein coding gene	no	ENST00000268124.9;ENST00000442287.6;ENST00000637264.1;ENST00000635986.1;ENST00000637238.1;ENST00000636774.1;ENST00000532584.5;ENST00000526398.1;ENST00000268124.9;ENST00000442287.6;ENST00000637264.1;ENST00000635986.1;ENST00000637238.1;ENST00000636774.1;ENST00000532584.5;ENST00000526398.1	34.354	19.831	41.697	0.985(9438)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MX2_LS028	chr21:41403343|41406744:+	MX2	MX dynamin like GTPase 2	protein coding gene	no	ENST00000330714.7;ENST00000482953.5;ENST00000481838.5;ENST00000330714.7;ENST00000482953.5;ENST00000481838.5	32.353	11.361	12.086	0.928(8891)	0.964(677)	0.959(16676)	non tumor-specific	alt_5prime;exon_skip	yes
ME1_LS006	chr6:83237830|83239539:-	ME1	protocadherin beta 16	protein coding gene	no	ENST00000369705.3	24.936	24.176	20.225	0.883(8464)	0.984(691)	0.966(16787)	non tumor-specific	alt_3prime;exon_skip	yes
CLIP1_LS009	chr12:122278203|122278792:-	CLIP1	CAP-Gly domain containing linker protein 1	protein coding gene	no	ENST00000361654.8;ENST00000545889.6;ENST00000302528.11;ENST00000358808.6;ENST00000620786.4;ENST00000537178.5;ENST00000536634.6;ENST00000648993.1;ENST00000538120.5;ENST00000540338.5;ENST00000543205.1	62.466	47.841	65.354	0.993(9513)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MRPS9_LS0019	chr2:105093638|105097162:+	MRPS9	mitochondrial ribosomal protein S9	protein coding gene	no	.	36.815	1.437	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UBTD1_UP_LS0004	chr10:97457350|97470192:+	UBTD1	ubiquitin domain containing 1	protein coding gene	no	.	0.675	0.064	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
PDXDC2P_LS020	chr16:70064776|70065756:-	PDXDC2P	pyridoxal dependent decarboxylase domain containing 2, pseudogene	pseudogene	no	ENST00000534580.5;ENST00000525173.1	0.103	0.164	0.813	0.517(4949)	0.628(441)	0.374(6504)	non tumor-specific	nAS	yes
LRRC36_LS012	chr16:67347591|67348481:+	LRRC36	leucine rich repeat containing 36	protein coding gene	no	ENST00000563303.5	0.457	0.008	0.714	0.001(8)	0.001(1)	0.018(317)	non tumor-specific	exon_skip	yes
UN_ENPP7P4_LS0017	chr3:125863113|125870711:-	ENPP7P4	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4	pseudogene	no	.	1.835	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF277_LS007	chr7:112296311|112318182:+	ZNF277	zinc finger protein 277	protein coding gene	no	ENST00000361822.7;ENST00000361946.8;ENST00000457808.5;ENST00000450657.1	25.127	17.329	16.527	0.986(9444)	0.997(700)	0.978(16993)	non tumor-specific	exon_skip	yes
DYNLL1_LS010	chr12:120495437|120496416:+	DYNLL1	dynein light chain LC8-type 1	protein coding gene	no	ENST00000549649.5	0.159	0.013	0.967	0.049(467)	0.016(11)	0.343(5963)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SLCO5A1_LS0008	chr8:69690262|69699324:-	SLCO5A1	solute carrier organic anion transporter family member 5A1	protein coding gene	no	.	5.820	12.687	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL158837.1_LS001	chr1:167052766|167058307:+	AL158837.1	-	lncRNA gene	no	ENST00000417644.1	0.485	1.018	0.701	0.001(10)	0.001(1)	0.006(100)	non tumor-specific	nAS	yes
ENO3_LS018	chr17:4953845|4955075:+	ENO3	enolase 3	protein coding gene	no	ENST00000520221.5;ENST00000522301.5;ENST00000519602.5;ENST00000323997.10;ENST00000522249.5;ENST00000521659.5;ENST00000519584.5;ENST00000518175.1	6.377	16.078	8.929	0.888(8509)	0.899(631)	0.975(16944)	non tumor-specific	nAS	yes
UN_CYTH4_LS0039	chr22:37309319|37311481:-	CYTH4	cytohesin 4	protein coding gene	no	.	1.656	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KMT2C_LS020	chr7:152154445|152154909:-	KMT2C	lysine methyltransferase 2C	protein coding gene	yes	ENST00000485241.1	0.026	0.031	0.663	0.476(4561)	0.573(402)	0.022(380)	non tumor-specific	intron_retention	yes
OGDH_LS005	chr7:44606653|44624321:+	OGDH	oxoglutarate dehydrogenase	protein coding gene	no	.;.	3.448	4.590	0.000	0.005(46)	0.023(16)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
VPS72_LS015	chr1:151185950|151190124:-	VPS72	vacuolar protein sorting 72 homolog	protein coding gene	no	ENST00000496809.5	0.137	0.118	0.695	0.861(8252)	0.825(579)	0.14(2425)	non tumor-specific	alt_5prime	yes
PAX6_LS003	chr11:31790860|31793438:-	PAX6	paired box 6	protein coding gene	yes	ENST00000606377.6;ENST00000640368.1;ENST00000419022.6;ENST00000643871.1;ENST00000638914.2;ENST00000640610.1;ENST00000379132.8;ENST00000379109.7;ENST00000379129.7;ENST00000639916.1;ENST00000645710.1;ENST00000379107.7;ENST00000638903.1;ENST00000639409.1;ENST00000640975.1;ENST00000638965.1;ENST00000241001.13;ENST00000638629.1;ENST00000639548.1;ENST00000640125.1;ENST00000481563.6;ENST00000639386.1;ENST00000638696.1;ENST00000638755.1;ENST00000470027.7;ENST00000640287.1;ENST00000533333.5;ENST00000640613.1;ENST00000423822.7;ENST00000639061.1;ENST00000640766.1;ENST00000471303.6;ENST00000379111.7;ENST00000639950.1;ENST00000464174.6;ENST00000638250.1;ENST00000379123.10;ENST00000640038.1;ENST00000524853.6;ENST00000640872.1;ENST00000639394.1;ENST00000640735.1;ENST00000639109.1;ENST00000638853.1;ENST00000640460.1;ENST00000638913.1;ENST00000638802.1;ENST00000638346.1;ENST00000530373.6;ENST00000379115.9;ENST00000639006.1;ENST00000639054.1;ENST00000640335.1;ENST00000638762.1;ENST00000438681.6;ENST00000638878.1;ENST00000639943.1;ENST00000640431.1	11.145	1.069	5.177	0.298(2853)	0.053(37)	0.359(6242)	non tumor-specific	exon_skip	yes
RNF14_LS006	chr5:141969167|141973583:+	RNF14	ring finger protein 14	protein coding gene	no	ENST00000347642.7;ENST00000502341.5;ENST00000506938.5	0.026	0.063	2.583	0.803(7690)	0.925(649)	0.82(14252)	non tumor-specific	alt_5prime;exon_skip	yes
TRIM47_LS008	chr17:75876492|75877874:-	TRIM47	tripartite motif containing 47	protein coding gene	no	.;.	1.310	0.591	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SYCP1_LS027	chr1:114944455|114944872:+	SYCP1	synaptonemal complex protein 1	protein coding gene	no	ENST00000369522.7;ENST00000455987.5;ENST00000618516.4;ENST00000613524.4;ENST00000369518.1;ENST00000482717.5	9.606	0.707	0.734	0.005(51)	0.003(2)	0.064(1118)	non tumor-specific	nAS	yes
LRRC24_LS005	chr8:144524269|144524441:-	LRRC24	leucine rich repeat containing 24	protein coding gene	no	ENST00000533758.1	0.072	0.043	1.340	0.454(4345)	0.308(216)	0.683(11869)	non tumor-specific	alt_3prime;intron_retention	yes
UNC80_LS043	chr2:209934005|209935714:+	UNC80	unc-80 homolog, NALCN channel complex subunit	protein coding gene	no	ENST00000439458.5;ENST00000272845.10;ENST00000489023.5	4.129	1.140	3.128	0.061(583)	0.016(11)	0.204(3546)	non tumor-specific	nAS	yes
UN_TNNI1_LS0019	chr1:201429274|201429599:-	TNNI1	troponin I1, slow skeletal type	protein coding gene	no	.	3.181	3.120	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
FGFR1_LS054	chr8:38458984|38467672:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	ENST00000413133.6	0.378	0.118	0.670	0.044(425)	0.09(63)	0.132(2292)	non tumor-specific	exon_skip	yes
RFC2_LS012	chr7:74243246|74249012:-	RFC2	replication factor C subunit 2	protein coding gene	no	ENST00000352131.7;ENST00000470266.5;ENST00000493156.6	0.676	0.576	2.076	0.898(8606)	0.839(589)	0.853(14821)	non tumor-specific	exon_skip	yes
UN_LINC01987_UP_LS0013	chr17:77877859|77882467:-	LINC01987	long intergenic non-protein coding RNA 1987	lncRNA gene	no	.	1.116	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POLD2_LS0053	chr7:44118060|44121830:-	POLD2	DNA polymerase delta 2, accessory subunit	protein coding gene	no	.	40.064	0.993	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
TRRAP_LS025	chr7:98925263|98927167:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1	7.736	3.993	6.252	0.804(7701)	0.883(620)	0.942(16382)	non tumor-specific	nAS	yes
PIGS_LS016	chr17:28571188|28571550:-	PIGS	phosphatidylinositol glycan anchor biosynthesis class S	protein coding gene	no	ENST00000584413.1	0.059	0.042	0.697	0.099(944)	0.095(67)	0.028(489)	non tumor-specific	alt_5prime	yes
UN_DANT1_UP_LS0015	chrX:115732806|115736974:+	DANT1	DXZ4 associated non-coding transcript 1, proximal	lncRNA gene	no	.	5.204	1.204	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
NBN_LS024	chr8:89982855|89984208:-	NBN	nibrin	protein coding gene	yes	ENST00000409330.5;ENST00000517337.1	0.023	0.039	0.610	0.41(3928)	0.506(355)	0.046(795)	non tumor-specific	nAS	yes
GATD3A_LS006	chr21:44133838|44136060:+	GATD3A	glutamine amidotransferase like class 1 domain containing 3A	protein coding gene	no	ENST00000645487.1;ENST00000493883.5;ENST00000645487.1;ENST00000493883.5	0.045	0.069	0.780	0.742(7111)	0.759(533)	0.159(2760)	non tumor-specific	alt_5prime;exon_skip	yes
AIDA_LS007	chr1:222687036|222687595:-	AIDA	axin interactor, dorsalization associated	protein coding gene	no	ENST00000340020.10;ENST00000474863.5;ENST00000355727.3;ENST00000470437.5;ENST00000497112.1	55.617	36.746	43.008	0.985(9437)	0.993(697)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
UN_OR9A2_UP_LS0006	chr7:143039491|143199119:-	OR9A2	olfactory receptor family 9 subfamily A member 2	protein coding gene	no	.	11.130	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BRD7_LS022	chr16:50340086|50350023:-	BRD7	bromodomain containing 7	protein coding gene	yes	ENST00000394688.7;ENST00000394689.2;ENST00000475877.5	63.396	38.249	39.266	0.991(9493)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
VRK2_LS027	chr2:58084138|58086339:+	VRK2	VRK serine/threonine kinase 2	protein coding gene	no	ENST00000412104.6	0.223	0.255	0.734	0.29(2778)	0.396(278)	0.248(4309)	non tumor-specific	exon_skip	yes
CASC4_LS019	chr15:44380976|44413336:+	CASC4	golgi membrane protein 2	protein coding gene	no	ENST00000345795.6;ENST00000558847.1	59.265	46.269	22.188	0.954(9138)	0.946(664)	0.976(16966)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC02540_LS002	chr6:76586566|76593527:-	LINC02540	long intergenic non-protein coding RNA 2540	lncRNA gene	no	ENST00000455554.2	0.049	0.000	0.702	0(1)	0(0)	0.001(24)	non tumor-specific	nAS	yes
UN_FBL_UP_LS0001	chr19:39854504|39863360:-	FBL	fibrillarin	protein coding gene	no	.	2.357	0.488	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPS6KC1_LS001	chr1:213051509|213071006:+	RPS6KC1	ribosomal protein S6 kinase C1	protein coding gene	no	ENST00000543354.5;ENST00000543470.5;ENST00000615329.4;ENST00000614059.4;ENST00000366960.7	4.841	3.360	5.587	0.854(8181)	0.925(649)	0.949(16497)	non tumor-specific	exon_skip	yes
PTPRR_LS002	chr12:70639277|70656704:-	PTPRR	protein tyrosine phosphatase receptor type R	protein coding gene	no	ENST00000440835.6;ENST00000378778.5;ENST00000537619.6;ENST00000547752.5;ENST00000283228.6;ENST00000342084.8;ENST00000549308.5;ENST00000549107.5	4.830	7.194	1.751	0.487(4662)	0.503(353)	0.579(10066)	non tumor-specific	exon_skip	yes
FREM1_LS045	chr9:14863903|14868744:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	ENST00000422223.6;ENST00000380875.7;ENST00000380880.3	7.463	3.301	1.598	0.154(1472)	0.449(315)	0.54(9394)	non tumor-specific	alt_3prime	yes
UN_KSR1_LS0020	chr17:27543973|27551887:-	KSR1	kinase suppressor of ras 1	protein coding gene	no	.	1.753	1.203	0.000	0.009(85)	0.011(8)	0(0)	non tumor-specific	nAS	no
SMG7_LS042	chr1:183546337|183549764:+	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	.;.	3.804	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SMAD6_LS007	chr15:66708738|66711668:+	SMAD6	SMAD family member 6	protein coding gene	no	.;.	5.184	2.411	0.000	0.17(1629)	0.145(102)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TSPAN14_LS0001	chr10:80454371|80468547:+	TSPAN14	tetraspanin 14	protein coding gene	no	.	4.412	2.887	0.000	0.828(7935)	0.897(630)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SPATA13-AS1_LS001	chr13:24252956|24253079:-	SPATA13-AS1	SPATA13 antisense RNA 1	lncRNA gene	no	ENST00000430733.1	0.293	0.064	0.705	0.028(273)	0.021(15)	0.02(347)	non tumor-specific	nAS	yes
HELZ_LS003	chr17:67107685|67108492:-	HELZ	helicase with zinc finger	protein coding gene	no	ENST00000358691.9;ENST00000579953.5;ENST00000580168.5	24.257	12.591	12.563	0.955(9152)	0.98(688)	0.977(16987)	non tumor-specific	nAS	yes
UN_AL022161.1_UP_LS0004	chrX:94480544|94489183:+	AL022161.1	-	pseudogene	no	.	2.438	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MX1_LS024	chr21:41439848|41440887:+	MX1	MX dynamin like GTPase 1	protein coding gene	no	ENST00000398600.6;ENST00000455164.6;ENST00000398598.7;ENST00000417963.5;ENST00000288383.10;ENST00000619682.1	75.100	40.853	26.048	0.984(9424)	0.996(699)	0.977(16983)	non tumor-specific	exon_skip	yes
UN_VANGL1_LS0011	chr1:115663457|115663661:+	VANGL1	VANGL planar cell polarity protein 1	protein coding gene	no	.	1.087	0.036	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CYP1B1_LS005	chr2:38071310|38109669:-	CYP1B1	cytochrome P450 family 1 subfamily B member 1	protein coding gene	no	ENST00000494864.1	0.021	0.011	0.560	0.321(3075)	0.547(384)	0.001(22)	non tumor-specific	nAS	yes
MGST1_LS015	chr12:16357699|16360300:+	MGST1	microsomal glutathione S-transferase 1	protein coding gene	no	ENST00000539708.5	0.175	3.062	1.280	0.514(4924)	0.697(489)	0.4(6953)	non tumor-specific	exon_skip	yes
SLC22A1_LS001	chr6:160122346|160130104:+	SLC22A1	solute carrier family 22 member 1	protein coding gene	no	ENST00000366963.8;ENST00000642587.1;ENST00000324965.8;ENST00000457470.6;ENST00000460902.2	2.811	46.742	0.819	0.058(552)	0.178(125)	0.317(5504)	non tumor-specific	alt_5prime;exon_skip	yes
MTG1_LS006	chr10:133398515|133399170:+	MTG1	mitochondrial ribosome associated GTPase 1	protein coding gene	no	ENST00000477902.6;ENST00000317502.10;ENST00000432508.3;ENST00000460848.5;ENST00000495014.5;ENST00000498790.5;ENST00000473735.1	69.034	38.432	42.007	0.997(9550)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_PES1P1_UP_LS0006	chr4:133552429|133555385:+	PES1P1	pescadillo ribosomal biogenesis factor 1 pseudogene 1	pseudogene	no	.	3.971	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
EXOC3_LS019	chr5:462529|464290:+	EXOC3	exocyst complex component 3	protein coding gene	no	ENST00000515601.6	11.931	0.748	1.208	0.119(1138)	0.073(51)	0.609(10594)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FUT3_LS002	chr19:5844851|5851390:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	ENST00000458379.7	0.085	0.313	1.427	0.261(2503)	0.315(221)	0.106(1850)	non tumor-specific	exon_skip	yes
UN_IL24_LS0002	chr1:206897615|206899317:+	IL24	interleukin 24	protein coding gene	yes	.	2.761	0.588	0.000	0.076(731)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
VEZT_LS056	chr12:95266396|95266402:+	VEZT	vezatin, adherens junctions transmembrane protein	protein coding gene	yes	ENST00000261219.7	0.033	0.000	0.589	0.001(11)	0.001(1)	0.009(156)	non tumor-specific	nAS	yes
UN_NPSR1_UP_LS0004	chr7:34175331|34263250:+	NPSR1	neuropeptide S receptor 1	protein coding gene	no	.	1.489	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SEC14L1_LS444	chr17:77216153|77216193:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	3.099	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MALRD1_LS015	chr10:19203880|19204308:+	MALRD1	MAM and LDL receptor class A domain containing 1	protein coding gene	no	ENST00000454679.6;ENST00000377266.7	4.813	5.140	0.965	0.031(295)	0.034(24)	0.023(407)	non tumor-specific	nAS	yes
UN_AC113385.3_LS0004	chr5:100375784|100381211:-	AC113385.3	-	pseudogene	no	.	1.697	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
MCMBP_LS009	chr10:119842595|119843248:-	MCMBP	minichromosome maintenance complex binding protein	protein coding gene	no	ENST00000360003.7	41.942	20.387	15.336	0.979(9381)	0.993(697)	0.977(16975)	non tumor-specific	alt_5prime	yes
UN_GLRX_UP_LS0001	chr5:95830298|95833183:-	GLRX	glutaredoxin	protein coding gene	no	.	1.206	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
GABRA1_LS009	chr5:161854270|161865721:+	GABRA1	gamma-aminobutyric acid type A receptor subunit alpha1	protein coding gene	no	ENST00000638112.1;ENST00000023897.10;ENST00000393943.9;ENST00000428797.7;ENST00000637044.1;ENST00000636340.1;ENST00000437025.6;ENST00000519621.2;ENST00000636573.1;ENST00000521339.5;ENST00000638159.1;ENST00000637827.1;ENST00000522651.6;ENST00000634335.1;ENST00000635880.1	1.354	5.585	10.044	0.065(620)	0.016(11)	0.162(2810)	non tumor-specific	nAS	yes
UN_KRT73-AS1_UP_LS0108	chr12:52447881|52469729:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	31.819	10.884	0.000	0.036(344)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_PTPRG_LS0056	chr3:62217342|62217753:-	PTPRG	protein tyrosine phosphatase receptor type G	protein coding gene	no	.	2.155	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
PABPC1L_LS046	chr20:44936730|44952643:+	PABPC1L	poly(A) binding protein cytoplasmic 1 like	protein coding gene	no	.;.	0.898	0.256	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
CHST11_LS001	chr12:104455636|104456916:+	CHST11	carbohydrate sulfotransferase 11	protein coding gene	no	ENST00000550711.1	0.188	0.055	0.637	0.113(1084)	0.057(40)	0.01(170)	non tumor-specific	alt_3prime	yes
UN_TBX18-AS1_UP_LS0003	chr6:84033370|84055312:+	TBX18-AS1	TBX18 antisense RNA 1	lncRNA gene	no	.	1.548	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BRSK2_LS003	chr11:1409859|1436040:+	BRSK2	BR serine/threonine kinase 2	protein coding gene	no	ENST00000524702.5	0.135	0.196	2.775	0.082(789)	0.009(6)	0.094(1629)	non tumor-specific	nAS	yes
COMP_LS017	chr19:18788913|18789160:-	COMP	cartilage oligomeric matrix protein	protein coding gene	no	ENST00000542601.6;ENST00000222271.6	16.220	5.199	8.970	0.565(5417)	0.444(312)	0.693(12046)	non tumor-specific	nAS	yes
UN_FAM160A1_LS0006	chr4:151458433|151482524:+	FAM160A1	family with sequence similarity 160 member A1	protein coding gene	no	.	1.064	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
TMEM173_LS019	chr5:139481342|139481478:-	TMEM173	stimulator of interferon response cGAMP interactor 1	protein coding gene	no	ENST00000330794.8;ENST00000512606.5;ENST00000510817.1;ENST00000515507.5	42.832	25.830	35.313	0.988(9466)	0.994(698)	0.972(16900)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AKT1_LS0087	chr14:104793304|104794790:-	AKT1	AKT serine/threonine kinase 1	protein coding gene	yes	.	1.142	0.060	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC073107.1_LS0051	chr7:65726496|65726771:-	AC073107.1	-	pseudogene	no	.	2.179	0.188	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DAZAP1_LS0035	chr19:1428901|1428954:+	DAZAP1	DAZ associated protein 1	protein coding gene	no	.	19.002	0.510	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
NPRL2_LS022	chr3:50349494|50349931:-	NPRL2	NPR2 like, GATOR1 complex subunit	protein coding gene	yes	ENST00000429366.5;ENST00000429366.5;ENST00000429366.5	0.046	0.049	0.936	0.35(3353)	0.376(264)	0.469(8151)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CHPF_LS0064	chr2:219539431|219539798:+	CHPF	chondroitin polymerizing factor	protein coding gene	no	.	1.456	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
OTOA_LS008	chr16:21685361|21687413:+	OTOA	otoancorin	protein coding gene	no	ENST00000646100.1;ENST00000647277.1;ENST00000286149.8;ENST00000388958.8;ENST00000388956.8	2.296	0.108	0.778	0.018(175)	0.001(1)	0.077(1343)	non tumor-specific	nAS	yes
ACAP1_LS008	chr17:7343562|7343706:+	ACAP1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein coding gene	no	ENST00000158762.7;ENST00000570457.6;ENST00000573893.5;ENST00000571220.1	7.994	2.905	4.824	0.788(7547)	0.828(581)	0.863(14999)	non tumor-specific	alt_5prime;intron_retention	yes
UN_RNF212B_LS0023	chr14:23232548|23234378:+	RNF212B	ring finger protein 212B	protein coding gene	no	.	3.276	1.334	0.000	0.012(112)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC38A7_LS026	chr16:58680241|58684717:-	SLC38A7	solute carrier family 38 member 7	protein coding gene	no	ENST00000562397.5	0.322	0.212	0.765	0.324(3107)	0.321(225)	0.144(2508)	non tumor-specific	exon_skip	yes
SWT1_LS016	chr1:185214655|185221849:+	SWT1	SWT1 RNA endoribonuclease homolog	protein coding gene	no	ENST00000367501.7;ENST00000367500.8	7.715	5.026	6.544	0.909(8712)	0.943(662)	0.971(16871)	non tumor-specific	exon_skip	yes
KAT5_LS018	chr11:65714910|65716667:+	KAT5	lysine acetyltransferase 5	protein coding gene	yes	ENST00000377046.7;ENST00000352980.8;ENST00000341318.8;ENST00000530446.5;ENST00000534650.5	120.071	81.669	81.589	0.996(9543)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TBL2_LS0010	chr7:73572945|73573320:-	TBL2	transducin beta like 2	protein coding gene	yes	.	4.758	1.154	0.000	0.047(448)	0.043(30)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DGKE_LS002	chr17:56835259|56844019:+	DGKE	diacylglycerol kinase epsilon	protein coding gene	no	ENST00000284061.7;ENST00000576869.5;ENST00000572944.1	2.617	1.408	2.698	0.542(5189)	0.761(534)	0.849(14755)	non tumor-specific	exon_skip	yes
TREX2_LS001	chrX:153445464|153445599:-	TREX2	three prime repair exonuclease 2	protein coding gene	yes	ENST00000393862.6	0.448	0.000	0.695	0.007(66)	0(0)	0.046(802)	non tumor-specific	exon_skip;intron_retention	yes
AP002008.2_LS003	chr11:111450784|111450963:+	AP002008.2	-	pseudogene	no	ENST00000531009.1	5.920	0.000	0.713	0(2)	0(0)	0.002(29)	non tumor-specific	nAS	yes
GRIN3A_LS003	chr9:101579360|101613376:-	GRIN3A	glutamate ionotropic receptor NMDA type subunit 3A	protein coding gene	no	ENST00000361820.3	3.845	1.257	1.079	0.061(585)	0.04(28)	0.125(2176)	non tumor-specific	nAS	yes
UN_RPTN_LS0008	chr1:152155438|152156087:-	RPTN	repetin	protein coding gene	no	.	11.192	9.725	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_GLB1L2_LS0025	chr11:134374439|134375539:-	GLB1L2	galactosidase beta 1 like 2	protein coding gene	no	.	0.304	0.025	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
DAGLA_LS001	chr11:61680504|61720112:+	DAGLA	diacylglycerol lipase alpha	protein coding gene	no	ENST00000257215.9;ENST00000540717.1	1.295	0.890	1.321	0.452(4328)	0.584(410)	0.589(10230)	non tumor-specific	nAS	yes
UN_ZNF433-AS1_LS0003	chr19:11987823|12001130:+	ZNF433-AS1	ZNF433 and ZNF878 antisense RNA 1	lncRNA gene	no	.	1.642	0.365	0.000	0.023(216)	0.016(11)	0(0)	non tumor-specific	nAS	no
SYT4_LS008	chr18:43274394|43277248:-	SYT4	synaptotagmin 4	protein coding gene	no	ENST00000255224.7;ENST00000593720.1	7.220	2.941	3.773	0.124(1184)	0.165(116)	0.291(5055)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ERLEC1_LS009	chr2:53801620|53801713:+	ERLEC1	endoplasmic reticulum lectin 1	protein coding gene	no	ENST00000405123.7;ENST00000185150.8;ENST00000378239.5	135.024	95.609	66.955	0.996(9538)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
LIMS1_LS002	chr2:108588425|108659605:+	LIMS1	LIM zinc finger domain containing 1	protein coding gene	no	ENST00000332345.10	1.849	0.757	1.100	0.674(6454)	0.642(451)	0.377(6559)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PLRG1_UP_LS0001	chr4:154570747|154571466:-	PLRG1	pleiotropic regulator 1	protein coding gene	no	.	8.228	5.123	0.000	0.003(31)	0.011(8)	0(0)	non tumor-specific	nAS	no
FAT1_LS038	chr4:186709845|186723664:-	FAT1	FAT atypical cadherin 1	protein coding gene	yes	ENST00000441802.6;ENST00000614102.4	0.682	0.749	1.032	0.467(4472)	0.684(480)	0.41(7120)	non tumor-specific	alt_5prime;exon_skip	yes
CNBP_LS011	chr3:129171538|129171634:-	CNBP	CCHC-type zinc finger nucleic acid binding protein	protein coding gene	no	ENST00000422453.6;ENST00000451728.6;ENST00000441626.6;ENST00000502372.1	292.031	210.964	200.353	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SIPA1L2_LS0033	chr1:232515608|232533490:-	SIPA1L2	signal induced proliferation associated 1 like 2	protein coding gene	no	.	2.655	1.960	0.000	0.162(1552)	0.241(169)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CUL9_LS045	chr6:43213294|43213484:+	CUL9	cullin 9	protein coding gene	no	ENST00000504485.5	0.237	0.136	1.393	0.463(4433)	0.442(310)	0.681(11842)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RPSAP61_UP_LS0003	chrX:44698859|44703490:+	RPSAP61	ribosomal protein SA pseudogene 61	pseudogene	no	.	1.824	0.733	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
ANKS6_LS015	chr9:98768250|98770896:-	ANKS6	ankyrin repeat and sterile alpha motif domain containing 6	protein coding gene	no	ENST00000444472.5;ENST00000375019.6;ENST00000634393.1;ENST00000353234.4	12.956	8.315	9.033	0.928(8890)	0.907(637)	0.954(16579)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL022238.4_LS0069	chr22:40409525|40409688:+	AL022238.4	-	protein coding gene	no	.	7.926	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SLC13A4_LS009	chr7:135695487|135699364:-	SLC13A4	solute carrier family 13 member 4	protein coding gene	no	ENST00000354042.8;ENST00000471405.5	5.938	4.011	1.317	0.057(542)	0.075(53)	0.396(6889)	non tumor-specific	nAS	yes
UN_TRAPPC10_LS0048	chr21:44089535|44089833:+	TRAPPC10	trafficking protein particle complex 10	protein coding gene	no	.	2.098	0.985	0.000	0.002(17)	0.01(7)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ZSWIM2_LS008	chr2:186847795|186848695:-	ZSWIM2	zinc finger SWIM-type containing 2	protein coding gene	no	ENST00000419862.1	0.060	0.000	0.743	0.001(5)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_API5_LS0016	chr11:43327224|43327789:+	API5	apoptosis inhibitor 5	protein coding gene	no	.	3.842	0.765	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
UN_HOOK2_LS0034	chr19:12774897|12775219:-	HOOK2	hook microtubule tethering protein 2	protein coding gene	no	.	1.735	0.710	0.000	0.103(990)	0.046(32)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_MLIP_LS0017	chr6:53995838|53996975:+	MLIP	muscular LMNA interacting protein	protein coding gene	no	.	1.886	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
CERS4_LS030	chr19:8225093|8251076:+	CERS4	ceramide synthase 4	protein coding gene	no	.;.	4.336	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SMO_LS0005	chr7:129202736|129203384:+	SMO	spermine oxidase	protein coding gene	yes	.	2.413	0.386	0.000	0.032(303)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LCN12_LS014	chr9:136953779|136954724:+	LCN12	lipocalin 12	protein coding gene	no	.;.	4.392	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GFAP_LS015	chr17:44908149|44910615:-	GFAP	glial fibrillary acidic protein	protein coding gene	no	ENST00000639277.1;ENST00000588735.2;ENST00000638304.1;ENST00000639369.1;ENST00000638400.1;ENST00000586125.2;ENST00000638618.1;ENST00000585543.6;ENST00000588640.5;ENST00000639277.1;ENST00000588735.2;ENST00000638304.1;ENST00000639369.1;ENST00000638400.1;ENST00000586125.2;ENST00000638618.1;ENST00000585543.6;ENST00000588640.5	296.236	49.128	5.225	0.382(3663)	0.494(347)	0.851(14795)	non tumor-specific	alt_3prime;exon_skip	yes
CYBA_LS005	chr16:88645429|88646116:-	CYBA	cytochrome b-245 alpha chain	protein coding gene	no	ENST00000567174.5	0.049	0.776	1.021	0.556(5329)	0.513(360)	0.443(7698)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TBX18_LS003	chr6:84737409|84738497:-	TBX18	T-box transcription factor 18	protein coding gene	no	ENST00000369663.9	6.198	1.824	4.931	0.315(3018)	0.259(182)	0.76(13217)	non tumor-specific	alt_3prime	yes
UN_SOCS2-AS1_LS0011	chr12:93545398|93565613:-	SOCS2-AS1	SOCS2 antisense RNA 1	lncRNA gene	no	.	3.202	0.618	0.000	0.037(356)	0.054(38)	0(0)	non tumor-specific	nAS	no
UN_POLR2A_LS0088	chr17:7513056|7513207:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	7.721	7.846	0.000	0.135(1293)	0.128(90)	0(0)	non tumor-specific	nAS	no
SYNGAP1-AS1_LS001	chr6:33437481|33446606:-	SYNGAP1-AS1	SYNGAP1 antisense RNA 1	lncRNA gene	no	ENST00000630418.1	0.189	0.084	0.752	0.119(1137)	0.088(62)	0.181(3142)	non tumor-specific	nAS	yes
FAM81A_LS007	chr15:59438630|59458550:+	FAM81A	family with sequence similarity 81 member A	protein coding gene	no	ENST00000560087.5;ENST00000560074.5	0.056	0.048	0.976	0.045(427)	0.103(72)	0.045(790)	non tumor-specific	alt_5prime	yes
UN_FAM45BP_LS0002	chrX:130495410|130495685:+	FAM45BP	DENND10 pseudogene 1	pseudogene	no	.	0.543	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
MTCH2_LS007	chr11:47629046|47630555:-	MTCH2	mitochondrial carrier 2	protein coding gene	no	ENST00000302503.7;ENST00000525649.5;ENST00000530428.1	233.059	144.863	81.945	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPS6KC1_LS0053	chr1:213176492|213212289:+	RPS6KC1	ribosomal protein S6 kinase C1	protein coding gene	no	.	2.140	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FCGBP_LS0016	chr19:39866911|39866939:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	18.584	21.238	0.000	0.011(107)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_PRDM2_LS0046	chr1:13774249|13778418:+	PRDM2	PR/SET domain 2	protein coding gene	yes	.	1.505	0.085	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COPB2_LS0009	chr3:139359104|139359270:-	COPB2	COPI coat complex subunit beta 2	protein coding gene	no	.	21.431	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CPEB1_LS014	chr15:82571532|82572996:-	CPEB1	cytoplasmic polyadenylation element binding protein 1	protein coding gene	no	ENST00000616959.4	0.002	0.014	0.923	0.012(116)	0.026(18)	0.086(1500)	non tumor-specific	nAS	yes
UN_CFAP53_LS0010	chr18:50251784|50257023:-	CFAP53	cilia and flagella associated protein 53	protein coding gene	no	.	3.281	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NIPA1_LS0035	chr15:22814153|22814387:+	NIPA1	NIPA magnesium transporter 1	protein coding gene	no	.	1.768	0.467	0.000	0.011(101)	0.014(10)	0(0)	non tumor-specific	nAS	no
ROBO2_LS028	chr3:77602491|77602935:+	ROBO2	roundabout guidance receptor 2	protein coding gene	no	ENST00000471893.1	0.503	1.500	3.701	0.051(490)	0.013(9)	0.125(2166)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IGKV2OR2-7D_UP_LS0004	chr2:97354918|97386066:-	IGKV2OR2-7D	immunoglobulin kappa variable 2/OR2-7D (pseudogene)	no	no	.	3.682	0.782	0.000	0.015(147)	0.016(11)	0(0)	non tumor-specific	nAS	no
AL390726.3_LS002	chr9:38543055|38568007:-	AL390726.3	-	lncRNA gene	no	ENST00000567428.2	0.059	0.005	0.810	0.003(26)	0.006(4)	0.002(31)	non tumor-specific	nAS	yes
IKBKB_LS023	chr8:42316904|42317710:+	IKBKB	inhibitor of nuclear factor kappa B kinase subunit beta	protein coding gene	no	ENST00000523517.5;ENST00000648136.1	0.267	0.366	4.168	0.781(7478)	0.792(556)	0.925(16072)	non tumor-specific	alt_3prime;exon_skip	yes
UROS_LS029	chr10:125798145|125807413:-	UROS	uroporphyrinogen III synthase	protein coding gene	no	ENST00000368797.9;ENST00000649619.1;ENST00000368786.5;ENST00000465577.6;ENST00000650587.1;ENST00000650185.1;ENST00000462490.5;ENST00000648119.1;ENST00000420761.5;ENST00000649275.1;ENST00000649450.1;ENST00000368797.9;ENST00000649619.1;ENST00000368786.5;ENST00000465577.6;ENST00000650587.1;ENST00000650185.1;ENST00000462490.5;ENST00000648119.1;ENST00000420761.5;ENST00000649275.1;ENST00000649450.1;ENST00000368797.9;ENST00000649619.1;ENST00000368786.5;ENST00000465577.6;ENST00000650587.1;ENST00000650185.1;ENST00000462490.5;ENST00000648119.1;ENST00000420761.5;ENST00000649275.1;ENST00000649450.1	76.110	53.949	70.675	0.996(9538)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
GTF3A_LS024	chr13:27435034|27435133:+	GTF3A	general transcription factor IIIA	protein coding gene	no	ENST00000381140.8;ENST00000419181.5;ENST00000640289.1;ENST00000470606.5;ENST00000482655.2	407.161	183.033	243.855	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PIM2_LS003	chrX:48915392|48917781:-	PIM2	Pim-2 proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000376509.4	53.436	17.914	6.943	0.983(9422)	0.99(695)	0.966(16792)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_KIAA1217_LS0049	chr10:24315296|24380869:+	KIAA1217	KIAA1217	protein coding gene	no	.	2.893	0.221	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
RRBP1_LS028	chr20:17633613|17635546:-	RRBP1	ribosome binding protein 1	protein coding gene	no	ENST00000610403.4;ENST00000246043.8;ENST00000377813.5;ENST00000377807.6;ENST00000360807.8;ENST00000455029.3;ENST00000610403.4;ENST00000246043.8;ENST00000377813.5;ENST00000377807.6;ENST00000360807.8;ENST00000455029.3	260.611	166.782	80.411	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FCRL1_LS006	chr1:157797132|157797868:-	FCRL1	Fc receptor like 1	protein coding gene	no	ENST00000368175.7;ENST00000368176.7	2.307	1.965	1.922	0.066(630)	0.085(60)	0.223(3869)	non tumor-specific	alt_3prime;mutex_exons	yes
CDHR2_LS021	chr5:176581582|176584190:+	CDHR2	cadherin related family member 2	protein coding gene	no	ENST00000510636.5;ENST00000261944.9;ENST00000506348.1	8.775	14.488	1.367	0.223(2133)	0.333(234)	0.257(4463)	non tumor-specific	alt_3prime;exon_skip	yes
MCM3_LS003	chr6:52265385|52266075:-	MCM3	minichromosome maintenance complex component 3	protein coding gene	no	ENST00000421471.1	0.670	0.198	2.406	0.871(8349)	0.726(510)	0.831(14442)	non tumor-specific	exon_skip	yes
DEGS1_LS001	chr1:224175947|224189577:+	DEGS1	delta 4-desaturase, sphingolipid 1	protein coding gene	no	ENST00000415210.5	0.283	0.149	1.060	0.753(7215)	0.779(547)	0.149(2597)	non tumor-specific	nAS	yes
AL358777.1_LS003	chr6:10685980|10686076:+	AL358777.1	-	lncRNA gene	no	ENST00000649568.1	2.737	0.301	0.000	0.028(273)	0.023(16)	0(0)	non tumor-specific	nAS	yes
UN_TEC_LS0054	chr4:48228659|48264436:-	TEC	tec protein tyrosine kinase	protein coding gene	yes	.	1.789	0.040	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IGSF1_LS0033	chrX:131301438|131332207:-	IGSF1	immunoglobulin superfamily member 1	protein coding gene	no	.	2.246	0.220	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PARP12_LS017	chr7:140037856|140054662:-	PARP12	poly(ADP-ribose) polymerase family member 12	protein coding gene	no	ENST00000491598.5	0.050	0.043	0.654	0.5(4795)	0.459(322)	0.08(1388)	non tumor-specific	exon_skip	yes
AC063944.1_LS002	chr3:107272760|107322620:-	AC063944.1	-	lncRNA gene	no	ENST00000496943.1	0.111	0.007	0.953	0.002(22)	0.004(3)	0(6)	non tumor-specific	nAS	yes
CCDC88A_LS002	chr2:55291164|55291676:-	CCDC88A	coiled-coil domain containing 88A	protein coding gene	no	ENST00000336838.10;ENST00000263630.13;ENST00000643413.1;ENST00000413716.7;ENST00000436346.6;ENST00000643375.1;ENST00000644512.1;ENST00000647401.1;ENST00000444458.5;ENST00000646285.1;ENST00000647396.1;ENST00000644809.1;ENST00000642563.1;ENST00000643265.1;ENST00000645969.1;ENST00000644415.1;ENST00000645311.1;ENST00000646796.1;ENST00000643873.1;ENST00000647291.1;ENST00000644456.1;ENST00000645450.1	19.694	8.501	13.844	0.872(8353)	0.915(642)	0.973(16918)	non tumor-specific	alt_3prime;intron_retention	yes
UN_FCAMR_LS0002	chr1:206958671|206959679:-	FCAMR	Fc fragment of IgA and IgM receptor	protein coding gene	no	.	4.503	0.695	0.000	0.014(138)	0.033(23)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_TMEM143_LS0009	chr19:48343162|48343253:-	TMEM143	transmembrane protein 143	protein coding gene	no	.	1.629	0.322	0.000	0.032(302)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
CEP131_LS012	chr17:81192392|81192476:-	CEP131	centrosomal protein 131	protein coding gene	no	ENST00000374782.7;ENST00000269392.8;ENST00000570817.5;ENST00000573053.5;ENST00000450824.6;ENST00000575907.5	15.855	4.553	16.384	0.98(9392)	0.932(654)	0.978(17001)	non tumor-specific	exon_skip	yes
MANEA_LS004	chr6:95590173|95596737:+	MANEA	mannosidase endo-alpha	protein coding gene	no	ENST00000474553.1	0.934	0.124	0.699	0.019(182)	0.011(8)	0.163(2837)	non tumor-specific	exon_skip	yes
MIER2_LS004	chr19:308665|308822:-	MIER2	MIER family member 2	protein coding gene	no	ENST00000619835.4	0.192	0.164	2.614	0.868(8317)	0.809(568)	0.909(15808)	non tumor-specific	alt_5prime	yes
HLA-A_LS021	chr6:29944616|29945059:+	HLA-A	major histocompatibility complex, class I, A	protein coding gene	no	ENST00000396634.5;ENST00000376809.9;ENST00000479320.5	2008.097	1092.628	971.799	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_NINL_LS0020	chr20:25465051|25467389:-	NINL	ninein like	protein coding gene	yes	.	1.968	0.112	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_ACTB_LS0120	chr7:5527582|5527617:+	ACTB	actin beta	protein coding gene	no	.	3.507	0.096	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TYK2_LS0079	chr19:10369874|10378214:-	TYK2	tyrosine kinase 2	protein coding gene	no	.	1.852	0.005	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ALKBH4_UP_LS0031	chr7:102476270|102566997:-	ALKBH4	alkB homolog 4, lysine demethylase	protein coding gene	no	.	33.338	0.755	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEK3_LS021	chr13:52153992|52156075:-	NEK3	NIMA related kinase 3	protein coding gene	no	ENST00000551355.5;ENST00000629912.1;ENST00000551355.5;ENST00000629912.1;ENST00000551355.5;ENST00000629912.1	0.213	0.116	0.767	0.524(5023)	0.504(354)	0.296(5149)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NSUN7_LS0016	chr4:40776259|40786548:+	NSUN7	NOP2/Sun RNA methyltransferase family member 7	protein coding gene	no	.	1.703	0.887	0.000	0.092(878)	0.095(67)	0(0)	non tumor-specific	alt_3prime	no
PHTF1_LS005	chr1:113700949|113704081:-	PHTF1	putative homeodomain transcription factor 1	protein coding gene	no	ENST00000474926.5;ENST00000393357.6;ENST00000369598.5;ENST00000369600.5;ENST00000369604.5;ENST00000481652.1	15.885	7.651	9.728	0.971(9301)	0.974(684)	0.973(16919)	non tumor-specific	exon_skip	yes
FYTTD1_LS003	chr3:197749650|197756426:+	FYTTD1	forty-two-three domain containing 1	protein coding gene	no	ENST00000494309.5	0.067	0.017	0.656	0.213(2042)	0.245(172)	0.039(671)	non tumor-specific	exon_skip	yes
UN_LAMA2_LS0010	chr6:129092446|129183518:-	LAMA2	laminin subunit alpha 2	protein coding gene	no	.	9.373	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC005833.1_LS0010	chr12:4652789|4654292:+	AC005833.1	-	protein coding gene	no	.	2.415	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BCL2L13_LS0008	chr22:17638886|17646096:+	BCL2L13	BCL2 like 13	protein coding gene	no	.	0.327	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PPP2R5A_LS0033	chr1:212345933|212356626:+	PPP2R5A	protein phosphatase 2 regulatory subunit B'alpha	protein coding gene	no	.	2.398	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
PHB_LS009	chr17:49413291|49414242:-	PHB	prohibitin	protein coding gene	yes	ENST00000614445.4;ENST00000419140.6	0.776	0.891	3.225	0.913(8752)	0.905(635)	0.923(16035)	non tumor-specific	exon_skip	yes
UN_TRIM26_LS0027	chr6:30199264|30204656:-	TRIM26	tripartite motif containing 26	protein coding gene	no	.	3.025	0.543	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC00470_LS014	chr18:1353462|1358726:-	LINC00470	long intergenic non-protein coding RNA 470	lncRNA gene	no	ENST00000581212.1	0.278	0.000	0.664	0.002(23)	0(0)	0.006(102)	non tumor-specific	nAS	yes
GSK3A_LS011	chr19:42236716|42236858:-	GSK3A	glycogen synthase kinase 3 alpha	protein coding gene	yes	ENST00000222330.7;ENST00000398249.8;ENST00000453535.1	177.726	116.194	85.557	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
ADAD2_LS003	chr16:84191648|84194442:+	ADAD2	adenosine deaminase domain containing 2	protein coding gene	no	ENST00000315906.9;ENST00000567685.1	2.552	0.251	0.779	0.03(292)	0.024(17)	0.154(2680)	non tumor-specific	exon_skip	yes
UN_MYBBP1A_LS0026	chr17:4540484|4540648:-	MYBBP1A	MYB binding protein 1a	protein coding gene	yes	.	1.495	1.219	0.000	0.002(16)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_DBN1_LS0112	chr5:177468066|177468123:-	DBN1	drebrin 1	protein coding gene	no	.	15.381	1.041	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
LTBP4_LS028	chr19:40613196|40613404:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	ENST00000204005.13;ENST00000308370.11;ENST00000396819.7;ENST00000243562.13;ENST00000546155.5;ENST00000598055.1;ENST00000601032.5;ENST00000612121.4	27.602	59.464	135.440	0.974(9332)	0.997(700)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARID5A_LS0003	chr2:96540677|96547402:+	ARID5A	AT-rich interaction domain 5A	protein coding gene	no	.	3.098	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	exon_skip	no
CD4_LS002	chr12:6789662|6798880:+	CD4	CD4 molecule	protein coding gene	yes	ENST00000535466.5;ENST00000539492.1	0.193	0.036	0.691	0.036(344)	0.044(31)	0.036(620)	non tumor-specific	exon_skip;mutex_exons	yes
USP13_LS020	chr3:179757078|179761112:+	USP13	ubiquitin specific peptidase 13	protein coding gene	no	ENST00000263966.7;ENST00000496897.5	8.185	5.791	4.039	0.858(8221)	0.946(664)	0.89(15463)	non tumor-specific	exon_skip	yes
UN_TNFRSF12A_LS0015	chr16:3021621|3021828:-	TNFRSF12A	TNF receptor superfamily member 12A	protein coding gene	yes	.	0.893	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ACR_LS002	chr22:50739474|50739694:+	ACR	acrosin	protein coding gene	no	ENST00000533930.1;ENST00000216139.9;ENST00000529621.1	2.792	1.234	2.557	0.054(513)	0.083(58)	0.768(13352)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AC005476.2_LS0022	chr14:71310679|71321528:-	AC005476.2	-	lncRNA gene	no	.	1.131	0.132	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL035467.2_LS0002	chr6:71532287|71532934:+	AL035467.2	-	lncRNA gene	no	.	3.051	0.927	0.000	0.004(37)	0.047(33)	0(0)	non tumor-specific	nAS	no
UN_ZNF826P_LS0059	chr19:20409045|20423481:-	ZNF826P	zinc finger protein 826, pseudogene	pseudogene	no	.	4.899	2.369	0.000	0.143(1373)	0.358(251)	0(0)	non tumor-specific	nAS	no
DNAJC11_LS023	chr1:6654287|6667709:-	DNAJC11	DnaJ heat shock protein family (Hsp40) member C11	protein coding gene	yes	ENST00000460594.5	0.053	0.034	0.724	0.374(3584)	0.302(212)	0.239(4155)	non tumor-specific	nAS	yes
UN_LINC01349_UP_LS0005	chr1:100735753|100781675:-	LINC01349	long intergenic non-protein coding RNA 1349	lncRNA gene	no	.	4.300	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LRAT_LS003	chr4:154636396|154728703:+	LRAT	lecithin retinol acyltransferase	protein coding gene	no	ENST00000502525.5;ENST00000499392.1	0.971	0.088	0.856	0.04(387)	0.013(9)	0.125(2174)	non tumor-specific	exon_skip	yes
UN_RGS14_LS0001	chr5:177363124|177365963:+	RGS14	regulator of G protein signaling 14	protein coding gene	no	.	2.040	0.527	0.000	0.049(470)	0.093(65)	0(0)	non tumor-specific	nAS	no
STAG1_LS026	chr3:136472492|136473539:-	STAG1	stromal antigen 1	protein coding gene	no	ENST00000383202.6;ENST00000236698.9;ENST00000434713.6;ENST00000483235.5;ENST00000629124.2;ENST00000487065.5;ENST00000492318.1	13.542	9.978	10.981	0.905(8667)	0.963(676)	0.967(16807)	non tumor-specific	alt_3prime	yes
NOC2L_LS018	chr1:953288|953782:-	NOC2L	NOC2 like nucleolar associated transcriptional repressor	protein coding gene	no	ENST00000327044.6;ENST00000477976.5	102.842	48.417	53.351	0.997(9554)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
ANK1_LS039	chr8:41698121|41699452:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000347528.8;ENST00000289734.12;ENST00000265709.13;ENST00000520299.5	6.140	1.241	1.771	0.163(1564)	0.048(34)	0.543(9443)	non tumor-specific	nAS	yes
DEPDC5_LS007	chr22:31765060|31766585:+	DEPDC5	DEP domain containing 5, GATOR1 subcomplex subunit	protein coding gene	no	ENST00000535622.6;ENST00000645693.1;ENST00000642974.1;ENST00000645711.1;ENST00000644331.1;ENST00000645560.1;ENST00000437411.6;ENST00000643948.1;ENST00000645755.1;ENST00000646755.1;ENST00000382112.8;ENST00000400248.7;ENST00000642771.1;ENST00000646515.1;ENST00000456178.6;ENST00000643751.1;ENST00000646969.1;ENST00000642696.1;ENST00000400242.8;ENST00000645015.1;ENST00000646998.1;ENST00000400246.6;ENST00000645494.1;ENST00000645564.1;ENST00000646465.1;ENST00000643395.1;ENST00000400249.7;ENST00000645967.1;ENST00000382111.6;ENST00000645407.1;ENST00000645785.1;ENST00000642551.1	3.880	2.050	6.114	0.755(7238)	0.853(599)	0.962(16730)	non tumor-specific	exon_skip	yes
SRCIN1_LS028	chr17:38562328|38562827:-	SRCIN1	SRC kinase signaling inhibitor 1	protein coding gene	no	ENST00000617146.4;ENST00000621492.4;ENST00000622190.4;ENST00000622519.4;ENST00000621763.4;ENST00000612431.1	2.057	1.859	3.172	0.363(3482)	0.182(128)	0.619(10768)	non tumor-specific	alt_3prime	yes
PARVA_LS019	chr11:12517711|12518445:+	PARVA	parvin alpha	protein coding gene	no	ENST00000334956.13;ENST00000649199.1	127.144	107.188	90.066	0.982(9409)	0.997(700)	0.958(16655)	non tumor-specific	exon_skip	yes
UN_NLRC5_LS0001	chr16:56989595|56990624:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	.	0.729	0.078	0.000	0.016(150)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
GFM1_LS005	chr3:158646947|158649041:+	GFM1	G elongation factor mitochondrial 1	protein coding gene	no	ENST00000486715.5;ENST00000478576.5;ENST00000478254.5;ENST00000264263.9;ENST00000478251.1	42.023	28.955	18.846	0.976(9351)	0.99(695)	0.974(16928)	non tumor-specific	exon_skip	yes
UN_AC013470.2_LS0004	chr7:12474922|12480934:-	AC013470.2	-	protein coding gene	no	.	2.522	1.072	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	nAS	no
CARM1_LS016	chr19:10919680|10919833:+	CARM1	coactivator associated arginine methyltransferase 1	protein coding gene	no	ENST00000586221.5	0.904	0.994	1.423	0.346(3312)	0.329(231)	0.715(12420)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PARVB_LS029	chr22:44168273|44168602:+	PARVB	parvin beta	protein coding gene	no	ENST00000477438.1	0.095	0.077	0.634	0.641(6146)	0.61(428)	0.014(250)	non tumor-specific	nAS	yes
UN_SPTBN1_LS0114	chr2:54649934|54664619:-	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	.	2.035	0.193	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_INTS10_LS0003	chr8:19824044|19824806:+	INTS10	integrator complex subunit 10	protein coding gene	no	.	15.034	2.279	0.000	0.021(197)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
NFIX_LS012	chr19:13070069|13073047:+	NFIX	nuclear factor I X	protein coding gene	no	ENST00000588680.1	0.015	0.005	0.652	0.362(3472)	0.466(327)	0.048(833)	non tumor-specific	nAS	yes
AC078850.2_LS002	chr4:128599546|128601313:-	AC078850.2	-	lncRNA gene	no	ENST00000509360.1	0.086	0.050	0.686	0.018(169)	0.031(22)	0.013(227)	non tumor-specific	nAS	yes
UN_CFL1_LS0007	chr11:65832444|65832487:-	CFL1	cofilin 1	protein coding gene	no	.	8.344	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA2026_LS0056	chr9:5970012|5988345:-	KIAA2026	KIAA2026	protein coding gene	no	.	1.209	0.184	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZBTB7B_LS0029	chr1:155010418|155010916:+	ZBTB7B	zinc finger and BTB domain containing 7B	protein coding gene	no	.	2.535	1.557	0.000	0.003(33)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_DCPS_LS0040	chr11:126331550|126337671:+	DCPS	decapping enzyme, scavenger	protein coding gene	no	.	4.494	1.892	0.000	0.003(30)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AGBL4_LS012	chr1:49245864|49697313:-	AGBL4	ATP/GTP binding protein like 4	protein coding gene	no	ENST00000371839.5;ENST00000371838.5;ENST00000371836.1	2.501	1.881	1.683	0.145(1391)	0.264(185)	0.317(5508)	non tumor-specific	alt_5prime	yes
UN_TEN1-CDK3_LS0011	chr17:76000174|76000290:-	TEN1-CDK3	TEN1-CDK3 readthrough (NMD candidate)	protein coding gene	no	.	2.057	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
EXOC6_LS020	chr10:92952382|92954630:+	EXOC6	exocyst complex component 6	protein coding gene	no	ENST00000371552.8;ENST00000443748.6;ENST00000260762.10;ENST00000495132.5	16.855	13.789	9.036	0.942(9021)	0.986(692)	0.971(16874)	non tumor-specific	nAS	yes
UN_AL445218.1_LS0004	chr1:95371916|95372403:+	AL445218.1	-	lncRNA gene	no	.	2.899	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
PIGN_LS019	chr18:62101183|62102794:-	PIGN	phosphatidylinositol glycan anchor biosynthesis class N	protein coding gene	no	ENST00000639600.1;ENST00000639372.1;ENST00000640252.1;ENST00000639912.1;ENST00000640876.1;ENST00000357637.10;ENST00000640145.1;ENST00000638977.1;ENST00000640170.1;ENST00000638167.1;ENST00000640540.1;ENST00000639342.1;ENST00000638435.1;ENST00000639681.1;ENST00000400334.7;ENST00000639902.1;ENST00000639758.1;ENST00000638936.1;ENST00000638858.1;ENST00000638369.1;ENST00000640593.1;ENST00000587942.1;ENST00000640268.1;ENST00000640682.1;ENST00000638904.1;ENST00000638424.1;ENST00000640050.1;ENST00000638183.1;ENST00000639174.1	11.416	9.052	7.184	0.943(9035)	0.976(685)	0.964(16760)	non tumor-specific	nAS	yes
UN_MIR4650-1_UP_LS0013	chr7:67229950|67292463:-	MIR4650-1	microRNA 4650-1	small non-coding RNA gene	no	.	1.188	0.514	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	nAS	no
MAX_LS011	chr14:65077428|65077913:-	MAX	MYC associated factor X	protein coding gene	yes	ENST00000618858.4;ENST00000394606.6;ENST00000553928.5;ENST00000557277.5;ENST00000556979.5;ENST00000555667.5;ENST00000618858.4;ENST00000394606.6;ENST00000553928.5;ENST00000557277.5;ENST00000556979.5;ENST00000555667.5	0.303	1.227	5.987	0.93(8908)	0.966(678)	0.956(16620)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CCDC34_LS0002	chr11:27338239|27338881:-	CCDC34	coiled-coil domain containing 34	protein coding gene	no	.	1.543	0.176	0.000	0.01(92)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_AC006453.4_UP_LS0391	chr2:89297310|89319672:+	AC006453.4	-	pseudogene	no	.	42.949	11.721	0.000	0.006(60)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_NCL_LS0132	chr2:231461822|231461988:-	NCL	nucleolin	protein coding gene	no	.	55.950	0.027	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_MGAT1_LS0011	chr5:180790728|180790863:+	MGAT1	monoacylglycerol O-acyltransferase 1	protein coding gene	no	.	2.826	0.049	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC44A4_LS037	chr6:31876129|31877034:-	SLC44A4	solute carrier family 44 member 4	protein coding gene	no	ENST00000229729.10;ENST00000544672.5;ENST00000375562.8;ENST00000644409.1;ENST00000414427.1;ENST00000465707.5;ENST00000462671.1	56.066	90.098	2.514	0.62(5938)	0.845(593)	0.451(7847)	non tumor-specific	alt_3prime;exon_skip	yes
SPIDR_LS004	chr8:47260991|47279864:+	SPIDR	scaffold protein involved in DNA repair	protein coding gene	no	ENST00000523814.5	0.020	0.039	0.635	0.64(6133)	0.678(476)	0.059(1031)	non tumor-specific	alt_3prime;exon_skip	yes
SPOUT1_LS006	chr9:128824174|128824771:-	SPOUT1	SPOUT domain containing methyltransferase 1	protein coding gene	no	ENST00000361256.9;ENST00000467582.1;ENST00000480366.1	45.155	22.184	29.146	0.994(9524)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
ITGB6_LS009	chr2:160138199|160141982:-	ITGB6	integrin subunit beta 6	protein coding gene	no	ENST00000283249.6;ENST00000620391.4;ENST00000409583.5;ENST00000428609.6;ENST00000409967.6;ENST00000409872.1	25.357	35.395	4.504	0.651(6242)	0.83(583)	0.391(6793)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPS24_LS0018	chr10:78035720|78037165:+	RPS24	ribosomal protein S24	protein coding gene	no	.	405.523	52.251	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
KLHL13_LS015	chrX:118028497|118116508:-	KLHL13	kelch like family member 13	protein coding gene	no	ENST00000540167.5	0.401	0.340	0.752	0.29(2776)	0.462(324)	0.229(3981)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ADAMTS2_LS0037	chr5:179285186|179288610:+	ADAMTS2	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein coding gene	no	.	2.406	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CREB3_LS002	chr9:35733143|35733215:+	CREB3	cAMP responsive element binding protein 3 like 4	protein coding gene	no	ENST00000353704.2	84.073	62.094	97.498	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_FN1_LS0263	chr2:215404635|215406488:+	FN1	fibronectin 1	protein coding gene	no	.	2.972	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PAK4_LS018	chr19:39173106|39173576:+	PAK4	p21 (RAC1) activated kinase 4	protein coding gene	no	ENST00000321944.8	0.185	0.244	0.721	0.815(7810)	0.835(586)	0.222(3857)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PDIA3_LS0006	chr15:43746481|43746546:-	PDIA3	protein disulfide isomerase family A member 3	protein coding gene	no	.	7.175	1.423	0.000	0.008(75)	0.006(4)	0(0)	non tumor-specific	nAS	no
DMKN_LS065	chr19:35507511|35510184:-	DMKN	dermokine	protein coding gene	no	.;.	6.304	0.381	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CLUH_LS0091	chr17:2704564|2706634:-	CLUH	clustered mitochondria homolog	protein coding gene	no	.	1.030	0.052	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNM1_LS066	chr9:128253137|128254006:+	DNM1	dynamin 1	protein coding gene	no	ENST00000625457.1;ENST00000630850.1	2.785	9.065	3.038	0.646(6190)	0.568(399)	0.804(13970)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CDK4_LS0011	chr12:57748617|57749454:-	CDK4	cyclin dependent kinase 4	protein coding gene	yes	.	34.957	0.114	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AGBL4_LS0018	chr1:48728043|48734045:-	AGBL4	ATP/GTP binding protein like 4	protein coding gene	no	.	1.126	0.629	0.000	0.013(120)	0.023(16)	0(0)	non tumor-specific	nAS	no
KIDINS220_LS001	chr2:8725599|8726887:-	KIDINS220	kinase D interacting substrate 220	protein coding gene	no	ENST00000569008.2;ENST00000496383.5	0.431	0.960	1.742	0.334(3196)	0.537(377)	0.719(12502)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_VMP1_LS0019	chr17:59808289|59808796:+	VMP1	vacuole membrane protein 1	protein coding gene	no	.	2.833	0.183	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_FAM32A_UP_LS0006	chr19:16182911|16185344:+	FAM32A	family with sequence similarity 32 member A	protein coding gene	no	.	0.961	0.148	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PDZD11_LS0014	chrX:70289593|70289823:-	PDZD11	PDZ domain containing 11	protein coding gene	no	.	4.688	0.004	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC131097.1_UP_LS0163	chr2:241807872|241808037:-	AC131097.1	-	lncRNA gene	no	.	2.470	0.793	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZSWIM7_LS021	chr17:15987368|15993757:-	ZSWIM7	zinc finger SWIM-type containing 7	protein coding gene	no	ENST00000476496.5;ENST00000490395.5;ENST00000399277.5;ENST00000399280.6;ENST00000497719.5;ENST00000486655.5;ENST00000474716.5;ENST00000472495.5;ENST00000460315.5;ENST00000491631.5;ENST00000495825.6;ENST00000486706.6;ENST00000460252.5;ENST00000475498.5	37.871	25.312	38.124	0.995(9534)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02490_UP_LS0002	chr15:52916439|52971403:+	LINC02490	long intergenic non-protein coding RNA 2490	lncRNA gene	no	.	3.421	0.183	0.000	0.016(155)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC022784.1_LS0001	chr8:9151916|9189348:+	AC022784.1	-	lncRNA gene	no	.	0.320	0.040	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SETDB1_LS008	chr1:150927974|150929998:+	SETDB1	SET domain bifurcated histone lysine methyltransferase 1	protein coding gene	yes	ENST00000368964.3	0.043	0.109	1.069	0.886(8492)	0.9(632)	0.595(10338)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MYH7B_LS013	chr20:34985129|34986100:+	MYH7B	myosin heavy chain 7B	protein coding gene	no	ENST00000262873.11;ENST00000618182.4	7.593	1.173	1.836	0.039(378)	0.038(27)	0.601(10455)	non tumor-specific	exon_skip;intron_retention	yes
ADAMTS7P3_LS006	chr15:77984598|77985102:+	ADAMTS7P3	ADAMTS7 pseudogene 3	pseudogene	no	ENST00000566116.1	0.891	0.000	0.645	0.001(11)	0(0)	0.044(767)	non tumor-specific	nAS	yes
ZNF35_LS007	chr3:44651259|44652557:+	ZNF35	zinc finger protein 35	protein coding gene	no	ENST00000396056.6;ENST00000432115.6;ENST00000415571.6	3.467	1.885	2.088	0.819(7849)	0.843(592)	0.851(14787)	non tumor-specific	exon_skip	yes
UN_GLI2_UP_LS0003	chr2:120723245|120724208:+	GLI2	GLI family zinc finger 2	protein coding gene	yes	.	4.111	0.320	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01889_UP_LS0004	chr2:124993506|125017979:+	LINC01889	long intergenic non-protein coding RNA 1889	lncRNA gene	no	.	2.004	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
EWSR1_LS046	chr22:29299331|29299599:+	EWSR1	EWS RNA binding protein 1	protein coding gene	yes	ENST00000332050.10;ENST00000629659.2;ENST00000397938.6;ENST00000406548.5;ENST00000331029.11;ENST00000414183.6;ENST00000332035.10;ENST00000479135.5;ENST00000469669.5;ENST00000332050.10;ENST00000629659.2;ENST00000397938.6;ENST00000406548.5;ENST00000331029.11;ENST00000414183.6;ENST00000332035.10;ENST00000479135.5;ENST00000469669.5	550.379	258.208	299.476	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TXNRD1_LS009	chr12:104287109|104311290:+	TXNRD1	thioredoxin reductase 1	protein coding gene	no	ENST00000526580.5;ENST00000526580.5	0.613	0.408	3.744	0.798(7641)	0.849(596)	0.891(15485)	non tumor-specific	alt_5prime;exon_skip	yes
U95743.1_LS002	chr16:13730436|13777720:-	U95743.1	-	lncRNA gene	no	ENST00000576944.1	0.360	0.006	0.856	0.023(219)	0.003(2)	0.002(43)	non tumor-specific	nAS	yes
PLEKHG4_LS003	chr16:67278790|67279876:+	PLEKHG4	pleckstrin homology and RhoGEF domain containing G4	protein coding gene	no	ENST00000562144.5;ENST00000565899.1	0.464	0.241	0.910	0.157(1501)	0.071(50)	0.227(3944)	non tumor-specific	alt_5prime;intron_retention	yes
UN_SLK_LS0005	chr10:104008356|104009825:+	SLK	STE20 like kinase	protein coding gene	no	.	7.398	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
ANXA6_LS027	chr5:151133187|151137275:-	ANXA6	annexin A6	protein coding gene	no	ENST00000517677.5	0.393	0.333	0.595	0.023(221)	0.024(17)	0.075(1295)	non tumor-specific	nAS	yes
AC117465.1_LS001	chr3:177337932|177338427:-	AC117465.1	-	lncRNA gene	no	ENST00000457125.1	0.813	0.037	0.647	0.01(99)	0.001(1)	0.005(87)	non tumor-specific	nAS	yes
UN_NCSTN_LS0042	chr1:160358600|160358655:-	NCSTN	nicastrin	protein coding gene	no	.	6.276	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR3937_UP_LS0016	chrX:38870844|39131811:+	MIR3937	microRNA 3937	small non-coding RNA gene	no	.	1.769	0.326	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_LINC02006_LS0004	chr3:153386016|153420401:-	LINC02006	long intergenic non-protein coding RNA 2006	lncRNA gene	no	.	2.154	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPC24_LS0013	chr19:11132446|11132923:+	SPC24	SPC24 component of NDC80 kinetochore complex	protein coding gene	no	.	41.082	15.756	0.000	0.004(42)	0.006(4)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AC073107.1_LS0016	chr7:65695946|65726771:-	AC073107.1	-	pseudogene	no	.	2.702	1.320	0.000	0.177(1700)	0.425(298)	0(0)	non tumor-specific	nAS	no
MCTP2_LS009	chr15:94298730|94314282:+	MCTP2	multiple C2 and transmembrane domain containing 2	protein coding gene	no	ENST00000543482.5;ENST00000561608.5;ENST00000556363.5;ENST00000456504.5;ENST00000451018.7;ENST00000357742.8	4.526	2.056	2.348	0.61(5849)	0.752(528)	0.642(11157)	non tumor-specific	exon_skip	yes
SPATS2_LS036	chr12:49512905|49514555:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000549412.5	0.140	0.321	1.788	0.638(6113)	0.62(435)	0.778(13525)	non tumor-specific	exon_skip	yes
UN_CABIN1_LS0171	chr22:24176340|24177504:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	5.950	0.404	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_RGPD3_UP_LS0006	chr2:106475675|106698469:-	RGPD3	RANBP2 like and GRIP domain containing 3	protein coding gene	no	.	5.261	1.683	0.000	0.008(80)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL627309.4_UP_LS0023	chr1:138941|139457:+	AL627309.4	-	lncRNA gene	no	.	3.267	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C1QA_LS0051	chr1:22638886|22639057:-	C1QA	complement C1q A chain	protein coding gene	no	.	4.022	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA2026_LS0030	chr9:5931684|5933751:-	KIAA2026	KIAA2026	protein coding gene	no	.	1.444	0.704	0.000	0.008(75)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_C7orf55-LUC7L2_LS0037	chr7:139363452|139365212:+	C7orf55-LUC7L2	FMC1-LUC7L2 readthrough	protein coding gene	no	.	2.836	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AOAH_LS0010	chr7:36521056|36522039:-	AOAH	acyloxyacyl hydrolase	protein coding gene	no	.	1.718	0.064	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
BLK_LS001	chr8:11494591|11509150:+	BLK	BLK proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000525389.1	0.022	0.002	0.589	0.068(650)	0.101(71)	0.009(154)	non tumor-specific	nAS	yes
ADGRL3_LS005	chr4:61497348|61517315:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000509896.5;ENST00000511324.5;ENST00000507164.5;ENST00000508693.5;ENST00000507625.5;ENST00000506720.5;ENST00000506746.5	1.688	1.127	1.380	0.119(1138)	0.165(116)	0.418(7258)	non tumor-specific	exon_skip	yes
NPRL3_LS018	chr16:119255|138150:-	NPRL3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	ENST00000483663.5	0.083	0.054	1.401	0.828(7935)	0.776(545)	0.726(12628)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC007364.1_LS0018	chr2:149827169|149847909:+	AC007364.1	-	lncRNA gene	no	.	2.337	0.615	0.000	0.03(291)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_AC099850.2_LS0053	chr17:59207120|59208309:-	AC099850.2	-	protein coding gene	no	.	0.969	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
DLG5_LS044	chr10:77847213|77853354:-	DLG5	discs large MAGUK scaffold protein 5	protein coding gene	no	.;.	1.273	0.216	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_EXT1_LS0013	chr8:117822597|117827709:-	EXT1	exostosin glycosyltransferase 1	protein coding gene	yes	.	1.576	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ERICH1_LS0071	chr8:668792|670456:-	ERICH1	glutamate rich 1	protein coding gene	no	.	2.915	0.282	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
NUP107_LS038	chr12:68733612|68734708:+	NUP107	nucleoporin 107	protein coding gene	no	ENST00000229179.8;ENST00000378905.6;ENST00000535718.5;ENST00000539906.5	80.148	27.776	41.442	0.994(9521)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
TXNRD3_LS004	chr3:126608633|126609141:-	TXNRD3	thioredoxin reductase 3	protein coding gene	no	ENST00000518740.5	0.097	0.090	0.907	0.265(2543)	0.214(150)	0.401(6971)	non tumor-specific	exon_skip	yes
LRRC39_LS006	chr1:100152524|100155051:-	LRRC39	leucine rich repeat containing 39	protein coding gene	no	ENST00000620882.4;ENST00000342895.7;ENST00000370137.5;ENST00000370138.1	6.408	2.093	4.836	0.301(2888)	0.154(108)	0.929(16146)	non tumor-specific	nAS	yes
SUDS3_LS006	chr12:118384067|118386114:+	SUDS3	SDS3 homolog, SIN3A corepressor complex component	protein coding gene	no	ENST00000543473.1	36.988	25.819	20.868	0.976(9352)	0.991(696)	0.978(17004)	non tumor-specific	exon_skip	yes
FLAD1_LS023	chr1:154990528|154992565:+	FLAD1	flavin adenine dinucleotide synthetase 1	protein coding gene	no	ENST00000477609.5	0.398	0.249	2.947	0.814(7803)	0.652(458)	0.915(15911)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_TYMS_LS0013	chr18:666396|670077:-	TYMS	thymidylate synthetase	protein coding gene	yes	.	4.602	1.263	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC099552.1_LS002	chr7:155197374|155198269:-	AC099552.1	-	lncRNA gene	no	ENST00000404289.1	1.121	0.127	0.633	0.006(59)	0.031(22)	0.008(143)	non tumor-specific	alt_3prime	yes
UN_MCCC2_LS0066	chr5:71654282|71657716:-	MCCC2	methylcrotonoyl-CoA carboxylase 2	protein coding gene	no	.	2.279	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ASPH_LS006	chr8:61518123|61525977:-	ASPH	aspartate beta-hydroxylase	protein coding gene	no	ENST00000379454.8;ENST00000541428.5;ENST00000521909.1	41.338	36.009	23.526	0.974(9334)	0.994(698)	0.975(16943)	non tumor-specific	exon_skip	yes
SRPK3_LS011	chrX:153781613|153781743:+	SRPK3	SRSF protein kinase 3	protein coding gene	no	ENST00000489426.5;ENST00000393786.7;ENST00000370104.5;ENST00000370108.7;ENST00000370101.7;ENST00000430541.5;ENST00000370100.5	1.722	1.413	4.789	0.364(3484)	0.325(228)	0.771(13393)	non tumor-specific	intron_retention	yes
UN_CDH22_LS0007	chr20:46206239|46206775:+	CDH22	cadherin 22	protein coding gene	no	.	1.675	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
HADHB_LS008	chr2:26254474|26263380:+	HADHB	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein coding gene	no	ENST00000448743.5;ENST00000537713.5;ENST00000317799.9;ENST00000405867.7;ENST00000425035.5;ENST00000412805.5;ENST00000448743.5;ENST00000537713.5;ENST00000317799.9;ENST00000405867.7;ENST00000425035.5;ENST00000412805.5	178.110	177.720	106.658	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WDR4_LS0118	chr21:42849697|42850041:-	WDR4	WD repeat domain 4	protein coding gene	no	.	1.371	0.346	0.000	0.038(362)	0.028(20)	0(0)	non tumor-specific	intron_retention	no
FUT8_LS026	chr14:65669480|65721775:+	FUT8	fucosyltransferase 8	protein coding gene	no	ENST00000360689.9;ENST00000394586.6;ENST00000557164.5;ENST00000358307.6;ENST00000557536.5;ENST00000554765.1	41.840	22.025	14.857	0.961(9208)	0.974(684)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HAUS6_LS0019	chr9:19087156|19093171:-	HAUS6	HAUS augmin like complex subunit 6	protein coding gene	no	.	1.214	0.046	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_NOMO2_LS0121	chr16:18424372|18506897:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	51.820	10.055	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	nAS	no
NBPF10_LS033	chr1:146090932|146091642:-	NBPF10	NBPF member 10	protein coding gene	no	ENST00000583866.8;ENST00000617010.2	0.785	0.098	0.616	0.007(70)	0.01(7)	0.008(133)	non tumor-specific	nAS	yes
SFXN2_LS026	chr10:102727791|102728431:+	SFXN2	sideroflexin 2	protein coding gene	no	ENST00000602544.5	0.187	0.143	1.060	0.254(2432)	0.221(155)	0.46(8002)	non tumor-specific	exon_skip	yes
AL392172.1_LS008	chr1:222815078|222835119:+	AL392172.1	-	lncRNA gene	no	ENST00000450784.5;ENST00000426045.5;ENST00000444858.5;ENST00000441676.5	0.230	0.115	1.317	0.852(8166)	0.875(614)	0.659(11450)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
GRM2_LS008	chr3:51714121|51715062:+	GRM2	glutamate metabotropic receptor 2	protein coding gene	no	ENST00000296479.9	0.477	0.000	0.711	0(2)	0(0)	0.021(364)	non tumor-specific	intron_retention	yes
LRGUK_LS020	chr7:134249076|134258257:+	LRGUK	leucine rich repeats and guanylate kinase domain containing	protein coding gene	no	ENST00000285928.2	3.763	1.368	1.202	0.157(1502)	0.091(64)	0.504(8757)	non tumor-specific	exon_skip	yes
UN_AC126471.1_UP_LS0004	chr12:85353265|85354992:+	AC126471.1	-	pseudogene	no	.	3.816	0.063	0.000	0.031(297)	0.003(2)	0(0)	non tumor-specific	nAS	no
BX276092.7_LS004	chrX:71664269|71664810:-	BX276092.7	-	pseudogene	no	ENST00000422194.6;ENST00000637198.1	17.878	0.510	1.348	0.055(526)	0.01(7)	0.113(1968)	non tumor-specific	nAS	yes
ARL2-SNX15_LS002	chr11:65018474|65018571:+	ARL2-SNX15	ARL2-SNX15 readthrough (NMD candidate)	protein coding gene	no	ENST00000301886.3	359.896	231.477	292.044	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SIRPB2_LS005	chr20:1473870|1477338:-	SIRPB2	signal regulatory protein gamma	protein coding gene	no	ENST00000481731.5;ENST00000486775.5	0.072	0.042	1.532	0.051(486)	0.038(27)	0.513(8909)	non tumor-specific	nAS	yes
UN_AC016773.1_UP_LS0001	chr4:1549134|1553631:+	AC016773.1	-	lncRNA gene	no	.	2.996	0.349	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	nAS	no
OFD1_LS027	chrX:13756767|13757660:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	ENST00000340096.10;ENST00000380567.5;ENST00000490265.5;ENST00000380550.6;ENST00000398395.7	25.173	13.312	26.400	0.985(9436)	0.993(697)	0.979(17017)	non tumor-specific	exon_skip	yes
RPS26_LS001	chr12:56041396|56041811:+	RPS26	ribosomal protein S26	protein coding gene	no	ENST00000356464.10	33.672	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_PLBD2_LS0316	chr12:113390633|113390695:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	3.672	0.404	0.000	0.007(68)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ROCK2_LS0011	chr2:11183440|11192130:-	ROCK2	Rho associated coiled-coil containing protein kinase 2	protein coding gene	no	.	4.256	0.538	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DPP9_LS027	chr19:4704304|4705858:-	DPP9	dipeptidyl peptidase 9	protein coding gene	no	ENST00000594671.5;ENST00000262960.13;ENST00000597145.5;ENST00000598800.5;ENST00000597849.5;ENST00000601764.5	43.995	23.351	32.013	0.983(9420)	0.994(698)	0.979(17016)	non tumor-specific	alt_3prime	yes
SUPT5H_LS014	chr19:39457740|39458294:+	SUPT5H	SPT5 homolog, DSIF elongation factor subunit	protein coding gene	no	ENST00000599117.5;ENST00000432763.6;ENST00000598725.5;ENST00000598459.5;ENST00000593727.1	39.402	23.114	66.024	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MFSD14C_LS012	chr9:96948920|96949555:-	MFSD14C	major facilitator superfamily domain containing 14C	protein coding gene	no	ENST00000375223.4	0.570	0.375	1.154	0.564(5401)	0.671(471)	0.38(6600)	non tumor-specific	nAS	yes
UN_B3GNT7_LS0033	chr2:231399816|231399924:+	B3GNT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein coding gene	no	.	6.393	7.664	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
DAP3P1_LS002	chr1:155598915|155602073:+	DAP3P1	death associated protein 3 pseudogene 1	pseudogene	no	ENST00000441522.2	0.296	0.079	0.602	0.058(558)	0.033(23)	0.032(557)	non tumor-specific	nAS	yes
GOLGA8R_LS012	chr15:30409650|30409746:-	GOLGA8R	golgin A8 family member R	protein coding gene	no	ENST00000327271.10	0.876	1.384	0.818	0.169(1619)	0.293(206)	0.321(5587)	non tumor-specific	intron_retention	yes
AC068888.1_LS006	chr12:53043147|53045961:-	AC068888.1	-	lncRNA gene	no	ENST00000546767.5	0.304	0.205	0.978	0.197(1888)	0.338(237)	0.267(4637)	non tumor-specific	nAS	yes
C11orf80_LS020	chr11:66788269|66796281:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	ENST00000525908.6;ENST00000360962.9;ENST00000527368.5;ENST00000540737.6;ENST00000642265.1;ENST00000525449.6;ENST00000532089.5;ENST00000526260.1	3.867	3.525	3.494	0.944(9048)	0.926(650)	0.87(15131)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
XGY1_LS002	chrY:12484754|12488434:-	XGY1	XG pseudogene, Y-linked 1	pseudogene	no	ENST00000381172.3	0.500	0.000	0.641	0.002(17)	0(0)	0.031(537)	non tumor-specific	nAS	yes
RYR2_LS059	chr1:237674219|237674731:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	3.363	1.829	3.179	0.085(816)	0.185(130)	0.618(10738)	non tumor-specific	nAS	yes
UN_RNA5SP37_UP_LS0002	chr13:97532173|97533486:-	RNA5SP37	RNA, 5S ribosomal pseudogene 37	no	no	.	7.403	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VGLL4_LS0025	chr3:11558610|11558632:+	VGLL4	vestigial like family member 4	protein coding gene	no	.	2.402	0.412	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
GLI3_LS011	chr7:42048696|42076752:-	GLI3	GLI family zinc finger 3	protein coding gene	yes	ENST00000395925.7;ENST00000479210.1;ENST00000448703.5	5.432	3.206	4.384	0.544(5215)	0.746(524)	0.801(13925)	non tumor-specific	exon_skip	yes
MYBBP1A_LS029	chr17:4553917|4554019:-	MYBBP1A	MYB binding protein 1a	protein coding gene	yes	ENST00000381556.6;ENST00000573116.5;ENST00000254718.8	20.407	9.065	19.214	0.97(9297)	0.984(691)	0.976(16966)	non tumor-specific	intron_retention	yes
UN_FCGBP_LS0033	chr19:39870415|39872040:-	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	29.893	11.528	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_TIMP2_LS0027	chr17:78853945|78855588:+	TIMP2	TIMP metallopeptidase inhibitor 2	protein coding gene	no	.	4.810	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
SLC7A2_LS016	chr8:17560533|17561944:+	SLC7A2	solute carrier family 7 member 2	protein coding gene	no	ENST00000494857.5;ENST00000522656.5;ENST00000470360.5;ENST00000004531.14;ENST00000398090.3;ENST00000640220.1	9.853	13.544	10.803	0.665(6368)	0.947(665)	0.883(15342)	non tumor-specific	nAS	yes
UN_SND1_LS0061	chr7:128087039|128089489:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	.	47.056	2.816	0.000	0.013(125)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
SPATA32_LS001	chr17:45254513|45255115:-	SPATA32	spermatogenesis associated 32	protein coding gene	no	ENST00000588866.5;ENST00000586359.1;ENST00000331780.4	1.535	0.199	0.708	0.01(92)	0.003(2)	0.05(870)	non tumor-specific	nAS	yes
UN_LINC01588_LS0035	chr14:50000044|50001162:-	LINC01588	long intergenic non-protein coding RNA 1588	lncRNA gene	no	.	1.836	1.076	0.000	0.011(110)	0.034(24)	0(0)	non tumor-specific	exon_skip	no
ELMO1_LS003	chr7:36861736|36895009:-	ELMO1	engulfment and cell motility 1	protein coding gene	no	ENST00000487843.1	0.115	0.033	0.649	0.16(1532)	0.145(102)	0.017(295)	non tumor-specific	nAS	yes
UN_AP000943.2_LS0009	chr11:94644153|94647335:+	AP000943.2	-	lncRNA gene	no	.	3.084	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HIGD1AP4_UP_LS0027	chr2:223602421|223602559:-	HIGD1AP4	HIG1 hypoxia inducible domain family member 1A pseudogene 4	pseudogene	no	.	0.699	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPIL6_LS0022	chr6:109439984|109440456:-	PPIL6	peptidylprolyl isomerase like 6	protein coding gene	no	.	1.390	0.265	0.000	0.01(94)	0.007(5)	0(0)	non tumor-specific	nAS	no
BUD13_LS004	chr11:116757940|116762553:-	BUD13	BUD13 homolog	protein coding gene	no	ENST00000419189.1	0.490	0.219	0.684	0.308(2949)	0.266(187)	0.044(763)	non tumor-specific	nAS	yes
UN_COG8_LS0011	chr16:69322604|69322652:-	COG8	component of oligomeric golgi complex 8	protein coding gene	no	.	5.009	0.021	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZFAND1_LS027	chr8:81718224|81732199:-	ZFAND1	zinc finger AN1-type containing 1	protein coding gene	no	ENST00000520635.5;ENST00000520604.5;ENST00000521742.5;ENST00000521885.5;ENST00000520941.5	2.667	1.654	2.385	0.719(6892)	0.88(618)	0.509(8846)	non tumor-specific	exon_skip	yes
UN_AC119403.2_UP_LS0002	chr19:2915708|2936524:-	AC119403.2	-	pseudogene	no	.	3.105	0.133	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL020996.1_LS005	chr1:25818424|25819712:-	AL020996.1	-	lncRNA gene	no	ENST00000453649.1	0.513	0.143	0.719	0.047(453)	0.071(50)	0.203(3530)	non tumor-specific	nAS	yes
SLC25A40_LS005	chr7:87841714|87841932:-	SLC25A40	solute carrier family 25 member 40	protein coding gene	no	ENST00000446236.5	0.402	0.147	0.876	0.102(977)	0.091(64)	0.422(7334)	non tumor-specific	exon_skip;intron_retention	yes
PRR5L_LS010	chr11:36376587|36400997:+	PRR5L	proline rich 5 like	protein coding gene	no	.;.	0.158	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PDGFC_LS0017	chr4:156850416|156970506:-	PDGFC	platelet derived growth factor C	protein coding gene	no	.	1.680	0.522	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_INPP5K_LS0017	chr17:1509353|1513453:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	.	4.579	1.080	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
CAMK2B_LS060	chr7:44284225|44334262:-	CAMK2B	calcium/calmodulin dependent protein kinase II beta	protein coding gene	no	ENST00000497584.5	0.155	0.000	0.765	0(4)	0(0)	0.011(197)	non tumor-specific	nAS	yes
ABCD4_LS054	chr14:74300035|74300150:-	ABCD4	ATP binding cassette subfamily D member 4	protein coding gene	no	ENST00000489207.1	0.021	0.008	0.791	0.098(940)	0.073(51)	0.286(4979)	non tumor-specific	nAS	yes
UN_AC015977.1_UP_LS0003	chr2:26679619|26692930:-	AC015977.1	-	pseudogene	no	.	2.164	0.132	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
MARC1_LS006	chr1:220798014|220798832:+	MARC1	mitochondrial amidoxime reducing component 1	protein coding gene	no	.;.	3.890	0.070	0.000	0.007(70)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CNOT10_LS020	chr3:32733544|32734800:+	CNOT10	CCR4-NOT transcription complex subunit 10	protein coding gene	no	ENST00000331889.10;ENST00000328834.9;ENST00000435630.5;ENST00000454516.6;ENST00000416457.5	34.910	18.972	15.608	0.969(9288)	0.991(696)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_TSPAN15_LS0058	chr10:69507267|69507308:-	TSPAN15	tetraspanin 15	protein coding gene	no	.	5.142	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
EHHADH_LS001	chr3:185193487|185204416:-	EHHADH	enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase	protein coding gene	no	ENST00000231887.7;ENST00000456310.5	14.236	35.906	3.557	0.924(8852)	0.986(692)	0.882(15327)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL137847.3_UP_LS0020	chr9:83063413|83074154:+	AL137847.3	-	pseudogene	no	.	1.707	0.564	0.000	0.023(223)	0.043(30)	0(0)	non tumor-specific	nAS	no
ARHGAP10_LS017	chr4:147965129|147966680:+	ARHGAP10	Rho GTPase activating protein 21	protein coding gene	no	ENST00000336498.7;ENST00000506054.5;ENST00000507661.1;ENST00000506020.5	12.805	16.318	39.475	0.943(9037)	0.989(694)	0.969(16847)	non tumor-specific	alt_3prime	yes
TMEM176B_LS020	chr7:150796577|150800291:-	TMEM176B	transmembrane protein 176B	protein coding gene	no	ENST00000434545.5	0.862	2.161	1.968	0.373(3576)	0.459(322)	0.633(11007)	non tumor-specific	nAS	yes
UN_MLH1_LS0025	chr3:37040294|37047519:+	MLH1	mutL homolog 1	protein coding gene	yes	.	4.620	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CC2D1A_LS0040	chr19:13930289|13930392:+	CC2D1A	coiled-coil and C2 domain containing 1A	protein coding gene	no	.	17.044	0.264	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_TAPBP_LS0175	chr6:33304168|33304310:+	TAPBP	TAP binding protein	protein coding gene	no	.	1.786	0.149	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAD54B_LS007	chr8:94391899|94393743:-	RAD54B	RAD54 homolog B	protein coding gene	no	ENST00000336148.9;ENST00000463267.5	6.457	1.178	2.161	0.841(8053)	0.63(442)	0.803(13964)	non tumor-specific	nAS	yes
CEP250_LS023	chr20:35474052|35474794:+	CEP250	centrosomal protein 250	protein coding gene	no	ENST00000425096.1	0.261	0.160	1.001	0.322(3088)	0.299(210)	0.449(7803)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PANK3_LS008	chr5:168568998|168579256:-	PANK3	pantothenate kinase 3	protein coding gene	no	ENST00000239231.6	4.895	5.197	7.279	0.926(8873)	0.953(669)	0.961(16698)	non tumor-specific	exon_skip	yes
DAZAP2_LS015	chr12:51240461|51242330:+	DAZAP2	DAZ associated protein 2	protein coding gene	no	ENST00000439799.6;ENST00000439799.6	0.067	0.113	1.512	0.766(7336)	0.859(603)	0.713(12385)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AFF3_LS0025	chr2:100104518|100142484:-	AFF3	AF4/FMR2 family member 3	protein coding gene	yes	.	0.471	0.366	0.000	0.002(18)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_NEDD4L_UP_LS0007	chr18:57913945|57915268:+	NEDD4L	NEDD4 like E3 ubiquitin protein ligase	protein coding gene	yes	.	3.261	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHFR_LS0131	chr12:132948270|132954113:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	1.246	0.016	0.000	0.014(138)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGAL_LS049	chr16:30517086|30517649:+	ITGAL	integrin subunit alpha L	protein coding gene	no	ENST00000356798.10;ENST00000358164.9;ENST00000433423.2	18.560	8.957	3.540	0.8(7664)	0.869(610)	0.824(14328)	non tumor-specific	exon_skip	yes
IDO1_LS010	chr8:39909030|39913001:+	IDO1	indoleamine 2,3-dioxygenase 1	protein coding gene	no	.;.	5.042	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
COL6A4P2_LS005	chr3:130221439|130221789:+	COL6A4P2	collagen type VI alpha 4 pseudogene 2	pseudogene	no	ENST00000504443.6;ENST00000507516.3	0.490	0.013	0.971	0.013(128)	0.003(2)	0.304(5279)	non tumor-specific	nAS	yes
AC136297.1_LS001	chr11:1350762|1360715:+	AC136297.1	-	lncRNA gene	no	ENST00000650218.1	1.094	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	nAS	yes
PAQR3_LS026	chr4:78935283|78939040:-	PAQR3	progestin and adipoQ receptor family member 3	protein coding gene	no	ENST00000342820.10;ENST00000511594.5;ENST00000512733.5;ENST00000395594.2	3.513	2.790	3.266	0.86(8243)	0.939(659)	0.887(15420)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TMPRSS15_LS0018	chr21:18476697|18477181:-	TMPRSS15	transmembrane serine protease 15	protein coding gene	no	.	1.275	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ASB4_LS0012	chr7:95532165|95536437:+	ASB4	ankyrin repeat and SOCS box containing 4	protein coding gene	no	.	1.943	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_LAMA3_LS0073	chr18:23904694|23905526:+	LAMA3	laminin subunit alpha 4	protein coding gene	no	.	3.383	0.931	0.000	0.007(63)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
AL139220.2_LS034	chr1:44107205|44115359:+	AL139220.2	-	lncRNA gene	no	ENST00000625982.1	1.443	0.016	0.589	0.002(20)	0.001(1)	0.002(28)	non tumor-specific	nAS	yes
UN_RNU6-442P_UP_LS0010	chr8:125580497|125608903:+	RNU6-442P	RNA, U6 small nuclear 442, pseudogene	small non-coding RNA gene	no	.	2.019	0.126	0.000	0.001(11)	0.01(7)	0(0)	non tumor-specific	nAS	no
AL645929.2_LS001	chr6:29850629|29852322:-	AL645929.2	-	pseudogene	no	ENST00000647952.1	2.757	0.289	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	nAS	yes
NOP16_LS004	chr5:176384286|176388433:-	NOP16	NOP16 nucleolar protein	protein coding gene	no	ENST00000616685.1	0.034	0.016	0.592	0.663(6354)	0.516(362)	0.029(505)	non tumor-specific	exon_skip	yes
TJAP1_LS020	chr6:43500772|43501526:+	TJAP1	tight junction associated protein 1	protein coding gene	no	ENST00000372444.6;ENST00000372445.9;ENST00000436109.6;ENST00000372454.6;ENST00000442878.6;ENST00000259751.5;ENST00000372452.5;ENST00000372449.5;ENST00000438588.6;ENST00000483640.5;ENST00000478173.5;ENST00000459851.5	12.992	7.061	25.283	0.984(9431)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ANKRD52_LS019	chr12:56253086|56253288:-	ANKRD52	ankyrin repeat domain 52	protein coding gene	no	ENST00000267116.7	19.433	12.620	12.430	0.867(8311)	0.909(638)	0.965(16778)	non tumor-specific	nAS	yes
TRA2B_LS021	chr3:185926734|185931577:-	TRA2B	transformer 2 beta homolog	protein coding gene	no	ENST00000487615.5;ENST00000456380.5;ENST00000477939.1;ENST00000471134.1;ENST00000487615.5;ENST00000456380.5;ENST00000477939.1;ENST00000471134.1;ENST00000487615.5;ENST00000456380.5;ENST00000477939.1;ENST00000471134.1	30.063	18.123	30.850	0.981(9397)	0.994(698)	0.978(17003)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UBE2L6_LS001	chr11:57552509|57554437:-	UBE2L6	ubiquitin conjugating enzyme E2 L6	protein coding gene	no	ENST00000340573.8;ENST00000287156.8;ENST00000528275.1;ENST00000527022.1;ENST00000526659.1	295.060	126.864	107.963	0.958(9180)	0.963(676)	0.979(17021)	non tumor-specific	exon_skip	yes
AC084759.2_LS005	chr15:53968150|53972670:-	AC084759.2	-	lncRNA gene	no	ENST00000558866.5;ENST00000557976.5	6.160	0.000	0.901	0.003(25)	0(0)	0.024(410)	non tumor-specific	nAS	yes
UN_AL355301.1_UP_LS0004	chr10:98267822|98268570:-	AL355301.1	-	small non-coding RNA gene	no	.	0.548	0.028	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UBR3_LS039	chr2:170013972|170015281:+	UBR3	ubiquitin protein ligase E3 component n-recognin 3	protein coding gene	no	ENST00000444475.5	0.084	0.108	0.977	0.238(2279)	0.261(183)	0.536(9324)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BBOX1-AS1_UP_LS0008	chr11:27277812|27338098:-	BBOX1-AS1	BBOX1 antisense RNA 1	lncRNA gene	no	.	1.030	0.016	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
SSH1_LS021	chr12:108818313|108823258:-	SSH1	slingshot protein phosphatase 1	protein coding gene	no	ENST00000326495.9;ENST00000551165.5;ENST00000326470.9;ENST00000546697.1	7.859	5.722	4.617	0.814(7803)	0.906(636)	0.934(16228)	non tumor-specific	exon_skip	yes
UN_CYR61_LS0007	chr1:85580855|85580899:-	CYR61	cellular communication network factor 1	protein coding gene	no	.	1.479	2.209	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FO538757.1_LS0025	chr1:187577|188439:-	FO538757.1	-	pseudogene	no	.	1.236	0.333	0.000	0.013(122)	0.017(12)	0(0)	non tumor-specific	nAS	no
ARHGEF40_LS031	chr14:21087105|21087320:+	ARHGEF40	Rho guanine nucleotide exchange factor 40	protein coding gene	no	ENST00000298694.8;ENST00000553709.5	52.702	40.802	34.429	0.983(9417)	0.996(699)	0.976(16965)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DHRS7_LS0015	chr14:60149561|60150065:-	DHRS7	dehydrogenase/reductase 7	protein coding gene	no	.	6.651	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AC012409.1_LS002	chr15:96171645|96173752:+	AC012409.1	-	lncRNA gene	no	ENST00000558449.1	0.810	1.941	1.236	0.153(1463)	0.315(221)	0.041(714)	non tumor-specific	nAS	yes
UN_BAHCC1_LS0006	chr17:81399917|81400216:+	BAHCC1	BAH domain and coiled-coil containing 1	protein coding gene	no	.	2.031	0.143	0.000	0.016(150)	0.009(6)	0(0)	non tumor-specific	nAS	no
SERPINB6_LS002	chr6:2949069|2953044:-	SERPINB6	serpin family B member 6	protein coding gene	no	ENST00000643314.1;ENST00000380524.5;ENST00000380529.5;ENST00000380539.6;ENST00000380546.7;ENST00000643098.1;ENST00000335686.9;ENST00000646722.1;ENST00000649845.1;ENST00000644178.1;ENST00000647157.1;ENST00000612421.3;ENST00000644697.1;ENST00000616722.4;ENST00000642543.1;ENST00000644388.1;ENST00000380520.6;ENST00000645580.1;ENST00000644693.1;ENST00000644828.1	293.751	209.156	292.190	0.998(9559)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_EEF2K_LS0021	chr16:22266876|22272687:+	EEF2K	eukaryotic elongation factor 2 kinase	protein coding gene	no	.	0.739	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ESPNP_LS0008	chr1:16691294|16696488:-	ESPNP	espin pseudogene	pseudogene	no	.	3.456	0.562	0.000	0.089(849)	0.06(42)	0(0)	non tumor-specific	nAS	no
UN_AC091043.1_UP_LS0002	chr18:22038086|22056634:+	AC091043.1	-	lncRNA gene	no	.	3.412	2.909	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GGT1_LS0001	chr22:24583808|24586577:+	GGT1	gamma-glutamyltransferase 1	protein coding gene	no	.	0.518	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
GARNL3_LS023	chr9:127332349|127333023:+	GARNL3	GTPase activating Rap/RanGAP domain like 3	protein coding gene	no	ENST00000439286.5;ENST00000435213.6;ENST00000373387.8;ENST00000373386.6;ENST00000495172.1	1.862	2.402	5.710	0.623(5966)	0.825(579)	0.907(15759)	non tumor-specific	nAS	yes
CREB3L1_LS009	chr11:46310067|46311032:+	CREB3L1	cAMP responsive element binding protein 3 like 1	protein coding gene	yes	ENST00000621158.4;ENST00000621158.4	51.253	61.836	9.111	0.841(8060)	0.897(630)	0.918(15950)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL513323.1_UP_LS0006	chr1:159503275|159576538:-	AL513323.1	-	lncRNA gene	no	.	2.796	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRAV4_LS0001	chr14:21736223|21736695:+	TRAV4	T cell receptor alpha variable 4	no	no	.	2.254	0.592	0.000	0.02(191)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_DEFB135_UP_LS0015	chr8:11843159|11903525:+	DEFB135	defensin beta 135	protein coding gene	no	.	19.610	4.571	0.000	0.01(99)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC106900.2_UP_LS0065	chr2:173692750|173693754:+	AC106900.2	-	lncRNA gene	no	.	1.807	0.336	0.000	0.054(516)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_CEP164_LS0042	chr11:117382942|117390777:+	CEP164	centrosomal protein 164	protein coding gene	no	.	0.935	0.644	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UNC5A_LS002	chr5:176862845|176864816:+	UNC5A	unc-5 netrin receptor A	protein coding gene	yes	ENST00000513890.1	0.370	0.000	0.735	0(3)	0(0)	0.007(119)	non tumor-specific	nAS	yes
ITSN1_LS033	chr21:33799929|33802437:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000419241.1	0.022	0.042	0.674	0.188(1801)	0.278(195)	0.068(1180)	non tumor-specific	exon_skip	yes
UN_AL008720.1_UP_LS0022	chr22:48476411|48487667:-	AL008720.1	-	lncRNA gene	no	.	2.079	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POLH_LS0014	chr6:43585230|43587272:+	POLH	DNA polymerase theta	protein coding gene	no	.	3.159	0.016	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC092375.1_UP_LS0004	chr16:21405082|21837420:+	AC092375.1	-	pseudogene	no	.	22.994	5.367	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
JAK1_LS015	chr1:64850910|64855509:-	JAK1	Janus kinase 1	protein coding gene	yes	ENST00000342505.4	98.725	86.276	66.201	0.978(9367)	0.99(695)	0.979(17019)	non tumor-specific	nAS	yes
PBX1_LS030	chr1:164812149|164821537:+	PBX1	PBX homeobox 1	protein coding gene	yes	ENST00000367897.5;ENST00000612123.3	25.412	27.055	17.975	0.929(8896)	0.996(699)	0.96(16686)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC16A7_UP_LS0005	chr12:59056108|59164932:+	SLC16A7	solute carrier family 16 member 7	protein coding gene	no	.	2.393	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDK11A_LS0024	chr1:1718295|1718404:+	CDK11A	cyclin dependent kinase 11A	protein coding gene	no	.	2.560	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SIGLEC16_LS003	chr19:49970607|49971121:+	SIGLEC16	sialic acid binding Ig like lectin 16	pseudogene	no	ENST00000602139.5;ENST00000599858.1	1.019	2.854	1.099	0.028(266)	0.058(41)	0.096(1674)	non tumor-specific	nAS	yes
AC105001.1_LS002	chr8:10729630|10771195:+	AC105001.1	-	lncRNA gene	no	ENST00000519568.1	0.189	0.089	0.655	0.046(445)	0.14(98)	0.014(251)	non tumor-specific	nAS	yes
AAR2_LS005	chr20:36236503|36239821:+	AAR2	AAR2 splicing factor	protein coding gene	no	ENST00000397286.7;ENST00000320849.8;ENST00000397286.7;ENST00000320849.8	12.243	8.159	8.126	0.904(8662)	0.937(658)	0.967(16817)	non tumor-specific	alt_5prime;exon_skip	yes
UN_USP54_LS0081	chr10:73592957|73601532:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	.	0.376	0.543	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TMEM196_LS002	chr7:19722134|19725514:-	TMEM196	transmembrane protein 196	protein coding gene	no	ENST00000405764.7;ENST00000493519.2	0.935	0.292	1.907	0.059(561)	0.037(26)	0.177(3073)	non tumor-specific	exon_skip	yes
UN_LINC00578_LS0176	chr3:177687588|177718098:+	LINC00578	long intergenic non-protein coding RNA 578	lncRNA gene	no	.	1.899	0.903	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RF00561_UP_LS0011	chr16:7823641|7831136:-	RF00561	-	small non-coding RNA gene	no	.	2.267	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL663061.1_UP_LS0005	chr6:31463279|31505617:+	AL663061.1	-	pseudogene	no	.	3.740	0.088	0.000	0.019(178)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ITFG1_LS0015	chr16:47218946|47258632:-	ITFG1	integrin alpha FG-GAP repeat containing 1	protein coding gene	no	.	9.986	3.232	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
EFCAB8_LS023	chr20:32943804|32958421:+	EFCAB8	EF-hand calcium binding domain 8	protein coding gene	no	ENST00000400522.8	3.916	0.000	0.829	0.006(57)	0(0)	0.264(4594)	non tumor-specific	nAS	yes
GOLGA6L1_LS007	chr15:23133673|23134759:-	GOLGA6L1	golgin A6 family like 1	protein coding gene	no	ENST00000614055.1	0.678	0.094	0.614	0.01(95)	0.001(1)	0(1)	non tumor-specific	nAS	yes
UN_AC126283.2_LS0009	chr4:109718759|109730046:-	AC126283.2	-	protein coding gene	no	.	0.882	0.052	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_SHISA4_LS0003	chr1:201888940|201889459:+	SHISA4	shisa family member 4	protein coding gene	no	.	3.187	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNK1_UP_LS0004	chr12:689847|689952:+	WNK1	WNK lysine deficient protein kinase 1	protein coding gene	no	.	2.387	0.173	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TDRD10_LS0004	chr1:154518735|154520304:+	TDRD10	tudor domain containing 10	protein coding gene	no	.	2.019	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KLC1_LS043	chr14:103700727|103701201:+	KLC1	kinesin light chain 1	protein coding gene	no	ENST00000348520.10;ENST00000555836.5;ENST00000334553.10;ENST00000557450.5;ENST00000452929.6;ENST00000554280.5;ENST00000538504.6;ENST00000557686.1;ENST00000556986.1	24.295	14.914	129.315	0.973(9324)	0.977(686)	0.979(17021)	non tumor-specific	intron_retention	yes
PHKG2_LS013	chr16:30753557|30756182:+	PHKG2	phosphorylase kinase catalytic subunit gamma 2	protein coding gene	no	ENST00000563588.5;ENST00000565924.5;ENST00000424889.7;ENST00000328273.11;ENST00000563913.5;ENST00000565897.5;ENST00000569684.1	30.718	13.945	45.467	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
F11_LS017	chr4:186286510|186287684:+	F11	zinc finger protein 160	protein coding gene	no	ENST00000403665.6;ENST00000264692.8	12.278	35.235	1.054	0.092(881)	0.433(304)	0.247(4300)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TMPO_LS0039	chr12:98548510|98549051:+	TMPO	thymopoietin	protein coding gene	no	.	12.015	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AC146944.2_LS005	chr5:70478581|70479028:+	AC146944.2	-	pseudogene	no	ENST00000425529.7	0.573	0.363	1.960	0.716(6860)	0.755(530)	0.739(12850)	non tumor-specific	nAS	yes
UN_AC130686.1_UP_LS0196	chr17:41583267|41627920:+	AC130686.1	-	lncRNA gene	no	.	116.624	16.494	0.000	0.01(96)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC020915.5_LS0068	chr19:58259691|58259789:-	AC020915.5	-	protein coding gene	no	.	1.034	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1011P_UP_LS0001	chr8:103371233|103371630:+	RNU6-1011P	RNA, U6 small nuclear 1011, pseudogene	small non-coding RNA gene	no	.	0.699	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ANKAR_LS0004	chr2:189689964|189705023:+	ANKAR	ankyrin and armadillo repeat containing	protein coding gene	no	.	7.441	0.577	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
BIRC6_LS081	chr2:32611582|32617725:+	BIRC6	baculoviral IAP repeat containing 6	protein coding gene	no	ENST00000421745.6;ENST00000471232.5	9.871	9.747	79.664	0.992(9505)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
METTL9_LS011	chr16:21612835|21624933:+	METTL9	methyltransferase like 9	protein coding gene	no	.;.	50.957	9.374	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AC087482.1_LS008	chr15:67054909|67059140:-	AC087482.1	-	lncRNA gene	no	ENST00000636067.1	2.800	3.035	0.700	0.002(17)	0.001(1)	0.044(764)	non tumor-specific	nAS	yes
METTL23_LS017	chr17:76727338|76732978:+	METTL23	methyltransferase like 23	protein coding gene	no	.;.	6.038	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
ATP2B2_LS016	chr3:10358925|10359882:-	ATP2B2	ATPase plasma membrane Ca2+ transporting 4	protein coding gene	no	ENST00000397077.6;ENST00000360273.6;ENST00000383800.8;ENST00000460129.5;ENST00000352432.9;ENST00000644553.1;ENST00000643662.1;ENST00000646379.1;ENST00000452124.2;ENST00000645850.1;ENST00000638646.2;ENST00000644807.1	7.555	7.615	3.552	0.2(1919)	0.14(98)	0.386(6707)	non tumor-specific	nAS	yes
NVL_LS011	chr1:224268133|224269732:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000496393.2	0.281	0.104	0.857	0.818(7840)	0.781(548)	0.342(5940)	non tumor-specific	alt_3prime;exon_skip	yes
GTPBP1_LS036	chr22:38736256|38737951:+	GTPBP1	GTP binding protein 1	protein coding gene	no	ENST00000458073.5	0.859	0.579	5.725	0.357(3420)	0.397(279)	0.925(16080)	non tumor-specific	exon_skip	yes
UN_SPAG6_LS0005	chr10:22359536|22364853:+	SPAG6	sperm associated antigen 6	protein coding gene	no	.	3.296	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
ETFA_LS017	chr15:76284460|76285637:-	ETFA	electron transfer flavoprotein subunit alpha	protein coding gene	no	ENST00000560345.5	0.459	0.330	0.751	0.153(1468)	0.212(149)	0.206(3584)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_CST3_LS0158	chr20:23637914|23638412:-	CST3	cystatin C	protein coding gene	no	.	0.364	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_POP5_LS0002	chr12:120579445|120579514:-	POP5	POP5 homolog, ribonuclease P/MRP subunit	protein coding gene	no	.	5.825	0.167	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PEX1_LS0033	chr7:92515554|92517276:-	PEX1	peroxisomal biogenesis factor 1	protein coding gene	no	.	1.090	0.141	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TBCD_LS004	chr17:82766368|82768420:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000355528.8;ENST00000539345.6	24.016	14.065	24.794	0.972(9317)	0.993(697)	0.977(16987)	non tumor-specific	nAS	yes
UN_RNU6-332P_UP_LS0057	chrX:94501825|94529410:-	RNU6-332P	RNA, U6 small nuclear 332, pseudogene	small non-coding RNA gene	no	.	2.112	0.353	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL049612.1_UP_LS0063	chr6:170154661|170154742:-	AL049612.1	-	lncRNA gene	no	.	4.278	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	nAS	no
STK26_LS010	chrX:132068569|132069478:+	STK26	serine/threonine kinase 26	protein coding gene	no	ENST00000394334.6;ENST00000481105.5;ENST00000354719.10;ENST00000394335.6	24.214	12.172	6.210	0.822(7872)	0.946(664)	0.879(15275)	non tumor-specific	exon_skip	yes
KLRF1_LS007	chr12:9833452|9842302:+	KLRF1	killer cell lectin like receptor F1	protein coding gene	no	ENST00000545196.1	0.419	0.335	0.773	0.02(194)	0.047(33)	0.021(357)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC002511.2_UP_LS0003	chr19:35424713|35429664:-	AC002511.2	-	lncRNA gene	no	.	4.390	0.660	0.000	0.022(208)	0.016(11)	0(0)	non tumor-specific	nAS	no
WDR81_LS009	chr17:1728626|1730380:+	WDR81	WD repeat domain 81	protein coding gene	no	ENST00000309182.9;ENST00000409644.5;ENST00000464528.5	16.648	9.840	14.493	0.927(8883)	0.947(665)	0.976(16969)	non tumor-specific	alt_3prime;exon_skip	yes
COG3_LS027	chr13:45530780|45534702:+	COG3	component of oligomeric golgi complex 3	protein coding gene	no	ENST00000349995.9	27.040	20.642	22.438	0.977(9360)	0.986(692)	0.977(16985)	non tumor-specific	exon_skip	yes
UN_AHNAK2_LS0311	chr14:104945625|104946121:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	11.948	0.076	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_TSC1_UP_LS0108	chr9:133020845|133020891:-	TSC1	TSC complex subunit 1	protein coding gene	yes	.	288.890	5.309	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL6A3_LS040	chr2:237367286|237368563:-	COL6A3	collagen type VI alpha 3 chain	protein coding gene	no	ENST00000353578.8;ENST00000295550.8;ENST00000472056.5;ENST00000347401.7;ENST00000409809.5	58.456	40.064	51.528	0.834(7993)	0.963(676)	0.868(15095)	non tumor-specific	alt_3prime;exon_skip	yes
LARGE2_LS003	chr11:45922728|45923058:+	LARGE2	LARGE xylosyl- and glucuronyltransferase 2	protein coding gene	no	.;.	1.005	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AL356258.1_UP_LS0006	chr10:31134801|31136513:+	AL356258.1	-	lncRNA gene	no	.	2.002	0.365	0.000	0.018(175)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_SGIP1_LS0040	chr1:66695493|66716017:+	SGIP1	SH3GL interacting endocytic adaptor 1	protein coding gene	no	.	2.211	0.238	0.000	0.009(89)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
PPARA_LS001	chr22:46150652|46151888:+	PPARA	peroxisome proliferator activated receptor alpha	protein coding gene	yes	ENST00000440343.5;ENST00000415785.5;ENST00000262735.9;ENST00000420804.5	0.785	0.663	2.056	0.73(6990)	0.858(602)	0.839(14587)	non tumor-specific	exon_skip	yes
MBTPS1_LS012	chr16:84068454|84069866:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	ENST00000570064.5;ENST00000343411.7	98.870	73.999	70.059	0.992(9505)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
MIPOL1_LS003	chr14:37198104|37212230:+	MIPOL1	mirror-image polydactyly 1	protein coding gene	no	ENST00000556451.5;ENST00000556451.5	0.964	0.245	0.746	0.052(495)	0.078(55)	0.29(5035)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
CORO2A_LS009	chr9:98132301|98133038:-	CORO2A	coronin 2A	protein coding gene	no	ENST00000343933.9;ENST00000375077.4	19.391	12.553	3.868	0.83(7955)	0.89(625)	0.818(14227)	non tumor-specific	nAS	yes
DYNC1H1_LS057	chr14:102034188|102034335:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	ENST00000556791.2	8.330	6.040	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SIRT1_LS003	chr10:67887533|67888882:+	SIRT1	sirtuin 1	protein coding gene	yes	ENST00000212015.10;ENST00000497639.5	11.876	10.596	10.700	0.925(8858)	0.986(692)	0.969(16844)	non tumor-specific	exon_skip	yes
SNX10_LS013	chr7:26364635|26365047:+	SNX10	sorting nexin 10	protein coding gene	no	ENST00000446848.6;ENST00000416246.5;ENST00000338523.8;ENST00000396376.5;ENST00000409367.5;ENST00000619420.4	33.064	25.793	5.158	0.928(8893)	0.947(665)	0.85(14773)	non tumor-specific	alt_5prime	yes
UN_PIP5K1A_UP_LS0002	chr1:151195499|151197691:+	PIP5K1A	phosphatidylinositol-4-phosphate 5-kinase type 1 alpha	protein coding gene	no	.	1.822	0.321	0.000	0.007(65)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DRC1_LS0004	chr2:26408196|26414344:+	DRC1	dynein regulatory complex subunit 1	protein coding gene	no	.	1.254	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
FKTN_LS002	chr9:105558165|105574945:+	FKTN	fukutin	protein coding gene	no	ENST00000223528.6;ENST00000490134.1	0.446	0.306	0.934	0.624(5979)	0.705(495)	0.47(8166)	non tumor-specific	exon_skip	yes
LINC01950_LS001	chr5:106815546|106818399:-	LINC01950	long intergenic non-protein coding RNA 1950	lncRNA gene	no	ENST00000513273.1	2.692	0.435	0.683	0.005(48)	0.001(1)	0.031(533)	non tumor-specific	nAS	yes
UN_PLSCR4_LS0015	chr3:146234531|146235374:+	PLSCR4	phospholipid scramblase 4	protein coding gene	no	.	2.733	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ZC3H7B_LS004	chr22:41325918|41327206:+	ZC3H7B	zinc finger CCCH-type containing 7B	protein coding gene	no	ENST00000352645.4;ENST00000486331.1	62.555	53.820	30.024	0.968(9279)	0.987(693)	0.976(16973)	non tumor-specific	alt_3prime;exon_skip	yes
AC020892.2_LS001	chr15:51708274|51713100:-	AC020892.2	-	lncRNA gene	no	ENST00000557891.1	0.202	0.000	0.701	0(2)	0(0)	0.001(22)	non tumor-specific	nAS	yes
AC144836.1_LS001	chr17:1242191|1253914:-	AC144836.1	-	lncRNA gene	no	ENST00000575911.1	0.236	0.046	0.677	0.046(441)	0.044(31)	0.018(305)	non tumor-specific	nAS	yes
UN_PLXNB2_LS0208	chr22:50285182|50285759:-	PLXNB2	plexin B2	protein coding gene	no	.	11.492	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TEP1_LS002	chr14:20368559|20368798:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000553365.5;ENST00000262715.9;ENST00000555008.5;ENST00000555727.5;ENST00000556935.5	22.119	13.037	18.689	0.97(9295)	0.987(693)	0.978(17003)	non tumor-specific	nAS	yes
AIFM3_LS015	chr22:20974551|20974710:+	AIFM3	apoptosis inducing factor mitochondria associated 3	protein coding gene	no	.;.	2.872	0.675	0.000	0.008(73)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
AACSP1_LS007	chr5:178775336|178776142:-	AACSP1	acetoacetyl-CoA synthetase pseudogene 1	pseudogene	no	ENST00000503486.6	6.742	0.143	1.134	0.057(544)	0.003(2)	0.131(2280)	non tumor-specific	nAS	yes
SPEG_LS032	chr2:219451807|219461882:+	SPEG	striated muscle enriched protein kinase	protein coding gene	no	ENST00000312358.11;ENST00000498378.5;ENST00000396698.5;ENST00000464989.5;ENST00000485813.5;ENST00000462545.5;ENST00000463218.5	11.315	6.386	33.383	0.75(7183)	0.866(608)	0.952(16551)	non tumor-specific	exon_skip	yes
UN_EEF1D_LS0035	chr8:143580693|143581054:-	EEF1D	eukaryotic translation elongation factor 1 delta	protein coding gene	yes	.	55.179	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPS6_LS0037	chr9:19378433|19378500:+	RPS6	ribosomal protein S6	protein coding gene	no	.	6.936	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRP72_LS0007	chr4:56474197|56474283:+	SRP72	signal recognition particle 72	protein coding gene	no	.	6.233	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AL591895.1_LS002	chr1:225841187|225846480:-	AL591895.1	-	lncRNA gene	no	ENST00000424332.1	0.889	0.774	2.118	0.664(6361)	0.662(465)	0.794(13801)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
VWA3B_LS010	chr2:98121458|98121945:+	VWA3B	von Willebrand factor A domain containing 3B	protein coding gene	no	ENST00000463635.1	0.772	0.162	0.693	0.006(62)	0.007(5)	0.001(26)	non tumor-specific	intron_retention	yes
EEA1_LS022	chr12:92851266|92852175:-	EEA1	early endosome antigen 1	protein coding gene	no	ENST00000322349.12;ENST00000418984.7	9.743	7.632	4.982	0.769(7368)	0.91(639)	0.889(15448)	non tumor-specific	nAS	yes
UN_ERGIC3_LS0023	chr20:35557529|35557572:-	ERGIC3	ERGIC and golgi 3	protein coding gene	no	.	9.351	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SGSM1_LS003	chr22:24806484|24844897:+	SGSM1	small G protein signaling modulator 1	protein coding gene	no	ENST00000610372.4;ENST00000400358.8;ENST00000400359.4	1.950	1.666	1.678	0.224(2142)	0.517(363)	0.619(10763)	non tumor-specific	nAS	yes
UN_AL160408.3_LS0002	chr1:234682599|234688804:-	AL160408.3	-	lncRNA gene	no	.	4.778	0.164	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	nAS	no
AGO3_LS023	chr1:36039984|36040307:+	AGO3	argonaute RISC catalytic component 3	protein coding gene	no	ENST00000373191.8;ENST00000634486.1;ENST00000246314.10	9.131	4.458	6.768	0.826(7917)	0.873(613)	0.97(16857)	non tumor-specific	exon_skip	yes
UN_LINC02275_LS0022	chr4:169944203|169963135:+	LINC02275	long intergenic non-protein coding RNA 2275	lncRNA gene	no	.	4.262	1.897	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC062028.1_UP_LS0008	chr2:11066622|11075190:+	AC062028.1	-	pseudogene	no	.	2.179	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AKAP6_LS026	chr14:32824815|32829848:+	AKAP6	A-kinase anchoring protein 6	protein coding gene	no	ENST00000280979.8	4.436	3.521	11.168	0.372(3565)	0.658(462)	0.896(15570)	non tumor-specific	alt_3prime	yes
UN_AL603840.1_LS0064	chr1:55871458|55953038:+	AL603840.1	-	lncRNA gene	no	.	3.376	2.846	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPINK4_LS0006	chr9:33233138|33245112:+	SPINK4	serine peptidase inhibitor Kazal type 4	protein coding gene	no	.	3.469	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_5prime	no
CAPN12_LS036	chr19:38738347|38738418:-	CAPN12	calpain 12	protein coding gene	no	ENST00000601953.5;ENST00000328867.8	1.802	1.360	1.422	0.191(1826)	0.118(83)	0.446(7759)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LINC00265_LS0024	chr7:39772430|39779271:+	LINC00265	long intergenic non-protein coding RNA 265	lncRNA gene	no	.	1.872	0.210	0.000	0.007(70)	0.004(3)	0(0)	non tumor-specific	nAS	no
HACD1_LS007	chr10:17599411|17603726:-	HACD1	3-hydroxyacyl-CoA dehydratase 1	protein coding gene	no	.;.	4.570	2.190	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DIP2C_LS0020	chr10:310092|311335:-	DIP2C	disco interacting protein 2 homolog C	protein coding gene	no	.	1.332	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ALDH3B1_LS003	chr11:68015075|68015297:+	ALDH3B1	aldehyde dehydrogenase 3 family member B1	protein coding gene	no	ENST00000617449.4	0.506	0.105	0.655	0.079(760)	0.077(54)	0.027(470)	non tumor-specific	alt_5prime;intron_retention	yes
UN_ACTN4_LS0129	chr19:38724974|38725724:+	ACTN4	actinin alpha 4	protein coding gene	yes	.	14.955	1.870	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_SLC44A5_LS0020	chr1:75275042|75300598:-	SLC44A5	solute carrier family 44 member 5	protein coding gene	no	.	1.131	0.167	0.000	0.01(98)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC097518.1_LS003	chr4:177248307|177248723:-	AC097518.1	-	lncRNA gene	no	ENST00000512516.1	2.052	4.130	0.976	0.008(78)	0.006(4)	0.002(42)	non tumor-specific	nAS	yes
LINC01950_LS002	chr5:106815546|106844061:-	LINC01950	long intergenic non-protein coding RNA 1950	lncRNA gene	no	ENST00000505997.1	0.859	0.293	0.710	0.006(55)	0.006(4)	0.035(601)	non tumor-specific	nAS	yes
ANKRD20A5P_LS003	chr18:14183766|14183929:+	ANKRD20A5P	ankyrin repeat domain 20 family member A5, pseudogene	pseudogene	no	ENST00000581935.5;ENST00000581363.5;ENST00000431648.8	0.216	0.184	1.207	0.152(1460)	0.219(154)	0.33(5744)	non tumor-specific	nAS	yes
PTPN4_LS029	chr2:119946424|119946518:+	PTPN4	protein tyrosine phosphatase non-receptor type 4	protein coding gene	no	ENST00000263708.6;ENST00000430976.5;ENST00000431283.1	10.153	9.179	7.258	0.937(8978)	0.964(677)	0.97(16865)	non tumor-specific	exon_skip	yes
UN_SETD4_LS0013	chr21:36043956|36044598:-	SETD4	SET domain containing 4	protein coding gene	no	.	1.371	0.079	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
OCLN_LS009	chr5:69545119|69547930:+	OCLN	occludin	protein coding gene	no	ENST00000355237.6;ENST00000396442.6;ENST00000538151.2;ENST00000514370.5;ENST00000510666.1	22.464	22.842	5.273	0.937(8980)	0.977(686)	0.742(12893)	non tumor-specific	exon_skip	yes
UN_SGTA_LS0020	chr19:2755044|2755375:+	SGTA	small glutamine rich tetratricopeptide repeat containing alpha	protein coding gene	no	.	2.245	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MTSS1L_LS025	chr16:70680055|70680794:-	MTSS1L	MTSS I-BAR domain containing 2	protein coding gene	no	ENST00000338779.10;ENST00000616026.4;ENST00000338779.10;ENST00000616026.4	37.711	21.954	31.985	0.932(8930)	0.984(691)	0.951(16526)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRAMD1A_LS0014	chr19:35005550|35005685:+	GRAMD1A	GRAM domain containing 1A	protein coding gene	no	.	3.371	0.972	0.000	0.142(1360)	0.054(38)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_OTUD5_LS0035	chrX:48934762|48934789:-	OTUD5	OTU deubiquitinase 5	protein coding gene	no	.	16.037	3.825	0.000	0.007(66)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_STIL_UP_LS0010	chr1:47381143|47437290:-	STIL	STIL centriolar assembly protein	protein coding gene	yes	.	1.435	0.011	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
TSPAN6_LS003	chrX:100630866|100633405:-	TSPAN6	tetraspanin 6	protein coding gene	no	ENST00000612152.4	0.311	0.322	0.689	0.72(6895)	0.816(573)	0.086(1497)	non tumor-specific	exon_skip	yes
ANKRD37_LS006	chr4:185397302|185398937:+	ANKRD37	ankyrin repeat domain 37	protein coding gene	no	ENST00000507479.5;ENST00000335174.5;ENST00000511393.4	16.359	11.945	32.911	0.987(9458)	0.994(698)	0.978(17008)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
XPNPEP1_LS016	chr10:109878058|109880188:-	XPNPEP1	X-prolyl aminopeptidase 1	protein coding gene	no	ENST00000488118.6;ENST00000369683.5;ENST00000502935.5;ENST00000322238.12;ENST00000510988.5;ENST00000472336.5;ENST00000513817.5;ENST00000460055.5	91.708	51.795	44.865	0.993(9516)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
LAD1_LS011	chr1:201385805|201386335:-	LAD1	ladinin 1	protein coding gene	no	ENST00000391967.6;ENST00000367313.4	144.039	90.771	4.680	0.811(7772)	0.953(669)	0.602(10463)	non tumor-specific	alt_5prime;exon_skip	yes
LINC-PINT_LS026	chr7:131042931|131049538:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000416999.1	0.763	0.112	0.725	0.001(11)	0.001(1)	0.002(39)	non tumor-specific	nAS	yes
UN_AL121845.2_LS0004	chr20:63739009|63740377:+	AL121845.2	-	protein coding gene	no	.	6.715	10.883	0.000	0.005(46)	0.023(16)	0(0)	non tumor-specific	nAS	no
RBPJ_LS024	chr4:26383960|26384529:+	RBPJ	recombination signal binding protein for immunoglobulin kappa J region	protein coding gene	no	ENST00000504938.1	0.000	0.000	0.599	0.001(8)	0(0)	0.005(79)	non tumor-specific	exon_skip	yes
RINT1_LS004	chr7:105532869|105536658:+	RINT1	RAD50 interactor 1	protein coding gene	yes	ENST00000493041.5	0.228	0.147	0.635	0.101(965)	0.098(69)	0.084(1465)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SPATA6_LS019	chr1:48411588|48451552:-	SPATA6	spermatogenesis associated 6	protein coding gene	no	ENST00000396199.7;ENST00000396199.7	0.194	0.164	0.737	0.165(1583)	0.212(149)	0.198(3435)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_THBS3_LS0064	chr1:155206406|155206765:-	THBS3	thrombospondin 3	protein coding gene	no	.	2.587	0.117	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
TENM4_LS010	chr11:78712714|78720370:-	TENM4	teneurin transmembrane protein 4	protein coding gene	no	ENST00000278550.11	0.817	0.758	1.144	0.017(166)	0.011(8)	0.089(1543)	non tumor-specific	exon_skip	yes
UN_KIFC2_LS0003	chr8:144466236|144466461:+	KIFC2	kinesin family member C2	protein coding gene	no	.	1.306	0.057	0.000	0.031(299)	0.014(10)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
DGKZ_LS032	chr11:46371603|46371704:+	DGKZ	diacylglycerol kinase zeta	protein coding gene	no	ENST00000343674.10;ENST00000532868.6;ENST00000528615.5;ENST00000531879.5;ENST00000524984.5;ENST00000527911.5;ENST00000456247.6;ENST00000421244.6;ENST00000318201.12;ENST00000454345.5;ENST00000528173.5	48.669	30.865	57.909	0.981(9403)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
UN_AC013549.1_UP_LS0011	chr11:12960415|12962188:-	AC013549.1	-	lncRNA gene	no	.	4.584	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AHNAK2_LS085	chr14:104948322|104951788:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.;.	8.606	0.137	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
USP6_LS013	chr17:5130439|5130602:+	USP6	ubiquitin specific peptidase 6	protein coding gene	yes	ENST00000574788.5;ENST00000575709.5;ENST00000572949.5;ENST00000250066.6;ENST00000357482.5	3.015	0.230	1.713	0.028(266)	0.033(23)	0.382(6642)	non tumor-specific	nAS	yes
ATP13A5_LS014	chr3:193314193|193322491:-	ATP13A5	ATPase 13A5	protein coding gene	no	ENST00000488957.1	0.215	0.018	0.723	0.013(120)	0.024(17)	0(4)	non tumor-specific	nAS	yes
UN_AC132008.2_LS0054	chr3:197624705|197627780:-	AC132008.2	-	pseudogene	no	.	1.388	0.049	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
APOL2_LS016	chr22:36237363|36239136:-	APOL2	apolipoprotein L2	protein coding gene	no	ENST00000476579.1	0.022	0.016	0.678	0.286(2740)	0.231(162)	0.085(1477)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_C6orf120_LS0002	chr6:169702196|169702437:+	C6orf120	chromosome 6 open reading frame 120	protein coding gene	no	.	0.979	0.031	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RNU6-938P_UP_LS0001	chr17:75416667|75471021:-	RNU6-938P	RNA, U6 small nuclear 938, pseudogene	small non-coding RNA gene	no	.	8.593	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
STMP1_LS002	chr7:135662594|135688904:+	STMP1	short transmembrane mitochondrial protein 1	protein coding gene	no	ENST00000422968.2	0.501	0.196	0.919	0.178(1706)	0.168(118)	0.187(3250)	non tumor-specific	exon_skip	yes
UN_DIP2A_LS0079	chr21:46563558|46563858:+	DIP2A	disco interacting protein 2 homolog A	protein coding gene	no	.	3.259	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	intron_retention	no
TMEM98_LS012	chr17:32934324|32936332:+	TMEM98	transmembrane protein 98	protein coding gene	no	ENST00000394642.7;ENST00000579849.5;ENST00000395149.6;ENST00000261713.8;ENST00000578289.5;ENST00000439138.5;ENST00000583120.1	92.615	72.086	66.142	0.972(9314)	0.997(700)	0.951(16530)	non tumor-specific	alt_3prime;exon_skip	yes
UN_METTL15_LS0047	chr11:28424364|28526475:+	METTL15	methyltransferase like 15	protein coding gene	no	.	1.465	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AMYH02020865.1_LS005	chr9:40500758|40503131:+	AMYH02020865.1	-	pseudogene	no	ENST00000454768.3;ENST00000621140.4;ENST00000612975.4;ENST00000412301.6;ENST00000613144.4;ENST00000636189.1;ENST00000618223.4;ENST00000617096.4	0.277	0.163	0.848	0.121(1159)	0.295(207)	0.084(1467)	non tumor-specific	nAS	yes
GSDMB_LS034	chr17:39909924|39912326:-	GSDMB	gasdermin B	protein coding gene	no	ENST00000360317.7;ENST00000394175.6;ENST00000309481.11;ENST00000477054.6;ENST00000394179.5;ENST00000520542.5;ENST00000418519.5;ENST00000523371.5;ENST00000524039.5;ENST00000468820.1;ENST00000464556.1;ENST00000360317.7;ENST00000394175.6;ENST00000309481.11;ENST00000477054.6;ENST00000394179.5;ENST00000520542.5;ENST00000418519.5;ENST00000523371.5;ENST00000524039.5;ENST00000468820.1;ENST00000464556.1	17.715	13.758	12.791	0.931(8923)	0.886(622)	0.972(16891)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
TFDP2_LS031	chr3:142005544|142149183:-	TFDP2	transcription factor Dp-2	protein coding gene	no	ENST00000475734.5	0.033	0.033	0.631	0.408(3905)	0.446(313)	0.071(1236)	non tumor-specific	exon_skip	yes
RNF123_LS029	chr3:49705182|49705534:+	RNF123	ring finger protein 123	protein coding gene	no	ENST00000327697.10;ENST00000432042.5	25.086	19.580	20.949	0.949(9091)	0.983(690)	0.979(17010)	non tumor-specific	alt_5prime	yes
ADAD2_LS019	chr16:84196044|84196127:+	ADAD2	adenosine deaminase domain containing 2	protein coding gene	no	ENST00000268624.7;ENST00000315906.9;ENST00000564430.1	7.164	1.453	1.577	0.071(676)	0.077(54)	0.547(9511)	non tumor-specific	alt_3prime;exon_skip	yes
GSTM5_LS003	chr1:109712348|109775072:+	GSTM5	glutathione S-transferase mu 5	protein coding gene	no	ENST00000429410.2	0.258	0.136	1.094	0.036(345)	0.077(54)	0.129(2244)	non tumor-specific	nAS	yes
UN_AC239800.2_UP_LS0020	chr1:143703288|143703464:+	AC239800.2	-	lncRNA gene	no	.	1.896	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P3_LS0002	chr17:64750008|64750405:-	KPNA2P3	karyopherin subunit alpha 2 pseudogene 3	pseudogene	no	.	4.663	2.780	0.000	0.836(8009)	0.772(542)	0(0)	non tumor-specific	nAS	no
UN_AC247036.1_UP_LS0108	chr14:106005301|106122479:+	AC247036.1	-	lncRNA gene	no	.	29.000	7.926	0.000	0.007(68)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MXRA5Y_UP_LS0002	chrY:11954317|11957180:+	MXRA5Y	matrix remodeling associated 5 Y-linked (pseudogene)	pseudogene	no	.	2.819	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DPY19L2_LS021	chr12:63624131|63626469:-	DPY19L2	dpy-19 like 2	protein coding gene	no	ENST00000324472.8	1.678	0.910	1.816	0.161(1543)	0.358(251)	0.569(9886)	non tumor-specific	exon_skip	yes
UN_NUDT8_LS0005	chr11:67629051|67629218:-	NUDT8	nudix hydrolase 8	protein coding gene	no	.	1.051	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_G6PC_LS0006	chr17:42909418|42911006:+	G6PC	glucose-6-phosphatase catalytic subunit	protein coding gene	no	.	17.467	26.840	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC007563.2_LS0021	chr2:216822101|216836527:-	AC007563.2	-	lncRNA gene	no	.	2.818	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
NR2F1-AS1_LS003	chr5:93411509|93423155:-	NR2F1-AS1	NR2F1 antisense RNA 1	lncRNA gene	no	ENST00000606165.5	0.314	0.147	1.128	0.442(4233)	0.578(406)	0.456(7924)	non tumor-specific	nAS	yes
GPCPD1_LS026	chr20:5584322|5593327:-	GPCPD1	glycerophosphocholine phosphodiesterase 1	protein coding gene	no	ENST00000481690.2;ENST00000481690.2;ENST00000481690.2	0.873	0.410	3.884	0.826(7910)	0.88(618)	0.915(15907)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF264_LS0038	chr19:57217625|57218002:+	ZNF264	zinc finger protein 264	protein coding gene	no	.	4.213	1.660	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC098824.1_UP_LS0007	chr2:42921676|42922646:-	AC098824.1	-	pseudogene	no	.	2.411	1.394	0.000	0.018(176)	0.034(24)	0(0)	non tumor-specific	nAS	no
KLHL21_LS002	chr1:6593658|6599047:-	KLHL21	kelch like family member 21	protein coding gene	no	.;.	4.152	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PPP2R2B_LS031	chr5:147040805|147055665:-	PPP2R2B	symbol withdrawn, see [HGNC:9305](/data/gene-symbol-report/#!/hgnc_id/HGNC:9305)	protein coding gene	no	ENST00000512011.5	0.722	0.089	1.246	0.083(795)	0.017(12)	0.087(1505)	non tumor-specific	exon_skip;mutex_exons	yes
ZFP69_LS004	chr1:40481854|40489088:+	ZFP69	ZFP69 zinc finger protein	protein coding gene	no	ENST00000372706.5;ENST00000372705.3	4.567	2.012	2.828	0.816(7820)	0.85(597)	0.887(15415)	non tumor-specific	exon_skip	yes
PPIE_LS018	chr1:39743924|39748903:+	PPIE	peptidylprolyl isomerase E	protein coding gene	no	ENST00000470213.5	0.236	0.280	1.333	0.944(9049)	0.913(641)	0.686(11931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DNAJB13_LS0020	chr11:73959025|73959494:+	DNAJB13	DnaJ heat shock protein family (Hsp40) member B13	protein coding gene	no	.	2.844	0.425	0.000	0.031(294)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_HKR1_LS0115	chr19:37363574|37363659:-	HKR1	zinc finger protein 875	protein coding gene	no	.	2.045	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DPP9_LS0060	chr19:4723372|4723705:+	DPP9	dipeptidyl peptidase 9	protein coding gene	no	.	1.214	0.065	0.000	0.009(82)	0.006(4)	0(0)	non tumor-specific	nAS	no
CACNA1C_LS040	chr12:2612013|2633629:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000347598.8;ENST00000399629.5;ENST00000402845.7;ENST00000399603.5;ENST00000399617.5;ENST00000406454.7	0.746	0.421	2.088	0.241(2313)	0.313(220)	0.671(11663)	non tumor-specific	exon_skip	yes
UN_HLA-DPA3_LS0010	chr6:33134295|33139627:-	HLA-DPA3	major histocompatibility complex, class II, DP alpha 3 (pseudogene)	pseudogene	no	.	2.821	0.381	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	nAS	no
EBF4_LS005	chr20:2706037|2706209:+	EBF4	EBF family member 4	protein coding gene	no	ENST00000449079.7;ENST00000380648.8;ENST00000497450.5;ENST00000342725.9;ENST00000609451.5;ENST00000609967.5;ENST00000469215.1	9.799	8.762	18.820	0.82(7859)	0.917(644)	0.948(16475)	non tumor-specific	alt_3prime	yes
INTS6-AS1_LS018	chr13:51468367|51471838:+	INTS6-AS1	INTS6 antisense RNA 1	lncRNA gene	no	ENST00000594488.5	0.149	0.057	0.623	0.008(72)	0.011(8)	0.012(205)	non tumor-specific	nAS	yes
UN_AP002992.1_LS0004	chr11:68129188|68129850:+	AP002992.1	-	lncRNA gene	no	.	2.517	0.231	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EIF4G2_LS0050	chr11:10801762|10802049:-	EIF4G2	eukaryotic translation initiation factor 4 gamma 2	protein coding gene	no	.	140.683	15.170	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_GATA2_LS0028	chr3:128487076|128491785:-	GATA2	GATA binding protein 2	protein coding gene	no	.	1.410	0.248	0.000	0.006(58)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PLCG2_LS043	chr16:81937903|81938801:+	PLCG2	phospholipase C gamma 2	protein coding gene	no	ENST00000564138.5;ENST00000359376.7;ENST00000567373.5	63.098	29.068	18.694	0.963(9231)	0.991(696)	0.966(16794)	non tumor-specific	alt_3prime	yes
UN_CNOT1_LS0039	chr16:58539955|58541501:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	.	8.578	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SLC20A2_LS027	chr8:42472654|42541821:-	SLC20A2	solute carrier family 20 member 2	protein coding gene	no	ENST00000342228.7	0.017	0.089	0.691	0.589(5645)	0.731(513)	0.179(3108)	non tumor-specific	alt_5prime	yes
UN_AC100782.1_UP_LS0009	chr8:75120707|75324221:-	AC100782.1	-	lncRNA gene	no	.	3.228	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	no
C8A_LS007	chr1:56886167|56906667:+	C8A	complement C8 alpha chain	protein coding gene	no	ENST00000361249.3	67.204	90.703	0.921	0.047(453)	0.091(64)	0.045(785)	non tumor-specific	nAS	yes
UN_ESCO1_LS0014	chr18:21564317|21567980:-	ESCO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein coding gene	no	.	3.337	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
P2RX5-TAX1BP3_LS006	chr17:3681978|3688012:-	P2RX5-TAX1BP3	P2RX5-TAX1BP3 readthrough (NMD candidate)	protein coding gene	no	ENST00000550383.1	12.223	4.204	4.323	0.511(4893)	0.34(239)	0.711(12350)	non tumor-specific	nAS	yes
BEGAIN_LS002	chr14:100539315|100543858:-	BEGAIN	brain enriched guanylate kinase associated	protein coding gene	no	.;.	3.268	0.329	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TARS2_LS0013	chr1:150504435|150504636:+	TARS2	threonyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	.	7.846	1.945	0.000	0.076(727)	0.057(40)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SMG7_LS008	chr1:183472649|183515874:+	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000508461.5;ENST00000419169.5	0.141	0.127	0.949	0.512(4905)	0.537(377)	0.513(8917)	non tumor-specific	exon_skip	yes
MS4A15_LS001	chr11:60757058|60763706:+	MS4A15	membrane spanning 4-domains A15	protein coding gene	no	ENST00000528170.5;ENST00000429322.6;ENST00000405633.3	4.499	2.864	11.912	0.074(707)	0.161(113)	0.041(710)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_HLA-DMB_LS0006	chr6:32934987|32937172:-	HLA-DMB	major histocompatibility complex, class II, DM beta	protein coding gene	no	.	9.445	1.373	0.000	0.038(364)	0.021(15)	0(0)	non tumor-specific	nAS	no
CRYGA_LS002	chr2:208163446|208163548:-	CRYGA	crystallin gamma A	protein coding gene	no	ENST00000304502.4	0.837	0.000	0.887	0.002(18)	0(0)	0.004(61)	non tumor-specific	nAS	yes
UN_TNKS2_UP_LS0007	chr10:91556744|91557607:+	TNKS2	tankyrase 2	protein coding gene	no	.	3.294	0.234	0.000	0.036(348)	0.004(3)	0(0)	non tumor-specific	nAS	no
RACGAP1_LS017	chr12:50002300|50004235:-	RACGAP1	Rac GTPase activating protein 1	protein coding gene	no	ENST00000427314.6;ENST00000312377.9;ENST00000454520.6;ENST00000551016.5;ENST00000547905.5;ENST00000552310.5;ENST00000548158.1;ENST00000550149.5;ENST00000546786.5;ENST00000546595.5;ENST00000551145.5;ENST00000548824.5	15.210	4.119	5.139	0.946(9062)	0.907(637)	0.94(16342)	non tumor-specific	exon_skip;mutex_exons	yes
UN_C15orf48_LS0004	chr15:45434150|45436941:-	C15orf48	chromosome 15 open reading frame 48	protein coding gene	no	.	3.484	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NXPE4_LS0005	chr11:114594769|114595738:-	NXPE4	neurexophilin and PC-esterase domain family member 4	protein coding gene	no	.	1.369	1.765	0.000	0.006(56)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TMPRSS5_LS022	chr11:113699027|113699595:-	TMPRSS5	transmembrane serine protease 5	protein coding gene	no	ENST00000643074.1;ENST00000299882.10;ENST00000545579.6;ENST00000645981.1;ENST00000538955.5;ENST00000544634.5;ENST00000544476.1;ENST00000538091.1	1.984	0.441	2.041	0.121(1158)	0.041(29)	0.709(12322)	non tumor-specific	exon_skip	yes
UN_C11orf65_LS0034	chr11:108347365|108348952:+	C11orf65	chromosome 11 open reading frame 65	protein coding gene	no	.	1.007	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_HNF4GP1_UP_LS0012	chr13:56258581|56291312:-	HNF4GP1	hepatocyte nuclear factor 4 gamma pseudogene 1	pseudogene	no	.	2.130	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
IKZF2_LS003	chr2:213013934|213021993:-	IKZF2	IKAROS family zinc finger 2	protein coding gene	yes	ENST00000342002.6;ENST00000434687.5;ENST00000374319.8;ENST00000453575.5;ENST00000412444.5;ENST00000439848.5;ENST00000374326.7	2.177	1.172	1.588	0.455(4356)	0.564(396)	0.636(11061)	non tumor-specific	exon_skip	yes
LINC00836_LS004	chr10:25653042|25668216:+	LINC00836	long intergenic non-protein coding RNA 836	lncRNA gene	no	ENST00000628907.2;ENST00000628620.1	5.972	0.029	0.948	0.04(388)	0.001(1)	0.036(623)	non tumor-specific	nAS	yes
LSG1_LS012	chr3:194660886|194665557:-	LSG1	large 60S subunit nuclear export GTPase 1	protein coding gene	no	ENST00000427461.1	0.073	0.030	0.821	0.34(3262)	0.332(233)	0.379(6583)	non tumor-specific	exon_skip	yes
UN_CACNA1A_LS0019	chr19:13306950|13307148:+	CACNA1A	calcium voltage-gated channel subunit alpha1 A	protein coding gene	no	.	3.152	1.134	0.000	0.001(13)	0.013(9)	0(0)	non tumor-specific	nAS	no
NPDC1_LS007	chr9:137040984|137041062:-	NPDC1	neural proliferation, differentiation and control 1	protein coding gene	no	ENST00000371600.7;ENST00000371601.4	218.395	147.650	254.733	0.994(9522)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
HTR3A_LS001	chr11:113975392|113977771:+	HTR3A	5-hydroxytryptamine receptor 3A	protein coding gene	no	ENST00000504030.6;ENST00000355556.6;ENST00000375498.6;ENST00000506841.6;ENST00000510849.5	2.438	0.569	1.243	0.161(1539)	0.118(83)	0.182(3161)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC146944.1_UP_LS0020	chr5:70634158|70637353:-	AC146944.1	-	pseudogene	no	.	6.888	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
MPP5_LS015	chr14:67312710|67316832:+	MPP5	ZWINT antisense RNA	protein coding gene	no	ENST00000261681.8;ENST00000555925.5	20.280	25.195	11.264	0.935(8954)	0.983(690)	0.958(16650)	non tumor-specific	exon_skip	yes
UN_MIR3681HG_LS0157	chr2:12570255|12572057:+	MIR3681HG	MIR3681 host gene	lncRNA gene	no	.	4.009	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC105254.2_UP_LS0003	chr4:121109583|121110713:+	AC105254.2	-	pseudogene	no	.	2.453	0.477	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZZEF1_LS035	chr17:4067242|4070684:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	ENST00000381638.6;ENST00000572426.5	7.832	7.280	8.893	0.824(7890)	0.915(642)	0.96(16681)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CASC9_UP_LS0010	chr8:76074732|76082187:-	CASC9	cancer susceptibility 9	lncRNA gene	no	.	1.472	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00869_LS013	chr1:149661089|149665805:+	LINC00869	long intergenic non-protein coding RNA 869	pseudogene	no	ENST00000430442.2	4.199	0.000	0.743	0(4)	0(0)	0.09(1565)	non tumor-specific	nAS	yes
UN_PPIAP22_LS0013	chr21:18858058|18858222:+	PPIAP22	peptidylprolyl isomerase A pseudogene 22	pseudogene	no	.	84.305	48.377	0.000	0.007(66)	0.001(1)	0(0)	non tumor-specific	nAS	no
CALML6_LS012	chr1:1917074|1917147:+	CALML6	calmodulin like 6	protein coding gene	no	ENST00000307786.7;ENST00000378604.3;ENST00000482402.1	0.340	0.336	1.871	0.299(2860)	0.187(131)	0.74(12870)	non tumor-specific	nAS	yes
AL158058.1_LS004	chr14:29408965|29436177:+	AL158058.1	-	lncRNA gene	no	ENST00000549515.1	0.796	0.000	1.019	0.004(35)	0(0)	0.008(144)	non tumor-specific	nAS	yes
TNFRSF19_LS015	chr13:23660490|23667980:+	TNFRSF19	TNF receptor superfamily member 19	protein coding gene	no	ENST00000248484.8;ENST00000403372.6;ENST00000382258.8;ENST00000382263.3	11.088	10.424	2.972	0.758(7263)	0.869(610)	0.777(13514)	non tumor-specific	exon_skip	yes
UN_AL590640.2_UP_LS0038	chr1:27060080|27060182:+	AL590640.2	-	pseudogene	no	.	2.533	0.412	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
GSTZ1_LS016	chr14:77326905|77327912:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000556627.5;ENST00000556627.5	0.138	0.263	0.709	0.124(1187)	0.125(88)	0.138(2397)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_HLA-E_LS0156	chr6:30492825|30492963:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	1.545	0.985	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	nAS	no
XRCC5_LS015	chr2:216130780|216130875:+	XRCC5	X-ray repair cross complementing 5	protein coding gene	yes	ENST00000471649.1	0.295	1.229	0.820	0.123(1183)	0.171(120)	0.147(2561)	non tumor-specific	alt_5prime	yes
PICK1_LS007	chr22:38057587|38057753:+	PICK1	protein interacting with PRKCA 1	protein coding gene	no	ENST00000476157.5;ENST00000426258.5;ENST00000469819.5;ENST00000356976.7;ENST00000466374.1;ENST00000476157.5;ENST00000426258.5;ENST00000469819.5;ENST00000356976.7;ENST00000466374.1	9.723	7.112	12.662	0.986(9448)	0.994(698)	0.973(16920)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_FAM41C_LS0012	chr1:872675|872783:+	FAM41C	family with sequence similarity 41 member C	lncRNA gene	no	.	1.262	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
IGSF1_LS023	chrX:131286048|131286437:-	IGSF1	immunoglobulin superfamily member 1	protein coding gene	no	ENST00000361420.7;ENST00000370903.7;ENST00000370900.5;ENST00000370901.4	6.211	1.228	1.672	0.286(2738)	0.396(278)	0.502(8724)	non tumor-specific	exon_skip;intron_retention	yes
UN_BRCA1_LS0015	chr17:43082572|43090944:-	BRCA1	BRCA1 DNA repair associated	protein coding gene	yes	.	2.713	0.631	0.000	0.061(584)	0.016(11)	0(0)	non tumor-specific	alt_3prime	no
UN_NADSYN1_LS0014	chr11:71473958|71474395:+	NADSYN1	NAD synthetase 1	protein coding gene	no	.	2.727	0.090	0.000	0.01(98)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_BMS1P17_UP_LS0004	chr14:19106237|19293834:+	BMS1P17	BMS1 pseudogene 17	pseudogene	no	.	1.110	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF74_LS0028	chr22:20406407|20406492:-	ZNF74	zinc finger protein 74	protein coding gene	no	.	1.517	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SAMD9L_LS004	chr7:93144833|93145909:-	SAMD9L	sterile alpha motif domain containing 9 like	protein coding gene	yes	.;.	1.041	0.075	0.000	0.001(10)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COX7B2_LS0004	chr4:46845014|46892107:-	COX7B2	cytochrome c oxidase subunit 7B2	protein coding gene	no	.	1.716	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_ERI3_UP_LS0001	chr1:44555707|44742342:-	ERI3	ERI1 exoribonuclease family member 3	protein coding gene	no	.	4.986	2.232	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
TRABD2B_LS005	chr1:47778544|47801473:-	TRABD2B	TraB domain containing 2B	protein coding gene	no	ENST00000435576.2	0.521	0.260	1.203	0.25(2392)	0.41(288)	0.42(7308)	non tumor-specific	exon_skip	yes
FN1_LS069	chr2:215434824|215435655:-	FN1	fibronectin 1	protein coding gene	no	ENST00000421182.5;ENST00000323926.10;ENST00000336916.8;ENST00000357867.8;ENST00000354785.8;ENST00000359671.5;ENST00000446046.5;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000426059.1	115.141	83.972	22.105	0.939(8999)	0.98(688)	0.946(16452)	non tumor-specific	alt_5prime;exon_skip	yes
NKD2_LS012	chr5:1035473|1036257:+	NKD2	NKD inhibitor of WNT signaling pathway 2	protein coding gene	no	ENST00000296849.9;ENST00000274150.4;ENST00000523688.1;ENST00000296849.9;ENST00000274150.4;ENST00000523688.1	11.172	4.796	3.718	0.833(7980)	0.801(562)	0.736(12797)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPRY2_LS0013	chr13:80340217|80340737:+	SPRY2	sprouty RTK signaling antagonist 2	protein coding gene	yes	.	2.149	0.420	0.000	0.01(99)	0.01(7)	0(0)	non tumor-specific	nAS	no
TSPAN18_LS025	chr11:44926757|44930862:+	TSPAN18	tetraspanin 18	protein coding gene	no	ENST00000518429.2;ENST00000518429.2	0.011	0.043	0.770	0.249(2383)	0.302(212)	0.035(607)	non tumor-specific	alt_3prime;exon_skip	yes
JAKMIP2_LS001	chr5:147591686|147601741:-	JAKMIP2	janus kinase and microtubule interacting protein 2	protein coding gene	no	ENST00000616793.4;ENST00000507386.5;ENST00000333010.6	1.505	0.482	3.027	0.199(1910)	0.138(97)	0.486(8451)	non tumor-specific	exon_skip	yes
NCOR1_LS042	chr17:16101757|16108786:-	NCOR1	nuclear receptor corepressor 1	protein coding gene	no	ENST00000268712.7;ENST00000583226.1	0.993	1.429	2.062	0.748(7169)	0.839(589)	0.843(14653)	non tumor-specific	alt_3prime;exon_skip	yes
IFT20_LS010	chr17:28329276|28330111:-	IFT20	intraflagellar transport 20	protein coding gene	no	ENST00000357896.7	0.070	0.258	0.773	0.419(4011)	0.452(317)	0.325(5644)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FAM189A2_LS015	chr9:69385947|69386559:+	FAM189A2	family with sequence similarity 189 member A2	protein coding gene	no	ENST00000469179.2	0.984	0.208	1.645	0.228(2180)	0.415(291)	0.605(10509)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_KRT73-AS1_UP_LS0023	chr12:52428392|52516762:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	3.830	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BRWD1_LS0047	chr21:39304223|39312841:-	BRWD1	bromodomain and WD repeat domain containing 1	protein coding gene	no	.	1.066	0.274	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HAX1_LS0009	chr1:154272776|154274950:+	HAX1	HCLS1 associated protein X-1	protein coding gene	yes	.	2.972	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC012368.1_LS001	chr2:64143346|64201748:+	AC012368.1	-	lncRNA gene	no	ENST00000438115.6	1.498	0.227	1.095	0.008(72)	0.009(6)	0.068(1182)	non tumor-specific	nAS	yes
UN_GIPC1_LS0137	chr19:14484175|14485222:+	GIPC1	GIPC PDZ domain containing family member 1	protein coding gene	no	.	1.324	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CTSLP6_LS005	chr10:79872933|79873034:-	CTSLP6	cathepsin L pseudogene 6	pseudogene	no	ENST00000458273.2	1.906	0.212	0.656	0.001(13)	0.024(17)	0.022(384)	non tumor-specific	nAS	yes
UN_NARS2_LS0010	chr11:78466013|78466087:-	NARS2	asparaginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	.	6.291	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime	no
FAM234A_LS027	chr16:263775|264614:+	FAM234A	family with sequence similarity 234 member A	protein coding gene	no	ENST00000424016.1	0.505	0.401	0.987	0.804(7703)	0.756(531)	0.503(8743)	non tumor-specific	exon_skip	yes
LIMK2_LS030	chr22:31275308|31278297:+	LIMK2	LIM domain kinase 2	protein coding gene	no	ENST00000331728.8;ENST00000333611.8;ENST00000467301.1;ENST00000331728.8;ENST00000333611.8;ENST00000467301.1	59.483	42.879	29.404	0.93(8911)	0.956(671)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SIGLEC10_LS023	chr19:51416950|51417545:-	SIGLEC10	sialic acid binding Ig like lectin 10	protein coding gene	no	ENST00000357375.4;ENST00000357375.4;ENST00000357375.4	0.020	0.006	0.751	0.037(357)	0.021(15)	0.025(432)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CNGB1_LS036	chr16:57962610|57962842:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5;ENST00000311183.8;ENST00000562761.1	3.169	0.000	0.726	0.006(60)	0(0)	0.022(387)	non tumor-specific	nAS	yes
MEG3_LS040	chr14:100857797|100860691:+	MEG3	maternally expressed 3	lncRNA gene	yes	ENST00000650549.1;ENST00000649161.1;ENST00000648123.1;ENST00000521256.1	0.122	0.004	1.678	0.039(369)	0.04(28)	0.418(7258)	non tumor-specific	nAS	yes
UBA1_LS017	chrX:47194024|47198527:+	UBA1	ubiquitin like modifier activating enzyme 1	protein coding gene	no	.;.	1.599	0.318	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
EML1_LS004	chr14:99792902|99850853:+	EML1	EMAP like 1	protein coding gene	no	ENST00000556835.5	0.304	0.013	0.659	0.011(102)	0.007(5)	0.017(295)	non tumor-specific	nAS	yes
UN_GABPB2_LS0042	chr1:151123615|151123944:+	GABPB2	GA binding protein transcription factor subunit beta 2	protein coding gene	no	.	1.763	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLEKHH1_LS0030	chr14:67580805|67580938:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	.	4.095	3.229	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TMEM131L_LS013	chr4:153583672|153584835:+	TMEM131L	transmembrane 131 like	protein coding gene	no	ENST00000409959.7;ENST00000240487.5;ENST00000509565.1	7.001	3.012	4.241	0.809(7751)	0.952(668)	0.865(15028)	non tumor-specific	alt_3prime	yes
COP1_LS009	chr1:176043203|176043810:-	COP1	COP1 E3 ubiquitin ligase	protein coding gene	no	ENST00000461830.6	0.133	0.000	0.582	0.003(27)	0(0)	0.002(31)	non tumor-specific	nAS	yes
UN_BGN_LS0071	chrX:153506858|153507054:-	BGN	biglycan	protein coding gene	no	.	1.713	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
TBC1D17_LS027	chr19:49887834|49888157:+	TBC1D17	TBC1 domain family member 17	protein coding gene	no	ENST00000594984.1	26.027	15.748	18.847	0.975(9346)	0.984(691)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_RPL8_UP_LS0002	chr8:144811076|144813191:-	RPL8	ribosomal protein L8	protein coding gene	no	.	1.825	0.671	0.000	0.169(1617)	0.13(91)	0(0)	non tumor-specific	nAS	no
TTC28_LS019	chr22:28096408|28098915:-	TTC28	tetratricopeptide repeat domain 28	protein coding gene	no	ENST00000612946.4;ENST00000397906.6	8.367	7.401	4.130	0.635(6087)	0.85(597)	0.862(14988)	non tumor-specific	nAS	yes
UN_SP1_LS0005	chr12:53380840|53381659:+	SP1	Sp1 transcription factor	protein coding gene	no	.	1.094	0.179	0.000	0.027(261)	0.013(9)	0(0)	non tumor-specific	alt_5prime	no
ANKS1B_LS041	chr12:99246864|99351976:-	ANKS1B	ankyrin repeat and sterile alpha motif domain containing 1B	protein coding gene	no	ENST00000550157.1	0.303	0.000	0.677	0.001(10)	0(0)	0.017(303)	non tumor-specific	nAS	yes
AC091053.2_LS001	chr11:8679378|8680667:+	AC091053.2	-	lncRNA gene	no	ENST00000534169.1	0.298	0.014	0.332	0.005(45)	0.001(1)	0(1)	non tumor-specific	nAS	yes
UN_SWT1_LS0035	chr1:185257462|185271323:+	SWT1	SWT1 RNA endoribonuclease homolog	protein coding gene	no	.	3.563	0.085	0.000	0.055(527)	0.001(1)	0(0)	non tumor-specific	nAS	no
PIK3C3_LS011	chr18:41990554|41993270:+	PIK3C3	phosphatidylinositol 3-kinase catalytic subunit type 3	protein coding gene	no	ENST00000262039.8;ENST00000639914.1;ENST00000398870.7	20.260	13.849	10.736	0.93(8911)	0.987(693)	0.973(16912)	non tumor-specific	nAS	yes
COL6A3_LS022	chr2:237348663|237350147:-	COL6A3	collagen type VI alpha 3 chain	protein coding gene	no	ENST00000353578.8;ENST00000295550.8;ENST00000491769.1;ENST00000472056.5;ENST00000347401.7;ENST00000409809.5	117.256	77.753	76.128	0.864(8277)	0.973(683)	0.896(15572)	non tumor-specific	alt_3prime	yes
UN_RPSAP68_UP_LS0552	chr21:8401314|8445510:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	107.721	3.044	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_UP_LS0160	chr14:106301627|106723807:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	29.209	1.972	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RBFOX2_LS0012	chr22:35759377|35759888:-	RBFOX2	RNA binding fox-1 homolog 2	protein coding gene	no	.	2.115	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_HHATL_LS0006	chr3:42695016|42696842:-	HHATL	hedgehog acyltransferase like	protein coding gene	no	.	172.387	0.228	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC6A13_LS040	chr12:243813|259851:-	SLC6A13	solute carrier family 6 member 13	protein coding gene	no	ENST00000343164.8;ENST00000536842.5;ENST00000539260.1	3.889	3.565	2.812	0.197(1891)	0.377(265)	0.263(4574)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
SLC4A5_LS008	chr2:74225011|74226957:-	SLC4A5	symbol withdrawn, see [HGNC:11030](/data/gene-symbol-report/#!/hgnc_id/HGNC:11030)	protein coding gene	no	ENST00000425249.6	0.418	0.045	0.763	0.034(330)	0.063(44)	0.189(3282)	non tumor-specific	alt_3prime	yes
CACNA1B_LS029	chr9:138052188|138053846:+	CACNA1B	calcium voltage-gated channel subunit alpha1 B	protein coding gene	no	ENST00000277551.6;ENST00000277549.9;ENST00000371372.5;ENST00000371363.5;ENST00000371355.8;ENST00000371357.5	3.895	1.071	2.887	0.134(1281)	0.033(23)	0.302(5247)	non tumor-specific	nAS	yes
OGDH_LS032	chr7:44697782|44698192:+	OGDH	oxoglutarate dehydrogenase	protein coding gene	no	ENST00000439616.6;ENST00000447398.5;ENST00000449767.5;ENST00000444676.5;ENST00000631326.2;ENST00000222673.5	195.071	156.573	98.193	0.995(9530)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
SPECC1_LS006	chr17:20017605|20017987:+	SPECC1	sperm antigen with calponin homology and coiled-coil domains 1	protein coding gene	no	ENST00000582604.1	0.441	0.096	0.924	0.082(783)	0.019(13)	0.267(4649)	non tumor-specific	nAS	yes
UN_PCBP1_LS0022	chr2:70087977|70088383:-	PCBP1	poly(rC) binding protein 1	protein coding gene	no	.	8.063	3.358	0.000	0.012(112)	0.006(4)	0(0)	non tumor-specific	nAS	no
P4HTM_LS029	chr3:49006187|49006687:+	P4HTM	prolyl 4-hydroxylase, transmembrane	protein coding gene	no	ENST00000383729.8;ENST00000343546.8;ENST00000472301.5;ENST00000484115.5	99.679	55.381	71.446	0.977(9358)	0.986(692)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
GALNT13_LS001	chr2:153872176|153900936:+	GALNT13	polypeptide N-acetylgalactosaminyltransferase 13	protein coding gene	no	ENST00000434213.1	1.033	0.140	0.844	0.037(353)	0.009(6)	0.126(2182)	non tumor-specific	alt_5prime	yes
UN_AL160269.1_LS0013	chr9:96257143|96298416:-	AL160269.1	-	protein coding gene	no	.	1.696	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LDB2_LS030	chr4:16759260|16888674:-	LDB2	LIM domain binding 2	protein coding gene	no	ENST00000504189.1	0.793	1.225	1.185	0.015(141)	0.064(45)	0.464(8065)	non tumor-specific	exon_skip	yes
UN_CDH1_LS0003	chr16:68737893|68738297:+	CDH1	fizzy and cell division cycle 20 related 1	protein coding gene	yes	.	0.759	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
MFN1_LS010	chr3:179367592|179368036:+	MFN1	mitofusin 1	protein coding gene	no	ENST00000471841.5;ENST00000357390.8;ENST00000263969.9;ENST00000474903.1	26.837	15.730	20.843	0.96(9201)	0.984(691)	0.974(16936)	non tumor-specific	exon_skip	yes
NPAS3_LS026	chr14:33797581|33799734:+	NPAS3	neuronal PAS domain protein 3	protein coding gene	no	ENST00000551492.5;ENST00000346562.6;ENST00000548645.5;ENST00000356141.8;ENST00000357798.9	1.980	0.463	1.319	0.248(2376)	0.313(220)	0.398(6925)	non tumor-specific	alt_5prime	yes
UN_FBXO6_LS0012	chr1:11673691|11673784:-	FBXO6	F-box protein 6	protein coding gene	no	.	4.379	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AL627309.1_LS005	chr1:120932|129055:-	AL627309.1	-	lncRNA gene	no	ENST00000477740.5;ENST00000610542.1	0.041	0.031	0.705	0.256(2453)	0.258(181)	0.018(312)	non tumor-specific	nAS	yes
UN_PANK4_LS0007	chr1:2511683|2514002:-	PANK4	pantothenate kinase 4 (inactive)	protein coding gene	no	.	3.924	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_CDIP1_LS0013	chr16:4511728|4511936:+	CDIP1	cell death inducing p53 target 1	protein coding gene	no	.	1.874	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ZDHHC8_LS005	chr22:20139635|20139720:+	ZDHHC8	zinc finger DHHC-type palmitoyltransferase 8	protein coding gene	no	ENST00000436518.5;ENST00000334554.11;ENST00000405930.3	26.568	15.638	37.355	0.969(9288)	0.989(694)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SPATA5L1_LS0012	chr15:45417399|45418562:+	SPATA5L1	spermatogenesis associated 5 like 1	protein coding gene	no	.	3.742	0.255	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
SSC4D_LS002	chr7:76392041|76393387:-	SSC4D	scavenger receptor cysteine rich family member with 4 domains	protein coding gene	no	ENST00000492979.2	0.356	0.237	0.683	0.336(3218)	0.259(182)	0.076(1327)	non tumor-specific	alt_5prime	yes
UN_STPG1_LS0026	chr1:24415904|24416025:+	STPG1	sperm tail PG-rich repeat containing 1	protein coding gene	no	.	0.662	0.172	0.000	0.005(51)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_PHF1_LS0032	chr6:33415144|33415261:+	PHF1	PHD finger protein 1	protein coding gene	no	.	5.508	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_PLAA_LS0009	chr9:26928210|26928308:-	PLAA	phospholipase A2 activating protein	protein coding gene	no	.	6.654	1.356	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
MIF4GD_LS002	chr17:75266967|75267538:-	MIF4GD	MIF4G domain containing	protein coding gene	no	ENST00000325102.12;ENST00000618645.4;ENST00000245551.9;ENST00000579297.5;ENST00000577542.5;ENST00000580571.5;ENST00000578305.5;ENST00000580717.5	71.982	38.114	38.047	0.936(8969)	0.942(661)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_S100A11P1_UP_LS0009	chr7:103153073|103171247:+	S100A11P1	S100A11 pseudogene 1	pseudogene	no	.	1.092	1.053	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAH14_LS051	chr1:225153826|225159329:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000430092.5;ENST00000439375.6	1.876	0.000	0.723	0.001(7)	0(0)	0.008(145)	non tumor-specific	alt_3prime;exon_skip	yes
RBMX_LS013	chrX:136876655|136877915:-	RBMX	RNA binding motif protein X-linked	protein coding gene	yes	ENST00000419968.6;ENST00000320676.11;ENST00000562646.5;ENST00000565438.1;ENST00000567262.5	228.806	113.733	122.507	0.995(9534)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_HSDL2_LS0031	chr9:112442094|112469723:-	HSDL2	hydroxysteroid dehydrogenase like 2	protein coding gene	no	.	1.373	0.228	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ENG_LS0009	chr9:127815172|127815196:+	ENG	endoglin	protein coding gene	no	.	9.398	0.353	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRIOBP_LS0142	chr22:37769375|37771606:+	TRIOBP	TRIO and F-actin binding protein	protein coding gene	no	.	8.763	0.471	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC1A2_LS009	chr11:35265758|35286757:-	SLC1A2	solute carrier family 1 member 2	protein coding gene	no	ENST00000647076.1;ENST00000606205.6	0.289	0.076	1.092	0.05(479)	0.013(9)	0.05(877)	non tumor-specific	exon_skip	yes
CYP4F2_LS019	chr19:15895650|15898026:-	CYP4F2	cytochrome P450 family 4 subfamily F member 2	protein coding gene	no	ENST00000392846.7	0.279	0.373	0.835	0.03(285)	0.125(88)	0.006(109)	non tumor-specific	exon_skip	yes
ZNF20_LS002	chr19:12130699|12135500:-	ZNF20	zinc finger protein 121	protein coding gene	no	ENST00000480770.5	0.811	0.513	0.832	0.218(2084)	0.343(241)	0.364(6323)	non tumor-specific	nAS	yes
UN_COL4A2_LS0006	chr13:110408707|110409360:-	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	.	2.430	0.219	0.000	0.019(178)	0.007(5)	0(0)	non tumor-specific	nAS	no
CLDN5_LS002	chr22:19524542|19526517:-	CLDN5	claudin 5	protein coding gene	no	ENST00000406028.1	0.022	0.005	0.708	0.11(1056)	0.255(179)	0.068(1177)	non tumor-specific	nAS	yes
MYLK3_LS009	chr16:46729687|46730593:-	MYLK3	myosin light chain kinase 3	protein coding gene	no	ENST00000394809.8;ENST00000536476.5;ENST00000564731.5	1.768	2.799	1.401	0.063(601)	0.211(148)	0.249(4327)	non tumor-specific	exon_skip	yes
UN_RABL6_LS0102	chr9:136840714|136840900:-	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	.	1.549	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MEF2C_LS036	chr5:88823927|88883049:-	MEF2C	myocyte enhancer factor 2C	protein coding gene	yes	ENST00000637732.1;ENST00000637732.1	1.411	0.276	0.786	0.003(26)	0.003(2)	0.242(4200)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MMP28_LS0043	chr17:35793837|35794551:-	MMP28	matrix metallopeptidase 28	protein coding gene	no	.	1.960	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRERF1_LS0031	chr6:42269848|42270321:-	TRERF1	transcriptional regulating factor 1	protein coding gene	no	.	1.429	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AL096711.2_LS0001	chr6:127463709|127464096:+	AL096711.2	-	protein coding gene	no	.	2.142	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DPY19L3_LS032	chr19:32480557|32480705:+	DPY19L3	dpy-19 like C-mannosyltransferase 3	protein coding gene	no	ENST00000586987.5	0.657	0.103	0.605	0.048(459)	0.026(18)	0.034(583)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL671883.2_UP_LS0015	chr6:31269023|31354097:+	AL671883.2	-	pseudogene	no	.	39.889	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC8C-DT_LS003	chr1:89595222|89598040:-	LRRC8C-DT	LRRC8C divergent transcript	lncRNA gene	no	ENST00000443562.1	1.552	0.261	0.712	0.035(337)	0.023(16)	0.035(606)	non tumor-specific	nAS	yes
UN_RNU4-77P_UP_LS0039	chr1:233702880|233704956:-	RNU4-77P	RNA, U4 small nuclear 77, pseudogene	small non-coding RNA gene	no	.	3.017	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C1GALT1_UP_LS0045	chr7:7103346|7107807:+	C1GALT1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein coding gene	no	.	2.579	0.587	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_STK39_LS0047	chr2:168167403|168181978:-	STK39	serine/threonine kinase 39	protein coding gene	no	.	4.052	0.170	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CRIP2_LS015	chr14:105479047|105479125:+	CRIP2	cysteine rich protein 2	protein coding gene	no	ENST00000483017.7;ENST00000329146.8;ENST00000538259.2;ENST00000551836.5;ENST00000547643.5;ENST00000552643.5;ENST00000548989.5;ENST00000548309.1	244.520	158.432	333.247	0.992(9505)	0.997(700)	0.979(17010)	non tumor-specific	alt_3prime	yes
UN_SLC35F3_UP_LS0004	chr1:233679993|233681444:+	SLC35F3	solute carrier family 35 member F3	protein coding gene	no	.	3.125	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC4A3_LS0005	chr2:219628818|219628976:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	.	1.595	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_C1orf112_LS0063	chr1:169847311|169853705:-	C1orf112	chromosome 1 open reading frame 112	protein coding gene	no	.	1.448	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SHANK2_LS036	chr11:70952821|71056481:-	SHANK2	SH3 and multiple ankyrin repeat domains 2	protein coding gene	no	ENST00000458632.2	0.184	0.087	0.677	0.014(132)	0.019(13)	0.003(50)	non tumor-specific	nAS	yes
SLC26A11_LS042	chr17:80248674|80251329:+	SLC26A11	solute carrier family 26 member 11	protein coding gene	no	ENST00000575019.1;ENST00000575019.1;ENST00000575019.1	0.375	0.230	1.101	0.583(5587)	0.55(386)	0.445(7740)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CFAP58_LS015	chr10:104403840|104406689:+	CFAP58	cilia and flagella associated protein 58	protein coding gene	no	ENST00000369704.7	2.721	1.876	1.435	0.074(713)	0.197(138)	0.686(11918)	non tumor-specific	exon_skip	yes
UN_SLC4A8_LS0024	chr12:51450779|51450876:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	.	4.015	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_AP002990.1_LS0171	chr11:62572692|62572727:+	AP002990.1	-	protein coding gene	no	.	2.597	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC45A1_UP_LS0010	chr1:8240123|8244190:+	SLC45A1	solute carrier family 45 member 1	protein coding gene	no	.	2.328	0.707	0.000	0.054(513)	0.066(46)	0(0)	non tumor-specific	nAS	no
UN_FAXC_LS0019	chr6:99329080|99333351:-	FAXC	failed axon connections homolog, metaxin like GST domain containing	protein coding gene	no	.	2.068	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GCSAML_LS006	chr1:247527054|247538676:+	GCSAML	germinal center associated signaling and motility like	protein coding gene	no	ENST00000366491.6	0.307	0.873	0.833	0.002(18)	0.004(3)	0.006(106)	non tumor-specific	exon_skip	yes
UN_MXD4_LS0074	chr4:2250322|2250379:+	MXD4	MAX dimerization protein 4	protein coding gene	no	.	3.910	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
SEC14L1_LS201	chr17:77215844|77215985:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	4.843	1.075	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
SMG8_LS005	chr17:59212486|59212729:+	SMG8	SMG8 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000543872.6;ENST00000300917.9;ENST00000580498.5;ENST00000582469.1;ENST00000580798.1	27.685	14.410	9.852	0.978(9373)	0.994(698)	0.969(16851)	non tumor-specific	nAS	yes
GLRA4_LS006	chrX:103722292|103723856:-	GLRA4	glycine receptor alpha 4 (pseudogene)	protein coding gene	no	ENST00000372617.4;ENST00000436213.5;ENST00000480725.1	4.724	0.611	1.144	0.011(106)	0.091(64)	0.295(5126)	non tumor-specific	exon_skip	yes
TRAPPC9_LS002	chr8:139732059|139885879:-	TRAPPC9	trafficking protein particle complex 9	protein coding gene	no	.;.	4.438	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PLOD2_LS0028	chr3:146102852|146104283:-	PLOD2	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein coding gene	no	.	4.556	0.042	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
GSPT1_LS012	chr16:11886931|11887570:-	GSPT1	G1 to S phase transition 1	protein coding gene	no	ENST00000434724.6;ENST00000439887.6;ENST00000565267.5;ENST00000563468.5;ENST00000420576.6	121.169	70.716	68.796	0.993(9510)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CHMP4B_LS002	chr20:33848644|33850952:+	CHMP4B	charged multivesicular body protein 4B	protein coding gene	no	ENST00000217402.2	758.303	428.678	369.854	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SP9_LS001	chr2:174335113|174336107:+	SP9	Sp9 transcription factor	protein coding gene	no	ENST00000394967.2	0.763	0.354	2.329	0.105(1003)	0.038(27)	0.114(1983)	non tumor-specific	nAS	yes
UN_UBC_LS0272	chr12:124912349|124912409:-	UBC	ubiquitin C	protein coding gene	no	.	225.008	24.103	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NRGN_LS0006	chr11:124743319|124743825:-	NRGN	neurogranin	protein coding gene	no	.	0.789	0.752	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
BCRP6_LS001	chr22:21290846|21291566:-	BCRP6	BCR pseudogene 6	pseudogene	no	ENST00000510112.1	1.166	0.135	0.660	0.022(214)	0.009(6)	0.012(203)	non tumor-specific	nAS	yes
UN_AC024597.1_UP_LS0008	chr10:62266035|62289521:+	AC024597.1	-	lncRNA gene	no	.	3.024	0.296	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
TTC17_LS021	chr11:43407577|43414590:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	ENST00000299240.10;ENST00000039989.8;ENST00000526774.5	57.060	34.964	36.426	0.978(9367)	0.991(696)	0.979(17018)	non tumor-specific	mutex_exons	yes
STK4_LS006	chr20:44972158|44973301:+	STK4	serine/threonine kinase 4	protein coding gene	no	ENST00000487587.2;ENST00000487587.2	0.585	0.338	0.738	0.211(2026)	0.207(145)	0.221(3837)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF93_LS003	chr19:19901091|19914734:+	ZNF93	zinc finger protein 93	protein coding gene	no	ENST00000589903.1	0.312	0.167	0.597	0.058(560)	0.043(30)	0.022(381)	non tumor-specific	exon_skip;mutex_exons	yes
TSSC2_LS008	chr11:3395888|3397089:+	TSSC2	tumor suppressing subtransferable candidate 2 (pseudogene)	pseudogene	no	ENST00000526488.5	0.344	0.000	0.737	0(3)	0(0)	0.002(33)	non tumor-specific	nAS	yes
HMBS_LS008	chr11:119085066|119088635:+	HMBS	hydroxymethylbilane synthase	protein coding gene	no	ENST00000542044.5;ENST00000535793.5;ENST00000543090.5;ENST00000534956.2;ENST00000542044.5;ENST00000535793.5;ENST00000543090.5;ENST00000534956.2	0.100	0.137	1.239	0.658(6303)	0.601(422)	0.655(11387)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC010186.4_LS0008	chr12:9647989|9653683:+	AC010186.4	-	lncRNA gene	no	.	1.820	0.111	0.000	0.023(219)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHRNE_LS005	chr17:4899582|4900990:-	CHRNE	cholinergic receptor nicotinic epsilon subunit	protein coding gene	no	.;.;.	1.315	0.307	0.000	0.034(322)	0.026(18)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IGKV1-27_UP_LS0009	chr2:89222008|89245518:-	IGKV1-27	immunoglobulin kappa variable 1-27	no	no	.	916.639	194.617	0.000	0.008(80)	0.011(8)	0(0)	non tumor-specific	nAS	no
SORBS2_LS022	chr4:185635411|185638877:-	SORBS2	sorbin and SH3 domain containing 2	protein coding gene	no	ENST00000437304.6;ENST00000319471.13;ENST00000319454.10;ENST00000498125.5	1.349	4.543	6.163	0.536(5133)	0.917(644)	0.807(14024)	non tumor-specific	exon_skip	yes
UN_TTLL4_LS0021	chr2:218747194|218747294:+	TTLL4	tubulin tyrosine ligase like 4	protein coding gene	no	.	1.984	0.000	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_SLC2A3_LS0001	chr12:7919564|7919689:+	SLC2A3	solute carrier family 2 member 3	protein coding gene	no	.	6.840	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ETS2_UP_LS0018	chr21:38784929|38786357:+	ETS2	ETS proto-oncogene 2, transcription factor	protein coding gene	yes	.	1.928	0.265	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RGPD6_LS027	chr2:110568075|110576953:-	RGPD6	RANBP2 like and GRIP domain containing 6	protein coding gene	no	ENST00000490990.1	0.359	0.185	0.000	0.084(802)	0.095(67)	0(0)	non tumor-specific	exon_skip	yes
TCP10_LS008	chr6:167378092|167384166:-	TCP10	t-complex 10 like 3, pseudogene	protein coding gene	no	ENST00000460930.2	0.401	0.000	0.726	0.001(11)	0(0)	0.002(37)	non tumor-specific	nAS	yes
DCAF4_LS018	chr14:72946027|72955523:+	DCAF4	DDB1 and CUL4 associated factor 4	protein coding gene	no	ENST00000353777.7	0.029	0.000	0.665	0.051(489)	0.031(22)	0.023(393)	non tumor-specific	nAS	yes
UN_CAPNS1_LS0062	chr19:36149861|36149956:-	CAPNS1	calpain small subunit 1	protein coding gene	no	.	7.728	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
PDE6C_LS016	chr10:93655860|93658901:+	PDE6C	phosphodiesterase 6C	protein coding gene	no	ENST00000371447.3	4.284	0.000	0.732	0(3)	0(0)	0.012(208)	non tumor-specific	nAS	yes
LINC02280_LS001	chr14:104664109|104664733:-	LINC02280	long intergenic non-protein coding RNA 2280	lncRNA gene	no	ENST00000564585.1	0.268	0.011	0.723	0.029(281)	0.006(4)	0.014(250)	non tumor-specific	nAS	yes
ISL1_LS004	chr5:51387749|51389646:+	ISL1	ISL LIM homeobox 1	protein coding gene	no	ENST00000230658.11;ENST00000511384.1;ENST00000505475.3	6.835	2.002	2.032	0.233(2234)	0.222(156)	0.261(4534)	non tumor-specific	nAS	yes
UN_CH17-340M24.3_LS0006	chrX:154427195|154428393:-	CH17-340M24.3	-	lncRNA gene	no	.	1.627	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CHRNB1_LS004	chr17:7446113|7446398:+	CHRNB1	cholinergic receptor nicotinic beta 1 subunit	protein coding gene	no	ENST00000572857.5	0.068	0.031	0.905	0.049(472)	0.048(34)	0.087(1514)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_INTS8_LS0020	chr8:94849532|94851553:+	INTS8	integrator complex subunit 8	protein coding gene	yes	.	3.873	0.337	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_YTHDC1_LS0030	chr4:68337180|68337238:-	YTHDC1	YTH domain containing 1	protein coding gene	no	.	15.418	2.207	0.000	0.01(98)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ABCA6_LS0018	chr17:69112269|69113222:-	ABCA6	ATP binding cassette subfamily A member 6	protein coding gene	no	.	1.520	0.460	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CELA3B_LS006	chr1:21983830|21984189:+	CELA3B	chymotrypsin like elastase 3B	protein coding gene	no	ENST00000337107.10;ENST00000400277.2	29.439	35.560	5.682	0.025(241)	0.027(19)	0.585(10166)	non tumor-specific	alt_5prime	yes
BCR_LS010	chr22:23253980|23260950:+	BCR	BCR activator of RhoGEF and GTPase	protein coding gene	yes	ENST00000479188.5;ENST00000305877.12;ENST00000359540.7;ENST00000480973.1;ENST00000427791.1	58.321	38.905	37.850	0.987(9460)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_AC233724.10_UP_LS0013	chr5:18664434|18672042:-	AC233724.10	-	pseudogene	no	.	2.379	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACOT11_LS0038	chr1:54601068|54601269:+	ACOT11	acyl-CoA thioesterase 11	protein coding gene	no	.	2.467	0.733	0.000	0.026(249)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
MEI1_LS022	chr22:41758547|41759349:+	MEI1	meiotic double-stranded break formation protein 1	protein coding gene	no	ENST00000492484.5	0.057	0.000	0.703	0.002(20)	0(0)	0.004(75)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC097625.1_LS0001	chrX:15561341|15564024:-	AC097625.1	-	protein coding gene	no	.	1.506	0.025	0.000	0.008(78)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_ZNF83_LS0094	chr19:52613702|52613955:+	ZNF83	zinc finger protein 83	protein coding gene	no	.	4.363	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAIM2_LS0025	chr12:49891114|49891660:-	FAIM2	Fas apoptotic inhibitory molecule 2	protein coding gene	no	.	3.274	0.464	0.000	0.05(476)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
GLYATL1P2_LS002	chr11:58885024|58892662:+	GLYATL1P2	glycine-N-acyltransferase like 1 pseudogene 2	pseudogene	no	ENST00000529451.1	0.960	0.641	0.814	0.023(220)	0.08(56)	0.037(635)	non tumor-specific	nAS	yes
PCNT_LS067	chr21:46444821|46445284:+	PCNT	pericentrin	protein coding gene	no	ENST00000359568.9;ENST00000480896.5	42.337	17.980	52.009	0.979(9383)	0.983(690)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ARSJ_LS012	chr4:113970947|113979456:-	ARSJ	arylsulfatase family member J	protein coding gene	no	.;.	0.259	0.024	0.000	0(4)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
RCSD1_LS014	chr1:167690120|167694099:+	RCSD1	RCSD domain containing 1	protein coding gene	no	ENST00000537350.5;ENST00000367854.7	20.836	11.813	7.609	0.889(8517)	0.98(688)	0.933(16224)	non tumor-specific	exon_skip	yes
UBXN11_LS031	chr1:26301053|26301694:-	UBXN11	UBX domain protein 11	protein coding gene	no	ENST00000374215.5;ENST00000423664.5	0.069	0.087	2.188	0.716(6858)	0.672(472)	0.824(14318)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ZNF98_LS0030	chr19:22503903|22514364:-	ZNF98	zinc finger protein 98	protein coding gene	no	.	1.069	0.244	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ATF7IP_LS019	chr12:14425473|14434340:+	ATF7IP	activating transcription factor 7 interacting protein	protein coding gene	no	ENST00000539659.5;ENST00000543189.5;ENST00000536444.5	1.458	0.866	4.418	0.856(8200)	0.896(629)	0.937(16295)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC074286.1_LS0001	chr2:176992966|176996297:-	AC074286.1	-	lncRNA gene	no	.	1.898	0.159	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
YPEL3_LS023	chr16:30095434|30096616:-	YPEL3	yippee like 3	protein coding gene	yes	ENST00000566595.5	0.110	0.062	0.782	0.473(4529)	0.433(304)	0.109(1888)	non tumor-specific	alt_5prime	yes
HK1_LS007	chr10:69295680|69343827:+	HK1	potassium voltage-gated channel subfamily A member 4	protein coding gene	no	ENST00000436817.6;ENST00000450646.6;ENST00000448642.6;ENST00000464803.6;ENST00000476368.6;ENST00000643399.2;ENST00000483054.5	0.629	0.020	0.844	0.024(229)	0.006(4)	0.082(1433)	non tumor-specific	exon_skip	yes
RSBN1_LS002	chr1:113767207|113767955:-	RSBN1	round spermatid basic protein 1	protein coding gene	no	ENST00000369581.2	0.085	0.093	0.664	0.482(4619)	0.668(469)	0.06(1040)	non tumor-specific	nAS	yes
UN_AP000679.1_UP_LS0019	chr11:119832863|119833020:+	AP000679.1	-	lncRNA gene	no	.	1.320	0.543	0.000	0.004(41)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_INPP5B_LS0069	chr1:37943669|37945756:-	INPP5B	inositol polyphosphate-5-phosphatase B	protein coding gene	no	.	0.908	0.322	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
CABLES2_LS013	chr20:62396592|62406915:-	CABLES2	Cdk5 and Abl enzyme substrate 2	protein coding gene	no	ENST00000279101.9	1.731	0.843	2.322	0.858(8223)	0.821(576)	0.88(15301)	non tumor-specific	nAS	yes
UN_TIMM8A_LS0004	chrX:101348401|101348593:-	TIMM8A	translocase of inner mitochondrial membrane 8A	protein coding gene	no	.	1.158	0.064	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
GABRE_LS005	chrX:151955567|151955708:-	GABRE	gamma-aminobutyric acid type A receptor subunit epsilon	protein coding gene	no	ENST00000370328.3;ENST00000483564.5;ENST00000486255.1;ENST00000489333.1;ENST00000462018.1	7.800	2.178	21.045	0.802(7682)	0.903(634)	0.912(15854)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL356270.1_LS0002	chr1:86571426|86584969:-	AL356270.1	-	lncRNA gene	no	.	2.513	0.977	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
TP53I11_LS055	chr11:44941077|44949973:-	TP53I11	tumor protein p53 inducible protein 11	protein coding gene	no	ENST00000533940.5	0.129	0.050	0.693	0.006(58)	0.009(6)	0.069(1197)	non tumor-specific	exon_skip	yes
UN_COL7A1_UP_LS0001	chr3:48595304|48595523:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	.	0.979	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR663AHG_UP_LS0023	chr20:28565400|28586299:-	MIR663AHG	MIR663A host gene	lncRNA gene	no	.	2.373	0.919	0.000	0.089(851)	0.115(81)	0(0)	non tumor-specific	nAS	no
UN_FN1_LS0093	chr2:215368022|215371938:+	FN1	fibronectin 1	protein coding gene	no	.	2.273	1.194	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
RAPGEF2_LS016	chr4:159282640|159304342:+	RAPGEF2	Rap guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000514565.1	0.025	0.008	0.912	0.293(2804)	0.373(262)	0.092(1594)	non tumor-specific	nAS	yes
ZNF225_LS005	chr19:44113569|44115760:+	ZNF225	zinc finger protein 225	protein coding gene	no	ENST00000262894.10;ENST00000592780.5;ENST00000262894.10;ENST00000592780.5	1.415	0.949	1.110	0.612(5868)	0.731(513)	0.577(10027)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PTPDC1_LS0008	chr9:94031127|94101566:+	PTPDC1	protein tyrosine phosphatase domain containing 1	protein coding gene	no	.	1.139	0.057	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MFSD12_LS0110	chr19:3551194|3557110:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	0.778	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NSUN7_LS0029	chr4:40799228|40807061:+	NSUN7	NOP2/Sun RNA methyltransferase family member 7	protein coding gene	no	.	1.589	0.237	0.000	0.008(81)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
OSBPL1A_LS012	chr18:24181279|24196125:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	ENST00000319481.7;ENST00000399443.7;ENST00000357041.8	35.762	42.594	40.832	0.949(9091)	0.99(695)	0.969(16836)	non tumor-specific	alt_5prime;exon_skip	yes
USP32_LS039	chr17:60301704|60345481:-	USP32	ubiquitin specific peptidase 32	protein coding gene	no	ENST00000300896.8;ENST00000590133.5;ENST00000393003.7;ENST00000588898.1;ENST00000589761.1	8.004	5.670	6.814	0.887(8502)	0.963(676)	0.958(16659)	non tumor-specific	exon_skip	yes
GRAMD1B_LS030	chr11:123612864|123613455:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	ENST00000638157.1;ENST00000635736.1;ENST00000638086.1;ENST00000456860.6;ENST00000322282.11;ENST00000529750.5;ENST00000532581.5;ENST00000529432.5;ENST00000646146.1;ENST00000450171.2	15.950	20.645	3.500	0.662(6344)	0.711(499)	0.842(14642)	non tumor-specific	nAS	yes
SCN1B_LS004	chr19:35032694|35033712:+	SCN1B	sodium voltage-gated channel beta subunit 1	protein coding gene	no	ENST00000595652.5	0.190	0.149	1.121	0.313(2997)	0.299(210)	0.366(6370)	non tumor-specific	alt_3prime	yes
LINC01229_LS004	chr16:79714887|79795103:+	LINC01229	long intergenic non-protein coding RNA 1229	lncRNA gene	no	ENST00000561510.5	3.233	0.000	0.646	0.001(6)	0(0)	0.011(195)	non tumor-specific	nAS	yes
CLCN5_LS004	chrX:49925314|50042316:+	CLCN5	chloride voltage-gated channel 5	protein coding gene	no	ENST00000376088.7;ENST00000376091.7;ENST00000482218.2	1.767	2.887	1.241	0.639(6118)	0.687(482)	0.589(10237)	non tumor-specific	exon_skip	yes
UN_CHM_LS0033	chrX:86027557|86047111:-	CHM	CHM Rab escort protein	protein coding gene	no	.	1.239	0.240	0.000	0.018(173)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
OR2A1-AS1_LS006	chr7:144311936|144335079:-	OR2A1-AS1	OR2A1 antisense RNA 1	lncRNA gene	no	ENST00000467944.5	1.971	1.705	0.637	0.186(1781)	0.232(163)	0.004(71)	non tumor-specific	nAS	yes
UN_AP3D1_LS0064	chr19:2109344|2109873:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	.	1.384	0.043	0.000	0.005(51)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_UBR2_LS0048	chr6:42670240|42670664:+	UBR2	ubiquitin protein ligase E3 component n-recognin 2	protein coding gene	no	.	5.564	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
KCNAB1_LS018	chr3:156465686|156474734:+	KCNAB1	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein coding gene	no	ENST00000477912.5;ENST00000490337.5;ENST00000471742.5;ENST00000475456.5;ENST00000302490.12;ENST00000489036.5;ENST00000461717.5;ENST00000497291.5	3.318	5.049	7.025	0.365(3494)	0.766(538)	0.821(14271)	non tumor-specific	alt_3prime;exon_skip	yes
PEAR1_LS007	chr1:156904852|156904944:+	PEAR1	platelet endothelial aggregation receptor 1	protein coding gene	no	ENST00000444016.5	0.099	0.010	0.699	0.03(286)	0.098(69)	0.151(2616)	non tumor-specific	exon_skip;intron_retention	yes
SRP14_LS010	chr15:40038394|40038876:-	SRP14	signal recognition particle 14	protein coding gene	no	ENST00000267884.10;ENST00000558527.5;ENST00000558720.5;ENST00000559475.5;ENST00000559081.1	1224.252	717.140	530.845	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC24A2_LS005	chr9:19573469|19576924:-	SLC24A2	solute carrier family 24 member 2	protein coding gene	no	ENST00000341998.6;ENST00000286344.3	6.331	2.306	6.200	0.128(1222)	0.036(25)	0.206(3585)	non tumor-specific	nAS	yes
ITSN1_LS036	chr21:33811222|33813913:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000399353.5;ENST00000381318.7;ENST00000381291.8;ENST00000381285.8;ENST00000399367.7;ENST00000399352.5;ENST00000399355.6;ENST00000399349.5;ENST00000399338.8;ENST00000379960.9;ENST00000419241.1;ENST00000440794.2;ENST00000465143.1	12.602	10.580	21.032	0.981(9395)	0.996(699)	0.975(16948)	non tumor-specific	exon_skip	yes
ANXA6_LS034	chr5:151140243|151141533:-	ANXA6	annexin A6	protein coding gene	no	ENST00000523714.5	0.153	0.094	0.831	0.702(6724)	0.825(579)	0.151(2629)	non tumor-specific	exon_skip	yes
UN_PUM2_LS0056	chr2:20312423|20318526:-	PUM2	pumilio RNA binding family member 2	protein coding gene	no	.	3.349	0.332	0.000	0.004(38)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RARS2_LS0007	chr6:87520252|87521464:-	RARS2	arginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	.	6.242	3.904	0.000	0.153(1464)	0.127(89)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CCL20_LS003	chr2:227813987|227815457:+	CCL20	C-C motif chemokine ligand 20	protein coding gene	no	ENST00000409189.7;ENST00000489160.1	13.809	5.191	1.688	0.702(6724)	0.721(506)	0.341(5928)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC010809.1_UP_LS0003	chr15:33865041|33866562:-	AC010809.1	-	lncRNA gene	no	.	2.778	0.379	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
EFR3A_LS030	chr8:132002706|132003236:+	EFR3A	EFR3 homolog A	protein coding gene	no	ENST00000254624.9;ENST00000637848.1;ENST00000519656.1;ENST00000523074.5;ENST00000521940.1	66.351	52.318	36.219	0.975(9344)	0.99(695)	0.978(17004)	non tumor-specific	nAS	yes
FBXO44_LS023	chr1:11662731|11662852:+	FBXO44	F-box protein 44	protein coding gene	no	ENST00000471895.1	2.240	0.916	3.744	0.648(6211)	0.487(342)	0.907(15771)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_RPF1_LS0003	chr1:84496072|84496244:+	RPF1	ribosome production factor 1 homolog	protein coding gene	no	.	13.103	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_AC073107.1_LS0094	chr7:65741121|65750883:-	AC073107.1	-	pseudogene	no	.	2.899	1.383	0.000	0.375(3595)	0.434(305)	0(0)	non tumor-specific	nAS	no
UN_CSPP1_LS0070	chr8:67190759|67192098:+	CSPP1	centrosome and spindle pole associated protein 1	protein coding gene	no	.	1.745	0.288	0.000	0.008(73)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RNU6-795P_UP_LS0003	chr10:38065946|38066507:-	RNU6-795P	RNA, U6 small nuclear 795, pseudogene	small non-coding RNA gene	no	.	1.449	0.448	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBA7_LS019	chr3:49810183|49810752:-	UBA7	ubiquitin like modifier activating enzyme 7	protein coding gene	no	.;.	1.390	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ACOXL_LS0028	chr2:111092558|111092865:+	ACOXL	acyl-CoA oxidase like	protein coding gene	no	.	1.797	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
C1orf220_LS001	chr1:178542885|178544875:+	C1orf220	chromosome 1 putative open reading frame 220	lncRNA gene	no	ENST00000367638.1	0.212	0.055	0.659	0.003(24)	0.003(2)	0.015(264)	non tumor-specific	nAS	yes
CNKSR2_LS026	chrX:21609617|21648831:+	CNKSR2	connector enhancer of kinase suppressor of Ras 2	protein coding gene	no	ENST00000425654.7;ENST00000645245.1;ENST00000644585.1;ENST00000644295.1;ENST00000379510.4;ENST00000647532.1;ENST00000644075.1;ENST00000643156.1;ENST00000642853.1;ENST00000645539.1;ENST00000646690.1	3.407	2.659	1.593	0.245(2344)	0.333(234)	0.561(9750)	non tumor-specific	nAS	yes
AC010422.3_LS001	chr19:12643946|12646493:-	AC010422.3	-	protein coding gene	no	ENST00000597692.1	9.580	7.282	0.643	0.212(2035)	0.198(139)	0.129(2236)	non tumor-specific	nAS	yes
UN_DOCK4_LS0006	chr7:111739477|111741540:-	DOCK4	dedicator of cytokinesis 4	protein coding gene	no	.	1.201	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
OR5AH1P_LS001	chr19:56690745|56709799:+	OR5AH1P	olfactory receptor family 5 subfamily AH member 1 pseudogene	pseudogene	no	ENST00000597822.5	0.273	0.315	1.032	0.001(5)	0.001(1)	0.016(271)	non tumor-specific	nAS	yes
UN_EIF2AK4_LS0013	chr15:39971969|39972908:+	EIF2AK4	eukaryotic translation initiation factor 2 alpha kinase 4	protein coding gene	no	.	1.100	0.151	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
AIF1_LS007	chr6:31616506|31616816:+	AIF1	allograft inflammatory factor 1	protein coding gene	yes	ENST00000376059.7;ENST00000337917.11;ENST00000466820.1;ENST00000376049.4	158.420	69.430	46.558	0.964(9236)	0.962(675)	0.96(16680)	non tumor-specific	nAS	yes
SEMA6D_LS002	chr15:47185772|47241240:+	SEMA6D	semaphorin 6D	protein coding gene	no	ENST00000559184.5	0.071	0.000	0.779	0(3)	0(0)	0.001(9)	non tumor-specific	nAS	yes
CFAP52_LS006	chr17:9576765|9586702:+	CFAP52	cilia and flagella associated protein 52	protein coding gene	no	ENST00000396219.7;ENST00000396219.7	0.410	0.016	0.857	0.03(289)	0.08(56)	0.03(529)	non tumor-specific	alt_3prime;exon_skip	yes
DYRK2_LS001	chr12:67648414|67657106:+	DYRK2	dual specificity tyrosine phosphorylation regulated kinase 2	protein coding gene	no	ENST00000543747.1	0.004	0.002	0.622	0.277(2652)	0.229(161)	0.007(113)	non tumor-specific	exon_skip	yes
UN_TC2N_LS0031	chr14:91813825|91836697:-	TC2N	tandem C2 domains, nuclear	protein coding gene	no	.	2.635	0.192	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PDRG1_LS0004	chr20:31945484|31945617:+	PDRG1	p53 and DNA damage regulated 1	protein coding gene	no	.	2.418	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC140481.3_LS0002	chr2:130685356|130685903:+	AC140481.3	-	lncRNA gene	no	.	2.782	0.677	0.000	0.01(98)	0.003(2)	0(0)	non tumor-specific	nAS	no
MUC4_LS139	chr3:195780025|195783242:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	13.624	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
GTF2H3_LS018	chr12:123655824|123659430:+	GTF2H3	general transcription factor IIH subunit 3	protein coding gene	no	ENST00000543415.5	0.073	0.091	0.876	0.584(5595)	0.57(400)	0.438(7612)	non tumor-specific	alt_3prime;mutex_exons	yes
METTL26_LS006	chr16:634797|635518:-	METTL26	methyltransferase like 26	protein coding gene	no	ENST00000565163.5;ENST00000565163.5	0.103	0.087	0.777	0.863(8265)	0.88(618)	0.33(5740)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AP003071.2_UP_LS0008	chr11:69232968|69234881:-	AP003071.2	-	lncRNA gene	no	.	5.912	0.000	0.000	0.006(61)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ANKRD33B_LS0011	chr5:10619378|10638028:+	ANKRD33B	ankyrin repeat domain 33B	protein coding gene	no	.	2.159	0.269	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SOGA1_LS0096	chr20:36784358|36786323:-	SOGA1	suppressor of glucose, autophagy associated 1	protein coding gene	no	.	2.161	0.174	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
DPY19L1_LS023	chr7:35011450|35013568:-	DPY19L1	dpy-19 like C-mannosyltransferase 1	protein coding gene	no	ENST00000638088.1;ENST00000310974.8;ENST00000481923.1	14.636	8.434	5.016	0.861(8254)	0.947(665)	0.923(16049)	non tumor-specific	nAS	yes
NBPF20_LS061	chr1:145395141|145399049:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6;ENST00000622803.4;ENST00000594479.7	9.034	3.792	0.757	0.286(2739)	0.298(209)	0.273(4740)	non tumor-specific	nAS	yes
KCNA2_LS002	chr1:110593928|110602030:-	KCNA2	potassium voltage-gated channel subfamily A member 2	protein coding gene	no	ENST00000369770.7	0.621	0.000	0.753	0.002(18)	0(0)	0.009(148)	non tumor-specific	nAS	yes
UN_SLC35E2A_LS0006	chr1:1729425|1729932:+	SLC35E2A	solute carrier family 35 member E2A	protein coding gene	no	.	7.155	0.346	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ATG2B_LS0013	chr14:96304600|96305589:-	ATG2B	autophagy related 2B	protein coding gene	no	.	2.832	0.768	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
HCFC1_LS029	chrX:153962306|153963225:-	HCFC1	host cell factor C1	protein coding gene	no	ENST00000310441.11;ENST00000369984.4	26.447	13.013	9.733	0.901(8637)	0.943(662)	0.966(16783)	non tumor-specific	nAS	yes
UN_AL132800.1_UP_LS0010	chr14:24445572|24501560:+	AL132800.1	-	lncRNA gene	no	.	3.196	1.585	0.000	0.175(1673)	0.276(194)	0(0)	non tumor-specific	nAS	no
UN_IER5_LS0010	chr1:181089321|181089490:-	IER5	immediate early response 5	protein coding gene	no	.	1.354	0.990	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CDC25B_LS0028	chr20:3804885|3804985:-	CDC25B	cell division cycle 25B	protein coding gene	no	.	1.825	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL360181.3_LS0006	chr10:133392136|133395713:+	AL360181.3	-	protein coding gene	no	.	3.663	0.362	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02484_LS004	chr4:34125862|34259087:-	LINC02484	long intergenic non-protein coding RNA 2484	lncRNA gene	no	ENST00000513843.5;ENST00000514877.1	2.523	0.436	2.448	0.054(522)	0.09(63)	0.013(222)	non tumor-specific	nAS	yes
NECTIN1_LS009	chr11:119677219|119677555:-	NECTIN1	nectin cell adhesion molecule 1	protein coding gene	no	ENST00000341398.6;ENST00000264025.7;ENST00000340882.2;ENST00000532197.1;ENST00000524510.1	44.699	22.059	6.976	0.979(9380)	0.976(685)	0.957(16640)	non tumor-specific	alt_5prime;intron_retention	yes
SENP2_LS020	chr3:185617611|185619299:+	SENP2	SUMO specific peptidase 2	protein coding gene	no	ENST00000296257.9;ENST00000413407.5;ENST00000483005.1	31.561	20.890	25.073	0.988(9464)	0.996(699)	0.979(17009)	non tumor-specific	exon_skip	yes
UN_AC025171.3_UP_LS0006	chr5:42979400|42979952:+	AC025171.3	-	lncRNA gene	no	.	3.224	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BHMT2_LS001	chr5:79069815|79071093:+	BHMT2	betaine--homocysteine S-methyltransferase 2	protein coding gene	no	ENST00000518666.5	0.047	0.028	0.680	0.037(356)	0.13(91)	0.012(211)	non tumor-specific	exon_skip	yes
SLC4A11_LS016	chr20:3231476|3233514:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	ENST00000644692.1	2.010	0.035	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	alt_3prime	yes
CDA_LS006	chr1:20605039|20613842:+	CDA	cytidine deaminase	protein coding gene	no	ENST00000375071.3	22.271	24.377	10.283	0.958(9174)	0.973(683)	0.953(16558)	non tumor-specific	exon_skip	yes
UN_SCN10A_UP_LS0004	chr3:38950369|38953629:-	SCN10A	sodium voltage-gated channel alpha subunit 10	protein coding gene	no	.	1.453	1.115	0.000	0.002(16)	0.014(10)	0(0)	non tumor-specific	nAS	no
HR_LS025	chr8:22127829|22128559:-	HR	HR lysine demethylase and nuclear receptor corepressor	protein coding gene	no	ENST00000381418.8;ENST00000312841.9	10.589	7.165	5.437	0.589(5645)	0.58(407)	0.819(14234)	non tumor-specific	exon_skip	yes
CHD1_LS026	chr5:98881375|98881975:-	CHD1	chromodomain helicase DNA binding protein 1	protein coding gene	yes	ENST00000614616.4;ENST00000284049.7;ENST00000511628.1	18.530	10.758	9.956	0.92(8817)	0.981(689)	0.968(16832)	non tumor-specific	alt_5prime;exon_skip	yes
UN_C9orf85_LS0024	chr9:71981584|71982657:+	C9orf85	chromosome 9 open reading frame 85	protein coding gene	no	.	1.107	0.087	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TSG101_LS0006	chr11:18480635|18481349:-	TSG101	tumor susceptibility 101	protein coding gene	yes	.	3.727	2.723	0.000	0.028(270)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
UN_AC073107.1_LS0106	chr7:65764799|65770467:-	AC073107.1	-	pseudogene	no	.	0.974	0.120	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRRC2A_LS0230	chr6:31633296|31633379:+	PRRC2A	proline rich coiled-coil 2A	protein coding gene	no	.	29.143	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	intron_retention	no
NAGK_LS003	chr2:71068336|71070502:+	NAGK	N-acetylglucosamine kinase	protein coding gene	no	ENST00000531934.5	0.121	0.023	1.552	0.819(7848)	0.852(598)	0.745(12950)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DIRC3-AS1_LS001	chr2:217282809|217295904:+	DIRC3-AS1	DIRC3 antisense RNA 1	lncRNA gene	no	ENST00000452813.1	0.915	0.000	0.757	0.004(41)	0(0)	0.085(1470)	non tumor-specific	nAS	yes
UN_BCAR3_LS0096	chr1:93754346|93766407:-	BCAR3	BCAR3 adaptor protein, NSP family member	protein coding gene	no	.	5.742	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAN1A1_LS0017	chr6:119204882|119290683:-	MAN1A1	mannosidase alpha class 1A member 1	protein coding gene	no	.	2.818	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SYNGR1_LS0013	chr22:39373644|39374316:+	SYNGR1	synaptogyrin 1	protein coding gene	no	.	1.636	0.959	0.000	0.15(1437)	0.236(166)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AL590644.1_LS0006	chr1:17195601|17197527:+	AL590644.1	-	lncRNA gene	no	.	4.008	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UQCC1_LS0056	chr20:35410166|35411940:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	.	0.626	0.039	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_TTC39C_LS0043	chr18:24114243|24114286:-	TTC39C	tetratricopeptide repeat domain 39C	protein coding gene	no	.	1.150	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
FAT4_LS017	chr4:125481738|125487345:+	FAT4	FAT atypical cadherin 4	protein coding gene	yes	ENST00000394329.7;ENST00000335110.5	5.030	6.373	8.025	0.536(5137)	0.872(612)	0.891(15492)	non tumor-specific	alt_3prime	yes
IRX6_LS008	chr16:55329311|55330298:+	IRX6	iroquois homeobox 6	protein coding gene	no	ENST00000290552.7	7.838	2.242	3.333	0.307(2944)	0.51(358)	0.546(9487)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MTERF3_LS012	chr8:96258700|96260137:-	MTERF3	mitochondrial transcription termination factor 3	protein coding gene	no	ENST00000517720.1	2.238	0.826	0.838	0.23(2203)	0.245(172)	0.368(6400)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CCDC18-AS1_LS0047	chr1:93325895|93335424:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	.	0.947	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC009102.2_UP_LS0002	chr16:56414344|56434331:-	AC009102.2	-	lncRNA gene	no	.	1.846	0.428	0.000	0.01(94)	0.006(4)	0(0)	non tumor-specific	nAS	no
LIG3_LS030	chr17:35002789|35002995:+	LIG3	DNA ligase 3	protein coding gene	no	ENST00000262327.9	0.378	0.607	1.256	0.515(4932)	0.527(370)	0.693(12050)	non tumor-specific	intron_retention	yes
SPDYE2B_LS004	chr7:102655214|102656248:+	SPDYE2B	speedy/RINGO cell cycle regulator family member E2B	protein coding gene	no	ENST00000507450.5;ENST00000436228.6;ENST00000455020.2	0.925	0.067	0.681	0.12(1148)	0.182(128)	0(7)	non tumor-specific	nAS	yes
UN_KATNBL1_LS0002	chr15:34142364|34145398:-	KATNBL1	katanin regulatory subunit B1 like 1	protein coding gene	no	.	11.210	0.019	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_TMCO4_LS0034	chr1:19743726|19745532:-	TMCO4	transmembrane and coiled-coil domains 4	protein coding gene	no	.	3.237	0.153	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
GAK_LS038	chr4:884086|888847:-	GAK	cyclin G associated kinase	protein coding gene	no	ENST00000314167.8;ENST00000511163.5	74.035	53.392	56.797	0.982(9412)	0.993(697)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
AC079447.1_LS018	chr2:99321265|99322509:+	AC079447.1	-	protein coding gene	no	.;.	4.153	0.955	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GPR137B_LS0001	chr1:236143036|236145702:+	GPR137B	G protein-coupled receptor 137B	protein coding gene	no	.	2.985	0.194	0.000	0.008(77)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_PAX3_LS0023	chr2:222294301|222294697:-	PAX3	paired box 3	protein coding gene	yes	.	2.300	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_C6orf48_UP_LS0150	chr6:31817089|31829196:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	92.822	12.393	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
BRD3_LS002	chr9:134034826|134041760:-	BRD3	bromodomain containing 3	protein coding gene	no	.;.	2.152	0.322	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CROCC_LS031	chr1:16946991|16951913:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000486318.1	0.756	0.403	0.798	0.169(1615)	0.179(126)	0.165(2872)	non tumor-specific	exon_skip	yes
UN_SLC39A8_LS0011	chr4:102305111|102305196:-	SLC39A8	solute carrier family 39 member 8	protein coding gene	no	.	2.644	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
ACAP3_LS011	chr1:1295554|1295736:-	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein coding gene	no	ENST00000354700.9;ENST00000492936.5;ENST00000467278.5;ENST00000353662.4	62.109	31.579	91.048	0.991(9490)	0.991(696)	0.979(17021)	non tumor-specific	alt_5prime	yes
GFRA2_LS016	chr8:21783142|21788120:-	GFRA2	GDNF family receptor alpha 2	protein coding gene	no	ENST00000306793.4	0.124	0.071	0.762	0.015(147)	0.024(17)	0.005(82)	non tumor-specific	alt_3prime;exon_skip	yes
MTA1_LS016	chr14:105450184|105450261:+	MTA1	metastasis associated 1	protein coding gene	no	ENST00000435036.6;ENST00000331320.11;ENST00000406191.5;ENST00000405646.5;ENST00000438610.5;ENST00000551236.5;ENST00000424723.5;ENST00000494026.1;ENST00000498644.5	43.500	21.022	57.482	0.992(9503)	0.994(698)	0.979(17017)	non tumor-specific	intron_retention	yes
NAP1L1_LS002	chr12:76047718|76048421:-	NAP1L1	nucleosome assembly protein 1 like 1	protein coding gene	no	ENST00000552056.5	16.099	3.172	49.032	0.862(8255)	0.802(563)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ACCS_LS022	chr11:44077922|44079531:+	ACCS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive)	protein coding gene	no	.;.;.	3.082	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC00635_LS009	chr3:107849971|107853873:-	LINC00635	long intergenic non-protein coding RNA 635	lncRNA gene	no	ENST00000497811.5	0.091	0.000	0.766	0(1)	0(0)	0.002(32)	non tumor-specific	nAS	yes
MROH6_LS020	chr8:143568261|143568470:-	MROH6	maestro heat like repeat family member 6	protein coding gene	no	ENST00000533582.1	1.701	0.359	1.617	0.647(6197)	0.513(360)	0.656(11409)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FAM217A_LS0006	chr6:4055676|4056321:+	FAM217A	family with sequence similarity 217 member A	protein coding gene	no	.	1.759	0.424	0.000	0.092(886)	0.081(57)	0(0)	non tumor-specific	exon_skip	no
ARMC10_LS029	chr7:103092653|103097277:+	ARMC10	armadillo repeat containing 10	protein coding gene	yes	ENST00000441711.6;ENST00000323716.7;ENST00000306450.5;ENST00000441711.6;ENST00000323716.7;ENST00000306450.5	78.833	41.360	54.978	0.997(9551)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MIR548A1HG_UP_LS0009	chr6:18517556|18519479:+	MIR548A1HG	MIR548A1 host gene	lncRNA gene	no	.	3.696	0.335	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ADH4_LS0010	chr4:99139148|99142679:-	ADH4	alcohol dehydrogenase 4 (class II), pi polypeptide	protein coding gene	no	.	0.918	63.566	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_AP000944.2_LS0023	chr11:65295990|65299049:+	AP000944.2	-	protein coding gene	no	.	2.388	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	exon_skip	no
ARHGEF2_LS005	chr1:155951272|155951483:-	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000313695.11;ENST00000361247.8;ENST00000462460.6;ENST00000470541.6;ENST00000368315.8;ENST00000313667.8	62.388	31.750	66.258	0.993(9512)	0.99(695)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_RALY_LS0027	chr20:34076570|34089516:-	RALY	RALY heterogeneous nuclear ribonucleoprotein	protein coding gene	no	.	0.638	0.015	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
THOC2_LS033	chrX:123623283|123623787:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000245838.12;ENST00000355725.8;ENST00000491737.5	23.933	12.041	15.114	0.93(8909)	0.963(676)	0.976(16967)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PHLDB3_LS0009	chr19:43476477|43478047:-	PHLDB3	pleckstrin homology like domain family B member 3	protein coding gene	no	.	1.374	0.208	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SEMA7A_UP_LS0005	chr15:74437055|74443232:-	SEMA7A	semaphorin 7A (John Milton Hagen blood group)	protein coding gene	no	.	0.489	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DBN1_LS011	chr5:177467062|177467255:-	DBN1	drebrin 1	protein coding gene	no	ENST00000309007.9;ENST00000292385.9;ENST00000472831.5;ENST00000393565.5;ENST00000477391.6;ENST00000471767.1	197.157	86.908	96.322	0.995(9529)	0.994(698)	0.979(17017)	non tumor-specific	alt_3prime	yes
UN_AP000553.1_LS0014	chr22:21657972|21658290:+	AP000553.1	-	lncRNA gene	no	.	2.600	0.398	0.000	0.028(269)	0.034(24)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
CHEK1_LS001	chr11:125626012|125626749:+	CHEK1	checkpoint kinase 1	protein coding gene	yes	ENST00000532449.5;ENST00000438015.5;ENST00000525396.5;ENST00000427383.6;ENST00000428830.6;ENST00000544373.5;ENST00000532669.5	2.656	0.722	1.182	0.841(8056)	0.793(557)	0.518(9008)	non tumor-specific	alt_5prime	yes
AC012594.1_LS010	chr2:170343637|170344799:-	AC012594.1	-	lncRNA gene	no	ENST00000597915.5;ENST00000626959.2;ENST00000625235.2;ENST00000625393.2;ENST00000630532.2	0.140	0.000	0.637	0.001(9)	0(0)	0.001(10)	non tumor-specific	nAS	yes
CACNG8_LS003	chr19:53980007|53982080:+	CACNG8	calcium voltage-gated channel auxiliary subunit gamma 8	protein coding gene	no	ENST00000270458.2;ENST00000638874.1	2.676	2.819	4.008	0.075(715)	0.013(9)	0.209(3633)	non tumor-specific	nAS	yes
UN_VWA5B2_UP_LS0010	chr3:184230169|184230380:+	VWA5B2	von Willebrand factor A domain containing 5B2	protein coding gene	no	.	1.560	0.018	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL162726.3_LS005	chr9:82281650|82428199:+	AL162726.3	-	pseudogene	no	ENST00000588492.5;ENST00000591117.5;ENST00000586399.5;ENST00000590791.5	1.888	0.023	0.728	0.001(14)	0.004(3)	0.023(404)	non tumor-specific	nAS	yes
PCNX1_LS039	chr14:71055562|71057509:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000304743.6;ENST00000439984.7;ENST00000556516.1	18.538	14.276	14.743	0.927(8883)	0.983(690)	0.976(16973)	non tumor-specific	exon_skip	yes
UN_TPST2_LS0027	chr22:26544675|26551177:-	TPST2	tyrosylprotein sulfotransferase 2	protein coding gene	no	.	8.127	0.060	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_HLA-DQB1_LS0015	chr6:32660474|32661347:-	HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	protein coding gene	no	.	68.856	18.852	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_COL8A1_LS0027	chr3:99777640|99790680:+	COL8A1	collagen type VIII alpha 1 chain	protein coding gene	no	.	2.697	0.048	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AP000787.3_UP_LS0001	chr11:95147482|95157628:+	AP000787.3	-	pseudogene	no	.	0.948	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
SLC17A7_LS008	chr19:49434046|49434602:-	SLC17A7	solute carrier family 17 member 7	protein coding gene	no	ENST00000221485.7;ENST00000600601.5;ENST00000600672.5;ENST00000596689.1;ENST00000598018.1	3.125	42.427	2.801	0.173(1662)	0.353(248)	0.771(13401)	non tumor-specific	nAS	yes
ARPP21_LS036	chr3:35709070|35715439:+	ARPP21	cAMP regulated phosphoprotein 21	protein coding gene	no	ENST00000187397.8;ENST00000446068.6	2.592	1.094	7.323	0.058(554)	0.013(9)	0.241(4185)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF506_LS0009	chr19:19786691|19790987:+	ZNF506	zinc finger protein 506	protein coding gene	no	.	2.359	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DNAH1_UP_LS0002	chr3:52291111|52304396:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	.	3.075	0.215	0.000	0.01(93)	0.003(2)	0(0)	non tumor-specific	nAS	no
IFT81_LS009	chr12:110135437|110136776:+	IFT81	intraflagellar transport 81	protein coding gene	no	ENST00000361948.8;ENST00000552912.5;ENST00000242591.9;ENST00000546374.5;ENST00000550156.5;ENST00000551273.1	13.587	7.204	14.444	0.947(9074)	0.962(675)	0.947(16463)	non tumor-specific	exon_skip	yes
UN_SCIMP_LS0013	chr17:5223484|5231208:+	SCIMP	SLP adaptor and CSK interacting membrane protein	protein coding gene	no	.	2.517	0.103	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_HID1_LS0004	chr17:74950829|74951274:+	HID1	HID1 domain containing	protein coding gene	no	.	1.638	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PNMA8A_LS002	chr19:46468577|46469938:-	PNMA8A	PNMA family member 8A	protein coding gene	no	ENST00000438932.2	0.822	0.430	1.489	0.4(3828)	0.49(344)	0.338(5869)	non tumor-specific	alt_5prime;mutex_exons	yes
HDAC7_LS058	chr12:47798652|47819767:-	HDAC7	histone deacetylase 7	protein coding gene	no	ENST00000425451.2	0.011	0.003	0.703	0.086(826)	0.117(82)	0.19(3297)	non tumor-specific	exon_skip	yes
RSPH10B2_LS024	chr7:6780888|6781328:+	RSPH10B2	radial spoke head 10 homolog B2	protein coding gene	no	ENST00000403107.5;ENST00000404077.5;ENST00000297186.7	2.364	2.192	0.965	0.032(303)	0.088(62)	0.251(4370)	non tumor-specific	exon_skip	yes
SLC35D1_LS004	chr1:67021602|67042236:-	SLC35D1	solute carrier family 35 member D1	protein coding gene	no	ENST00000235345.5	10.273	12.130	5.620	0.903(8649)	0.973(683)	0.947(16458)	non tumor-specific	exon_skip	yes
SEMA6A_LS037	chr5:116550646|116574185:-	SEMA6A	semaphorin 6A	protein coding gene	no	ENST00000512156.1	0.283	0.045	0.726	0.045(431)	0.048(34)	0.024(424)	non tumor-specific	nAS	yes
UN_GNB1_LS0103	chr1:1848529|1853152:-	GNB1	G protein subunit beta 1	protein coding gene	no	.	2.890	0.075	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC022400.6_LS0001	chr10:73797589|73802674:-	AC022400.6	-	protein coding gene	no	.	1.839	0.082	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
DUS1L_LS020	chr17:82061983|82062861:-	DUS1L	dihydrouridine synthase 1 like	protein coding gene	no	ENST00000306796.9;ENST00000354321.11;ENST00000578846.5;ENST00000538833.6;ENST00000578264.1;ENST00000582529.5;ENST00000578907.5;ENST00000578176.5	190.569	91.016	131.688	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
NMT1_LS006	chr17:45081752|45086508:+	NMT1	N-myristoyltransferase 1	protein coding gene	no	ENST00000592782.5;ENST00000258960.6;ENST00000543908.5;ENST00000590114.5;ENST00000592654.2	104.982	60.602	55.762	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_PAN3_LS0053	chr13:28239696|28256292:+	PAN3	poly(A) specific ribonuclease subunit PAN3	protein coding gene	no	.	3.131	1.622	0.000	0.467(4473)	0.594(417)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_ADGRA3_LS0027	chr4:22421089|22421537:-	ADGRA3	adhesion G protein-coupled receptor A3	protein coding gene	no	.	1.202	0.159	0.000	0.008(79)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_LCN2_LS0050	chr9:128152032|128152190:-	LCN2	lipocalin 2	protein coding gene	yes	.	16.535	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
CNBD1_LS014	chr8:87428613|87471248:+	CNBD1	cyclic nucleotide binding domain containing 1	protein coding gene	no	ENST00000523299.5;ENST00000521593.5	1.154	0.000	0.755	0(4)	0(0)	0.002(34)	non tumor-specific	exon_skip	yes
UN_NBPF2P_UP_LS0011	chr1:21431877|21435275:-	NBPF2P	NBPF member 2, pseudogene	pseudogene	no	.	0.809	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC114755.2_UP_LS0001	chr2:106459332|106470801:-	AC114755.2	-	pseudogene	no	.	1.362	0.057	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PHAX_LS0005	chr5:126601054|126603570:+	PHAX	phosphorylated adaptor for RNA export	protein coding gene	no	.	1.938	0.287	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_LINC01950_UP_LS0024	chr5:107286130|107296335:-	LINC01950	long intergenic non-protein coding RNA 1950	lncRNA gene	no	.	2.675	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IFITM2_LS0132	chr11:309074|314171:+	IFITM2	interferon induced transmembrane protein 2	protein coding gene	no	.	95.840	74.468	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DGCR2_LS0065	chr22:19038038|19038111:+	DGCR2	DiGeorge syndrome critical region gene 2	protein coding gene	no	.	0.969	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
IAPP_LS006	chr12:21373431|21378237:+	IAPP	islet amyloid polypeptide	protein coding gene	no	ENST00000539393.5;ENST00000240652.7;ENST00000537593.1	2.501	1.491	1.748	0.026(253)	0.017(12)	0.05(871)	non tumor-specific	exon_skip	yes
UN_RNU1-75P_UP_LS0003	chr1:119348555|119356403:-	RNU1-75P	RNA, U1 small nuclear 75, pseudogene	small non-coding RNA gene	no	.	4.612	2.822	0.000	0.066(635)	0.184(129)	0(0)	non tumor-specific	nAS	no
UN_SDHAF3_LS0008	chr7:97136467|97142673:+	SDHAF3	succinate dehydrogenase complex assembly factor 3	protein coding gene	no	.	0.756	0.061	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
NOSTRIN_LS005	chr2:168801203|168802381:+	NOSTRIN	nitric oxide synthase trafficking	protein coding gene	no	ENST00000458381.6;ENST00000444448.6	0.312	0.190	0.694	0.004(39)	0.003(2)	0.003(60)	non tumor-specific	exon_skip	yes
GLB1L_LS019	chr2:219243262|219243502:-	GLB1L	galactosidase beta 1 like	protein coding gene	no	ENST00000447002.5	0.392	0.192	0.680	0.345(3308)	0.45(316)	0.102(1768)	non tumor-specific	alt_3prime	yes
UN_AC005785.1_UP_LS0003	chr19:15336605|15344232:+	AC005785.1	-	lncRNA gene	no	.	2.904	0.207	0.000	0.015(143)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ADAMTS10_LS0009	chr19:8592870|8595779:-	ADAMTS10	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein coding gene	no	.	4.874	2.874	0.000	0.164(1576)	0.145(102)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
NDUFAF3_LS009	chr3:49022976|49023056:+	NDUFAF3	NADH:ubiquinone oxidoreductase complex assembly factor 3	protein coding gene	no	ENST00000326912.8;ENST00000326925.10;ENST00000395458.6;ENST00000451378.2;ENST00000496152.1	174.845	109.030	219.367	0.979(9383)	0.989(694)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UVSSA_LS0089	chr4:1394582|1394767:-	UVSSA	UV stimulated scaffold protein A	protein coding gene	no	.	2.633	0.137	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL031733.2_LS001	chr1:167629647|167630415:-	AL031733.2	-	lncRNA gene	no	ENST00000451992.2	0.312	0.014	0.663	0.03(291)	0.024(17)	0.023(408)	non tumor-specific	nAS	yes
UN_RBPJP2_UP_LS0018	chr9:66270267|66386708:+	RBPJP2	RBPJ pseudogene 2	pseudogene	no	.	1.669	0.348	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SPRR1B_UP_LS0003	chr1:153031072|153031160:+	SPRR1B	small proline rich protein 1B	protein coding gene	no	.	1.172	0.213	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADAM19_LS026	chr5:157564443|157570895:-	ADAM19	ADAM metallopeptidase domain 19	protein coding gene	no	ENST00000517951.5;ENST00000257527.8;ENST00000517905.1	4.167	2.447	3.346	0.606(5807)	0.574(403)	0.804(13970)	non tumor-specific	exon_skip	yes
PPFIBP2_LS024	chr11:7610422|7620935:+	PPFIBP2	PPFIA binding protein 2	protein coding gene	no	ENST00000299492.8;ENST00000529575.5;ENST00000533792.5;ENST00000525597.5;ENST00000528883.5;ENST00000530181.5;ENST00000299492.8;ENST00000529575.5;ENST00000533792.5;ENST00000525597.5;ENST00000528883.5;ENST00000530181.5	19.083	16.528	14.478	0.918(8798)	0.979(687)	0.974(16936)	non tumor-specific	alt_5prime;exon_skip	yes
LACRT_LS003	chr12:54631806|54632241:-	LACRT	lacritin	protein coding gene	no	ENST00000546721.5;ENST00000547511.5	2.390	0.844	0.682	0.003(32)	0.021(15)	0.002(28)	non tumor-specific	alt_3prime	yes
UN_TMEM110-MUSTN1_LS0002	chr3:52835006|52835789:-	TMEM110-MUSTN1	STIMATE-MUSTN1 readthrough	protein coding gene	no	.	4.682	1.382	0.000	0.003(26)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_RPL10AP1_UP_LS0013	chr14:103522505|103562616:-	RPL10AP1	ribosomal protein L10a pseudogene 1	pseudogene	no	.	1.347	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACSL1_LS0029	chr4:184803546|184805440:-	ACSL1	acyl-CoA synthetase long chain family member 1	protein coding gene	no	.	2.442	2.141	0.000	0.111(1066)	0.459(322)	0(0)	non tumor-specific	alt_5prime	no
UN_MUC5B_LS0145	chr11:1246194|1248625:-	MUC5B	mucin 5B, oligomeric mucus/gel-forming	protein coding gene	no	.	4.628	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SPG11_LS062	chr15:44652266|44657095:-	SPG11	SPG11 vesicle trafficking associated, spatacsin	protein coding gene	no	ENST00000261866.11;ENST00000535302.6;ENST00000427534.6;ENST00000558319.5;ENST00000559193.5	17.528	13.184	9.342	0.884(8474)	0.973(683)	0.966(16783)	non tumor-specific	nAS	yes
UN_SMIM7_LS0069	chr19:16647287|16654035:-	SMIM7	small integral membrane protein 7	protein coding gene	no	.	14.995	0.891	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
BMPR1B_LS020	chr4:95131512|95148748:+	BMPR1B	bone morphogenetic protein receptor type 1B	protein coding gene	no	ENST00000515059.5;ENST00000512312.5;ENST00000509540.5;ENST00000440890.6;ENST00000264568.8;ENST00000394931.1	10.394	5.207	2.347	0.511(4894)	0.591(415)	0.668(11612)	non tumor-specific	exon_skip	yes
TRIM69_LS012	chr15:44756463|44758621:+	TRIM69	tripartite motif containing 69	protein coding gene	no	ENST00000559390.5;ENST00000329464.8;ENST00000338264.8	1.402	0.653	1.370	0.411(3941)	0.332(233)	0.597(10375)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_RF00019_UP_LS0248	chr10:72884671|73242842:-	RF00019	-	small non-coding RNA gene	no	.	0.490	0.089	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
GALK2_LS023	chr15:49217313|49225205:+	GALK2	galactokinase 2	protein coding gene	no	ENST00000558956.5;ENST00000559208.5;ENST00000559423.5	0.040	0.047	0.921	0.551(5277)	0.574(403)	0.5(8688)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ARHGEF25_LS0015	chr12:57615017|57615241:+	ARHGEF25	Rho guanine nucleotide exchange factor 25	protein coding gene	no	.	4.398	2.507	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_HNRNPK_LS0031	chr9:83971722|83971907:+	HNRNPK	heterogeneous nuclear ribonucleoprotein K	protein coding gene	no	.	5.210	2.178	0.000	0.059(562)	0.04(28)	0(0)	non tumor-specific	nAS	no
ZSCAN2_LS018	chr15:84620772|84622646:+	ZSCAN2	zinc finger and SCAN domain containing 2	protein coding gene	no	ENST00000485222.2;ENST00000485222.2	0.051	0.124	0.727	0.263(2520)	0.261(183)	0.227(3951)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ZSCAN25_LS0006	chr7:99618651|99619561:+	ZSCAN25	zinc finger and SCAN domain containing 25	protein coding gene	no	.	1.962	0.927	0.000	0.047(453)	0.05(35)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC009533.1_LS005	chr12:9294974|9297781:+	AC009533.1	-	pseudogene	no	ENST00000539757.1	6.093	1.401	5.456	0.572(5477)	0.312(219)	0.904(15712)	non tumor-specific	nAS	yes
UN_SYT11_LS0015	chr1:155881848|155881984:-	SYT11	synaptotagmin 11	protein coding gene	no	.	0.756	0.381	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CHAF1A_LS0020	chr19:4422637|4422659:+	CHAF1A	chromatin assembly factor 1 subunit A	protein coding gene	no	.	4.389	0.148	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM98_LS013	chr17:32936447|32939477:+	TMEM98	transmembrane protein 98	protein coding gene	no	ENST00000394642.7;ENST00000579849.5;ENST00000439138.5	171.091	125.011	76.059	0.973(9321)	0.997(700)	0.956(16610)	non tumor-specific	exon_skip	yes
UN_MYL6B_LS0034	chr12:56155164|56158372:+	MYL6B	myosin light chain 6B	protein coding gene	no	.	24.990	68.454	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HERC2P2_LS0002	chr15:22495672|22516517:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	2.359	0.164	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAH17_LS097	chr17:78571378|78571590:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6	2.369	0.000	0.676	0.002(21)	0(0)	0.017(297)	non tumor-specific	nAS	yes
TRAV18_LS001	chr14:22003256|22003385:+	TRAV18	T cell receptor alpha variable 18	no	no	ENST00000390446.3	0.560	0.166	0.785	0.211(2018)	0.211(148)	0.144(2510)	non tumor-specific	nAS	yes
CYTH2_LS006	chr19:48472443|48473298:+	CYTH2	cytohesin 2	protein coding gene	no	ENST00000452733.6;ENST00000427476.4;ENST00000460595.5;ENST00000391881.7;ENST00000493260.5;ENST00000641098.1;ENST00000325139.9;ENST00000595765.2	73.319	48.842	79.211	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_CRMP1_LS0194	chr4:5823820|5828079:+	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	4.638	2.729	0.000	0.19(1820)	0.329(231)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
CLCN2_LS030	chr3:184355778|184357037:-	CLCN2	chloride voltage-gated channel 2	protein coding gene	no	ENST00000636658.1	2.985	0.000	0.703	0.001(6)	0(0)	0.081(1406)	non tumor-specific	alt_5prime	yes
UN_PLEKHH3_LS0016	chr17:42670705|42670939:-	PLEKHH3	pleckstrin homology, MyTH4 and FERM domain containing H3	protein coding gene	no	.	3.815	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_FSIP2-AS1_UP_LS0010	chr2:185950758|185952758:-	FSIP2-AS1	FSIP2 antisense RNA 1	lncRNA gene	no	.	3.470	0.186	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KAT6A_LS0007	chr8:41932320|41932372:+	KAT6A	lysine acetyltransferase 6A	protein coding gene	yes	.	2.753	0.467	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	nAS	no
TTC6_LS047	chr14:37916554|37926179:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000533625.5	0.077	0.000	0.792	0.001(8)	0(0)	0.023(395)	non tumor-specific	exon_skip	yes
NSFL1C_LS019	chr20:1458274|1464329:-	NSFL1C	NSFL1 cofactor	protein coding gene	no	ENST00000353088.6;ENST00000476071.5;ENST00000216879.8;ENST00000381653.9;ENST00000489203.2;ENST00000487086.1	151.300	98.356	84.199	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
SH3TC1_LS027	chr4:8216257|8218271:+	SH3TC1	SH3 domain and tetratricopeptide repeats 1	protein coding gene	no	ENST00000502669.5;ENST00000512100.5;ENST00000502669.5;ENST00000512100.5	0.417	0.317	2.009	0.694(6653)	0.776(545)	0.714(12413)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BNIP2_LS0004	chr15:59669362|59672637:-	BNIP2	BCL2 interacting protein 2	protein coding gene	no	.	5.971	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC007240.2_LS0004	chr2:10289318|10300842:-	AC007240.2	-	no	no	.	1.249	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MBD1_LS006	chr18:50269811|50271469:-	MBD1	methyl-CpG binding domain protein 1	protein coding gene	yes	.;.	5.869	2.823	0.000	0.126(1203)	0.125(88)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CTDSP2_LS0154	chr12:57822867|57822975:+	CTDSP2	CTD small phosphatase 2	protein coding gene	no	.	2.510	0.173	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
LIG1_LS002	chr19:48115965|48117638:-	LIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	no	ENST00000263274.11;ENST00000536218.5;ENST00000599322.5;ENST00000594759.5;ENST00000427526.6;ENST00000594067.5;ENST00000613670.4;ENST00000601091.5	81.737	18.521	28.273	0.996(9544)	0.997(700)	0.979(17014)	non tumor-specific	alt_5prime;exon_skip	yes
SLC5A6_LS032	chr2:27211533|27211711:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	ENST00000408041.5;ENST00000401463.5	0.038	0.130	1.458	0.677(6482)	0.642(451)	0.341(5923)	non tumor-specific	nAS	yes
UN_TMSB4X_LS0030	chrX:12976857|12976881:-	TMSB4X	thymosin beta 4 X-linked	protein coding gene	no	.	37.600	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
CHM_LS016	chrX:86027557|86047247:-	CHM	CHM Rab escort protein	protein coding gene	no	ENST00000467744.2	0.807	0.496	0.760	0.056(533)	0.048(34)	0.164(2846)	non tumor-specific	alt_5prime	yes
CCDC200_LS001	chr17:43217274|43221439:-	CCDC200	coiled-coil domain containing 200	protein coding gene	no	ENST00000427995.5	0.317	0.000	0.672	0.001(12)	0(0)	0.009(155)	non tumor-specific	nAS	yes
PKN3_LS019	chr9:128718387|128718549:+	PKN3	protein kinase N3	protein coding gene	no	ENST00000291906.4;ENST00000485301.1	15.374	7.722	15.747	0.977(9361)	0.972(682)	0.972(16895)	non tumor-specific	alt_3prime;exon_skip	yes
HDAC8_LS028	chrX:72491006|72494196:-	HDAC8	histone deacetylase 8	protein coding gene	no	ENST00000648850.1;ENST00000648731.1;ENST00000649543.1;ENST00000649242.1;ENST00000649518.1;ENST00000648577.1	1.591	0.143	0.000	0.016(158)	0.016(11)	0(0)	non tumor-specific	exon_skip	yes
UN_SHC1_UP_LS0004	chr1:155033264|155034454:-	SHC1	SHC adaptor protein 1	protein coding gene	no	.	2.067	0.231	0.000	0.042(406)	0.02(14)	0(0)	non tumor-specific	alt_3prime	no
UN_SNX4_LS0011	chr3:125470661|125476695:-	SNX4	sorting nexin 4	protein coding gene	no	.	4.345	0.254	0.000	0.012(117)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
RHOBTB1_LS008	chr10:60875042|60877908:-	RHOBTB1	Rho related BTB domain containing 1	protein coding gene	no	ENST00000337910.9;ENST00000357917.4	15.092	13.373	12.248	0.868(8320)	0.937(658)	0.945(16423)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP005212.4_LS0007	chr18:14255091|14338698:+	AP005212.4	-	lncRNA gene	no	.	7.910	0.474	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0321	chr21:8215725|8259736:+	FP236383.1	-	lncRNA gene	no	.	197.229	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTMR3_LS031	chr22:30022697|30025630:+	MTMR3	myotubularin related protein 3	protein coding gene	no	ENST00000401950.6;ENST00000323630.9;ENST00000351488.7;ENST00000491251.1	21.041	14.359	25.748	0.939(8994)	0.91(639)	0.978(17003)	non tumor-specific	exon_skip	yes
UN_ACSL1_LS0008	chr4:184757920|184758978:-	ACSL1	acyl-CoA synthetase long chain family member 1	protein coding gene	no	.	3.626	0.257	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARFGAP1_LS002	chr20:63272920|63275577:+	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	ENST00000519604.5;ENST00000519273.6;ENST00000370283.8;ENST00000547204.5;ENST00000522959.5;ENST00000549047.5;ENST00000523460.5;ENST00000520485.5;ENST00000524192.6;ENST00000519531.5;ENST00000370275.8;ENST00000518601.6;ENST00000353546.7	23.635	9.786	20.623	0.978(9367)	0.993(697)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_AC004922.1_LS0023	chr7:99389991|99390941:-	AC004922.1	-	protein coding gene	no	.	5.438	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PSMA2_LS010	chr7:42926668|42932118:-	PSMA2	proteasome 20S subunit alpha 2	protein coding gene	no	ENST00000411875.1	0.303	0.129	0.612	0.845(8096)	0.856(601)	0.05(869)	non tumor-specific	nAS	yes
GXYLT1_LS001	chr12:42087947|42097442:-	GXYLT1	glucoside xylosyltransferase 1	protein coding gene	no	ENST00000398675.7;ENST00000280876.6	13.158	7.286	4.585	0.927(8883)	0.963(676)	0.941(16356)	non tumor-specific	nAS	yes
UN_BRD3OS_LS0025	chr9:134029115|134031781:+	BRD3OS	BRD3 opposite strand	protein coding gene	no	.	1.120	0.236	0.000	0.012(113)	0.013(9)	0(0)	non tumor-specific	nAS	no
SLC39A11_LS024	chr17:73072540|73073667:-	SLC39A11	solute carrier family 39 member 11	protein coding gene	no	ENST00000581005.1	0.066	0.008	0.673	0.016(154)	0.009(6)	0.011(199)	non tumor-specific	nAS	yes
ABCA9_LS042	chr17:69045336|69049283:-	ABCA9	ATP binding cassette subfamily A member 9	protein coding gene	no	ENST00000340001.8;ENST00000453985.6;ENST00000461623.1;ENST00000495634.5	0.813	1.320	6.968	0.148(1418)	0.544(382)	0.866(15060)	non tumor-specific	exon_skip	yes
MEG8_LS016	chr14:100940450|100942765:+	MEG8	maternally expressed 8, small nucleolar RNA host gene	lncRNA gene	no	ENST00000555354.5;ENST00000554485.1	0.992	0.204	1.143	0.072(692)	0.02(14)	0.271(4718)	non tumor-specific	nAS	yes
FBL_LS013	chr19:39840515|39840620:-	FBL	fibrillarin	protein coding gene	no	ENST00000594309.5	0.439	0.121	1.245	0.87(8336)	0.782(549)	0.639(11100)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC44A1_LS0005	chr9:105245343|105299220:+	SLC44A1	solute carrier family 44 member 1	protein coding gene	no	.	1.669	0.384	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
TBCD_LS059	chr17:82930643|82937271:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000577051.1	8.176	3.280	0.698	0.196(1876)	0.12(84)	0.102(1775)	non tumor-specific	exon_skip	yes
ZNF236_LS016	chr18:76905415|76908320:+	ZNF236	zinc finger protein 236	protein coding gene	no	ENST00000320610.13;ENST00000543926.6;ENST00000253159.12	4.677	2.707	4.476	0.717(6869)	0.792(556)	0.937(16284)	non tumor-specific	nAS	yes
UN_TRPV6_LS0007	chr7:142876551|142876739:-	TRPV6	transient receptor potential cation channel subfamily V member 6	protein coding gene	no	.	2.092	2.637	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NSMAF_LS008	chr8:58589575|58590007:-	NSMAF	neutral sphingomyelinase activation associated factor	protein coding gene	no	ENST00000038176.7;ENST00000427130.6;ENST00000517612.5;ENST00000523177.5	20.938	11.164	24.861	0.985(9438)	0.989(694)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_DDX17_LS0045	chr22:38486127|38486224:+	DDX17	DEAD-box helicase 17	protein coding gene	no	.	3.728	0.474	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
SDCCAG8_LS030	chr1:243418076|243426427:+	SDCCAG8	SHH signaling and ciliogenesis regulator SDCCAG8	protein coding gene	no	ENST00000366541.7;ENST00000463042.1	25.834	13.415	24.437	0.991(9490)	0.987(693)	0.979(17011)	non tumor-specific	exon_skip	yes
UN_FRMD3_LS0043	chr9:83287367|83287705:+	FRMD3	FERM domain containing 3	protein coding gene	no	.	1.636	0.723	0.000	0.004(39)	0.01(7)	0(0)	non tumor-specific	nAS	no
SMARCAD1_LS028	chr4:94278733|94278929:+	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein coding gene	no	ENST00000354268.8;ENST00000509418.1	9.153	4.223	6.576	0.895(8577)	0.925(649)	0.949(16488)	non tumor-specific	alt_3prime;intron_retention	yes
CSTF2_LS005	chrX:100823428|100823886:+	CSTF2	cleavage stimulation factor subunit 2	protein coding gene	no	ENST00000415585.6;ENST00000372972.6;ENST00000475126.5;ENST00000413437.1	39.277	17.500	13.066	0.985(9436)	0.991(696)	0.975(16951)	non tumor-specific	exon_skip	yes
UN_ZNF813_LS0010	chr19:53476276|53483750:+	ZNF813	zinc finger protein 813	protein coding gene	no	.	0.789	0.078	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
HCFC2_LS016	chr12:104096433|104098343:+	HCFC2	host cell factor C2	protein coding gene	no	ENST00000229330.8;ENST00000544223.6	16.133	12.728	10.711	0.908(8696)	0.99(695)	0.972(16893)	non tumor-specific	exon_skip	yes
UN_TRIP13_LS0018	chr5:915973|917057:+	TRIP13	thyroid hormone receptor interactor 13	protein coding gene	no	.	2.201	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR81_LS011	chr17:1730487|1730755:+	WDR81	WD repeat domain 81	protein coding gene	no	ENST00000455636.5;ENST00000437219.6;ENST00000309182.9;ENST00000419248.5;ENST00000409644.5;ENST00000464528.5;ENST00000474958.2	14.753	8.687	15.799	0.969(9283)	0.989(694)	0.977(16981)	non tumor-specific	exon_skip;intron_retention	yes
MICAL3_LS049	chr22:17887435|17889034:-	MICAL3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein coding gene	no	ENST00000441493.6;ENST00000400561.6;ENST00000495076.5;ENST00000414725.6;ENST00000383094.7;ENST00000461307.5;ENST00000585038.1	15.062	12.280	10.913	0.846(8105)	0.923(648)	0.961(16696)	non tumor-specific	nAS	yes
ARHGEF1_LS039	chr19:41903407|41903707:+	ARHGEF1	Rho guanine nucleotide exchange factor 1	protein coding gene	yes	ENST00000354532.7;ENST00000600274.5;ENST00000599846.5;ENST00000347545.8;ENST00000378152.8;ENST00000337665.8;ENST00000599589.5;ENST00000595723.5;ENST00000354532.7;ENST00000600274.5;ENST00000599846.5;ENST00000347545.8;ENST00000378152.8;ENST00000337665.8;ENST00000599589.5;ENST00000595723.5	122.408	51.292	120.177	0.996(9543)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MTATP6P1_LS0101	chr1:634172|634264:-	MTATP6P1	MT-ATP6 pseudogene 1	pseudogene	no	.	82.037	76.982	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TUBD1_LS0014	chr17:59874700|59878103:-	TUBD1	tubulin delta 1	protein coding gene	no	.	2.847	0.233	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
GARNL3_LS010	chr9:127243253|127291168:+	GARNL3	GTPase activating Rap/RanGAP domain like 3	protein coding gene	no	ENST00000453030.5	0.251	0.128	0.879	0.102(978)	0.225(158)	0.325(5642)	non tumor-specific	alt_5prime;exon_skip	yes
AC027612.2_LS009	chr2:91711862|91712060:-	AC027612.2	-	pseudogene	no	ENST00000436174.5	2.422	0.141	1.092	0.003(26)	0.014(10)	0.006(112)	non tumor-specific	nAS	yes
UN_RHPN1_LS0032	chr8:143379078|143379363:+	RHPN1	rhophilin Rho GTPase binding protein 1	protein coding gene	no	.	1.936	0.011	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SPATA13_LS0069	chr13:24290910|24294739:+	SPATA13	spermatogenesis associated 13	lncRNA gene	no	.	2.044	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UCK1_LS015	chr9:131530645|131531094:-	UCK1	uridine-cytidine kinase 1	protein coding gene	no	ENST00000372210.7;ENST00000372210.7	5.354	3.703	1.579	0.793(7597)	0.855(600)	0.802(13932)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TRAV13-1_UP_LS0003	chr14:21852826|21854034:+	TRAV13-1	T cell receptor alpha variable 13-1	no	no	.	5.158	0.992	0.000	0.047(455)	0.027(19)	0(0)	non tumor-specific	nAS	no
DROSHA_LS011	chr5:31422944|31424427:-	DROSHA	drosha ribonuclease III	protein coding gene	no	ENST00000511367.6;ENST00000442743.5;ENST00000344624.7;ENST00000513349.5;ENST00000504133.5;ENST00000510178.1	51.524	22.341	37.179	0.995(9532)	0.994(698)	0.979(17020)	non tumor-specific	exon_skip	yes
SPAG9_LS004	chr17:50974947|50975863:-	SPAG9	sperm associated antigen 9	protein coding gene	yes	ENST00000510283.5	24.860	14.526	24.506	0.835(7997)	0.913(641)	0.97(16858)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZYG11B_LS005	chr1:52771774|52779853:+	ZYG11B	zyg-11 family member B, cell cycle regulator	protein coding gene	no	ENST00000545132.5;ENST00000294353.6	10.826	11.679	5.675	0.798(7645)	0.949(666)	0.932(16192)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KIF13B_LS0039	chr8:29113555|29114543:-	KIF13B	kinesin family member 13B	protein coding gene	no	.	1.345	0.403	0.000	0.009(91)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
NUMBL_LS010	chr19:40683042|40684417:-	NUMBL	NUMB like endocytic adaptor protein	protein coding gene	no	ENST00000599594.1	0.136	0.086	0.900	0.2(1913)	0.14(98)	0.39(6785)	non tumor-specific	nAS	yes
RRN3P1_LS006	chr16:21802728|21806131:-	RRN3P1	RRN3 pseudogene 1	pseudogene	no	ENST00000514813.6;ENST00000546471.5;ENST00000551901.5	3.173	1.748	15.411	0.87(8335)	0.86(604)	0.974(16924)	non tumor-specific	nAS	yes
UN_DEUP1_LS0014	chr11:93386041|93420985:-	DEUP1	deuterosome assembly protein 1	protein coding gene	no	.	0.979	0.094	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
ANO8_LS006	chr19:17327880|17328162:-	ANO8	anoctamin 8	protein coding gene	no	ENST00000597643.5;ENST00000159087.6	7.800	4.087	29.460	0.919(8807)	0.934(656)	0.979(17009)	non tumor-specific	alt_3prime;alt_5prime	yes
TTC17_LS019	chr11:43405951|43407138:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	ENST00000299240.10;ENST00000039989.8;ENST00000526774.5	40.345	25.649	28.606	0.974(9331)	0.99(695)	0.979(17013)	non tumor-specific	nAS	yes
ITPR2_LS034	chr12:26600109|26602370:-	ITPR2	inositol 1,4,5-trisphosphate receptor type 2	protein coding gene	no	ENST00000381340.7	11.343	9.083	3.793	0.663(6352)	0.883(620)	0.906(15742)	non tumor-specific	alt_3prime	yes
UN_PTEN_LS0062	chr10:87933251|87942615:+	PTEN	phosphatase and tensin homolog	protein coding gene	yes	.	2.009	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_NDUFV3_LS0063	chr21:42909603|42910255:+	NDUFV3	NADH:ubiquinone oxidoreductase subunit V3	protein coding gene	no	.	5.580	0.786	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
TAF15_LS009	chr17:35817317|35817716:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	ENST00000603777.5	0.287	0.048	0.660	0.002(19)	0.001(1)	0.097(1692)	non tumor-specific	exon_skip	yes
IGHGP_LS003	chr14:105668565|105668663:-	IGHGP	immunoglobulin heavy constant gamma P (non-functional)	no	no	ENST00000390555.3	29.514	61.592	2.376	0.536(5131)	0.621(436)	0.442(7680)	non tumor-specific	nAS	yes
UN_HCG22_LS0003	chr6:31054505|31055710:+	HCG22	HLA complex group 22	lncRNA gene	no	.	0.835	0.009	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
KIAA0930_LS012	chr22:45205912|45207573:-	KIAA0930	KIAA0930	protein coding gene	no	ENST00000440039.5	0.100	0.112	1.045	0.201(1923)	0.218(153)	0.429(7456)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRMP1_LS0187	chr4:5823783|5828519:+	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	1.018	0.306	0.000	0.003(32)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
SEPT2_LS030	chr2:241317599|241324216:+	SEPT2	septin 6	protein coding gene	no	ENST00000360051.7;ENST00000428524.5;ENST00000461048.5;ENST00000436795.5;ENST00000441533.5;ENST00000425899.5;ENST00000429791.5;ENST00000420786.5;ENST00000360051.7;ENST00000428524.5;ENST00000461048.5;ENST00000436795.5;ENST00000441533.5;ENST00000425899.5;ENST00000429791.5;ENST00000420786.5	1.576	1.364	9.912	0.946(9061)	0.962(675)	0.969(16848)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
VPS26C_LS010	chr21:37231590|37232377:-	VPS26C	VPS26 endosomal protein sorting factor C	protein coding gene	no	ENST00000495858.1	0.851	0.316	0.949	0.433(4145)	0.228(160)	0.473(8227)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_PLAGL2_LS0051	chr20:32196267|32196407:+	PLAGL2	PLAG1 like zinc finger 2	protein coding gene	yes	.	1.715	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCNJ4_LS0006	chr22:38428193|38431969:+	KCNJ4	potassium inwardly rectifying channel subfamily J member 4	protein coding gene	no	.	2.234	0.257	0.000	0.017(163)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AP005242.1_LS0003	chr18:15084022|15086621:-	AP005242.1	-	lncRNA gene	no	.	6.781	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NTMT1_LS013	chr9:129628715|129632650:+	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein coding gene	no	ENST00000486391.2	1.906	0.247	0.838	0.02(188)	0.019(13)	0.182(3158)	non tumor-specific	exon_skip	yes
UN_ANKRD20A7P_LS0002	chr9:42857107|42860536:+	ANKRD20A7P	ankyrin repeat domain 20 family member A7, pseudogene	pseudogene	no	.	2.775	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
METTL8_LS013	chr2:171331867|171337453:-	METTL8	methyltransferase like 8	protein coding gene	no	ENST00000612742.4;ENST00000375258.8;ENST00000447486.5;ENST00000438609.5;ENST00000392604.6;ENST00000640734.1;ENST00000638989.1	7.381	3.354	5.471	0.927(8885)	0.934(656)	0.942(16372)	non tumor-specific	exon_skip	yes
HUWE1_LS006	chrX:53535501|53536147:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000426907.5;ENST00000612484.4;ENST00000342160.7;ENST00000262854.10	271.496	129.195	181.287	0.989(9478)	0.996(699)	0.979(17021)	non tumor-specific	nAS	yes
UN_PPIAP31_LS0005	chr10:32188499|32188551:+	PPIAP31	peptidylprolyl isomerase A pseudogene 31	pseudogene	no	.	12.939	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AC079062.1_LS007	chr18:73170035|73172838:-	AC079062.1	-	lncRNA gene	no	ENST00000584544.5	0.670	0.004	0.681	0.01(95)	0.001(1)	0.004(76)	non tumor-specific	exon_skip	yes
UN_RPSAP68_UP_LS0708	chr21:8401678|8445688:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	196.006	71.857	0.000	0.005(51)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZNF704_LS0020	chr8:80813871|80821374:-	ZNF704	zinc finger protein 704	protein coding gene	no	.	2.376	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
NACA_LS017	chr12:56714687|56724452:-	NACA	nascent polypeptide associated complex subunit alpha	protein coding gene	no	ENST00000356769.7;ENST00000552540.5;ENST00000393891.8;ENST00000546392.5;ENST00000547914.5;ENST00000549259.5;ENST00000551775.5;ENST00000549855.5;ENST00000551793.5;ENST00000551520.1	1068.627	593.480	1393.745	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
RPL10_LS004	chrX:154398394|154398497:+	RPL10	ribosomal protein L15	protein coding gene	yes	ENST00000492572.5;ENST00000369817.6;ENST00000479366.1;ENST00000424325.6;ENST00000618723.4;ENST00000458500.5	21.398	43.544	325.028	0.97(9293)	0.94(660)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_RMDN2_LS0025	chr2:37978281|38029855:-	RMDN2	regulator of microtubule dynamics 2	protein coding gene	no	.	4.800	0.543	0.000	0.014(134)	0.037(26)	0(0)	non tumor-specific	nAS	no
C6_LS001	chr5:41143006|41149241:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	ENST00000337836.9;ENST00000263413.7	9.225	44.244	6.099	0.225(2156)	0.603(423)	0.752(13079)	non tumor-specific	alt_3prime	yes
UN_PRPSAP2_LS0030	chr17:18911251|18918290:+	PRPSAP2	phosphoribosyl pyrophosphate synthetase associated protein 2	protein coding gene	no	.	1.504	0.257	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SVOPL_LS023	chr7:138672117|138678434:-	SVOPL	SVOP like	protein coding gene	no	ENST00000419765.3	2.046	0.419	0.920	0.058(558)	0.11(77)	0.059(1023)	non tumor-specific	exon_skip	yes
UN_SLC24A4_UP_LS0002	chr14:92294895|92296432:+	SLC24A4	solute carrier family 24 member 4	protein coding gene	no	.	2.977	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KLC4_LS044	chr6:43073965|43074622:+	KLC4	kinesin light chain 4	protein coding gene	no	ENST00000467906.5;ENST00000347162.9;ENST00000453940.6;ENST00000259708.7;ENST00000479388.5;ENST00000394056.6;ENST00000486439.1	76.731	60.691	51.589	0.989(9478)	0.989(694)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MRPL35_LS0001	chr2:86199372|86199467:+	MRPL35	mitochondrial ribosomal protein L35	protein coding gene	no	.	0.928	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LINC00452_LS005	chr13:113902014|113915796:+	LINC00452	long intergenic non-protein coding RNA 452	lncRNA gene	no	ENST00000426859.1	1.176	0.000	0.646	0(2)	0(0)	0.015(265)	non tumor-specific	nAS	yes
PPM1A_LS012	chr14:60268435|60282684:+	PPM1A	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein coding gene	yes	ENST00000525399.2	1.628	1.717	0.964	0.257(2461)	0.255(179)	0.42(7299)	non tumor-specific	exon_skip;mutex_exons	yes
SMIM34A_LS001	chr21:34419630|34423833:-	SMIM34A	small integral membrane protein 34A	protein coding gene	no	ENST00000450895.1	1.813	0.782	0.440	0.065(619)	0.221(155)	0(1)	non tumor-specific	nAS	yes
UBAP1L_LS001	chr15:65093231|65094475:-	UBAP1L	ubiquitin associated protein 1 like	protein coding gene	no	ENST00000559089.5;ENST00000502113.2;ENST00000561387.1;ENST00000558802.1	1.527	0.901	10.767	0.821(7864)	0.862(605)	0.974(16929)	non tumor-specific	alt_5prime;intron_retention	yes
GOLGB1_LS011	chr3:121677030|121677285:-	GOLGB1	golgin B1	protein coding gene	no	ENST00000340645.9;ENST00000393667.7;ENST00000614479.4;ENST00000482512.5	84.494	50.175	96.674	0.994(9522)	0.994(698)	0.979(17021)	non tumor-specific	nAS	yes
UN_G6PD_LS0057	chrX:154533641|154534035:-	G6PD	glucose-6-phosphate dehydrogenase	protein coding gene	no	.	13.589	1.462	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC246787.2_UP_LS0971	chr14:105668934|105742164:+	AC246787.2	-	lncRNA gene	no	.	77.873	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
PIP4K2B_LS020	chr17:38786920|38799266:-	PIP4K2B	phosphatidylinositol-5-phosphate 4-kinase type 2 beta	protein coding gene	no	ENST00000619039.4;ENST00000617781.1	9.337	7.673	29.213	0.935(8956)	0.972(682)	0.978(16995)	non tumor-specific	alt_5prime;exon_skip	yes
NEB_LS178	chr2:151659169|151662135:-	NEB	nebulin	protein coding gene	no	ENST00000409198.5;ENST00000427231.6;ENST00000618972.4;ENST00000397345.7;ENST00000172853.14;ENST00000604864.5;ENST00000603639.5	7.244	61.253	1.006	0.026(250)	0.046(32)	0.183(3175)	non tumor-specific	nAS	yes
UN_DLD_UP_LS0006	chr7:107848335|107849153:+	DLD	dihydrolipoamide dehydrogenase	protein coding gene	no	.	8.497	1.414	0.000	0.022(212)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_PHYHIPL_LS0019	chr10:59238985|59245057:+	PHYHIPL	phytanoyl-CoA 2-hydroxylase interacting protein like	protein coding gene	no	.	3.113	0.845	0.000	0.052(498)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
ARSEP1_LS001	chrY:12341295|12347136:+	ARSEP1	arylsulfatase L pseudogene 1	pseudogene	no	ENST00000420443.1	2.067	0.251	0.750	0.013(122)	0.013(9)	0.026(447)	non tumor-specific	nAS	yes
AC006148.2_LS001	chr7:124274998|124287215:-	AC006148.2	-	lncRNA gene	no	ENST00000467017.1	0.235	0.013	0.798	0.004(43)	0.001(1)	0.002(35)	non tumor-specific	nAS	yes
UN_CENPB_LS0038	chr20:3784195|3785339:+	CENPB	centromere protein B	protein coding gene	no	.	1.482	0.659	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PCDHB5_LS0003	chr5:141135469|141136642:+	PCDHB5	protocadherin beta 5	protein coding gene	no	.	0.718	0.163	0.000	0.054(518)	0.031(22)	0(0)	non tumor-specific	nAS	no
POU2F2_LS028	chr19:42122378|42122511:-	POU2F2	POU class 2 homeobox 2	protein coding gene	no	ENST00000389341.9;ENST00000342301.8;ENST00000560558.5;ENST00000526816.6;ENST00000529067.5;ENST00000560804.6;ENST00000534559.5;ENST00000560398.5;ENST00000529952.5;ENST00000528894.8;ENST00000530982.7;ENST00000531773.5;ENST00000625670.2;ENST00000524801.6;ENST00000636631.1;ENST00000532176.2;ENST00000558596.4	1.828	0.766	1.841	0.655(6280)	0.652(458)	0.73(12692)	non tumor-specific	alt_5prime	yes
DCTN1-AS1_LS007	chr2:74391615|74391989:+	DCTN1-AS1	DCTN1 antisense RNA 1	lncRNA gene	no	ENST00000412957.5	1.092	1.679	1.269	0.006(57)	0.007(5)	0.075(1299)	non tumor-specific	nAS	yes
UN_BUB1B_LS0013	chr15:40200980|40202390:+	BUB1B	BUB1 mitotic checkpoint serine/threonine kinase B	protein coding gene	no	.	3.174	0.169	0.000	0.041(396)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
AL109767.1_LS001	chr14:99263208|99264138:+	AL109767.1	-	lncRNA gene	no	ENST00000429450.1	0.300	0.000	0.693	0(3)	0(0)	0.002(39)	non tumor-specific	nAS	yes
GRIP2_LS016	chr3:14517897|14520110:-	GRIP2	glutamate receptor interacting protein 2	protein coding gene	no	ENST00000621039.4;ENST00000619221.4;ENST00000637182.1	3.887	1.132	1.971	0.058(554)	0.121(85)	0.579(10068)	non tumor-specific	nAS	yes
UN_ZNF674_LS0022	chrX:46523088|46528335:-	ZNF674	zinc finger protein 674	protein coding gene	no	.	0.824	0.125	0.000	0.016(151)	0.028(20)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_AF064858.3_UP_LS0009	chr21:39017781|39018998:-	AF064858.3	-	lncRNA gene	no	.	1.824	0.445	0.000	0.013(128)	0.007(5)	0(0)	non tumor-specific	nAS	no
PPARGC1A_LS015	chr4:23828604|23829463:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	ENST00000509702.5;ENST00000264867.6;ENST00000613098.4;ENST00000506055.5;ENST00000513205.5;ENST00000509642.5;ENST00000617484.4;ENST00000612355.1;ENST00000514479.1;ENST00000508380.1	7.971	13.333	4.111	0.601(5760)	0.912(640)	0.817(14195)	non tumor-specific	intron_retention	yes
GTF2IP3_LS001	chr13:19026031|19026203:-	GTF2IP3	general transcription factor IIi pseudogene 3	pseudogene	no	ENST00000433887.1	0.946	0.000	0.681	0.001(9)	0(0)	0.004(75)	non tumor-specific	nAS	yes
UN_LINC00871_LS0015	chr14:46446226|46449908:+	LINC00871	long intergenic non-protein coding RNA 871	lncRNA gene	no	.	1.971	0.138	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
NXF2B_LS010	chrX:102365673|102366054:-	NXF2B	nuclear RNA export factor 2B	protein coding gene	no	ENST00000604395.5;ENST00000602195.5	7.112	0.082	0.707	0.076(730)	0.009(6)	0.01(176)	non tumor-specific	nAS	yes
ANKRD20A19P_LS004	chr13:23945980|23946166:-	ANKRD20A19P	ankyrin repeat domain 20 family member A19, pseudogene	pseudogene	no	ENST00000420143.5	0.705	0.002	0.824	0.022(213)	0.001(1)	0.049(856)	non tumor-specific	nAS	yes
ATP13A2_LS033	chr1:17002373|17004332:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000617114.4;ENST00000510069.5;ENST00000511957.5;ENST00000508222.5;ENST00000509619.1	25.408	16.914	14.599	0.972(9317)	0.959(673)	0.977(16982)	non tumor-specific	alt_3prime;alt_5prime	yes
RYR3_LS037	chr15:33663737|33669354:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1	2.607	1.577	1.749	0.025(236)	0.056(39)	0.493(8561)	non tumor-specific	nAS	yes
POM121_LS006	chr7:72891110|72913765:+	POM121	POM121 and ZP3 fusion	protein coding gene	no	ENST00000395270.5	2.968	2.185	2.561	0.743(7117)	0.822(577)	0.87(15115)	non tumor-specific	exon_skip	yes
UN_NR4A1_LS0010	chr12:52037443|52040830:+	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	.	0.531	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_HDDC2_LS0017	chr6:125300659|125302033:-	HDDC2	HD domain containing 2	protein coding gene	no	.	9.046	3.539	0.000	0.135(1294)	0.114(80)	0(0)	non tumor-specific	nAS	no
UN_AC128716.1_UP_LS0063	chr3:162204790|162216312:+	AC128716.1	-	pseudogene	no	.	2.336	0.374	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MFSD14C_LS0084	chr9:96972948|97006058:-	MFSD14C	major facilitator superfamily domain containing 14C	protein coding gene	no	.	0.999	0.089	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KLHDC3_LS0012	chr6:43018529|43018931:-	KLHDC3	kelch domain containing 3	protein coding gene	no	.	1.889	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
METAP2_LS013	chr12:95494217|95494957:+	METAP2	methionyl aminopeptidase 2	protein coding gene	no	ENST00000535095.5;ENST00000323666.9;ENST00000546753.5;ENST00000261220.13;ENST00000553151.5;ENST00000550777.5;ENST00000551840.5;ENST00000549808.1	145.172	85.217	84.389	0.994(9527)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime	yes
PNPLA1_LS003	chr6:36291552|36293061:+	PNPLA1	patatin like phospholipase domain containing 1	protein coding gene	no	ENST00000312917.9;ENST00000388715.7;ENST00000394571.3;ENST00000636260.1	2.116	2.269	2.853	0.088(847)	0.152(107)	0.193(3357)	non tumor-specific	exon_skip	yes
UN_AC096642.1_UP_LS0015	chr1:219241308|219248512:+	AC096642.1	-	lncRNA gene	no	.	0.958	0.117	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
TAPT1_LS020	chr4:16191523|16226259:-	TAPT1	transmembrane anterior posterior transformation 1	protein coding gene	no	ENST00000505317.1	0.064	0.041	0.921	0.538(5155)	0.725(509)	0.509(8843)	non tumor-specific	exon_skip	yes
OCEL1_LS006	chr19:17226353|17226994:+	OCEL1	occludin/ELL domain containing 1	protein coding gene	no	.;.	2.065	2.388	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PALB2_LS0002	chr16:23608012|23621362:-	PALB2	partner and localizer of BRCA2	protein coding gene	yes	.	4.294	0.375	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF517_LS0008	chr8:144800972|144802870:+	ZNF517	zinc finger protein 517	protein coding gene	no	.	1.345	0.251	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZFYVE16_LS0001	chr5:80408153|80411724:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	.	0.817	0.214	0.000	0.013(124)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NME6_LS003	chr3:48295235|48296119:-	NME6	NME/NM23 nucleoside diphosphate kinase 6	protein coding gene	no	ENST00000421967.5;ENST00000643457.1;ENST00000426689.6;ENST00000452211.5;ENST00000415053.5;ENST00000442597.5;ENST00000447314.5;ENST00000418431.5;ENST00000425930.5;ENST00000456495.5;ENST00000454531.1	8.574	5.727	10.443	0.991(9491)	0.997(700)	0.975(16941)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
RBP1_LS001	chr3:139517680|139518421:-	RBP1	retinol binding protein 1	protein coding gene	yes	ENST00000474490.1;ENST00000232219.6;ENST00000619087.4	290.495	171.392	58.460	0.979(9383)	0.994(698)	0.956(16614)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC00839_LS0009	chr10:42487126|42489252:+	LINC00839	long intergenic non-protein coding RNA 839	lncRNA gene	no	.	3.689	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
DYNLRB2_LS001	chr16:80540854|80543276:+	DYNLRB2	dynein light chain roadblock-type 2	protein coding gene	no	ENST00000562982.5	0.529	0.219	0.871	0.283(2708)	0.375(263)	0.155(2687)	non tumor-specific	alt_3prime	yes
ZFYVE16_LS024	chr5:80451709|80455692:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	ENST00000338008.9;ENST00000510158.5;ENST00000505560.4;ENST00000511829.5	18.944	14.412	15.982	0.942(9029)	0.986(692)	0.977(16989)	non tumor-specific	nAS	yes
UN_KRCC1_LS0007	chr2:88034231|88036943:-	KRCC1	lysine rich coiled-coil 1	protein coding gene	no	.	3.981	2.575	0.000	0.128(1224)	0.13(91)	0(0)	non tumor-specific	alt_3prime	no
UN_AC093813.1_UP_LS0001	chr7:155952408|155964452:+	AC093813.1	-	pseudogene	no	.	2.733	0.327	0.000	0.008(76)	0.009(6)	0(0)	non tumor-specific	nAS	no
AL390728.4_LS005	chr1:247202080|247210691:-	AL390728.4	-	pseudogene	no	ENST00000606212.1	0.653	0.773	1.478	0.731(7004)	0.766(538)	0.678(11777)	non tumor-specific	nAS	yes
IL16_LS040	chr15:81306545|81308605:+	IL16	interleukin 16	protein coding gene	no	ENST00000360547.9;ENST00000394660.6;ENST00000302987.8;ENST00000394652.6;ENST00000360547.9;ENST00000394660.6;ENST00000302987.8;ENST00000394652.6;ENST00000360547.9;ENST00000394660.6;ENST00000302987.8;ENST00000394652.6	13.156	4.368	15.237	0.856(8200)	0.916(643)	0.962(16727)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AHCYL1_LS005	chr1:110009145|110011214:+	AHCYL1	adenosylhomocysteinase like 1	protein coding gene	yes	ENST00000369799.9;ENST00000393614.8;ENST00000475081.1;ENST00000359172.3	125.247	111.527	83.225	0.978(9371)	0.989(694)	0.979(17019)	non tumor-specific	alt_3prime	yes
DAGLB_LS013	chr7:6426114|6430480:-	DAGLB	diacylglycerol lipase beta	protein coding gene	no	ENST00000297056.10;ENST00000436575.5	24.733	14.123	9.857	0.97(9294)	0.993(697)	0.976(16968)	non tumor-specific	exon_skip	yes
AC009137.2_LS001	chr16:68933901|68937167:+	AC009137.2	-	lncRNA gene	no	ENST00000568179.1	0.035	0.014	0.652	0.09(866)	0.058(41)	0.008(142)	non tumor-specific	nAS	yes
YIPF5_LS006	chr5:144165604|144170284:-	YIPF5	Yip1 domain family member 5	protein coding gene	no	ENST00000513112.5	0.379	0.251	0.630	0.115(1099)	0.131(92)	0.056(967)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SFTA2_LS0005	chr6:30931795|30933891:-	SFTA2	surfactant associated 2	protein coding gene	no	.	2.987	11.160	0.000	0.003(30)	0.013(9)	0(0)	non tumor-specific	nAS	no
STRADA_LS026	chr17:63714108|63726638:-	STRADA	STE20 related adaptor alpha	protein coding gene	yes	ENST00000245865.10;ENST00000375840.9;ENST00000638702.1;ENST00000640979.1;ENST00000638276.1;ENST00000579340.5;ENST00000638718.1;ENST00000577375.5;ENST00000580338.5;ENST00000582030.5;ENST00000580288.2;ENST00000584110.1	4.056	3.110	3.935	0.94(9002)	0.972(682)	0.898(15606)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CROCCP2_LS0107	chr1:16648792|16649308:+	CROCCP2	CROCC pseudogene 2	pseudogene	no	.	5.503	1.506	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ARSF_LS0014	chrX:3084666|3089583:+	ARSF	arylsulfatase F	protein coding gene	no	.	4.204	1.580	0.000	0.029(278)	0.037(26)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_YOD1_UP_LS0002	chr1:207099987|207263994:-	YOD1	YOD1 deubiquitinase	protein coding gene	no	.	9.610	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
STRC_LS025	chr15:43610386|43611499:-	STRC	stereocilin	protein coding gene	no	ENST00000541030.5;ENST00000440125.5	0.003	0.000	0.664	0.001(9)	0(0)	0.007(122)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRR36_LS0073	chr19:7870395|7870711:+	PRR36	proline rich 36	protein coding gene	no	.	3.915	0.000	0.000	0.006(58)	0(0)	0(0)	non tumor-specific	nAS	no
CA5A_LS006	chr16:87902520|87904786:-	CA5A	carbonic anhydrase 5A	protein coding gene	no	ENST00000309893.3;ENST00000649158.1;ENST00000648022.1;ENST00000649794.1	7.866	6.002	15.548	0.037(358)	0.084(59)	0.02(349)	non tumor-specific	exon_skip	yes
ATXN2_LS040	chr12:111513539|111518249:-	ATXN2	ataxin 2	protein coding gene	no	ENST00000550236.1;ENST00000481331.1	1.624	1.191	2.391	0.775(7427)	0.823(578)	0.833(14477)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COX19_LS0004	chr7:898949|899041:-	COX19	cytochrome c oxidase assembly factor COX19	protein coding gene	no	.	9.683	4.398	0.000	0.015(144)	0.014(10)	0(0)	non tumor-specific	nAS	no
SCYL1_LS032	chr11:65538288|65538442:+	SCYL1	SCY1 like pseudokinase 1	protein coding gene	yes	.;.	14.911	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_BTBD2_LS0102	chr19:2013800|2015297:-	BTBD2	BTB domain containing 2	protein coding gene	no	.	0.913	0.032	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
RBM46_LS004	chr4:154796903|154797811:+	RBM46	RNA binding motif protein 46	protein coding gene	no	ENST00000514866.5;ENST00000281722.7;ENST00000510397.5;ENST00000512640.1	3.117	0.385	0.713	0.026(253)	0.019(13)	0.047(824)	non tumor-specific	nAS	yes
ITM2C_LS006	chr2:230865403|230873417:+	ITM2C	integral membrane protein 2C	protein coding gene	no	ENST00000409704.6	0.003	0.878	0.902	0.214(2049)	0.269(189)	0.022(388)	non tumor-specific	alt_5prime	yes
COL13A1_LS037	chr10:69921935|69922708:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000645393.1;ENST00000479733.5;ENST00000398978.7;ENST00000354547.7;ENST00000357811.7;ENST00000520267.5;ENST00000398969.7;ENST00000517713.5;ENST00000522165.5;ENST00000520133.5	5.642	3.927	4.214	0.479(4590)	0.489(343)	0.841(14620)	non tumor-specific	exon_skip	yes
UN_ABHD18_LS0040	chr4:128014325|128017358:+	ABHD18	abhydrolase domain containing 18	protein coding gene	no	.	2.106	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime	no
PIEZO1_LS023	chr16:88721430|88721538:-	PIEZO1	piezo type mechanosensitive ion channel component 1	protein coding gene	no	ENST00000301015.14	47.154	27.903	58.156	0.898(8606)	0.972(682)	0.979(17014)	non tumor-specific	nAS	yes
PCCA_LS040	chr13:100527344|100527675:+	PCCA	propionyl-CoA carboxylase subunit alpha	protein coding gene	no	ENST00000428969.1	1.488	1.166	1.090	0.678(6498)	0.783(550)	0.533(9256)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
MIA2_LS010	chr14:39253171|39276934:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	ENST00000553728.1;ENST00000640607.1	4.907	6.174	1.451	0.188(1801)	0.369(259)	0.12(2082)	non tumor-specific	nAS	yes
UN_ATP8B1_LS0057	chr18:57731829|57733581:-	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	.	1.050	0.923	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
TBC1D26_LS006	chr17:15734088|15734704:+	TBC1D26	TBC1 domain family member 26	protein coding gene	no	ENST00000464963.5;ENST00000582140.1;ENST00000583620.1	0.076	0.038	0.750	0.011(101)	0.017(12)	0.011(188)	non tumor-specific	nAS	yes
ZFPM2-AS1_LS013	chr8:105927717|106060135:-	ZFPM2-AS1	ZFPM2 antisense RNA 1	lncRNA gene	no	ENST00000521622.1	0.024	0.000	0.675	0.078(749)	0.01(7)	0.016(280)	non tumor-specific	nAS	yes
THBS3_LS041	chr1:155203305|155204855:-	THBS3	thrombospondin 3	protein coding gene	no	ENST00000541576.5;ENST00000541576.5	0.266	0.380	0.799	0.577(5531)	0.591(415)	0.369(6422)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AL021407.3_UP_LS0007	chr6:16154301|16154448:+	AL021407.3	-	pseudogene	no	.	2.091	0.000	0.000	0.006(58)	0(0)	0(0)	non tumor-specific	nAS	no
CYP1A2_LS003	chr15:74751309|74751765:+	CYP1A2	cytochrome P450 family 1 subfamily A member 2	protein coding gene	no	ENST00000343932.4	18.902	85.819	1.171	0.028(272)	0.095(67)	0.072(1253)	non tumor-specific	nAS	yes
UN_EML5_LS0009	chr14:88680548|88681890:-	EML5	EMAP like 5	protein coding gene	no	.	1.913	0.817	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NRXN3_LS0017	chr14:79414168|79428783:-	NRXN3	neurexin 3	protein coding gene	no	.	1.542	0.272	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_POLR3E_LS0023	chr16:22328587|22332069:+	POLR3E	RNA polymerase III subunit E	protein coding gene	no	.	4.842	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PPP6R3_LS027	chr11:68554257|68558566:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000393800.6;ENST00000524845.5;ENST00000265637.8;ENST00000524904.5;ENST00000393801.7;ENST00000265636.9;ENST00000529710.5;ENST00000527403.6;ENST00000393800.6;ENST00000524845.5;ENST00000265637.8;ENST00000524904.5;ENST00000393801.7;ENST00000265636.9;ENST00000529710.5;ENST00000527403.6	33.438	24.841	21.580	0.951(9116)	0.987(693)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_IL32_LS0231	chr16:3069464|3082059:+	IL32	interleukin 32	protein coding gene	no	.	3.940	13.111	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_POTEI_LS0005	chr2:130496349|130497826:+	POTEI	POTE ankyrin domain family member I	protein coding gene	no	.	8.628	2.438	0.000	0.008(73)	0.014(10)	0(0)	non tumor-specific	nAS	no
SEL1L3_LS037	chr4:25847864|25863621:-	SEL1L3	SEL1L family member 3	protein coding gene	no	ENST00000513691.1	0.009	0.007	0.716	0.223(2139)	0.208(146)	0.006(111)	non tumor-specific	alt_5prime	yes
SEC14L1_LS487	chr17:77216244|77216310:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	5.970	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_ERC2_LS0018	chr3:55606966|55699378:-	ERC2	ELKS/RAB6-interacting/CAST family member 2	protein coding gene	no	.	1.789	0.017	0.000	0.01(97)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC136475.4_UP_LS0028	chr11:314316|320631:+	AC136475.4	-	lncRNA gene	no	.	60.951	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
INTS7_LS029	chr1:212021212|212035344:-	INTS7	integrator complex subunit 7	protein coding gene	yes	ENST00000469606.5;ENST00000366994.7;ENST00000366993.7;ENST00000366992.7;ENST00000440600.6	17.892	7.360	5.677	0.911(8728)	0.957(672)	0.953(16560)	non tumor-specific	exon_skip	yes
FUT2_LS001	chr19:48696079|48696317:+	FUT2	fucosyltransferase 2	protein coding gene	no	.;.	5.151	3.288	0.000	0.06(579)	0.047(33)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
TIA1_LS032	chr2:70236175|70248405:-	TIA1	TIA1 cytotoxic granule associated RNA binding protein	protein coding gene	no	ENST00000433529.6;ENST00000415783.6;ENST00000282574.8;ENST00000445587.5;ENST00000416149.6;ENST00000474809.6;ENST00000477044.6;ENST00000496452.5;ENST00000481650.1	10.909	5.203	32.784	0.946(9068)	0.944(663)	0.978(17001)	non tumor-specific	nAS	yes
ATXN7_LS002	chr3:63864999|63873749:+	ATXN7	ataxin 7	protein coding gene	no	ENST00000474513.6	0.350	0.008	0.635	0.014(136)	0.013(9)	0.019(325)	non tumor-specific	exon_skip	yes
TASP1_LS005	chr20:13483337|13528446:-	TASP1	taspase 1	protein coding gene	no	ENST00000480436.5	5.050	3.372	1.881	0.736(7052)	0.739(519)	0.771(13394)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_LAMP1_LS0039	chr13:113319595|113320383:-	LAMP1	lysosomal associated membrane protein 1	protein coding gene	no	.	7.679	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TAX1BP1_LS0016	chr7:27827820|27828644:+	TAX1BP1	Tax1 binding protein 1	protein coding gene	no	.	26.014	0.278	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TUSC3_LS030	chr8:15748465|15757791:+	TUSC3	tumor suppressor candidate 3	protein coding gene	no	ENST00000503731.5;ENST00000511783.2;ENST00000507316.1;ENST00000503731.5;ENST00000511783.2;ENST00000507316.1	66.820	40.017	20.103	0.941(9018)	0.99(695)	0.931(16176)	non tumor-specific	alt_3prime;exon_skip	yes
NR2C2_LS011	chr3:15004613|15013589:+	NR2C2	nuclear receptor subfamily 2 group C member 2	protein coding gene	yes	ENST00000323373.10;ENST00000475707.5;ENST00000437120.5;ENST00000617312.4	0.569	0.485	1.594	0.654(6265)	0.752(528)	0.762(13243)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC006055.1_UP_LS0001	chr3:43844065|43854697:-	AC006055.1	-	lncRNA gene	no	.	4.867	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DYNC1I1_LS0008	chr7:95810506|95813280:+	DYNC1I1	dynein cytoplasmic 1 intermediate chain 1	protein coding gene	no	.	4.623	3.259	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TNIK_LS0003	chr3:171071323|171074395:-	TNIK	TRAF2 and NCK interacting kinase	protein coding gene	no	.	3.278	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBC1D2B_LS0016	chr15:77995063|77998195:-	TBC1D2B	TBC1 domain family member 2B	protein coding gene	no	.	10.809	0.193	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
OTUD6B_LS003	chr8:91073911|91076592:+	OTUD6B	OTU deubiquitinase 6B	protein coding gene	no	ENST00000615618.1;ENST00000522894.5;ENST00000524027.5	0.582	0.281	2.267	0.705(6753)	0.739(519)	0.824(14319)	non tumor-specific	alt_5prime;exon_skip	yes
RDH13_LS038	chr19:55068530|55069322:-	RDH13	retinol dehydrogenase 13	protein coding gene	no	ENST00000586945.5;ENST00000587026.1	0.065	0.003	0.617	0.033(314)	0.036(25)	0.003(53)	non tumor-specific	mutex_exons	yes
UN_PTPRF_LS0003	chr1:43531090|43538202:+	PTPRF	protein tyrosine phosphatase receptor type F	protein coding gene	no	.	2.648	0.703	0.000	0.005(45)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLOD2_LS014	chr3:146077924|146079116:-	PLOD2	procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	protein coding gene	no	ENST00000461497.5;ENST00000282903.9;ENST00000494950.5;ENST00000478436.1	33.305	18.418	14.996	0.948(9083)	0.986(692)	0.933(16218)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FAM174B_LS0015	chr15:92619459|92621874:-	FAM174B	family with sequence similarity 174 member B	protein coding gene	no	.	1.609	0.285	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC069294.1_UP_LS0026	chr7:99735061|99752460:+	AC069294.1	-	lncRNA gene	no	.	3.252	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTPRT_LS0013	chr20:42085841|42098421:-	PTPRT	protein tyrosine phosphatase receptor type T	protein coding gene	yes	.	2.988	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AC018467.1_LS011	chr2:23090848|23198809:-	AC018467.1	-	lncRNA gene	no	ENST00000440785.1	0.815	1.154	1.248	0.017(161)	0.068(48)	0.021(362)	non tumor-specific	nAS	yes
TCAF1P1_LS006	chr7:143603652|143604585:+	TCAF1P1	TRPM8 channel associated factor 1 pseudogene 1	pseudogene	no	ENST00000414990.3	0.474	0.461	0.607	0.187(1793)	0.226(159)	0.005(80)	non tumor-specific	nAS	yes
UN_GM2A_LS0037	chr5:151267491|151268912:+	GM2A	GM2 ganglioside activator	protein coding gene	no	.	7.453	0.010	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ABCC2_LS007	chr10:99794468|99796391:+	ABCC2	ATP binding cassette subfamily C member 2	protein coding gene	no	ENST00000649493.1	1.309	1.648	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_MRPS27_LS0004	chr5:72220244|72220380:+	MRPS27	mitochondrial ribosomal protein S27	protein coding gene	no	.	3.360	0.186	0.000	0.005(49)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_KCNS3_LS0030	chr2:17949528|18011183:-	KCNS3	potassium voltage-gated channel modifier subfamily S member 3	protein coding gene	no	.	1.844	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
NEDD8-MDP1_LS003	chr14:24214599|24215552:-	NEDD8-MDP1	NEDD8-MDP1 readthrough	protein coding gene	no	ENST00000605847.5;ENST00000534348.5;ENST00000530579.6;ENST00000604306.1	26.287	16.329	40.812	0.996(9542)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_AL662907.2_UP_LS0002	chr1:33128449|33160852:+	AL662907.2	-	lncRNA gene	no	.	1.043	0.668	0.000	0.004(41)	0.013(9)	0(0)	non tumor-specific	nAS	no
DISP3_LS007	chr1:11516161|11517463:+	DISP3	dispatched RND transporter family member 3	protein coding gene	no	ENST00000294484.6	4.631	1.094	1.964	0.152(1457)	0.013(9)	0.3(5209)	non tumor-specific	alt_5prime	yes
SLC16A3_LS016	chr17:82237893|82260899:+	SLC16A3	solute carrier family 16 member 3	protein coding gene	no	ENST00000583025.1	1.280	0.415	1.235	0.131(1251)	0.225(158)	0.524(9105)	non tumor-specific	nAS	yes
UN_MYO9B_LS0064	chr19:17195160|17195187:-	MYO9B	myosin IXB	protein coding gene	no	.	2.195	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP001625.2_UP_LS0012	chr21:42581940|42599285:-	AP001625.2	-	lncRNA gene	no	.	1.236	0.217	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MUC16_LS0168	chr19:8937496|8937989:+	MUC16	mucin 16, cell surface associated	protein coding gene	no	.	1.813	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TMIGD3_LS005	chr1:111488867|111515381:-	TMIGD3	transmembrane and immunoglobulin domain containing 3	protein coding gene	no	.;.	0.875	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EVL_LS018	chr14:100128748|100129563:+	EVL	Enah/Vasp-like	protein coding gene	no	ENST00000402714.6;ENST00000544450.6;ENST00000392920.7;ENST00000554045.5;ENST00000557384.5;ENST00000554695.5;ENST00000554031.5	22.308	20.927	56.218	0.992(9500)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
DGKK_LS015	chrX:50387653|50388527:-	DGKK	diacylglycerol kinase kappa	protein coding gene	no	ENST00000611977.1	7.100	0.018	1.784	0.042(398)	0.001(1)	0.066(1139)	non tumor-specific	nAS	yes
UN_AL031316.1_LS0006	chr1:209663061|209687251:-	AL031316.1	-	lncRNA gene	no	.	5.236	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MYL5_LS0031	chr4:681321|681893:+	MYL5	myosin light chain 5	protein coding gene	no	.	4.029	0.159	0.000	0.013(121)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
SLC6A7_LS001	chr5:150190360|150194728:+	SLC6A7	solute carrier family 6 member 7	protein coding gene	no	ENST00000230671.6;ENST00000524041.1;ENST00000513403.1	0.264	1.114	4.320	0.055(523)	0.026(18)	0.137(2382)	non tumor-specific	nAS	yes
GRIK1-AS1_LS002	chr21:29749145|29758831:+	GRIK1-AS1	GRIK1 antisense RNA 1	lncRNA gene	no	ENST00000455392.6;ENST00000309331.8	0.629	0.297	0.881	0.023(216)	0.083(58)	0.252(4372)	non tumor-specific	nAS	yes
TEK_LS025	chr9:27213597|27217688:+	TEK	TEK receptor tyrosine kinase	protein coding gene	no	ENST00000519097.5;ENST00000615002.4;ENST00000380036.8;ENST00000406359.8	8.529	26.663	14.972	0.762(7305)	0.97(681)	0.936(16276)	non tumor-specific	nAS	yes
AXIN2_LS012	chr17:65549660|65557806:-	AXIN2	axin 2	protein coding gene	yes	ENST00000307078.9;ENST00000618960.4;ENST00000375702.5	14.303	9.819	7.988	0.793(7602)	0.902(633)	0.94(16334)	non tumor-specific	nAS	yes
NMT2_LS012	chr10:15135418|15140987:-	NMT2	N-myristoyltransferase 2	protein coding gene	no	ENST00000378150.1;ENST00000478580.1	3.894	3.942	2.734	0.761(7288)	0.909(638)	0.873(15168)	non tumor-specific	exon_skip	yes
UN_SDHAP2_LS0013	chr3:195668680|195671132:+	SDHAP2	succinate dehydrogenase complex flavoprotein subunit A pseudogene 2	pseudogene	no	.	6.313	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NRIP3_LS0001	chr11:8983552|8983875:-	NRIP3	nuclear receptor interacting protein 3	protein coding gene	no	.	0.852	0.654	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
BACE2_LS010	chr21:41241939|41243376:+	BACE2	beta-secretase 2	protein coding gene	no	ENST00000487994.5	0.577	0.548	9.990	0.935(8955)	0.96(674)	0.907(15768)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MRPL48P1_UP_LS0014	chr6:10472368|10474500:-	MRPL48P1	mitochondrial ribosomal protein L48 pseudogene 1	pseudogene	no	.	2.663	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CDH26_LS014	chr20:59996054|59996631:+	CDH26	cadherin 26	protein coding gene	no	ENST00000348616.8;ENST00000370991.7;ENST00000497614.1	4.793	2.886	2.354	0.305(2922)	0.362(254)	0.827(14375)	non tumor-specific	alt_5prime;exon_skip	yes
PSMA6_LS015	chr14:35313059|35314361:+	PSMA6	proteasome 20S subunit alpha 6	protein coding gene	no	ENST00000540871.5;ENST00000622405.4;ENST00000554541.5;ENST00000261479.8;ENST00000554620.5;ENST00000553809.5;ENST00000555764.5	401.952	183.237	249.099	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF740_LS0002	chr12:53180910|53181677:+	ZNF740	zinc finger protein 740	protein coding gene	no	.	0.701	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RN7SL201P_UP_LS0059	chr2:81822391|81848753:+	RN7SL201P	RNA, 7SL, cytoplasmic 201, pseudogene	small non-coding RNA gene	no	.	3.546	0.000	0.000	0.009(86)	0(0)	0(0)	non tumor-specific	nAS	no
WRAP53_LS004	chr17:7689079|7689224:+	WRAP53	WD repeat containing antisense to TP53	protein coding gene	no	ENST00000431639.6;ENST00000316024.9;ENST00000457584.6;ENST00000498311.5;ENST00000396463.6;ENST00000467699.5	17.345	7.308	9.890	0.984(9427)	0.99(695)	0.977(16979)	non tumor-specific	exon_skip	yes
ASTN2_LS028	chr9:117096151|117214358:-	ASTN2	astrotactin 2	protein coding gene	no	ENST00000361209.6;ENST00000361477.7	2.378	0.908	1.850	0.259(2484)	0.299(210)	0.432(7507)	non tumor-specific	exon_skip	yes
ZNF23_LS002	chr16:71449882|71453243:-	ZNF23	zinc finger protein 23	protein coding gene	no	ENST00000393539.6;ENST00000357254.8;ENST00000428724.5	0.610	0.816	1.155	0.488(4676)	0.49(344)	0.604(10496)	non tumor-specific	nAS	yes
NKAIN2_LS008	chr6:124355347|124658186:+	NKAIN2	sodium/potassium transporting ATPase interacting 2	protein coding gene	no	ENST00000368416.5;ENST00000368417.5	3.356	2.681	3.696	0.182(1744)	0.144(101)	0.349(6070)	non tumor-specific	exon_skip	yes
UN_AC233701.1_UP_LS0013	chr17:79632739|79646196:-	AC233701.1	-	lncRNA gene	no	.	2.270	0.824	0.000	0.015(143)	0.036(25)	0(0)	non tumor-specific	nAS	no
UN_PRXL2B_LS0030	chr1:2590090|2590215:-	PRXL2B	peroxiredoxin like 2B	protein coding gene	no	.	2.283	0.525	0.000	0.013(121)	0.006(4)	0(0)	non tumor-specific	nAS	no
CLK2_LS008	chr1:155264550|155264645:-	CLK2	CDC like kinase 2	protein coding gene	no	ENST00000361168.9;ENST00000368361.8;ENST00000476983.5;ENST00000355560.4;ENST00000497188.1	96.462	37.244	99.825	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
F11R_LS001	chr1:160998906|160999043:-	F11R	F11 receptor	protein coding gene	no	ENST00000621309.4;ENST00000368026.10;ENST00000537746.1	181.274	116.343	35.655	0.993(9513)	0.983(690)	0.973(16914)	non tumor-specific	nAS	yes
ARHGAP33_LS022	chr19:35782869|35784172:+	ARHGAP33	Rho GTPase activating protein 33	protein coding gene	no	ENST00000378944.9;ENST00000314737.9;ENST00000007510.8;ENST00000601474.5;ENST00000588248.6;ENST00000591438.1;ENST00000587447.3;ENST00000378944.9;ENST00000314737.9;ENST00000007510.8;ENST00000601474.5;ENST00000588248.6;ENST00000591438.1;ENST00000587447.3	7.767	3.081	15.722	0.887(8500)	0.798(560)	0.974(16922)	non tumor-specific	alt_3prime;alt_5prime	yes
AL356272.1_LS001	chr1:194149856|194197523:+	AL356272.1	-	lncRNA gene	no	ENST00000454538.1	0.373	0.024	0.759	0.024(232)	0.026(18)	0.049(847)	non tumor-specific	nAS	yes
UN_TOMM22_LS0004	chr22:38682095|38682879:+	TOMM22	translocase of outer mitochondrial membrane 22	protein coding gene	no	.	2.079	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
SMG1_LS021	chr16:18838466|18838551:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	ENST00000446231.6;ENST00000565324.5	14.688	8.990	10.274	0.825(7906)	0.917(644)	0.943(16387)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SUMO1P3_UP_LS0007	chr1:160286361|160291257:+	SUMO1P3	SUMO1 pseudogene 3	pseudogene	no	.	0.722	0.357	0.000	0.013(124)	0.057(40)	0(0)	non tumor-specific	nAS	no
SPATA24_LS007	chr5:139401816|139401915:-	SPATA24	spermatogenesis associated 24	protein coding gene	no	ENST00000512761.5;ENST00000507779.2	2.607	1.079	0.674	0.045(430)	0.051(36)	0.042(736)	non tumor-specific	alt_3prime;intron_retention	yes
FAM168A_LS005	chr11:73407643|73419874:-	FAM168A	family with sequence similarity 168 member A	protein coding gene	no	ENST00000450446.6;ENST00000450446.6	0.553	0.348	0.896	0.634(6071)	0.688(483)	0.389(6762)	non tumor-specific	alt_3prime;exon_skip	yes
PNCK_LS001	chrX:153669866|153670489:-	PNCK	pregnancy up-regulated nonubiquitous CaM kinase	protein coding gene	no	ENST00000438984.5	0.370	0.304	1.910	0.274(2627)	0.135(95)	0.275(4773)	non tumor-specific	nAS	yes
UN_RPL23AP35_UP_LS0004	chr2:186305219|186456715:-	RPL23AP35	ribosomal protein L23a pseudogene 35	pseudogene	no	.	2.385	0.276	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	nAS	no
FAF2_LS015	chr5:176496663|176498914:+	FAF2	Fas associated factor family member 2	protein coding gene	no	ENST00000261942.6;ENST00000504983.1	21.378	11.467	21.360	0.988(9469)	0.994(698)	0.978(16995)	non tumor-specific	exon_skip	yes
UN_PML_LS0058	chr15:74035294|74035341:-	PML	PML nuclear body scaffold	protein coding gene	yes	.	2.900	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PSG4_LS013	chr19:43198275|43203886:-	PSG4	pregnancy specific beta-1-glycoprotein 4	protein coding gene	no	ENST00000405312.7;ENST00000244295.13;ENST00000495316.2;ENST00000451895.1;ENST00000600572.1	0.469	0.125	1.615	0.177(1699)	0.246(173)	0.12(2088)	non tumor-specific	exon_skip	yes
ARPC3_LS018	chr12:110443067|110445452:-	ARPC3	actin related protein 2/3 complex subunit 3	protein coding gene	no	ENST00000471641.1	0.487	0.356	1.032	0.776(7436)	0.752(528)	0.542(9414)	non tumor-specific	exon_skip	yes
UN_SLC22A16_UP_LS0006	chr6:110530930|110537576:-	SLC22A16	solute carrier family 22 member 16	protein coding gene	no	.	3.432	0.795	0.000	0.02(191)	0.01(7)	0(0)	non tumor-specific	nAS	no
AC084149.2_LS001	chr2:77672269|77673051:+	AC084149.2	-	lncRNA gene	no	ENST00000438443.1	0.072	0.008	0.773	0.032(310)	0.021(15)	0.013(226)	non tumor-specific	nAS	yes
TBC1D5_LS056	chr3:17586557|17622648:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	ENST00000481396.5;ENST00000423331.6	0.134	0.144	0.725	0.306(2928)	0.481(338)	0.236(4099)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PEAK1_LS013	chr15:77252526|77365163:-	PEAK1	pseudopodium enriched atypical kinase 1	protein coding gene	no	ENST00000560626.6	0.032	0.041	0.633	0.312(2994)	0.449(315)	0.014(246)	non tumor-specific	exon_skip	yes
FKBP7_LS012	chr2:178469785|178478279:-	FKBP7	FKBP prolyl isomerase 7	protein coding gene	no	ENST00000419184.1	0.376	0.238	2.564	0.853(8176)	0.883(620)	0.771(13401)	non tumor-specific	alt_3prime;exon_skip	yes
YBX3_LS009	chr12:10702134|10702259:-	YBX3	Y-box binding protein 3	protein coding gene	no	ENST00000366286.6	0.013	0.047	0.955	0.804(7706)	0.799(561)	0.403(7011)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
AKT2_LS002	chr19:40233951|40234449:-	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	ENST00000497948.5	0.319	0.039	3.646	0.459(4395)	0.476(334)	0.913(15877)	non tumor-specific	alt_5prime;exon_skip	yes
NSA2_LS003	chr5:74769364|74770631:+	NSA2	NSA2 ribosome biogenesis factor	protein coding gene	no	ENST00000296802.9;ENST00000610426.4;ENST00000513356.1;ENST00000515524.1	381.108	226.510	159.543	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_AL158198.1_LS0007	chr6:20265926|20280051:+	AL158198.1	-	lncRNA gene	no	.	4.269	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR5B21_UP_LS0002	chr11:58570713|58578300:-	OR5B21	olfactory receptor family 5 subfamily B member 21	protein coding gene	no	.	1.670	0.242	0.000	0.016(150)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_NTNG2_LS0051	chr9:132243321|132244365:+	NTNG2	netrin G2	protein coding gene	no	.	1.062	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_MT-ND1_LS0069	chrM:3725|4168:-	MT-ND1	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1	protein coding gene	no	.	61.802	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CBR4_UP_LS0023	chr4:169071180|169074153:-	CBR4	carbonyl reductase 4	protein coding gene	no	.	4.299	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MRPS10_LS002	chr6:42208947|42210488:-	MRPS10	mitochondrial ribosomal protein S10	protein coding gene	no	ENST00000053468.3	92.942	55.339	39.102	0.997(9552)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
ZGLP1_LS003	chr19:10305952|10308185:-	ZGLP1	zinc finger GATA like protein 1	protein coding gene	no	ENST00000403903.7;ENST00000403352.1	1.966	0.775	7.796	0.821(7868)	0.754(529)	0.967(16813)	non tumor-specific	nAS	yes
COP1_LS037	chr1:176201345|176206572:-	COP1	COP1 E3 ubiquitin ligase	protein coding gene	no	ENST00000649803.1	1.370	0.143	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	exon_skip	yes
DPP8_LS008	chr15:65454342|65456225:-	DPP8	dipeptidyl peptidase 8	protein coding gene	no	.;.	1.686	0.315	0.000	0(4)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TDGF1_LS005	chr3:46579853|46579951:+	TDGF1	teratocarcinoma-derived growth factor 1	protein coding gene	yes	ENST00000542931.6;ENST00000296145.5	16.384	8.990	1.598	0.224(2145)	0.436(306)	0.373(6488)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
A2ML1_LS033	chr12:8861297|8863797:+	A2ML1	alpha-2-macroglobulin like 1	protein coding gene	no	.;.	4.953	9.544	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ABCC3_LS018	chr17:50658496|50659237:+	ABCC3	ATP binding cassette subfamily C member 3	protein coding gene	no	ENST00000513511.5;ENST00000427699.5;ENST00000285238.12;ENST00000505699.5	28.096	23.934	10.082	0.779(7461)	0.919(645)	0.793(13776)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC007848.1_LS004	chr12:5405456|5405618:+	AC007848.1	-	lncRNA gene	no	ENST00000538430.1	1.703	0.000	0.819	0.011(105)	0(0)	0.054(932)	non tumor-specific	nAS	yes
DDX21_LS013	chr10:68973664|68974670:+	DDX21	DExD-box helicase 21	protein coding gene	no	ENST00000354185.8;ENST00000620315.1	71.851	35.954	27.741	0.974(9336)	0.99(695)	0.977(16990)	non tumor-specific	exon_skip	yes
UN_AC137723.1_LS0001	chr17:82038381|82039181:+	AC137723.1	-	lncRNA gene	no	.	1.720	0.455	0.000	0.014(134)	0.013(9)	0(0)	non tumor-specific	nAS	no
LINC00680-GUSBP4_LS002	chr6:57924591|57926426:-	LINC00680-GUSBP4	-	lncRNA gene	no	ENST00000637710.1;ENST00000636069.1	2.912	1.905	6.540	0.379(3632)	0.443(311)	0.947(16468)	non tumor-specific	nAS	yes
CDS2_LS007	chr20:5173659|5175183:+	CDS2	CDP-diacylglycerol synthase 2	protein coding gene	no	ENST00000460006.5;ENST00000468817.5;ENST00000486875.1	39.094	24.545	30.669	0.986(9448)	0.996(699)	0.979(17015)	non tumor-specific	exon_skip	yes
RAB29_LS008	chr1:205771653|205772496:-	RAB29	RAB29, member RAS oncogene family	protein coding gene	no	ENST00000367139.7;ENST00000235932.8;ENST00000437324.6;ENST00000414729.1;ENST00000533111.1	16.298	16.535	10.442	0.952(9124)	0.987(693)	0.972(16888)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
WASHC2C_LS003	chr10:45727539|45737983:+	WASHC2C	WASH complex subunit 2C	protein coding gene	no	ENST00000359860.7;ENST00000420848.3	0.672	0.394	0.642	0.215(2059)	0.295(207)	0.159(2760)	non tumor-specific	exon_skip	yes
UN_SPINT2_LS0054	chr19:38264952|38283667:-	SPINT2	serine peptidase inhibitor, Kunitz type 2	protein coding gene	yes	.	8.231	0.250	0.000	0.008(73)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EMC1_LS0030	chr1:19233135|19235134:-	EMC1	ER membrane protein complex subunit 1	protein coding gene	no	.	4.557	0.228	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HTR3C_LS002	chr3:184054887|184055312:+	HTR3C	5-hydroxytryptamine receptor 3C	protein coding gene	no	ENST00000318351.1	7.595	0.388	0.814	0.006(59)	0.05(35)	0.028(483)	non tumor-specific	nAS	yes
CHMP5_LS005	chr9:33267899|33270623:+	CHMP5	charged multivesicular body protein 5	protein coding gene	no	ENST00000419016.6;ENST00000223500.8	326.468	226.043	139.826	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
VWA8_LS002	chr13:41570706|41575740:-	VWA8	von Willebrand factor A domain containing 8	protein coding gene	no	ENST00000379310.7	21.134	20.130	14.655	0.969(9283)	0.989(694)	0.977(16979)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CPSF6_LS0012	chr12:69253154|69255960:+	CPSF6	cleavage and polyadenylation specific factor 6	protein coding gene	no	.	1.048	0.266	0.000	0.013(128)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CASC19_LS024	chr8:127185770|127187785:-	CASC19	cancer susceptibility 19	lncRNA gene	no	ENST00000641365.1;ENST00000641001.1;ENST00000641828.1;ENST00000641733.1;ENST00000641964.1;ENST00000642142.1;ENST00000641625.1;ENST00000641171.1;ENST00000641880.1;ENST00000641414.1;ENST00000641965.1;ENST00000641584.1;ENST00000642118.1;ENST00000641392.1;ENST00000642082.1;ENST00000641162.1;ENST00000641106.1;ENST00000641704.1;ENST00000641309.1;ENST00000641218.1;ENST00000642018.1;ENST00000641786.1;ENST00000641968.1;ENST00000641523.1	1.827	0.319	1.081	0.12(1151)	0.04(28)	0.106(1842)	non tumor-specific	nAS	yes
UN_SRBD1_LS0041	chr2:45581810|45599449:-	SRBD1	S1 RNA binding domain 1	protein coding gene	no	.	1.453	0.096	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_XPR1_LS0046	chr1:180873942|180877918:+	XPR1	xenotropic and polytropic retrovirus receptor 1	protein coding gene	no	.	4.180	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_SLC35E2B_LS0038	chr1:1676846|1678903:-	SLC35E2B	solute carrier family 35 member E2B	protein coding gene	no	.	1.003	0.191	0.000	0.006(60)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_PI4KAP2_LS0002	chr22:21474680|21475139:-	PI4KAP2	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudogene	no	.	1.952	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00528_LS0001	chr22:17777696|17778253:+	LINC00528	long intergenic non-protein coding RNA 528	lncRNA gene	no	.	3.148	0.128	0.000	0.007(66)	0.003(2)	0(0)	non tumor-specific	nAS	no
IREB2_LS010	chr15:78466489|78471741:+	IREB2	iron responsive element binding protein 2	protein coding gene	no	ENST00000558570.5	0.238	0.251	0.814	0.294(2814)	0.318(223)	0.384(6670)	non tumor-specific	exon_skip	yes
UN_DHRS4L1_UP_LS0073	chr14:23965782|23990330:+	DHRS4L1	dehydrogenase/reductase 4 like 1	pseudogene	no	.	11.913	2.925	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TEKT2_LS0008	chr1:36087807|36087934:+	TEKT2	tektin 2	protein coding gene	no	.	2.334	1.000	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FBN3_LS024	chr19:8094565|8095375:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	9.457	1.087	1.588	0.172(1651)	0.234(164)	0.269(4680)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PRR5L_LS0051	chr11:36448227|36451209:+	PRR5L	proline rich 5 like	protein coding gene	no	.	0.876	0.601	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
TRIM46_LS002	chr1:155174029|155175386:+	TRIM46	tripartite motif containing 46	protein coding gene	no	ENST00000368385.8;ENST00000543729.5;ENST00000368383.7;ENST00000474430.5;ENST00000334634.8	1.013	0.410	1.424	0.298(2851)	0.06(42)	0.414(7191)	non tumor-specific	alt_3prime;exon_skip	yes
EBPL_LS014	chr13:49686595|49691254:-	EBPL	EBP like	protein coding gene	no	ENST00000495963.2	0.276	0.172	0.724	0.213(2041)	0.211(148)	0.268(4654)	non tumor-specific	exon_skip;mutex_exons	yes
ABCA13_LS031	chr7:48335535|48338365:+	ABCA13	ATP binding cassette subfamily A member 13	protein coding gene	no	ENST00000435803.5;ENST00000611776.4;ENST00000544596.5;ENST00000484268.1	5.176	0.766	1.448	0.17(1624)	0.162(114)	0.18(3121)	non tumor-specific	alt_3prime	yes
UN_YTHDF3_LS0034	chr8:63186966|63187045:-	YTHDF3	YTH N6-methyladenosine RNA binding protein 3	protein coding gene	no	.	3.192	0.815	0.000	0.011(101)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_RN7SL575P_UP_LS0015	chr2:95024257|95025412:-	RN7SL575P	RNA, 7SL, cytoplasmic 575, pseudogene	small non-coding RNA gene	no	.	4.159	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMC8_LS0038	chr17:78141760|78141842:+	TMC8	transmembrane channel like 8	protein coding gene	no	.	6.688	1.894	0.000	0.025(241)	0.013(9)	0(0)	non tumor-specific	intron_retention	no
UN_ANAPC4_LS0020	chr4:25414504|25414649:+	ANAPC4	anaphase promoting complex subunit 4	protein coding gene	no	.	3.983	0.507	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_PPP6R2_LS0119	chr22:50440868|50440980:+	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	.	15.623	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_LINC02302_UP_LS0003	chr14:44798012|44798976:-	LINC02302	long intergenic non-protein coding RNA 2302	lncRNA gene	no	.	3.178	0.245	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
DYNC1I2_LS004	chr2:171688166|171690147:+	DYNC1I2	dynein cytoplasmic 1 intermediate chain 2	protein coding gene	no	ENST00000443458.5;ENST00000412370.5	0.060	0.069	0.703	0.21(2011)	0.197(138)	0.214(3722)	non tumor-specific	nAS	yes
KCNH4_LS015	chr17:42178227|42178331:-	KCNH4	potassium voltage-gated channel subfamily H member 4	protein coding gene	no	ENST00000607371.5;ENST00000264661.3	1.868	0.152	0.928	0.041(391)	0.007(5)	0.263(4577)	non tumor-specific	exon_skip	yes
UN_MMP14_LS0064	chr14:22846081|22846183:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	15.226	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC122129.2_UP_LS0001	chr17:17681125|17683546:+	AC122129.2	-	lncRNA gene	no	.	1.235	0.257	0.000	0.01(99)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
IL7R_LS001	chr5:35852938|35856032:+	IL7R	interleukin 7 receptor	protein coding gene	yes	ENST00000508941.5	0.080	0.004	0.674	0.003(27)	0.003(2)	0.003(46)	non tumor-specific	nAS	yes
UN_GUCY1A1_LS0023	chr4:155718883|155722038:+	GUCY1A1	guanylate cyclase 1 soluble subunit alpha 1	protein coding gene	no	.	1.741	0.329	0.000	0.017(167)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_ZBTB40_LS0010	chr1:22501684|22502341:+	ZBTB40	zinc finger and BTB domain containing 40	protein coding gene	no	.	1.640	0.260	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_KRT5_LS0165	chr12:52519103|52519742:-	KRT5	keratin 5	protein coding gene	no	.	2213.510	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
LINC00608_LS005	chr2:218977990|218979265:+	LINC00608	long intergenic non-protein coding RNA 608	lncRNA gene	no	ENST00000628185.1	0.018	0.010	0.674	0.01(98)	0.011(8)	0.001(11)	non tumor-specific	nAS	yes
EIF1AD_LS011	chr11:66000406|66001910:-	EIF1AD	eukaryotic translation initiation factor 1A domain containing	protein coding gene	no	ENST00000532707.5;ENST00000532707.5	0.674	0.343	2.012	0.906(8676)	0.895(628)	0.853(14835)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CNDP2_LS045	chr18:74513719|74516228:+	CNDP2	carnosine dipeptidase 2	protein coding gene	yes	ENST00000324262.8;ENST00000579847.5;ENST00000324301.12;ENST00000584581.5;ENST00000583695.1;ENST00000581600.1	222.612	184.333	63.887	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
KHDRBS3_LS005	chr8:135521355|135606955:+	KHDRBS3	KH RNA binding domain containing, signal transduction associated 3	protein coding gene	no	ENST00000520981.5	0.240	0.045	0.831	0.096(915)	0.056(39)	0.077(1336)	non tumor-specific	exon_skip	yes
UN_AC107884.2_UP_LS0002	chr11:7657175|7665324:-	AC107884.2	-	lncRNA gene	no	.	1.506	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02197_LS0004	chr5:71357696|71405711:+	LINC02197	long intergenic non-protein coding RNA 2197	lncRNA gene	no	.	1.865	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SNCA_LS005	chr4:89822388|89835547:-	SNCA	synuclein alpha	protein coding gene	no	ENST00000618500.4;ENST00000394989.6;ENST00000505199.5;ENST00000611107.1	0.643	0.709	0.837	0.382(3657)	0.412(289)	0.071(1226)	non tumor-specific	exon_skip	yes
UN_SMIM20_LS0013	chr4:25906834|25914220:-	SMIM20	small integral membrane protein 20	protein coding gene	no	.	1.294	0.126	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
TBC1D1_LS009	chr4:38018443|38020591:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	ENST00000508802.5;ENST00000261439.8;ENST00000446803.6;ENST00000491553.1	41.410	35.971	20.523	0.966(9255)	0.989(694)	0.978(16997)	non tumor-specific	exon_skip	yes
UN_AP005901.2_UP_LS0001	chr18:15184236|15185842:-	AP005901.2	-	lncRNA gene	no	.	3.401	0.493	0.000	0.036(346)	0.007(5)	0(0)	non tumor-specific	nAS	no
ARPC2_LS030	chr2:218249921|218252945:+	ARPC2	actin related protein 2/3 complex subunit 2	protein coding gene	no	ENST00000456575.1	0.100	0.313	0.936	0.355(3401)	0.332(233)	0.491(8532)	non tumor-specific	exon_skip	yes
UN_DBN1_LS0014	chr5:177457105|177457135:+	DBN1	drebrin 1	protein coding gene	no	.	4.730	0.216	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HERC2P10_LS0007	chr15:30832898|30834360:+	HERC2P10	hect domain and RLD 2 pseudogene 10	pseudogene	no	.	2.106	0.075	0.000	0.03(285)	0.007(5)	0(0)	non tumor-specific	nAS	no
EDDM13_LS005	chr19:56285024|56296336:+	EDDM13	epididymal protein 13	protein coding gene	no	ENST00000593116.5	6.067	0.000	0.568	0.001(5)	0(0)	0(5)	non tumor-specific	nAS	yes
HERC1_LS048	chr15:63666472|63669538:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6	9.108	8.980	11.590	0.787(7540)	0.923(648)	0.964(16748)	non tumor-specific	alt_3prime;exon_skip	yes
MYH3_LS034	chr17:10648649|10649577:-	MYH3	myosin heavy chain 3	protein coding gene	no	ENST00000583535.5;ENST00000579489.2	1.658	0.728	2.050	0.243(2332)	0.299(210)	0.813(14125)	non tumor-specific	nAS	yes
UN_MIR320B1_UP_LS0003	chr1:116466291|116530389:+	MIR320B1	microRNA 320b-1	small non-coding RNA gene	no	.	8.127	0.179	0.000	0.012(119)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RN7SL468P_UP_LS0001	chr2:118860709|118969160:+	RN7SL468P	RNA, 7SL, cytoplasmic 468, pseudogene	small non-coding RNA gene	no	.	2.822	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
KCNH8_LS008	chr3:19390638|19391691:+	KCNH8	potassium voltage-gated channel subfamily H member 8	protein coding gene	no	ENST00000475063.1	0.415	0.000	0.801	0(1)	0(0)	0.003(56)	non tumor-specific	exon_skip	yes
ITGA7_LS031	chr12:55697822|55697938:-	ITGA7	integrin subunit alpha 7	protein coding gene	yes	ENST00000553804.5;ENST00000257879.10;ENST00000347027.10;ENST00000452168.6;ENST00000555728.5;ENST00000557488.1;ENST00000556273.5	14.292	17.171	72.705	0.933(8938)	0.94(660)	0.977(16974)	non tumor-specific	alt_3prime	yes
UN_Z98259.1_UP_LS0009	chr1:4998698|5011003:+	Z98259.1	-	lncRNA gene	no	.	5.583	2.065	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
C14orf180_LS002	chr14:104581625|104586415:+	C14orf180	chromosome 14 open reading frame 180	protein coding gene	no	ENST00000410013.1	1.307	0.484	2.239	0.051(485)	0.269(189)	0.437(7598)	non tumor-specific	alt_5prime	yes
PITPNM2_LS036	chr12:123004603|123005240:-	PITPNM2	phosphatidylinositol transfer protein membrane associated 2	protein coding gene	no	ENST00000546049.5	0.904	0.109	0.651	0.012(118)	0.031(22)	0.009(155)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UPP2_LS0048	chr2:158123895|158127965:+	UPP2	uridine phosphorylase 2	protein coding gene	no	.	3.234	11.425	0.000	0.01(94)	0.113(79)	0(0)	non tumor-specific	exon_skip	no
UN_GNG12_LS0040	chr1:67777507|67828375:-	GNG12	G protein subunit gamma 12	protein coding gene	no	.	1.213	0.428	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SLC29A4_LS0046	chr7:5301077|5302827:+	SLC29A4	solute carrier family 29 member 4	protein coding gene	no	.	5.054	0.401	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ABCA4_LS009	chr1:94008297|94008751:-	ABCA4	ATP binding cassette subfamily A member 4	protein coding gene	no	ENST00000536513.5;ENST00000370225.3;ENST00000465352.1	2.313	2.372	1.185	0.268(2567)	0.413(290)	0.459(7976)	non tumor-specific	nAS	yes
COL5A2_LS003	chr2:189036803|189039272:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	ENST00000374866.8;ENST00000618828.1;ENST00000649066.1	97.564	35.679	62.269	0.962(9217)	0.984(691)	0.949(16499)	non tumor-specific	nAS	yes
ATP6V0A1_LS038	chr17:42508589|42513861:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	ENST00000585525.5;ENST00000343619.8;ENST00000544137.5;ENST00000586201.5;ENST00000588138.1	7.189	13.947	2.806	0.211(2020)	0.222(156)	0.427(7428)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC245517.2_UP_LS0001	chr22:22031042|22162372:+	AC245517.2	-	pseudogene	no	.	38.278	5.018	0.000	0.005(49)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_TESK2_LS0039	chr1:45488604|45490075:-	TESK2	testis associated actin remodelling kinase 2	protein coding gene	no	.	0.925	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SCAF4_LS001	chr21:31672354|31685049:-	SCAF4	SR-related CTD associated factor 4	protein coding gene	no	ENST00000286835.11;ENST00000399804.5;ENST00000434667.3	51.636	24.307	30.693	0.942(9029)	0.956(671)	0.979(17019)	non tumor-specific	nAS	yes
ADIPOR2_LS003	chr12:1691213|1702886:+	ADIPOR2	adiponectin receptor 2	protein coding gene	no	ENST00000540974.1	0.678	0.489	0.852	0.283(2716)	0.362(254)	0.415(7219)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SATB2_LS010	chr2:199381820|199433338:-	SATB2	SATB homeobox 2	protein coding gene	no	ENST00000417098.5;ENST00000260926.9;ENST00000457245.5	5.914	6.176	1.974	0.575(5513)	0.544(382)	0.748(13008)	non tumor-specific	exon_skip	yes
UN_TRAF3IP2-AS1_LS0001	chr6:111483665|111484712:+	TRAF3IP2-AS1	TRAF3IP2 antisense RNA 1	lncRNA gene	no	.	1.604	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
EYA1_LS004	chr8:71215728|71216692:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000388742.8;ENST00000644427.1;ENST00000340726.7;ENST00000419131.6;ENST00000388740.4;ENST00000465115.6;ENST00000303824.11;ENST00000642391.1;ENST00000644424.1;ENST00000645793.1;ENST00000647540.1;ENST00000643681.1;ENST00000644229.1;ENST00000644712.1;ENST00000388741.7;ENST00000388743.6;ENST00000496494.6;ENST00000493349.2	6.538	1.479	2.214	0.281(2691)	0.261(183)	0.459(7981)	non tumor-specific	alt_5prime	yes
ERN2_LS026	chr16:23700704|23700963:-	ERN2	endoplasmic reticulum to nucleus signaling 2	protein coding gene	no	.;.	49.561	27.912	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HCG23_LS003	chr6:32255414|32365780:+	HCG23	HLA complex group 23	lncRNA gene	no	ENST00000645167.1	2.230	0.691	0.000	0.051(490)	0.088(62)	0(0)	non tumor-specific	nAS	yes
CLEC4G_LS004	chr19:7730440|7730755:-	CLEC4G	C-type lectin domain family 4 member G	protein coding gene	no	ENST00000328853.9	3.019	7.638	2.377	0.108(1038)	0.283(199)	0.641(11147)	non tumor-specific	nAS	yes
WHRN_LS002	chr9:114403339|114403896:-	WHRN	whirlin	protein coding gene	no	ENST00000265134.10;ENST00000374059.7;ENST00000362057.3	21.215	13.173	22.239	0.946(9064)	0.937(658)	0.952(16547)	non tumor-specific	nAS	yes
UN_STK17B_LS0003	chr2:196135750|196135814:-	STK17B	serine/threonine kinase 17b	protein coding gene	no	.	18.110	1.645	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPP6R3_LS059	chr11:68596218|68600341:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000393800.6;ENST00000534534.5;ENST00000524845.5;ENST00000265637.8;ENST00000524904.5;ENST00000393801.7;ENST00000265636.9;ENST00000529710.5;ENST00000527403.6;ENST00000534190.5;ENST00000526307.5	70.120	47.923	54.931	0.983(9414)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_MFSD4B_LS0004	chr6:111262425|111265876:+	MFSD4B	major facilitator superfamily domain containing 4B	protein coding gene	no	.	0.827	0.001	0.000	0.01(93)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RABEP1_LS0004	chr17:5297514|5308694:+	RABEP1	rabaptin, RAB GTPase binding effector protein 1	protein coding gene	no	.	2.656	0.694	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_MKKS_LS0021	chr20:10412952|10413796:-	MKKS	McKusick-Kaufman syndrome	protein coding gene	no	.	8.260	0.291	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
TP53I13_LS010	chr17:29568548|29569018:+	TP53I13	tumor protein p53 inducible protein 13	protein coding gene	no	ENST00000583940.5;ENST00000582829.6;ENST00000577934.5	6.520	3.769	6.182	0.938(8983)	0.953(669)	0.946(16444)	non tumor-specific	alt_5prime;exon_skip	yes
GON4L_LS030	chr1:155784089|155785334:-	GON4L	gon-4 like	protein coding gene	no	ENST00000368331.5;ENST00000615926.4;ENST00000437809.5;ENST00000271883.9;ENST00000620426.4;ENST00000361040.9;ENST00000471341.5;ENST00000622608.1;ENST00000482386.5	5.970	3.820	11.964	0.901(8633)	0.947(665)	0.971(16885)	non tumor-specific	exon_skip	yes
AC211476.5_LS003	chr7:73044560|73065531:+	AC211476.5	-	lncRNA gene	no	ENST00000650609.1	5.720	0.893	0.000	0.041(391)	0.031(22)	0(0)	non tumor-specific	nAS	yes
UN_TOR1B_LS0009	chr9:129804338|129808905:+	TOR1B	torsin family 1 member B	protein coding gene	no	.	1.128	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SENP2_UP_LS0017	chr3:185499770|185503444:+	SENP2	SUMO specific peptidase 2	protein coding gene	no	.	1.185	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTF1_LS012	chr1:37857709|37859531:-	MTF1	myelin transcription factor 1	protein coding gene	no	ENST00000373036.4	4.626	3.472	2.673	0.779(7468)	0.885(621)	0.88(15292)	non tumor-specific	exon_skip	yes
UN_AC079760.2_LS0036	chr7:91418704|91420743:-	AC079760.2	-	lncRNA gene	no	.	1.808	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
WDSUB1_LS011	chr2:159279945|159282672:-	WDSUB1	WD repeat, sterile alpha motif and U-box domain containing 1	protein coding gene	no	ENST00000359774.8;ENST00000358147.8;ENST00000392796.7;ENST00000409990.7;ENST00000409124.1	15.326	13.341	9.024	0.969(9286)	0.984(691)	0.973(16912)	non tumor-specific	exon_skip;mutex_exons	yes
SUV39H2_LS014	chr10:14896977|14899539:+	SUV39H2	suppressor of variegation 3-9 homolog 2	protein coding gene	no	ENST00000433779.5;ENST00000378325.7	0.632	0.245	0.780	0.629(6029)	0.452(317)	0.279(4857)	non tumor-specific	alt_5prime;exon_skip	yes
WISP2_LS001	chr20:44715161|44715366:+	WISP2	cellular communication network factor 5	protein coding gene	no	ENST00000372868.6	1.231	3.861	12.411	0.416(3988)	0.712(500)	0.805(13984)	non tumor-specific	alt_3prime;intron_retention	yes
UN_TTC31_LS0002	chr2:74489287|74490025:+	TTC31	tetratricopeptide repeat domain 31	protein coding gene	no	.	1.937	1.215	0.000	0.01(96)	0.013(9)	0(0)	non tumor-specific	nAS	no
RIOX2_LS014	chr3:97967632|97971590:-	RIOX2	ribosomal oxygenase 2	protein coding gene	no	ENST00000506099.1	0.327	0.215	0.739	0.386(3699)	0.489(343)	0.245(4259)	non tumor-specific	exon_skip	yes
TCF12_LS022	chr15:57219590|57231152:+	TCF12	transcription factor 12	protein coding gene	no	ENST00000560764.5;ENST00000543579.5;ENST00000537840.5;ENST00000343827.7	2.976	0.276	1.611	0.544(5213)	0.618(434)	0.509(8847)	non tumor-specific	exon_skip	yes
AP4M1_LS027	chr7:100106003|100106241:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	ENST00000438383.5;ENST00000445208.5;ENST00000429084.5;ENST00000359593.8;ENST00000446007.5;ENST00000421755.5;ENST00000416938.5;ENST00000422582.5;ENST00000450807.5;ENST00000445295.1;ENST00000438383.5;ENST00000445208.5;ENST00000429084.5;ENST00000359593.8;ENST00000446007.5;ENST00000421755.5;ENST00000416938.5;ENST00000422582.5;ENST00000450807.5;ENST00000445295.1	25.533	12.902	18.586	0.994(9523)	0.993(697)	0.978(17000)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SH2B3_LS0001	chr12:111406277|111415642:+	SH2B3	SH2B adaptor protein 3	protein coding gene	yes	.	0.643	0.017	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_POU5F1_UP_LS0006	chr6:31185799|31186026:-	POU5F1	POU class 5 homeobox 1	protein coding gene	no	.	2.116	1.341	0.000	0.108(1033)	0.108(76)	0(0)	non tumor-specific	nAS	no
FMC1_LS005	chr7:139341522|139345501:+	FMC1	formation of mitochondrial complex V assembly factor 1 homolog	protein coding gene	no	ENST00000297534.6	103.789	65.864	84.100	0.994(9524)	0.996(699)	0.979(17021)	non tumor-specific	nAS	yes
UN_TRIP10_LS0018	chr19:6744994|6745635:+	TRIP10	thyroid hormone receptor interactor 10	protein coding gene	no	.	9.918	0.675	0.000	0.015(144)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NR2F2-AS1_LS005	chr15:96127413|96131822:-	NR2F2-AS1	NR2F2 antisense RNA 1	lncRNA gene	no	ENST00000620029.4;ENST00000560800.5	0.779	0.301	1.768	0.034(325)	0.141(99)	0.594(10321)	non tumor-specific	nAS	yes
PKD1P5_LS023	chr16:18389534|18389714:-	PKD1P5	polycystin 1, transient receptor potential channel interacting pseudogene 5	pseudogene	no	ENST00000532415.5;ENST00000542593.5;ENST00000545970.1	4.110	2.716	1.889	0.652(6251)	0.697(489)	0.342(5946)	non tumor-specific	nAS	yes
DCHS2_LS018	chr4:154331714|154332478:-	DCHS2	dachsous cadherin-related 2	protein coding gene	no	ENST00000623607.4	1.591	0.000	0.656	0.001(10)	0(0)	0.004(68)	non tumor-specific	exon_skip	yes
UN_PPP6R2_LS0131	chr22:50441275|50443866:+	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	.	5.749	0.981	0.000	0.016(153)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TMEM258_LS013	chr11:61790602|61791463:-	TMEM258	transmembrane protein 258	protein coding gene	no	ENST00000543510.1	0.082	0.352	1.050	0.978(9373)	0.984(691)	0.572(9950)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LLGL2_LS0092	chr17:75575023|75575070:-	LLGL2	LLGL scribble cell polarity complex component 2	protein coding gene	no	.	5.245	0.400	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNOT1_LS040	chr16:58549898|58551132:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	ENST00000317147.9;ENST00000569240.5;ENST00000567188.5;ENST00000441024.6;ENST00000567285.1	53.981	37.226	26.448	0.944(9043)	0.983(690)	0.978(17001)	non tumor-specific	alt_3prime	yes
UN_POLR3E_LS0022	chr16:22326929|22328510:+	POLR3E	RNA polymerase III subunit E	protein coding gene	no	.	2.005	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AL591485.1_LS015	chr6:8470132|8473555:+	AL591485.1	-	no	no	ENST00000646521.1	1.011	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_AL122001.1_UP_LS0006	chr1:46368655|46368772:+	AL122001.1	-	pseudogene	no	.	1.008	0.074	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
UTRN_LS055	chr6:144554893|144557157:+	UTRN	utrophin	protein coding gene	no	ENST00000367545.7	15.713	20.874	16.380	0.84(8046)	0.967(679)	0.968(16828)	non tumor-specific	exon_skip	yes
UN_DHDH_LS0003	chr19:48934783|48935000:+	DHDH	dihydrodiol dehydrogenase	protein coding gene	no	.	1.984	0.847	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCER2_LS003	chr19:38911083|38911566:-	CCER2	coiled-coil glutamate rich protein 2	protein coding gene	no	ENST00000571838.1	0.957	0.406	2.706	0.274(2622)	0.137(96)	0.814(14143)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CA8_UP_LS0011	chr8:60333003|60356729:-	CA8	carbonic anhydrase 8	protein coding gene	no	.	1.351	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHDC1_LS0030	chr1:27547786|27547817:+	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	2.956	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POU2AF1_LS0032	chr11:111399242|111404621:-	POU2AF1	POU class 2 homeobox associating factor 1	protein coding gene	no	.	2.787	0.523	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
TFR2_LS030	chr7:100641228|100641477:-	TFR2	transferrin receptor 2	protein coding gene	no	ENST00000223051.7;ENST00000431692.5;ENST00000465294.5;ENST00000462107.1;ENST00000474947.1	13.280	27.278	1.621	0.091(868)	0.114(80)	0.147(2553)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AHNAK_LS0644	chr11:62522139|62525416:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	10.072	5.909	0.000	0.005(46)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_FGR_LS0022	chr1:27623144|27623453:-	FGR	FGR proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	.	2.673	0.397	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PPP6R2_LS0018	chr22:50381248|50381425:-	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	.	3.834	0.395	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ENG_LS0095	chr9:127826672|127843094:-	ENG	endoglin	protein coding gene	no	.	1.112	0.089	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PTPRH_LS001	chr19:55181903|55182016:-	PTPRH	protein tyrosine phosphatase receptor type H	protein coding gene	no	ENST00000376350.7;ENST00000263434.5	20.637	20.164	2.578	0.528(5058)	0.321(225)	0.649(11278)	non tumor-specific	alt_3prime	yes
UN_ERVH48-1_LS0002	chr21:42920066|42920119:+	ERVH48-1	endogenous retrovirus group 48 member 1	lncRNA gene	no	.	1.293	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NME4_LS0036	chr16:399414|400383:-	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	.	4.573	0.530	0.000	0.014(133)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL450332.1_LS007	chr6:125408622|125445022:-	AL450332.1	-	lncRNA gene	no	ENST00000638742.1	1.736	0.818	1.270	0.008(73)	0.006(4)	0.251(4371)	non tumor-specific	nAS	yes
UN_LINC01527_UP_LS0005	chr1:152969031|152970061:-	LINC01527	long intergenic non-protein coding RNA 1527	lncRNA gene	no	.	3.665	0.425	0.000	0.015(148)	0.011(8)	0(0)	non tumor-specific	nAS	no
HUWE1_LS072	chrX:53615835|53616970:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12;ENST00000489876.1	24.186	19.858	12.032	0.89(8531)	0.953(669)	0.961(16703)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MIR3648-2_UP_LS0005	chr21:8850122|8857288:+	MIR3648-2	microRNA 3648-2	small non-coding RNA gene	no	.	0.766	0.627	0.000	0.001(11)	0.066(46)	0(0)	non tumor-specific	nAS	no
TLK2_LS023	chr17:62552397|62560016:+	TLK2	tousled like kinase 2	protein coding gene	no	ENST00000578697.1	0.221	0.100	1.140	0.538(5156)	0.605(425)	0.594(10331)	non tumor-specific	exon_skip	yes
KRT17P1_LS003	chr17:16842183|16842270:-	KRT17P1	keratin 17 pseudogene 1	pseudogene	no	ENST00000399211.8;ENST00000582047.1	3.752	1.325	1.240	0.329(3154)	0.239(168)	0.207(3597)	non tumor-specific	nAS	yes
ZNF266_LS017	chr19:9420218|9434065:-	ZNF266	zinc finger protein 266	protein coding gene	no	ENST00000588933.5	0.191	0.178	0.882	0.338(3237)	0.33(232)	0.418(7264)	non tumor-specific	alt_5prime;exon_skip	yes
CA11_LS006	chr19:48639053|48639305:-	CA11	gastrokine 1	protein coding gene	no	ENST00000084798.8;ENST00000596080.1	61.138	92.266	51.486	0.952(9120)	0.977(686)	0.976(16963)	non tumor-specific	alt_3prime;alt_5prime	yes
C12orf75_LS004	chr12:105330937|105366617:+	C12orf75	chromosome 12 open reading frame 75	protein coding gene	no	ENST00000552457.1	0.254	0.261	0.649	0.772(7394)	0.782(549)	0.044(762)	non tumor-specific	exon_skip	yes
PCDH15_LS060	chr10:54346484|54369120:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000373965.6;ENST00000644397.1;ENST00000614895.4;ENST00000414778.5;ENST00000616114.4;ENST00000621708.4;ENST00000395442.5;ENST00000395440.5;ENST00000617271.4;ENST00000395446.5;ENST00000414367.5;ENST00000613657.4;ENST00000395445.5;ENST00000395438.5;ENST00000612394.4;ENST00000395432.6;ENST00000617051.4;ENST00000622048.4;ENST00000361849.7;ENST00000395430.5;ENST00000395433.5;ENST00000373956.7;ENST00000373957.7;ENST00000448885.5;ENST00000437009.5;ENST00000320301.10;ENST00000373955.5	21.145	0.390	1.680	0.06(571)	0.083(58)	0.176(3055)	non tumor-specific	nAS	yes
UN_EPHB6_LS0023	chr7:142866605|142866999:+	EPHB6	EPH receptor B6	protein coding gene	yes	.	2.869	1.422	0.000	0.01(92)	0.014(10)	0(0)	non tumor-specific	alt_3prime	no
UN_DGCR8_LS0023	chr22:20106674|20107271:+	DGCR8	DGCR8 microprocessor complex subunit	protein coding gene	no	.	4.749	2.548	0.000	0.008(77)	0.019(13)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ADAT1_LS002	chr16:75598331|75603085:-	ADAT1	adenosine deaminase tRNA specific 1	protein coding gene	no	ENST00000566450.5	0.471	0.211	0.674	0.424(4058)	0.444(312)	0.166(2889)	non tumor-specific	nAS	yes
UN_PLEKHM1P1_LS0031	chr17:64815245|64821767:+	PLEKHM1P1	pleckstrin homology and RUN domain containing M1 pseudogene 1	pseudogene	no	.	3.750	1.344	0.000	0.091(872)	0.083(58)	0(0)	non tumor-specific	nAS	no
UN_MYH16_LS0006	chr7:99278425|99290877:-	MYH16	myosin heavy chain 16 pseudogene	pseudogene	no	.	2.561	0.094	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GORASP1_LS0037	chr3:39099487|39100370:+	GORASP1	golgi reassembly stacking protein 1	protein coding gene	no	.	1.564	0.653	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPS14_LS0033	chr5:150449601|150449703:-	RPS14	ribosomal protein S14	protein coding gene	no	.	2.372	0.000	0.000	0.006(55)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
ACSM2A_LS012	chr16:20451681|20465517:+	ACSM2A	acyl-CoA synthetase medium chain family member 2A	protein coding gene	no	ENST00000417235.6;ENST00000575558.5;ENST00000417235.6;ENST00000575558.5	0.812	0.559	4.227	0.087(830)	0.191(134)	0.025(428)	non tumor-specific	alt_5prime;exon_skip	yes
UN_JARID2_LS0035	chr6:15495912|15496132:+	JARID2	jumonji and AT-rich interaction domain containing 2	protein coding gene	no	.	2.213	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TNNC1_UP_LS0002	chr3:52514746|52528637:-	TNNC1	troponin I3, cardiac type	protein coding gene	no	.	20.702	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DNAI1_LS0009	chr9:34506874|34514394:+	DNAI1	dynein axonemal intermediate chain 1	protein coding gene	no	.	3.319	1.192	0.000	0.022(207)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PALLD_LS0040	chr4:168863621|168863880:-	PALLD	palladin, cytoskeletal associated protein	protein coding gene	no	.	1.649	0.038	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC138409.2_UP_LS0021	chr5:34306142|34306677:-	AC138409.2	-	pseudogene	no	.	1.892	0.093	0.000	0.024(230)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ABHD18_LS0001	chr4:127965430|127982939:+	ABHD18	abhydrolase domain containing 18	protein coding gene	no	.	0.223	0.276	0.000	0.004(40)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_BCAP31_LS0082	chrX:153701742|153702007:-	BCAP31	B cell receptor associated protein 31	protein coding gene	no	.	5.442	0.458	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
ATRX_LS057	chrX:77698629|77785982:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000623321.3;ENST00000624668.3	0.341	0.199	0.744	0.392(3756)	0.52(365)	0.287(4983)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ARHGAP21_LS0023	chr10:24591379|24591642:-	ARHGAP21	Rho GTPase activating protein 21	protein coding gene	no	.	2.512	0.644	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ARPC4-TTLL3_LS0018	chr3:9806389|9806454:-	ARPC4-TTLL3	ARPC4-TTLL3 readthrough	protein coding gene	no	.	4.861	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TJP1_LS0005	chr15:29701689|29703325:-	TJP1	tight junction protein 1	protein coding gene	no	.	3.541	2.069	0.000	0.198(1900)	0.155(109)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC092681.1_UP_LS0004	chr7:149909705|150220245:-	AC092681.1	-	pseudogene	no	.	0.650	0.191	0.000	0.02(192)	0.004(3)	0(0)	non tumor-specific	nAS	no
KAZN_LS020	chr1:15101774|15103359:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	ENST00000636203.1;ENST00000376030.6	3.843	2.665	3.602	0.255(2446)	0.429(301)	0.823(14309)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AP005230.1_LS0105	chr18:2409356|2411370:-	AP005230.1	-	lncRNA gene	no	.	2.587	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
IDH3A_LS011	chr15:78154819|78155213:+	IDH3A	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein coding gene	no	ENST00000560770.5	0.159	0.011	0.619	0.016(158)	0.014(10)	0.032(563)	non tumor-specific	exon_skip	yes
UN_AC046144.1_UP_LS0006	chr3:104283116|104290419:-	AC046144.1	-	pseudogene	no	.	9.435	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CRIPT_LS005	chr2:46623867|46624163:+	CRIPT	CXXC repeat containing interactor of PDZ3 domain	protein coding gene	no	ENST00000486447.1;ENST00000238892.3	39.023	21.368	41.314	0.937(8975)	0.916(643)	0.979(17020)	non tumor-specific	nAS	yes
UN_TET1_LS0014	chr10:68647005|68648155:+	TET1	tet methylcytosine dioxygenase 1	protein coding gene	no	.	1.834	0.098	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MRPS18B_LS0004	chr6:30625556|30625621:-	MRPS18B	mitochondrial ribosomal protein S18B	protein coding gene	no	.	0.817	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PHF8_LS0027	chrX:53938672|53938724:+	PHF8	PHD finger protein 8	protein coding gene	no	.	2.654	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRRC2B_LS0017	chr9:131418246|131430090:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	.	1.122	0.455	0.000	0.007(69)	0.01(7)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TFEB_LS019	chr6:41691235|41734313:-	TFEB	transcription factor EB	protein coding gene	no	ENST00000403298.8;ENST00000419396.5	0.014	0.001	0.622	0.325(3111)	0.403(283)	0.036(631)	non tumor-specific	nAS	yes
SERGEF_LS018	chr11:17918779|17959470:-	SERGEF	secretion regulating guanine nucleotide exchange factor	protein coding gene	no	ENST00000525422.5	0.067	0.031	1.045	0.121(1157)	0.115(81)	0.467(8121)	non tumor-specific	exon_skip;mutex_exons	yes
CACNA1G_LS013	chr17:50591853|50591937:+	CACNA1G	calcium voltage-gated channel subunit alpha1 G	protein coding gene	no	ENST00000360761.8;ENST00000354983.8;ENST00000352832.9;ENST00000442258.6;ENST00000416767.8;ENST00000502264.5;ENST00000512389.5;ENST00000513964.5;ENST00000514717.5;ENST00000510366.5;ENST00000503485.5;ENST00000507510.6;ENST00000511765.5;ENST00000507336.5;ENST00000506406.5;ENST00000504076.5;ENST00000513689.6;ENST00000507609.5;ENST00000503436.5;ENST00000510115.5;ENST00000515165.5;ENST00000514181.5;ENST00000515765.5;ENST00000514079.5;ENST00000507896.5;ENST00000511768.5;ENST00000505165.5;ENST00000503607.5;ENST00000515411.5;ENST00000429973.6;ENST00000359106.9;ENST00000358244.9	4.590	1.137	1.564	0.099(944)	0.08(56)	0.423(7347)	non tumor-specific	nAS	yes
KCNE2_LS001	chr21:34364151|34370467:+	KCNE2	potassium voltage-gated channel subfamily E regulatory subunit 2	protein coding gene	no	ENST00000290310.3	0.662	24.010	1.181	0.326(3127)	0.494(347)	0.469(8144)	non tumor-specific	nAS	yes
CORO7_LS009	chr16:4360363|4360444:-	CORO7	coronin 7	protein coding gene	no	ENST00000251166.8;ENST00000571227.5;ENST00000537233.6;ENST00000574025.5;ENST00000575531.5;ENST00000575714.5;ENST00000572666.5;ENST00000574311.5	52.029	21.170	35.405	0.99(9484)	0.994(698)	0.979(17020)	non tumor-specific	nAS	yes
UN_PHB2_LS0022	chr12:6968587|6969498:-	PHB2	prohibitin 2	protein coding gene	no	.	89.377	3.267	0.000	0.006(55)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
ARHGAP27P1-BPTFP1-KPNA2P3_LS002	chr17:64750723|64751807:-	ARHGAP27P1-BPTFP1-KPNA2P3	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	lncRNA gene	no	ENST00000578492.5	3.293	1.343	1.896	0.574(5503)	0.407(286)	0.79(13731)	non tumor-specific	nAS	yes
ZFP90_LS021	chr16:68558568|68575791:+	ZFP90	ZFP90 zinc finger protein	protein coding gene	no	ENST00000611381.4;ENST00000573113.3	0.851	0.566	1.777	0.695(6661)	0.661(464)	0.728(12657)	non tumor-specific	exon_skip	yes
UN_KRT73-AS1_UP_LS0027	chr12:52433899|52451632:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	92.083	30.779	0.000	0.085(812)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_ACACA_LS0075	chr17:37339850|37358994:-	ACACA	acetyl-CoA carboxylase alpha	protein coding gene	no	.	0.787	0.030	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	nAS	no
ADGRD2_LS027	chr9:124475487|124475571:+	ADGRD2	adhesion G protein-coupled receptor D2	protein coding gene	no	ENST00000334810.5;ENST00000638310.1;ENST00000610875.1	8.780	1.050	1.881	0.013(123)	0.063(44)	0.179(3115)	non tumor-specific	nAS	yes
UN_AL121871.1_UP_LS0003	chrX:92827406|93025782:-	AL121871.1	-	pseudogene	no	.	1.638	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PREX1_LS0060	chr20:48821480|48821820:-	PREX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein coding gene	no	.	1.527	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
STPG4_LS008	chr2:47130260|47151258:-	STPG4	sperm-tail PG-rich repeat containing 4	protein coding gene	no	ENST00000449846.5;ENST00000445927.6;ENST00000294947.2	1.268	0.038	0.757	0.004(35)	0.001(1)	0.2(3468)	non tumor-specific	nAS	yes
EWSAT1_LS010	chr15:69091114|69091692:+	EWSAT1	Ewing sarcoma associated transcript 1	lncRNA gene	no	ENST00000415504.5;ENST00000559964.5;ENST00000440444.1	1.225	0.324	0.830	0.078(748)	0.171(120)	0.107(1860)	non tumor-specific	nAS	yes
UN_CEACAM18_LS0005	chr19:51478694|51490587:+	CEACAM18	CEA cell adhesion molecule 18	protein coding gene	no	.	3.838	1.002	0.000	0.006(55)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM131L_LS0035	chr4:153603452|153603849:+	TMEM131L	transmembrane 131 like	protein coding gene	no	.	2.342	0.556	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
METTL11B_LS002	chr1:170158117|170160518:+	METTL11B	methyltransferase like 11B	protein coding gene	no	ENST00000367764.3	3.102	0.000	1.290	0.017(164)	0(0)	0.049(844)	non tumor-specific	exon_skip	yes
KIF21B_LS017	chr1:200988544|200988766:-	KIF21B	kinesin family member 21B	protein coding gene	no	ENST00000332129.6;ENST00000461742.6;ENST00000360529.9;ENST00000422435.2	5.225	3.352	2.468	0.483(4624)	0.385(270)	0.764(13283)	non tumor-specific	alt_5prime	yes
EIF4G3_LS044	chr1:20997633|21002713:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000356916.7	1.884	1.361	1.790	0.124(1190)	0.17(119)	0.732(12731)	non tumor-specific	exon_skip;mutex_exons	yes
LINC01255_LS005	chr18:11505924|11506532:+	LINC01255	long intergenic non-protein coding RNA 1255	lncRNA gene	no	ENST00000586145.1	0.211	0.000	0.651	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
IARS_LS034	chr9:92265553|92268174:-	IARS	isoleucyl-tRNA synthetase 1	protein coding gene	no	ENST00000375643.7;ENST00000627121.2;ENST00000443024.6;ENST00000447699.6	91.384	50.537	36.744	0.945(9052)	0.983(690)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_AC000120.3_LS0022	chr7:92214002|92214611:-	AC000120.3	-	protein coding gene	no	.	3.293	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_PIGO_LS0018	chr9:35091533|35092543:-	PIGO	phosphatidylinositol glycan anchor biosynthesis class O	protein coding gene	no	.	8.112	2.031	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_ADSSL1_UP_LS0006	chr14:104689245|104701357:+	ADSSL1	adenylosuccinate synthase 1	protein coding gene	no	.	1.320	0.115	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_DPP9_LS0013	chr19:4679969|4682696:-	DPP9	dipeptidyl peptidase 9	protein coding gene	no	.	9.473	0.680	0.000	0.009(84)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_ITGB1BP1_LS0017	chr2:9406281|9406562:-	ITGB1BP1	integrin subunit beta 1 binding protein 1	protein coding gene	no	.	1.025	2.254	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRKAR1B_LS001	chr7:550602|551389:-	PRKAR1B	protein kinase cAMP-dependent type I regulatory subunit beta	protein coding gene	no	ENST00000544935.5;ENST00000537384.5;ENST00000406797.5;ENST00000403562.5;ENST00000360274.8;ENST00000400758.6	63.020	77.735	19.560	0.966(9258)	0.956(671)	0.977(16987)	non tumor-specific	alt_5prime	yes
PPP2R5C_LS037	chr14:101883562|101889982:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	ENST00000557534.1	0.077	0.091	0.672	0.098(942)	0.098(69)	0.105(1827)	non tumor-specific	exon_skip;mutex_exons	yes
UN_IPO9_LS0009	chr1:201855182|201857096:+	IPO9	importin 9	protein coding gene	no	.	4.838	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
PDGFB_LS009	chr22:39235874|39243901:-	PDGFB	platelet derived growth factor subunit B	protein coding gene	yes	ENST00000331163.10	8.111	7.412	7.520	0.852(8161)	0.905(635)	0.9(15648)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RHOB_LS0111	chr2:20448359|20448381:-	RHOB	ras homolog family member B	protein coding gene	yes	.	4.479	0.745	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNF24_LS0038	chr20:3974400|4015201:-	RNF24	ring finger protein 24	protein coding gene	no	.	1.560	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SUPT5H_LS021	chr19:39459249|39459559:+	SUPT5H	SPT5 homolog, DSIF elongation factor subunit	protein coding gene	no	ENST00000599117.5;ENST00000432763.6;ENST00000402194.6;ENST00000359191.10;ENST00000598725.5;ENST00000598459.5;ENST00000593727.1;ENST00000599907.1	73.948	43.208	84.820	0.994(9523)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_SMAD2_LS0027	chr18:47873955|47896521:-	SMAD2	SMAD family member 2	protein coding gene	yes	.	0.672	0.403	0.000	0.013(129)	0.023(16)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MYH14_LS043	chr19:50281842|50286482:+	MYH14	myosin heavy chain 14	protein coding gene	no	ENST00000598205.5;ENST00000440075.6;ENST00000425460.5;ENST00000376970.6;ENST00000642316.1;ENST00000601313.6;ENST00000596571.5;ENST00000262269.12	79.592	75.163	35.457	0.899(8611)	0.973(683)	0.894(15545)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FP236383.1_LS0174	chr21:8396750|8397154:-	FP236383.1	-	lncRNA gene	no	.	2.958	32.278	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_OFCC1_LS0012	chr6:10141254|10141621:+	OFCC1	orofacial cleft 1 candidate 1	pseudogene	no	.	1.175	0.095	0.000	0.004(36)	0.01(7)	0(0)	non tumor-specific	nAS	no
PRPF3_LS019	chr1:150344261|150344434:+	PRPF3	pre-mRNA processing factor 3	protein coding gene	no	ENST00000324862.6	39.939	16.361	57.170	0.997(9548)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_OLA1P1_LS0001	chr22:42107866|42108581:-	OLA1P1	OLA1 pseudogene 1	pseudogene	no	.	1.019	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
RANBP1_LS003	chr22:20117664|20119013:+	RANBP1	RAN binding protein 1	protein coding gene	no	ENST00000402752.5;ENST00000488484.1;ENST00000331821.7;ENST00000411892.5;ENST00000467920.1	55.756	20.657	74.556	0.99(9486)	0.991(696)	0.979(17020)	non tumor-specific	nAS	yes
UN_CFAP20_LS0002	chr16:58114880|58115269:-	CFAP20	cilia and flagella associated protein 20	protein coding gene	no	.	9.417	2.727	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_APOL4_UP_LS0014	chr22:36228273|36261662:-	APOL4	apolipoprotein L4	protein coding gene	no	.	15.943	0.738	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
NLRP13_LS002	chr19:55896119|55898770:-	NLRP13	NLR family pyrin domain containing 13	protein coding gene	no	ENST00000588751.5;ENST00000342929.3	6.256	0.267	1.552	0.003(33)	0.009(6)	0.021(359)	non tumor-specific	nAS	yes
PTPN11_LS019	chr12:112504796|112505825:+	PTPN11	protein tyrosine phosphatase non-receptor type 11	protein coding gene	yes	ENST00000351677.6	64.789	48.808	56.885	0.978(9375)	0.98(688)	0.976(16972)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SYNPO2_LS0012	chr4:118948608|118955905:-	SYNPO2	synaptopodin 2	protein coding gene	yes	.	7.125	5.790	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TRABD2B_LS0037	chr1:47995341|47996688:-	TRABD2B	TraB domain containing 2B	protein coding gene	no	.	0.763	0.107	0.000	0.018(175)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
SCAPER_LS012	chr15:76504974|76567270:-	SCAPER	S-phase cyclin A associated protein in the ER	protein coding gene	no	ENST00000564757.5;ENST00000569784.1	0.114	0.106	0.727	0.09(863)	0.135(95)	0.194(3367)	non tumor-specific	exon_skip	yes
LINC00639_LS010	chr14:38839204|38941520:-	LINC00639	long intergenic non-protein coding RNA 639	lncRNA gene	no	ENST00000556116.1	0.099	0.082	1.068	0.019(181)	0.011(8)	0.066(1151)	non tumor-specific	nAS	yes
UN_ACTG1_LS0173	chr17:81510612|81512000:+	ACTG1	actin gamma 1	protein coding gene	no	.	25.059	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
FBXW11_LS023	chr5:171957698|171996890:-	FBXW11	F-box and WD repeat domain containing 11	protein coding gene	no	ENST00000520376.1	0.537	0.409	0.906	0.169(1622)	0.283(199)	0.247(4294)	non tumor-specific	exon_skip	yes
AC005090.1_LS001	chr7:31414882|31415371:-	AC005090.1	-	lncRNA gene	no	ENST00000433356.1	0.804	0.000	0.719	0.002(16)	0(0)	0.002(43)	non tumor-specific	nAS	yes
UN_OARD1_LS0005	chr6:41035135|41042598:-	OARD1	O-acyl-ADP-ribose deacylase 1	protein coding gene	no	.	1.230	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
MDN1_LS084	chr6:89749369|89749543:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	ENST00000369393.7;ENST00000629399.2;ENST00000439638.1	4.464	2.668	2.424	0.452(4334)	0.661(464)	0.819(14241)	non tumor-specific	nAS	yes
UN_B3GLCT_LS0026	chr13:31261082|31274509:+	B3GLCT	beta 3-glucosyltransferase	protein coding gene	no	.	1.421	0.371	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CLN8_LS0001	chr8:1755915|1755999:+	CLN8	CLN8 transmembrane ER and ERGIC protein	protein coding gene	no	.	1.596	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	intron_retention	no
DBNL_LS031	chr7:44058480|44058878:+	DBNL	drebrin like	protein coding gene	no	ENST00000468694.5	0.391	0.752	4.182	0.857(8209)	0.869(610)	0.946(16452)	non tumor-specific	alt_3prime;intron_retention	yes
GRIP1_LS042	chr12:66596927|66804053:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000541947.1	0.525	0.064	0.892	0.023(217)	0.013(9)	0.024(423)	non tumor-specific	exon_skip	yes
RHOT1_LS031	chr17:32209445|32211116:+	RHOT1	ras homolog family member T1	protein coding gene	no	ENST00000358365.7	6.844	3.901	2.804	0.883(8458)	0.93(653)	0.886(15402)	non tumor-specific	exon_skip	yes
ADCY2_LS011	chr5:7706902|7707706:+	ADCY2	adenylate cyclase 2	protein coding gene	no	ENST00000338316.8	11.536	6.641	5.702	0.338(3243)	0.406(285)	0.762(13251)	non tumor-specific	nAS	yes
UN_IGHVII-40-1_UP_LS0008	chr14:106443435|106470675:-	IGHVII-40-1	immunoglobulin heavy variable (II)-40-1 (pseudogene)	no	no	.	4.571	5.805	0.000	0.039(371)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_METRN_LS0013	chr16:715984|716352:+	METRN	meteorin, glial cell differentiation regulator	protein coding gene	no	.	2.731	0.000	0.000	0.006(58)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PIEZO2_LS052	chr18:10791324|10791463:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	ENST00000583325.1	0.139	0.000	0.767	0.003(32)	0.001(1)	0.004(64)	non tumor-specific	nAS	yes
UN_LINC00551_LS0002	chr13:106627134|106630787:+	LINC00551	long intergenic non-protein coding RNA 551	lncRNA gene	no	.	3.402	2.354	0.000	0.018(176)	0.264(185)	0(0)	non tumor-specific	nAS	no
NEK10_LS005	chr3:27131990|27141482:-	NEK10	NIMA related kinase 10	protein coding gene	no	ENST00000295720.10;ENST00000383771.8;ENST00000429845.6;ENST00000383770.4;ENST00000498182.5	1.937	1.432	1.777	0.144(1378)	0.377(265)	0.622(10819)	non tumor-specific	nAS	yes
UN_AC004908.1_UP_LS0014	chr8:292316|296222:-	AC004908.1	-	lncRNA gene	no	.	2.688	0.354	0.000	0.024(227)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP35_LS0047	chr19:46997758|46999304:+	ARHGAP35	Rho GTPase activating protein 35	protein coding gene	no	.	0.418	0.149	0.000	0.037(353)	0.031(22)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PPP2R2A_LS0001	chr8:26291653|26291752:+	PPP2R2A	protein phosphatase 2 regulatory subunit Balpha	protein coding gene	no	.	0.734	0.731	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
UN_HSPH1_LS0014	chr13:31140309|31140441:-	HSPH1	heat shock protein family H (Hsp110) member 1	protein coding gene	no	.	3.161	0.436	0.000	0.017(162)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ACAP3_LS037	chr1:1304143|1307072:-	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein coding gene	no	ENST00000438966.1	0.300	0.326	1.265	0.073(702)	0.115(81)	0.315(5474)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SLC11A1_LS0010	chr2:218390279|218391198:+	SLC11A1	solute carrier family 11 member 1	protein coding gene	no	.	1.537	1.082	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AGAP9_LS0007	chr10:47507583|47508485:-	AGAP9	ArfGAP with GTPase domain, ankyrin repeat and PH domain 9	protein coding gene	no	.	6.526	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AP3D1_LS015	chr19:2112931|2113336:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	ENST00000644728.1	19.975	11.823	0.000	0.906(8685)	0.943(662)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GLMP_LS025	chr1:156294236|156294365:-	GLMP	glycosylated lysosomal membrane protein	protein coding gene	no	ENST00000647767.1;ENST00000612353.4;ENST00000614643.4;ENST00000622703.4;ENST00000362007.5;ENST00000476177.6;ENST00000497955.1;ENST00000368264.1;ENST00000479084.1;ENST00000484214.1	121.584	56.481	43.846	0.998(9564)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RALGPS2_LS0030	chr1:178885211|178886025:+	RALGPS2	Ral GEF with PH domain and SH3 binding motif 2	protein coding gene	no	.	1.512	0.246	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MIA3_LS012	chr1:222649791|222650292:+	MIA3	MIA SH3 domain ER export factor 3	protein coding gene	no	ENST00000467190.1	0.262	0.067	0.977	0.638(6109)	0.632(444)	0.521(9049)	non tumor-specific	exon_skip	yes
UN_SLC39A3_LS0025	chr19:2732966|2733129:+	SLC39A3	solute carrier family 39 member 3	protein coding gene	no	.	1.874	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AXIN1_LS0047	chr16:314683|317144:-	AXIN1	axin 1	protein coding gene	yes	.	0.917	0.121	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_DNAJA1P3_UP_LS0001	chrX:107363753|107364596:-	DNAJA1P3	DnaJ heat shock protein family (Hsp40) member A1 pseudogene 3	pseudogene	no	.	3.090	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
WASF3_LS004	chr13:26642403|26665028:+	WASF3	WASP family member 3	protein coding gene	no	ENST00000361042.8;ENST00000335327.5;ENST00000496788.1	10.253	13.254	11.861	0.636(6090)	0.916(643)	0.923(16043)	non tumor-specific	exon_skip	yes
UN_RUSC2_LS0031	chr9:35560422|35560960:+	RUSC2	RUN and SH3 domain containing 2	protein coding gene	no	.	2.260	0.834	0.000	0.007(66)	0.016(11)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
AC092162.2_LS005	chr2:176761698|176762500:-	AC092162.2	-	lncRNA gene	no	ENST00000430460.1	0.119	0.103	0.804	0.052(501)	0.057(40)	0.05(862)	non tumor-specific	nAS	yes
IQGAP2_LS014	chr5:76606303|76611020:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000274364.10;ENST00000514350.5;ENST00000505766.5;ENST00000379730.7	21.097	24.030	5.181	0.688(6588)	0.903(634)	0.762(13249)	non tumor-specific	exon_skip	yes
OGFOD3_LS025	chr17:82409410|82415406:-	OGFOD3	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein coding gene	no	.;.	3.427	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_DNAH5_UP_LS0024	chr5:14626109|14652143:-	DNAH5	dynein axonemal heavy chain 5	protein coding gene	no	.	3.681	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MTRR_LS0019	chr5:7890992|7891015:-	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein coding gene	no	.	6.330	0.559	0.000	0.007(65)	0.004(3)	0(0)	non tumor-specific	nAS	no
DNAH5_LS014	chr5:13737495|13751078:-	DNAH5	dynein axonemal heavy chain 5	protein coding gene	no	ENST00000265104.4	3.874	2.859	1.227	0.236(2260)	0.419(294)	0.275(4777)	non tumor-specific	exon_skip	yes
FCMR_LS012	chr1:206913042|206921818:-	FCMR	Fc fragment of IgM receptor	protein coding gene	no	ENST00000442471.4	0.118	0.173	1.343	0.393(3768)	0.45(316)	0.22(3821)	non tumor-specific	exon_skip	yes
OR7E11P_LS003	chr11:67751818|67756612:-	OR7E11P	olfactory receptor family 7 subfamily E member 11 pseudogene	lncRNA gene	no	ENST00000642027.2	0.691	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_MAP4_LS0152	chr3:47928350|47940499:-	MAP4	microtubule associated protein 4	protein coding gene	no	.	3.950	1.982	0.000	0.012(119)	0.027(19)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ATP2C1_LS028	chr3:130967240|130967330:+	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	ENST00000505330.5;ENST00000504381.5;ENST00000507488.6;ENST00000510168.5;ENST00000508532.5;ENST00000533801.6;ENST00000504948.5;ENST00000513801.5;ENST00000328560.12;ENST00000428331.6;ENST00000359644.7;ENST00000422190.6;ENST00000504612.5;ENST00000514654.5;ENST00000504571.5	86.745	56.955	54.244	0.988(9469)	0.991(696)	0.979(17018)	non tumor-specific	exon_skip	yes
HNRNPA2B1_LS026	chr7:26197730|26200572:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	.;.	99.467	6.675	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DMC1_LS018	chr22:38569390|38570043:-	DMC1	HID1 domain containing	protein coding gene	no	ENST00000464842.1	1.307	0.586	0.908	0.511(4892)	0.511(359)	0.467(8122)	non tumor-specific	alt_5prime;exon_skip	yes
SUN1_LS063	chr7:892418|893740:+	SUN1	Sad1 and UNC84 domain containing 1	protein coding gene	no	ENST00000457861.1	158.229	79.908	67.324	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_RPSAP68_UP_LS0738	chr21:8401699|8445861:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	379.626	82.273	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
COL11A2_LS061	chr6:33180332|33180668:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	ENST00000374708.8;ENST00000341947.6;ENST00000361917.5;ENST00000457788.5	3.350	0.343	1.656	0.146(1395)	0.074(52)	0.675(11725)	non tumor-specific	nAS	yes
UN_PCBD2_LS0064	chr5:134924818|134927566:+	PCBD2	pterin-4 alpha-carbinolamine dehydratase 2	protein coding gene	no	.	6.850	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
EIF5B_LS023	chr2:99390705|99392967:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	ENST00000289371.10;ENST00000617677.1	107.845	62.150	81.679	0.991(9497)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SFI1_LS030	chr22:31589577|31602212:+	SFI1	SFI1 centrin binding protein	protein coding gene	no	ENST00000540643.5;ENST00000432498.5;ENST00000443011.5;ENST00000400289.5;ENST00000400288.6;ENST00000382162.7;ENST00000524296.5;ENST00000452250.5;ENST00000417682.6	12.558	6.508	13.841	0.92(8819)	0.923(648)	0.975(16942)	non tumor-specific	exon_skip;mutex_exons	yes
IDH2_LS009	chr15:90088502|90091553:-	IDH2	isocitrate dehydrogenase (NADP(+)) 2	protein coding gene	no	ENST00000559482.5	0.383	0.348	0.597	0.326(3127)	0.289(203)	0.032(553)	non tumor-specific	exon_skip;mutex_exons	yes
PADI4_LS012	chr1:17348785|17354533:+	PADI4	peptidyl arginine deiminase 4	protein coding gene	no	ENST00000467001.1	0.200	0.097	1.512	0.036(346)	0.066(46)	0.306(5323)	non tumor-specific	nAS	yes
UN_EIF4B_LS0034	chr12:53038961|53039238:+	EIF4B	eukaryotic translation initiation factor 4B	protein coding gene	no	.	6.930	1.138	0.000	0.008(78)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_OGFRP1_UP_LS0011	chr22:42128206|42141901:+	OGFRP1	opioid growth factor receptor pseudogene 1	lncRNA gene	no	.	5.656	3.973	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
CDC42BPG_LS013	chr11:64827783|64829471:-	CDC42BPG	CDC42 binding protein kinase gamma	protein coding gene	no	ENST00000342711.5;ENST00000342711.5;ENST00000342711.5	14.940	12.747	7.326	0.79(7573)	0.858(602)	0.626(10882)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRAPPC8_LS021	chr18:31874704|31890735:-	TRAPPC8	trafficking protein particle complex 8	protein coding gene	no	ENST00000283351.8;ENST00000580104.5;ENST00000582539.5;ENST00000577474.2;ENST00000582513.5	9.860	9.099	13.711	0.931(8921)	0.972(682)	0.974(16926)	non tumor-specific	exon_skip	yes
UN_MSMB_UP_LS0027	chr10:46219744|46234718:-	MSMB	microseminoprotein beta	protein coding gene	yes	.	3.478	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
LINC02003_LS003	chr17:72354227|72354905:+	LINC02003	long intergenic non-protein coding RNA 2003	lncRNA gene	no	ENST00000577573.1	0.630	0.000	0.917	0.002(16)	0(0)	0.012(200)	non tumor-specific	nAS	yes
UN_PWWP2A_LS0023	chr5:160105676|160108545:-	PWWP2A	PWWP domain containing 2A	protein coding gene	no	.	0.689	0.311	0.000	0.023(219)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
UN_SERPINA12_UP_LS0001	chr14:94533640|94560539:-	SERPINA12	serpin family A member 12	protein coding gene	no	.	2.143	0.512	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AKR1B15_LS0030	chr7:134567983|134568158:+	AKR1B15	aldo-keto reductase family 1 member B15	protein coding gene	no	.	1.581	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
IL13RA2_LS006	chrX:115013889|115014421:-	IL13RA2	interleukin 13 receptor subunit alpha 2	protein coding gene	no	ENST00000371936.5;ENST00000243213.1	13.571	3.177	1.748	0.395(3783)	0.501(352)	0.498(8655)	non tumor-specific	alt_3prime	yes
HOOK2_LS014	chr19:12765958|12772190:-	HOOK2	hook microtubule tethering protein 2	protein coding gene	no	ENST00000586188.5	0.345	0.145	0.792	0.257(2461)	0.195(137)	0.294(5102)	non tumor-specific	nAS	yes
UN_LINC00605_UP_LS0020	chr14:103227153|103232466:-	LINC00605	long intergenic non-protein coding RNA 605	lncRNA gene	no	.	1.026	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01885_UP_LS0019	chr2:107678651|107748115:-	LINC01885	long intergenic non-protein coding RNA 1885	lncRNA gene	no	.	3.173	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
TCOF1_LS023	chr5:150379732|150383738:+	TCOF1	treacle ribosome biogenesis factor 1	protein coding gene	no	ENST00000394269.7	1.691	0.904	1.788	0.571(5475)	0.575(404)	0.82(14261)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
FRMD4A_LS028	chr10:13737930|13740194:-	FRMD4A	FERM domain containing 4A	protein coding gene	no	ENST00000357447.6;ENST00000264546.10;ENST00000342409.3	5.419	4.662	7.028	0.612(5867)	0.795(558)	0.904(15708)	non tumor-specific	nAS	yes
CAV1_LS003	chr7:116525092|116526525:+	CAV1	caveolin 1	protein coding gene	yes	ENST00000341049.6;ENST00000489856.1;ENST00000341049.6;ENST00000489856.1	10.438	19.223	76.339	0.968(9278)	0.994(698)	0.954(16578)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF286A_LS002	chr17:15699777|15700135:+	ZNF286A	zinc finger protein 286A	protein coding gene	no	ENST00000585207.5;ENST00000580259.5;ENST00000583566.5;ENST00000579516.5;ENST00000585194.5;ENST00000583031.5	0.504	0.370	0.831	0.831(7962)	0.852(598)	0.361(6268)	non tumor-specific	alt_3prime;intron_retention	yes
AL807742.1_LS008	chrX:21300945|21374097:-	AL807742.1	-	lncRNA gene	no	ENST00000636450.1	0.561	0.000	0.757	0(1)	0(0)	0.015(266)	non tumor-specific	nAS	yes
UN_MAPK8IP2_LS0009	chr22:50603719|50603838:+	MAPK8IP2	mitogen-activated protein kinase 8 interacting protein 2	protein coding gene	no	.	1.807	0.085	0.000	0.058(552)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_SLC30A10_LS0040	chr1:219927105|219928579:-	SLC30A10	solute carrier family 30 member 10	protein coding gene	no	.	0.661	0.252	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_SYK_LS0027	chr9:90895612|90895685:-	SYK	spleen associated tyrosine kinase	protein coding gene	yes	.	3.187	0.986	0.000	0.016(155)	0.009(6)	0(0)	non tumor-specific	nAS	no
DDX3Y_LS005	chrY:12907594|12909360:+	DDX3Y	DEAD-box helicase 3 Y-linked	protein coding gene	no	ENST00000360160.8;ENST00000454054.5;ENST00000336079.7;ENST00000493363.1;ENST00000440554.1	20.587	25.682	34.662	0.469(4496)	0.49(344)	0.692(12033)	non tumor-specific	alt_3prime;exon_skip	yes
TTN_LS111	chr2:178618081|178618189:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5	8.049	9.929	1.287	0.002(23)	0.014(10)	0.229(3979)	non tumor-specific	intron_retention	yes
PTPN7_LS009	chr1:202153810|202158118:-	PTPN7	protein tyrosine phosphatase non-receptor type 7	protein coding gene	no	ENST00000462815.5;ENST00000629151.2	0.392	0.300	0.715	0.178(1710)	0.118(83)	0.039(683)	non tumor-specific	nAS	yes
UN_PANX1_LS0009	chr11:94131167|94153491:+	PANX1	pannexin 1	protein coding gene	no	.	0.530	0.211	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
CSMD1_LS041	chr8:3181214|3182991:-	CSMD1	CUB and Sushi multiple domains 1	protein coding gene	yes	ENST00000520451.1	0.988	0.010	0.707	0.072(693)	0.003(2)	0.008(131)	non tumor-specific	nAS	yes
MGC27382_LS004	chr1:78251877|78292480:+	MGC27382	-	lncRNA gene	no	ENST00000436742.5	0.746	0.933	0.712	0.003(29)	0.084(59)	0.044(757)	non tumor-specific	nAS	yes
UN_LINC00331_UP_LS0015	chr13:79010023|79023228:-	LINC00331	long intergenic non-protein coding RNA 331	lncRNA gene	no	.	3.585	0.109	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COL1A1_LS0775	chr17:50194626|50194723:-	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	4871.305	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC018467.1_LS0007	chr2:23019046|23025821:-	AC018467.1	-	lncRNA gene	no	.	1.060	1.768	0.000	0.003(26)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_FAM98B_LS0003	chr15:38454232|38465269:+	FAM98B	family with sequence similarity 98 member B	protein coding gene	no	.	1.275	0.482	0.000	0.014(135)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PPP6R1_LS0105	chr19:55258568|55258596:+	PPP6R1	protein phosphatase 6 regulatory subunit 1	protein coding gene	no	.	2.250	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TAPBP_LS0212	chr6:33305075|33305223:-	TAPBP	TAP binding protein	protein coding gene	no	.	6.409	0.405	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_CYP1B1-AS1_LS0038	chr2:38202689|38203263:-	CYP1B1-AS1	CYP1B1 antisense RNA 1	lncRNA gene	no	.	1.723	0.349	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
BTN3A1_LS013	chr6:26406256|26407827:+	BTN3A1	butyrophilin subfamily 3 member A1	protein coding gene	no	ENST00000414912.2	2.293	1.496	1.340	0.894(8566)	0.95(667)	0.664(11534)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_XYLB_LS0023	chr3:38377366|38379246:+	XYLB	xylulokinase	protein coding gene	no	.	0.938	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC6_LS025	chr8:132661627|132675274:-	LRRC6	leucine rich repeat containing 6	protein coding gene	no	ENST00000521430.5	0.165	0.073	0.782	0.258(2471)	0.325(228)	0.166(2886)	non tumor-specific	alt_5prime	yes
UN_QTRT1_LS0017	chr19:10712649|10712758:+	QTRT1	queuine tRNA-ribosyltransferase catalytic subunit 1	protein coding gene	no	.	17.487	0.022	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ATP2B4_UP_LS0006	chr1:203513726|203529966:+	ATP2B4	ATPase plasma membrane Ca2+ transporting 4	protein coding gene	no	.	2.482	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
OGFOD2_LS039	chr12:122978091|122978360:+	OGFOD2	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein coding gene	no	ENST00000538755.5	0.148	0.062	1.470	0.086(822)	0.081(57)	0.749(13025)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RRP12_LS010	chr10:97369582|97370167:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000479481.5;ENST00000536831.5;ENST00000315563.10;ENST00000370992.8;ENST00000414986.5	47.765	18.368	18.150	0.99(9484)	0.994(698)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NASP_LS0020	chr1:45617591|45618043:+	NASP	nuclear autoantigenic sperm protein	protein coding gene	no	.	16.599	0.237	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_VIM_LS0011	chr10:17229350|17229412:-	VIM	vimentin	protein coding gene	yes	.	25.368	0.153	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL008707.1_UP_LS0006	chrX:125208217|125213131:-	AL008707.1	-	pseudogene	no	.	3.971	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
TRRAP_LS028	chr7:98930830|98931405:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1	7.276	3.743	5.169	0.817(7825)	0.889(624)	0.933(16219)	non tumor-specific	nAS	yes
UN_LINC00639_LS0003	chr14:38761253|38762102:-	LINC00639	long intergenic non-protein coding RNA 639	lncRNA gene	no	.	2.855	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC106047.1_LS001	chr4:26860028|26860138:-	AC106047.1	-	lncRNA gene	no	ENST00000472346.1	0.466	0.204	0.713	0.14(1338)	0.117(82)	0.088(1534)	non tumor-specific	nAS	yes
PRKAG1_LS014	chr12:49005364|49005462:-	PRKAG1	protein kinase AMP-activated non-catalytic subunit gamma 1	protein coding gene	no	ENST00000547306.5;ENST00000548065.6;ENST00000546531.5;ENST00000552212.5;ENST00000551770.5;ENST00000551696.5;ENST00000552793.5;ENST00000548950.5;ENST00000549726.5;ENST00000551121.5;ENST00000550448.5;ENST00000552463.5;ENST00000548857.5;ENST00000548605.5;ENST00000547082.1	44.337	29.975	68.393	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ACSL6_LS002	chr5:131959607|131960520:-	ACSL6	acyl-CoA synthetase long chain family member 6	protein coding gene	no	ENST00000379264.6;ENST00000357096.5;ENST00000379255.5;ENST00000296869.8;ENST00000493861.5;ENST00000379246.5;ENST00000379244.5;ENST00000379240.5;ENST00000543479.5;ENST00000431707.5;ENST00000492156.1	7.945	5.689	2.675	0.596(5710)	0.712(500)	0.731(12701)	non tumor-specific	nAS	yes
UN_TPMT_LS0018	chr6:18149171|18150275:-	TPMT	thiopurine S-methyltransferase	protein coding gene	no	.	4.144	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_RPS7P10_UP_LS0004	chr13:21650276|21651304:-	RPS7P10	ribosomal protein S7 pseudogene 10	pseudogene	no	.	2.373	0.379	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDKN2A_LS012	chr9:21971208|21974404:-	CDKN2A	cyclin dependent kinase inhibitor 2A	protein coding gene	yes	ENST00000380151.3	0.090	0.012	0.595	0.108(1035)	0.014(10)	0.005(83)	non tumor-specific	alt_5prime	yes
SLC44A3_LS032	chr1:94892517|94894818:+	SLC44A3	solute carrier family 44 member 3	protein coding gene	no	ENST00000446120.6;ENST00000271227.10;ENST00000527077.5;ENST00000529450.5;ENST00000467909.5;ENST00000532427.5;ENST00000475883.5;ENST00000446120.6;ENST00000271227.10;ENST00000527077.5;ENST00000529450.5;ENST00000467909.5;ENST00000532427.5;ENST00000475883.5	34.619	28.728	12.041	0.948(9080)	0.977(686)	0.9(15646)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SLC29A4_UP_LS0002	chr7:5182322|5229111:+	SLC29A4	solute carrier family 29 member 4	protein coding gene	no	.	8.601	5.090	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HIP1_LS0022	chr7:75538224|75541919:-	HIP1	huntingtin interacting protein 1	protein coding gene	no	.	1.356	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
NCOA7_LS004	chr6:125791067|125815291:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	ENST00000392477.6;ENST00000417494.5;ENST00000229634.13	2.392	2.596	3.786	0.73(6995)	0.887(623)	0.88(15301)	non tumor-specific	alt_5prime;exon_skip	yes
AC024587.2_LS001	chr5:107700192|107702183:-	AC024587.2	-	lncRNA gene	no	ENST00000509458.5;ENST00000502287.1	3.754	0.000	0.762	0.002(15)	0(0)	0.029(505)	non tumor-specific	nAS	yes
UN_IFITM2_LS0087	chr11:309056|314045:-	IFITM2	interferon induced transmembrane protein 2	protein coding gene	no	.	2.561	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MYO7B_LS0037	chr2:127625501|127626975:+	MYO7B	myosin VIIB	protein coding gene	no	.	2.339	0.417	0.000	0.007(70)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_SEC61G_UP_LS0002	chr7:54806924|54811833:-	SEC61G	SEC61 translocon subunit gamma	protein coding gene	no	.	8.471	0.295	0.000	0.078(747)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_CNIH3_LS0007	chr1:224434862|224459197:+	CNIH3	cornichon family AMPA receptor auxiliary protein 3	protein coding gene	no	.	3.174	0.182	0.000	0.015(144)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LIPI_LS002	chr21:14144799|14152573:-	LIPI	lipase I	protein coding gene	no	ENST00000344577.6;ENST00000536861.5;ENST00000614229.4	24.227	1.055	1.914	0.01(95)	0.075(53)	0.038(662)	non tumor-specific	nAS	yes
UN_HLA-DRB9_UP_LS0081	chr6:32519620|32554733:-	HLA-DRB9	major histocompatibility complex, class II, DR beta 9 (pseudogene)	pseudogene	no	.	370.466	112.283	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
DTNB_LS030	chr2:25577004|25580721:-	DTNB	dystrobrevin beta	protein coding gene	no	ENST00000496972.6;ENST00000398951.6;ENST00000406818.7;ENST00000404103.7;ENST00000407661.7;ENST00000407038.7;ENST00000405222.5;ENST00000288642.12;ENST00000407186.5;ENST00000356599.9;ENST00000485845.5;ENST00000493538.5;ENST00000493386.5;ENST00000472690.5;ENST00000474987.5	23.196	15.399	11.632	0.991(9491)	0.993(697)	0.978(16994)	non tumor-specific	exon_skip	yes
UN_REST_LS0003	chr4:56909216|56910630:+	REST	RE1 silencing transcription factor	protein coding gene	no	.	2.031	0.134	0.000	0.006(53)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
STOML1_LS019	chr15:73990945|73992091:-	STOML1	stomatin like 1	protein coding gene	no	ENST00000316900.9;ENST00000562453.1	0.062	0.146	0.656	0.141(1350)	0.124(87)	0.112(1942)	non tumor-specific	exon_skip	yes
UN_ALG8_LS0007	chr11:78104453|78109442:-	ALG8	ALG8 alpha-1,3-glucosyltransferase	protein coding gene	no	.	12.813	0.572	0.000	0.012(116)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
YPEL1_LS006	chr22:21704125|21710487:-	YPEL1	yippee like 1	protein coding gene	no	ENST00000477675.1	0.387	0.095	0.734	0.083(795)	0.104(73)	0.148(2572)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_APBA3_LS0012	chr19:3752990|3753381:-	APBA3	amyloid beta precursor protein binding family A member 3	protein coding gene	no	.	1.742	0.317	0.000	0.013(122)	0.009(6)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_NCKIPSD_LS0034	chr3:48683012|48684704:-	NCKIPSD	NCK interacting protein with SH3 domain	protein coding gene	no	.	1.019	0.346	0.000	0.031(301)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_AC055854.1_UP_LS0003	chr8:22604156|22605736:+	AC055854.1	-	lncRNA gene	no	.	3.350	0.709	0.000	0.004(43)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_DHRS9_LS0003	chr2:169069717|169074255:+	DHRS9	dehydrogenase/reductase 9	protein coding gene	no	.	2.646	0.514	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
HADHB_LS003	chr2:26245139|26254247:+	HADHB	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein coding gene	no	ENST00000425035.5	0.047	0.273	1.128	0.877(8403)	0.876(615)	0.304(5288)	non tumor-specific	alt_5prime	yes
CYP2C9_LS010	chr10:94981370|94986033:+	CYP2C9	cytochrome P450 family 2 subfamily C member 9	protein coding gene	no	ENST00000260682.7;ENST00000643112.1	27.479	161.373	1.980	0.185(1769)	0.279(196)	0.3(5207)	non tumor-specific	exon_skip	yes
UN_KCNH8_LS0024	chr3:19450274|19451155:+	KCNH8	potassium voltage-gated channel subfamily H member 8	protein coding gene	no	.	1.802	0.242	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NPIPP1_LS009	chr16:15119054|15121844:-	NPIPP1	nuclear pore complex interacting protein pseudogene 1	pseudogene	no	ENST00000534799.6	0.105	0.062	1.365	0.791(7582)	0.771(541)	0.582(10111)	non tumor-specific	nAS	yes
UN_EFCAB6_LS0008	chr22:43540543|43554869:-	EFCAB6	EF-hand calcium binding domain 6	protein coding gene	no	.	1.970	0.700	0.000	0.006(53)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
MMRN1_LS004	chr4:89909395|89911944:+	MMRN1	multimerin 1	protein coding gene	no	ENST00000394980.5;ENST00000264790.6;ENST00000508372.1	4.802	6.379	4.469	0.391(3748)	0.84(590)	0.683(11869)	non tumor-specific	exon_skip	yes
UN_EIF5AL1_LS0023	chr10:79513114|79513294:-	EIF5AL1	eukaryotic translation initiation factor 5A like 1	protein coding gene	no	.	1.993	0.145	0.000	0.02(189)	0.009(6)	0(0)	non tumor-specific	nAS	no
INTS11_LS070	chr1:1321984|1324581:-	INTS11	integrator complex subunit 11	protein coding gene	no	ENST00000527719.5	0.027	0.083	0.694	0.18(1721)	0.199(140)	0.169(2932)	non tumor-specific	nAS	yes
UN_IQCG_LS0063	chr3:197943631|197943778:-	IQCG	IQ motif containing G	protein coding gene	no	.	3.051	0.155	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
F13A1_LS009	chr6:6222171|6224686:-	F13A1	coagulation factor XIII A chain	protein coding gene	no	ENST00000264870.7;ENST00000445223.1	12.855	13.303	16.013	0.772(7401)	0.902(633)	0.9(15637)	non tumor-specific	nAS	yes
UN_MYD88_LS0052	chr3:38141900|38142149:-	MYD88	MYD88 innate immune signal transduction adaptor	protein coding gene	yes	.	4.231	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SUGP2_LS0047	chr19:19019229|19019887:-	SUGP2	SURP and G-patch domain containing 2	protein coding gene	no	.	1.253	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZNF470_LS009	chr19:56574733|56588226:+	ZNF470	zinc finger protein 470	protein coding gene	no	ENST00000601902.5	0.875	0.352	1.358	0.452(4329)	0.509(357)	0.553(9609)	non tumor-specific	exon_skip	yes
UN_AC087276.2_LS0001	chr11:43335332|43352021:-	AC087276.2	-	lncRNA gene	no	.	2.249	0.846	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ITGB2_LS0028	chr21:44888879|44889325:+	ITGB2	integrin subunit beta 2	protein coding gene	no	.	3.613	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGEF15_LS006	chr17:8313555|8314906:+	ARHGEF15	Rho guanine nucleotide exchange factor 15	protein coding gene	no	ENST00000361926.7;ENST00000421050.2;ENST00000647883.1	3.930	6.064	4.586	0.64(6133)	0.852(598)	0.811(14089)	non tumor-specific	exon_skip	yes
UN_ST8SIA4_UP_LS0008	chr5:101094905|101100348:-	ST8SIA4	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein coding gene	no	.	3.144	0.440	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC131254.1_LS0009	chr8:29821914|29834284:-	AC131254.1	-	lncRNA gene	no	.	3.475	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
ZBTB17_LS024	chr1:15947123|15973039:-	ZBTB17	zinc finger and BTB domain containing 17	protein coding gene	no	ENST00000537142.5	0.145	0.138	0.983	0.463(4435)	0.405(284)	0.568(9871)	non tumor-specific	exon_skip	yes
GRK3_LS004	chr22:25604453|25661576:+	GRK3	G protein-coupled receptor kinase 3	protein coding gene	no	ENST00000455558.2	1.578	0.827	0.983	0.036(346)	0.05(35)	0.378(6570)	non tumor-specific	exon_skip	yes
HIC2_LS002	chr22:21420757|21442759:+	HIC2	HIC ZBTB transcriptional repressor 2	protein coding gene	no	ENST00000407598.2	0.261	0.084	0.716	0.145(1386)	0.083(58)	0.05(873)	non tumor-specific	exon_skip	yes
ADAMTS18_LS019	chr16:77362264|77363802:-	ADAMTS18	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein coding gene	yes	ENST00000282849.9	3.306	1.788	1.545	0.046(445)	0.081(57)	0.188(3265)	non tumor-specific	exon_skip	yes
UN_RNU6-1306P_UP_LS0003	chr11:63916561|63918159:-	RNU6-1306P	RNA, U6 small nuclear 1306, pseudogene	small non-coding RNA gene	no	.	1.762	0.066	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_EPN3_LS0026	chr17:50541333|50541450:+	EPN3	epsin 3	protein coding gene	no	.	17.357	4.008	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
SPTBN1_LS037	chr2:54658046|54659154:+	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	ENST00000356805.8;ENST00000615901.4;ENST00000333896.5;ENST00000496323.1;ENST00000356805.8;ENST00000615901.4;ENST00000333896.5;ENST00000496323.1	317.829	321.347	309.189	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
KMT2D_LS053	chr12:49050790|49050886:-	KMT2D	lysine methyltransferase 2D	protein coding gene	no	ENST00000301067.11	4.551	2.473	6.961	0.694(6654)	0.808(567)	0.946(16447)	non tumor-specific	nAS	yes
UN_MCM10_UP_LS0005	chr10:13136897|13158398:+	MCM10	minichromosome maintenance 10 replication initiation factor	protein coding gene	no	.	2.404	1.189	0.000	0.111(1064)	0.068(48)	0(0)	non tumor-specific	nAS	no
UN_TMEM92_LS0004	chr17:50274570|50274889:+	TMEM92	transmembrane protein 92	protein coding gene	no	.	1.947	3.357	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
AL031847.2_LS002	chr1:6181486|6192930:-	AL031847.2	-	protein coding gene	no	ENST00000484532.6	0.024	0.036	0.787	0.849(8136)	0.842(591)	0.407(7075)	non tumor-specific	alt_5prime	yes
ZNF566_LS011	chr19:36476616|36489474:-	ZNF566	zinc finger protein 566	protein coding gene	no	ENST00000392170.6;ENST00000424129.6;ENST00000472909.6;ENST00000480361.1	0.442	0.274	0.982	0.606(5802)	0.687(482)	0.534(9279)	non tumor-specific	alt_5prime;exon_skip	yes
BRD8_LS017	chr5:138159599|138160069:-	BRD8	bromodomain containing 8	protein coding gene	no	ENST00000254900.9;ENST00000472478.6;ENST00000230901.9;ENST00000402931.5;ENST00000512140.5;ENST00000460746.1	49.182	24.187	54.960	0.996(9546)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TNS1_LS0112	chr2:217803361|217803394:+	TNS1	tensin 1	protein coding gene	no	.	8.334	0.574	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC7A6_LS004	chr16:68266721|68273818:+	SLC7A6	solute carrier family 7 member 6	protein coding gene	no	ENST00000648130.1;ENST00000566834.5;ENST00000566454.5;ENST00000568088.5	1.551	1.110	3.376	0.69(6614)	0.755(530)	0.838(14567)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MID1IP1_LS0049	chrX:38805603|38805732:-	MID1IP1	MID1 interacting protein 1	protein coding gene	no	.	1.912	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FOSL2_LS0111	chr2:28413287|28413416:-	FOSL2	FOS like 2, AP-1 transcription factor subunit	protein coding gene	no	.	2.931	0.130	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
MEG8_LS035	chr14:100961244|100965680:+	MEG8	maternally expressed 8, small nucleolar RNA host gene	lncRNA gene	no	ENST00000423708.3	0.018	0.047	0.734	0.028(265)	0.016(11)	0.004(70)	non tumor-specific	nAS	yes
UN_AC018638.4_UP_LS0016	chr7:128629458|128638774:+	AC018638.4	-	pseudogene	no	.	2.872	1.620	0.000	0.4(3831)	0.423(297)	0(0)	non tumor-specific	nAS	no
UN_HSPA8_LS0032	chr11:123058097|123058930:+	HSPA8	heat shock protein family A (Hsp70) member 8	protein coding gene	no	.	2.044	0.166	0.000	0.044(420)	0.016(11)	0(0)	non tumor-specific	nAS	no
RRP12_LS018	chr10:97372803|97373046:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000479481.5;ENST00000536831.5;ENST00000315563.10;ENST00000370992.8;ENST00000414986.5	33.113	12.958	13.214	0.986(9451)	0.99(695)	0.977(16977)	non tumor-specific	exon_skip	yes
HSD17B7P2_LS006	chr10:38365629|38369953:+	HSD17B7P2	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	pseudogene	no	ENST00000494540.5	6.785	2.903	10.622	0.648(6209)	0.615(432)	0.945(16422)	non tumor-specific	nAS	yes
SND1_LS001	chr7:127652451|127686613:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	ENST00000354725.7;ENST00000463020.1	74.719	41.106	41.333	0.944(9049)	0.932(654)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC007192.1_LS0091	chr19:18169476|18169507:-	AC007192.1	-	protein coding gene	no	.	4.441	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ANKLE2_LS0031	chr12:132736349|132736893:-	ANKLE2	ankyrin repeat and LEM domain containing 2	protein coding gene	no	.	2.009	1.140	0.000	0.016(154)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
CNTROB_LS027	chr17:7945986|7947571:+	CNTROB	centrobin, centriole duplication and spindle assembly protein	protein coding gene	no	ENST00000380262.7;ENST00000563694.5;ENST00000565740.5;ENST00000571632.5;ENST00000576922.5;ENST00000576723.5;ENST00000573862.1;ENST00000380262.7;ENST00000563694.5;ENST00000565740.5;ENST00000571632.5;ENST00000576922.5;ENST00000576723.5;ENST00000573862.1	29.466	16.133	33.148	0.995(9536)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
SMTN_LS037	chr22:31095609|31096733:+	SMTN	smoothelin	protein coding gene	no	ENST00000358743.5;ENST00000347557.6;ENST00000333137.11;ENST00000489337.5;ENST00000619644.4;ENST00000612341.4;ENST00000624247.1;ENST00000358743.5;ENST00000347557.6;ENST00000333137.11;ENST00000489337.5;ENST00000619644.4;ENST00000612341.4;ENST00000624247.1	47.118	208.425	84.639	0.991(9498)	0.997(700)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_EIF4G2_LS0054	chr11:10802368|10803506:+	EIF4G2	eukaryotic translation initiation factor 4 gamma 2	protein coding gene	no	.	4.241	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF620_LS0024	chr3:40489287|40489372:+	ZNF620	zinc finger protein 620	protein coding gene	no	.	1.757	0.230	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
ALLC_LS011	chr2:3697456|3701512:+	ALLC	allantoicase	protein coding gene	no	ENST00000252505.3;ENST00000476389.5;ENST00000471711.1	2.229	0.276	1.284	0.035(336)	0.048(34)	0.316(5498)	non tumor-specific	exon_skip	yes
TBC1D15_LS014	chr12:71872168|71872929:+	TBC1D15	TBC1 domain family member 15	protein coding gene	yes	ENST00000482439.6;ENST00000550746.5;ENST00000498482.5;ENST00000474468.5;ENST00000549402.5;ENST00000472611.6;ENST00000491063.5;ENST00000319106.12;ENST00000462788.6;ENST00000485960.6;ENST00000468049.2;ENST00000546932.5;ENST00000460818.1	22.277	18.461	22.953	0.967(9268)	0.989(694)	0.978(16994)	non tumor-specific	exon_skip	yes
ATG7_LS020	chr3:11309061|11313304:+	ATG7	autophagy related 7	protein coding gene	no	ENST00000451513.5;ENST00000418682.5;ENST00000354956.9;ENST00000354449.7;ENST00000488924.5;ENST00000464282.1;ENST00000424071.5	12.871	9.091	14.402	0.97(9297)	0.99(695)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_ZG16_LS0001	chr16:29778306|29778616:+	ZG16	zymogen granule protein 16	protein coding gene	no	.	2.603	3.992	0.000	0.001(11)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_POLR3A_LS0012	chr10:77993367|77996679:-	POLR3A	RNA polymerase III subunit A	protein coding gene	no	.	1.679	0.090	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MCM3AP_LS0073	chr21:46267142|46267631:-	MCM3AP	minichromosome maintenance complex component 3 associated protein	protein coding gene	no	.	2.462	0.166	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
NR2C1_LS005	chr12:95028509|95031349:-	NR2C1	nuclear receptor subfamily 2 group C member 1	protein coding gene	no	ENST00000546416.5	0.917	0.519	5.297	0.885(8475)	0.858(602)	0.949(16497)	non tumor-specific	alt_3prime;exon_skip	yes
DLGAP1-AS1_LS007	chr18:3596675|3597176:+	DLGAP1-AS1	DLGAP1 antisense RNA 1	lncRNA gene	no	ENST00000574411.5;ENST00000573355.1	3.848	2.645	4.229	0.871(8346)	0.889(624)	0.852(14804)	non tumor-specific	nAS	yes
UN_INPPL1_LS0125	chr11:72238431|72238559:+	INPPL1	inositol polyphosphate phosphatase like 1	protein coding gene	yes	.	1.978	0.070	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_MYO1C_LS0030	chr17:1465022|1467995:+	MYO1C	myosin IE	protein coding gene	no	.	2.459	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
BRDT_LS041	chr1:92004619|92005119:+	BRDT	bromodomain testis associated	protein coding gene	no	ENST00000362005.7;ENST00000370389.6;ENST00000394530.7;ENST00000399546.6;ENST00000402388.1	22.726	0.834	0.732	0.071(678)	0.034(24)	0.074(1279)	non tumor-specific	nAS	yes
MRM2_LS004	chr7:2235564|2239181:-	MRM2	mitochondrial rRNA methyltransferase 2	protein coding gene	no	ENST00000407040.1	0.037	0.091	1.101	0.752(7202)	0.755(530)	0.361(6283)	non tumor-specific	nAS	yes
ATG4C_LS002	chr1:62784273|62803719:+	ATG4C	autophagy related 4C cysteine peptidase	protein coding gene	no	ENST00000317868.8	4.706	3.038	2.563	0.869(8330)	0.942(661)	0.879(15278)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AP1B1_LS0148	chr22:29363100|29419213:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	11.715	3.591	0.000	0.004(40)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_PHACTR3_LS0008	chr20:59605132|59612381:+	PHACTR3	phosphatase and actin regulator 3	protein coding gene	no	.	2.395	1.755	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AP000759.1_UP_LS0008	chr11:66246373|66257744:-	AP000759.1	-	lncRNA gene	no	.	2.077	0.379	0.000	0.033(320)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_TET2_LS0005	chr4:105171927|105190360:+	TET2	tet methylcytosine dioxygenase 2	protein coding gene	yes	.	0.718	0.180	0.000	0.01(99)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UNC13B_LS049	chr9:35399034|35399161:+	UNC13B	unc-13 homolog B	protein coding gene	no	ENST00000619578.4;ENST00000617908.4;ENST00000396787.5;ENST00000635942.1;ENST00000378495.7;ENST00000634487.1;ENST00000378496.8;ENST00000637271.1;ENST00000636694.1;ENST00000481299.1	35.915	39.850	44.852	0.971(9299)	0.993(697)	0.959(16670)	non tumor-specific	nAS	yes
UN_TPD52L2_LS0009	chr20:63869364|63873668:+	TPD52L2	TPD52 like 2	protein coding gene	no	.	3.537	0.071	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_LAP3_LS0004	chr4:17585136|17585905:+	LAP3	leucine aminopeptidase 3	protein coding gene	no	.	3.668	0.175	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CBX3P5_UP_LS0001	chr12:95305998|95314058:-	CBX3P5	chromobox 3 pseudogene 5	pseudogene	no	.	0.892	2.154	0.000	0.002(15)	0.011(8)	0(0)	non tumor-specific	nAS	no
CLCN7_LS011	chr16:1449327|1450497:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	ENST00000382745.8;ENST00000448525.5;ENST00000262318.12;ENST00000382745.8;ENST00000448525.5;ENST00000262318.12	123.734	51.473	43.429	0.994(9525)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DUX4L50_UP_LS0016	chr9:63830670|63833339:-	DUX4L50	double homeobox 4 like 50 (pseudogene)	pseudogene	no	.	1.235	0.387	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SEC14L1_LS0120	chr17:77215971|77215998:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	6.146	0.410	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
DZANK1_LS024	chr20:18449069|18453731:-	DZANK1	double zinc ribbon and ankyrin repeat domains 1	protein coding gene	no	ENST00000377630.9;ENST00000460891.5	0.648	0.403	0.800	0.159(1524)	0.236(166)	0.318(5519)	non tumor-specific	exon_skip	yes
KRT25_LS005	chr17:40751326|40753860:-	KRT25	keratin 25	protein coding gene	no	ENST00000312150.4	10.368	4.864	0.855	0.011(110)	0.004(3)	0.088(1534)	non tumor-specific	nAS	yes
UN_TMEM144_LS0008	chr4:158235505|158237534:+	TMEM144	transmembrane protein 144	protein coding gene	no	.	1.759	0.533	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_RNASEH2B_LS0005	chr13:50934999|50941850:+	RNASEH2B	ribonuclease H2 subunit B	protein coding gene	no	.	4.265	0.626	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
EPSTI1_LS020	chr13:42969177|42969627:-	EPSTI1	epithelial stromal interaction 1	protein coding gene	no	ENST00000542706.5	0.208	0.177	0.663	0.033(312)	0.021(15)	0.04(695)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DYRK1B_LS006	chr19:39826867|39827285:-	DYRK1B	dual specificity tyrosine phosphorylation regulated kinase 1B	protein coding gene	no	ENST00000430012.6;ENST00000430012.6	24.610	12.143	10.593	0.983(9420)	0.994(698)	0.973(16915)	non tumor-specific	alt_3prime;exon_skip	yes
UN_STMN4_UP_LS0001	chr8:27298559|27325611:-	STMN4	stathmin 4	protein coding gene	no	.	2.010	1.131	0.000	0.004(41)	0.009(6)	0(0)	non tumor-specific	nAS	no
HDAC2-AS2_LS023	chr6:114179157|114230157:+	HDAC2-AS2	HDAC2 and HS3ST5 antisense RNA 2	lncRNA gene	no	ENST00000523087.1	0.654	0.000	1.051	0(3)	0(0)	0.056(970)	non tumor-specific	nAS	yes
IGF1R_LS023	chr15:98924684|98929558:+	IGF1R	insulin like growth factor 1 receptor	protein coding gene	yes	ENST00000650285.1;ENST00000268035.10;ENST00000560972.1	8.370	6.212	7.277	0.887(8499)	0.903(634)	0.951(16536)	non tumor-specific	alt_3prime	yes
RMST_LS012	chr12:97492606|97493177:+	RMST	rhabdomyosarcoma 2 associated transcript	lncRNA gene	no	ENST00000640149.1;ENST00000538559.6;ENST00000639542.1;ENST00000639121.1;ENST00000548886.1	0.223	0.003	2.005	0.105(1009)	0.12(84)	0.2(3484)	non tumor-specific	nAS	yes
UN_ST8SIA1_LS0035	chr12:22287293|22376666:-	ST8SIA1	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein coding gene	no	.	2.935	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
BAK1_LS008	chr6:33575803|33575864:-	BAK1	BCL2 antagonist/killer 1	protein coding gene	no	ENST00000360661.9	0.353	0.005	0.610	0.007(64)	0.001(1)	0.003(51)	non tumor-specific	nAS	yes
NKG7_LS009	chr19:51372202|51372379:-	NKG7	natural killer cell granule protein 7	protein coding gene	no	ENST00000595217.1;ENST00000600427.5;ENST00000595157.1	0.515	0.655	1.587	0.797(7637)	0.872(612)	0.551(9578)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MYH9_LS0117	chr22:36282176|36282593:+	MYH9	myosin heavy chain 9	protein coding gene	yes	.	6.017	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
TYK2_LS053	chr19:10368371|10368532:-	TYK2	tyrosine kinase 2	protein coding gene	no	ENST00000525824.1	0.040	0.043	0.918	0.669(6412)	0.705(495)	0.479(8318)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
STK25_LS031	chr2:241501708|241508443:-	STK25	serine/threonine kinase 25	protein coding gene	no	ENST00000535007.5;ENST00000442307.5	0.148	0.175	2.481	0.514(4921)	0.546(383)	0.887(15414)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DPP4_LS0001	chr2:161993384|161994207:-	DPP4	dipeptidyl peptidase 4	protein coding gene	yes	.	4.899	2.316	0.000	0.001(14)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RNMT_LS0010	chr18:13743571|13746220:+	RNMT	RNA guanine-7 methyltransferase	protein coding gene	no	.	1.329	0.367	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0851	chr14:105668386|105741513:+	AC246787.2	-	lncRNA gene	no	.	20.932	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPL45P2_LS0025	chr17:47488955|47490166:-	MRPL45P2	mitochondrial ribosomal protein L45 pseudogene 2	pseudogene	no	.	9.400	4.803	0.000	0.641(6137)	0.677(475)	0(0)	non tumor-specific	nAS	no
PLEC_LS019	chr8:143930062|143930144:-	PLEC	plectin	protein coding gene	no	ENST00000345136.7;ENST00000357649.6;ENST00000354589.7;ENST00000398774.6;ENST00000322810.8;ENST00000354958.6;ENST00000356346.7;ENST00000436759.6;ENST00000527303.2;ENST00000527096.5	43.134	28.035	33.679	0.963(9226)	0.986(692)	0.978(16998)	non tumor-specific	exon_skip	yes
MBP_LS027	chr18:76988942|76989956:-	MBP	proteoglycan 2, pro eosinophil major basic protein	protein coding gene	no	ENST00000397875.7	0.000	0.001	2.371	0(0)	0.003(2)	0.151(2627)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RRAGA_LS0008	chr9:19049536|19049633:+	RRAGA	Ras related GTP binding A	protein coding gene	no	.	3.332	0.611	0.000	0.006(53)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_DNAJC10_LS0047	chr2:182748376|182751658:+	DNAJC10	DnaJ heat shock protein family (Hsp40) member C10	protein coding gene	no	.	1.339	0.072	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_TPTE2P1_LS0040	chr13:24954869|24968206:-	TPTE2P1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudogene	no	.	2.548	1.001	0.000	0.03(292)	0.053(37)	0(0)	non tumor-specific	nAS	no
UN_AC106706.1_UP_LS0002	chr3:194686271|194686697:+	AC106706.1	-	lncRNA gene	no	.	1.518	0.796	0.000	0.005(48)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_RNU6-356P_UP_LS0010	chr8:40494101|40543113:+	RNU6-356P	RNA, U6 small nuclear 356, pseudogene	small non-coding RNA gene	no	.	2.708	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FHL2_LS0035	chr2:105396697|105438399:-	FHL2	four and a half LIM domains 2	protein coding gene	yes	.	13.327	2.728	0.000	0.006(53)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
RSU1P2_LS001	chr10:45100499|45106616:-	RSU1P2	Ras suppressor protein 1 pseudogene 2	pseudogene	no	ENST00000448600.5;ENST00000619977.1;ENST00000423875.1	0.060	0.006	0.753	0.038(362)	0.019(13)	0.082(1426)	non tumor-specific	nAS	yes
UN_MAP1LC3A_UP_LS0004	chr20:34515500|34526268:+	MAP1LC3A	microtubule associated protein 1 light chain 3 alpha	protein coding gene	no	.	2.587	4.165	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
ZNF512B_LS006	chr20:63962004|63962273:-	ZNF512B	zinc finger protein 512B	protein coding gene	no	ENST00000369888.5	29.229	14.862	25.190	0.929(8899)	0.98(688)	0.974(16938)	non tumor-specific	exon_skip	yes
UN_S100A9_LS0043	chr1:153360817|153360972:-	S100A9	S100 calcium binding protein A9	protein coding gene	no	.	27.064	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PYGM_LS005	chr11:64751466|64751597:-	PYGM	glycogen phosphorylase, muscle associated	protein coding gene	no	ENST00000377432.7;ENST00000164139.3;ENST00000462303.1	3.003	13.779	22.697	0.639(6120)	0.892(626)	0.964(16759)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PPIAP65_UP_LS0044	chr2:128594504|128595302:+	PPIAP65	peptidylprolyl isomerase A pseudogene 65	pseudogene	no	.	0.611	1.366	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
SCART1_LS015	chr10:133466381|133467198:+	SCART1	scavenger receptor family member expressed on T cells 1	protein coding gene	no	ENST00000482993.6;ENST00000640237.1;ENST00000463137.5;ENST00000488261.6;ENST00000462252.1	0.054	0.170	2.593	0.433(4149)	0.321(225)	0.828(14386)	non tumor-specific	nAS	yes
COL4A6_LS005	chrX:108163038|108164600:-	COL4A6	collagen type IV alpha 6 chain	protein coding gene	no	ENST00000334504.11;ENST00000372216.8;ENST00000621266.4;ENST00000394872.6;ENST00000545689.2	7.950	8.139	3.457	0.307(2941)	0.637(447)	0.681(11838)	non tumor-specific	exon_skip	yes
FRMPD1_LS002	chr9:37668593|37692638:+	FRMPD1	FERM and PDZ domain containing 1	protein coding gene	no	ENST00000539465.5	0.678	0.025	0.675	0.009(83)	0.003(2)	0.025(435)	non tumor-specific	nAS	yes
UN_IGKV1-9_UP_LS0009	chr2:89020095|89046093:-	IGKV1-9	immunoglobulin kappa variable 1-9	no	no	.	1.628	0.122	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF788P_LS002	chr19:12092470|12094066:+	ZNF788P	zinc finger family member 788, pseudogene	pseudogene	no	ENST00000595703.5	0.209	0.049	0.634	0.014(134)	0.02(14)	0.035(607)	non tumor-specific	nAS	yes
UN_MYCBP2_LS0004	chr13:77051918|77052148:-	MYCBP2	MYC binding protein 2	protein coding gene	no	.	1.624	0.433	0.000	0.007(63)	0.01(7)	0(0)	non tumor-specific	nAS	no
RGL2_LS006	chr6:33293680|33293795:-	RGL2	ral guanine nucleotide dissociation stimulator like 2	protein coding gene	no	.;.	8.038	0.791	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
DENND5A_LS041	chr11:9206782|9207173:-	DENND5A	DENN domain containing 5A	protein coding gene	no	ENST00000530780.1	0.155	0.175	3.628	0.066(635)	0.017(12)	0.204(3551)	non tumor-specific	exon_skip	yes
GBP5_LS014	chr1:89269574|89270755:-	GBP5	guanylate binding protein 5	protein coding gene	no	ENST00000370459.7	3.555	1.681	1.340	0.718(6881)	0.695(488)	0.438(7615)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SLC12A1_LS023	chr15:48235004|48236987:+	SLC12A1	solute carrier family 12 member 1	protein coding gene	no	ENST00000330289.10	0.725	5.931	1.101	0.008(76)	0.179(126)	0.019(322)	non tumor-specific	alt_3prime	yes
UN_FAR2P1_LS0013	chr2:130034377|130035193:-	FAR2P1	fatty acyl-CoA reductase 2 pseudogene 1	pseudogene	no	.	2.365	0.003	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC104794.2_UP_LS0019	chr2:10042776|10043310:-	AC104794.2	-	lncRNA gene	no	.	1.109	0.534	0.000	0.131(1255)	0.244(171)	0(0)	non tumor-specific	nAS	no
UN_SPICE1_LS0020	chr3:113506605|113507402:-	SPICE1	spindle and centriole associated protein 1	protein coding gene	no	.	1.161	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STK11_LS0036	chr19:1221340|1221663:+	STK11	serine/threonine kinase 11	protein coding gene	yes	.	2.332	0.157	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CHD2_LS037	chr15:92971927|92972265:+	CHD2	chromodomain helicase DNA binding protein 2	protein coding gene	no	ENST00000626874.2;ENST00000394196.8;ENST00000635856.1;ENST00000637572.1;ENST00000636881.1;ENST00000628118.1	12.155	8.349	14.986	0.878(8410)	0.957(672)	0.973(16906)	non tumor-specific	exon_skip	yes
MIF4GD_LS003	chr17:75267630|75267746:-	MIF4GD	MIF4G domain containing	protein coding gene	no	ENST00000325102.12;ENST00000618645.4;ENST00000245551.9;ENST00000579297.5;ENST00000577542.5;ENST00000649805.1;ENST00000579119.5;ENST00000580717.5;ENST00000577240.1	43.385	25.391	35.713	0.994(9526)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZAN_LS045	chr7:100794018|100794120:+	ZAN	zonadhesin	protein coding gene	no	ENST00000613979.4;ENST00000542585.5;ENST00000618565.4	3.145	0.000	0.684	0.006(62)	0(0)	0.021(367)	non tumor-specific	exon_skip;intron_retention	yes
CAPN8_LS015	chr1:223551017|223553832:-	CAPN8	calpain 8	protein coding gene	no	ENST00000366872.9	12.960	7.727	1.785	0.318(3046)	0.513(360)	0.467(8117)	non tumor-specific	nAS	yes
UN_SLC39A14_LS0013	chr8:22390847|22393054:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	.	1.686	1.619	0.000	0.036(342)	0.095(67)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BHMG1_LS014	chr19:45763427|45763971:+	BHMG1	basic helix-loop-helix and HMG-box containing 1	protein coding gene	no	ENST00000457052.2	19.252	0.000	0.892	0.009(84)	0(0)	0.05(868)	non tumor-specific	nAS	yes
AC093599.1_LS002	chr4:153036980|153066190:+	AC093599.1	-	lncRNA gene	no	ENST00000515232.1	1.533	0.000	0.683	0.006(60)	0(0)	0.023(397)	non tumor-specific	nAS	yes
UN_HHAT_LS0025	chr1:210365181|210366787:-	HHAT	hedgehog acyltransferase	protein coding gene	no	.	1.874	0.314	0.000	0.01(97)	0.026(18)	0(0)	non tumor-specific	nAS	no
GABBR2_LS001	chr9:98290749|98293785:-	GABBR2	gamma-aminobutyric acid type B receptor subunit 2	protein coding gene	no	ENST00000259455.3;ENST00000637410.1	10.658	14.530	4.017	0.227(2176)	0.131(92)	0.326(5660)	non tumor-specific	nAS	yes
UN_AL096803.1_UP_LS0002	chr1:186568249|186568368:+	AL096803.1	-	pseudogene	no	.	3.267	1.627	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
MFAP1_LS008	chr15:43817448|43824491:-	MFAP1	microfibril associated protein 1	protein coding gene	no	ENST00000267812.3	35.183	23.517	24.137	0.986(9446)	0.993(697)	0.979(17009)	non tumor-specific	nAS	yes
MPDZ_LS007	chr9:13113054|13113931:-	MPDZ	multiple PDZ domain crumbs cell polarity complex component	protein coding gene	no	ENST00000319217.11;ENST00000381017.6;ENST00000541718.5;ENST00000381022.6;ENST00000539508.5;ENST00000438511.5;ENST00000319198.10;ENST00000545857.5;ENST00000538841.5;ENST00000536827.5;ENST00000447879.5;ENST00000542806.5;ENST00000546205.5	13.156	13.997	44.030	0.858(8217)	0.959(673)	0.937(16279)	non tumor-specific	exon_skip	yes
SKP1_LS011	chr5:134171038|134173926:-	SKP1	S-phase kinase associated protein 1	protein coding gene	no	ENST00000523966.5	0.085	2.273	0.745	0.108(1039)	0.101(71)	0.266(4615)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RNU6-211P_UP_LS0001	chr5:80437235|80482869:-	RNU6-211P	RNA, U6 small nuclear 211, pseudogene	small non-coding RNA gene	no	.	2.031	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADAMTSL2_LS0014	chr9:133536802|133537413:+	ADAMTSL2	ADAMTS like 2	protein coding gene	no	.	1.154	0.055	0.000	0.005(49)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC02511_LS0003	chr4:136813731|137089561:-	LINC02511	long intergenic non-protein coding RNA 2511	lncRNA gene	no	.	3.523	0.721	0.000	0.002(20)	0.016(11)	0(0)	non tumor-specific	nAS	no
TMEM53_LS015	chr1:44655119|44674331:-	TMEM53	transmembrane protein 53	protein coding gene	no	.;.	3.140	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
COX7A1_LS003	chr19:36151546|36151696:-	COX7A1	cytochrome c oxidase subunit 7A1	protein coding gene	no	ENST00000589154.1	2.051	3.550	5.911	0.772(7392)	0.95(667)	0.882(15339)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
OBSCN_LS009	chr1:228217288|228219324:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000570156.6;ENST00000366707.9	2.644	1.018	1.333	0.056(540)	0.098(69)	0.519(9023)	non tumor-specific	exon_skip	yes
LEPR_LS019	chr1:65621458|65622906:+	LEPR	leptin receptor	protein coding gene	no	ENST00000371059.7;ENST00000371060.7;ENST00000349533.10;ENST00000344610.12;ENST00000616738.4;ENST00000371058.1;ENST00000471762.1	11.479	34.601	11.120	0.923(8840)	0.994(698)	0.956(16612)	non tumor-specific	exon_skip	yes
MAPK10_LS043	chr4:86194407|86354530:-	MAPK10	mitogen-activated protein kinase 10	protein coding gene	yes	ENST00000641010.1;ENST00000641324.1;ENST00000641102.1;ENST00000638225.1;ENST00000642060.1;ENST00000641208.1;ENST00000641903.1;ENST00000641803.1;ENST00000564854.2;ENST00000641983.1;ENST00000641462.1;ENST00000641066.1;ENST00000642035.1;ENST00000641410.1;ENST00000641051.1;ENST00000641952.1;ENST00000638313.1;ENST00000641052.1;ENST00000395169.9;ENST00000641718.1;ENST00000641902.1;ENST00000641553.1;ENST00000641287.1;ENST00000641767.1;ENST00000641657.1;ENST00000639242.1;ENST00000641050.1;ENST00000641493.1;ENST00000641217.1;ENST00000641997.1;ENST00000641634.1;ENST00000641283.1;ENST00000641854.1;ENST00000641170.1;ENST00000641297.1;ENST00000639972.2;ENST00000641385.1;ENST00000642006.1;ENST00000641405.1;ENST00000641047.1;ENST00000641985.1;ENST00000641317.1;ENST00000359221.8;ENST00000395157.9;ENST00000641435.1;ENST00000310816.8;ENST00000638499.1;ENST00000395166.6;ENST00000449047.6;ENST00000641607.1;ENST00000640970.1;ENST00000641917.1;ENST00000641265.1;ENST00000641041.1;ENST00000641120.1;ENST00000642038.1;ENST00000640490.1;ENST00000641358.1;ENST00000641166.1;ENST00000641221.1;ENST00000640858.1;ENST00000641253.1;ENST00000641379.1;ENST00000641452.1;ENST00000361569.8;ENST00000395160.9;ENST00000641737.1;ENST00000641989.1;ENST00000512689.6;ENST00000642023.1;ENST00000641831.1;ENST00000641384.1;ENST00000641609.1;ENST00000641157.1;ENST00000642009.1;ENST00000513186.7;ENST00000639234.1;ENST00000639175.1;ENST00000641148.1;ENST00000641467.1;ENST00000640064.1;ENST00000641306.1;ENST00000641531.1;ENST00000515650.2;ENST00000641595.1;ENST00000641954.1;ENST00000641485.1;ENST00000641864.1;ENST00000642013.1;ENST00000641108.1;ENST00000641203.1;ENST00000641563.1;ENST00000511167.6;ENST00000642098.1;ENST00000513839.5;ENST00000642081.1;ENST00000502302.6;ENST00000641855.1;ENST00000641126.1;ENST00000641763.1;ENST00000641273.1;ENST00000641798.1;ENST00000506773.7;ENST00000641777.1;ENST00000641561.1;ENST00000641907.1;ENST00000642049.1;ENST00000640527.1;ENST00000509464.7;ENST00000512046.2;ENST00000641300.1;ENST00000505356.6;ENST00000641022.1;ENST00000642136.1;ENST00000641080.1;ENST00000641782.1;ENST00000638867.2	4.575	7.216	7.228	0.613(5870)	0.873(613)	0.85(14781)	non tumor-specific	exon_skip	yes
SMARCC1_LS014	chr3:47670717|47675475:-	SMARCC1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein coding gene	yes	ENST00000254480.9;ENST00000425518.5;ENST00000483847.1	62.199	34.130	23.464	0.979(9384)	0.987(693)	0.978(17006)	non tumor-specific	exon_skip	yes
UN_NCK2_LS0053	chr2:105881644|105881669:-	NCK2	NCK adaptor protein 2	protein coding gene	no	.	2.429	0.487	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EP300_LS0072	chr22:41178690|41178715:-	EP300	E1A binding protein p300	protein coding gene	no	.	2.070	0.390	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCN1A_LS045	chr2:166077847|166127771:-	SCN1A	sodium voltage-gated channel alpha subunit 1	protein coding gene	no	ENST00000636759.1	1.937	0.079	0.867	0.001(14)	0.003(2)	0.042(737)	non tumor-specific	alt_3prime;exon_skip	yes
ALOX15_LS004	chr17:4632982|4633146:-	ALOX15	arachidonate 15-lipoxygenase	protein coding gene	yes	ENST00000570836.5;ENST00000293761.7;ENST00000574640.1	7.611	5.027	1.735	0.208(1995)	0.281(197)	0.397(6899)	non tumor-specific	nAS	yes
UBR5_LS079	chr8:102360665|102361125:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	ENST00000520539.5;ENST00000220959.8;ENST00000521922.5;ENST00000522327.1	11.611	7.953	8.131	0.858(8225)	0.916(643)	0.949(16493)	non tumor-specific	intron_retention	yes
UN_BIRC6_LS0092	chr2:32545860|32547856:+	BIRC6	baculoviral IAP repeat containing 6	protein coding gene	no	.	2.603	0.855	0.000	0.025(236)	0.026(18)	0(0)	non tumor-specific	alt_3prime	no
GEN1_LS018	chr2:17780121|17780621:+	GEN1	GEN1 Holliday junction 5' flap endonuclease	protein coding gene	no	ENST00000317402.11;ENST00000381254.6;ENST00000528873.2	7.873	2.098	4.096	0.86(8241)	0.778(546)	0.913(15878)	non tumor-specific	nAS	yes
GOLGA8S_LS018	chr15:23364623|23364719:+	GOLGA8S	golgin A8 family member S	protein coding gene	no	ENST00000604046.1;ENST00000562295.1	1.680	0.311	0.717	0.013(129)	0.031(22)	0.095(1654)	non tumor-specific	nAS	yes
UN_KYNU_LS0029	chr2:142957715|142985084:+	KYNU	kynureninase	protein coding gene	no	.	5.371	0.918	0.000	0.009(84)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
MTM1_LS017	chrX:150663609|150671428:+	MTM1	myotubularin 1	protein coding gene	no	ENST00000370396.6	17.867	15.401	15.271	0.969(9280)	0.996(699)	0.978(16993)	non tumor-specific	alt_3prime	yes
MYH16_LS025	chr7:99297796|99297892:+	MYH16	myosin heavy chain 16 pseudogene	pseudogene	no	ENST00000439784.7	4.431	0.049	0.684	0.022(207)	0.001(1)	0.063(1100)	non tumor-specific	nAS	yes
UN_AL691442.1_LS0001	chr1:155063936|155064442:+	AL691442.1	-	protein coding gene	no	.	2.953	0.628	0.000	0.082(784)	0.07(49)	0(0)	non tumor-specific	nAS	no
AC098820.2_LS001	chr2:216385384|216386779:-	AC098820.2	-	lncRNA gene	no	ENST00000457694.1	1.091	0.196	0.701	0.003(33)	0.003(2)	0.049(854)	non tumor-specific	nAS	yes
ITPR1_LS085	chr3:4836935|4846139:+	ITPR1	inositol 1,4,5-trisphosphate receptor type 1	protein coding gene	no	ENST00000357086.10;ENST00000302640.12;ENST00000354582.11;ENST00000456211.8;ENST00000648266.1;ENST00000544951.6;ENST00000650294.1;ENST00000649015.1;ENST00000648309.1;ENST00000443694.4;ENST00000648038.1;ENST00000647717.1;ENST00000648431.1;ENST00000648212.1;ENST00000648016.1;ENST00000647708.1;ENST00000649144.1;ENST00000649694.1;ENST00000467545.6;ENST00000650139.1;ENST00000649767.1;ENST00000650074.1;ENST00000463980.6;ENST00000493491.6;ENST00000648208.1;ENST00000649314.1;ENST00000650552.1;ENST00000648770.1;ENST00000647997.1;ENST00000649430.1;ENST00000649139.1;ENST00000647685.1;ENST00000649908.1	32.127	45.503	46.830	0.895(8579)	0.976(685)	0.977(16989)	non tumor-specific	exon_skip	yes
WDFY3_LS041	chr4:84774981|84775065:-	WDFY3	WD repeat and FYVE domain containing 3	protein coding gene	no	ENST00000295888.8	7.542	6.944	7.249	0.481(4613)	0.687(482)	0.953(16560)	non tumor-specific	nAS	yes
SIK3_LS016	chr11:116863818|116867946:-	SIK3	SIK family kinase 3	protein coding gene	no	ENST00000445177.5;ENST00000446921.6	17.631	15.035	16.013	0.942(9025)	0.986(692)	0.978(16994)	non tumor-specific	exon_skip;mutex_exons	yes
PPFIA2_LS024	chr12:81344693|81347664:-	PPFIA2	PTPRF interacting protein alpha 2	protein coding gene	no	ENST00000541017.5;ENST00000551461.5	0.062	0.000	0.762	0.001(14)	0(0)	0.047(812)	non tumor-specific	alt_5prime	yes
SNAP91_LS023	chr6:83593259|83605685:-	SNAP91	synaptosome associated protein 91	protein coding gene	no	ENST00000521931.5	0.617	0.083	0.671	0.065(624)	0.019(13)	0.023(405)	non tumor-specific	exon_skip	yes
AKAP8_LS022	chr19:15374065|15374603:-	AKAP8	A-kinase anchoring protein 8	protein coding gene	no	ENST00000269701.6;ENST00000595416.1	13.367	7.546	17.077	0.965(9249)	0.987(693)	0.976(16971)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM132B_LS001	chr12:125186866|125349452:+	TMEM132B	transmembrane protein 132B	protein coding gene	no	ENST00000418253.2	0.758	0.311	1.330	0.186(1786)	0.191(134)	0.368(6395)	non tumor-specific	exon_skip	yes
TMEM156_LS001	chr4:38967641|38971032:-	TMEM156	transmembrane protein 156	protein coding gene	no	ENST00000381938.3	7.415	1.847	1.623	0.501(4800)	0.483(339)	0.493(8577)	non tumor-specific	exon_skip	yes
TBC1D27P_LS004	chr17:16926489|16926869:-	TBC1D27P	TBC1 domain family member 27, pseudogene	pseudogene	no	ENST00000261651.6;ENST00000424239.5	6.124	4.082	1.481	0.011(107)	0.017(12)	0.19(3303)	non tumor-specific	nAS	yes
UN_FAM157A_LS0139	chr3:198220368|198220564:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	3.405	0.415	0.000	0.011(103)	0.006(4)	0(0)	non tumor-specific	nAS	no
BTC_LS007	chr4:74750719|74770058:-	BTC	betacellulin	protein coding gene	no	.;.	1.455	0.252	0.000	0.006(58)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KLK4_LS0008	chr19:50906552|50906835:-	KLK4	kallikrein related peptidase 4	protein coding gene	no	.	62.790	7.454	0.000	0.016(154)	0.016(11)	0(0)	non tumor-specific	intron_retention	no
MIAT_LS019	chr22:26663509|26665531:+	MIAT	myocardial infarction associated transcript	lncRNA gene	no	ENST00000425476.5;ENST00000413665.5	0.305	0.123	1.379	0.231(2215)	0.088(62)	0.349(6069)	non tumor-specific	nAS	yes
SAR1B_LS005	chr5:134609674|134612691:-	SAR1B	secretion associated Ras related GTPase 1B	protein coding gene	no	ENST00000402673.6;ENST00000507419.5;ENST00000508363.5;ENST00000502539.5;ENST00000439578.5;ENST00000509937.5;ENST00000509730.5;ENST00000503318.5;ENST00000505758.5;ENST00000502286.1	76.890	63.728	45.874	0.996(9547)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip;mutex_exons	yes
ZNF320_LS023	chr19:52891346|52897510:-	ZNF320	zinc finger protein 320	protein coding gene	no	ENST00000594741.5;ENST00000594741.5	0.076	0.054	0.670	0.175(1675)	0.184(129)	0.09(1566)	non tumor-specific	alt_5prime;exon_skip	yes
LCN1_LS005	chr9:135524931|135525132:+	LCN1	lipocalin 1	protein coding gene	no	ENST00000263598.6;ENST00000371781.3	8.912	5.552	1.366	0.061(580)	0.033(23)	0.147(2551)	non tumor-specific	nAS	yes
NLRP11_LS002	chr19:55788977|55789229:-	NLRP11	NLR family pyrin domain containing 11	protein coding gene	no	ENST00000589824.6;ENST00000592953.5;ENST00000589093.5;ENST00000590409.5	5.943	0.520	0.800	0.096(920)	0.047(33)	0.075(1296)	non tumor-specific	exon_skip	yes
UN_AP000924.1_LS0028	chr11:110382021|110406244:+	AP000924.1	-	lncRNA gene	no	.	3.252	1.831	0.000	0.055(529)	0.04(28)	0(0)	non tumor-specific	nAS	no
UN_TAF15_LS0013	chr17:35733826|35735038:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	1.053	0.296	0.000	0.004(41)	0.014(10)	0(0)	non tumor-specific	alt_5prime	no
UN_CBFB_LS0020	chr16:67079782|67082213:+	CBFB	core-binding factor subunit beta	protein coding gene	yes	.	2.910	0.208	0.000	0.016(152)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_B4GALNT3_LS0050	chr12:551027|552063:+	B4GALNT3	beta-1,4-N-acetyl-galactosaminyltransferase 3	protein coding gene	no	.	6.646	5.632	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
SLC38A5_LS024	chrX:48467925|48468505:-	SLC38A5	solute carrier family 38 member 5	protein coding gene	no	ENST00000441948.5	0.246	0.032	0.803	0.343(3291)	0.326(229)	0.173(3006)	non tumor-specific	alt_5prime	yes
SVIL_LS033	chr10:29512861|29522410:-	SVIL	supervillin	protein coding gene	no	ENST00000375400.7;ENST00000375398.6;ENST00000355867.8;ENST00000632315.1;ENST00000464984.1	23.055	38.113	34.776	0.915(8763)	0.979(687)	0.965(16779)	non tumor-specific	alt_5prime;exon_skip	yes
SCYL1_LS001	chr11:65525264|65525574:+	SCYL1	SCY1 like pseudokinase 1	protein coding gene	yes	ENST00000270176.9;ENST00000525364.5;ENST00000420247.6;ENST00000533862.5;ENST00000524944.5	51.240	34.022	42.736	0.961(9206)	0.979(687)	0.979(17020)	non tumor-specific	alt_3prime	yes
CDH23_LS072	chr10:71803420|71805806:+	CDH23	cadherin related 23	protein coding gene	no	ENST00000622827.4;ENST00000224721.11;ENST00000642965.1;ENST00000647092.1;ENST00000619887.4;ENST00000398788.4;ENST00000475158.1	3.090	1.171	4.202	0.181(1733)	0.423(297)	0.865(15032)	non tumor-specific	nAS	yes
PKD1P1_LS016	chr16:16319575|16319931:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	ENST00000458669.1	11.164	6.608	0.684	0.842(8071)	0.852(598)	0.129(2238)	non tumor-specific	alt_5prime;exon_skip	yes
BTBD9_LS004	chr6:38288461|38344984:-	BTBD9	BTB domain containing 9	protein coding gene	no	ENST00000314100.10;ENST00000481247.5;ENST00000649492.1;ENST00000419706.6;ENST00000328403.10	7.855	7.806	5.270	0.883(8463)	0.934(656)	0.957(16632)	non tumor-specific	exon_skip	yes
DOCK9_LS025	chr13:98831530|98831649:-	DOCK9	dedicator of cytokinesis 9	protein coding gene	no	ENST00000448493.7;ENST00000400228.6;ENST00000376460.5;ENST00000442173.5;ENST00000630992.2;ENST00000340449.7;ENST00000339416.7;ENST00000449796.5	10.329	11.992	35.034	0.804(7702)	0.913(641)	0.968(16830)	non tumor-specific	exon_skip	yes
UN_ENAH_LS0074	chr1:225567414|225641876:-	ENAH	ENAH actin regulator	protein coding gene	no	.	2.928	0.156	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_DSP_LS0077	chr6:7583184|7583273:+	DSP	desmoplakin	protein coding gene	yes	.	72.349	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_APEX2_LS0019	chrX:55006819|55006846:-	APEX2	apurinic/apyrimidinic endodeoxyribonuclease 2	protein coding gene	no	.	4.281	0.485	0.000	0.007(68)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PECR_LS0017	chr2:216030454|216032789:-	PECR	peroxisomal trans-2-enoyl-CoA reductase	protein coding gene	no	.	1.335	0.073	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
ABTB1_LS020	chr3:127677083|127677168:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000467179.5;ENST00000468137.5;ENST00000474129.1	15.236	14.296	73.740	0.994(9521)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FBXL5_LS0024	chr4:15656342|15659741:-	FBXL5	F-box and leucine rich repeat protein 5	protein coding gene	no	.	1.469	0.040	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
METAP1_LS010	chr4:99031662|99034230:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	ENST00000510107.5	0.042	0.006	0.627	0.077(741)	0.073(51)	0.05(877)	non tumor-specific	exon_skip	yes
UN_FAM169A_LS0010	chr5:74841679|74865342:-	FAM169A	family with sequence similarity 169 member A	protein coding gene	no	.	2.497	0.602	0.000	0.005(51)	0.014(10)	0(0)	non tumor-specific	alt_5prime	no
UN_POLR3A_LS0005	chr10:77985242|77985903:-	POLR3A	RNA polymerase III subunit A	protein coding gene	no	.	2.201	0.160	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_FUK_LS0049	chr16:70479343|70479662:-	FUK	fucose kinase	protein coding gene	no	.	0.749	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTER_LS0001	chr10:16437047|16437363:+	PTER	phosphotriesterase related	protein coding gene	no	.	0.727	0.234	0.000	0.01(97)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
DDX50_LS004	chr10:68901471|68906284:+	DDX50	DExD-box helicase 50	protein coding gene	no	ENST00000483593.5;ENST00000483593.5	0.150	0.187	0.964	0.368(3523)	0.399(280)	0.511(8889)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PLXNB3_LS013	chrX:153769939|153770092:+	PLXNB3	plexin B3	protein coding gene	no	ENST00000538966.5;ENST00000361971.9	9.218	3.031	12.186	0.537(5149)	0.405(284)	0.893(15515)	non tumor-specific	nAS	yes
PTPRB_LS013	chr12:70540957|70544557:-	PTPRB	protein tyrosine phosphatase receptor type B	protein coding gene	no	ENST00000334414.10;ENST00000550358.5;ENST00000538708.5;ENST00000550857.5;ENST00000261266.9	11.553	19.112	18.523	0.795(7620)	0.944(663)	0.924(16058)	non tumor-specific	alt_3prime;exon_skip	yes
MRPS21_LS005	chr1:150294449|150308048:+	MRPS21	mitochondrial ribosomal protein S21	protein coding gene	no	ENST00000614145.4;ENST00000581066.2	192.487	104.819	322.860	0.96(9196)	0.927(651)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PLBD2_LS0291	chr12:113390562|113390730:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	3.536	0.307	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC109466.1_LS027	chr5:164973560|165007369:+	AC109466.1	-	lncRNA gene	no	ENST00000519267.1	2.254	0.147	1.011	0.035(340)	0.038(27)	0.019(324)	non tumor-specific	nAS	yes
TTC27_LS013	chr2:32702920|32733828:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000317907.8;ENST00000647819.1;ENST00000454690.1	25.745	13.768	11.789	0.983(9422)	0.996(699)	0.97(16861)	non tumor-specific	exon_skip	yes
UN_HOXC4_LS0013	chr12:54037586|54047769:+	HOXC4	homeobox C4	protein coding gene	no	.	2.212	0.078	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FANCC_LS0055	chr9:95393029|95411456:-	FANCC	FA complementation group C	protein coding gene	no	.	2.913	0.059	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP005205.3_LS0001	chr18:6728497|6728923:-	AP005205.3	-	lncRNA gene	no	.	1.116	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
NBEA_LS010	chr13:35070852|35098297:+	NBEA	neurobeachin	protein coding gene	no	ENST00000400445.7;ENST00000310336.8;ENST00000629018.2;ENST00000379939.6	3.279	2.997	1.931	0.299(2867)	0.556(390)	0.717(12462)	non tumor-specific	exon_skip	yes
ARC_LS002	chr8:142612252|142612484:-	ARC	nucleolar protein 3	protein coding gene	no	ENST00000356613.3;ENST00000581404.1	12.836	5.521	3.680	0.645(6183)	0.828(581)	0.793(13779)	non tumor-specific	nAS	yes
UN_BRAT1_LS0071	chr7:2548496|2554305:-	BRAT1	BRCA1 associated ATM activator 1	protein coding gene	no	.	1.797	0.495	0.000	0.138(1322)	0.105(74)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TUSC3_LS038	chr8:15757859|15758034:+	TUSC3	tumor suppressor candidate 3	protein coding gene	no	ENST00000511783.2	4.841	1.281	0.655	0.025(241)	0.02(14)	0.038(653)	non tumor-specific	intron_retention	yes
CALCOCO2_LS012	chr17:48844026|48848064:+	CALCOCO2	calcium binding and coiled-coil domain 2	protein coding gene	no	ENST00000575560.5;ENST00000576582.5	0.107	0.420	2.974	0.201(1922)	0.335(235)	0.839(14591)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_SMILR_UP_LS0003	chr8:122485328|122485591:-	SMILR	smooth muscle induced lncRNA, enhancer of proliferation	lncRNA gene	no	.	4.169	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STAT6_LS0083	chr12:57096655|57096748:-	STAT6	signal transducer and activator of transcription 6	protein coding gene	no	.	0.735	0.049	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL162376.1_UP_LS0007	chr13:73235847|73254098:+	AL162376.1	-	lncRNA gene	no	.	2.078	0.310	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
PTP4A2_LS026	chr1:31919658|31924018:-	PTP4A2	protein tyrosine phosphatase 4A2	protein coding gene	yes	ENST00000475464.1	16.683	0.000	0.753	0.001(7)	0(0)	0.222(3852)	non tumor-specific	exon_skip	yes
UN_AC083864.2_UP_LS0050	chr7:36022550|36029611:+	AC083864.2	-	lncRNA gene	no	.	0.998	0.164	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	nAS	no
IMMP2L_LS004	chr7:110665012|110963500:-	IMMP2L	inner mitochondrial membrane peptidase subunit 2	protein coding gene	no	ENST00000489381.1	0.049	0.001	0.624	0.01(96)	0.006(4)	0.024(424)	non tumor-specific	exon_skip;mutex_exons	yes
AP002812.2_LS001	chr11:77830127|77872152:-	AP002812.2	-	lncRNA gene	no	ENST00000525594.1	0.415	0.191	0.921	0.199(1903)	0.177(124)	0.419(7276)	non tumor-specific	nAS	yes
TM7SF3_LS013	chr12:26979936|26995237:-	TM7SF3	transmembrane 7 superfamily member 3	protein coding gene	no	ENST00000542667.5	0.079	0.046	0.638	0.612(5861)	0.718(504)	0.028(479)	non tumor-specific	exon_skip	yes
VAPA_LS008	chr18:9937066|9944924:+	VAPA	VAMP associated protein A	protein coding gene	no	ENST00000340541.4	3.020	6.806	6.501	0.967(9266)	0.981(689)	0.954(16575)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RIC8B_LS003	chr12:106774829|106814696:+	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	ENST00000552619.1	0.191	0.263	0.697	0.653(6259)	0.715(502)	0.16(2781)	non tumor-specific	exon_skip	yes
BX547991.1_LS003	chr10:47590319|47599634:-	BX547991.1	-	lncRNA gene	no	ENST00000582543.2	1.101	2.232	3.809	0.047(450)	0.222(156)	0.021(364)	non tumor-specific	nAS	yes
CARMIL1_LS003	chr6:25284909|25420114:+	CARMIL1	capping protein regulator and myosin 1 linker 1	protein coding gene	no	ENST00000461945.1;ENST00000329474.6	9.811	8.170	4.182	0.771(7391)	0.849(596)	0.865(15029)	non tumor-specific	exon_skip	yes
RFFL_LS010	chr17:35021781|35025183:-	RFFL	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein coding gene	no	ENST00000581265.1	0.297	0.327	0.776	0.237(2269)	0.33(232)	0.226(3923)	non tumor-specific	nAS	yes
UN_FAM50A_LS0022	chrX:154450303|154450424:+	FAM50A	family with sequence similarity 50 member A	protein coding gene	no	.	20.838	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
KLK2_LS032	chr19:50877045|50877644:+	KLK2	kallikrein related peptidase 2	protein coding gene	no	.;.	280.725	74.345	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DACH2_LS006	chrX:86514391|86651036:+	DACH2	dachshund family transcription factor 2	protein coding gene	no	ENST00000373131.5;ENST00000461604.6;ENST00000506327.6;ENST00000373125.8;ENST00000508860.5;ENST00000510272.5;ENST00000613770.4	4.077	0.840	0.762	0.052(494)	0.075(53)	0.098(1696)	non tumor-specific	nAS	yes
UN_MAPKAP1_LS0108	chr9:125672643|125685998:-	MAPKAP1	MAPK associated protein 1	protein coding gene	no	.	1.223	0.477	0.000	0.009(91)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
ANKRD44_LS030	chr2:197125468|197125837:-	ANKRD44	ankyrin repeat domain 44	protein coding gene	no	ENST00000647377.1;ENST00000282272.14;ENST00000328737.6;ENST00000409153.5;ENST00000409919.5	6.188	3.398	4.205	0.68(6513)	0.825(579)	0.923(16038)	non tumor-specific	nAS	yes
AC007099.2_LS001	chr2:75474646|75482438:+	AC007099.2	-	lncRNA gene	no	ENST00000444852.1	0.030	0.000	0.709	0.002(17)	0(0)	0(5)	non tumor-specific	nAS	yes
HOXA13_LS001	chr7:27193558|27194786:-	HOXA13	homeobox A13	protein coding gene	no	ENST00000518136.3	1.814	1.807	1.380	0.354(3387)	0.245(172)	0.197(3419)	non tumor-specific	intron_retention	yes
GRAMD1B_LS025	chr11:123605478|123606609:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	ENST00000638157.1;ENST00000635736.1;ENST00000638086.1;ENST00000456860.6;ENST00000322282.11;ENST00000529750.5;ENST00000532581.5;ENST00000529432.5;ENST00000534764.1;ENST00000646146.1	8.139	9.194	2.740	0.524(5019)	0.551(387)	0.769(13370)	non tumor-specific	exon_skip	yes
UN_ABCG1_LS0010	chr21:42288001|42288211:+	ABCG1	ATP binding cassette subfamily G member 1	protein coding gene	no	.	0.129	0.210	0.000	0.013(128)	0.03(21)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_FAM153A_LS0004	chr5:177716602|177717553:+	FAM153A	family with sequence similarity 153 member A	protein coding gene	no	.	2.336	0.926	0.000	0.003(29)	0.014(10)	0(0)	non tumor-specific	nAS	no
COL5A3_LS032	chr19:9977472|9977594:-	COL5A3	collagen type V alpha 3 chain	protein coding gene	no	ENST00000264828.3	13.174	5.422	27.824	0.809(7751)	0.756(531)	0.952(16549)	non tumor-specific	alt_5prime	yes
LINC00511_LS003	chr17:72323320|72428236:-	LINC00511	long intergenic non-protein coding RNA 511	lncRNA gene	no	ENST00000650419.1;ENST00000581801.6	0.082	0.056	0.888	0.487(4667)	0.205(144)	0.161(2796)	non tumor-specific	nAS	yes
UN_ITPKB_LS0004	chr1:226632346|226632374:+	ITPKB	inositol-trisphosphate 3-kinase B	protein coding gene	no	.	4.225	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC122710.2_LS0013	chr5:6775362|6775559:+	AC122710.2	-	lncRNA gene	no	.	1.753	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
KDM4C_LS008	chr9:6814745|6849507:+	KDM4C	lysine demethylase 4C	protein coding gene	yes	ENST00000536108.5;ENST00000438023.5;ENST00000381306.7;ENST00000381309.7;ENST00000489243.5;ENST00000543771.5;ENST00000536108.5;ENST00000438023.5;ENST00000381306.7;ENST00000381309.7;ENST00000489243.5;ENST00000543771.5	8.434	6.386	10.963	0.915(8771)	0.974(684)	0.973(16918)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RUNX1_LS0087	chr21:34993610|34993645:+	RUNX1	RUNX family transcription factor 1	protein coding gene	yes	.	5.850	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NDUFB4_LS0008	chr3:120601257|120602213:+	NDUFB4	NADH:ubiquinone oxidoreductase subunit B4	protein coding gene	no	.	57.872	16.964	0.000	0.021(204)	0.02(14)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SASH1_LS015	chr6:148520382|148525291:+	SASH1	SAM and SH3 domain containing 1	protein coding gene	yes	ENST00000636279.1	1.832	0.869	1.168	0.009(88)	0.013(9)	0.452(7865)	non tumor-specific	nAS	yes
UN_ID1_LS0025	chr20:31605914|31606053:+	ID1	inhibitor of DNA binding 1, HLH protein	protein coding gene	yes	.	27.954	1.212	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_LRPAP1_LS0020	chr4:3512925|3513016:+	LRPAP1	LDL receptor related protein associated protein 1	protein coding gene	no	.	4.329	0.178	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
ATP13A1_LS028	chr19:19656916|19656994:-	ATP13A1	ATPase 13A1	protein coding gene	no	ENST00000291503.9;ENST00000357324.10;ENST00000474955.5	42.964	20.700	33.013	0.984(9430)	0.991(696)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MTG2_LS002	chr20:62183057|62193314:+	MTG2	mitochondrial ribosome associated GTPase 2	protein coding gene	no	.;.	0.785	0.025	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MT-ND5_LS0152	chrM:13959|13999:-	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	protein coding gene	no	.	557.429	83.546	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNTRL_LS026	chr9:121146256|121148672:+	CNTRL	centriolin	protein coding gene	no	ENST00000373855.5;ENST00000238341.9;ENST00000373851.6;ENST00000373850.5;ENST00000373847.5;ENST00000431571.5	9.081	3.305	5.030	0.852(8166)	0.899(631)	0.937(16295)	non tumor-specific	alt_5prime	yes
UN_CD2_LS0008	chr1:116760632|116768464:+	CD2	CD2 molecule	protein coding gene	no	.	6.632	0.174	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_KLHL34_UP_LS0002	chrX:21675514|21683154:-	KLHL34	kelch like family member 34	protein coding gene	no	.	5.080	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AASDHPPT_LS010	chr11:106094654|106096743:+	AASDHPPT	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein coding gene	no	ENST00000278618.8;ENST00000525660.1;ENST00000534152.1	59.189	36.616	29.674	0.985(9437)	0.989(694)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
SLCO3A1_LS005	chr15:91916458|92094881:+	SLCO3A1	solute carrier organic anion transporter family member 3A1	protein coding gene	no	ENST00000318445.10;ENST00000553653.5;ENST00000424469.2;ENST00000555769.5	16.498	10.214	14.221	0.92(8816)	0.981(689)	0.968(16823)	non tumor-specific	exon_skip	yes
UN_KAZN_LS0047	chr1:14216486|14219498:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	10.694	0.122	0.000	0.012(111)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IGHE_UP_LS0142	chr14:105624950|105643461:-	IGHE	immunoglobulin heavy constant epsilon	no	no	.	592.834	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
IPPK_LS013	chr9:92656551|92658634:-	IPPK	inositol-pentakisphosphate 2-kinase	protein coding gene	no	ENST00000287996.7	9.682	6.427	7.388	0.895(8575)	0.949(666)	0.966(16793)	non tumor-specific	nAS	yes
DSC2_LS024	chr18:31092300|31093559:-	DSC2	desmocollin 3	protein coding gene	no	ENST00000280904.10;ENST00000251081.6;ENST00000648081.1	23.393	27.253	2.512	0.736(7056)	0.883(620)	0.676(11747)	non tumor-specific	alt_3prime	yes
UN_STEAP3-AS1_UP_LS0012	chr2:119281878|119282371:-	STEAP3-AS1	STEAP3 antisense RNA 1	lncRNA gene	no	.	2.326	0.030	0.000	0.009(83)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CYP2C8_UP_LS0005	chr10:95111470|95111610:-	CYP2C8	cytochrome P450 family 2 subfamily C member 8	protein coding gene	no	.	2.630	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GLIS2_LS0038	chr16:4337804|4337974:-	GLIS2	GLIS family zinc finger 2	protein coding gene	no	.	1.252	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COMMD9_LS0017	chr11:36274772|36277089:-	COMMD9	COMM domain containing 9	protein coding gene	no	.	14.614	4.837	0.000	0.049(472)	0.044(31)	0(0)	non tumor-specific	exon_skip	no
CELA1_LS001	chr12:51328594|51329684:-	CELA1	chymotrypsin like elastase 1	protein coding gene	no	ENST00000293636.1	3.536	1.017	1.015	0.042(404)	0.03(21)	0.183(3175)	non tumor-specific	nAS	yes
UN_C7orf50_LS0125	chr7:1130071|1130181:+	C7orf50	chromosome 7 open reading frame 50	protein coding gene	no	.	1.433	0.400	0.000	0.008(80)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RNF215_LS0012	chr22:30374091|30375524:+	RNF215	ring finger protein 215	protein coding gene	no	.	1.341	0.295	0.000	0.012(113)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TNRC6A_LS036	chr16:24809481|24815147:+	TNRC6A	trinucleotide repeat containing adaptor 6A	protein coding gene	no	ENST00000315183.11;ENST00000395799.7;ENST00000491718.5;ENST00000450465.6;ENST00000477487.5;ENST00000462400.1	18.166	11.720	37.415	0.964(9240)	0.986(692)	0.976(16970)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SARDH_LS004	chr9:133670752|133671535:-	SARDH	sarcosine dehydrogenase	protein coding gene	no	ENST00000371872.8;ENST00000371868.5;ENST00000422262.6;ENST00000439388.5	11.799	23.882	4.055	0.684(6557)	0.823(578)	0.86(14941)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AL139390.1_UP_LS0008	chr6:6753542|6754033:+	AL139390.1	-	lncRNA gene	no	.	2.413	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STK10_LS0034	chr5:172090362|172093697:-	STK10	serine/threonine kinase 10	protein coding gene	yes	.	2.172	0.480	0.000	0.01(100)	0.014(10)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NDC80_LS018	chr18:2608830|2610759:+	NDC80	NDC80 kinetochore complex component	protein coding gene	no	ENST00000261597.8	48.265	6.433	3.466	0.949(9091)	0.674(473)	0.805(14001)	non tumor-specific	exon_skip	yes
UN_HMGN2P46_LS0029	chr15:45547167|45555490:+	HMGN2P46	high mobility group nucleosomal binding domain 2 pseudogene 46	pseudogene	no	.	1.045	0.331	0.000	0.018(170)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_EFR3A_LS0013	chr8:131932572|131940499:+	EFR3A	EFR3 homolog A	protein coding gene	no	.	3.930	2.717	0.000	0.012(115)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CERS5_LS0008	chr12:50131555|50134546:-	CERS5	ceramide synthase 5	protein coding gene	no	.	3.390	0.220	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_FUZ_LS0014	chr19:49809026|49809399:+	FUZ	fuzzy planar cell polarity protein	protein coding gene	no	.	2.811	0.348	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	nAS	no
ZNF317_LS011	chr19:9158908|9160114:+	ZNF317	zinc finger protein 317	protein coding gene	no	ENST00000247956.10;ENST00000360385.7;ENST00000591278.5;ENST00000590152.1	21.024	12.455	11.657	0.972(9309)	0.987(693)	0.974(16923)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARL4C_LS0013	chr2:234495489|234495522:+	ARL4C	ADP ribosylation factor like GTPase 4C	protein coding gene	no	.	3.058	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UBR4_LS035	chr1:19105842|19106569:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7	51.148	39.388	63.314	0.948(9083)	0.987(693)	0.979(17019)	non tumor-specific	nAS	yes
MAN2B2_LS011	chr4:6600756|6605055:+	MAN2B2	mannosidase alpha class 2B member 2	protein coding gene	no	ENST00000285599.7;ENST00000504248.5;ENST00000505907.1	44.378	38.319	31.401	0.979(9376)	0.99(695)	0.978(17003)	non tumor-specific	nAS	yes
AKR1C2_LS025	chr10:5001681|5017900:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.;.	47.183	0.959	0.000	0.025(238)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP001992.1_LS004	chr11:74910804|74911262:+	AP001992.1	-	pseudogene	no	ENST00000533875.1	0.596	0.000	0.729	0.002(20)	0(0)	0.119(2069)	non tumor-specific	nAS	yes
PLPP2_LS001	chr19:281537|282134:-	PLPP2	phospholipid phosphatase 2	protein coding gene	no	ENST00000327790.7;ENST00000434325.6;ENST00000269812.7;ENST00000621795.1;ENST00000633125.1	141.285	51.032	16.783	0.945(9055)	0.986(692)	0.911(15839)	non tumor-specific	alt_3prime	yes
UN_BLOC1S2_LS0004	chr10:100275495|100280128:+	BLOC1S2	biogenesis of lysosomal organelles complex 1 subunit 2	protein coding gene	no	.	1.681	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZFYVE26_LS045	chr14:67814064|67815770:-	ZFYVE26	zinc finger FYVE-type containing 26	protein coding gene	no	ENST00000347230.8;ENST00000554557.5;ENST00000554523.5;ENST00000555452.1;ENST00000557366.5;ENST00000557407.1	6.462	4.115	3.788	0.733(7020)	0.852(598)	0.916(15917)	non tumor-specific	exon_skip	yes
CBWD2_LS013	chr2:113460719|113462408:+	CBWD2	COBW domain containing 2	protein coding gene	no	ENST00000259199.8;ENST00000416503.6;ENST00000433343.6;ENST00000358604.7;ENST00000456188.5;ENST00000492566.1	51.864	32.601	41.550	0.996(9540)	0.997(700)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_OGA_LS0018	chr10:101787523|101789691:-	OGA	O-GlcNAcase	protein coding gene	no	.	3.088	3.999	0.000	0.028(266)	0.033(23)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_POM121C_LS0053	chr7:75441647|75465999:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	.	4.425	1.467	0.000	0.048(462)	0.075(53)	0(0)	non tumor-specific	exon_skip	no
LRRC4C_LS006	chr11:40241598|40319628:-	LRRC4C	leucine rich repeat containing 4C	protein coding gene	no	ENST00000528697.5	1.824	0.039	1.318	0.042(398)	0.019(13)	0.1(1739)	non tumor-specific	exon_skip	yes
AP001595.1_LS001	chr21:26349927|26350267:-	AP001595.1	-	lncRNA gene	no	ENST00000435878.1	0.060	0.000	1.142	0(2)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_PLD3_LS0085	chr19:40374588|40378012:-	PLD3	phospholipase D family member 3	protein coding gene	no	.	0.905	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0096	chr1:618927|633096:-	AL669831.3	-	pseudogene	no	.	113.379	2.323	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	nAS	no
ENPP6_LS006	chr4:184124272|184153554:-	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein coding gene	no	ENST00000296741.6;ENST00000512353.1	3.603	5.510	1.877	0.123(1178)	0.336(236)	0.359(6239)	non tumor-specific	nAS	yes
UN_ZNF141_LS0010	chr4:344430|357903:+	ZNF141	zinc finger protein 141	protein coding gene	no	.	2.657	1.092	0.000	0.108(1039)	0.144(101)	0(0)	non tumor-specific	nAS	no
UBN2_LS018	chr7:139293981|139297787:+	UBN2	ubinuclein 2	protein coding gene	no	ENST00000473989.7;ENST00000609762.1	5.635	3.224	5.852	0.933(8941)	0.93(653)	0.958(16651)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TUBB4A_LS0026	chr19:6494623|6494810:+	TUBB4A	tubulin beta 4A class IVa	protein coding gene	no	.	40.230	22.576	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SOS2_LS0012	chr14:50130762|50132775:-	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein coding gene	no	.	2.743	0.239	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_FTMT_UP_LS0002	chr5:121829582|121840649:+	FTMT	ferritin mitochondrial	protein coding gene	no	.	3.072	0.523	0.000	0.006(58)	0.098(69)	0(0)	non tumor-specific	nAS	no
ESRRA_LS013	chr11:64314911|64315001:+	ESRRA	estrogen related receptor alpha	protein coding gene	no	ENST00000406310.5;ENST00000000442.10;ENST00000539594.5;ENST00000405666.5	120.518	82.022	67.280	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MRPL38_LS001	chr17:75898986|75899158:-	MRPL38	mitochondrial ribosomal protein L38	protein coding gene	no	ENST00000309352.3;ENST00000486101.1;ENST00000480203.5;ENST00000588620.5;ENST00000483393.5	151.128	79.743	125.066	0.991(9490)	0.986(692)	0.979(17021)	non tumor-specific	nAS	yes
KCNIP3_LS002	chr2:95297453|95303044:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	ENST00000461336.5	0.394	0.137	1.066	0.199(1909)	0.242(170)	0.094(1632)	non tumor-specific	alt_3prime	yes
UN_AC132938.1_UP_LS0004	chr17:82382723|82382914:-	AC132938.1	-	lncRNA gene	no	.	1.459	0.096	0.000	0.013(121)	0.026(18)	0(0)	non tumor-specific	nAS	no
KRT86_LS002	chr12:52274722|52275821:+	KRT86	keratin 86	protein coding gene	no	ENST00000423955.6	0.017	0.026	0.670	0.008(74)	0.004(3)	0.006(100)	non tumor-specific	nAS	yes
UN_BAIAP2L1_LS0096	chr7:98386152|98386693:+	BAIAP2L1	BAR/IMD domain containing adaptor protein 2 like 1	protein coding gene	yes	.	36.715	2.147	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
DARS-AS1_LS008	chr2:135997242|135998687:+	DARS-AS1	DARS antisense RNA 1	lncRNA gene	no	ENST00000607985.5	1.012	0.226	0.667	0.001(14)	0.003(2)	0.055(959)	non tumor-specific	nAS	yes
LINC01007_LS001	chr7:101563087|101566486:-	LINC01007	long intergenic non-protein coding RNA 1007	lncRNA gene	no	ENST00000451953.1	0.519	0.427	3.224	0.009(83)	0.006(4)	0.037(651)	non tumor-specific	nAS	yes
UN_AP000696.1_UP_LS0018	chr21:36643010|36698909:-	AP000696.1	-	lncRNA gene	no	.	2.706	1.078	0.000	0.044(424)	0.138(97)	0(0)	non tumor-specific	nAS	no
AC078785.1_LS005	chr3:113062010|113161934:+	AC078785.1	-	lncRNA gene	no	ENST00000496389.5	0.083	0.023	0.739	0.004(38)	0.007(5)	0.028(484)	non tumor-specific	nAS	yes
UN_B3GALT5_LS0075	chr21:39646622|39663503:+	B3GALT5	beta-1,3-galactosyltransferase 5	protein coding gene	no	.	1.100	0.679	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_PDGFRB_LS0069	chr5:150134823|150135555:-	PDGFRB	platelet derived growth factor receptor beta	protein coding gene	yes	.	2.577	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;mutex_exons	no
UN_PMS1_LS0012	chr2:189817110|189818017:+	PMS1	PMS1 homolog 1, mismatch repair system component	protein coding gene	no	.	1.100	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
XAF1_LS027	chr17:6758625|6758910:+	XAF1	XIAP associated factor 1	protein coding gene	yes	.;.;.	0.407	0.105	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC002454.1_LS002	chr7:92836563|92916837:+	AC002454.1	-	lncRNA gene	no	ENST00000435695.1	0.106	0.160	0.735	0.156(1493)	0.152(107)	0.093(1624)	non tumor-specific	nAS	yes
GAB1_LS010	chr4:143415771|143433491:+	GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein coding gene	no	ENST00000262995.8;ENST00000262994.8;ENST00000514639.5;ENST00000515366.5;ENST00000505913.5;ENST00000509992.1	4.517	6.049	8.142	0.814(7798)	0.933(655)	0.949(16496)	non tumor-specific	exon_skip	yes
UN_MKI67_LS0261	chr10:128107510|128107877:+	MKI67	marker of proliferation Ki-67	protein coding gene	no	.	1.036	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DMXL1_LS028	chr5:119164676|119165183:+	DMXL1	Dmx like 1	protein coding gene	no	ENST00000539542.5;ENST00000311085.8	6.174	7.691	5.497	0.646(6194)	0.869(610)	0.91(15817)	non tumor-specific	exon_skip	yes
TTN_LS119	chr2:178621741|178621840:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5	8.418	8.219	1.828	0.003(27)	0.014(10)	0.194(3369)	non tumor-specific	nAS	yes
WIPF1_LS023	chr2:174630696|174634518:-	WIPF1	WAS/WASL interacting protein family member 1	protein coding gene	no	ENST00000488830.6	0.139	0.024	0.640	0.042(403)	0.044(31)	0.002(41)	non tumor-specific	alt_3prime;exon_skip	yes
F7_LS025	chr13:113115800|113116766:+	F7	coagulation factor VII	protein coding gene	no	ENST00000541084.5;ENST00000346342.7;ENST00000375581.3;ENST00000444337.1;ENST00000541084.5;ENST00000346342.7;ENST00000375581.3;ENST00000444337.1	7.507	10.084	0.890	0.144(1377)	0.135(95)	0.213(3705)	non tumor-specific	alt_5prime;exon_skip	yes
NCKAP1_LS035	chr2:183024995|183037992:-	NCKAP1	NCK associated protein 1	protein coding gene	no	ENST00000360982.2	1.247	0.336	3.853	0.16(1529)	0.177(124)	0.267(4643)	non tumor-specific	exon_skip	yes
COL9A2_LS014	chr1:40305768|40306143:-	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	ENST00000372748.7;ENST00000482722.5	22.931	15.077	9.262	0.839(8043)	0.835(586)	0.907(15772)	non tumor-specific	intron_retention	yes
RPGRIP1_LS004	chr14:21302584|21303412:+	RPGRIP1	RPGR interacting protein 1	protein coding gene	no	ENST00000556336.5;ENST00000557771.5	0.155	0.000	0.716	0(3)	0(0)	0.004(67)	non tumor-specific	nAS	yes
UN_SERPINB11_LS0004	chr18:63657366|63657392:+	SERPINB11	serpin family B member 11	protein coding gene	no	.	0.738	0.847	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FAM160B2_LS0012	chr8:22094518|22094596:+	FAM160B2	family with sequence similarity 160 member B2	protein coding gene	no	.	2.103	0.174	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC107973.1_LS002	chr11:29804601|29881482:+	AC107973.1	-	lncRNA gene	no	ENST00000530249.1	9.445	0.000	0.770	0(3)	0(0)	0.001(16)	non tumor-specific	nAS	yes
UN_AC008764.1_LS0031	chr19:16550499|16552611:+	AC008764.1	-	protein coding gene	no	.	0.928	0.769	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SPINT1_LS0022	chr15:40844754|40844890:-	SPINT1	serine peptidase inhibitor, Kunitz type 1	protein coding gene	no	.	4.942	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
YWHAQ_LS006	chr2:9591515|9630159:-	YWHAQ	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein coding gene	yes	ENST00000381844.8;ENST00000238081.7;ENST00000446619.1	335.761	193.142	237.305	0.997(9556)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_SPG7_LS0004	chr16:89491386|89498810:+	SPG7	SPG7 matrix AAA peptidase subunit, paraplegin	protein coding gene	no	.	0.295	0.002	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
NRP2_LS014	chr2:205740663|205743203:+	NRP2	neuropilin 2	protein coding gene	no	ENST00000360409.7;ENST00000417189.5;ENST00000357118.8;ENST00000357785.9;ENST00000272849.7;ENST00000412873.2;ENST00000478054.1	10.442	6.941	9.756	0.887(8503)	0.946(664)	0.91(15820)	non tumor-specific	alt_5prime;intron_retention	yes
C7_LS015	chr5:40962172|40964741:+	C7	C-X-C motif chemokine ligand 10	protein coding gene	no	ENST00000313164.9	26.062	131.094	97.000	0.626(5997)	0.977(686)	0.938(16298)	non tumor-specific	exon_skip	yes
UN_RPS6P12_UP_LS0015	chr9:83025921|83118182:-	RPS6P12	ribosomal protein S6 pseudogene 12	pseudogene	no	.	1.857	1.062	0.000	0.013(125)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_AL022311.1_UP_LS0002	chr22:37802878|37849437:+	AL022311.1	-	lncRNA gene	no	.	0.707	0.280	0.000	0.004(42)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC245452.1_LS0002	chr22:21955591|21956196:-	AC245452.1	-	lncRNA gene	no	.	0.577	1.916	0.000	0.01(94)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_PGGT1B_LS0004	chr5:115212303|115212420:-	PGGT1B	protein geranylgeranyltransferase type I subunit beta	protein coding gene	no	.	1.507	0.610	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
REC8_LS020	chr14:24179906|24180010:+	REC8	REC8 meiotic recombination protein	protein coding gene	no	ENST00000620473.4;ENST00000611366.4;ENST00000619469.4;ENST00000558381.1	35.326	7.923	20.084	0.944(9046)	0.962(675)	0.976(16972)	non tumor-specific	alt_3prime;intron_retention	yes
UN_MARCH10_LS0025	chr17:62725746|62736086:+	MARCH10	membrane associated ring-CH-type finger 10	protein coding gene	no	.	1.141	0.090	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RANBP9_LS012	chr6:13657276|13658780:-	RANBP9	RAN binding protein 9	protein coding gene	yes	ENST00000011619.5	51.653	34.949	30.507	0.975(9343)	0.991(696)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
MYH2_LS025	chr17:10536606|10537233:-	MYH2	myosin heavy chain 2	protein coding gene	no	ENST00000532183.6;ENST00000245503.9;ENST00000397183.6;ENST00000622564.4	18.422	731.175	1.124	0.026(250)	0.071(50)	0.376(6532)	non tumor-specific	alt_3prime	yes
PARVB_LS014	chr22:44131627|44132894:+	PARVB	parvin beta	protein coding gene	no	ENST00000406477.7;ENST00000338758.11;ENST00000619710.4;ENST00000444029.5;ENST00000404989.1	95.677	36.868	52.063	0.988(9463)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_PCED1B_UP_LS0002	chr12:46970385|46970979:+	PCED1B	PC-esterase domain containing 1B	protein coding gene	no	.	2.063	0.238	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KNL1_LS0008	chr15:40619011|40628070:+	KNL1	kinetochore scaffold 1	protein coding gene	no	.	0.496	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RXRA_LS0051	chr9:134388584|134401632:+	RXRA	retinoid X receptor alpha	protein coding gene	no	.	1.100	0.151	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARNT2_LS020	chr15:80575110|80576866:+	ARNT2	aryl hydrocarbon receptor nuclear translocator 2	protein coding gene	no	ENST00000303329.8;ENST00000622346.4;ENST00000533983.5;ENST00000527771.5;ENST00000525505.1	24.840	30.908	5.510	0.729(6983)	0.848(595)	0.865(15039)	non tumor-specific	alt_3prime	yes
STRN3_LS022	chr14:30929311|30935163:-	STRN3	striatin 3	protein coding gene	no	ENST00000357479.9;ENST00000556577.1	4.497	2.597	2.600	0.859(8228)	0.922(647)	0.821(14279)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SPOCK2_LS001	chr10:72062905|72063025:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	ENST00000373109.6;ENST00000317376.8;ENST00000536168.2;ENST00000463279.6;ENST00000469121.5	110.335	86.187	10.619	0.934(8946)	0.953(669)	0.942(16381)	non tumor-specific	alt_5prime	yes
UN_AHNAK_LS1199	chr11:62528266|62530265:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	8.041	8.925	0.000	0.008(76)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_RNA5SP389_UP_LS0338	chr14:106627367|106639226:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	16.232	10.001	0.000	0.005(52)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_EXOC3_LS0026	chr5:458025|459371:+	EXOC3	exocyst complex component 3	protein coding gene	no	.	7.209	1.770	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PER3_LS0040	chr1:7835934|7836999:+	PER3	period circadian regulator 3	protein coding gene	no	.	3.604	0.337	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UTS2_LS003	chr1:7847882|7849640:-	UTS2	urotensin 2	protein coding gene	no	ENST00000377516.6;ENST00000361696.9;ENST00000054668.5	2.505	1.837	1.091	0.248(2374)	0.147(103)	0.202(3519)	non tumor-specific	exon_skip	yes
UN_TEAD3_LS0090	chr6:35486711|35488397:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	1.033	0.822	0.000	0.005(46)	0.013(9)	0(0)	non tumor-specific	nAS	no
TRAPPC3_LS012	chr1:36139819|36140069:-	TRAPPC3	trafficking protein particle complex 3	protein coding gene	no	ENST00000617904.4;ENST00000373166.7;ENST00000462715.1;ENST00000373163.5;ENST00000373162.5;ENST00000373159.1;ENST00000497251.1	139.805	83.442	86.771	0.999(9572)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM79_LS0035	chr1:156290360|156291403:-	TMEM79	transmembrane protein 79	protein coding gene	no	.	3.865	0.702	0.000	0.062(593)	0.041(29)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MERTK_LS0005	chr2:111899137|111929120:+	MERTK	MER proto-oncogene, tyrosine kinase	protein coding gene	yes	.	1.306	0.457	0.000	0.054(515)	0.046(32)	0(0)	non tumor-specific	nAS	no
UN_AC060766.2_UP_LS0003	chr17:35313309|35321735:+	AC060766.2	-	pseudogene	no	.	1.003	0.317	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	nAS	no
SNAP91_LS034	chr6:83617039|83623301:-	SNAP91	synaptosome associated protein 91	protein coding gene	no	ENST00000521485.5;ENST00000369694.6;ENST00000195649.10;ENST00000439399.6;ENST00000521743.5;ENST00000520302.5;ENST00000518312.5;ENST00000521616.5;ENST00000521931.5	7.775	10.854	2.343	0.162(1550)	0.111(78)	0.449(7808)	non tumor-specific	exon_skip	yes
AC004982.2_LS004	chr7:7555189|7565914:-	AC004982.2	-	lncRNA gene	no	ENST00000609497.5	3.868	3.631	8.730	0.859(8228)	0.899(631)	0.956(16620)	non tumor-specific	nAS	yes
UN_ATP8B1_LS0072	chr18:57735592|57763779:+	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	.	1.873	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SIAH3_LS0004	chr13:45825118|45825540:-	SIAH3	siah E3 ubiquitin protein ligase family member 3	protein coding gene	no	.	1.370	0.795	0.000	0.001(14)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_BX005132.1_UP_LS0002	chr1:4653802|4711900:+	BX005132.1	-	lncRNA gene	no	.	1.670	0.461	0.000	0.001(13)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC008663.2_LS002	chr5:173580375|173583278:+	AC008663.2	-	lncRNA gene	no	ENST00000517299.1	0.024	0.000	0.700	0(4)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_GTF2I_LS0008	chr7:74658068|74674095:+	GTF2I	general transcription factor IIi	protein coding gene	no	.	1.746	0.547	0.000	0.053(511)	0.04(28)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
POTEM_LS014	chr14:18997159|18998667:+	POTEM	POTE ankyrin domain family member M	protein coding gene	no	ENST00000552966.5;ENST00000547889.5;ENST00000616847.1	3.032	0.332	1.120	0.032(303)	0.047(33)	0(8)	non tumor-specific	alt_3prime	yes
UN_TMEM214_LS0071	chr2:27040844|27040971:-	TMEM214	transmembrane protein 214	protein coding gene	no	.	2.876	0.493	0.000	0.009(84)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AC011473.4_LS0011	chr19:51000046|51000069:+	AC011473.4	-	protein coding gene	no	.	1.185	0.333	0.000	0.004(43)	0.009(6)	0(0)	non tumor-specific	nAS	no
LINC00939_LS005	chr12:125967342|125969811:-	LINC00939	long intergenic non-protein coding RNA 939	lncRNA gene	no	ENST00000545784.5;ENST00000507313.5;ENST00000502479.1	2.907	0.081	0.825	0.022(207)	0.003(2)	0.07(1212)	non tumor-specific	nAS	yes
UN_TPTE2P6_LS0005	chr13:24513033|24517747:+	TPTE2P6	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6	pseudogene	no	.	0.671	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LILRP1_LS0001	chr19:54696639|54696793:+	LILRP1	leukocyte immunoglobulin-like receptor pseudogene 1	pseudogene	no	.	27.080	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
TRIO_LS028	chr5:14389398|14390231:+	TRIO	trio Rho guanine nucleotide exchange factor	protein coding gene	yes	ENST00000344204.8;ENST00000512070.6;ENST00000509967.6;ENST00000513206.5;ENST00000515144.5	18.866	10.391	13.763	0.918(8794)	0.932(654)	0.963(16741)	non tumor-specific	mutex_exons	yes
UN_SRGAP3_LS0040	chr3:9250494|9252008:+	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	.	2.649	0.730	0.000	0.004(40)	0.011(8)	0(0)	non tumor-specific	nAS	no
RBM39_LS001	chr20:35704581|35704668:-	RBM39	RNA binding motif protein 39	protein coding gene	no	ENST00000639702.1;ENST00000463004.5;ENST00000461283.5;ENST00000253363.10;ENST00000361162.10;ENST00000338163.10;ENST00000403542.6;ENST00000528062.7;ENST00000495293.5;ENST00000476806.5;ENST00000444878.5;ENST00000429968.5;ENST00000492779.5;ENST00000496183.5;ENST00000482563.1;ENST00000490354.5;ENST00000465158.5	224.113	97.701	318.158	0.964(9237)	0.98(688)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TTLL5_LS059	chr14:75906677|75954424:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000554972.1	1.504	0.818	1.005	0.732(7011)	0.651(457)	0.486(8453)	non tumor-specific	nAS	yes
UN_AC112229.3_LS0019	chr2:110434789|110436614:-	AC112229.3	-	protein coding gene	no	.	1.149	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_YWHAE_LS0006	chr17:1344691|1344826:+	YWHAE	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein coding gene	no	.	12.722	0.794	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC068672.3_LS002	chr8:31343815|31346290:+	AC068672.3	-	lncRNA gene	no	ENST00000505166.2	0.222	0.054	0.671	0(2)	0.001(1)	0(6)	non tumor-specific	nAS	yes
UN_AL359710.1_UP_LS0002	chr9:99849988|99894880:-	AL359710.1	-	lncRNA gene	no	.	2.165	0.517	0.000	0.015(139)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_MYO19_LS0012	chr17:36498577|36499075:-	MYO19	myosin XIX	protein coding gene	no	.	2.077	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ELK4_LS0010	chr1:205610086|205610110:+	ELK4	ETS transcription factor ELK4	protein coding gene	no	.	2.528	0.410	0.000	0.023(217)	0.019(13)	0(0)	non tumor-specific	nAS	no
PXYLP1_LS021	chr3:141260254|141274460:+	PXYLP1	2-phosphoxylose phosphatase 1	protein coding gene	no	.;.	1.267	0.034	0.000	0.009(87)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SLC17A7_LS003	chr19:49431448|49432519:-	SLC17A7	solute carrier family 17 member 7	protein coding gene	no	ENST00000221485.7;ENST00000600601.5;ENST00000600672.5	4.067	43.208	2.821	0.166(1595)	0.363(255)	0.77(13379)	non tumor-specific	exon_skip	yes
UN_HLA-H_UP_LS0003	chr6:29724448|29829418:+	HLA-H	major histocompatibility complex, class I, H (pseudogene)	pseudogene	no	.	2.240	0.245	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
RAB8A_LS002	chr19:16112025|16118226:+	RAB8A	RAB8A, member RAS oncogene family	protein coding gene	yes	ENST00000300935.7;ENST00000590899.5;ENST00000587156.5;ENST00000586682.1;ENST00000589697.1	47.942	31.135	39.603	0.989(9471)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_RGL4_LS0018	chr22:23694607|23695173:-	RGL4	ral guanine nucleotide dissociation stimulator like 4	protein coding gene	yes	.	1.543	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9orf3_LS0074	chr9:95004575|95005158:+	C9orf3	aminopeptidase O (putative)	protein coding gene	no	.	0.864	0.149	0.000	0.008(79)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
KRT13_LS028	chr17:41505339|41505376:-	KRT13	keratin 13	protein coding gene	no	.;.	187.882	16.901	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_ALOX12P2_LS0025	chr17:6899985|6950059:+	ALOX12P2	arachidonate 12-lipoxygenase pseudogene 2	pseudogene	no	.	2.336	0.487	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP9B_LS021	chr18:79193263|79206937:+	ATP9B	ATPase phospholipid transporting 9B (putative)	protein coding gene	no	ENST00000586366.5;ENST00000426216.6;ENST00000307671.12;ENST00000458297.3;ENST00000490210.6	10.544	9.828	8.733	0.844(8087)	0.957(672)	0.97(16863)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JAK2_LS0040	chr9:5080380|5080512:+	JAK2	Janus kinase 2	protein coding gene	yes	.	2.882	0.005	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_ZNF273_LS0036	chr7:64903419|64927654:+	ZNF273	zinc finger protein 273	protein coding gene	no	.	1.786	0.055	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NDUFV2-AS1_LS0001	chr18:9121456|9136364:-	NDUFV2-AS1	NDUFV2 antisense RNA 1	lncRNA gene	no	.	2.704	0.371	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SGPL1_LS013	chr10:70859499|70868345:+	SGPL1	sphingosine-1-phosphate lyase 1	protein coding gene	no	ENST00000373202.7;ENST00000611290.4;ENST00000613857.4	37.912	24.991	11.586	0.974(9328)	0.989(694)	0.973(16916)	non tumor-specific	nAS	yes
UN_NRON_UP_LS0007	chr9:126529859|126533976:-	NRON	non-coding repressor of NFAT	small non-coding RNA gene	no	.	5.717	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HECW2_LS021	chr2:196317369|196318552:-	HECW2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000260983.8;ENST00000647236.1;ENST00000644030.1;ENST00000644421.1;ENST00000644256.1;ENST00000644978.1;ENST00000645770.1	2.997	2.421	1.903	0.411(3938)	0.577(405)	0.688(11953)	non tumor-specific	nAS	yes
UN_ERICH1_LS0073	chr8:668792|672022:-	ERICH1	glutamate rich 1	protein coding gene	no	.	2.433	0.116	0.000	0.012(113)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PAN3_LS004	chr13:28177935|28197185:+	PAN3	poly(A) specific ribonuclease subunit PAN3	protein coding gene	no	ENST00000503791.5;ENST00000380958.7	10.424	6.650	4.755	0.816(7821)	0.902(633)	0.921(16006)	non tumor-specific	exon_skip;mutex_exons	yes
UN_INSR_UP_LS0004	chr19:7344062|7390576:-	INSR	insulin receptor	protein coding gene	no	.	1.344	0.344	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
NPR2_LS006	chr9:35800157|35800709:+	NPR2	NPR2 like, GATOR1 complex subunit	protein coding gene	no	.;.	1.064	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CDH10_LS002	chr5:24491827|24492817:-	CDH10	cadherin 10	protein coding gene	no	ENST00000264463.8;ENST00000502921.5;ENST00000510477.5;ENST00000503958.1	4.842	2.787	5.038	0.174(1665)	0.197(138)	0.3(5206)	non tumor-specific	nAS	yes
RAD52_LS008	chr12:916535|916639:-	RAD52	RAD52 homolog, DNA repair protein	protein coding gene	no	ENST00000461568.5;ENST00000536177.5	0.399	0.189	1.790	0.454(4350)	0.407(286)	0.768(13350)	non tumor-specific	alt_3prime;intron_retention	yes
ZNF567_LS006	chr19:36687686|36689401:+	ZNF567	zinc finger protein 567	protein coding gene	no	ENST00000536254.6;ENST00000536254.6	0.338	0.221	0.681	0.128(1230)	0.125(88)	0.061(1068)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_C9orf3_LS0004	chr9:94733249|94759649:+	C9orf3	aminopeptidase O (putative)	protein coding gene	no	.	1.436	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
AHSA1_LS014	chr14:77468508|77468590:+	AHSA1	activator of HSP90 ATPase activity 1	protein coding gene	no	ENST00000535854.6;ENST00000556369.1	0.466	2.800	1.916	0.744(7124)	0.828(581)	0.809(14057)	non tumor-specific	nAS	yes
UN_AL450345.1_UP_LS0009	chr6:163927163|164057048:+	AL450345.1	-	lncRNA gene	no	.	2.182	1.962	0.000	0.019(182)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SFRP1_UP_LS0008	chr8:41510380|41511521:-	SFRP1	secreted frizzled related protein 1	protein coding gene	yes	.	1.869	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PTCH1_LS021	chr9:95477702|95478055:-	PTCH1	patched 1	protein coding gene	yes	ENST00000331920.10;ENST00000418258.5;ENST00000421141.5;ENST00000437951.5;ENST00000375290.6;ENST00000430669.6;ENST00000429896.6;ENST00000375274.6	5.662	4.263	3.680	0.657(6299)	0.852(598)	0.876(15231)	non tumor-specific	exon_skip	yes
MYO15A_LS053	chr17:18157900|18161317:+	MYO15A	myosin XVA	protein coding gene	no	ENST00000445289.6	0.399	0.000	0.704	0.001(5)	0(0)	0.02(348)	non tumor-specific	nAS	yes
AF127577.4_LS003	chr21:14857708|15014344:-	AF127577.4	-	lncRNA gene	no	ENST00000432230.6	0.611	0.384	0.808	0.392(3757)	0.483(339)	0.358(6219)	non tumor-specific	nAS	yes
CEP162_LS011	chr6:84171718|84174048:-	CEP162	centrosomal protein 162	protein coding gene	no	ENST00000461137.5;ENST00000257766.8;ENST00000403245.7;ENST00000617909.1	4.480	2.914	4.012	0.775(7423)	0.862(605)	0.924(16060)	non tumor-specific	exon_skip	yes
UN_TENM3_LS0013	chr4:182324252|182600924:+	TENM3	teneurin transmembrane protein 3	protein coding gene	no	.	1.119	0.234	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
MED24_LS064	chr17:40053657|40056549:-	MED24	mediator complex subunit 24	protein coding gene	no	ENST00000582023.5	0.011	0.047	0.663	0.165(1584)	0.131(92)	0.011(198)	non tumor-specific	alt_3prime	yes
UN_DRD4_LS0003	chr11:640005|640102:-	DRD4	dopamine receptor D4	protein coding gene	no	.	2.322	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EEF1D_LS015	chr8:143581154|143581286:-	EEF1D	eukaryotic translation elongation factor 1 delta	protein coding gene	yes	ENST00000526838.5;ENST00000531621.5;ENST00000529516.5;ENST00000534232.5	0.453	1.164	9.975	0.952(9121)	0.939(659)	0.975(16940)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PSIP1_LS0035	chr9:15506633|15510117:-	PSIP1	PC4 and SFRS1 interacting protein 1	protein coding gene	yes	.	4.018	0.328	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_RNU1-61P_UP_LS0047	chr6:32554960|32581828:-	RNU1-61P	RNA, U1 small nuclear 61, pseudogene	small non-coding RNA gene	no	.	161.930	25.486	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_STAMBP_LS0025	chr2:73862945|73870143:+	STAMBP	STAM binding protein	protein coding gene	no	.	6.878	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PHF13_LS002	chr1:6614105|6622192:+	PHF13	PHD finger protein 13	protein coding gene	no	ENST00000495385.1	0.134	0.053	0.621	0.35(3358)	0.329(231)	0.003(56)	non tumor-specific	nAS	yes
BNC2_LS017	chr9:16583085|16727797:-	BNC2	basonuclin 2	protein coding gene	no	ENST00000380672.8;ENST00000484726.5;ENST00000418777.5;ENST00000545497.5;ENST00000380666.6;ENST00000603713.5;ENST00000486514.5;ENST00000603313.5;ENST00000468187.6;ENST00000613349.4;ENST00000617779.1	2.253	1.897	2.245	0.506(4844)	0.768(539)	0.65(11299)	non tumor-specific	exon_skip	yes
UN_NABP2_LS0004	chr12:56223392|56224204:-	NABP2	nucleic acid binding protein 2	protein coding gene	no	.	1.010	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SON_LS0216	chr21:33566461|33571916:-	SON	SON DNA and RNA binding protein	protein coding gene	no	.	0.515	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	exon_skip	no
TUBA3E_LS001	chr2:130192127|130193786:-	TUBA3E	tubulin alpha 3e	protein coding gene	no	ENST00000312988.8	12.093	5.795	1.219	0.098(942)	0.084(59)	0.166(2891)	non tumor-specific	nAS	yes
UN_PASK_LS0010	chr2:241108898|241112240:-	PASK	PAS domain containing serine/threonine kinase	protein coding gene	no	.	4.598	0.967	0.000	0.032(305)	0.023(16)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ARF1_LS0016	chr1:228097147|228097855:-	ARF1	ADP ribosylation factor 1	protein coding gene	yes	.	0.164	0.170	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMED9_LS0022	chr5:177595416|177595812:-	TMED9	transmembrane p24 trafficking protein 9	protein coding gene	no	.	1.117	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NAPA_LS0052	chr19:47493638|47495028:+	NAPA	napsin A aspartic peptidase	protein coding gene	no	.	3.513	1.070	0.000	0.058(551)	0.036(25)	0(0)	non tumor-specific	nAS	no
JTB_LS002	chr1:153975905|153976693:-	JTB	jumping translocation breakpoint	protein coding gene	no	ENST00000271843.8;ENST00000356648.5;ENST00000368589.5;ENST00000428469.1;ENST00000461365.1;ENST00000471173.1	559.177	289.550	318.633	0.999(9571)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
VCX3A_LS005	chrX:6533888|6533919:-	VCX3A	variable charge X-linked 3A	protein coding gene	no	.;.	40.110	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL591485.1_LS011	chr6:8438031|8779887:+	AL591485.1	-	no	no	ENST00000643136.1;ENST00000647135.1	0.900	0.166	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	nAS	yes
NOL9_LS013	chr1:6550615|6554107:-	NOL9	nucleolar protein 9	protein coding gene	no	ENST00000377705.5	4.232	2.586	3.805	0.885(8482)	0.937(658)	0.93(16164)	non tumor-specific	exon_skip	yes
UN_DNAJB5_LS0007	chr9:34992966|34996984:-	DNAJB5	DnaJ heat shock protein family (Hsp40) member B5	protein coding gene	no	.	3.159	1.283	0.000	0.003(33)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_ZNF324B_LS0013	chr19:58456121|58456206:+	ZNF324B	zinc finger protein 324B	protein coding gene	no	.	3.513	0.199	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
AGAP3_LS001	chr7:151086009|151116793:+	AGAP3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein coding gene	no	ENST00000463381.5	0.288	0.050	0.700	0.031(298)	0.021(15)	0.028(483)	non tumor-specific	alt_5prime	yes
EIF4G3_LS026	chr1:20904971|20941259:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000374933.3	0.180	0.354	1.631	0.712(6824)	0.738(518)	0.748(12997)	non tumor-specific	alt_5prime;exon_skip	yes
AC134980.3_LS005	chr15:22059409|22059632:+	AC134980.3	-	protein coding gene	no	ENST00000639059.1	0.561	0.000	0.685	0.011(108)	0(0)	0.007(126)	non tumor-specific	nAS	yes
PWP2_LS024	chr21:44126965|44127932:+	PWP2	PWP2 small subunit processome component	protein coding gene	no	ENST00000291576.11;ENST00000291576.11;ENST00000291576.11	21.125	10.784	1.250	0.982(9406)	0.99(695)	0.348(6045)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_POLR2J4_LS0115	chr7:44014779|44014978:-	POLR2J4	RNA polymerase II subunit J4, pseudogene	pseudogene	no	.	2.618	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS1492	chr14:105743081|105771252:+	AC246787.2	-	lncRNA gene	no	.	38.029	1.922	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SNX15_LS0003	chr11:65029283|65032168:+	SNX15	sorting nexin 15	protein coding gene	no	.	1.033	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RPP21_LS007	chr6:30345398|30346432:+	RPP21	ribonuclease P/MRP subunit p21	protein coding gene	no	ENST00000489124.5;ENST00000489124.5	0.280	0.312	0.758	0.886(8493)	0.808(567)	0.189(3288)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CFAP54_LS015	chr12:96540245|96540837:+	CFAP54	cilia and flagella associated protein 54	protein coding gene	no	ENST00000554108.6	2.307	0.054	0.701	0.001(12)	0.001(1)	0.021(363)	non tumor-specific	nAS	yes
UN_ZFP62_LS0058	chr5:180860654|180860944:-	ZFP62	ZFP62 zinc finger protein	protein coding gene	no	.	0.715	0.086	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PTPRQ_LS041	chr12:80549734|80588129:+	PTPRQ	protein tyrosine phosphatase receptor type R	protein coding gene	no	ENST00000616559.4;ENST00000614701.5;ENST00000644991.1	5.225	1.739	1.424	0.02(195)	0.15(105)	0.338(5870)	non tumor-specific	exon_skip	yes
CD96_LS005	chr3:111542309|111545046:+	CD96	CD96 molecule	protein coding gene	no	ENST00000352690.8;ENST00000283285.9;ENST00000438817.6;ENST00000488054.1;ENST00000494798.1	8.685	1.998	1.900	0.59(5652)	0.688(483)	0.575(9991)	non tumor-specific	nAS	yes
API5_LS014	chr11:43326611|43327789:+	API5	apoptosis inhibitor 5	protein coding gene	no	ENST00000455725.6;ENST00000531273.5;ENST00000420461.6;ENST00000378852.7;ENST00000534600.5	72.066	58.448	37.766	0.978(9374)	0.994(698)	0.978(16998)	non tumor-specific	exon_skip;intron_retention	yes
PAH_LS021	chr12:102855332|102866596:-	PAH	phenylalanine hydroxylase	protein coding gene	no	ENST00000553106.5;ENST00000307000.7;ENST00000549111.5	26.783	101.483	2.523	0.275(2635)	0.37(260)	0.291(5065)	non tumor-specific	exon_skip	yes
UN_ZNF554_LS0003	chr19:2823112|2823511:+	ZNF554	zinc finger protein 554	protein coding gene	no	.	1.594	0.550	0.000	0.125(1198)	0.14(98)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_POMZP3_LS0027	chr7:76621159|76625921:+	POMZP3	POM121 and ZP3 fusion	protein coding gene	no	.	2.835	0.005	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PCNX3_LS0111	chr11:65636700|65636789:+	PCNX3	pecanex 3	protein coding gene	no	.	21.327	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SSH1_LS0019	chr12:108789244|108792421:-	SSH1	slingshot protein phosphatase 1	protein coding gene	no	.	1.452	0.010	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ARHGAP1_LS0048	chr11:46677736|46690162:+	ARHGAP1	Rho GTPase activating protein 1	protein coding gene	no	.	11.890	3.735	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RTEL1-TNFRSF6B_LS0061	chr20:63694525|63694741:+	RTEL1-TNFRSF6B	RTEL1-TNFRSF6B readthrough (NMD candidate)	protein coding gene	no	.	4.542	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CSPG5_LS0026	chr3:47577928|47579230:-	CSPG5	chondroitin sulfate proteoglycan 5	protein coding gene	no	.	1.193	0.051	0.000	0.021(205)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SCFD1_LS012	chr14:30634037|30634922:+	SCFD1	sec1 family domain containing 1	protein coding gene	no	ENST00000557713.5	0.002	0.021	0.630	0.563(5395)	0.701(492)	0.042(735)	non tumor-specific	alt_3prime;exon_skip	yes
ISLR_LS002	chr15:74174250|74174851:+	ISLR	immunoglobulin superfamily containing leucine rich repeat	protein coding gene	no	ENST00000559510.1	0.022	0.030	0.630	0.463(4440)	0.664(466)	0.033(573)	non tumor-specific	nAS	yes
UN_TNFRSF14-AS1_LS0004	chr1:2550274|2555681:-	TNFRSF14-AS1	TNFRSF14 antisense RNA 1	lncRNA gene	no	.	1.069	0.139	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
C15orf39_LS006	chr15:75208824|75210749:+	C15orf39	chromosome 15 open reading frame 39	protein coding gene	no	ENST00000360639.6;ENST00000394987.4	19.536	9.658	14.731	0.953(9131)	0.963(676)	0.963(16746)	non tumor-specific	alt_5prime	yes
UN_IGHG3_LS0070	chr14:105770149|105770481:-	IGHG3	immunoglobulin heavy constant gamma 3 (G3m marker)	no	no	.	145.053	34.945	0.000	0.035(336)	0.03(21)	0(0)	non tumor-specific	nAS	no
PCAT18_LS001	chr18:26689971|26703392:-	PCAT18	prostate cancer associated transcript 18	lncRNA gene	no	ENST00000579458.1	1.939	1.024	2.084	0.259(2485)	0.551(387)	0.176(3063)	non tumor-specific	nAS	yes
UN_RLF_LS0018	chr1:40202614|40231517:+	RLF	RLF zinc finger	protein coding gene	no	.	1.252	0.182	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SRRM2_LS0371	chr16:2767270|2767517:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	3.619	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDB2_LS0016	chr11:47216472|47216929:+	DDB2	damage specific DNA binding protein 2	protein coding gene	yes	.	3.856	0.327	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AGPAT3_LS0032	chr21:43940331|43959634:+	AGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein coding gene	no	.	5.864	3.256	0.000	0.018(171)	0.037(26)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PROCA1_LS0007	chr17:28706763|28707838:-	PROCA1	protein interacting with cyclin A1	protein coding gene	no	.	0.719	0.128	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC02453_LS0008	chr12:98493484|98498889:-	LINC02453	long intergenic non-protein coding RNA 2453	lncRNA gene	no	.	6.664	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RLN2_UP_LS0015	chr9:5315803|5326223:-	RLN2	relaxin 2	protein coding gene	no	.	2.540	0.362	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC005301.1_UP_LS0001	chr22:16704106|16717918:-	AC005301.1	-	lncRNA gene	no	.	0.764	0.248	0.000	0.013(123)	0.024(17)	0(0)	non tumor-specific	nAS	no
OTUD5_LS017	chrX:48944283|48956977:-	OTUD5	OTU deubiquitinase 5	protein coding gene	no	ENST00000396743.7;ENST00000455452.5;ENST00000156084.8;ENST00000376488.7;ENST00000610466.4	28.758	18.591	51.560	0.917(8786)	0.93(653)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SUGT1P4-STRA6LP_LS001	chr9:97238567|97246096:+	SUGT1P4-STRA6LP	SUGT1P4-STRA6LP readthrough	lncRNA gene	no	ENST00000527128.5;ENST00000375204.2	1.339	0.867	3.047	0.333(3193)	0.46(323)	0.869(15110)	non tumor-specific	nAS	yes
ZPBP2_LS003	chr17:39868406|39872270:+	ZPBP2	zona pellucida binding protein 2	protein coding gene	no	ENST00000583811.5	0.213	0.000	0.410	0.001(14)	0(0)	0.001(22)	non tumor-specific	nAS	yes
UN_NFIC_LS0139	chr19:3465651|3465728:-	NFIC	nuclear factor I C	protein coding gene	no	.	5.430	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALDH7A1_LS0011	chr5:126570009|126570782:-	ALDH7A1	aldehyde dehydrogenase 7 family member A1	protein coding gene	no	.	3.373	0.033	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZNF862_LS008	chr7:149846255|149847735:+	ZNF862	zinc finger protein 862	protein coding gene	no	ENST00000223210.4;ENST00000460379.1	10.245	5.873	11.270	0.877(8401)	0.917(644)	0.976(16965)	non tumor-specific	nAS	yes
XRN2_LS016	chr20:21340852|21344090:+	XRN2	5'-3' exoribonuclease 2	protein coding gene	no	ENST00000377191.4	134.696	72.357	58.450	0.989(9476)	0.994(698)	0.979(17019)	non tumor-specific	nAS	yes
AC068481.1_LS001	chr2:7062914|7076882:-	AC068481.1	-	lncRNA gene	no	ENST00000415520.5	2.026	0.000	0.662	0(3)	0(0)	0.002(43)	non tumor-specific	nAS	yes
UN_FAM3A_LS0017	chrX:154506842|154506870:-	FAM3A	FAM3 metabolism regulating signaling molecule A	protein coding gene	no	.	19.188	0.559	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_AC013470.2_LS0007	chr7:12480987|12491489:-	AC013470.2	-	protein coding gene	no	.	1.888	0.609	0.000	0.006(55)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_SAMD12_LS0035	chr8:118419662|118419791:+	SAMD12	sterile alpha motif domain containing 12	protein coding gene	no	.	1.879	0.078	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
SRD5A3-AS1_LS002	chr4:55365661|55366756:-	SRD5A3-AS1	SRD5A3 antisense RNA 1	lncRNA gene	no	ENST00000433175.6	0.374	0.263	0.716	0.001(8)	0.001(1)	0.047(815)	non tumor-specific	nAS	yes
ABCA2_LS021	chr9:137012376|137012485:-	ABCA2	ATP binding cassette subfamily A member 2	protein coding gene	no	ENST00000341511.10;ENST00000371605.7;ENST00000265662.9;ENST00000614293.4;ENST00000479446.5;ENST00000459850.5;ENST00000487109.5;ENST00000431584.2;ENST00000488535.2	24.253	16.706	29.995	0.976(9349)	0.99(695)	0.977(16988)	non tumor-specific	nAS	yes
CRLF1_LS014	chr19:18598901|18599565:-	CRLF1	cytokine receptor like factor 1	protein coding gene	no	ENST00000392386.7	14.633	5.835	28.218	0.602(5772)	0.758(532)	0.919(15970)	non tumor-specific	exon_skip	yes
DLG2_LS044	chr11:84272300|84273151:-	DLG2	membrane palmitoylated protein 2	protein coding gene	no	ENST00000529401.5	0.194	0.000	0.948	0.002(15)	0(0)	0.025(436)	non tumor-specific	nAS	yes
ATRX_LS055	chrX:77698629|77699510:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000624193.1	0.254	0.130	0.623	0.105(1010)	0.164(115)	0.061(1063)	non tumor-specific	exon_skip	yes
CCDC196_LS007	chr14:66490819|66491607:+	CCDC196	coiled-coil domain containing 196	protein coding gene	no	ENST00000359454.10	0.794	0.000	0.691	0.004(43)	0(0)	0.017(289)	non tumor-specific	nAS	yes
UN_CRLF3_LS0080	chr17:30804108|30824527:-	CRLF3	cytokine receptor like factor 3	protein coding gene	no	.	1.488	0.674	0.000	0.065(626)	0.066(46)	0(0)	non tumor-specific	alt_5prime	no
UN_PUS10_LS0017	chr2:61011905|61013301:-	PUS10	pseudouridine synthase 10	protein coding gene	no	.	0.581	0.032	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PP12613_UP_LS0011	chr4:121450111|121459736:+	PP12613	-	lncRNA gene	no	.	2.607	0.798	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MUC3A_LS0155	chr7:100958576|100958883:-	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	2.006	8.451	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_XPO1_LS0020	chr2:61492250|61492325:-	XPO1	exportin 1	protein coding gene	no	.	13.978	1.782	0.000	0.03(283)	0.024(17)	0(0)	non tumor-specific	alt_3prime	no
ARHGAP1_LS006	chr11:46680563|46680640:-	ARHGAP1	Rho GTPase activating protein 1	protein coding gene	no	ENST00000311956.8;ENST00000526423.1;ENST00000528837.5	89.099	64.342	73.808	0.988(9468)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_NDUFB8P2_UP_LS0003	chr17:59848457|59848667:+	NDUFB8P2	NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2	pseudogene	no	.	1.644	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COL6A6_UP_LS0005	chr3:130517397|130560334:+	COL6A6	collagen type VI alpha 6 chain	protein coding gene	no	.	1.099	0.421	0.000	0.011(101)	0.132(93)	0(0)	non tumor-specific	nAS	no
UN_AC009690.1_LS0011	chr15:72304794|72313664:-	AC009690.1	-	protein coding gene	no	.	1.531	0.023	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATAD3A_LS023	chr1:1527862|1529223:+	ATAD3A	ATPase family AAA domain containing 3A	protein coding gene	no	ENST00000378756.7;ENST00000378755.9;ENST00000339113.8;ENST00000536055.5;ENST00000400830.3;ENST00000378756.7;ENST00000378755.9;ENST00000339113.8;ENST00000536055.5;ENST00000400830.3	90.039	33.488	32.826	0.998(9560)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
KCNN2_LS018	chr5:114493472|114495895:+	KCNN2	potassium calcium-activated channel subfamily N member 2	protein coding gene	no	ENST00000512097.8;ENST00000610748.4;ENST00000264773.7;ENST00000631899.2;ENST00000507750.5;ENST00000503706.5;ENST00000506812.2;ENST00000632892.1	11.867	17.346	3.973	0.668(6402)	0.809(568)	0.763(13270)	non tumor-specific	nAS	yes
UN_ATRNL1_LS0023	chr10:115858995|115944658:+	ATRNL1	attractin like 1	protein coding gene	no	.	1.997	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LARGE1_LS014	chr22:33432265|33564848:-	LARGE1	LARGE xylosyl- and glucuronyltransferase 1	protein coding gene	no	ENST00000354992.6;ENST00000397394.6;ENST00000402320.5;ENST00000421768.1	16.565	22.204	19.096	0.888(8506)	0.983(690)	0.958(16654)	non tumor-specific	exon_skip	yes
UN_PIK3R6_LS0016	chr17:8827368|8828112:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	.	1.604	0.034	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GMPS_LS002	chr3:155870897|155893518:+	GMPS	guanine monophosphate synthase	protein coding gene	no	ENST00000496455.6	19.822	8.952	18.080	0.971(9306)	0.984(691)	0.975(16949)	non tumor-specific	exon_skip	yes
MYCNOS_LS003	chr2:15938725|15940974:-	MYCNOS	MYCN opposite strand	lncRNA gene	no	ENST00000641263.1	0.622	0.024	0.000	0.021(200)	0.001(1)	0(0)	non tumor-specific	nAS	yes
EYA1_LS032	chr8:71531261|71535744:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000645793.1;ENST00000519927.5;ENST00000518177.2	1.278	0.012	1.001	0.015(142)	0.001(1)	0.088(1535)	non tumor-specific	exon_skip	yes
PLEKHJ1_LS008	chr19:2234061|2235762:-	PLEKHJ1	pleckstrin homology domain containing J1	protein coding gene	no	ENST00000591099.6;ENST00000586608.3;ENST00000591099.6;ENST00000586608.3	0.152	0.350	3.970	0.887(8500)	0.872(612)	0.954(16577)	non tumor-specific	alt_5prime;exon_skip	yes
HERC2P10_LS005	chr15:30823771|30824656:+	HERC2P10	hect domain and RLD 2 pseudogene 10	pseudogene	no	ENST00000570209.1	2.198	0.588	1.001	0.101(966)	0.06(42)	0.385(6689)	non tumor-specific	nAS	yes
AQP5_LS010	chr12:49964175|49964992:+	AQP5	aquaporin 5	protein coding gene	no	ENST00000293599.6;ENST00000553132.1;ENST00000293599.6;ENST00000553132.1;ENST00000293599.6;ENST00000553132.1	26.794	11.759	4.002	0.608(5823)	0.813(571)	0.68(11824)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TTLL3_LS002	chr3:9808657|9810621:+	TTLL3	tubulin tyrosine ligase like 3	protein coding gene	no	ENST00000414814.5;ENST00000452597.5	0.073	0.035	0.706	0.175(1680)	0.179(126)	0.073(1274)	non tumor-specific	nAS	yes
PACRGL_LS055	chr4:20707870|20712788:+	PACRGL	parkin coregulated like	protein coding gene	no	ENST00000508952.5;ENST00000503747.5	0.117	0.120	2.325	0.882(8455)	0.887(623)	0.841(14615)	non tumor-specific	alt_3prime;exon_skip	yes
SPTBN2_LS039	chr11:66721262|66721350:-	SPTBN2	spectrin beta, non-erythrocytic 2	protein coding gene	no	ENST00000533211.5;ENST00000309996.6;ENST00000617502.4;ENST00000611817.4	0.347	0.481	3.473	0.648(6213)	0.601(422)	0.489(8493)	non tumor-specific	exon_skip	yes
FGFR1_LS040	chr8:38428435|38467672:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	ENST00000533668.5	0.002	0.019	0.623	0.01(93)	0.02(14)	0.019(327)	non tumor-specific	exon_skip	yes
UN_LINC02009_UP_LS0002	chr3:46423717|46436126:-	LINC02009	long intergenic non-protein coding RNA 2009	lncRNA gene	no	.	5.956	0.562	0.000	0.004(39)	0.02(14)	0(0)	non tumor-specific	nAS	no
NEURL4_LS028	chr17:7325713|7326255:-	NEURL4	neuralized E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000315614.11;ENST00000399464.6;ENST00000573186.5;ENST00000570460.5;ENST00000571887.5;ENST00000573651.5;ENST00000576966.5;ENST00000571243.1	7.136	5.430	18.145	0.953(9135)	0.962(675)	0.977(16989)	non tumor-specific	nAS	yes
PLAU_LS014	chr10:73913381|73913539:+	PLAU	plasminogen activator, urokinase	protein coding gene	no	ENST00000446342.5;ENST00000494287.1;ENST00000372764.3	74.289	49.547	11.174	0.968(9277)	0.969(680)	0.91(15818)	non tumor-specific	alt_5prime;exon_skip	yes
GALNT13_LS018	chr2:154409082|154438592:+	GALNT13	polypeptide N-acetylgalactosaminyltransferase 13	protein coding gene	no	ENST00000392825.7;ENST00000409237.5;ENST00000487047.1	9.508	2.374	2.564	0.228(2180)	0.276(194)	0.545(9480)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC068547.1_LS008	chr2:151815199|151841903:-	AC068547.1	-	protein coding gene	no	ENST00000637559.1	0.119	0.002	0.732	0.001(8)	0.001(1)	0.059(1027)	non tumor-specific	nAS	yes
UN_AC104662.2_LS0026	chr4:25196815|25233789:-	AC104662.2	-	protein coding gene	no	.	3.935	1.036	0.000	0.139(1332)	0.107(75)	0(0)	non tumor-specific	nAS	no
MRPL19_LS004	chr2:75652657|75654736:+	MRPL19	mitochondrial ribosomal protein L19	protein coding gene	no	ENST00000393909.6;ENST00000409374.5;ENST00000476622.1	97.465	61.365	40.810	0.997(9551)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip	yes
NUTF2_LS003	chr16:67847456|67865102:+	NUTF2	nuclear transport factor 2	protein coding gene	no	ENST00000567105.5;ENST00000569436.6;ENST00000570026.1	12.048	9.682	22.941	0.954(9145)	0.966(678)	0.979(17009)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_MTOR_LS0016	chr1:11124629|11126622:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	.	5.942	2.387	0.000	0.005(48)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_TLN1_LS0054	chr9:35697707|35697821:+	TLN1	talin 1	protein coding gene	no	.	3.546	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IL21R_LS0001	chr16:27402618|27403044:+	IL21R	interleukin 21 receptor	protein coding gene	no	.	4.284	0.212	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
WDR93_LS018	chr15:89737729|89738041:+	WDR93	WD repeat domain 93	protein coding gene	no	ENST00000268130.11;ENST00000560294.5;ENST00000444934.3	2.990	1.534	1.245	0.108(1035)	0.202(142)	0.308(5354)	non tumor-specific	alt_3prime;intron_retention	yes
UN_ITPRID2_LS0028	chr2:181915868|181915946:-	ITPRID2	ITPR interacting domain containing 2	protein coding gene	no	.	4.776	0.474	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
MROH2B_LS034	chr5:41054840|41055742:-	MROH2B	maestro heat like repeat family member 2B	protein coding gene	no	ENST00000515297.5;ENST00000399564.4;ENST00000508575.1	13.631	0.000	0.662	0(2)	0(0)	0.009(165)	non tumor-specific	nAS	yes
SLC39A12_LS008	chr10:17987651|17991151:+	SLC39A12	solute carrier family 39 member 12	protein coding gene	no	ENST00000539911.5;ENST00000377369.6;ENST00000377374.8;ENST00000377371.3	6.443	4.864	6.307	0.063(599)	0.009(6)	0.226(3936)	non tumor-specific	nAS	yes
UN_DUXAP9_LS0017	chr14:19068568|19074268:+	DUXAP9	double homeobox A pseudogene 9	pseudogene	no	.	6.774	0.172	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
CIC_LS022	chr19:42292859|42292959:+	CIC	capicua transcriptional repressor	protein coding gene	yes	ENST00000572681.6;ENST00000160740.7	28.679	15.370	32.666	0.944(9047)	0.977(686)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
UN_ZDHHC1_LS0023	chr16:67401065|67406175:-	ZDHHC1	zinc finger DHHC-type containing 1	protein coding gene	no	.	2.997	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
KHDC4_LS003	chr1:155916709|155917499:-	KHDC4	KH domain containing 4, pre-mRNA splicing factor	protein coding gene	no	ENST00000478002.5;ENST00000466520.1	7.800	2.923	17.102	0.936(8969)	0.869(610)	0.972(16898)	non tumor-specific	alt_3prime;intron_retention	yes
PCSK5_LS035	chr9:76310851|76321422:+	PCSK5	proprotein convertase subtilisin/kexin type 5	protein coding gene	no	ENST00000545128.5;ENST00000424854.6	2.209	4.000	0.901	0.151(1444)	0.292(205)	0.126(2190)	non tumor-specific	nAS	yes
AC016044.1_LS001	chr15:52801647|52804209:-	AC016044.1	-	lncRNA gene	no	ENST00000560818.1	0.398	0.019	0.695	0.007(67)	0.004(3)	0.003(57)	non tumor-specific	nAS	yes
NEBL_LS037	chr10:20961779|21020117:-	NEBL	nebulette	protein coding gene	no	ENST00000417816.2	12.570	16.426	8.018	0.76(7279)	0.876(615)	0.799(13882)	non tumor-specific	nAS	yes
PRKACB_LS008	chr1:84165013|84173329:+	PRKACB	protein kinase cAMP-activated catalytic subunit beta	protein coding gene	no	ENST00000450730.5;ENST00000370680.5;ENST00000614872.4;ENST00000394839.6	0.414	3.855	7.165	0.077(736)	0.037(26)	0.171(2975)	non tumor-specific	exon_skip	yes
ACAD8_LS017	chr11:134259084|134259608:+	ACAD8	acyl-CoA dehydrogenase family member 8	protein coding gene	no	ENST00000281182.8;ENST00000526026.5;ENST00000524426.5;ENST00000534433.5;ENST00000374752.6;ENST00000530533.5;ENST00000534240.5;ENST00000533387.5;ENST00000524547.5;ENST00000531338.5;ENST00000528325.5;ENST00000527665.5;ENST00000527713.1	23.230	22.046	31.543	0.99(9482)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
KCNMB2-AS1_LS010	chr3:178749236|178841545:-	KCNMB2-AS1	KCNMB2 antisense RNA 1	lncRNA gene	no	ENST00000432385.5;ENST00000425330.1	2.550	0.209	0.744	0.271(2596)	0.02(14)	0.059(1025)	non tumor-specific	nAS	yes
UN_INTS4P1_LS0032	chr7:65219999|65231005:-	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	1.621	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
DLC1_LS024	chr8:13393693|13401470:-	DLC1	dynein light chain LC8-type 1	protein coding gene	yes	ENST00000276297.8;ENST00000316609.9;ENST00000511869.1	2.590	1.277	6.326	0.394(3775)	0.611(429)	0.862(14988)	non tumor-specific	exon_skip	yes
ROS1_LS043	chr6:117409642|117414519:-	ROS1	ROS proto-oncogene 1, receptor tyrosine kinase	protein coding gene	yes	ENST00000368507.7	5.105	2.313	1.492	0.092(884)	0.182(128)	0.078(1352)	non tumor-specific	exon_skip	yes
UN_AC007262.2_LS0017	chr14:81165862|81170109:-	AC007262.2	-	lncRNA gene	no	.	0.902	0.171	0.000	0.006(58)	0.01(7)	0(0)	non tumor-specific	nAS	no
SMARCD3_LS020	chr7:151245671|151248485:-	SMARCD3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein coding gene	no	ENST00000262188.12;ENST00000472988.5;ENST00000485610.5	4.535	2.925	9.989	0.75(7186)	0.889(624)	0.917(15936)	non tumor-specific	exon_skip	yes
UN_ACTN4_LS0210	chr19:38729361|38729445:-	ACTN4	actinin alpha 4	protein coding gene	yes	.	13.249	7.919	0.000	0.012(113)	0.009(6)	0(0)	non tumor-specific	nAS	no
VPS35L_LS011	chr16:19575122|19581525:+	VPS35L	VPS35 endosomal protein sorting factor like	protein coding gene	no	ENST00000563649.1	0.170	0.072	0.638	0.454(4354)	0.524(368)	0.019(325)	non tumor-specific	exon_skip	yes
UN_SYNE2_LS0134	chr14:64177483|64186431:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	.	4.148	0.465	0.000	0.006(61)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SNCA_UP_LS0008	chr4:90040072|90051880:-	SNCA	synuclein alpha	protein coding gene	no	.	4.681	0.117	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
SELENOT_LS010	chr3:150622495|150623043:+	SELENOT	selenoprotein T	protein coding gene	no	ENST00000480740.5;ENST00000615547.4;ENST00000471696.5;ENST00000477889.5;ENST00000492132.1;ENST00000485923.1	186.350	124.385	88.100	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
NUP43_LS004	chr6:149727481|149731613:-	NUP43	nucleoporin 43	protein coding gene	no	.;.	2.897	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
DHX29_LS029	chr5:55297398|55307387:-	DHX29	DExH-box helicase 29	protein coding gene	no	ENST00000508346.1	0.723	0.486	0.630	0.611(5856)	0.772(542)	0.089(1541)	non tumor-specific	exon_skip	yes
UN_AC027117.2_LS0014	chr8:17804448|17805871:-	AC027117.2	-	lncRNA gene	no	.	2.717	0.405	0.000	0.013(129)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_WWOX_LS0012	chr16:78164289|78260008:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	2.021	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
LTN1_LS012	chr21:28947606|28952160:-	LTN1	listerin E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000361371.9;ENST00000389194.6;ENST00000614971.4	13.614	9.710	9.485	0.873(8365)	0.954(670)	0.96(16688)	non tumor-specific	nAS	yes
MAP4K3_LS040	chr2:39356339|39436892:-	MAP4K3	mitogen-activated protein kinase kinase kinase kinase 3	protein coding gene	no	ENST00000437968.1	0.034	0.036	0.698	0.446(4273)	0.548(385)	0.234(4068)	non tumor-specific	exon_skip	yes
UN_AC008074.1_UP_LS0001	chr2:64323822|64344552:+	AC008074.1	-	pseudogene	no	.	1.879	0.345	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
PPAN_LS012	chr19:10110614|10110697:+	PPAN	peter pan homolog	protein coding gene	no	ENST00000253107.11;ENST00000393793.5;ENST00000468881.1;ENST00000444703.1;ENST00000486482.1	83.488	28.971	53.044	0.995(9535)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
KDM6A_LS039	chrX:45090864|45107410:+	KDM6A	lysine demethylase 6A	protein coding gene	yes	ENST00000611820.4;ENST00000382899.8;ENST00000536777.5;ENST00000377967.8;ENST00000414389.5;ENST00000433797.5;ENST00000611820.4;ENST00000382899.8;ENST00000536777.5;ENST00000377967.8;ENST00000414389.5;ENST00000433797.5	22.805	16.439	16.930	0.974(9328)	0.996(699)	0.978(17006)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_EFL1_LS0003	chr15:82138842|82143524:-	EFL1	elongation factor like GTPase 1	protein coding gene	no	.	2.836	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
OSBPL5_LS027	chr11:3122428|3126473:-	OSBPL5	oxysterol binding protein like 5	protein coding gene	no	ENST00000263650.11;ENST00000389989.7;ENST00000525498.5;ENST00000471998.6;ENST00000348039.9;ENST00000534491.5;ENST00000459995.5;ENST00000533234.5;ENST00000465323.1;ENST00000477622.1;ENST00000526122.5;ENST00000530372.5;ENST00000533721.5	13.957	12.180	32.912	0.975(9342)	0.98(688)	0.97(16858)	non tumor-specific	alt_3prime;intron_retention	yes
C9orf135_LS006	chr9:69857977|69886838:+	C9orf135	chromosome 9 open reading frame 135	protein coding gene	no	ENST00000377197.7;ENST00000529446.5;ENST00000529131.5	2.794	2.247	1.845	0.147(1411)	0.36(253)	0.158(2745)	non tumor-specific	exon_skip	yes
UN_LINC01825_LS0004	chr2:195538132|195538317:+	LINC01825	long intergenic non-protein coding RNA 1825	lncRNA gene	no	.	2.856	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
FBXO44_LS007	chr1:11654952|11655806:+	FBXO44	F-box protein 44	protein coding gene	no	ENST00000376768.5;ENST00000251547.9;ENST00000376762.8	15.629	12.120	21.619	0.916(8776)	0.936(657)	0.978(17002)	non tumor-specific	alt_3prime;exon_skip	yes
KCNH2_LS014	chr7:150959736|150974711:-	KCNH2	potassium voltage-gated channel subfamily H member 2	protein coding gene	no	ENST00000262186.9;ENST00000532957.5;ENST00000430723.4	6.464	2.857	5.872	0.345(3305)	0.305(214)	0.561(9757)	non tumor-specific	nAS	yes
UN_CHD6_LS0081	chr20:41551360|41564011:-	CHD6	chromodomain helicase DNA binding protein 6	protein coding gene	no	.	1.199	0.327	0.000	0.031(299)	0.034(24)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
RER1_LS010	chr1:2391958|2395784:+	RER1	retention in endoplasmic reticulum sorting receptor 1	protein coding gene	no	ENST00000378513.7;ENST00000378518.5;ENST00000605895.5;ENST00000493207.1;ENST00000378512.5;ENST00000378513.7;ENST00000378518.5;ENST00000605895.5;ENST00000493207.1;ENST00000378512.5;ENST00000378513.7;ENST00000378518.5;ENST00000605895.5;ENST00000493207.1;ENST00000378512.5	39.871	29.517	55.388	0.986(9447)	0.986(692)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
POLR1B_LS011	chr2:112547179|112547421:+	POLR1B	RNA polymerase I subunit B	protein coding gene	no	ENST00000263331.9;ENST00000438748.5;ENST00000541869.5;ENST00000333990.10;ENST00000409894.7;ENST00000424062.1;ENST00000496238.5;ENST00000468475.1	10.888	5.871	4.573	0.913(8752)	0.969(680)	0.917(15936)	non tumor-specific	exon_skip;intron_retention	yes
DMTF1_LS053	chr7:87182337|87184397:+	DMTF1	cyclin D binding myb like transcription factor 1	protein coding gene	yes	ENST00000331242.11;ENST00000413276.6;ENST00000447863.5;ENST00000579677.5;ENST00000425406.5;ENST00000547146.6;ENST00000579850.5;ENST00000432937.6;ENST00000584619.5;ENST00000394703.9;ENST00000412139.6;ENST00000473521.5;ENST00000582887.1	17.456	8.959	47.791	0.967(9266)	0.986(692)	0.978(17002)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SLC25A29_LS0067	chr14:100299173|100306199:-	SLC25A29	solute carrier family 25 member 29	protein coding gene	no	.	2.516	0.331	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ZNF815P_LS0001	chr7:5823526|5824397:+	ZNF815P	zinc finger protein 815, pseudogene	pseudogene	no	.	1.283	0.066	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
VSTM4_LS005	chr10:49077326|49085955:-	VSTM4	V-set and transmembrane domain containing 4	protein coding gene	no	ENST00000332853.8	10.658	12.594	10.002	0.677(6491)	0.939(659)	0.919(15978)	non tumor-specific	exon_skip	yes
UN_BTF3P2_UP_LS0012	chr14:28729072|28729175:-	BTF3P2	BTF3 pseudogene 2	pseudogene	no	.	2.156	0.767	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WEE2_LS0003	chr7:141713081|141714189:-	WEE2	WEE2 oocyte meiosis inhibiting kinase	protein coding gene	no	.	1.075	0.269	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	nAS	no
CDK13_LS001	chr7:39951852|39987599:+	CDK13	cyclin dependent kinase 13	protein coding gene	no	ENST00000181839.9;ENST00000340829.10;ENST00000613626.4;ENST00000646039.1;ENST00000611390.1;ENST00000643859.1	6.016	3.691	17.271	0.962(9216)	0.962(675)	0.978(16997)	non tumor-specific	exon_skip	yes
UN_NUTM2A-AS1_LS0003	chr10:87203936|87288442:-	NUTM2A-AS1	NUTM2A antisense RNA 1	lncRNA gene	no	.	3.491	0.560	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
SOX2-OT_LS062	chr3:181715292|181790673:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000629112.3	0.071	0.014	1.166	0.063(606)	0.004(3)	0.053(926)	non tumor-specific	nAS	yes
UN_ZMYM2_LS0018	chr13:20006586|20019551:+	ZMYM2	zinc finger MYM-type containing 2	protein coding gene	yes	.	1.938	0.116	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CAMSAP1_LS006	chr9:135817847|135817977:-	CAMSAP1	calmodulin regulated spectrin associated protein 1	protein coding gene	no	ENST00000493088.1	0.187	0.108	0.740	0.28(2684)	0.295(207)	0.212(3678)	non tumor-specific	nAS	yes
ARPC1B_LS022	chr7:99390012|99390904:+	ARPC1B	actin related protein 2/3 complex subunit 1B	protein coding gene	no	ENST00000484375.5	3.500	7.309	0.798	0.427(4094)	0.486(341)	0.309(5371)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
BCL2L13_LS001	chr22:17628906|17638102:+	BCL2L13	BCL2 like 13	protein coding gene	no	ENST00000399781.5	0.396	0.452	0.775	0.31(2972)	0.43(302)	0.31(5392)	non tumor-specific	alt_5prime	yes
UN_CCDC112_LS0015	chr5:115284929|115296427:-	CCDC112	coiled-coil domain containing 112	protein coding gene	no	.	1.021	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ARSJ_LS0020	chr4:113960088|113978437:-	ARSJ	arylsulfatase family member J	protein coding gene	no	.	1.311	0.401	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ERAP1_LS014	chr5:96790367|96790512:-	ERAP1	endoplasmic reticulum aminopeptidase 1	protein coding gene	no	ENST00000296754.7;ENST00000443439.6;ENST00000507859.1	27.567	19.501	15.779	0.977(9359)	0.99(695)	0.975(16939)	non tumor-specific	alt_5prime	yes
UN_AL590385.2_LS0030	chr1:161518082|161599678:+	AL590385.2	-	lncRNA gene	no	.	14.957	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP236383.2_UP_LS0146	chr21:8399120|8434226:-	FP236383.2	-	lncRNA gene	no	.	2.738	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0316	chr21:8399432|8443488:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	538.055	105.924	0.000	0.022(211)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_RUSC1_UP_LS0007	chr1:155306399|155308854:+	RUSC1	RUN and SH3 domain containing 1	protein coding gene	no	.	1.106	18.934	0.000	0.014(134)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SLCO2B1_UP_LS0003	chr11:74987015|74988587:+	SLCO2B1	solute carrier organic anion transporter family member 2B1	protein coding gene	no	.	0.484	0.124	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_NBPF8_LS0006	chr1:120436633|120442987:-	NBPF8	NBPF member 8	pseudogene	no	.	2.469	0.549	0.000	0.009(83)	0.013(9)	0(0)	non tumor-specific	nAS	no
ANKRD50_LS004	chr4:124678905|124712458:-	ANKRD50	ankyrin repeat domain 50	protein coding gene	no	ENST00000515641.1	0.199	0.147	0.666	0.153(1466)	0.162(114)	0.073(1272)	non tumor-specific	exon_skip	yes
FAM120C_LS014	chrX:54151373|54157689:-	FAM120C	family with sequence similarity 120C	protein coding gene	no	ENST00000375180.6;ENST00000328235.4	4.314	2.395	1.991	0.517(4950)	0.65(456)	0.788(13698)	non tumor-specific	nAS	yes
RYR1_LS055	chr19:38505398|38505806:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7;ENST00000594335.5	6.596	4.748	1.471	0.076(727)	0.057(40)	0.569(9898)	non tumor-specific	nAS	yes
GLE1_LS019	chr9:128536484|128537986:+	GLE1	GLE1 RNA export mediator	protein coding gene	no	ENST00000309971.8;ENST00000372770.4	59.754	31.839	26.073	0.994(9525)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RASGRP3_LS0034	chr2:33558336|33558677:+	RASGRP3	RAS guanyl releasing protein 3	protein coding gene	no	.	4.628	1.093	0.000	0.039(369)	0.047(33)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC145138.1_UP_LS0011	chr5:71140034|71142645:-	AC145138.1	-	pseudogene	no	.	2.639	0.418	0.000	0.059(565)	0.053(37)	0(0)	non tumor-specific	nAS	no
RBL2_LS002	chr16:53434796|53439016:+	RBL2	RB transcriptional corepressor like 2	protein coding gene	yes	ENST00000262133.10	12.255	11.672	21.366	0.917(8784)	0.98(688)	0.975(16948)	non tumor-specific	exon_skip	yes
DCAF11_LS002	chr14:24114924|24115206:+	DCAF11	DDB1 and CUL4 associated factor 11	protein coding gene	no	ENST00000559017.5;ENST00000559796.5	0.061	0.072	0.870	0.633(6060)	0.768(539)	0.487(8463)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_A2MP1_LS0037	chr12:9257991|9260614:+	A2MP1	alpha-2-macroglobulin pseudogene 1	pseudogene	no	.	3.409	0.557	0.000	0.018(175)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_AL928742.1_UP_LS0067	chr14:105668560|105741629:-	AL928742.1	-	lncRNA gene	no	.	1024.950	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STK19_LS0003	chr6:31971147|31971306:-	STK19	serine/threonine kinase 19	protein coding gene	no	.	9.543	0.643	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
MAST4_LS055	chr5:67142533|67144669:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11;ENST00000443808.1	6.104	5.865	5.849	0.722(6920)	0.91(639)	0.897(15598)	non tumor-specific	nAS	yes
METTL3_LS018	chr14:21499802|21503173:-	METTL3	methyltransferase like 3	protein coding gene	no	ENST00000396522.6	0.070	0.071	2.874	0.81(7762)	0.711(499)	0.892(15509)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ALG14_LS0010	chr1:95022367|95027129:-	ALG14	ALG14 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	.	1.384	0.300	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ATXN2_LS022	chr12:111470742|111482787:-	ATXN2	ataxin 2	protein coding gene	no	ENST00000551755.6	0.030	0.007	1.517	0.239(2292)	0.274(192)	0.638(11094)	non tumor-specific	exon_skip;mutex_exons	yes
NLRP13_LS007	chr19:55910733|55911706:-	NLRP13	NLR family pyrin domain containing 13	protein coding gene	no	ENST00000588751.5;ENST00000342929.3	2.934	0.359	1.538	0.001(13)	0.003(2)	0.018(305)	non tumor-specific	nAS	yes
C1orf112_LS021	chr1:169823472|169827051:+	C1orf112	chromosome 1 open reading frame 112	protein coding gene	no	ENST00000498289.5;ENST00000359326.8;ENST00000459772.5;ENST00000286031.10;ENST00000413811.3	11.839	2.780	3.965	0.872(8352)	0.732(514)	0.926(16094)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SYT3_LS0006	chr19:50638838|50639025:-	SYT3	synaptotagmin 3	protein coding gene	no	.	2.360	0.739	0.000	0.014(135)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
NCSTN_LS012	chr1:160350250|160351288:+	NCSTN	nicastrin	protein coding gene	no	ENST00000424645.6	1.503	1.109	1.310	0.892(8548)	0.895(628)	0.663(11528)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HNRNPUL1_LS0076	chr19:41304100|41304143:-	HNRNPUL1	heterogeneous nuclear ribonucleoprotein U like 1	protein coding gene	no	.	1.560	0.323	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYH16_LS030	chr7:99304756|99305836:+	MYH16	myosin heavy chain 16 pseudogene	pseudogene	no	ENST00000439784.7;ENST00000452010.2	0.940	0.323	0.699	0.107(1022)	0.03(21)	0.081(1404)	non tumor-specific	nAS	yes
TLN1_LS032	chr9:35710683|35710797:-	TLN1	talin 1	protein coding gene	no	ENST00000314888.9	180.640	149.641	163.064	0.971(9304)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CAMSAP2_LS012	chr1:200847292|200847640:+	CAMSAP2	calmodulin regulated spectrin associated protein family member 2	protein coding gene	no	ENST00000358823.6;ENST00000413307.6;ENST00000236925.8	13.548	10.239	9.757	0.872(8359)	0.934(656)	0.928(16129)	non tumor-specific	exon_skip;intron_retention	yes
RPL36_LS005	chr19:5685119|5690031:+	RPL36	ribosomal protein L36	protein coding gene	no	ENST00000577222.5	0.878	0.587	1.009	0.331(3174)	0.33(232)	0.413(7186)	non tumor-specific	nAS	yes
ACSM5_LS006	chr16:20421401|20423916:+	ACSM5	acyl-CoA synthetase medium chain family member 5	protein coding gene	no	ENST00000331849.8;ENST00000570305.5;ENST00000573920.1	4.777	15.837	3.663	0.326(3120)	0.668(469)	0.788(13698)	non tumor-specific	alt_5prime;exon_skip	yes
RNF128_LS001	chrX:106693873|106694073:+	RNF128	ring finger protein 128	protein coding gene	no	ENST00000418562.5	0.418	0.204	0.745	0.029(278)	0.061(43)	0.006(100)	non tumor-specific	exon_skip;intron_retention	yes
ADAMTS12_LS009	chr5:33603725|33614238:-	ADAMTS12	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein coding gene	no	ENST00000506952.1	0.344	0.068	0.648	0.071(679)	0.08(56)	0.065(1126)	non tumor-specific	nAS	yes
LAMTOR4_LS013	chr7:100149579|100153400:+	LAMTOR4	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein coding gene	no	ENST00000341942.9;ENST00000460732.5;ENST00000441173.1;ENST00000468582.5;ENST00000488241.5;ENST00000466498.2	400.968	197.366	214.293	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
HIP1_LS019	chr7:75558255|75559732:-	HIP1	huntingtin interacting protein 1	protein coding gene	no	ENST00000336926.10;ENST00000434438.6;ENST00000616821.4;ENST00000404944.3	16.544	11.914	11.224	0.887(8500)	0.952(668)	0.968(16820)	non tumor-specific	exon_skip	yes
UN_TCF7L1_LS0021	chr2:85303997|85304237:+	TCF7L1	transcription factor 7 like 1	protein coding gene	no	.	4.352	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
RARS2_LS024	chr6:87564232|87564544:-	RARS2	arginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000451155.1	0.085	0.185	0.833	0.424(4064)	0.5(351)	0.425(7389)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KRT6C_UP_LS0009	chr12:52491736|52519742:-	KRT6C	keratin 6C	protein coding gene	no	.	241.115	351.453	0.000	0.008(77)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC068946.1_LS0007	chr2:219078206|219122222:-	AC068946.1	-	protein coding gene	no	.	1.426	2.837	0.000	0.001(12)	0.014(10)	0(0)	non tumor-specific	nAS	no
LYSMD4_LS006	chr15:99729731|99731173:-	LYSMD4	LysM domain containing 4	protein coding gene	no	ENST00000332728.8;ENST00000344791.6;ENST00000479791.1;ENST00000450512.1	1.490	0.638	1.325	0.253(2423)	0.209(147)	0.578(10046)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_CTSD_LS0155	chr11:1753119|1753157:+	CTSD	cathepsin D	protein coding gene	no	.	14.565	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_REV1_LS0030	chr2:99424280|99424792:-	REV1	REV1 DNA directed polymerase	protein coding gene	no	.	1.840	0.819	0.000	0.059(567)	0.071(50)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_KIAA0556_LS0087	chr16:27773209|27774933:+	KIAA0556	katanin interacting protein	protein coding gene	no	.	2.752	0.161	0.000	0.009(82)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
GDPD2_LS014	chrX:70429714|70429915:+	GDPD2	glycerophosphodiester phosphodiesterase domain containing 2	protein coding gene	no	ENST00000453994.6;ENST00000538649.5;ENST00000536730.5;ENST00000374382.3	7.915	8.661	9.376	0.266(2550)	0.211(148)	0.36(6265)	non tumor-specific	alt_5prime;intron_retention	yes
UN_HSPA1L_UP_LS0077	chr6:31816437|31828548:-	HSPA1L	heat shock protein family A (Hsp70) member 1 like	protein coding gene	no	.	4.445	1.863	0.000	0.028(268)	0.048(34)	0(0)	non tumor-specific	nAS	no
HNMT_LS012	chr2:138001025|138002064:+	HNMT	histamine N-methyltransferase	protein coding gene	no	ENST00000410115.5;ENST00000280097.4;ENST00000467390.5;ENST00000485653.1	77.203	90.093	35.228	0.975(9342)	0.997(700)	0.974(16925)	non tumor-specific	exon_skip	yes
AP003068.3_LS001	chr11:65117244|65117372:+	AP003068.3	-	lncRNA gene	no	ENST00000527789.1	0.047	0.047	0.755	0.451(4325)	0.416(292)	0.329(5711)	non tumor-specific	nAS	yes
UN_PRNP_LS0037	chr20:4699422|4699471:-	PRNP	prion protein	protein coding gene	no	.	6.704	2.217	0.000	0.023(216)	0.02(14)	0(0)	non tumor-specific	nAS	no
C18orf54_LS003	chr18:54358870|54360527:+	C18orf54	chromosome 18 open reading frame 54	protein coding gene	no	ENST00000620105.4;ENST00000648616.1;ENST00000382911.8;ENST00000300091.5	2.310	0.525	1.229	0.489(4683)	0.442(310)	0.579(10061)	non tumor-specific	nAS	yes
UN_NPLOC4_LS0013	chr17:81557177|81557210:+	NPLOC4	NPL4 homolog, ubiquitin recognition factor	protein coding gene	no	.	4.894	0.198	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GLIS3_LS0052	chr9:4286523|4298280:-	GLIS3	GLIS family zinc finger 3	protein coding gene	no	.	2.721	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime	no
SPEF2_LS021	chr5:35697793|35700496:+	SPEF2	sperm flagellar 2	protein coding gene	no	ENST00000509059.5;ENST00000637569.1;ENST00000356031.7;ENST00000440995.6;ENST00000504054.1;ENST00000509059.5;ENST00000637569.1;ENST00000356031.7;ENST00000440995.6;ENST00000504054.1	2.664	2.471	1.937	0.407(3897)	0.595(418)	0.71(12343)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
SH3PXD2B_LS012	chr5:172362869|172373790:-	SH3PXD2B	SH3 and PX domains 2B	protein coding gene	no	ENST00000636523.1;ENST00000519643.5;ENST00000311601.5	13.934	7.952	8.461	0.883(8457)	0.89(625)	0.928(16124)	non tumor-specific	exon_skip	yes
TP53I3_LS004	chr2:24081031|24082885:-	TP53I3	tumor protein p53 inducible protein 3	protein coding gene	no	ENST00000335934.8;ENST00000238721.8;ENST00000407482.5;ENST00000413037.1	62.447	43.328	28.891	0.998(9559)	0.996(699)	0.978(16998)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ACPP_LS025	chr3:132356855|132367704:+	ACPP	acid phosphatase 3	protein coding gene	no	ENST00000351273.11	5.960	4.324	2.375	0.557(5338)	0.746(524)	0.532(9241)	non tumor-specific	exon_skip	yes
UN_PITPNM2_LS0062	chr12:123034685|123077794:-	PITPNM2	phosphatidylinositol transfer protein membrane associated 2	protein coding gene	no	.	1.353	1.919	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM253_LS013	chr14:21102192|21102633:+	TMEM253	transmembrane protein 253	protein coding gene	no	.;.	0.713	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PHLPP1_LS0006	chr18:62741519|62830035:+	PHLPP1	PH domain and leucine rich repeat protein phosphatase 1	protein coding gene	yes	.	2.213	1.450	0.000	0.011(107)	0.054(38)	0(0)	non tumor-specific	nAS	no
UN_SRCIN1_LS0058	chr17:38596129|38605633:-	SRCIN1	SRC kinase signaling inhibitor 1	protein coding gene	no	.	0.772	0.172	0.000	0.01(96)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ZNF208_LS008	chr19:21988909|21991439:-	ZNF208	zinc finger protein 208	protein coding gene	no	ENST00000601993.1	0.048	0.011	0.719	0.022(206)	0.019(13)	0.07(1216)	non tumor-specific	exon_skip;mutex_exons	yes
F5_LS010	chr1:169528094|169530786:-	F5	coagulation factor V	protein coding gene	no	.;.	1.012	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SGSH_LS0020	chr17:80210682|80210731:+	SGSH	N-sulfoglucosamine sulfohydrolase	protein coding gene	no	.	2.770	0.219	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CNKSR2_LS0002	chrX:21501588|21504789:+	CNKSR2	connector enhancer of kinase suppressor of Ras 2	protein coding gene	no	.	1.461	0.359	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TPT1-AS1_LS026	chr13:45379335|45381142:+	TPT1-AS1	TPT1 antisense RNA 1	lncRNA gene	no	ENST00000523445.5	2.556	1.363	0.851	0.195(1870)	0.229(161)	0.001(12)	non tumor-specific	nAS	yes
BEST3_LS006	chr12:69672965|69676916:-	BEST3	bestrophin 3	protein coding gene	no	ENST00000331471.8;ENST00000330891.9;ENST00000553096.5	3.016	1.003	2.685	0.08(769)	0.033(23)	0.196(3408)	non tumor-specific	exon_skip	yes
UN_DEF8_LS0013	chr16:89963443|89964176:+	DEF8	differentially expressed in FDCP 8 homolog	protein coding gene	no	.	3.912	0.251	0.000	0.008(73)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SNAPC4_LS010	chr9:136384032|136384720:-	SNAPC4	small nuclear RNA activating complex polypeptide 4	protein coding gene	no	ENST00000298532.2	12.878	5.797	11.120	0.952(9119)	0.962(675)	0.975(16955)	non tumor-specific	nAS	yes
SNX2_LS017	chr5:122826193|122827379:+	SNX2	sorting nexin 2	protein coding gene	no	ENST00000379516.6;ENST00000514949.1;ENST00000510372.5;ENST00000514030.1	237.961	166.229	120.051	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM87B_LS007	chr2:112074962|112077192:+	TMEM87B	transmembrane protein 87B	protein coding gene	no	ENST00000283206.8	29.845	21.114	7.860	0.928(8892)	0.976(685)	0.948(16473)	non tumor-specific	exon_skip	yes
ANK2_LS006	chr4:113117418|113174416:+	ANK2	ankyrin 2	protein coding gene	no	ENST00000508613.5	0.321	0.913	1.984	0.148(1418)	0.332(233)	0.149(2596)	non tumor-specific	exon_skip	yes
RGL3_LS023	chr19:11402132|11402215:-	RGL3	ral guanine nucleotide dissociation stimulator like 3	protein coding gene	no	ENST00000562663.5;ENST00000563726.5;ENST00000380456.7;ENST00000393423.7;ENST00000589032.1	20.195	13.088	9.710	0.707(6775)	0.846(594)	0.933(16218)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RNF14_LS012	chr5:141973742|141974804:+	RNF14	ring finger protein 14	protein coding gene	no	ENST00000511961.5;ENST00000506822.5;ENST00000513019.5;ENST00000394519.5;ENST00000356143.5;ENST00000347642.7;ENST00000394520.6;ENST00000506938.5;ENST00000507163.5;ENST00000507291.1	25.056	21.252	26.190	0.985(9434)	0.994(698)	0.978(17006)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_HSPA1L_UP_LS0175	chr6:31816992|31829121:-	HSPA1L	heat shock protein family A (Hsp70) member 1 like	protein coding gene	no	.	7.501	1.102	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
CARMIL1_LS033	chr6:25556850|25576976:+	CARMIL1	capping protein regulator and myosin 1 linker 1	protein coding gene	no	ENST00000635618.1	5.407	0.391	1.456	0.002(20)	0.001(1)	0.111(1923)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PTPN18_LS0030	chr2:130370964|130372257:+	PTPN18	protein tyrosine phosphatase non-receptor type 18	protein coding gene	no	.	1.207	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_POLR2J4_LS0019	chr7:43973318|43986192:-	POLR2J4	RNA polymerase II subunit J4, pseudogene	pseudogene	no	.	2.238	0.330	0.000	0.01(99)	0.007(5)	0(0)	non tumor-specific	nAS	no
AL365259.1_LS002	chr6:125645700|125657429:-	AL365259.1	-	lncRNA gene	no	ENST00000427852.6;ENST00000451660.6	4.266	1.094	1.165	0.181(1733)	0.174(122)	0.273(4751)	non tumor-specific	nAS	yes
UN_EEF2_LS0211	chr19:3977317|3977443:+	EEF2	eukaryotic translation elongation factor 2	protein coding gene	no	.	95.302	25.001	0.000	0.041(391)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_DLGAP4_LS0033	chr20:36508274|36512485:-	DLGAP4	DLG associated protein 4	protein coding gene	no	.	1.871	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TGFBR3_LS0027	chr1:91797471|91828941:-	TGFBR3	transforming growth factor beta receptor 3	protein coding gene	yes	.	1.132	0.117	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
SNX27_LS014	chr1:151683445|151692435:+	SNX27	sorting nexin 27	protein coding gene	no	ENST00000642376.1;ENST00000368843.8;ENST00000368841.7;ENST00000458013.6;ENST00000642479.1;ENST00000642349.1;ENST00000643179.1;ENST00000644970.1;ENST00000647328.1;ENST00000368838.2;ENST00000643937.1;ENST00000647551.1	16.269	11.060	10.923	0.932(8927)	0.969(680)	0.975(16945)	non tumor-specific	nAS	yes
UN_ASB13_LS0014	chr10:5641961|5644348:-	ASB13	ankyrin repeat and SOCS box containing 13	protein coding gene	no	.	1.916	0.663	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UXS1_LS011	chr2:106129778|106138175:-	UXS1	UDP-glucuronate decarboxylase 1	protein coding gene	no	ENST00000409032.5	0.132	0.210	0.678	0.111(1063)	0.197(138)	0.106(1849)	non tumor-specific	alt_5prime	yes
UN_C19orf44_LS0027	chr19:16518253|16518395:+	C19orf44	chromosome 19 open reading frame 44	protein coding gene	no	.	2.682	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TUBB1P1_LS002	chrY:18387634|18388128:+	TUBB1P1	tubulin beta 1 class VI pseudogene 1	pseudogene	no	ENST00000503144.1	0.595	0.000	0.623	0(1)	0(0)	0.001(14)	non tumor-specific	nAS	yes
EHD1_LS002	chr11:64854857|64855322:-	EHD1	EH domain containing 1	protein coding gene	no	ENST00000320631.7;ENST00000621096.4;ENST00000484846.1;ENST00000359393.6;ENST00000421510.5	87.052	60.388	58.120	0.989(9477)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
WDR73_LS026	chr15:84653699|84654234:-	WDR73	WD repeat domain 73	protein coding gene	no	ENST00000434634.6;ENST00000559015.5;ENST00000559224.5;ENST00000558521.5;ENST00000561329.5;ENST00000559178.5;ENST00000560252.5	3.852	3.051	8.218	0.973(9324)	0.987(693)	0.968(16823)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_RCC1_LS0071	chr1:28538013|28538093:-	RCC1	regulator of chromosome condensation 1	protein coding gene	no	.	1.995	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
EHBP1L1_LS007	chr11:65579436|65579936:+	EHBP1L1	EH domain binding protein 1 like 1	protein coding gene	no	ENST00000309295.8;ENST00000533237.5;ENST00000634639.1	43.662	31.059	58.894	0.982(9405)	0.991(696)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
NPRL2_LS007	chr3:50347901|50348527:-	NPRL2	NPR2 like, GATOR1 complex subunit	protein coding gene	yes	ENST00000493465.5;ENST00000493465.5;ENST00000493465.5	0.130	0.112	1.102	0.766(7343)	0.748(525)	0.454(7885)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC084706.1_UP_LS0007	chr8:78009231|78010690:+	AC084706.1	-	lncRNA gene	no	.	2.680	0.255	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
NDUFAF5_LS006	chr20:13793227|13798461:+	NDUFAF5	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein coding gene	no	ENST00000463598.1;ENST00000481249.5;ENST00000475968.5	9.292	5.462	4.012	0.954(9145)	0.967(679)	0.935(16246)	non tumor-specific	exon_skip	yes
UN_IQCA1_LS0012	chr2:236331597|236337396:-	IQCA1	IQ motif containing with AAA domain 1	protein coding gene	no	.	1.427	1.530	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_HLA-T_UP_LS0005	chr6:29725563|29890264:+	HLA-T	major histocompatibility complex, class I, T (pseudogene)	pseudogene	no	.	436.152	214.464	0.000	0.406(3893)	0.429(301)	0(0)	non tumor-specific	nAS	no
UN_NAP1L4_LS0016	chr11:2944834|2944865:+	NAP1L4	nucleosome assembly protein 1 like 4	protein coding gene	no	.	1.523	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
FOCAD_LS038	chr9:20912954|20916893:+	FOCAD	focadhesin	protein coding gene	no	ENST00000380249.5;ENST00000338382.10;ENST00000605086.5	17.137	12.875	13.099	0.944(9045)	0.959(673)	0.972(16896)	non tumor-specific	exon_skip	yes
NTHL1_LS012	chr16:2043726|2044630:-	NTHL1	nth like DNA glycosylase 1	protein coding gene	no	ENST00000219066.5;ENST00000565406.5;ENST00000568513.5;ENST00000561841.1;ENST00000562120.1	54.124	23.002	29.275	0.996(9540)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
GPAT2_LS018	chr2:96024843|96025485:-	GPAT2	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein coding gene	no	ENST00000486463.5;ENST00000359548.8;ENST00000434632.5;ENST00000453542.5;ENST00000484440.5;ENST00000486463.5;ENST00000359548.8;ENST00000434632.5;ENST00000453542.5;ENST00000484440.5	7.590	1.764	5.785	0.346(3311)	0.556(390)	0.917(15931)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC4A11_LS025	chr20:3237588|3238980:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	ENST00000644692.1;ENST00000474451.5	0.163	0.052	0.803	0.257(2465)	0.288(202)	0.121(2105)	non tumor-specific	alt_5prime	yes
UN_IGKJ3_UP_LS0020	chr2:88861258|89268002:-	IGKJ3	immunoglobulin kappa joining 3	no	no	.	250.065	65.016	0.000	0.022(206)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_GLIS2_LS0021	chr16:4335198|4335275:+	GLIS2	GLIS family zinc finger 2	protein coding gene	no	.	11.287	0.683	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_NKX2-2_UP_LS0007	chr20:21519655|21521697:-	NKX2-2	NK2 homeobox 2	protein coding gene	no	.	3.322	0.220	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
PQLC1_LS022	chr18:79943840|79944573:-	PQLC1	solute carrier family 66 member 2	protein coding gene	no	ENST00000494607.5	0.083	0.000	0.711	0.001(5)	0(0)	0.078(1350)	non tumor-specific	nAS	yes
ZNF442_LS005	chr19:12353114|12363554:-	ZNF442	zinc finger protein 442	protein coding gene	no	ENST00000242804.8;ENST00000545749.2	0.260	0.034	0.667	0.007(71)	0.016(11)	0.012(201)	non tumor-specific	nAS	yes
BCL2L14_LS017	chr12:12094930|12098950:+	BCL2L14	BCL2 like 14	protein coding gene	no	ENST00000589718.5;ENST00000586576.5;ENST00000308721.9;ENST00000396367.5;ENST00000266434.8	5.589	4.505	1.575	0.415(3977)	0.44(309)	0.23(3998)	non tumor-specific	nAS	yes
UPRT_LS005	chrX:75291560|75293472:+	UPRT	uracil phosphoribosyltransferase homolog	protein coding gene	no	ENST00000373373.8	0.570	0.132	0.698	0.012(112)	0.01(7)	0.035(613)	non tumor-specific	alt_5prime;exon_skip	yes
C16orf96_LS003	chr16:4574789|4574972:+	C16orf96	chromosome 16 open reading frame 96	protein coding gene	no	ENST00000444310.4	1.542	0.107	0.843	0.04(383)	0.023(16)	0.291(5056)	non tumor-specific	nAS	yes
DLGAP2_LS030	chr8:907966|1137299:+	DLGAP2	DLG associated protein 2	protein coding gene	no	ENST00000522092.5	0.477	0.003	0.781	0.002(23)	0.001(1)	0.01(173)	non tumor-specific	nAS	yes
UN_GTF3C1_LS0009	chr16:27460914|27460968:+	GTF3C1	general transcription factor IIIC subunit 1	protein coding gene	no	.	1.927	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BCL9_LS004	chr1:147606866|147611578:+	BCL9	BCL9 transcription coactivator	protein coding gene	yes	ENST00000234739.7;ENST00000497938.1	9.301	6.209	4.767	0.864(8275)	0.909(638)	0.929(16149)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF483_LS002	chr9:111527807|111530875:+	ZNF483	zinc finger protein 483	protein coding gene	no	ENST00000358151.8;ENST00000355824.7;ENST00000309235.5	1.725	1.263	2.217	0.342(3281)	0.575(404)	0.721(12528)	non tumor-specific	exon_skip	yes
ATF7IP_LS029	chr12:14475968|14478317:+	ATF7IP	activating transcription factor 7 interacting protein	protein coding gene	no	ENST00000261168.8;ENST00000543189.5;ENST00000536444.5;ENST00000544627.5;ENST00000540793.5	48.943	23.234	22.359	0.869(8328)	0.885(621)	0.979(17015)	non tumor-specific	exon_skip	yes
LINC02492_LS002	chr4:187533203|187555776:-	LINC02492	long intergenic non-protein coding RNA 2492	lncRNA gene	no	ENST00000514767.1	0.108	0.000	0.737	0.007(68)	0(0)	0.001(21)	non tumor-specific	nAS	yes
UN_SLC38A9_LS0015	chr5:55656774|55669228:-	SLC38A9	solute carrier family 38 member 9	protein coding gene	no	.	4.672	0.128	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZEB1_LS006	chr10:31319292|31373018:+	ZEB1	zinc finger E-box binding homeobox 1	protein coding gene	no	ENST00000437844.6	0.422	0.392	1.047	0.183(1756)	0.308(216)	0.464(8065)	non tumor-specific	alt_3prime;exon_skip	yes
CROCC_LS042	chr1:16954877|16955312:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000375541.9;ENST00000445545.6	7.838	4.229	16.824	0.787(7541)	0.796(559)	0.975(16949)	non tumor-specific	nAS	yes
IMPA1_LS012	chr8:81676265|81678583:-	IMPA1	inositol monophosphatase 1	protein coding gene	no	ENST00000518202.5	0.037	0.090	0.660	0.054(514)	0.074(52)	0.068(1186)	non tumor-specific	exon_skip	yes
MPPE1_LS048	chr18:11897356|11905738:-	MPPE1	metallophosphoesterase 1	protein coding gene	no	ENST00000588186.5;ENST00000588186.5;ENST00000588186.5	0.076	0.014	1.735	0.35(3353)	0.296(208)	0.623(10829)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
TBC1D26_LS022	chr17:15744452|15746078:+	TBC1D26	TBC1 domain family member 26	protein coding gene	no	ENST00000469477.3	1.593	0.000	1.087	0(3)	0(0)	0.153(2659)	non tumor-specific	nAS	yes
CCDC90B_LS013	chr11:83273738|83273951:-	CCDC90B	coiled-coil domain containing 90B	protein coding gene	no	ENST00000529073.5	0.208	0.110	0.681	0.162(1553)	0.113(79)	0.099(1720)	non tumor-specific	mutex_exons	yes
UN_MT-CO3_LS0015	chrM:9294|9343:+	MT-CO3	mitochondrially encoded cytochrome c oxidase III	protein coding gene	no	.	5836.716	58.339	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL139300.2_LS0002	chr14:103553862|103559841:+	AL139300.2	-	lncRNA gene	no	.	1.651	0.445	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
C6orf10_LS012	chr6:32323614|32330589:-	C6orf10	testis expressed basic protein 1	protein coding gene	no	ENST00000442822.6;ENST00000447241.6;ENST00000533191.5;ENST00000612031.4;ENST00000527965.5;ENST00000375007.8	3.252	0.312	0.703	0.011(104)	0.001(1)	0.012(214)	non tumor-specific	exon_skip	yes
UN_TRAK2_LS0001	chr2:201379776|201447786:-	TRAK2	trafficking kinesin protein 2	protein coding gene	no	.	1.378	0.212	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MYT1_LS0026	chr20:64171281|64190063:+	MYT1	protein kinase, membrane associated tyrosine/threonine 1	protein coding gene	no	.	2.029	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip	no
EPHB1_LS003	chr3:134615438|134627940:+	EPHB1	EPH receptor B1	protein coding gene	no	ENST00000472904.5	0.295	0.172	0.969	0.023(218)	0.023(16)	0.102(1771)	non tumor-specific	nAS	yes
PRDM2_LS024	chr1:13782831|13816427:+	PRDM2	PR/SET domain 2	protein coding gene	yes	ENST00000235372.11	3.588	3.881	7.853	0.432(4135)	0.487(342)	0.963(16742)	non tumor-specific	exon_skip	yes
UN_CDH23_LS0046	chr10:71706996|71709006:-	CDH23	cadherin related 23	protein coding gene	no	.	2.017	1.761	0.000	0.004(38)	0.01(7)	0(0)	non tumor-specific	nAS	no
CETP_LS007	chr16:56971102|56971217:+	CETP	cholesteryl ester transfer protein	protein coding gene	no	ENST00000569082.1	0.270	0.000	0.670	0.002(16)	0(0)	0.007(119)	non tumor-specific	nAS	yes
UN_KIF6_LS0021	chr6:39431161|39431287:-	KIF6	kinesin family member 6	protein coding gene	no	.	1.648	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_ADSSL1_LS0004	chr14:104733389|104735020:+	ADSSL1	adenylosuccinate synthase 1	protein coding gene	no	.	3.914	1.199	0.000	0.024(226)	0.006(4)	0(0)	non tumor-specific	nAS	no
FAM66E_LS005	chr8:7961406|7984265:+	FAM66E	family with sequence similarity 66 member E	lncRNA gene	no	ENST00000533615.1	0.889	0.000	0.635	0(1)	0(0)	0.002(40)	non tumor-specific	nAS	yes
UN_GCAT_LS0009	chr22:37815511|37815663:+	GCAT	glycine C-acetyltransferase	protein coding gene	no	.	5.728	0.236	0.000	0.012(116)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_PAXX_LS0011	chr9:136993224|136993366:-	PAXX	PAXX non-homologous end joining factor	protein coding gene	no	.	3.425	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HEMK1_LS012	chr3:50571332|50571710:+	HEMK1	HemK methyltransferase family member 1	protein coding gene	no	ENST00000434410.5;ENST00000232854.8;ENST00000455834.5	22.326	17.795	23.546	0.986(9447)	0.994(698)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FOSL2_LS0059	chr2:28412458|28412561:-	FOSL2	FOS like 2, AP-1 transcription factor subunit	protein coding gene	no	.	5.660	3.106	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPP6R3_LS011	chr11:68519651|68522494:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000530427.5;ENST00000533127.5	0.149	0.052	0.810	0.261(2502)	0.228(160)	0.321(5573)	non tumor-specific	exon_skip;mutex_exons	yes
UN_WNK2_LS0073	chr9:93299761|93308328:+	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	.	2.810	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC021086.1_LS005	chr5:100518611|100534080:-	AC021086.1	-	lncRNA gene	no	ENST00000504833.1	0.549	0.000	0.639	0.006(56)	0(0)	0.038(658)	non tumor-specific	nAS	yes
UN_PRKD3_LS0014	chr2:37274697|37275443:-	PRKD3	protein kinase D3	protein coding gene	no	.	1.448	0.460	0.000	0.005(50)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF385A_LS0081	chr12:54384957|54391235:-	ZNF385A	zinc finger protein 385A	protein coding gene	no	.	0.854	0.784	0.000	0.028(266)	0.036(25)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
CFAP100_LS018	chr3:126419156|126419637:+	CFAP100	cilia and flagella associated protein 100	protein coding gene	no	ENST00000352312.5;ENST00000505024.1	5.827	2.809	1.410	0.051(485)	0.1(70)	0.116(2024)	non tumor-specific	alt_3prime	yes
REPS2_LS016	chrX:17103779|17133824:+	REPS2	RALBP1 associated Eps domain containing 2	protein coding gene	no	ENST00000357277.7;ENST00000303843.7;ENST00000469714.1	18.515	18.426	7.004	0.867(8311)	0.95(667)	0.944(16402)	non tumor-specific	exon_skip	yes
FBXO11_LS016	chr2:47832678|47832769:-	FBXO11	F-box protein 11	protein coding gene	no	ENST00000402508.5;ENST00000403359.7;ENST00000493962.6;ENST00000492225.5	29.299	19.205	31.304	0.976(9355)	0.99(695)	0.979(17010)	non tumor-specific	nAS	yes
UN_NBPF20_UP_LS0045	chr1:145425150|145425323:-	NBPF20	NBPF member 20	protein coding gene	no	.	2.628	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRBV7-6_LS0001	chr7:142492409|142492586:+	TRBV7-6	T cell receptor beta variable 7-6	no	no	.	3.193	0.261	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC022440.1_UP_LS0011	chr5:171841205|171841298:-	AC022440.1	-	lncRNA gene	no	.	2.674	0.184	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0555	chr21:8401320|8445412:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	143.631	46.696	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UBL4A_LS0038	chrX:154485090|154485196:+	UBL4A	ubiquitin like 4A	protein coding gene	no	.	1.245	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL137847.3_UP_LS0018	chr9:83063413|83068065:+	AL137847.3	-	pseudogene	no	.	2.661	1.605	0.000	0.35(3351)	0.422(296)	0(0)	non tumor-specific	nAS	no
UN_RNF222_LS0006	chr17:8394083|8394178:-	RNF222	ring finger protein 222	protein coding gene	no	.	2.083	0.705	0.000	0.002(18)	0.009(6)	0(0)	non tumor-specific	exon_skip;intron_retention	no
PRDM4_LS006	chr12:107744661|107746275:-	PRDM4	PR/SET domain 4	protein coding gene	yes	ENST00000228437.9;ENST00000550376.5	26.703	17.023	18.292	0.971(9299)	0.99(695)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
TUBB6_LS021	chr18:12325100|12325183:+	TUBB6	tubulin beta 6 class V	protein coding gene	no	ENST00000591208.1	0.409	0.386	1.459	0.571(5470)	0.711(499)	0.581(10104)	non tumor-specific	intron_retention	yes
PLEK_LS004	chr2:68382633|68386502:+	PLEK	pleckstrin	protein coding gene	no	ENST00000234313.7	38.876	13.539	4.316	0.872(8354)	0.942(661)	0.852(14804)	non tumor-specific	exon_skip	yes
UN_UVSSA_LS0039	chr4:1380230|1380652:+	UVSSA	UV stimulated scaffold protein A	protein coding gene	no	.	0.994	0.664	0.000	0.034(329)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PRKCZ_LS039	chr1:2169604|2172055:+	PRKCZ	protein kinase C zeta	protein coding gene	no	ENST00000378567.7;ENST00000400921.6;ENST00000461106.6;ENST00000479263.5;ENST00000478770.6;ENST00000505322.5	67.029	77.417	27.254	0.982(9410)	0.984(691)	0.929(16144)	non tumor-specific	exon_skip	yes
ELP3_LS006	chr8:28093360|28097219:+	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	ENST00000520288.5	0.019	0.015	0.651	0.545(5223)	0.593(416)	0.062(1077)	non tumor-specific	alt_5prime	yes
UN_CASC9_UP_LS0028	chr8:76133209|76162961:-	CASC9	cancer susceptibility 9	lncRNA gene	no	.	0.925	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LINC02306_LS002	chr14:25837211|25838460:-	LINC02306	long intergenic non-protein coding RNA 2306	lncRNA gene	no	ENST00000546412.2	2.652	0.093	0.988	0.014(137)	0.019(13)	0.035(614)	non tumor-specific	nAS	yes
PIP4K2C_LS015	chr12:57601078|57601245:+	PIP4K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein coding gene	no	ENST00000422156.7;ENST00000540759.6;ENST00000550465.5;ENST00000354947.9	52.003	40.604	27.462	0.985(9436)	0.993(697)	0.979(17015)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01501_LS005	chr9:90507340|90508799:-	LINC01501	long intergenic non-protein coding RNA 1501	lncRNA gene	no	ENST00000449990.1	2.344	0.000	0.923	0.002(21)	0(0)	0.035(605)	non tumor-specific	nAS	yes
UN_RNU7-22P_UP_LS0002	chr10:32137295|32149166:+	RNU7-22P	RNA, U7 small nuclear 22 pseudogene	small non-coding RNA gene	no	.	1.382	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC079250.1_LS0028	chr2:47691090|47691113:-	AC079250.1	-	pseudogene	no	.	10.800	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC006453.1_UP_LS0253	chr2:90115314|90173327:-	AC006453.1	-	pseudogene	no	.	2.519	0.273	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
CR1L_LS012	chr1:207701618|207708178:+	CR1L	complement C3b/C4b receptor 1 like	protein coding gene	no	ENST00000508064.6	3.874	0.443	0.741	0.015(148)	0.017(12)	0.049(857)	non tumor-specific	exon_skip	yes
UN_SLC7A8_LS0014	chr14:23125873|23126991:+	SLC7A8	solute carrier family 7 member 8	protein coding gene	no	.	2.050	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL8_UP_LS0022	chr8:144817819|144825313:-	RPL8	ribosomal protein L8	protein coding gene	no	.	1.053	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HADH_LS022	chr4:108028069|108033176:+	HADH	hydroxyacyl-CoA dehydrogenase	protein coding gene	no	ENST00000639146.1;ENST00000640201.1;ENST00000515462.6;ENST00000510728.5	0.652	0.574	3.248	0.908(8703)	0.946(664)	0.864(15024)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
EHMT1_LS004	chr9:137619049|137710967:+	EHMT1	euchromatic histone lysine methyltransferase 1	protein coding gene	no	ENST00000460843.5;ENST00000462484.5;ENST00000629335.2	9.412	6.498	7.264	0.941(9019)	0.974(684)	0.967(16805)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
DHRS1_LS001	chr14:24290995|24291139:-	DHRS1	dehydrogenase/reductase 1	protein coding gene	no	ENST00000561281.4;ENST00000559088.5;ENST00000288111.11;ENST00000561137.5;ENST00000396813.5;ENST00000558340.1;ENST00000561273.5	59.417	57.916	48.782	0.958(9179)	0.967(679)	0.979(17014)	non tumor-specific	alt_3prime;intron_retention	yes
MGAT1_LS015	chr5:180793097|180808648:-	MGAT1	monoacylglycerol O-acyltransferase 1	protein coding gene	no	ENST00000333055.8;ENST00000446023.6;ENST00000393340.7;ENST00000506889.1;ENST00000333055.8;ENST00000446023.6;ENST00000393340.7;ENST00000506889.1	23.958	18.110	27.873	0.969(9281)	0.976(685)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AC015813.8_LS0001	chr17:58052049|58052943:-	AC015813.8	-	lncRNA gene	no	.	3.150	0.370	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
PLEKHA7_LS016	chr11:16789878|16791011:-	PLEKHA7	pleckstrin homology domain containing A7	protein coding gene	no	.;.	0.874	1.094	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DROSHA_LS0006	chr5:31409159|31410746:-	DROSHA	drosha ribonuclease III	protein coding gene	no	.	5.183	0.503	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NME3_LS005	chr16:1770993|1771280:-	NME3	NME/NM23 nucleoside diphosphate kinase 3	protein coding gene	no	.;.	24.081	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
NT5M_LS014	chr17:17344926|17345256:+	NT5M	5',3'-nucleotidase, mitochondrial	protein coding gene	no	.;.	1.353	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CCAR1_LS0003	chr10:68721670|68722455:+	CCAR1	cell division cycle and apoptosis regulator 1	protein coding gene	yes	.	1.478	0.232	0.000	0.009(83)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
PLCL2_LS002	chr3:16885366|17009674:+	PLCL2	phospholipase C like 2	protein coding gene	no	ENST00000615277.4	1.859	2.613	4.325	0.679(6510)	0.877(616)	0.903(15692)	non tumor-specific	nAS	yes
POTEI_LS009	chr2:130488198|130496552:-	POTEI	POTE ankyrin domain family member I	protein coding gene	no	ENST00000631234.1	2.585	0.059	0.732	0.015(148)	0.003(2)	0.002(33)	non tumor-specific	nAS	yes
UN_SYTL1_LS0004	chr1:27342947|27345297:+	SYTL1	synaptotagmin like 1	protein coding gene	no	.	5.468	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NADSYN1_LS0009	chr11:71463485|71464033:+	NADSYN1	NAD synthetase 1	protein coding gene	no	.	5.313	0.118	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PPP4R2_LS009	chr3:73061060|73063673:+	PPP4R2	protein phosphatase 4 regulatory subunit 2	protein coding gene	no	ENST00000356692.9;ENST00000482242.5	34.238	23.209	16.603	0.966(9255)	0.987(693)	0.978(16992)	non tumor-specific	exon_skip	yes
UN_AFDN_LS0008	chr6:167863801|167864551:+	AFDN	afadin, adherens junction formation factor	protein coding gene	no	.	0.860	0.484	0.000	0.003(30)	0.009(6)	0(0)	non tumor-specific	nAS	no
PTCH1_LS012	chr9:95461998|95467116:-	PTCH1	patched 1	protein coding gene	yes	ENST00000331920.10;ENST00000418258.5;ENST00000421141.5;ENST00000437951.5;ENST00000375290.6;ENST00000430669.6;ENST00000429896.6;ENST00000375274.6	10.229	8.470	7.619	0.72(6901)	0.905(635)	0.946(16435)	non tumor-specific	nAS	yes
UN_BNC2_LS0052	chr9:16738485|16832230:-	BNC2	basonuclin 2	protein coding gene	no	.	0.995	0.487	0.000	0.008(74)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ACSL3_LS0035	chr2:222924595|222941497:+	ACSL3	acyl-CoA synthetase long chain family member 3	protein coding gene	no	.	7.468	0.296	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCBP2_LS0009	chr3:196937082|196937172:-	NCBP2	nuclear cap binding protein subunit 2	protein coding gene	no	.	16.194	2.085	0.000	0.025(235)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AADACP1_LS004	chr3:151770611|151783832:+	AADACP1	arylacetamide deacetylase pseudogene 1	pseudogene	no	ENST00000463420.1	0.676	0.733	0.828	0.261(2498)	0.395(277)	0.157(2737)	non tumor-specific	nAS	yes
FRMD4B_LS025	chr3:69250099|69287752:-	FRMD4B	FERM domain containing 4B	protein coding gene	no	ENST00000398540.7;ENST00000470070.6;ENST00000493880.5;ENST00000473029.5;ENST00000460709.5	4.040	4.743	3.984	0.645(6184)	0.852(598)	0.828(14391)	non tumor-specific	exon_skip	yes
UN_PPIL1_UP_LS0002	chr6:36935960|36940116:-	PPIL1	peptidylprolyl isomerase like 1	protein coding gene	no	.	2.926	0.277	0.000	0.009(82)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PLEKHS1_LS0029	chr10:113781194|113781507:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	2.760	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01358_LS027	chr1:59132581|59184431:+	LINC01358	long intergenic non-protein coding RNA 1358	lncRNA gene	no	ENST00000625548.1	0.676	0.000	0.694	0.001(11)	0(0)	0.015(266)	non tumor-specific	nAS	yes
UN_AC022905.1_LS0021	chr8:72247561|72251455:-	AC022905.1	-	pseudogene	no	.	2.958	0.203	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
FAM3B_LS011	chr21:41344534|41345686:+	FAM3B	FAM3 metabolism regulating signaling molecule B	protein coding gene	no	ENST00000479810.6;ENST00000518236.1;ENST00000357985.6;ENST00000398652.7;ENST00000398647.7;ENST00000398646.3	56.305	82.808	3.378	0.7(6708)	0.916(643)	0.691(12015)	non tumor-specific	exon_skip	yes
GABRP_LS005	chr5:170765382|170788574:+	GABRP	gamma-aminobutyric acid type A receptor subunit pi	protein coding gene	no	ENST00000519196.5	0.398	0.097	0.877	0.107(1028)	0.246(173)	0.075(1298)	non tumor-specific	exon_skip	yes
UN_AL162399.1_UP_LS0016	chr1:170967097|171168104:-	AL162399.1	-	lncRNA gene	no	.	3.523	0.161	0.000	0.011(107)	0.006(4)	0(0)	non tumor-specific	nAS	no
MICALL2_LS023	chr7:1438220|1438840:-	MICALL2	MICAL like 2	protein coding gene	no	.;.;.	1.316	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GSPT1_LS0004	chr16:11872818|11872938:+	GSPT1	G1 to S phase transition 1	protein coding gene	no	.	1.086	0.113	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALKBH3_LS007	chr11:43884017|43886609:+	ALKBH3	alkB homolog 3, alpha-ketoglutarate dependent dioxygenase	protein coding gene	no	ENST00000530803.5;ENST00000529366.5	0.314	0.239	1.302	0.704(6747)	0.719(505)	0.715(12420)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAP3K13_LS0050	chr3:185417626|185417717:-	MAP3K13	mitogen-activated protein kinase kinase kinase 13	protein coding gene	no	.	93.777	2.858	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ANKRD44_LS0036	chr2:197198501|197198918:+	ANKRD44	ankyrin repeat domain 44	protein coding gene	no	.	2.966	0.066	0.000	0.009(82)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HIST1H2AJ_UP_LS0054	chr6:27828436|27831068:-	HIST1H2AJ	H2A clustered histone 14	protein coding gene	no	.	1.253	0.194	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HEATR5B_LS0045	chr2:37081750|37083289:-	HEATR5B	HEAT repeat containing 5B	protein coding gene	no	.	2.126	0.162	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
C2CD3_LS001	chr11:74013525|74016599:-	C2CD3	C2 domain containing 3 centriole elongation regulator	protein coding gene	no	ENST00000542452.1	0.134	0.165	1.019	0.286(2740)	0.283(199)	0.415(7209)	non tumor-specific	exon_skip;mutex_exons	yes
AC068631.1_LS012	chr3:186651871|186666968:-	AC068631.1	-	lncRNA gene	no	ENST00000630864.2	1.480	0.000	0.734	0.001(11)	0(0)	0(4)	non tumor-specific	nAS	yes
MKLN1_LS007	chr7:131327997|131387120:+	MKLN1	muskelin 1	protein coding gene	no	ENST00000446815.5	0.057	0.000	0.614	0.03(291)	0.021(15)	0.021(366)	non tumor-specific	exon_skip	yes
SHISA3_LS001	chr4:42398333|42401012:+	SHISA3	shisa family member 3	protein coding gene	yes	ENST00000319234.4	1.974	12.839	4.733	0.475(4549)	0.746(524)	0.769(13362)	non tumor-specific	nAS	yes
CLDN1_LS004	chr3:190310253|190312872:-	CLDN1	claudin 1	protein coding gene	yes	ENST00000295522.3;ENST00000490800.1;ENST00000295522.3;ENST00000490800.1	117.344	59.400	4.358	0.911(8725)	0.979(687)	0.768(13355)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM10_LS011	chr15:58633359|58640777:-	ADAM10	ADAM metallopeptidase domain 10	protein coding gene	no	ENST00000260408.7;ENST00000402627.5;ENST00000396136.6;ENST00000559053.1	77.829	50.185	18.893	0.955(9152)	0.984(691)	0.978(16995)	non tumor-specific	nAS	yes
UN_USP43_LS0018	chr17:9693230|9709956:+	USP43	ubiquitin specific peptidase 43	protein coding gene	no	.	2.861	0.279	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SNX25_LS003	chr4:185247378|185258848:+	SNX25	sorting nexin 25	protein coding gene	no	ENST00000618785.4;ENST00000504273.5;ENST00000264694.12;ENST00000506896.1	5.211	5.580	6.116	0.903(8651)	0.973(683)	0.944(16412)	non tumor-specific	exon_skip	yes
PPM1K_LS001	chr4:88262726|88265001:-	PPM1K	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein coding gene	no	ENST00000608933.5;ENST00000508256.5	14.128	15.345	11.928	0.869(8328)	0.949(666)	0.968(16833)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CACNA2D3_LS036	chr3:54969844|54984608:+	CACNA2D3	calcium voltage-gated channel auxiliary subunit alpha2delta 3	protein coding gene	yes	ENST00000415676.6;ENST00000288197.9;ENST00000474759.5;ENST00000620722.4;ENST00000490478.5;ENST00000471363.5	3.553	2.051	3.602	0.394(3779)	0.443(311)	0.865(15030)	non tumor-specific	exon_skip	yes
P2RX7_LS014	chr12:121165437|121166058:+	P2RX7	purinergic receptor P2X 7	protein coding gene	no	ENST00000537312.5;ENST00000328963.9;ENST00000539695.5;ENST00000545434.5;ENST00000261826.10;ENST00000535250.5;ENST00000539606.5;ENST00000541716.5;ENST00000541022.5;ENST00000541564.5;ENST00000538011.5	8.230	2.932	4.809	0.585(5608)	0.692(486)	0.874(15200)	non tumor-specific	alt_3prime;exon_skip	yes
DAP3_LS012	chr1:155717128|155725382:+	DAP3	DLG associated protein 3	protein coding gene	no	ENST00000421487.6	0.306	0.255	5.153	0.981(9399)	0.983(690)	0.959(16674)	non tumor-specific	exon_skip	yes
UN_TRIM8_LS0034	chr10:102644492|102644521:-	TRIM8	tripartite motif containing 8	protein coding gene	yes	.	1.259	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC25_LS001	chr19:18392125|18396185:-	LRRC25	leucine rich repeat containing 25	protein coding gene	no	ENST00000339007.3;ENST00000595840.1	10.686	6.534	4.474	0.922(8838)	0.934(656)	0.852(14807)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CSNK1A1_LS0035	chr5:149520388|149550075:-	CSNK1A1	casein kinase 1 alpha 1	protein coding gene	yes	.	2.328	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
DNAJA3_LS006	chr16:4434102|4434384:+	DNAJA3	DnaJ heat shock protein family (Hsp40) member A3	protein coding gene	yes	ENST00000572139.5	0.148	0.056	0.654	0.127(1215)	0.121(85)	0.054(932)	non tumor-specific	nAS	yes
ERMARD_LS016	chr6:169754032|169755288:+	ERMARD	ER membrane associated RNA degradation	protein coding gene	no	ENST00000592367.5;ENST00000592315.5	0.285	0.308	1.917	0.771(7385)	0.816(573)	0.833(14479)	non tumor-specific	alt_3prime;exon_skip	yes
NBPF1_LS003	chr1:16564918|16565633:-	NBPF1	NBPF member 1	protein coding gene	no	ENST00000430580.6;ENST00000392963.5	17.666	17.230	26.928	0.898(8601)	0.933(655)	0.965(16767)	non tumor-specific	alt_5prime	yes
LINC00869_LS007	chr1:149647064|149647381:+	LINC00869	long intergenic non-protein coding RNA 869	pseudogene	no	ENST00000610297.1	5.005	2.109	2.281	0.944(9043)	0.949(666)	0.817(14200)	non tumor-specific	nAS	yes
UN_SCN3A_LS0011	chr2:165107032|165112885:-	SCN3A	sodium voltage-gated channel alpha subunit 3	protein coding gene	no	.	6.460	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
ATAD2B_LS028	chr2:23857503|23863381:-	ATAD2B	ATPase family AAA domain containing 2B	protein coding gene	no	ENST00000238789.9;ENST00000366438.3	3.250	1.296	2.713	0.592(5674)	0.674(473)	0.856(14871)	non tumor-specific	exon_skip	yes
TTN_LS106	chr2:178615788|178616479:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5	2.557	4.756	0.990	0.004(40)	0.02(14)	0.329(5718)	non tumor-specific	intron_retention	yes
MYRFL_LS017	chr12:69932598|69936113:+	MYRFL	myelin regulatory factor like	protein coding gene	no	ENST00000552032.6;ENST00000548892.5;ENST00000535034.5	1.853	1.136	0.893	0.098(938)	0.07(49)	0.135(2342)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FSTL1_LS0021	chr3:120396523|120396721:+	FSTL1	follistatin like 1	protein coding gene	no	.	1.387	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNT11_LS0046	chr11:76206955|76210347:-	WNT11	Wnt family member 11	protein coding gene	yes	.	1.366	0.211	0.000	0.014(136)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TATDN1_LS026	chr8:124516030|124518818:-	TATDN1	TatD DNase domain containing 1	protein coding gene	no	ENST00000276692.10;ENST00000523214.5;ENST00000519548.5;ENST00000522810.5;ENST00000519776.5;ENST00000521546.5;ENST00000605953.5;ENST00000519232.5;ENST00000523888.5;ENST00000276692.10;ENST00000523214.5;ENST00000519548.5;ENST00000522810.5;ENST00000519776.5;ENST00000521546.5;ENST00000605953.5;ENST00000519232.5;ENST00000523888.5	62.811	36.458	30.142	0.994(9528)	0.997(700)	0.974(16938)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CYBC1_LS0005	chr17:82442866|82442943:+	CYBC1	cytochrome b-245 chaperone 1	protein coding gene	no	.	2.834	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SLC22A5_LS023	chr5:132389021|132390690:+	SLC22A5	solute carrier family 22 member 5	protein coding gene	no	ENST00000245407.7;ENST00000435065.6;ENST00000461013.5;ENST00000479605.5;ENST00000245407.7;ENST00000435065.6;ENST00000461013.5;ENST00000479605.5;ENST00000245407.7;ENST00000435065.6;ENST00000461013.5;ENST00000479605.5	15.649	16.004	10.593	0.953(9133)	0.977(686)	0.966(16790)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SNU13_LS009	chr22:41682587|41688794:-	SNU13	small nuclear ribonucleoprotein 13	protein coding gene	no	ENST00000648674.1;ENST00000648350.1	16.896	8.482	1.258	0.772(7392)	0.699(491)	0.675(11740)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
MEFV_LS004	chr16:3243892|3246525:-	MEFV	MEFV innate immuity regulator, pyrin	protein coding gene	yes	ENST00000570511.5;ENST00000574583.5	0.323	0.009	0.749	0.003(24)	0.001(1)	0.015(257)	non tumor-specific	exon_skip	yes
UN_IKBKE_LS0005	chr1:206474994|206476066:+	IKBKE	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein coding gene	yes	.	1.816	0.064	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC108064.1_UP_LS0016	chr4:173095513|173114945:-	AC108064.1	-	pseudogene	no	.	1.503	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CD200_LS004	chr3:112333224|112335943:+	CD200	CD200 molecule	protein coding gene	no	ENST00000473539.5	0.699	0.348	1.269	0.42(4026)	0.514(361)	0.444(7716)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NR6A1_LS001	chr9:124522793|124524721:-	NR6A1	nuclear receptor subfamily 6 group A member 1	protein coding gene	no	ENST00000487099.6;ENST00000373584.7;ENST00000416460.6;ENST00000344523.8	3.197	1.141	1.371	0.45(4308)	0.433(304)	0.61(10595)	non tumor-specific	alt_3prime	yes
LRRTM3_LS004	chr10:67013026|67015273:+	LRRTM3	leucine rich repeat transmembrane neuronal 3	protein coding gene	no	ENST00000472278.1	0.152	0.000	0.672	0.001(7)	0(0)	0.002(43)	non tumor-specific	nAS	yes
TUBB8P10_LS003	chr1:227494824|227495086:-	TUBB8P10	tubulin beta 8 class VIII pseudogene 10	pseudogene	no	ENST00000430210.1	2.090	0.000	0.741	0.001(6)	0(0)	0.001(12)	non tumor-specific	nAS	yes
UN_ENAM_LS0044	chr4:70679277|70681499:+	ENAM	enamelin	protein coding gene	no	.	7.729	1.951	0.000	0.02(195)	0.088(62)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LTBP3_LS0066	chr11:65545394|65546442:-	LTBP3	latent transforming growth factor beta binding protein 3	protein coding gene	no	.	2.079	0.009	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
CWH43_LS015	chr4:49032715|49038036:+	CWH43	cell wall biogenesis 43 C-terminal homolog	protein coding gene	no	ENST00000226432.8;ENST00000514053.6;ENST00000513409.1;ENST00000226432.8;ENST00000514053.6;ENST00000513409.1	18.904	23.796	17.490	0.283(2712)	0.658(462)	0.308(5361)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GPD2_UP_LS0006	chr2:155408072|155473242:+	GPD2	glycerol-3-phosphate dehydrogenase 2	protein coding gene	no	.	4.595	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC092969.1_LS0014	chr3:135379847|135421248:-	AC092969.1	-	lncRNA gene	no	.	3.308	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ENOX1_LS0024	chr13:43412050|43412845:-	ENOX1	ecto-NOX disulfide-thiol exchanger 1	protein coding gene	no	.	2.210	0.735	0.000	0.008(79)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MOSPD3_LS0015	chr7:100612824|100612976:+	MOSPD3	motile sperm domain containing 3	protein coding gene	no	.	2.893	0.595	0.000	0.053(507)	0.057(40)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_EPB41L4A_LS0015	chr5:112161295|112161682:+	EPB41L4A	erythrocyte membrane protein band 4.1 like 4A	protein coding gene	no	.	54.313	1.650	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TPTE2P5_LS0043	chr13:40881036|40921474:-	TPTE2P5	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5	pseudogene	no	.	1.645	0.395	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ABCA5_LS0037	chr17:69297359|69297925:-	ABCA5	ATP binding cassette subfamily A member 5	protein coding gene	no	.	0.503	0.011	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PATZ1_LS007	chr22:31341683|31342897:-	PATZ1	POZ/BTB and AT hook containing zinc finger 1	protein coding gene	yes	ENST00000465287.1;ENST00000215919.3	50.125	27.256	12.600	0.98(9394)	0.99(695)	0.977(16978)	non tumor-specific	alt_5prime;exon_skip	yes
KIAA0825_LS003	chr5:94386404|94391535:-	KIAA0825	KIAA0825	protein coding gene	no	ENST00000513200.7	2.862	1.124	1.095	0.082(790)	0.177(124)	0.58(10090)	non tumor-specific	nAS	yes
UN_HTT_LS0064	chr4:3212709|3213490:+	HTT	solute carrier family 6 member 4	protein coding gene	no	.	0.632	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AKAP13_LS0006	chr15:85413692|85415112:+	AKAP13	A-kinase anchoring protein 13	protein coding gene	yes	.	1.167	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PRKAG3_LS004	chr2:218824576|218826928:-	PRKAG3	protein kinase AMP-activated non-catalytic subunit gamma 3	protein coding gene	no	ENST00000439262.6;ENST00000233944.7;ENST00000529249.5;ENST00000470307.6	4.049	4.596	1.234	0.023(217)	0.033(23)	0.182(3166)	non tumor-specific	alt_5prime	yes
UN_YTHDC1_LS0050	chr4:68337448|68337572:-	YTHDC1	YTH domain containing 1	protein coding gene	no	.	7.266	0.794	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_AP003498.2_UP_LS0006	chr11:71648817|71714375:+	AP003498.2	-	lncRNA gene	no	.	0.361	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPS15L1_LS0016	chr19:16377254|16392304:-	EPS15L1	epidermal growth factor receptor pathway substrate 15 like 1	protein coding gene	no	.	2.926	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_COL18A1_LS0232	chr21:45512632|45512810:-	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	3.258	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
KCTD9_LS006	chr8:25436485|25439279:-	KCTD9	potassium channel tetramerization domain containing 9	protein coding gene	no	ENST00000221200.8;ENST00000519665.5;ENST00000523140.5;ENST00000522493.5	20.903	21.734	22.932	0.947(9074)	0.977(686)	0.974(16930)	non tumor-specific	alt_3prime;exon_skip	yes
PRR7-AS1_LS003	chr5:177442960|177443303:-	PRR7-AS1	PRR7 antisense RNA 1	lncRNA gene	no	ENST00000514846.1	0.915	0.000	0.654	0.003(26)	0(0)	0.006(99)	non tumor-specific	nAS	yes
MLLT6_LS024	chr17:38719583|38719750:+	MLLT6	MLLT6, PHD finger containing	protein coding gene	no	ENST00000621332.4;ENST00000615858.1;ENST00000619356.1	64.929	52.952	88.211	0.99(9483)	0.991(696)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FAR2_LS001	chr12:29149407|29151396:+	FAR2	fatty acyl-CoA reductase 2	protein coding gene	no	ENST00000550541.1	0.240	0.079	0.696	0.358(3427)	0.343(241)	0.084(1457)	non tumor-specific	exon_skip	yes
UN_TRIM28_LS0213	chr19:58550035|58550153:+	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	149.421	8.204	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_FARP2_LS0045	chr2:241466389|241468140:+	FARP2	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein coding gene	no	.	1.218	0.081	0.000	0.017(164)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_TASP1_LS0019	chr20:13534141|13569507:-	TASP1	taspase 1	protein coding gene	no	.	2.253	0.106	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CLCN7_LS032	chr16:1465338|1474834:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	ENST00000382745.8;ENST00000567139.1	4.414	2.835	21.973	0.964(9236)	0.976(685)	0.978(17001)	non tumor-specific	exon_skip	yes
ENDOV_LS014	chr17:80415821|80418442:+	ENDOV	endonuclease V	protein coding gene	no	.;.	3.286	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TVP23C-CDRT4_LS0072	chr17:15531842|15540433:-	TVP23C-CDRT4	TVP23C-CDRT4 readthrough	protein coding gene	no	.	1.306	0.376	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	nAS	no
NAA16_LS005	chr13:41318910|41320667:+	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	protein coding gene	no	ENST00000379406.7;ENST00000403412.7;ENST00000476980.5;ENST00000464857.5	6.778	3.897	5.902	0.806(7723)	0.89(625)	0.944(16415)	non tumor-specific	nAS	yes
DDX18_LS019	chr2:117829466|117830582:+	DDX18	DEAD-box helicase 18	protein coding gene	no	ENST00000263239.6;ENST00000476149.1	87.674	45.749	44.432	0.971(9301)	0.98(688)	0.979(17020)	non tumor-specific	alt_3prime	yes
CBLN2_LS012	chr18:72620590|72625156:-	CBLN2	cerebellin 2 precursor	protein coding gene	no	ENST00000582667.1	0.296	0.000	0.625	0(2)	0(0)	0.001(12)	non tumor-specific	nAS	yes
AC092535.3_LS001	chr4:1113752|1132329:+	AC092535.3	-	lncRNA gene	no	ENST00000504969.1	0.694	0.000	0.686	0.001(9)	0(0)	0.058(1008)	non tumor-specific	nAS	yes
UN_ORC2_LS0019	chr2:200937966|200940472:-	ORC2	origin recognition complex subunit 2	protein coding gene	no	.	1.834	0.068	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MAPK13_LS005	chr6:36132679|36135753:+	MAPK13	mitogen-activated protein kinase 13	protein coding gene	no	ENST00000476951.5;ENST00000211287.8;ENST00000373766.9;ENST00000373759.1;ENST00000490334.1	51.998	41.561	17.022	0.955(9151)	0.959(673)	0.959(16676)	non tumor-specific	alt_3prime;exon_skip	yes
PTPN13_LS050	chr4:86807897|86809769:+	PTPN13	protein tyrosine phosphatase non-receptor type 13	protein coding gene	yes	ENST00000427191.6;ENST00000436978.5;ENST00000316707.10;ENST00000411767.6;ENST00000511467.1	48.212	47.431	39.174	0.906(8680)	0.949(666)	0.954(16584)	non tumor-specific	nAS	yes
RPP30_LS016	chr10:90895483|90895880:+	RPP30	ribonuclease P/MRP subunit p30	protein coding gene	no	ENST00000371703.7;ENST00000413330.5;ENST00000487998.5;ENST00000277882.7;ENST00000480406.6;ENST00000489806.5	60.045	28.329	34.008	0.996(9539)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
PRKCQ-AS1_LS016	chr10:6591134|6615370:+	PRKCQ-AS1	PRKCQ antisense RNA 1	lncRNA gene	no	ENST00000623160.3	0.080	0.012	0.751	0.002(22)	0.004(3)	0.029(508)	non tumor-specific	nAS	yes
UN_CDK2AP2_LS0043	chr11:67506950|67507612:+	CDK2AP2	cyclin dependent kinase 2 associated protein 2	protein coding gene	no	.	3.987	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PBX2_LS0035	chr6:32189738|32189856:-	PBX2	PBX homeobox 2 pseudogene 1	protein coding gene	yes	.	3.270	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PATJ_LS0098	chr1:62128945|62129522:+	PATJ	PATJ crumbs cell polarity complex component	protein coding gene	no	.	0.585	0.156	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SYNE2_LS132	chr14:64210124|64211961:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000394768.6;ENST00000555612.5;ENST00000553289.5;ENST00000555022.5;ENST00000554805.6;ENST00000554997.1	53.288	51.638	49.666	0.983(9414)	0.994(698)	0.978(16991)	non tumor-specific	exon_skip	yes
CFAP36_LS011	chr2:55535763|55543964:+	CFAP36	cilia and flagella associated protein 36	protein coding gene	no	.;.	29.523	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MTHFD1L_LS0018	chr6:150898954|150905648:+	MTHFD1L	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein coding gene	no	.	10.376	0.301	0.000	0.012(116)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GAS6_LS0176	chr13:113846589|113847878:-	GAS6	growth arrest specific 6	protein coding gene	no	.	3.874	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_SFXN4_LS0012	chr10:119154174|119155062:-	SFXN4	sideroflexin 4	protein coding gene	no	.	1.374	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC135983.3_UP_LS0008	chr15:32518445|32522448:-	AC135983.3	-	pseudogene	no	.	5.100	2.008	0.000	0.254(2437)	0.275(193)	0(0)	non tumor-specific	nAS	no
ALS2CL_LS041	chr3:46681598|46682029:-	ALS2CL	ALS2 C-terminal like	protein coding gene	no	ENST00000318962.8;ENST00000434140.5;ENST00000415953.5;ENST00000450172.5;ENST00000423707.5	6.441	7.007	16.152	0.687(6585)	0.929(652)	0.933(16220)	non tumor-specific	alt_3prime;intron_retention	yes
UN_NDE1_LS0006	chr16:15664276|15664736:+	NDE1	nudE neurodevelopment protein 1	protein coding gene	no	.	1.303	0.109	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
RUNX1T1_LS008	chr8:91991889|91994487:-	RUNX1T1	RUNX1 partner transcriptional co-repressor 1	protein coding gene	yes	ENST00000520978.5	0.194	0.053	0.689	0.019(181)	0.068(48)	0.129(2245)	non tumor-specific	exon_skip	yes
UN_PPP6R3_LS0002	chr11:68460827|68461627:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	.	2.925	0.440	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_COL4A2_LS0054	chr13:110480369|110482558:-	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	.	28.501	3.709	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
MIR503HG_LS003	chrX:134544797|134545465:-	MIR503HG	MIR503 host gene	lncRNA gene	no	ENST00000457876.5	0.565	0.242	0.916	0.216(2073)	0.188(132)	0.213(3699)	non tumor-specific	nAS	yes
ANO1_LS028	chr11:70161733|70163283:+	ANO1	anoctamin 1	protein coding gene	no	ENST00000355303.9;ENST00000316296.9;ENST00000530676.5;ENST00000531349.5	16.740	17.236	16.115	0.838(8030)	0.974(684)	0.855(14867)	non tumor-specific	exon_skip	yes
UN_PIBF1_LS0034	chr13:72915696|72917076:+	PIBF1	progesterone immunomodulatory binding factor 1	protein coding gene	no	.	2.482	0.150	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PSMB8-AS1_UP_LS0016	chr6:32641385|32741506:+	PSMB8-AS1	PSMB8 antisense RNA 1 (head to head)	lncRNA gene	no	.	26.612	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TNFSF8_LS004	chr9:114918138|114930109:-	TNFSF8	TNF superfamily member 8	protein coding gene	no	ENST00000618336.4;ENST00000223795.2	2.678	1.317	1.545	0.561(5373)	0.67(470)	0.544(9458)	non tumor-specific	nAS	yes
PLCG2_LS044	chr16:81938551|81938801:+	PLCG2	phospholipase C gamma 2	protein coding gene	no	ENST00000563834.1	0.027	0.072	0.733	0.331(3169)	0.453(318)	0.069(1196)	non tumor-specific	nAS	yes
UN_CDK10_LS0006	chr16:89682795|89686428:-	CDK10	cyclin dependent kinase 10	protein coding gene	no	.	2.911	0.427	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SOX5_LS0026	chr12:24106658|24107175:+	SOX5	SRY-box transcription factor 5	protein coding gene	no	.	3.720	0.614	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCNN1A_LS035	chr12:6374788|6375505:-	SCNN1A	sodium channel epithelial 1 subunit alpha	protein coding gene	no	.;.	4.527	1.731	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_NPM1P33_UP_LS0028	chr2:204145459|204150677:-	NPM1P33	nucleophosmin 1 pseudogene 33	pseudogene	no	.	3.803	0.916	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC131097.1_UP_LS0067	chr2:241806442|241808037:-	AC131097.1	-	lncRNA gene	no	.	1.588	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRNIP_LS0027	chr5:179853437|179857710:-	MRNIP	MRN complex interacting protein	protein coding gene	no	.	0.584	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRPF40A_LS015	chr2:152670381|152671273:-	PRPF40A	pre-mRNA processing factor 40 homolog A	protein coding gene	no	ENST00000410080.6;ENST00000648940.1	74.680	36.303	38.519	0.983(9422)	0.99(695)	0.979(17015)	non tumor-specific	nAS	yes
UN_AL390726.6_LS0008	chr9:38467616|38469847:+	AL390726.6	-	pseudogene	no	.	6.337	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CPN1_LS0004	chr10:100057152|100063631:-	CPN1	cytochrome P450 family 11 subfamily B member 1	protein coding gene	no	.	14.914	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ZNF416_LS0008	chr19:57573701|57578057:-	ZNF416	zinc finger protein 416	protein coding gene	no	.	1.372	0.557	0.000	0.007(67)	0.006(4)	0(0)	non tumor-specific	nAS	no
LDLRAD4_LS005	chr18:13382727|13387341:+	LDLRAD4	low density lipoprotein receptor class A domain containing 4	protein coding gene	no	ENST00000586222.1	0.379	0.384	0.821	0.464(4441)	0.637(447)	0.306(5323)	non tumor-specific	nAS	yes
UN_PRMT1_LS0028	chr19:49686726|49686930:+	PRMT1	protein arginine methyltransferase 1	protein coding gene	no	.	27.703	2.550	0.000	0.014(132)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
TRAF3IP2_LS011	chr6:111572983|111573521:-	TRAF3IP2	TRAF3 interacting protein 2	protein coding gene	no	ENST00000368731.6	1.094	0.206	1.232	0.22(2106)	0.235(165)	0.353(6139)	non tumor-specific	nAS	yes
TRIP10_LS003	chr19:6739785|6741010:+	TRIP10	thyroid hormone receptor interactor 10	protein coding gene	no	ENST00000313285.12;ENST00000600677.5;ENST00000313244.13;ENST00000595305.5;ENST00000596758.5	19.408	16.422	53.770	0.975(9345)	0.987(693)	0.969(16840)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC247036.1_UP_LS0110	chr14:106005307|106062362:+	AC247036.1	-	lncRNA gene	no	.	7.503	2.888	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC51A_LS019	chr3:196228920|196229915:+	SLC51A	solute carrier family 51 subunit alpha	protein coding gene	no	ENST00000296327.9;ENST00000475672.5;ENST00000484407.5;ENST00000471430.1	6.841	24.277	1.904	0.652(6251)	0.779(547)	0.43(7467)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FAM114A1_LS0015	chr4:38905823|38908592:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	.	5.303	2.074	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FOXL1_LS0007	chr16:86576454|86578508:+	FOXL1	forkhead box L1	protein coding gene	no	.	1.269	0.067	0.000	0.025(239)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
MIR22HG_LS006	chr17:1712904|1713703:-	MIR22HG	MIR22 host gene	lncRNA gene	no	ENST00000609398.5;ENST00000609442.5	0.020	0.134	1.839	0.648(6210)	0.848(595)	0.727(12637)	non tumor-specific	nAS	yes
AHNAK_LS059	chr11:62522334|62523325:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.;.	5.260	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention;mutex_exons	yes
AMBN_LS004	chr4:70598403|70599536:+	AMBN	ameloblastin	protein coding gene	no	ENST00000322937.10;ENST00000613447.4;ENST00000449493.2	23.515	0.000	2.113	0.01(95)	0(0)	0.041(704)	non tumor-specific	nAS	yes
CST2_LS002	chr20:23825323|23826433:-	CST2	cystatin SA	protein coding gene	no	ENST00000304725.2	5.746	7.111	1.070	0.574(5502)	0.336(236)	0.208(3617)	non tumor-specific	nAS	yes
POU6F1_LS014	chr12:51199863|51204173:-	POU6F1	POU class 6 homeobox 1	protein coding gene	no	ENST00000550824.6	1.820	1.510	1.339	0.033(319)	0.071(50)	0.679(11796)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGEF40_LS010	chr14:21076456|21076536:+	ARHGEF40	Rho guanine nucleotide exchange factor 40	protein coding gene	no	ENST00000553709.5	0.578	0.804	0.754	0.106(1018)	0.13(91)	0.232(4025)	non tumor-specific	alt_3prime	yes
CCDC84_LS030	chr11:119015083|119015307:+	CCDC84	coiled-coil domain containing 84	protein coding gene	no	ENST00000334418.5;ENST00000526463.5;ENST00000527356.1;ENST00000533787.1	26.363	10.651	70.981	0.992(9501)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
GPR137C_LS002	chr14:52553591|52598272:+	GPR137C	G protein-coupled receptor 137C	protein coding gene	no	ENST00000321662.10;ENST00000542169.6	1.307	0.679	1.136	0.347(3327)	0.244(171)	0.419(7280)	non tumor-specific	exon_skip	yes
CUX1_LS015	chr7:102111774|102115207:+	CUX1	cut like homeobox 1	protein coding gene	yes	ENST00000437600.9;ENST00000645010.1;ENST00000646649.1;ENST00000292538.9;ENST00000393824.7;ENST00000622516.5;ENST00000547394.6;ENST00000360264.7;ENST00000425244.6;ENST00000292535.11;ENST00000546411.7;ENST00000549414.6;ENST00000550008.6;ENST00000556210.1;ENST00000560541.5;ENST00000558836.5;ENST00000465461.7;ENST00000485792.1	103.367	76.489	64.906	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MIR4436B1_UP_LS0012	chr2:110115854|110279695:-	MIR4436B1	microRNA 4436b-1	small non-coding RNA gene	no	.	0.445	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2H_LS011	chr7:129879642|129880895:-	UBE2H	ubiquitin conjugating enzyme E2 H	protein coding gene	no	ENST00000355621.7;ENST00000649897.1;ENST00000473814.6;ENST00000472396.5;ENST00000480245.5;ENST00000486283.1;ENST00000490974.1	82.782	49.849	48.100	0.995(9535)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LRRN2_LS0097	chr1:204633246|204636114:-	LRRN2	leucine rich repeat neuronal 2	protein coding gene	no	.	0.894	0.384	0.000	0.004(37)	0.009(6)	0(0)	non tumor-specific	nAS	no
MAPK8_LS014	chr10:48420320|48424514:+	MAPK8	mitogen-activated protein kinase 8	protein coding gene	no	ENST00000395611.7;ENST00000374179.8;ENST00000374176.8	16.425	16.841	13.587	0.962(9213)	0.989(694)	0.971(16875)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CHPF_LS0077	chr2:219539481|219539599:+	CHPF	chondroitin polymerizing factor	protein coding gene	no	.	7.782	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TLL1_UP_LS0007	chr4:165798597|165815535:+	TLL1	tolloid like 1	protein coding gene	no	.	2.082	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AGAP14P_LS004	chr10:46342940|46350518:+	AGAP14P	ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene	pseudogene	no	ENST00000624701.2	3.319	1.369	0.715	0.665(6376)	0.655(460)	0.154(2684)	non tumor-specific	nAS	yes
UN_AL138889.2_UP_LS0008	chr6:33844085|33845609:+	AL138889.2	-	pseudogene	no	.	3.456	0.156	0.000	0.02(196)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_MAPK4_LS0013	chr18:50650279|50663089:+	MAPK4	mitogen-activated protein kinase 4	protein coding gene	no	.	2.504	1.438	0.000	0.032(305)	0.282(198)	0(0)	non tumor-specific	alt_3prime	no
UN_AGAP3_LS0038	chr7:151123613|151123794:+	AGAP3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein coding gene	no	.	6.499	0.348	0.000	0.012(113)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NFKB2_LS0032	chr10:102401518|102401621:+	NFKB2	nuclear factor kappa B subunit 2	protein coding gene	yes	.	7.780	1.074	0.000	0.015(144)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
ALG1_LS021	chr16:5085664|5086501:+	ALG1	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase	protein coding gene	no	ENST00000592661.1	1.527	0.150	0.596	0.006(56)	0.006(4)	0.001(23)	non tumor-specific	nAS	yes
ANO2_LS003	chr12:5563568|5564463:-	ANO2	anoctamin 2	protein coding gene	no	ENST00000612575.1	0.108	0.084	0.690	0.033(317)	0.067(47)	0.049(857)	non tumor-specific	nAS	yes
UN_TMPRSS6_LS0020	chr22:37084469|37084727:-	TMPRSS6	transmembrane serine protease 6	protein coding gene	yes	.	4.999	1.122	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
TMEM246_LS004	chr9:101477169|101486949:-	TMEM246	post-GPI attachment to proteins GalNAc transferase 4	protein coding gene	no	ENST00000374848.7;ENST00000374848.7	7.398	7.578	8.815	0.749(7174)	0.885(621)	0.914(15885)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL671762.1_UP_LS0311	chr6:31816416|31828419:+	AL671762.1	-	lncRNA gene	no	.	108.368	6.890	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00524_LS001	chr14:101406224|101407743:-	LINC00524	long intergenic non-protein coding RNA 524	lncRNA gene	no	ENST00000556987.1	0.200	0.009	0.686	0.036(343)	0.019(13)	0.008(147)	non tumor-specific	nAS	yes
ELOF1_LS020	chr19:11555253|11555345:-	ELOF1	elongation factor 1 homolog	protein coding gene	no	ENST00000587806.5	0.126	0.085	0.708	0.185(1773)	0.117(82)	0.172(2991)	non tumor-specific	exon_skip;intron_retention	yes
SEPT9_LS021	chr17:77322948|77402059:+	SEPT9	septin 9	protein coding gene	yes	ENST00000591934.1	0.075	0.001	0.641	0.096(918)	0.041(29)	0.069(1207)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
KIAA0100_LS014	chr17:28620015|28620509:-	KIAA0100	KIAA0100	protein coding gene	no	ENST00000528896.6;ENST00000544884.5;ENST00000389003.7	156.081	97.065	79.422	0.992(9504)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
COL6A2_LS028	chr21:46122158|46122496:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	ENST00000300527.8;ENST00000310645.9;ENST00000409416.5;ENST00000397763.5;ENST00000413758.1	498.656	363.812	551.208	0.989(9476)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CLMN_LS0002	chr14:95184827|95185129:+	CLMN	calmin	protein coding gene	no	.	2.339	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AGFG1_LS0018	chr2:227524915|227528691:+	AGFG1	ArfGAP with FG repeats 1	protein coding gene	yes	.	2.800	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ABHD12_LS003	chr20:25300884|25302219:-	ABHD12	abhydrolase domain containing 12, lysophospholipase	protein coding gene	no	ENST00000339157.9	225.784	107.169	85.392	0.994(9522)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CLCN2_LS018	chr3:184354652|184354904:-	CLCN2	chloride voltage-gated channel 2	protein coding gene	no	ENST00000636419.1	2.042	0.000	0.719	0.001(8)	0(0)	0.064(1106)	non tumor-specific	alt_3prime;exon_skip	yes
FAM214A_LS015	chr15:52611777|52613673:-	FAM214A	family with sequence similarity 214 member A	protein coding gene	no	ENST00000261844.11;ENST00000534964.6;ENST00000546305.6;ENST00000619572.4;ENST00000562135.5;ENST00000566768.5;ENST00000561490.5;ENST00000561543.5;ENST00000568863.1	5.850	5.473	10.394	0.891(8537)	0.976(685)	0.964(16749)	non tumor-specific	exon_skip	yes
UN_PROX1-AS1_LS0008	chr1:213935090|213947141:+	PROX1-AS1	PROX1 antisense RNA 1	lncRNA gene	no	.	1.942	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC104257.1_UP_LS0007	chr8:131077232|131089335:+	AC104257.1	-	lncRNA gene	no	.	3.990	0.941	0.000	0.033(317)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_HDGFL3_LS0014	chr15:83123390|83124672:+	HDGFL3	HDGF like 3	protein coding gene	no	.	1.940	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_AC002070.1_LS0012	chr12:119553645|119594830:-	AC002070.1	-	lncRNA gene	no	.	3.170	0.678	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MIR148A_UP_LS0002	chr7:26019119|26019458:-	MIR148A	microRNA 148a	small non-coding RNA gene	yes	.	2.589	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NELFA_LS0016	chr4:1986183|1986280:-	NELFA	negative elongation factor complex member A	protein coding gene	no	.	7.214	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	alt_5prime	no
EPB41L3_LS059	chr18:5489194|5518525:-	EPB41L3	erythrocyte membrane protein band 4.1 like 3	protein coding gene	yes	ENST00000580179.2	0.469	0.036	0.681	0.005(45)	0.006(4)	0.006(97)	non tumor-specific	nAS	yes
UN_CMBL_UP_LS0016	chr5:10351773|10352746:-	CMBL	carboxymethylenebutenolidase homolog	protein coding gene	no	.	1.888	0.375	0.000	0.04(380)	0.034(24)	0(0)	non tumor-specific	nAS	no
UN_DIS3_LS0019	chr13:72778378|72780846:-	DIS3	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein coding gene	yes	.	2.865	0.515	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PRDX1_LS005	chr1:45515807|45518938:-	PRDX1	peroxiredoxin 1	protein coding gene	no	ENST00000262746.5;ENST00000319248.12;ENST00000447184.5;ENST00000424390.1;ENST00000483583.1	794.542	467.610	614.782	0.999(9575)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_DAG1_LS0047	chr3:49530966|49531139:-	DAG1	dystroglycan 1	protein coding gene	no	.	1.336	0.944	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
FANCC_LS029	chr9:95310355|95317526:-	FANCC	FA complementation group C	protein coding gene	no	ENST00000647778.1	0.717	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	nAS	yes
DDC_LS025	chr7:50544113|50565285:-	DDC	dopa decarboxylase	protein coding gene	no	ENST00000444124.6	17.946	32.174	3.264	0.287(2749)	0.45(316)	0.115(1998)	non tumor-specific	exon_skip	yes
UN_ZNF696_LS0017	chr8:143293681|143295379:+	ZNF696	zinc finger protein 696	protein coding gene	no	.	0.395	0.000	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HDAC7_LS047	chr12:47795767|47796215:-	HDAC7	histone deacetylase 7	protein coding gene	no	ENST00000477203.6	0.211	0.190	1.122	0.723(6926)	0.742(521)	0.57(9902)	non tumor-specific	alt_5prime;exon_skip	yes
UN_JUND_LS0073	chr19:18280599|18281056:+	JUND	JunD proto-oncogene, AP-1 transcription factor subunit	protein coding gene	yes	.	8.532	2.101	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
GALNT15_LS014	chr3:16222758|16231793:+	GALNT15	polypeptide N-acetylgalactosaminyltransferase like 5	protein coding gene	no	ENST00000437509.3	0.593	0.405	1.530	0.108(1037)	0.171(120)	0.456(7918)	non tumor-specific	nAS	yes
EGFR_LS029	chr7:55191874|55192766:+	EGFR	epidermal growth factor receptor	protein coding gene	yes	ENST00000455089.5;ENST00000454757.6;ENST00000275493.6;ENST00000638463.1	31.517	23.558	16.101	0.822(7880)	0.972(682)	0.917(15938)	non tumor-specific	nAS	yes
P2RX7_LS013	chr12:121162520|121165357:+	P2RX7	purinergic receptor P2X 7	protein coding gene	no	ENST00000537312.5;ENST00000328963.9;ENST00000539695.5;ENST00000545434.5;ENST00000535250.5;ENST00000539606.5;ENST00000541716.5;ENST00000541022.5;ENST00000541564.5;ENST00000538011.5;ENST00000535600.2	7.392	2.760	4.608	0.58(5553)	0.681(478)	0.869(15112)	non tumor-specific	exon_skip	yes
UN_C1QTNF3-AMACR_LS0010	chr5:33993375|33993948:-	C1QTNF3-AMACR	C1QTNF3-AMACR readthrough (NMD candidate)	protein coding gene	no	.	3.747	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXNRD2_LS0002	chr22:19875796|19877040:-	TXNRD2	thioredoxin reductase 2	protein coding gene	no	.	17.208	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CXorf51A_LS001	chrX:146814401|146814592:-	CXorf51A	chromosome X open reading frame 51A	protein coding gene	no	ENST00000458472.1	0.722	0.000	0.700	0.028(266)	0(0)	0.001(15)	non tumor-specific	nAS	yes
UN_AL356289.3_UP_LS0002	chr1:48093239|48094044:+	AL356289.3	-	lncRNA gene	no	.	3.682	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
AC245595.2_LS004	chr1:144289025|144290007:-	AC245595.2	-	pseudogene	no	ENST00000620141.4	7.796	1.742	0.784	0.002(22)	0.006(4)	0.007(128)	non tumor-specific	nAS	yes
UN_TMX3_LS0017	chr18:68689054|68689948:-	TMX3	thioredoxin related transmembrane protein 3	protein coding gene	no	.	1.532	0.260	0.000	0.021(203)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_RNU1-75P_UP_LS0004	chr1:119356553|119356690:-	RNU1-75P	RNA, U1 small nuclear 75, pseudogene	small non-coding RNA gene	no	.	2.142	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AL161937.1_LS001	chr20:50166636|50169346:+	AL161937.1	-	lncRNA gene	no	ENST00000444478.1	0.099	0.052	0.609	0.025(242)	0.024(17)	0.017(288)	non tumor-specific	nAS	yes
NIPA1_LS002	chr15:22786248|22810749:+	NIPA1	NIPA magnesium transporter 1	protein coding gene	no	ENST00000561183.5;ENST00000560069.5	0.244	0.139	0.641	0.242(2319)	0.272(191)	0.077(1334)	non tumor-specific	nAS	yes
UN_IGLC7_UP_LS0004	chr22:22899655|22922594:+	IGLC7	immunoglobulin lambda constant 7	no	no	.	505.768	0.293	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF295-AS1_LS0001	chr21:42009584|42011221:+	ZNF295-AS1	ZNF295 antisense RNA 1	lncRNA gene	no	.	2.592	0.889	0.000	0.012(117)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC20_LS0006	chr13:21374354|21375032:+	ZDHHC20	zinc finger DHHC-type palmitoyltransferase 20	protein coding gene	no	.	0.923	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRG-AS1_LS0021	chr7:38346127|38359452:+	TRG-AS1	T cell receptor gamma locus antisense RNA 1	lncRNA gene	no	.	2.169	0.173	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC092944.1_UP_LS0004	chr3:157159847|157169017:+	AC092944.1	-	lncRNA gene	no	.	1.106	0.015	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FBXL18_LS0059	chr7:5490461|5491231:-	FBXL18	F-box and leucine rich repeat protein 18	protein coding gene	no	.	2.419	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
ALDH1A1_LS002	chr9:72906032|72909602:-	ALDH1A1	aldehyde dehydrogenase 1 family member A1	protein coding gene	yes	ENST00000297785.7	346.173	533.318	174.880	0.98(9386)	0.997(700)	0.976(16972)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NDUFA3_LS0010	chr19:54103192|54105934:+	NDUFA3	NADH:ubiquinone oxidoreductase subunit A3	protein coding gene	no	.	40.777	7.990	0.000	0.034(324)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NOXA1_LS0028	chr9:137430980|137431075:+	NOXA1	NADPH oxidase activator 1	protein coding gene	no	.	5.245	0.063	0.000	0.039(376)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
PTPRH_LS026	chr19:55206955|55207126:-	PTPRH	protein tyrosine phosphatase receptor type H	protein coding gene	no	ENST00000586310.1;ENST00000586310.1	0.067	0.089	0.949	0.168(1609)	0.12(84)	0.054(943)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_ABCD3_LS0009	chr1:94419323|94458607:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	.	0.859	0.250	0.000	0.008(77)	0.017(12)	0(0)	non tumor-specific	alt_5prime	no
UN_ZNF629_LS0029	chr16:30783499|30783584:+	ZNF629	zinc finger protein 629	protein coding gene	no	.	1.100	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CASP10_LS004	chr2:201187799|201192984:+	CASP10	caspase 10	protein coding gene	no	ENST00000286186.10;ENST00000360132.7;ENST00000460140.5;ENST00000272879.9;ENST00000374650.7;ENST00000346817.9;ENST00000313728.11;ENST00000448480.1;ENST00000492363.5;ENST00000471191.1;ENST00000485408.1	6.861	6.813	4.833	0.936(8967)	0.983(690)	0.92(15988)	non tumor-specific	exon_skip	yes
TPST1_LS002	chr7:66205522|66209853:+	TPST1	tyrosylprotein sulfotransferase 1	protein coding gene	no	ENST00000649664.1	0.837	0.150	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	exon_skip	yes
UN_RAD52_LS0028	chr12:983807|989809:-	RAD52	RAD52 homolog, DNA repair protein	protein coding gene	no	.	2.125	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
IPO5P1_LS004	chr19:23261744|23272619:-	IPO5P1	importin 5 pseudogene 1	lncRNA gene	no	ENST00000639327.1	0.137	0.073	0.688	0.074(706)	0.111(78)	0.113(1972)	non tumor-specific	nAS	yes
LINC01798_LS012	chr2:66713541|66729939:+	LINC01798	long intergenic non-protein coding RNA 1798	lncRNA gene	no	ENST00000412944.1	5.079	0.107	0.695	0.002(17)	0.001(1)	0.017(290)	non tumor-specific	nAS	yes
UN_LINC01278_LS0001	chrX:63351637|63352426:-	LINC01278	long intergenic non-protein coding RNA 1278	lncRNA gene	no	.	2.008	0.367	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC00506_LS0007	chr3:87152359|87155007:-	LINC00506	long intergenic non-protein coding RNA 506	lncRNA gene	no	.	4.699	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ABCC8_LS016	chr11:17397313|17398339:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000647086.1;ENST00000647086.1	2.069	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COL1A1_LS0792	chr17:50195093|50195605:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	15.931	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNDP2_LS0064	chr18:74520259|74520281:-	CNDP2	carnosine dipeptidase 2	protein coding gene	yes	.	4.769	0.355	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0004	chr1:587055|631107:-	AL669831.3	-	pseudogene	no	.	8.933	0.972	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FBLN7_LS0036	chr2:112185339|112186989:+	FBLN7	fibulin 7	protein coding gene	no	.	4.348	0.464	0.000	0.03(283)	0.024(17)	0(0)	non tumor-specific	alt_3prime	no
UN_AC011298.1_LS0006	chr2:240687586|240688416:+	AC011298.1	-	lncRNA gene	no	.	5.232	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PLEKHM2_LS006	chr1:15718625|15719734:+	PLEKHM2	pleckstrin homology and RUN domain containing M2	protein coding gene	no	ENST00000375799.7;ENST00000375793.2;ENST00000462455.1;ENST00000642363.1	71.715	48.958	67.938	0.99(9482)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LINC00571_LS001	chr13:38050881|38061396:-	LINC00571	long intergenic non-protein coding RNA 571	lncRNA gene	no	ENST00000434565.5	0.659	0.024	0.761	0.03(284)	0.074(52)	0.187(3258)	non tumor-specific	nAS	yes
UN_RPL30_LS0015	chr8:98032317|98033024:+	RPL30	ribosomal protein L30	protein coding gene	no	.	20.823	21.771	0.000	0.011(110)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AP2B1_LS019	chr17:35605840|35608142:+	AP2B1	adaptor related protein complex 2 subunit beta 1	protein coding gene	no	ENST00000589774.5;ENST00000616784.4;ENST00000621914.4;ENST00000620039.4;ENST00000590538.5;ENST00000612035.4;ENST00000610402.4;ENST00000614600.4;ENST00000612116.5;ENST00000618940.4;ENST00000593014.3	58.110	44.437	46.453	0.968(9279)	0.986(692)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
LTBP2_LS039	chr14:74551350|74612046:-	LTBP2	latent transforming growth factor beta binding protein 3	protein coding gene	no	ENST00000557425.1	0.274	0.086	0.586	0.121(1163)	0.202(142)	0.004(71)	non tumor-specific	nAS	yes
OTOGL_LS029	chr12:80279166|80302634:+	OTOGL	otogelin like	protein coding gene	no	ENST00000646859.1	0.583	0.084	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	exon_skip	yes
UN_MMGT1_LS0012	chrX:135967493|135973597:-	MMGT1	membrane magnesium transporter 1	protein coding gene	no	.	5.138	0.297	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC009779.5_UP_LS0004	chr12:55679645|55681869:-	AC009779.5	-	pseudogene	no	.	1.090	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACTG1_LS0100	chr17:81510295|81510754:+	ACTG1	actin gamma 1	protein coding gene	no	.	59.589	4.513	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
STPG4_LS005	chr2:47087130|47090270:-	STPG4	sperm-tail PG-rich repeat containing 4	protein coding gene	no	ENST00000449846.5;ENST00000445927.6	2.819	0.000	0.697	0.018(169)	0(0)	0.032(560)	non tumor-specific	nAS	yes
AGTR1_LS008	chr3:148730237|148730338:+	AGTR1	angiotensin II receptor type 1	protein coding gene	yes	ENST00000475166.5;ENST00000461609.1	1.595	0.196	0.735	0.021(202)	0.038(27)	0.157(2735)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_AC062004.1_UP_LS0002	chr8:77000333|77006808:+	AC062004.1	-	lncRNA gene	no	.	1.181	0.047	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SIM2_UP_LS0002	chr21:36446007|36626995:+	SIM2	SIM bHLH transcription factor 2	protein coding gene	no	.	2.226	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NSL1_LS0005	chr1:212730709|212739534:-	NSL1	NSL1 component of MIS12 kinetochore complex	protein coding gene	no	.	0.903	0.260	0.000	0.009(88)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_SEPT2_LS0003	chr2:241326113|241329611:+	SEPT2	septin 6	protein coding gene	no	.	1.317	0.084	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PPM1H_LS004	chr12:62693999|62720171:-	PPM1H	protein phosphatase, Mg2+/Mn2+ dependent 1H	protein coding gene	no	ENST00000228705.6;ENST00000551214.5;ENST00000551519.1	11.697	8.771	1.873	0.811(7768)	0.859(603)	0.679(11801)	non tumor-specific	exon_skip	yes
SUPT6H_LS043	chr17:28700250|28700346:+	SUPT6H	SPT6 homolog, histone chaperone and transcription elongation factor	protein coding gene	no	ENST00000314616.10;ENST00000347486.8;ENST00000581510.1;ENST00000583340.1	122.720	67.880	144.368	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_UBAP2_LS0021	chr9:33933628|33934963:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	.	2.050	0.116	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_S100A2_UP_LS0002	chr1:153575660|153583589:-	S100A2	S100 calcium binding protein A2	protein coding gene	yes	.	5.706	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCNX2_LS0084	chr1:233200624|233206315:+	PCNX2	pecanex 2	protein coding gene	no	.	4.494	0.530	0.000	0.015(140)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL583836.1_LS006	chr10:94733438|94775058:+	AL583836.1	-	protein coding gene	no	ENST00000464755.1	2.290	0.977	2.053	0.072(688)	0.095(67)	0.16(2785)	non tumor-specific	nAS	yes
DMD_LS086	chrX:32645152|32697870:-	DMD	dystrophin	protein coding gene	yes	ENST00000619831.4;ENST00000378677.6;ENST00000620040.4;ENST00000357033.8;ENST00000288447.8	3.611	3.031	3.024	0.116(1108)	0.333(234)	0.669(11625)	non tumor-specific	exon_skip	yes
PRKDC_LS082	chr8:47944029|47953620:-	PRKDC	protein kinase, DNA-activated, catalytic subunit	protein coding gene	no	ENST00000314191.6;ENST00000338368.7	12.617	5.380	3.062	0.695(6661)	0.816(573)	0.835(14522)	non tumor-specific	nAS	yes
USP3_LS016	chr15:63542192|63553715:+	USP3	ubiquitin specific peptidase 3	protein coding gene	no	ENST00000538686.6	0.154	0.065	1.000	0.05(479)	0.048(34)	0.528(9183)	non tumor-specific	exon_skip	yes
UN_SCMH1_LS0025	chr1:41034102|41037362:-	SCMH1	Scm polycomb group protein homolog 1	protein coding gene	no	.	2.874	1.463	0.000	0.016(155)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC01673_UP_LS0005	chr21:27534643|27546517:+	LINC01673	long intergenic non-protein coding RNA 1673	lncRNA gene	no	.	3.573	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00853_LS0014	chr1:47179664|47179868:+	LINC00853	long intergenic non-protein coding RNA 853	lncRNA gene	no	.	2.884	0.834	0.000	0.142(1359)	0.095(67)	0(0)	non tumor-specific	nAS	no
UN_VARS_LS0047	chr6:31784714|31785213:-	VARS	valyl-tRNA synthetase 1	protein coding gene	no	.	9.220	0.062	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
SPTAN1_LS008	chr9:128553311|128566738:+	SPTAN1	spectrin alpha, non-erythrocytic 1	protein coding gene	no	ENST00000635853.1	0.463	2.510	0.843	0.001(10)	0.001(1)	0.098(1708)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC034223.1_LS001	chr5:33009266|33025399:+	AC034223.1	-	lncRNA gene	no	ENST00000511054.1	0.043	0.012	0.659	0.008(72)	0.003(2)	0.001(16)	non tumor-specific	nAS	yes
TMEM54_LS001	chr1:32894879|32895305:-	TMEM54	transmembrane protein 54	protein coding gene	no	ENST00000482771.1;ENST00000373463.7;ENST00000329151.5;ENST00000474144.5;ENST00000475208.5	226.245	167.632	69.812	0.913(8745)	0.953(669)	0.963(16738)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ANKRD30B_LS013	chr18:14782614|14784336:+	ANKRD30B	ankyrin repeat domain 30B	protein coding gene	no	ENST00000358984.8;ENST00000580206.1	2.690	0.111	1.552	0.025(243)	0.027(19)	0.151(2620)	non tumor-specific	nAS	yes
UN_TGOLN2_LS0128	chr2:85327470|85327513:-	TGOLN2	trans-golgi network protein 2	protein coding gene	no	.	18.084	6.810	0.000	0.007(71)	0.016(11)	0(0)	non tumor-specific	intron_retention	no
KBTBD11-OT1_LS029	chr8:1905716|1909295:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000635773.1	9.557	7.648	25.102	0.853(8177)	0.902(633)	0.947(16464)	non tumor-specific	exon_skip	yes
LINC01588_LS009	chr14:49992007|49992256:-	LINC01588	long intergenic non-protein coding RNA 1588	lncRNA gene	no	ENST00000533506.5	1.207	1.179	0.992	0.236(2263)	0.144(101)	0.402(6989)	non tumor-specific	alt_3prime;intron_retention	yes
UN_PTCSC2_UP_LS0009	chr9:97892121|97892806:-	PTCSC2	papillary thyroid carcinoma susceptibility candidate 2	lncRNA gene	no	.	2.223	0.475	0.000	0.005(49)	0.013(9)	0(0)	non tumor-specific	nAS	no
KMT2A_LS014	chr11:118478201|118480174:+	KMT2A	lysine methyltransferase 2A	protein coding gene	yes	ENST00000534358.6;ENST00000389506.10;ENST00000531904.6;ENST00000649699.1;ENST00000533790.2	9.148	4.933	7.759	0.663(6352)	0.811(569)	0.952(16547)	non tumor-specific	nAS	yes
UN_FP671120.2_UP_LS0128	chr21:8210820|8255030:-	FP671120.2	-	lncRNA gene	no	.	50.999	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CERS4_LS053	chr19:8261844|8261930:+	CERS4	ceramide synthase 4	protein coding gene	no	ENST00000558331.5;ENST00000251363.9;ENST00000559450.5;ENST00000595722.5;ENST00000557925.1;ENST00000599275.1	100.454	54.402	77.568	0.943(9036)	0.952(668)	0.977(16989)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
VWA7_LS020	chr6:31774626|31775333:-	VWA7	von Willebrand factor A domain containing 7	protein coding gene	no	ENST00000375688.4;ENST00000467576.1	5.993	6.701	2.509	0.514(4923)	0.756(531)	0.72(12513)	non tumor-specific	nAS	yes
UN_KIN_LS0001	chr10:7753599|7753952:-	KIN	Kin17 DNA and RNA binding protein	protein coding gene	no	.	0.921	0.456	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RUVBL2_LS0008	chr19:49007147|49009776:+	RUVBL2	RuvB like AAA ATPase 2	protein coding gene	no	.	9.615	1.826	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC092747.1_LS0013	chr12:27148604|27156096:+	AC092747.1	-	lncRNA gene	no	.	1.314	0.151	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SP1_LS0042	chr12:53383622|53400619:+	SP1	Sp1 transcription factor	protein coding gene	no	.	1.505	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CAND1_LS006	chr12:67295156|67297407:+	CAND1	cullin associated and neddylation dissociated 1	protein coding gene	no	ENST00000545606.5;ENST00000535146.1;ENST00000540319.5	36.736	23.816	22.719	0.961(9206)	0.986(692)	0.974(16930)	non tumor-specific	alt_3prime;exon_skip	yes
RAB11FIP5_LS006	chr2:73081345|73088050:-	RAB11FIP5	RAB11 family interacting protein 5	protein coding gene	no	.;.	8.857	8.499	0.000	0.682(6538)	0.805(565)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TSPO_LS0013	chr22:43159336|43161052:+	TSPO	translocator protein	protein coding gene	no	.	15.415	1.270	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_C6_LS0028	chr5:41195933|41203088:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	.	2.222	0.104	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_EIF5A_LS0009	chr17:7307238|7307648:+	EIF5A	eukaryotic translation initiation factor 5A	protein coding gene	no	.	2.901	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PPL_LS025	chr16:4904040|4936984:-	PPL	periplakin	protein coding gene	no	.;.	3.679	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MAPKAP1_LS016	chr9:125506417|125543059:-	MAPKAP1	MAPK associated protein 1	protein coding gene	no	ENST00000373511.6;ENST00000373498.5;ENST00000373503.7;ENST00000265960.7;ENST00000394063.5;ENST00000473837.5	89.024	61.997	51.996	0.995(9531)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AL451069.3_LS001	chr10:132434691|132441431:-	AL451069.3	-	lncRNA gene	no	ENST00000450206.1	0.635	0.023	0.624	0.063(607)	0.026(18)	0.014(236)	non tumor-specific	nAS	yes
ADAMTS7_LS009	chr15:78768259|78771162:-	ADAMTS7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein coding gene	no	ENST00000388820.4	7.692	2.019	5.771	0.689(6599)	0.481(338)	0.866(15048)	non tumor-specific	nAS	yes
UN_FP236383.1_UP_LS0109	chr21:8214325|8258439:+	FP236383.1	-	lncRNA gene	no	.	121.395	23.259	0.000	0.014(137)	0.016(11)	0(0)	non tumor-specific	nAS	no
OGDH_LS026	chr7:44694576|44696025:+	OGDH	oxoglutarate dehydrogenase	protein coding gene	no	ENST00000439616.6;ENST00000447398.5;ENST00000449767.5;ENST00000444676.5;ENST00000631326.2;ENST00000222673.5	128.691	114.013	66.156	0.99(9482)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC006296.1_UP_LS0005	chr4:14251397|14252952:+	AC006296.1	-	lncRNA gene	no	.	4.262	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C12orf60_LS0008	chr12:14806696|14840445:-	C12orf60	chromosome 12 open reading frame 60	protein coding gene	no	.	2.890	1.149	0.000	0.006(60)	0.043(30)	0(0)	non tumor-specific	nAS	no
RASA3_LS011	chr13:114011248|114013142:-	RASA3	RAS p21 protein activator 3	protein coding gene	no	ENST00000334062.7	30.121	17.472	35.280	0.921(8821)	0.98(688)	0.978(17008)	non tumor-specific	mutex_exons	yes
UN_AL450345.1_UP_LS0044	chr6:164496418|164507700:+	AL450345.1	-	lncRNA gene	no	.	3.520	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PRSS54_LS008	chr16:58294209|58294887:-	PRSS54	serine protease 54	protein coding gene	no	ENST00000567164.5;ENST00000569079.1	2.961	0.000	0.860	0.007(66)	0(0)	0.015(268)	non tumor-specific	alt_3prime	yes
PHKA1_LS019	chrX:72619305|72623109:-	PHKA1	phosphorylase kinase regulatory subunit alpha 1	protein coding gene	no	ENST00000373545.7;ENST00000541944.5	0.692	0.514	1.881	0.326(3122)	0.528(371)	0.597(10385)	non tumor-specific	exon_skip	yes
UN_OBSL1_LS0075	chr2:219565514|219567273:-	OBSL1	obscurin like cytoskeletal adaptor 1	protein coding gene	no	.	4.837	0.067	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_HNRNPUL2_LS0096	chr11:62727004|62727100:+	HNRNPUL2	heterogeneous nuclear ribonucleoprotein U like 2	protein coding gene	no	.	2.084	0.396	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SNPH_LS0010	chr20:1295917|1296325:+	SNPH	syntaphilin	protein coding gene	no	.	0.623	0.438	0.000	0.004(37)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_CARTPT_LS0001	chr5:71719699|71719880:+	CARTPT	CART prepropeptide	protein coding gene	no	.	15.727	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_UACA_LS0003	chr15:70664814|70669450:-	UACA	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein coding gene	no	.	1.261	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime	no
HORMAD1_LS030	chr1:150719538|150720804:-	HORMAD1	HORMA domain containing 1	protein coding gene	no	ENST00000368995.8;ENST00000322343.11;ENST00000361824.6;ENST00000368987.5;ENST00000442853.5;ENST00000476530.1	1.328	0.017	0.657	0.02(187)	0.004(3)	0.013(222)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AC044784.2_UP_LS0004	chr10:8862416|8868253:+	AC044784.2	-	lncRNA gene	no	.	1.877	0.522	0.000	0.011(104)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PHF6_LS0002	chrX:134373678|134377572:+	PHF6	PHD finger protein 6	protein coding gene	yes	.	1.079	0.269	0.000	0.059(566)	0.07(49)	0(0)	non tumor-specific	nAS	no
CAPG_LS014	chr2:85401683|85401785:-	CAPG	capping actin protein, gelsolin like	protein coding gene	yes	ENST00000263867.8;ENST00000409921.5;ENST00000409670.5;ENST00000409724.5;ENST00000439385.5;ENST00000449030.5;ENST00000447219.6;ENST00000459793.2;ENST00000409275.1;ENST00000415012.1	226.891	153.186	77.766	0.998(9559)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
OBSCN_LS025	chr1:228272221|228273272:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000570156.6;ENST00000366707.9	2.661	0.942	1.623	0.042(398)	0.063(44)	0.627(10903)	non tumor-specific	exon_skip;intron_retention	yes
CPA1_LS008	chr7:130382209|130383391:+	CPA1	carboxypeptidase A1	protein coding gene	no	ENST00000481342.5;ENST00000011292.7;ENST00000491460.5;ENST00000476062.5;ENST00000484324.1	26.968	41.168	6.255	0.062(591)	0.205(144)	0.71(12346)	non tumor-specific	exon_skip	yes
KCTD15_LS007	chr19:33796987|33798671:+	KCTD15	potassium channel tetramerization domain containing 15	protein coding gene	no	ENST00000589786.5;ENST00000589786.5	1.576	0.647	4.940	0.785(7523)	0.852(598)	0.905(15726)	non tumor-specific	alt_3prime;exon_skip	yes
UN_G0S2_LS0003	chr1:209675549|209675627:+	G0S2	G0/G1 switch 2	protein coding gene	yes	.	19.917	17.309	0.000	0.022(208)	0.067(47)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PSPC1_LS0039	chr13:19772543|19782077:-	PSPC1	paraspeckle component 1	protein coding gene	no	.	4.517	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UHRF1BP1_LS0001	chr6:34792168|34821653:+	UHRF1BP1	UHRF1 binding protein 1	protein coding gene	no	.	0.608	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
RNF146_LS026	chr6:127286177|127286616:+	RNF146	ring finger protein 146	protein coding gene	no	ENST00000476956.5;ENST00000309649.7;ENST00000356799.6;ENST00000477776.5;ENST00000610162.5;ENST00000608991.5;ENST00000480444.1	13.447	11.543	32.196	0.95(9103)	0.962(675)	0.978(17001)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
PLK4_LS001	chr4:127881164|127881831:+	PLK4	polo like kinase 4	protein coding gene	no	ENST00000270861.9;ENST00000511942.5;ENST00000503914.1;ENST00000515069.5;ENST00000513090.5;ENST00000507249.5	2.439	0.668	1.281	0.794(7611)	0.67(470)	0.55(9559)	non tumor-specific	nAS	yes
AZU1_LS001	chr19:825197|828230:+	AZU1	azurocidin 1	protein coding gene	no	ENST00000592205.5	0.378	0.093	0.772	0.053(504)	0.084(59)	0.082(1426)	non tumor-specific	nAS	yes
UN_RPS20P25_UP_LS0035	chr9:80921663|80928790:+	RPS20P25	ribosomal protein S20 pseudogene 25	pseudogene	no	.	3.108	0.139	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NBPF14_LS0077	chr1:148640089|148642319:-	NBPF14	NBPF member 14	protein coding gene	no	.	2.246	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BEST1_LS0014	chr11:61957232|61958224:-	BEST1	bestrophin 1	protein coding gene	no	.	2.616	0.158	0.000	0.009(90)	0.007(5)	0(0)	non tumor-specific	nAS	no
TRMT9B_LS009	chr8:12991031|13006202:+	TRMT9B	tRNA methyltransferase 9B (putative)	protein coding gene	no	ENST00000447063.6;ENST00000524591.6;ENST00000528335.5;ENST00000528753.2	0.548	0.780	1.601	0.3(2875)	0.611(429)	0.613(10653)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATP2C2_LS0045	chr16:84460801|84461382:+	ATP2C2	ATPase secretory pathway Ca2+ transporting 2	protein coding gene	no	.	2.766	0.763	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TMEM44_LS009	chr3:194588639|194604314:-	TMEM44	transmembrane protein 44	protein coding gene	no	ENST00000429560.1	0.941	0.245	0.666	0.595(5701)	0.514(361)	0.007(120)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TRPC3_LS0008	chr4:121901602|121902852:-	TRPC3	transient receptor potential cation channel subfamily C member 3	protein coding gene	no	.	3.098	0.161	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
WDR4_LS002	chr21:42848378|42848480:-	WDR4	WD repeat domain 4	protein coding gene	no	.;.	3.739	0.576	0.000	0.013(120)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention;mutex_exons	yes
UN_KANK3_LS0009	chr19:8325096|8326827:-	KANK3	KN motif and ankyrin repeat domains 3	protein coding gene	no	.	1.494	0.800	0.000	0.012(111)	0.047(33)	0(0)	non tumor-specific	exon_skip	no
AMY1A_LS013	chr1:103663605|103664357:+	AMY1A	amylase alpha 1A	protein coding gene	no	ENST00000494409.1	1.277	0.001	0.614	0.006(57)	0.007(5)	0.009(148)	non tumor-specific	nAS	yes
KCNT1_LS005	chr9:135714720|135742772:+	KCNT1	potassium sodium-activated channel subfamily T member 1	protein coding gene	no	ENST00000486577.6	0.000	0.000	0.822	0.001(10)	0.001(1)	0.001(13)	non tumor-specific	exon_skip	yes
UN_PRAG1_LS0009	chr8:8320926|8321819:+	PRAG1	PEAK1 related, kinase-activating pseudokinase 1	protein coding gene	no	.	3.462	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
DAAM1_LS028	chr14:59360862|59363651:+	DAAM1	dishevelled associated activator of morphogenesis 1	protein coding gene	no	ENST00000360909.7;ENST00000395125.1;ENST00000553307.5;ENST00000557029.5;ENST00000557628.5;ENST00000553472.1	11.689	14.365	17.994	0.978(9368)	0.994(698)	0.966(16788)	non tumor-specific	exon_skip	yes
UN_OBSCN_LS0142	chr1:228360312|228360890:-	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	1.797	0.077	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NEAT1_LS0151	chr11:65424864|65425041:+	NEAT1	nuclear paraspeckle assembly transcript 1	lncRNA gene	yes	.	295.755	41.452	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
GOLGA8B_LS024	chr15:34551276|34552895:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	ENST00000569100.5;ENST00000484716.5;ENST00000566091.5	9.363	4.543	4.258	0.886(8491)	0.873(613)	0.853(14833)	non tumor-specific	exon_skip	yes
AL355306.2_LS004	chr1:105956847|106038350:+	AL355306.2	-	lncRNA gene	no	ENST00000634380.1;ENST00000635233.1	3.899	0.000	1.128	0.008(73)	0(0)	0.018(316)	non tumor-specific	nAS	yes
UN_ITM2C_LS0068	chr2:230878249|230878389:-	ITM2C	integral membrane protein 2C	protein coding gene	no	.	4.755	0.254	0.000	0.008(76)	0.006(4)	0(0)	non tumor-specific	nAS	no
HERC1_LS038	chr15:63656358|63658544:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6	10.524	10.275	13.165	0.846(8105)	0.942(661)	0.971(16874)	non tumor-specific	alt_3prime	yes
UN_TBC1D2B_LS0052	chr15:78034739|78044900:-	TBC1D2B	TBC1 domain family member 2B	protein coding gene	no	.	1.793	0.729	0.000	0.052(501)	0.064(45)	0(0)	non tumor-specific	exon_skip	no
UN_AL671883.2_UP_LS0030	chr6:31269125|31354248:+	AL671883.2	-	pseudogene	no	.	22.158	14.230	0.000	0.095(913)	0.103(72)	0(0)	non tumor-specific	nAS	no
AC002368.1_LS001	chrX:148498422|148500538:-	AC002368.1	-	lncRNA gene	no	ENST00000456981.1	0.249	0.050	0.699	0.02(195)	0.021(15)	0.017(302)	non tumor-specific	nAS	yes
MYT1_LS025	chr20:64227477|64227888:+	MYT1	protein kinase, membrane associated tyrosine/threonine 1	protein coding gene	no	ENST00000360149.8;ENST00000622439.4;ENST00000536311.5;ENST00000328439.5	6.825	0.664	3.850	0.165(1577)	0.067(47)	0.352(6110)	non tumor-specific	nAS	yes
KPNA4_LS008	chr3:160514181|160515452:-	KPNA4	karyopherin subunit alpha 4	protein coding gene	no	ENST00000334256.8;ENST00000483437.1	91.669	55.982	40.926	0.992(9503)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
NEIL2_LS011	chr8:11771585|11779598:+	NEIL2	nei like DNA glycosylase 2	protein coding gene	no	ENST00000436750.7;ENST00000455213.6;ENST00000284503.6	15.662	10.506	9.146	0.969(9285)	0.987(693)	0.968(16829)	non tumor-specific	alt_5prime;exon_skip	yes
LRRC23_LS018	chr12:6910026|6912730:+	LRRC23	leucine rich repeat containing 23	protein coding gene	no	ENST00000007969.12;ENST00000451681.5;ENST00000431207.5;ENST00000443597.6	14.451	8.384	8.486	0.968(9279)	0.987(693)	0.969(16836)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_BIVM-ERCC5_LS0014	chr13:102799521|102807146:+	BIVM-ERCC5	BIVM-ERCC5 readthrough	protein coding gene	no	.	2.237	0.832	0.000	0.048(458)	0.034(24)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
LSS_LS029	chr21:46227690|46228434:-	LSS	lanosterol synthase	protein coding gene	no	ENST00000356396.8;ENST00000397728.7;ENST00000457828.6;ENST00000522411.5;ENST00000464357.1;ENST00000450351.1;ENST00000472272.1	12.699	13.248	24.507	0.956(9156)	0.987(693)	0.975(16950)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HSD17B12_LS0005	chr11:43703387|43828336:+	HSD17B12	hydroxysteroid 17-beta dehydrogenase 12	protein coding gene	no	.	5.291	1.749	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
ABLIM2_LS028	chr4:8061054|8071769:-	ABLIM2	actin binding LIM protein family member 2	protein coding gene	no	ENST00000514025.5;ENST00000510277.1	0.419	1.230	6.544	0.061(584)	0.037(26)	0.138(2393)	non tumor-specific	nAS	yes
NLRP8_LS006	chr19:55970696|55973652:+	NLRP8	NLR family pyrin domain containing 8	protein coding gene	no	ENST00000291971.7	7.005	0.810	0.835	0.016(154)	0.006(4)	0.011(183)	non tumor-specific	alt_3prime	yes
UN_OR5G3_UP_LS0004	chr11:56823781|56885131:-	OR5G3	olfactory receptor family 5 subfamily G member 3 (gene/pseudogene)	pseudogene	no	.	6.211	0.449	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ANAPC11_LS0012	chr17:81893614|81899920:+	ANAPC11	anaphase promoting complex subunit 11	protein coding gene	no	.	4.181	6.731	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
NEB_LS096	chr2:151554025|151554931:-	NEB	nebulin	protein coding gene	no	ENST00000409198.5;ENST00000427231.6;ENST00000618972.4;ENST00000397345.7;ENST00000172853.14;ENST00000413693.5;ENST00000604864.5;ENST00000603639.5	5.265	51.896	1.504	0.122(1170)	0.147(103)	0.622(10806)	non tumor-specific	nAS	yes
UN_LINC01287_LS0016	chr7:153411724|153412091:-	LINC01287	long intergenic non-protein coding RNA 1287	lncRNA gene	no	.	7.935	0.000	0.000	0.01(94)	0(0)	0(0)	non tumor-specific	nAS	no
EEA1_LS029	chr12:92864987|92879247:-	EEA1	early endosome antigen 1	protein coding gene	no	ENST00000553019.1	0.243	0.041	0.572	0.035(332)	0.06(42)	0.021(369)	non tumor-specific	exon_skip;mutex_exons	yes
HRASLS5_LS002	chr11:63463595|63466160:-	HRASLS5	phospholipase A and acyltransferase 5	protein coding gene	no	ENST00000539221.5	0.014	0.059	0.725	0.037(358)	0.127(89)	0.093(1619)	non tumor-specific	alt_5prime	yes
KRTAP5-AS1_LS002	chr11:1573068|1597248:+	KRTAP5-AS1	KRTAP5-1/KRTAP5-2 antisense RNA 1	lncRNA gene	no	ENST00000424148.1	1.065	0.602	1.175	0.324(3100)	0.352(247)	0.328(5704)	non tumor-specific	nAS	yes
UN_SATB1-AS1_LS0007	chr3:18693953|18697900:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	.	0.680	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C16orf45_LS0032	chr16:15587322|15587514:-	C16orf45	bMERB domain containing 1	protein coding gene	no	.	2.850	0.106	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABR_LS0128	chr17:1100735|1107900:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	2.715	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NDST1_UP_LS0031	chr5:150407323|150481865:+	NDST1	N-deacetylase and N-sulfotransferase 1	protein coding gene	no	.	0.683	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RARA_LS0104	chr17:40356587|40357281:-	RARA	retinoic acid receptor alpha	protein coding gene	yes	.	1.071	0.095	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
WWP1_LS002	chr8:86369031|86374030:+	WWP1	WW domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000517970.5;ENST00000523863.5	5.154	5.965	14.944	0.922(8830)	0.981(689)	0.972(16894)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CD53_LS0005	chr1:110875914|110891392:+	CD53	CD53 molecule	protein coding gene	no	.	1.576	0.404	0.000	0.039(372)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_CBFA2T2_LS0105	chr20:33631490|33636640:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	.	2.606	0.073	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CBX3_LS0004	chr7:26201826|26202541:+	CBX3	chromobox 3	protein coding gene	no	.	10.064	0.168	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_SPEG_LS0018	chr2:219461529|219461882:+	SPEG	striated muscle enriched protein kinase	protein coding gene	no	.	2.562	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_ADCY6_LS0026	chr12:48772419|48772508:-	ADCY6	adenylate cyclase 6	protein coding gene	no	.	1.591	0.623	0.000	0.019(183)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC016723.1_LS0008	chr2:167815231|167844526:-	AC016723.1	-	lncRNA gene	no	.	3.440	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
DNAH1_LS020	chr3:52352707|52353103:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	ENST00000486752.5;ENST00000420323.6;ENST00000497875.1	1.979	1.233	2.212	0.126(1208)	0.158(111)	0.844(14675)	non tumor-specific	nAS	yes
UN_IGHV2-26_UP_LS0003	chr14:106309426|106349306:-	IGHV2-26	immunoglobulin heavy variable 2-26	no	no	.	84.719	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PARP10_LS0084	chr8:143983674|143983702:-	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	20.655	0.182	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UNK_LS014	chr17:75812288|75812455:+	UNK	unk zinc finger	protein coding gene	no	ENST00000589666.5	6.896	4.022	13.533	0.963(9224)	0.98(688)	0.976(16960)	non tumor-specific	alt_5prime;intron_retention	yes
CCDC90B_LS003	chr11:83261966|83265865:-	CCDC90B	coiled-coil domain containing 90B	protein coding gene	no	ENST00000529689.5;ENST00000455220.6;ENST00000525504.5;ENST00000525503.5;ENST00000260054.8;ENST00000529611.5;ENST00000529745.5;ENST00000533761.5;ENST00000529856.5;ENST00000529312.5;ENST00000529073.5;ENST00000529689.5;ENST00000455220.6;ENST00000525504.5;ENST00000525503.5;ENST00000260054.8;ENST00000529611.5;ENST00000529745.5;ENST00000533761.5;ENST00000529856.5;ENST00000529312.5;ENST00000529073.5	45.822	26.978	64.358	0.932(8927)	0.936(657)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NFKBIZ_LS003	chr3:101829688|101848892:+	NFKBIZ	NFKB inhibitor zeta	protein coding gene	no	ENST00000461724.5	0.030	0.000	0.651	0.017(163)	0.036(25)	0.003(54)	non tumor-specific	exon_skip	yes
UN_KIAA0586_LS0011	chr14:58441579|58442706:+	KIAA0586	KIAA0586	protein coding gene	no	.	0.570	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC35D2_LS0030	chr9:96357175|96360154:-	SLC35D2	solute carrier family 35 member D2	protein coding gene	no	.	1.022	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SCHLAP1_UP_LS0017	chr2:180354860|180367344:+	SCHLAP1	SWI/SNF complex antagonist associated with prostate cancer 1	lncRNA gene	no	.	4.078	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
STX18_LS011	chr4:4425222|4434770:-	STX18	syntaxin 18	protein coding gene	no	ENST00000505286.5;ENST00000306200.6;ENST00000512195.5;ENST00000507908.5	90.606	59.571	42.955	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_USP20_LS0037	chr9:129869002|129869315:+	USP20	ubiquitin specific peptidase 20	protein coding gene	no	.	2.813	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_GAB1_LS0030	chr4:143439887|143440083:+	GAB1	phosphatidylinositol glycan anchor biosynthesis class U	protein coding gene	no	.	4.761	0.622	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_OSBPL1A_LS0049	chr18:24366982|24368287:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	.	2.932	0.334	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
ELP3_LS013	chr8:28107976|28110370:+	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	ENST00000521015.5;ENST00000521570.5;ENST00000256398.12;ENST00000380353.8;ENST00000523760.5;ENST00000524103.5;ENST00000518112.5;ENST00000521938.5;ENST00000520288.5;ENST00000522063.1	16.822	11.683	20.489	0.979(9376)	0.991(696)	0.978(16999)	non tumor-specific	exon_skip	yes
EDN3_LS002	chr20:59301722|59321017:+	EDN3	endothelin 3	protein coding gene	no	ENST00000337938.6;ENST00000311585.11;ENST00000371028.6;ENST00000644821.1;ENST00000371025.7;ENST00000395654.3	8.240	9.289	4.054	0.322(3081)	0.556(390)	0.523(9091)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RN7SL549P_UP_LS0017	chr7:100967412|100969474:-	RN7SL549P	RNA, 7SL, cytoplasmic 549, pseudogene	small non-coding RNA gene	no	.	0.717	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
STX17_LS003	chr9:99907098|99915178:+	STX17	syntaxin 17	protein coding gene	no	ENST00000526607.1	0.162	0.103	0.757	0.396(3790)	0.497(349)	0.17(2950)	non tumor-specific	alt_5prime	yes
FGFR1_LS036	chr8:38428093|38457356:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	.;.	0.807	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
OTOL1_LS003	chr3:161502369|161503026:+	OTOL1	otolin 1	protein coding gene	no	ENST00000327928.4	14.244	0.110	0.851	0.009(88)	0.001(1)	0.014(249)	non tumor-specific	nAS	yes
THAP9-AS1_LS017	chr4:82900223|82900372:-	THAP9-AS1	THAP9 antisense RNA 1	lncRNA gene	no	ENST00000504718.5;ENST00000505028.5	0.548	0.317	1.418	0.757(7251)	0.819(575)	0.69(11986)	non tumor-specific	alt_5prime	yes
UN_SIGLEC1_LS0027	chr20:3703915|3704035:-	SIGLEC1	sialic acid binding Ig like lectin 1	protein coding gene	no	.	2.611	0.468	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
DAAM2_LS024	chr6:39879477|39883962:+	DAAM2	dishevelled associated activator of morphogenesis 2	protein coding gene	no	ENST00000633794.1;ENST00000274867.8;ENST00000538976.5;ENST00000398904.6	14.221	10.453	27.151	0.679(6507)	0.907(637)	0.965(16773)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATXN3_LS0017	chr14:92065496|92066082:+	ATXN3	ataxin 3	protein coding gene	no	.	1.811	0.234	0.000	0.008(79)	0.004(3)	0(0)	non tumor-specific	nAS	no
APOBEC3F_LS005	chr22:39045220|39045428:+	APOBEC3F	apolipoprotein B mRNA editing enzyme catalytic subunit 3F	protein coding gene	no	ENST00000308521.9	6.729	3.412	2.238	0.854(8186)	0.93(653)	0.749(13024)	non tumor-specific	intron_retention	yes
UN_GPBP1_LS0020	chr5:57246353|57247075:+	GPBP1	GC-rich promoter binding protein 1	protein coding gene	no	.	4.011	0.135	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NUP54_LS009	chr4:76130749|76131230:-	NUP54	nucleoporin 54	protein coding gene	no	ENST00000507257.5;ENST00000264883.7;ENST00000502850.5;ENST00000514987.5;ENST00000512151.5	45.041	27.984	30.467	0.987(9459)	0.994(698)	0.978(17004)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PSD3_LS0011	chr8:18610394|18613116:+	PSD3	pleckstrin and Sec7 domain containing 3	protein coding gene	no	.	1.574	0.586	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDC73_LS003	chr1:193125217|193127848:+	CDC73	cell division cycle 73	protein coding gene	yes	ENST00000648071.1;ENST00000482484.1	0.041	0.008	0.633	0.028(265)	0.017(12)	0.067(1163)	non tumor-specific	exon_skip	yes
UN_NKAIN4_LS0033	chr20:63249305|63249423:+	NKAIN4	sodium/potassium transporting ATPase interacting 4	protein coding gene	no	.	1.903	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ATP1B2_LS007	chr17:7654684|7655527:+	ATP1B2	ATPase Na+/K+ transporting subunit beta 2	protein coding gene	no	ENST00000577026.5;ENST00000250111.8	59.275	35.796	7.387	0.595(5704)	0.9(632)	0.91(15811)	non tumor-specific	exon_skip	yes
SRPK3_LS021	chrX:153784213|153784294:+	SRPK3	SRSF protein kinase 3	protein coding gene	no	ENST00000489426.5;ENST00000393786.7;ENST00000370104.5;ENST00000370108.7;ENST00000370101.7;ENST00000370100.5	6.730	3.437	6.902	0.295(2823)	0.251(176)	0.829(14409)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PPP4R1_LS002	chr18:9549338|9550052:-	PPP4R1	protein phosphatase 4 regulatory subunit 1	protein coding gene	no	ENST00000400556.7;ENST00000400555.7;ENST00000582594.5;ENST00000285124.12;ENST00000579609.5;ENST00000578329.1	56.902	34.463	58.133	0.995(9536)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
GTF2IRD2P1_LS010	chr7:73266581|73268979:-	GTF2IRD2P1	GTF2I repeat domain containing 2 pseudogene 1	pseudogene	no	ENST00000620147.4;ENST00000449689.2	5.779	4.359	0.640	0.444(4254)	0.729(512)	0.017(289)	non tumor-specific	nAS	yes
TIMP1_LS001	chrX:47582474|47583408:+	TIMP1	TIMP metallopeptidase inhibitor 1	protein coding gene	no	ENST00000218388.8;ENST00000456754.6	401.100	168.737	397.880	0.927(8886)	0.925(649)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL355375.2_UP_LS0001	chr6:63002738|63056497:-	AL355375.2	-	pseudogene	no	.	1.233	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FSTL4_LS022	chr5:133312777|133316459:-	FSTL4	follistatin like 4	protein coding gene	no	ENST00000265342.11;ENST00000514998.1	6.823	4.333	1.989	0.315(3018)	0.395(277)	0.427(7428)	non tumor-specific	nAS	yes
UN_MYO1D_LS0118	chr17:32828558|32831322:+	MYO1D	myosin ID	protein coding gene	no	.	2.714	0.446	0.000	0.017(167)	0.019(13)	0(0)	non tumor-specific	nAS	no
AC093523.1_LS002	chr5:68960626|68961869:-	AC093523.1	-	lncRNA gene	no	ENST00000503268.1	1.157	0.198	1.108	0.04(380)	0.041(29)	0.142(2468)	non tumor-specific	nAS	yes
ABCA10_LS055	chr17:69222697|69223628:-	ABCA10	ATP binding cassette subfamily A member 10	protein coding gene	no	ENST00000521526.2	0.342	0.178	1.620	0.007(69)	0.114(80)	0.495(8601)	non tumor-specific	exon_skip	yes
UN_LGI4_LS0026	chr19:35134574|35141109:-	LGI4	leucine rich repeat LGI family member 4	protein coding gene	no	.	1.745	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC22A11_LS009	chr11:64565337|64569652:+	SLC22A11	solute carrier family 22 member 11	protein coding gene	no	ENST00000377585.7	0.522	0.570	0.944	0.065(625)	0.088(62)	0.002(43)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NEK6_LS0024	chr9:124286490|124291983:+	NEK6	NIMA related kinase 6	protein coding gene	no	.	0.531	0.156	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CXorf57_LS007	chrX:106633252|106636543:+	CXorf57	RPA1 related single stranded DNA binding protein, X-linked	protein coding gene	no	ENST00000372544.6;ENST00000372548.8;ENST00000461251.5;ENST00000421550.1	4.676	2.495	1.916	0.427(4089)	0.608(427)	0.749(13020)	non tumor-specific	nAS	yes
UN_PRH1-PRR4_LS0015	chr12:10848407|11047020:-	PRH1-PRR4	-	protein coding gene	no	.	2.637	0.763	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PIGF_UP_LS0001	chr2:46683001|46683318:-	PIGF	phosphatidylinositol glycan anchor biosynthesis class F	protein coding gene	no	.	2.942	0.162	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_POLDIP2_LS0054	chr17:28348329|28349033:+	POLDIP2	DNA polymerase delta interacting protein 2	protein coding gene	no	.	0.405	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
DHRS12_LS009	chr13:51771911|51773921:-	DHRS12	dehydrogenase/reductase 12	protein coding gene	no	ENST00000472372.5	0.576	0.388	3.104	0.806(7724)	0.892(626)	0.917(15945)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MALRD1_LS043	chr10:19692554|19790137:+	MALRD1	MAM and LDL receptor class A domain containing 1	protein coding gene	no	ENST00000480707.1	0.214	0.067	1.253	0.115(1098)	0.244(171)	0.351(6102)	non tumor-specific	nAS	yes
WAC_LS009	chr10:28535757|28535919:+	WAC	WW domain containing adaptor with coiled-coil	protein coding gene	no	ENST00000528491.5	0.014	0.017	0.698	0.159(1522)	0.239(168)	0.183(3173)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AC018688.1_UP_LS0070	chr20:30405306|30405655:+	AC018688.1	-	pseudogene	no	.	3.125	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRPC6_LS0006	chr11:101489101|101491551:-	TRPC6	transient receptor potential cation channel subfamily C member 6	protein coding gene	no	.	4.883	1.549	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_TPT1_LS0057	chr13:45337342|45339559:+	TPT1	tumor protein, translationally-controlled 1	protein coding gene	no	.	63.081	8.908	0.000	0.01(92)	0.009(6)	0(0)	non tumor-specific	nAS	no
MAGEC3_LS004	chrX:141895407|141896183:+	MAGEC3	MAGE family member C3	protein coding gene	no	ENST00000483584.5;ENST00000544766.5	2.993	0.000	1.490	0.014(130)	0(0)	0.271(4702)	non tumor-specific	exon_skip	yes
UN_AP001605.1_UP_LS0010	chr21:27586087|27812080:-	AP001605.1	-	lncRNA gene	no	.	3.067	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL158168.1_UP_LS0001	chr10:14487396|14487706:+	AL158168.1	-	lncRNA gene	no	.	2.374	0.159	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC011481.2_UP_LS0015	chr19:44916229|44926961:-	AC011481.2	-	lncRNA gene	no	.	3.416	7.402	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	nAS	no
NXF4_LS014	chrX:102566624|102566740:+	NXF4	nuclear RNA export factor 4 pseudogene	pseudogene	no	ENST00000360035.6	2.725	0.000	0.793	0.001(5)	0(0)	0.039(682)	non tumor-specific	nAS	yes
MRE11_LS008	chr11:94447438|94456276:-	MRE11	MRE11 homolog, double strand break repair nuclease	protein coding gene	no	ENST00000323929.7;ENST00000407439.7;ENST00000323977.7;ENST00000393241.8	25.620	10.609	15.292	0.965(9242)	0.977(686)	0.977(16988)	non tumor-specific	exon_skip	yes
CDYL_LS003	chr6:4733248|4734762:+	CDYL	chromodomain Y like	protein coding gene	no	ENST00000491864.1	1.213	0.000	0.624	0.002(17)	0(0)	0.001(22)	non tumor-specific	nAS	yes
UN_SYNPO2_LS0014	chr4:118955936|118962047:-	SYNPO2	synaptopodin 2	protein coding gene	yes	.	6.807	4.058	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
DHX58_LS001	chr17:42101946|42102216:-	DHX58	DExH-box helicase 58	protein coding gene	no	ENST00000589979.1;ENST00000251642.7;ENST00000592024.1	33.742	19.809	24.765	0.984(9424)	0.986(692)	0.979(17015)	non tumor-specific	exon_skip	yes
SMOC1_LS001	chr14:69864214|69952138:+	SMOC1	SPARC related modular calcium binding 1	protein coding gene	no	ENST00000555917.1	0.981	0.000	0.678	0.001(10)	0(0)	0.007(113)	non tumor-specific	nAS	yes
UN_FRG1GP_UP_LS0071	chr22:12146121|12147978:+	FRG1GP	FSHD region gene 1 family member G, pseudogene	pseudogene	no	.	3.053	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	nAS	no
C22orf34_LS001	chr22:49416035|49416602:-	C22orf34	chromosome 22 open reading frame 34	lncRNA gene	no	ENST00000414287.5	0.844	0.120	0.653	0.008(74)	0.004(3)	0.02(345)	non tumor-specific	exon_skip	yes
UN_HLA-DPB1_LS0026	chr6:33084014|33084950:+	HLA-DPB1	major histocompatibility complex, class II, DP beta 1	protein coding gene	no	.	5.738	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
RALA_LS001	chr7:39623825|39686631:+	RALA	RAS like proto-oncogene A	protein coding gene	no	ENST00000005257.6	30.231	16.831	19.575	0.971(9304)	0.976(685)	0.978(16997)	non tumor-specific	exon_skip	yes
NFKBID_LS012	chr19:35897058|35897651:-	NFKBID	NFKB inhibitor delta	protein coding gene	no	ENST00000641389.1;ENST00000396901.5;ENST00000606253.5;ENST00000586361.5;ENST00000588497.2	2.751	0.831	4.958	0.847(8115)	0.806(566)	0.914(15882)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LRP2_LS023	chr2:169168676|169169702:-	LRP2	LDL receptor related protein 2	protein coding gene	no	ENST00000649046.1;ENST00000263816.7;ENST00000650252.1;ENST00000649153.1	18.360	35.304	4.456	0.278(2668)	0.528(371)	0.275(4778)	non tumor-specific	exon_skip	yes
MED14_LS034	chrX:40726851|40729319:-	MED14	mediator complex subunit 14	protein coding gene	no	ENST00000324817.5;ENST00000482034.5;ENST00000495865.1;ENST00000463072.1	10.516	6.904	5.305	0.914(8753)	0.954(670)	0.935(16256)	non tumor-specific	nAS	yes
AC096887.1_LS009	chr3:53077828|53092369:-	AC096887.1	-	protein coding gene	no	ENST00000607283.5	1.137	0.052	0.709	0.003(24)	0.001(1)	0.161(2796)	non tumor-specific	mutex_exons	yes
UN_VHL_LS0001	chr3:10141883|10142763:+	VHL	von Hippel-Lindau tumor suppressor	protein coding gene	yes	.	0.278	0.050	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC022418.1_UP_LS0022	chr5:25572560|25591766:+	AC022418.1	-	lncRNA gene	no	.	2.703	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZWINT_LS0004	chr10:56358148|56358377:-	ZWINT	ZW10 interacting kinetochore protein	protein coding gene	no	.	6.525	0.778	0.000	0.032(306)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_XRCC1_LS0011	chr19:43552902|43552982:-	XRCC1	X-ray repair cross complementing 1	protein coding gene	no	.	3.642	0.791	0.000	0.063(603)	0.036(25)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NLGN1-AS1_UP_LS0002	chr3:174302833|174339339:-	NLGN1-AS1	NLGN1 antisense RNA 1	lncRNA gene	no	.	2.371	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ITPK1_LS014	chr14:93016801|93066185:-	ITPK1	inositol-tetrakisphosphate 1-kinase	protein coding gene	no	ENST00000556185.5	0.048	0.012	0.724	0.83(7954)	0.87(611)	0.056(969)	non tumor-specific	nAS	yes
ACBD3_LS004	chr1:226154833|226161531:-	ACBD3	acyl-CoA binding domain containing 3	protein coding gene	no	ENST00000464927.1	1.029	0.418	1.017	0.861(8248)	0.865(607)	0.543(9440)	non tumor-specific	exon_skip	yes
UN_RNFT2_LS0031	chr12:116833941|116849314:+	RNFT2	ring finger protein, transmembrane 2	protein coding gene	no	.	1.015	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_GTF2IP23_LS0001	chr7:66880826|66882893:+	GTF2IP23	general transcription factor IIi pseudogene 23	pseudogene	no	.	1.435	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CERS6-AS1_LS008	chr2:168775315|168783955:-	CERS6-AS1	CERS6 antisense RNA 1	lncRNA gene	no	ENST00000599755.5	0.586	0.000	0.693	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_AL162151.1_UP_LS0002	chr14:98973071|98973343:+	AL162151.1	-	lncRNA gene	no	.	1.780	0.346	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
FCGR2C_LS008	chr1:161588442|161589562:+	FCGR2C	Fc fragment of IgG receptor IIc (gene/pseudogene)	pseudogene	no	ENST00000502411.5;ENST00000543859.5;ENST00000466542.6;ENST00000465075.6;ENST00000473530.6;ENST00000611236.1;ENST00000473712.6	3.280	2.705	2.302	0.829(7939)	0.942(661)	0.63(10955)	non tumor-specific	alt_3prime	yes
DNAH14_LS079	chr1:225301030|225303156:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000445597.6;ENST00000430092.5;ENST00000439375.6;ENST00000638635.1;ENST00000327794.10	2.422	0.000	0.705	0.002(17)	0(0)	0.034(589)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC068587.7_UP_LS0002	chr8:12659370|12665909:-	AC068587.7	-	pseudogene	no	.	2.446	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
ARID1A_LS023	chr1:26773898|26774116:+	ARID1A	AT-rich interaction domain 1A	protein coding gene	yes	ENST00000636794.1	2.313	0.000	0.614	0(1)	0(0)	0.011(188)	non tumor-specific	nAS	yes
AC005537.1_LS015	chr7:43044620|43059095:-	AC005537.1	-	lncRNA gene	no	ENST00000609382.3;ENST00000630282.2	1.097	0.129	0.880	0.184(1762)	0.074(52)	0.093(1620)	non tumor-specific	nAS	yes
UN_EXOC3_LS0029	chr5:459415|461960:+	EXOC3	exocyst complex component 3	protein coding gene	no	.	3.747	0.104	0.000	0.029(275)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TNK1_LS011	chr17:7384754|7386561:+	TNK1	tyrosine kinase non receptor 1	protein coding gene	yes	ENST00000570896.5;ENST00000576812.5;ENST00000577009.1;ENST00000576136.1	8.645	7.757	6.777	0.913(8747)	0.984(691)	0.889(15451)	non tumor-specific	alt_5prime	yes
UN_LINC01749_LS0004	chr20:63009479|63032288:-	LINC01749	long intergenic non-protein coding RNA 1749	lncRNA gene	no	.	1.003	0.500	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CACNA1A_LS0004	chr19:13207366|13207464:+	CACNA1A	calcium voltage-gated channel subunit alpha1 A	protein coding gene	no	.	0.849	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC2A9_LS0053	chr4:9882143|9887567:-	SLC2A9	solute carrier family 2 member 9	protein coding gene	no	.	4.801	1.725	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SPATA16_LS0012	chr3:173041526|173051224:+	SPATA16	spermatogenesis associated 16	protein coding gene	no	.	2.713	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ODF2_LS037	chr9:128485474|128487890:+	ODF2	outer dense fiber of sperm tails 2	protein coding gene	no	ENST00000393533.6;ENST00000351030.7;ENST00000372814.7;ENST00000604420.5;ENST00000448249.7;ENST00000393527.7;ENST00000434106.7;ENST00000546203.5;ENST00000372791.7;ENST00000444119.6;ENST00000372807.9	56.827	23.101	34.597	0.995(9536)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_EGLN1_LS0003	chr1:231365541|231365574:+	EGLN1	egl-9 family hypoxia inducible factor 1	protein coding gene	yes	.	1.868	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP1G2_LS0032	chr14:23561873|23562303:+	AP1G2	adaptor related protein complex 1 subunit gamma 2	protein coding gene	no	.	5.702	0.385	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
HELZ_LS040	chr17:67239489|67243784:-	HELZ	helicase with zinc finger	protein coding gene	no	ENST00000358691.9;ENST00000580168.5;ENST00000417253.7;ENST00000580662.5;ENST00000584641.5;ENST00000581159.5;ENST00000580963.1	3.264	2.047	3.336	0.746(7145)	0.863(606)	0.905(15732)	non tumor-specific	exon_skip	yes
UN_POR_LS0053	chr7:75985814|75986044:-	POR	cytochrome p450 oxidoreductase	protein coding gene	no	.	1.215	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LCN12_LS0043	chr9:136954463|136954575:-	LCN12	lipocalin 12	protein coding gene	no	.	2.968	0.659	0.000	0.008(79)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_PPOX_LS0029	chr1:161171859|161172001:+	PPOX	protoporphyrinogen oxidase	protein coding gene	no	.	2.189	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC099560.1_LS002	chr3:40773986|40862392:+	AC099560.1	-	lncRNA gene	no	ENST00000412811.1	0.610	0.176	0.711	0.042(398)	0.051(36)	0.076(1323)	non tumor-specific	nAS	yes
PSD4_LS026	chr2:113198884|113199083:+	PSD4	pleckstrin and Sec7 domain containing 4	protein coding gene	no	ENST00000245796.10;ENST00000418251.6;ENST00000441564.7;ENST00000409656.5;ENST00000460725.5	19.673	14.678	9.288	0.964(9234)	0.976(685)	0.904(15720)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
POLD2_LS018	chr7:44117742|44117943:-	POLD2	DNA polymerase delta 2, accessory subunit	protein coding gene	no	ENST00000610533.4;ENST00000406581.6;ENST00000223361.7;ENST00000452185.5;ENST00000433715.5;ENST00000463464.5;ENST00000470867.5;ENST00000464871.1;ENST00000461116.1;ENST00000467469.1;ENST00000456038.5;ENST00000418438.1	129.371	63.282	83.519	0.997(9553)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
TNIP1_LS025	chr5:151033799|151035002:-	TNIP1	TNFAIP3 interacting protein 1	protein coding gene	no	ENST00000520931.5;ENST00000389378.6;ENST00000315050.11;ENST00000523338.5;ENST00000522574.5;ENST00000522226.5;ENST00000521591.5;ENST00000518977.5	76.654	67.771	102.896	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SLC13A4_LS020	chr7:135727624|135729115:-	SLC13A4	solute carrier family 13 member 4	protein coding gene	no	ENST00000378428.3	0.037	0.014	0.671	0.008(76)	0.001(1)	0.006(100)	non tumor-specific	nAS	yes
PRAME_LS006	chr22:22551089|22556812:-	PRAME	PRAME nuclear receptor transcriptional regulator	protein coding gene	yes	ENST00000398743.6;ENST00000492657.5;ENST00000398741.5;ENST00000543184.5;ENST00000405655.7;ENST00000402697.5;ENST00000439106.5;ENST00000420709.5;ENST00000406503.1;ENST00000403441.1	38.217	0.948	0.801	0.504(4828)	0.214(150)	0.238(4143)	non tumor-specific	alt_5prime;exon_skip	yes
HERC2_LS061	chr15:28215802|28218489:-	HERC2	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000261609.11	8.389	6.373	6.544	0.795(7613)	0.877(616)	0.938(16313)	non tumor-specific	alt_3prime;alt_5prime	yes
AC073218.2_LS002	chr2:34700678|34700809:-	AC073218.2	-	lncRNA gene	no	ENST00000605962.2	1.319	0.000	0.676	0.002(21)	0(0)	0.009(158)	non tumor-specific	nAS	yes
SF1_LS006	chr11:64766155|64766900:-	SF1	splicing factor 1	protein coding gene	no	ENST00000377390.7;ENST00000334944.9;ENST00000413725.5;ENST00000433274.6;ENST00000486867.1	99.313	56.099	128.783	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
BMS1_LS018	chr10:42820424|42820508:+	BMS1	BMS1 ribosome biogenesis factor	protein coding gene	no	ENST00000374518.5	53.861	27.910	34.190	0.992(9502)	0.997(700)	0.979(17015)	non tumor-specific	alt_5prime;exon_skip	yes
ANKRD13C_LS017	chr1:70324957|70336058:-	ANKRD13C	ankyrin repeat domain 13C	protein coding gene	no	ENST00000370944.8	18.548	14.526	11.390	0.939(8997)	0.983(690)	0.967(16810)	non tumor-specific	exon_skip	yes
UN_FAM173B_LS0011	chr5:10239356|10240337:-	FAM173B	ATP synthase c subunit lysine N-methyltransferase	protein coding gene	no	.	0.640	0.008	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_BBS4_LS0012	chr15:72734982|72735077:+	BBS4	Bardet-Biedl syndrome 4	protein coding gene	no	.	2.846	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC9A8_LS002	chr20:49815189|49823061:+	SLC9A8	solute carrier family 9 member A8	protein coding gene	no	ENST00000417961.5;ENST00000361573.2	9.818	7.510	7.441	0.865(8284)	0.956(671)	0.969(16849)	non tumor-specific	exon_skip	yes
UN_NDUFA3P4_UP_LS0006	chr15:90362641|90385308:+	NDUFA3P4	NADH:ubiquinone oxidoreductase subunit A3 pseudogene 4	pseudogene	no	.	0.933	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PAPPA2_LS009	chr1:176695859|176699100:+	PAPPA2	pappalysin 2	protein coding gene	no	ENST00000367662.4	4.568	3.160	0.891	0.058(557)	0.254(178)	0.228(3970)	non tumor-specific	nAS	yes
UN_ETS1_LS0033	chr11:128573144|128587497:-	ETS1	ETS proto-oncogene 1, transcription factor	protein coding gene	yes	.	3.490	0.324	0.000	0.018(171)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HCLS1_LS004	chr3:121633171|121634207:-	HCLS1	hematopoietic cell-specific Lyn substrate 1	protein coding gene	no	ENST00000314583.7;ENST00000473883.5;ENST00000428394.6;ENST00000495491.5	105.773	42.780	36.580	0.994(9524)	0.996(699)	0.978(17000)	non tumor-specific	nAS	yes
RPL12P42_LS001	chr19:13157982|13158314:-	RPL12P42	ribosomal protein L12 pseudogene 42	pseudogene	no	ENST00000481802.1	0.447	0.000	0.593	0(1)	0(0)	0.03(521)	non tumor-specific	nAS	yes
ABLIM1_LS036	chr10:114571406|114575416:-	ABLIM1	actin binding LIM protein 1	protein coding gene	no	ENST00000392955.7;ENST00000533213.6;ENST00000369252.8;ENST00000369256.6;ENST00000277895.9;ENST00000649363.1;ENST00000481974.1	7.735	14.670	14.962	0.804(7700)	0.96(674)	0.937(16282)	non tumor-specific	exon_skip	yes
UN_AC124657.1_UP_LS0015	chr11:30361451|30361791:-	AC124657.1	-	lncRNA gene	no	.	2.416	0.626	0.000	0.019(181)	0.03(21)	0(0)	non tumor-specific	nAS	no
UN_ZNF341_LS0007	chr20:33740785|33740902:+	ZNF341	zinc finger protein 341	protein coding gene	no	.	0.642	0.410	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TMC6_LS0063	chr17:78119396|78121013:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	.	5.249	1.191	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LGALS1_LS0033	chr22:37677058|37679630:-	LGALS1	galectin 1	protein coding gene	no	.	5.780	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
C16orf71_LS002	chr16:4734698|4736464:+	C16orf71	chromosome 16 open reading frame 71	protein coding gene	no	ENST00000299320.9;ENST00000590191.1;ENST00000586256.1	2.501	0.893	0.935	0.322(3086)	0.456(320)	0.477(8287)	non tumor-specific	exon_skip	yes
AL132712.1_LS002	chr14:103870012|103879344:-	AL132712.1	-	lncRNA gene	no	ENST00000555967.1	0.987	0.601	0.793	0.062(591)	0.094(66)	0.083(1437)	non tumor-specific	nAS	yes
ANKRD20A21P_LS008	chr20:30695944|30698736:-	ANKRD20A21P	ankyrin repeat domain 20 family member A21, pseudogene	pseudogene	no	ENST00000623715.2	0.830	0.359	0.704	0.001(7)	0.001(1)	0.043(752)	non tumor-specific	nAS	yes
UN_EMC10_LS0162	chr19:50482654|50482737:-	EMC10	ER membrane protein complex subunit 10	protein coding gene	no	.	2.718	0.571	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
GORASP1_LS014	chr3:39100503|39100788:-	GORASP1	golgi reassembly stacking protein 1	protein coding gene	no	ENST00000452389.6;ENST00000470910.5;ENST00000466443.1	0.274	0.435	2.789	0.829(7942)	0.913(641)	0.89(15475)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
FAM53B_LS003	chr10:124682379|124696158:-	FAM53B	family with sequence similarity 53 member B	protein coding gene	no	ENST00000337318.7;ENST00000392754.7;ENST00000280780.6	23.419	14.467	12.893	0.944(9042)	0.936(657)	0.974(16927)	non tumor-specific	nAS	yes
UN_PPIAP76_UP_LS0016	chr4:123554063|123652787:+	PPIAP76	peptidylprolyl isomerase A pseudogene 76	pseudogene	no	.	2.619	0.450	0.000	0.01(96)	0.004(3)	0(0)	non tumor-specific	nAS	no
HEG1_LS008	chr3:124990986|124997689:-	HEG1	heart development protein with EGF like domains 1	protein coding gene	no	ENST00000311127.8;ENST00000487661.1;ENST00000650592.1	12.547	14.136	11.633	0.865(8285)	0.964(677)	0.948(16472)	non tumor-specific	nAS	yes
BRAF_LS008	chr7:140749418|140753275:-	BRAF	B-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000496384.7;ENST00000644120.1;ENST00000644969.1;ENST00000646891.1;ENST00000644905.1;ENST00000642228.1;ENST00000288602.11;ENST00000646730.1;ENST00000479537.6;ENST00000644650.1;ENST00000497784.2	9.974	5.228	6.654	0.966(9253)	0.983(690)	0.968(16820)	non tumor-specific	exon_skip	yes
UN_WDR60_LS0065	chr7:158910403|158910433:-	WDR60	dynein 2 intermediate chain 1	protein coding gene	no	.	1.741	0.373	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA8_LS0018	chr7:30074132|30078594:+	PLEKHA8	pleckstrin homology domain containing A8	protein coding gene	no	.	2.745	0.155	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_LYPLA1_LS0005	chr8:54048118|54051038:-	LYPLA1	lysophospholipase 1	protein coding gene	no	.	18.098	2.129	0.000	0.008(79)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
KDM6B_LS004	chr17:7840024|7844901:+	KDM6B	lysine demethylase 6B	protein coding gene	no	ENST00000254846.9;ENST00000448097.6;ENST00000254846.9;ENST00000448097.6	3.751	3.203	4.671	0.865(8291)	0.933(655)	0.927(16111)	non tumor-specific	alt_5prime;exon_skip	yes
AKAP1_LS005	chr17:57085866|57105441:+	AKAP1	A-kinase anchoring protein 1	protein coding gene	no	.;.	1.868	0.172	0.000	0.001(8)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TRMT2B_LS0033	chrX:101038051|101051784:-	TRMT2B	tRNA methyltransferase 2 homolog B	protein coding gene	no	.	1.971	0.113	0.000	0.008(76)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HDAC10_LS028	chr22:50248859|50249103:-	HDAC10	histone deacetylase 10	protein coding gene	no	ENST00000483222.5;ENST00000498366.5	0.100	0.209	2.021	0.093(891)	0.094(66)	0.82(14252)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_KCNJ12_LS0014	chr17:21418307|21418364:+	KCNJ12	potassium inwardly rectifying channel subfamily J member 12	protein coding gene	no	.	3.082	0.562	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
UN_MAPK8IP2_LS0014	chr22:50605677|50605825:+	MAPK8IP2	mitogen-activated protein kinase 8 interacting protein 2	protein coding gene	no	.	13.159	5.296	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC092078.2_LS0033	chr15:48004085|48005832:-	AC092078.2	-	lncRNA gene	no	.	1.859	2.212	0.000	0.011(108)	0.024(17)	0(0)	non tumor-specific	nAS	no
CILP_LS001	chr15:65199099|65201872:-	CILP	cartilage intermediate layer protein	protein coding gene	no	ENST00000261883.5	8.387	12.256	7.130	0.4(3832)	0.679(477)	0.806(14012)	non tumor-specific	nAS	yes
UN_JDP2_UP_LS0014	chr14:75352442|75359874:+	JDP2	Jun dimerization protein 2	protein coding gene	yes	.	2.229	0.108	0.000	0.01(98)	0.001(1)	0(0)	non tumor-specific	nAS	no
ODF2_LS018	chr9:128459657|128460553:+	ODF2	outer dense fiber of sperm tails 2	protein coding gene	no	.;.	2.483	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FAM189B_LS0063	chr1:155251352|155251502:-	FAM189B	family with sequence similarity 189 member B	protein coding gene	yes	.	3.230	0.148	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_TPRG1_LS0027	chr3:189023946|189033303:+	TPRG1	tumor protein p63 regulated 1	protein coding gene	no	.	1.679	0.167	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_RF00002_UP_LS0037	chr20:30550053|30579316:-	RF00002	-	small non-coding RNA gene	no	.	3.667	0.491	0.000	0.007(65)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL049612.1_UP_LS0011	chr6:169977052|169977768:-	AL049612.1	-	lncRNA gene	no	.	4.226	0.288	0.000	0.033(320)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_RNPEPL1_LS0118	chr2:240578253|240578284:-	RNPEPL1	arginyl aminopeptidase like 1	protein coding gene	no	.	6.846	0.042	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCNY_LS0029	chr10:35336074|35336220:-	CCNY	cyclin Y	protein coding gene	no	.	1.274	0.472	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KAZN_LS0220	chr1:15031552|15034749:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	1.883	0.260	0.000	0.007(70)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
RYR1_LS071	chr19:38519454|38523028:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7;ENST00000594335.5;ENST00000599547.5	5.338	16.477	2.222	0.074(708)	0.056(39)	0.697(12110)	non tumor-specific	nAS	yes
LGR6_LS001	chr1:202194201|202225423:+	LGR6	leucine rich repeat containing G protein-coupled receptor 6	protein coding gene	no	ENST00000367278.7	1.937	0.770	1.930	0.298(2859)	0.556(390)	0.51(8863)	non tumor-specific	exon_skip	yes
SLC4A10_LS005	chr2:161622371|161624111:+	SLC4A10	solute carrier family 4 member 10	protein coding gene	no	ENST00000605990.5	4.420	0.000	0.819	0(1)	0(0)	0.002(29)	non tumor-specific	exon_skip	yes
ADAMTS9_LS038	chr3:64655691|64655792:-	ADAMTS9	ADAM metallopeptidase with thrombospondin type 1 motif 9	protein coding gene	yes	ENST00000498707.5;ENST00000482490.5;ENST00000475557.5;ENST00000459780.1	3.198	2.696	3.186	0.563(5393)	0.726(510)	0.724(12587)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PLEKHG3_LS0043	chr14:64737972|64738009:+	PLEKHG3	pleckstrin homology and RhoGEF domain containing G3	protein coding gene	no	.	4.658	0.493	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACNA1G-AS1_LS003	chr17:50557458|50561928:-	CACNA1G-AS1	CACNA1G antisense RNA 1	lncRNA gene	no	ENST00000505793.1	0.242	0.170	0.848	0.049(466)	0.066(46)	0.056(978)	non tumor-specific	nAS	yes
UN_IRGM_LS0009	chr5:150881456|150881921:-	IRGM	immunity related GTPase M	protein coding gene	no	.	3.595	0.000	0.000	0.006(53)	0(0)	0(0)	non tumor-specific	nAS	no
TCP11L1_LS020	chr11:33081224|33084950:+	TCP11L1	t-complex 11 like 1	protein coding gene	no	ENST00000527661.5	0.227	0.075	0.696	0.05(481)	0.041(29)	0.108(1882)	non tumor-specific	exon_skip	yes
KC6_LS002	chr18:41481267|41481882:-	KC6	-	lncRNA gene	no	ENST00000592302.5	0.368	0.070	0.848	0.116(1111)	0.021(15)	0.175(3041)	non tumor-specific	nAS	yes
UN_CENPX_LS0052	chr17:82019204|82019293:-	CENPX	centromere protein X	protein coding gene	no	.	16.869	9.473	0.000	0.022(215)	0.01(7)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CARD11_LS017	chr7:2934629|2937037:-	CARD11	caspase recruitment domain family member 11	protein coding gene	yes	ENST00000396946.8	18.755	5.820	1.971	0.652(6246)	0.605(425)	0.698(12134)	non tumor-specific	alt_5prime	yes
TRPM4_LS038	chr19:49211087|49211164:+	TRPM4	transient receptor potential cation channel subfamily M member 4	protein coding gene	no	ENST00000252826.9;ENST00000598697.5;ENST00000595519.5;ENST00000427978.6;ENST00000598502.5;ENST00000596338.5;ENST00000595071.5;ENST00000599459.1	111.789	53.437	40.107	0.987(9460)	0.994(698)	0.969(16851)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FGGY_LS011	chr1:59318708|59321536:+	FGGY	FGGY carbohydrate kinase domain containing	protein coding gene	no	ENST00000582567.1;ENST00000634364.1	0.152	0.367	0.642	0.014(136)	0.014(10)	0.052(905)	non tumor-specific	exon_skip;mutex_exons	yes
AC002310.1_LS001	chr16:30535480|30535818:+	AC002310.1	-	lncRNA gene	no	ENST00000569752.1	0.294	0.071	0.642	0.038(360)	0.033(23)	0.016(279)	non tumor-specific	nAS	yes
IGHV1-69-2_LS001	chr14:106737416|106737502:-	IGHV1-69-2	immunoglobulin heavy variable 1-69-2	no	no	ENST00000632209.1	29.078	10.135	2.335	0.167(1602)	0.194(136)	0.203(3534)	non tumor-specific	nAS	yes
TBC1D5_LS029	chr3:17508605|17518902:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	ENST00000415814.6;ENST00000428355.5;ENST00000497531.5;ENST00000444471.5	0.161	0.156	1.280	0.487(4663)	0.714(501)	0.644(11194)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ANO1_LS029	chr11:70163340|70165470:+	ANO1	anoctamin 1	protein coding gene	no	ENST00000355303.9;ENST00000530676.5;ENST00000531349.5	15.450	15.465	15.489	0.842(8071)	0.974(684)	0.856(14876)	non tumor-specific	alt_5prime	yes
UN_USP37_LS0009	chr2:218476981|218478707:-	USP37	ubiquitin specific peptidase 37	protein coding gene	no	.	0.984	0.291	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NFU1_LS014	chr2:69423717|69429904:-	NFU1	NFU1 iron-sulfur cluster scaffold	protein coding gene	no	ENST00000419370.5	0.042	0.043	0.899	0.605(5792)	0.687(482)	0.5(8691)	non tumor-specific	exon_skip	yes
CHPF_LS002	chr2:219541125|219541616:-	CHPF	chondroitin polymerizing factor	protein coding gene	no	ENST00000243776.10;ENST00000535926.2	159.881	72.784	43.330	0.993(9517)	0.997(700)	0.973(16917)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL669831.3_LS0174	chr1:629337|633976:-	AL669831.3	-	pseudogene	no	.	33.133	10.677	0.000	0.017(161)	0.024(17)	0(0)	non tumor-specific	nAS	no
FAM157C_LS009	chr16:90134384|90136542:+	FAM157C	family with sequence similarity 157 member C	lncRNA gene	no	ENST00000563357.1	3.471	1.333	0.768	0.372(3561)	0.385(270)	0.201(3492)	non tumor-specific	nAS	yes
CASP8_LS033	chr2:201272942|201276827:+	CASP8	caspase 8	protein coding gene	yes	ENST00000392258.7	0.341	0.173	1.189	0.423(4048)	0.434(305)	0.445(7728)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CDCA7_LS0002	chr2:173355254|173358712:+	CDCA7	cell division cycle associated 7	protein coding gene	no	.	0.959	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SON_LS0011	chr21:33550100|33550220:+	SON	SON DNA and RNA binding protein	protein coding gene	no	.	8.044	0.127	0.000	0.021(200)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TNS1_LS020	chr2:217831547|217835091:-	TNS1	tensin 1	protein coding gene	no	ENST00000646520.1;ENST00000171887.8;ENST00000446688.5;ENST00000611415.4;ENST00000615025.4;ENST00000419504.5;ENST00000430930.5	38.446	71.289	58.829	0.868(8319)	0.983(690)	0.975(16955)	non tumor-specific	exon_skip	yes
MARCH2_LS009	chr19:8422016|8426609:+	MARCH2	membrane associated ring-CH-type finger 2	protein coding gene	no	ENST00000381035.8;ENST00000595142.5;ENST00000601724.5;ENST00000215555.6;ENST00000602117.1;ENST00000594796.1	27.380	24.599	91.523	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_RHOXF1P1_LS0007	chrX:119999767|120010719:-	RHOXF1P1	Rhox homeobox family member 1 pseudogene 1	pseudogene	no	.	2.187	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
RYR3_LS043	chr15:33701080|33706919:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1	3.753	1.446	1.671	0.023(221)	0.058(41)	0.492(8544)	non tumor-specific	nAS	yes
ZNF48_LS002	chr16:30378410|30395780:+	ZNF48	zinc finger protein 48	protein coding gene	no	ENST00000528032.5	0.003	0.052	0.671	0.185(1773)	0.158(111)	0.006(102)	non tumor-specific	nAS	yes
SERPINE2_LS015	chr2:223998342|224039099:-	SERPINE2	serpin family E member 2	protein coding gene	no	.;.	9.450	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
LINC02388_LS006	chr12:58609549|58616935:-	LINC02388	long intergenic non-protein coding RNA 2388	lncRNA gene	no	ENST00000550678.1	1.121	0.000	0.656	0(1)	0(0)	0.007(125)	non tumor-specific	nAS	yes
UN_MRTFA_LS0017	chr22:40417493|40418366:-	MRTFA	myocardin related transcription factor A	protein coding gene	no	.	3.640	0.380	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_RPL23AP7_LS0019	chr2:113625729|113626881:-	RPL23AP7	ribosomal protein L23a pseudogene 7	pseudogene	no	.	8.784	2.619	0.000	0.096(915)	0.064(45)	0(0)	non tumor-specific	nAS	no
CLTA_LS007	chr9:36197588|36198979:+	CLTA	clathrin light chain A	protein coding gene	no	ENST00000433436.6;ENST00000538225.5;ENST00000345519.9;ENST00000464497.5;ENST00000470744.5;ENST00000242285.10;ENST00000396603.6	369.689	176.442	264.150	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ROCK2_LS009	chr2:11197348|11197526:-	ROCK2	Rho associated coiled-coil containing protein kinase 2	protein coding gene	no	ENST00000315872.10;ENST00000616279.4;ENST00000401753.5	28.293	26.692	28.766	0.938(8991)	0.976(685)	0.972(16890)	non tumor-specific	nAS	yes
DDX19A_LS008	chr16:70355535|70361418:+	DDX19A	DEAD-box helicase 19A	protein coding gene	no	ENST00000569319.5	0.213	0.000	0.732	0.024(233)	0.02(14)	0.24(4165)	non tumor-specific	exon_skip	yes
UN_EPB41L4A_LS0041	chr5:112250685|112256863:+	EPB41L4A	erythrocyte membrane protein band 4.1 like 4A	protein coding gene	no	.	6.937	1.461	0.000	0.013(124)	0.031(22)	0(0)	non tumor-specific	nAS	no
CES5AP1_LS009	chr22:23382279|23387696:-	CES5AP1	carboxylesterase 5A pseudogene 1	pseudogene	no	ENST00000415114.1	0.986	0.277	1.099	0.04(382)	0.027(19)	0.163(2825)	non tumor-specific	nAS	yes
MAP2K3_LS010	chr17:21295769|21296086:+	MAP2K3	mitogen-activated protein kinase kinase 3	protein coding gene	no	ENST00000529517.1;ENST00000483928.6;ENST00000613338.4	0.095	0.031	1.177	0.447(4278)	0.578(406)	0.507(8805)	non tumor-specific	exon_skip	yes
UN_RABL2A_UP_LS0001	chr2:113583928|113595063:+	RABL2A	RAB, member of RAS oncogene family like 2A	protein coding gene	no	.	0.990	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
PCGF2_LS018	chr17:38739682|38748196:-	PCGF2	polycomb group ring finger 2	protein coding gene	yes	ENST00000618506.1	0.079	0.000	0.690	0.009(88)	0.001(1)	0.02(349)	non tumor-specific	exon_skip	yes
KRT16P6_LS001	chr17:16818239|16818801:-	KRT16P6	keratin 16 pseudogene 6	pseudogene	no	ENST00000417510.5;ENST00000584481.1;ENST00000425692.6	42.949	5.658	2.199	0.215(2058)	0.162(114)	0.554(9631)	non tumor-specific	nAS	yes
BPNT1_LS006	chr1:220062954|220067302:-	BPNT1	3'(2'), 5'-bisphosphate nucleotidase 1	protein coding gene	no	ENST00000544404.5;ENST00000414869.6;ENST00000322067.11;ENST00000469520.6;ENST00000463953.5;ENST00000498791.6;ENST00000480959.6	31.979	23.470	19.928	0.996(9543)	0.997(700)	0.977(16989)	non tumor-specific	exon_skip	yes
ZNF530_LS004	chr19:57600134|57604322:+	ZNF530	zinc finger protein 530	protein coding gene	no	.;.	1.589	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
HTT_LS082	chr4:3233353|3235284:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10;ENST00000510626.5	51.848	30.616	39.355	0.992(9506)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MTERF4_LS011	chr2:241090449|241099396:-	MTERF4	mitochondrial transcription termination factor 4	protein coding gene	no	ENST00000495694.5	0.026	0.021	0.647	0.037(350)	0.05(35)	0.054(945)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TTC13_LS0006	chr1:230920592|230921421:-	TTC13	tetratricopeptide repeat domain 13	protein coding gene	no	.	3.125	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	alt_3prime	no
MDN1_LS085	chr6:89749751|89750354:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	ENST00000369393.7;ENST00000629399.2;ENST00000439638.1	4.269	2.509	2.137	0.444(4256)	0.645(453)	0.785(13652)	non tumor-specific	alt_5prime	yes
UN_AC092754.2_UP_LS0006	chr15:59536527|59543879:-	AC092754.2	-	pseudogene	no	.	3.343	0.047	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC068633.1_LS0003	chr3:118305385|118309304:-	AC068633.1	-	lncRNA gene	no	.	2.819	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_S100A10_LS0012	chr1:151983186|151983235:+	S100A10	S100 calcium binding protein A10	protein coding gene	no	.	2.683	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NVL_LS0034	chr1:224313151|224313683:-	NVL	nuclear VCP like	protein coding gene	no	.	0.881	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP003108.2_LS0058	chr11:61468714|61472745:+	AP003108.2	-	protein coding gene	no	.	4.306	2.451	0.000	0.271(2599)	0.326(229)	0(0)	non tumor-specific	exon_skip	no
NMU_LS017	chr4:55630460|55636544:-	NMU	neuromedin U	protein coding gene	no	ENST00000515325.5	0.175	0.019	0.698	0.202(1935)	0.068(48)	0.03(519)	non tumor-specific	nAS	yes
UN_USP6NL_LS0006	chr10:11463849|11484971:-	USP6NL	USP6 N-terminal like	protein coding gene	no	.	1.514	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
FHL1_LS016	chrX:136169733|136169907:+	FHL1	hemophagocytic lymphohistiocytosis 1	protein coding gene	yes	ENST00000394153.6;ENST00000456445.5	0.040	0.045	1.758	0.191(1831)	0.316(222)	0.587(10200)	non tumor-specific	alt_5prime;intron_retention	yes
UN_SEC22B4P_LS0016	chr1:146369584|146375921:+	SEC22B4P	SEC22 homolog B4, pseudogene	pseudogene	no	.	0.730	0.033	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FOXG1_UP_LS0001	chr14:28318532|28599717:+	FOXG1	forkhead box G1	protein coding gene	yes	.	1.527	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
TMED7-TICAM2_LS001	chr5:115581197|115616318:-	TMED7-TICAM2	TMED7-TICAM2 readthrough	protein coding gene	no	ENST00000282382.8	0.135	0.093	0.843	0.652(6247)	0.714(501)	0.306(5325)	non tumor-specific	alt_3prime	yes
UN_CRCT1_UP_LS0002	chr1:152481193|152511514:+	CRCT1	cysteine rich C-terminal 1	protein coding gene	no	.	1.911	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
EPS8_LS038	chr12:15684302|15789161:-	EPS8	epidermal growth factor receptor pathway substrate 8	protein coding gene	yes	ENST00000642278.1;ENST00000536793.5;ENST00000544064.1	0.116	0.070	0.670	0.049(471)	0.06(42)	0.145(2516)	non tumor-specific	exon_skip;mutex_exons	yes
FBXW8_LS004	chr12:116911355|116928023:+	FBXW8	F-box and WD repeat domain containing 8	protein coding gene	no	ENST00000309909.9	1.559	0.956	2.454	0.88(8428)	0.906(636)	0.861(14965)	non tumor-specific	alt_5prime;exon_skip	yes
GEMIN2_LS016	chr14:39132068|39136440:+	GEMIN2	gem nuclear organelle associated protein 2	protein coding gene	no	ENST00000396249.6	0.552	0.401	1.964	0.808(7744)	0.836(587)	0.794(13805)	non tumor-specific	exon_skip	yes
UN_MUC3A_LS0106	chr7:100958012|100958400:-	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	108.015	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BX322234.2_UP_LS0008	chr6:169295099|169295372:-	BX322234.2	-	lncRNA gene	no	.	1.317	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPL48P1_UP_LS0008	chr6:10470730|10470873:-	MRPL48P1	mitochondrial ribosomal protein L48 pseudogene 1	pseudogene	no	.	10.000	0.561	0.000	0.012(113)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_PRPF3_LS0028	chr1:150346501|150349157:+	PRPF3	pre-mRNA processing factor 3	protein coding gene	no	.	6.086	0.670	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_ABL1_LS0016	chr9:130798701|130800121:-	ABL1	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein coding gene	yes	.	2.565	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA0087_UP_LS0007	chr7:26598283|26598854:-	KIAA0087	KIAA0087 lncRNA	lncRNA gene	no	.	3.473	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
KCNK9_LS006	chr8:139612674|139618258:-	KCNK9	potassium two pore domain channel subfamily K member 9	protein coding gene	no	ENST00000522317.5;ENST00000523477.2;ENST00000303015.2	0.717	0.508	2.734	0.095(912)	0.014(10)	0.13(2252)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NPR2_LS0019	chr9:35808683|35808761:+	NPR2	NPR2 like, GATOR1 complex subunit	protein coding gene	no	.	5.128	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PRSS22_LS0008	chr16:2852876|2852993:+	PRSS22	serine protease 22	protein coding gene	no	.	1.561	0.393	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SHANK3_LS0077	chr22:50722437|50731103:+	SHANK3	SH3 and multiple ankyrin repeat domains 3	protein coding gene	no	.	2.258	0.470	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCCB_LS031	chr3:136317064|136326803:+	PCCB	propionyl-CoA carboxylase subunit beta	protein coding gene	no	ENST00000251654.8;ENST00000490504.5;ENST00000483687.5;ENST00000468777.5;ENST00000462637.5;ENST00000484181.5;ENST00000482086.5;ENST00000471595.5;ENST00000469217.5;ENST00000474833.5;ENST00000475214.5;ENST00000473073.1	115.662	84.425	35.918	0.998(9561)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_BCL7C_LS0005	chr16:30852322|30866317:-	BCL7C	BAF chromatin remodeling complex subunit BCL7C	protein coding gene	no	.	0.888	0.172	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SNX3_LS0013	chr6:108223024|108260760:-	SNX3	sorting nexin 3	protein coding gene	no	.	32.171	6.475	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ADCY4_LS044	chr14:24331937|24332522:-	ADCY4	adenylate cyclase 4	protein coding gene	no	ENST00000310677.8;ENST00000557056.5;ENST00000554068.6;ENST00000554781.5;ENST00000418030.6;ENST00000554674.1	1.197	2.235	12.188	0.719(6886)	0.86(604)	0.951(16534)	non tumor-specific	intron_retention	yes
UN_PDE7B_LS0006	chr6:135856294|135872338:-	PDE7B	phosphodiesterase 7B	protein coding gene	no	.	1.386	0.181	0.000	0.011(105)	0.007(5)	0(0)	non tumor-specific	nAS	no
TLN2_LS003	chr15:62561482|62589687:+	TLN2	talin 2	protein coding gene	no	ENST00000561311.5	0.405	0.506	0.866	0.301(2884)	0.464(326)	0.335(5821)	non tumor-specific	nAS	yes
UN_KIF7_LS0017	chr15:89628208|89629391:+	KIF7	kinesin family member 7	protein coding gene	yes	.	1.285	0.052	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ST8SIA1_LS0056	chr12:22392465|22436876:-	ST8SIA1	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein coding gene	no	.	1.388	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DLX6-AS1_LS007	chr7:96979587|97011825:-	DLX6-AS1	DLX6 antisense RNA 1	lncRNA gene	no	ENST00000437541.1	0.086	0.020	0.852	0.019(185)	0.006(4)	0.006(107)	non tumor-specific	nAS	yes
UN_IGHV3-30-2_UP_LS0004	chr14:106346386|106347929:-	IGHV3-30-2	immunoglobulin heavy variable 3-30-2 (pseudogene)	no	no	.	7.111	0.033	0.000	0.01(99)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AL139353.1_LS0020	chr14:31403049|31410491:-	AL139353.1	-	protein coding gene	no	.	1.484	0.577	0.000	0.113(1086)	0.134(94)	0(0)	non tumor-specific	nAS	no
UN_AL161798.1_UP_LS0019	chr10:91539578|91575198:-	AL161798.1	-	pseudogene	no	.	2.752	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NLRP5_UP_LS0001	chr19:55932737|55993085:+	NLRP5	NLR family pyrin domain containing 5	protein coding gene	no	.	0.781	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC023310.2_UP_LS0001	chr15:20639035|20639132:-	AC023310.2	-	pseudogene	no	.	1.476	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
CXCL17_LS004	chr19:42433077|42433776:-	CXCL17	C-X-C motif chemokine ligand 17	protein coding gene	no	ENST00000601181.5	89.126	145.482	1.824	0.592(5674)	0.63(442)	0.413(7186)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
COL6A2_LS010	chr21:46116677|46116770:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	ENST00000300527.8;ENST00000310645.9;ENST00000409416.5;ENST00000397763.5;ENST00000485591.1	500.541	366.543	451.191	0.991(9490)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CCDC141_LS008	chr2:178856397|178865767:-	CCDC141	coiled-coil domain containing 141	protein coding gene	no	ENST00000443758.6;ENST00000343876.6	2.857	0.652	1.058	0.054(520)	0.181(127)	0.324(5631)	non tumor-specific	alt_3prime	yes
C7orf50_LS023	chr7:997804|1000470:-	C7orf50	chromosome 7 open reading frame 50	protein coding gene	no	ENST00000357429.10;ENST00000397100.6;ENST00000397098.7;ENST00000412051.5;ENST00000488073.1;ENST00000444428.5;ENST00000491163.1	202.389	112.654	123.863	0.997(9550)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
DISP3_LS012	chr1:11524055|11525176:+	DISP3	dispatched RND transporter family member 3	protein coding gene	no	ENST00000294484.6	4.063	0.813	2.173	0.155(1482)	0.014(10)	0.281(4888)	non tumor-specific	nAS	yes
PASK_LS016	chr2:241122899|241123949:-	PASK	PAS domain containing serine/threonine kinase	protein coding gene	no	ENST00000234040.8;ENST00000544142.5;ENST00000405260.5;ENST00000358649.8;ENST00000403638.7;ENST00000493544.1	13.392	2.742	4.569	0.934(8946)	0.85(597)	0.918(15956)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NCMAP_LS0001	chr1:24556169|24556447:+	NCMAP	non-compact myelin associated protein	protein coding gene	no	.	2.961	1.865	0.000	0.272(2602)	0.459(322)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SSR2_LS025	chr1:156015073|156018270:-	SSR2	signal sequence receptor subunit 2	protein coding gene	no	ENST00000532074.5;ENST00000532074.5	7.151	7.818	2.101	0.965(9242)	0.966(678)	0.875(15212)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_XRCC4_LS0003	chr5:83078135|83104910:+	XRCC4	X-ray repair cross complementing 4	protein coding gene	no	.	1.392	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL049792.1_UP_LS0006	chrX:132154612|132162020:-	AL049792.1	-	pseudogene	no	.	2.624	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	nAS	no
ZSCAN5B_LS002	chr19:56190987|56191850:-	ZSCAN5B	zinc finger and SCAN domain containing 5B	protein coding gene	no	ENST00000586855.6;ENST00000358992.3	1.101	0.063	0.769	0.047(446)	0.033(23)	0.095(1658)	non tumor-specific	nAS	yes
ALDH5A1_LS010	chr6:24522925|24527997:+	ALDH5A1	aldehyde dehydrogenase 5 family member A1	protein coding gene	no	ENST00000357578.7;ENST00000491546.5;ENST00000348925.2;ENST00000479394.1	26.508	24.039	8.088	0.975(9340)	0.994(698)	0.957(16639)	non tumor-specific	alt_3prime;exon_skip	yes
RALYL_LS023	chr8:84873397|84887604:+	RALYL	RALY RNA binding protein like	protein coding gene	no	ENST00000522455.5;ENST00000521695.5;ENST00000521268.5;ENST00000518566.5;ENST00000517638.5;ENST00000523850.5	10.604	16.807	5.641	0.13(1245)	0.225(158)	0.39(6783)	non tumor-specific	alt_3prime;exon_skip	yes
CCZ1B_LS004	chr7:6796876|6798647:-	CCZ1B	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein coding gene	no	ENST00000472464.6	0.494	0.115	0.716	0.029(276)	0.02(14)	0.156(2708)	non tumor-specific	nAS	yes
UN_PDGFRB_LS0017	chr5:150114833|150115005:+	PDGFRB	platelet derived growth factor receptor beta	protein coding gene	yes	.	2.274	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
TCAF1P1_LS004	chr7:143601627|143602774:+	TCAF1P1	TRPM8 channel associated factor 1 pseudogene 1	pseudogene	no	ENST00000414990.3	22.746	16.540	0.620	0.861(8245)	0.953(669)	0.074(1278)	non tumor-specific	nAS	yes
C2orf83_LS001	chr2:227611656|227612940:-	C2orf83	chromosome 2 open reading frame 83	protein coding gene	no	ENST00000409066.1;ENST00000641422.1	3.253	0.000	0.727	0(1)	0(0)	0.01(173)	non tumor-specific	nAS	yes
NDC80_LS010	chr18:2585202|2587830:+	NDC80	NDC80 kinetochore complex component	protein coding gene	no	ENST00000261597.8	20.026	2.766	1.607	0.862(8260)	0.412(289)	0.412(7163)	non tumor-specific	nAS	yes
UN_EP400_LS0053	chr12:132052855|132053146:+	EP400	E1A binding protein p400	protein coding gene	no	.	1.396	0.532	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0440	chr14:104948802|104950783:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	2.089	1.468	0.000	0.034(323)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
COLEC11_LS015	chr2:3637604|3640278:+	COLEC11	collectin subfamily member 11	protein coding gene	no	ENST00000487365.5;ENST00000236693.11;ENST00000349077.8;ENST00000416132.5;ENST00000438814.5;ENST00000418971.6;ENST00000403096.7;ENST00000402794.4	11.150	21.836	5.013	0.681(6525)	0.832(584)	0.814(14150)	non tumor-specific	exon_skip	yes
SEPT4_LS018	chr17:58526313|58526682:-	SEPT4	septin 4	protein coding gene	yes	ENST00000393086.5;ENST00000583114.5;ENST00000426861.5;ENST00000317268.7;ENST00000577440.5;ENST00000457347.6;ENST00000317256.10;ENST00000412945.7;ENST00000584488.5;ENST00000583291.1;ENST00000393086.5;ENST00000583114.5;ENST00000426861.5;ENST00000317268.7;ENST00000577440.5;ENST00000457347.6;ENST00000317256.10;ENST00000412945.7;ENST00000584488.5;ENST00000583291.1	4.333	8.199	20.020	0.834(7989)	0.947(665)	0.958(16660)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_BRD4_LS0038	chr19:15242995|15243023:-	BRD4	bromodomain containing 4	protein coding gene	yes	.	11.951	0.531	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
CR383658.1_LS003	chr14:18340726|18341694:+	CR383658.1	-	pseudogene	no	ENST00000514609.6	2.950	0.000	0.598	0.005(44)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_UBXN6_LS0045	chr19:4446717|4446836:-	UBXN6	UBX domain protein 6	protein coding gene	no	.	21.644	3.503	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_IRX5_UP_LS0011	chr16:54287045|54298921:+	IRX5	iroquois homeobox 5	protein coding gene	no	.	3.300	0.162	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CTNS_LS0024	chr17:3647522|3647738:+	CTNS	cystinosin, lysosomal cystine transporter	protein coding gene	no	.	1.180	0.078	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PON1_LS003	chr7:95306366|95308011:-	PON1	paraoxonase 1	protein coding gene	no	ENST00000222381.7;ENST00000433729.1	31.524	103.221	1.443	0.172(1645)	0.195(137)	0.414(7202)	non tumor-specific	alt_5prime;exon_skip	yes
PTPN5_LS007	chr11:18733635|18737880:-	PTPN5	protein tyrosine phosphatase non-receptor type 5	protein coding gene	no	ENST00000477854.5;ENST00000358540.6;ENST00000396170.5;ENST00000396168.1	3.330	11.999	2.709	0.141(1353)	0.191(134)	0.682(11848)	non tumor-specific	nAS	yes
UN_AP001107.7_UP_LS0002	chr11:66268208|66268960:-	AP001107.7	-	lncRNA gene	no	.	0.704	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
MIR4435-2HG_LS028	chr2:111469987|111471989:-	MIR4435-2HG	MIR4435-2 host gene	lncRNA gene	no	ENST00000604981.5;ENST00000439494.1	0.143	0.035	0.719	0.078(746)	0.051(36)	0.08(1398)	non tumor-specific	nAS	yes
UN_AL390334.1_LS0026	chr14:27551648|27555439:+	AL390334.1	-	pseudogene	no	.	3.068	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC145285.4_LS0011	chr16:28738746|28740679:-	AC145285.4	-	pseudogene	no	.	1.679	0.536	0.000	0.013(123)	0.051(36)	0(0)	non tumor-specific	nAS	no
LINC02465_LS008	chr4:129908703|129949077:+	LINC02465	long intergenic non-protein coding RNA 2465	lncRNA gene	no	ENST00000513875.5	4.747	0.000	0.827	0(2)	0(0)	0.005(94)	non tumor-specific	nAS	yes
WARS_LS003	chr14:100342571|100343275:-	WARS	tryptophanyl-tRNA synthetase 1	protein coding gene	no	ENST00000392882.6;ENST00000358655.8;ENST00000355338.6;ENST00000344102.9;ENST00000557135.5;ENST00000556645.5;ENST00000554950.1;ENST00000554601.1	266.854	137.533	95.938	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ATN1_LS0276	chr12:6938805|6938905:-	ATN1	atrophin 1	protein coding gene	no	.	4.618	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RIBC2_LS0003	chr22:45417946|45418105:+	RIBC2	RIB43A domain with coiled-coils 2	protein coding gene	no	.	1.589	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LYSMD3_LS012	chr5:90527002|90529448:-	LYSMD3	LysM domain containing 3	protein coding gene	no	ENST00000500869.6	0.203	0.073	0.639	0.02(192)	0.043(30)	0.082(1430)	non tumor-specific	exon_skip	yes
USP54_LS020	chr10:73530523|73530704:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	ENST00000418501.5;ENST00000424265.5;ENST00000339859.8;ENST00000497106.5;ENST00000498143.5	3.895	3.558	18.887	0.771(7387)	0.877(616)	0.946(16440)	non tumor-specific	exon_skip	yes
CHST10_LS001	chr2:100393782|100395509:-	CHST10	carbohydrate sulfotransferase 10	protein coding gene	yes	ENST00000264249.7;ENST00000409701.5	19.733	10.380	5.876	0.863(8269)	0.893(627)	0.932(16204)	non tumor-specific	exon_skip	yes
EFR3A_LS024	chr8:131996497|132000769:+	EFR3A	EFR3 homolog A	protein coding gene	no	ENST00000519920.1;ENST00000523074.5	0.336	0.146	1.679	0.468(4487)	0.51(358)	0.635(11029)	non tumor-specific	alt_3prime;exon_skip	yes
CD27-AS1_LS001	chr12:6439676|6443546:-	CD27-AS1	CD27 antisense RNA 1	lncRNA gene	no	ENST00000535639.5;ENST00000545339.5;ENST00000417058.6;ENST00000399492.6	11.958	8.070	24.837	0.968(9273)	0.986(692)	0.977(16982)	non tumor-specific	nAS	yes
UN_HNRNPA1P49_UP_LS0004	chr6:166308075|166309722:+	HNRNPA1P49	heterogeneous nuclear ribonucleoprotein A1 pseudogene 49	pseudogene	no	.	0.738	0.155	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZYX_LS0051	chr7:143382932|143382987:+	ZYX	zyxin	protein coding gene	yes	.	42.609	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC006483.2_UP_LS0027	chr7:5499228|5528289:+	AC006483.2	-	lncRNA gene	no	.	5.214	0.144	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC110921.1_LS001	chr17:67524742|67525073:+	AC110921.1	-	lncRNA gene	no	ENST00000577544.1	0.404	0.037	0.742	0.029(274)	0.009(6)	0.041(710)	non tumor-specific	nAS	yes
ADAT1_LS009	chr16:75617272|75618586:-	ADAT1	adenosine deaminase tRNA specific 1	protein coding gene	no	ENST00000566445.5;ENST00000307921.7;ENST00000567281.5;ENST00000565109.5;ENST00000564657.1	12.459	8.463	6.192	0.928(8888)	0.957(672)	0.961(16697)	non tumor-specific	alt_3prime;exon_skip	yes
UN_S100A9_LS0026	chr1:153360753|153360845:-	S100A9	S100 calcium binding protein A9	protein coding gene	no	.	46.115	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZFP41_LS005	chr8:143251340|143252888:+	ZFP41	ZFP41 zinc finger protein	protein coding gene	no	ENST00000520584.5	1.098	0.630	0.799	0.601(5756)	0.573(402)	0.374(6505)	non tumor-specific	intron_retention	yes
MYH8_LS021	chr17:10406397|10406690:-	MYH8	myosin heavy chain 8	protein coding gene	no	ENST00000403437.2	12.503	0.426	2.251	0.018(173)	0.021(15)	0.048(833)	non tumor-specific	nAS	yes
LSS_LS015	chr21:46206768|46207428:-	LSS	lanosterol synthase	protein coding gene	no	ENST00000356396.8;ENST00000397728.7;ENST00000457828.6;ENST00000522411.5	34.952	32.460	52.258	0.975(9342)	0.996(699)	0.979(17011)	non tumor-specific	nAS	yes
RASGEF1C_LS005	chr5:180114541|180115368:-	RASGEF1C	RasGEF domain family member 1C	protein coding gene	no	ENST00000519456.1	0.203	0.000	0.638	0(4)	0(0)	0.002(40)	non tumor-specific	nAS	yes
ADAMTS17_LS008	chr15:100117013|100132007:-	ADAMTS17	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein coding gene	no	ENST00000268070.8;ENST00000378898.8	2.211	1.036	1.248	0.115(1099)	0.115(81)	0.579(10056)	non tumor-specific	nAS	yes
UN_SMAD2_LS0016	chr18:47848980|47851274:-	SMAD2	SMAD family member 2	protein coding gene	yes	.	15.135	5.281	0.000	0.006(59)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_SNRPGP2_UP_LS0025	chr18:54607014|54607307:-	SNRPGP2	small nuclear ribonucleoprotein polypeptide G pseudogene 2	pseudogene	no	.	0.820	0.177	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
DZIP1L_LS021	chr3:138104052|138115328:-	DZIP1L	DAZ interacting zinc finger protein 1 like	protein coding gene	no	ENST00000327532.6	0.279	0.203	1.485	0.377(3614)	0.51(358)	0.628(10911)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF704_LS0009	chr8:80640410|80640526:-	ZNF704	zinc finger protein 704	protein coding gene	no	.	2.105	0.498	0.000	0.016(150)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_TRIM38_LS0028	chr6:25973285|25981798:+	TRIM38	tripartite motif containing 38	protein coding gene	no	.	3.631	0.271	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
MOBP_LS013	chr3:39502876|39513383:+	MOBP	myelin associated oligodendrocyte basic protein	protein coding gene	no	ENST00000311042.10;ENST00000442631.5	0.271	0.032	16.827	0.053(509)	0.009(6)	0.187(3246)	non tumor-specific	alt_5prime;exon_skip	yes
FAM83H_LS005	chr8:143730597|143731333:-	FAM83H	family with sequence similarity 83 member H	protein coding gene	no	.;.	3.735	1.443	0.000	0.138(1322)	0.238(167)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CSF2RA_LS019	chrX:1294461|1295427:+	CSF2RA	colony stimulating factor 2 receptor subunit alpha	protein coding gene	no	ENST00000381529.8;ENST00000501036.7;ENST00000417535.7;ENST00000381524.8;ENST00000493312.6;ENST00000432318.8;ENST00000381509.8;ENST00000486791.6;ENST00000355432.8;ENST00000381500.6;ENST00000475259.6;ENST00000491683.6;ENST00000498153.6	14.824	7.246	5.247	0.941(9012)	0.963(676)	0.879(15271)	non tumor-specific	intron_retention	yes
MYSM1_LS012	chr1:58669038|58673573:-	MYSM1	Myb like, SWIRM and MPN domains 1	protein coding gene	no	.;.;.	1.771	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CAMK2G_LS001	chr10:73814505|73815003:-	CAMK2G	calcium/calmodulin dependent protein kinase II gamma	protein coding gene	no	ENST00000351293.7;ENST00000322635.7;ENST00000394762.6;ENST00000322680.7;ENST00000423381.5;ENST00000433289.5;ENST00000305762.11;ENST00000372765.5;ENST00000441192.1;ENST00000472912.5	14.402	17.022	29.412	0.988(9462)	0.986(692)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SRGAP2_LS045	chr1:206458947|206461037:+	SRGAP2	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	no	ENST00000624873.3;ENST00000573034.7;ENST00000604010.1	13.591	6.391	10.665	0.93(8910)	0.913(641)	0.971(16872)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TLN1_LS0012	chr9:35697504|35697527:+	TLN1	talin 1	protein coding gene	no	.	6.644	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RUNX1_LS0158	chr21:35965376|35970075:-	RUNX1	RUNX family transcription factor 1	protein coding gene	yes	.	5.890	1.098	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	nAS	no
STARD9_LS033	chr15:42695880|42716677:+	STARD9	StAR related lipid transfer domain containing 9	protein coding gene	no	ENST00000290607.11;ENST00000562619.1	5.462	4.522	18.105	0.422(4047)	0.577(405)	0.963(16745)	non tumor-specific	exon_skip	yes
PARP1_LS021	chr1:226386442|226388656:-	PARP1	poly(ADP-ribose) polymerase 1	protein coding gene	yes	ENST00000366794.9	159.640	73.094	65.484	0.993(9511)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_PAPPA-AS1_UP_LS0004	chr9:116420559|116425876:-	PAPPA-AS1	PAPPA antisense RNA 1	lncRNA gene	no	.	2.914	0.171	0.000	0.006(53)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_RNMT_LS0004	chr18:13727139|13730627:+	RNMT	RNA guanine-7 methyltransferase	protein coding gene	no	.	1.259	0.077	0.000	0.015(144)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_NT5DC1_UP_LS0001	chr6:116041516|116061899:+	NT5DC1	5'-nucleotidase domain containing 1	protein coding gene	no	.	2.691	0.917	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
DNAH14_LS053	chr1:225168028|225185291:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000445597.6;ENST00000430092.5;ENST00000439375.6	2.804	0.344	1.252	0.034(327)	0.009(6)	0.445(7741)	non tumor-specific	exon_skip	yes
SSC5D_LS003	chr19:55489032|55489882:+	SSC5D	scavenger receptor cysteine rich family member with 5 domains	protein coding gene	no	.;.	0.216	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC008074.1_UP_LS0003	chr2:64340235|64344552:+	AC008074.1	-	pseudogene	no	.	2.957	1.065	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SHISA6_LS0016	chr17:11268939|11274805:+	SHISA6	shisa family member 6	protein coding gene	no	.	2.940	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	exon_skip	no
CLTRN_LS003	chrX:15645029|15659016:-	CLTRN	collectrin, amino acid transport regulator	protein coding gene	no	ENST00000380342.3;ENST00000650271.1	45.538	60.410	1.720	0.653(6256)	0.813(571)	0.699(12143)	non tumor-specific	nAS	yes
ZNF267_LS006	chr16:31884624|31885161:+	ZNF267	zinc finger protein 267	protein coding gene	no	ENST00000300870.14;ENST00000394846.7;ENST00000566541.5;ENST00000561814.1;ENST00000562971.1	18.574	8.290	6.935	0.985(9438)	0.984(691)	0.967(16814)	non tumor-specific	exon_skip	yes
UN_CHD9_LS0102	chr16:53303623|53303720:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	1.950	0.266	0.000	0.007(63)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_SYNGR2_LS0081	chr17:78171839|78171923:-	SYNGR2	synaptogyrin 2	protein coding gene	no	.	11.452	0.391	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
HERC2P3_LS017	chr15:20452588|20453351:-	HERC2P3	hect domain and RLD 2 pseudogene 3	pseudogene	no	ENST00000437318.5;ENST00000440441.5;ENST00000440774.1	0.613	0.293	4.457	0.478(4577)	0.496(348)	0.692(12027)	non tumor-specific	nAS	yes
UN_GIGYF1_LS0050	chr7:100683230|100683300:-	GIGYF1	GRB10 interacting GYF protein 1	protein coding gene	no	.	3.879	0.197	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_AC004908.1_UP_LS0001	chr8:261496|265423:-	AC004908.1	-	lncRNA gene	no	.	3.024	1.311	0.000	0.019(178)	0.06(42)	0(0)	non tumor-specific	nAS	no
LINC02500_LS001	chr4:181261568|181264945:-	LINC02500	long intergenic non-protein coding RNA 2500	lncRNA gene	no	ENST00000512547.1	1.347	0.095	0.886	0.004(43)	0.004(3)	0.027(464)	non tumor-specific	nAS	yes
RCAN2_LS002	chr6:46246919|46248723:-	RCAN2	regulator of calcineurin 2	protein coding gene	no	ENST00000330430.10;ENST00000371374.5;ENST00000306764.11;ENST00000405162.2	26.864	40.359	37.333	0.906(8683)	0.991(696)	0.95(16509)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZYG11A_LS003	chr1:52854630|52860731:+	ZYG11A	zyg-11 family member A, cell cycle regulator	protein coding gene	no	ENST00000612017.4;ENST00000371532.5	0.803	0.175	0.700	0.131(1254)	0.134(94)	0.043(746)	non tumor-specific	exon_skip	yes
UN_UBC_LS0008	chr12:124911750|124912663:+	UBC	ubiquitin C	protein coding gene	no	.	48.002	8.740	0.000	0.044(423)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_AC003009.1_UP_LS0016	chr16:13673833|13702601:-	AC003009.1	-	lncRNA gene	no	.	3.747	0.722	0.000	0.008(79)	0.013(9)	0(0)	non tumor-specific	nAS	no
CCDC57_LS007	chr17:82101866|82113602:-	CCDC57	coiled-coil domain containing 57	protein coding gene	no	.;.	2.198	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PTCD1_LS002	chr7:99423957|99424795:-	PTCD1	pentatricopeptide repeat domain 1	protein coding gene	no	ENST00000292478.8	28.412	12.387	17.008	0.991(9499)	0.997(700)	0.978(16998)	non tumor-specific	nAS	yes
UN_EPOR_UP_LS0001	chr19:11392314|11450557:-	EPOR	erythropoietin receptor	protein coding gene	no	.	1.723	0.599	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
TTLL5_LS060	chr14:75941494|75954424:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000554487.1	0.131	0.051	0.665	0.43(4120)	0.332(233)	0.123(2138)	non tumor-specific	nAS	yes
MDFI_LS013	chr6:41638825|41639777:+	MDFI	MyoD family inhibitor	protein coding gene	no	.;.	2.843	0.607	0.000	0.04(380)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF232_LS0008	chr17:5109052|5109478:-	ZNF232	zinc finger protein 232	protein coding gene	no	.	2.262	0.489	0.000	0.012(117)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
PKIG_LS007	chr20:44582731|44585100:+	PKIG	cAMP-dependent protein kinase inhibitor gamma	protein coding gene	no	ENST00000372891.7	0.624	0.566	3.021	0.638(6112)	0.789(554)	0.816(14189)	non tumor-specific	exon_skip	yes
UN_DAB2IP_LS0028	chr9:121699458|121758898:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	.	1.631	0.079	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
STPG1_LS001	chr1:24358619|24360851:-	STPG1	sperm tail PG-rich repeat containing 1	protein coding gene	no	ENST00000374409.5;ENST00000337248.8;ENST00000003583.12;ENST00000468303.5	12.339	9.110	7.421	0.909(8707)	0.929(652)	0.957(16629)	non tumor-specific	exon_skip	yes
ABCA13_LS052	chr7:48483163|48489236:+	ABCA13	ATP binding cassette subfamily A member 13	protein coding gene	no	ENST00000435803.5;ENST00000611776.4;ENST00000544596.5;ENST00000453246.5;ENST00000411975.5	4.517	1.304	1.309	0.183(1755)	0.226(159)	0.216(3761)	non tumor-specific	alt_3prime;exon_skip	yes
PNPLA1_LS004	chr6:36293126|36294163:+	PNPLA1	patatin like phospholipase domain containing 1	protein coding gene	no	ENST00000312917.9	0.697	0.041	0.730	0.003(29)	0.031(22)	0.037(649)	non tumor-specific	alt_3prime	yes
TMPRSS3_LS019	chr21:42395468|42395914:-	TMPRSS3	transmembrane serine protease 4	protein coding gene	no	.;.	2.091	1.356	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ZUP1_LS0014	chr6:116667207|116668760:-	ZUP1	zinc finger containing ubiquitin peptidase 1	protein coding gene	no	.	1.877	0.084	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_RF00019_UP_LS0692	chr16:173271|176789:+	RF00019	-	small non-coding RNA gene	no	.	128.559	163.212	0.000	0.002(21)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SMARCAL1_LS0005	chr2:216414090|216414647:+	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein coding gene	no	.	1.599	0.162	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
FOXP1_LS012	chr3:70977719|70977828:-	FOXP1	forkhead box P1	protein coding gene	yes	ENST00000493089.7;ENST00000649596.1;ENST00000649431.1;ENST00000649610.1;ENST00000647741.1;ENST00000648748.1;ENST00000648718.1;ENST00000650188.1;ENST00000644199.1;ENST00000614183.1;ENST00000647829.1	11.298	10.179	7.930	0.822(7871)	0.932(654)	0.955(16606)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MYRF_LS0002	chr11:61752790|61753208:+	MYRF	myelin regulatory factor	protein coding gene	no	.	0.768	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FER1L6_LS039	chr8:124097883|124101097:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	4.997	5.721	1.177	0.134(1283)	0.366(257)	0.144(2510)	non tumor-specific	alt_3prime	yes
ZNF148_LS001	chr3:125232654|125233109:-	ZNF148	zinc finger protein 148	protein coding gene	no	ENST00000496732.1	0.404	0.149	0.656	0.356(3410)	0.376(264)	0.156(2710)	non tumor-specific	intron_retention	yes
NOP2_LS020	chr12:6566617|6566777:-	NOP2	NOP2 nucleolar protein	protein coding gene	no	ENST00000537442.5;ENST00000620535.4;ENST00000382421.7;ENST00000545200.5;ENST00000399466.6;ENST00000322166.9;ENST00000541778.5;ENST00000617555.4;ENST00000542867.5;ENST00000536124.5;ENST00000545492.5;ENST00000545915.5;ENST00000540228.1;ENST00000538697.1	15.896	7.197	21.957	0.99(9481)	0.994(698)	0.978(17007)	non tumor-specific	nAS	yes
VAV2_LS026	chr9:133807326|133809040:-	VAV2	vav guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000406606.7;ENST00000371850.7;ENST00000371851.1	33.767	21.806	10.403	0.954(9143)	0.986(692)	0.959(16678)	non tumor-specific	exon_skip	yes
UN_AC018462.1_UP_LS0003	chr2:62194907|62195139:-	AC018462.1	-	lncRNA gene	no	.	1.765	0.333	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
TOPBP1_LS007	chr3:133611141|133612389:-	TOPBP1	DNA topoisomerase II binding protein 1	protein coding gene	no	ENST00000642236.1;ENST00000260810.9	66.880	20.040	25.289	0.991(9494)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MICA_UP_LS0008	chr6:31354247|31381926:+	MICA	MHC class I polypeptide-related sequence A	protein coding gene	no	.	17.847	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MKRN2OS_LS003	chr3:12542003|12545247:-	MKRN2OS	MKRN2 opposite strand	protein coding gene	no	.;.	2.195	0.499	0.000	0.052(501)	0.023(16)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DUOX1_LS043	chr15:45152516|45153380:+	DUOX1	dual oxidase 1	protein coding gene	no	ENST00000321429.8;ENST00000389037.7;ENST00000561220.6;ENST00000561166.1;ENST00000559716.6;ENST00000559221.1	15.518	28.086	3.333	0.566(5422)	0.671(471)	0.657(11426)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC17A4_LS001	chr6:25754781|25760297:+	SLC17A4	solute carrier family 17 member 4	protein coding gene	no	.;.	1.204	0.626	0.000	0.012(114)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC092164.1_UP_LS0021	chr2:28750385|28751296:-	AC092164.1	-	lncRNA gene	no	.	1.763	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SERPINF1_LS004	chr17:1762113|1766910:+	SERPINF1	serpin family F member 1	protein coding gene	no	.;.	5.314	3.776	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TEX49_LS004	chr12:48759331|48764851:+	TEX49	testis expressed 49	protein coding gene	no	ENST00000548380.5;ENST00000548054.2	7.344	0.462	0.921	0.011(102)	0.013(9)	0.037(643)	non tumor-specific	nAS	yes
UN_FP236383.1_UP_LS0213	chr21:8215431|8259660:+	FP236383.1	-	lncRNA gene	no	.	292.123	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ITPR2_LS005	chr12:26400258|26411320:-	ITPR2	inositol 1,4,5-trisphosphate receptor type 2	protein coding gene	no	ENST00000381340.7;ENST00000451599.6	26.056	21.273	8.051	0.95(9101)	0.991(696)	0.968(16826)	non tumor-specific	exon_skip	yes
UN_PAICS_LS0012	chr4:56453761|56456113:+	PAICS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein coding gene	no	.	8.169	0.411	0.000	0.022(211)	0.013(9)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CASP10_LS002	chr2:201186124|201187706:+	CASP10	caspase 10	protein coding gene	no	ENST00000286186.10;ENST00000360132.7;ENST00000460140.5;ENST00000272879.9;ENST00000374650.7;ENST00000346817.9;ENST00000313728.11;ENST00000448480.1;ENST00000492363.5	6.469	6.677	4.021	0.844(8082)	0.953(669)	0.902(15674)	non tumor-specific	exon_skip	yes
GTF2B_LS004	chr1:88857487|88859882:-	GTF2B	general transcription factor IIB	protein coding gene	no	ENST00000370500.9;ENST00000448623.5;ENST00000418217.1	77.371	51.306	32.635	0.997(9548)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PVT1_LS006	chr8:127796008|127890589:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	ENST00000517790.1	0.273	0.088	0.997	0.633(6066)	0.356(250)	0.33(5737)	non tumor-specific	nAS	yes
UN_CADPS2_LS0023	chr7:122513315|122530132:-	CADPS2	calcium dependent secretion activator 2	protein coding gene	no	.	2.064	0.002	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_KALRN_LS0030	chr3:124285142|124296292:-	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	2.468	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AFG3L1P_LS018	chr16:89985570|89988682:+	AFG3L1P	AFG3 like matrix AAA peptidase subunit 1, pseudogene	pseudogene	no	ENST00000557444.5	2.057	0.432	0.705	0.02(188)	0.019(13)	0.022(390)	non tumor-specific	nAS	yes
S100PBP_LS001	chr1:32816982|32825313:+	S100PBP	S100P binding protein	protein coding gene	no	ENST00000530710.5	0.070	0.050	0.698	0.532(5095)	0.46(323)	0.132(2292)	non tumor-specific	alt_3prime	yes
AC145343.1_LS003	chr17:68100708|68101415:-	AC145343.1	-	lncRNA gene	no	ENST00000579629.1	0.661	0.258	0.750	0.374(3582)	0.291(204)	0.242(4201)	non tumor-specific	nAS	yes
UN_TLE1_LS0016	chr9:81593274|81593888:-	TLE1	TLE family member 1, transcriptional corepressor	protein coding gene	yes	.	2.556	0.389	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
VPS26C_LS015	chr21:37232451|37238460:-	VPS26C	VPS26 endosomal protein sorting factor C	protein coding gene	no	ENST00000476950.5;ENST00000476950.5	0.452	0.752	2.966	0.855(8187)	0.933(655)	0.902(15685)	non tumor-specific	alt_3prime;exon_skip	yes
VMP1_LS025	chr17:59834050|59838295:+	VMP1	vacuole membrane protein 1	protein coding gene	no	ENST00000591877.1	5.178	3.712	2.773	0.87(8333)	0.922(647)	0.905(15732)	non tumor-specific	exon_skip	yes
UN_ADAM8_LS0009	chr10:133263765|133265672:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	.	3.146	0.827	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_ANAPC16_LS0005	chr10:72216138|72220048:-	ANAPC16	anaphase promoting complex subunit 16	protein coding gene	no	.	0.190	0.355	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
RARS2_LS016	chr6:87530942|87541918:-	RARS2	arginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000369536.9	50.573	34.455	32.079	0.993(9513)	0.997(700)	0.979(17009)	non tumor-specific	exon_skip;mutex_exons	yes
ARPC1A_LS023	chr7:99363633|99365912:+	ARPC1A	actin related protein 2/3 complex subunit 1A	protein coding gene	no	.;.	11.556	1.019	0.000	0.02(193)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
IGF2R_LS005	chr6:160024704|160027185:+	IGF2R	insulin like growth factor 2 receptor	protein coding gene	yes	ENST00000356956.5;ENST00000647592.1	18.583	16.044	7.999	0.866(8295)	0.959(673)	0.946(16438)	non tumor-specific	nAS	yes
UN_YAP1_LS0031	chr11:102174890|102186018:+	YAP1	Yes1 associated transcriptional regulator	protein coding gene	yes	.	3.247	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SINHCAF_LS0013	chr12:31298224|31302941:-	SINHCAF	SIN3-HDAC complex associated factor	protein coding gene	no	.	1.139	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TBC1D7_LS016	chr6:13316708|13318098:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	ENST00000607208.1	0.037	0.071	0.892	0.382(3663)	0.316(222)	0.348(6043)	non tumor-specific	alt_3prime;exon_skip	yes
MS4A3_LS001	chr11:60056740|60061146:+	MS4A3	membrane spanning 4-domains A3	protein coding gene	no	ENST00000528298.5;ENST00000358152.6;ENST00000278865.7;ENST00000525686.1	2.186	0.260	1.657	0.017(166)	0.016(11)	0.095(1649)	non tumor-specific	exon_skip	yes
LINC01778_LS009	chr1:30826194|30826605:+	LINC01778	long intergenic non-protein coding RNA 1778	lncRNA gene	no	ENST00000634319.1	2.229	0.163	0.726	0.002(20)	0.004(3)	0.068(1182)	non tumor-specific	nAS	yes
UN_AC093599.1_LS0007	chr4:153058812|153064810:-	AC093599.1	-	lncRNA gene	no	.	1.286	1.601	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
PLAC9_LS001	chr10:80131831|80142082:+	PLAC9	placenta associated 9	protein coding gene	no	ENST00000372270.6	0.002	0.023	0.828	0.217(2081)	0.516(362)	0.122(2126)	non tumor-specific	nAS	yes
UN_PRDX6_LS0023	chr1:173487858|173487962:-	PRDX6	peroxiredoxin 6	protein coding gene	no	.	4.283	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DIS3_LS018	chr13:72775375|72775925:-	DIS3	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein coding gene	yes	ENST00000377767.8;ENST00000377780.8;ENST00000545453.5;ENST00000490646.1	28.415	19.221	16.284	0.952(9125)	0.983(690)	0.973(16914)	non tumor-specific	alt_3prime	yes
STAT3_LS032	chr17:42346713|42348389:-	STAT3	signal transducer and activator of transcription 3	protein coding gene	yes	ENST00000264657.9;ENST00000585517.5;ENST00000588969.5;ENST00000404395.3;ENST00000585360.1;ENST00000588065.1	74.592	62.681	73.906	0.985(9437)	0.994(698)	0.979(17020)	non tumor-specific	exon_skip;intron_retention	yes
HEXA_LS025	chr15:72353178|72353691:-	HEXA	hexosaminidase subunit alpha	protein coding gene	no	ENST00000268097.9;ENST00000566304.5;ENST00000567027.5;ENST00000568777.5;ENST00000567159.5;ENST00000569410.5	170.708	105.668	71.233	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
WDR78_LS006	chr1:66833706|66833991:-	WDR78	dynein axonemal intermediate chain 4	protein coding gene	no	ENST00000371026.7;ENST00000491297.6;ENST00000464352.6	3.061	3.400	2.121	0.491(4701)	0.719(505)	0.738(12835)	non tumor-specific	nAS	yes
ZNF208_LS010	chr19:21988909|22010792:-	ZNF208	zinc finger protein 208	protein coding gene	no	ENST00000599916.5;ENST00000601773.5;ENST00000609966.5;ENST00000397126.8	0.757	0.390	3.535	0.431(4131)	0.701(492)	0.795(13827)	non tumor-specific	exon_skip	yes
UN_TMTC1_LS0022	chr12:29650846|29659880:-	TMTC1	transmembrane O-mannosyltransferase targeting cadherins 1	protein coding gene	no	.	2.108	0.123	0.000	0.004(39)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
LINC02263_LS002	chr4:117361506|117371592:+	LINC02263	long intergenic non-protein coding RNA 2263	lncRNA gene	no	ENST00000420701.5;ENST00000426240.5;ENST00000448804.5;ENST00000419264.1	1.061	0.005	0.799	0.025(238)	0.001(1)	0.007(125)	non tumor-specific	nAS	yes
MYO9B_LS020	chr19:17183868|17184865:+	MYO9B	myosin IXB	protein coding gene	no	ENST00000595618.5;ENST00000594824.5;ENST00000397274.6;ENST00000595641.5;ENST00000594971.5;ENST00000602177.1;ENST00000601749.1;ENST00000598464.1	23.982	12.566	26.528	0.974(9334)	0.984(691)	0.978(16999)	non tumor-specific	exon_skip;intron_retention	yes
SPAG4_LS017	chr20:35617840|35619195:+	SPAG4	sperm associated antigen 4	protein coding gene	no	.;.	4.274	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_RF00019_UP_LS0517	chr16:14951993|15363659:-	RF00019	-	small non-coding RNA gene	no	.	7.584	0.513	0.000	0.011(104)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HOOK2_LS0169	chr19:12792416|12792479:-	HOOK2	hook microtubule tethering protein 2	protein coding gene	no	.	9.107	1.649	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_GNAS_LS0132	chr20:58903771|58905433:-	GNAS	GNAS complex locus	protein coding gene	yes	.	139.034	27.816	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	nAS	no
SCRG1_LS014	chr4:173404432|173406260:-	SCRG1	stimulator of chondrogenesis 1	protein coding gene	no	ENST00000512188.1	0.548	0.000	0.586	0(2)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_AL109809.1_LS0008	chr20:1777604|1778520:-	AL109809.1	-	pseudogene	no	.	1.124	0.159	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
HECTD1_LS005	chr14:31105476|31105590:-	HECTD1	HECT domain E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000554882.5;ENST00000555843.5;ENST00000611816.4;ENST00000399332.5;ENST00000553700.5	104.509	70.878	115.883	0.992(9508)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
ALMS1_LS031	chr2:73603304|73608475:+	ALMS1	ALMS1 centrosome and basal body associated protein	protein coding gene	no	ENST00000484298.5;ENST00000613296.4;ENST00000490821.1;ENST00000484298.5;ENST00000613296.4;ENST00000490821.1;ENST00000484298.5;ENST00000613296.4;ENST00000490821.1	31.098	14.024	17.551	0.966(9253)	0.956(671)	0.975(16952)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC3A2_LS003	chr11:62856381|62881019:+	SLC3A2	solute carrier family 3 member 2	protein coding gene	yes	ENST00000377889.6	2.832	0.707	1.260	0.023(223)	0.084(59)	0.47(8161)	non tumor-specific	exon_skip	yes
UN_CHGA_LS0061	chr14:92932728|92935002:-	CHGA	chromogranin A	protein coding gene	no	.	6.438	1.897	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
MRPL22_LS002	chr5:154941265|154950803:+	MRPL22	mitochondrial ribosomal protein L22	protein coding gene	no	ENST00000522038.5	0.792	0.874	0.796	0.704(6742)	0.679(477)	0.386(6714)	non tumor-specific	alt_3prime;exon_skip	yes
COX7C_LS004	chr5:86618130|86619353:+	COX7C	cytochrome c oxidase subunit 7C	protein coding gene	no	ENST00000247655.3;ENST00000509578.1;ENST00000515763.1	2011.375	1179.327	1241.878	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MVB12B_LS0005	chr9:126327296|126340508:+	MVB12B	multivesicular body subunit 12B	protein coding gene	no	.	1.479	0.362	0.000	0.013(128)	0.026(18)	0(0)	non tumor-specific	nAS	no
RASGRP4_LS011	chr19:38413474|38419860:-	RASGRP4	RAS guanyl releasing protein 4	protein coding gene	no	ENST00000622174.4;ENST00000426920.6	0.042	0.014	0.683	0.07(673)	0.091(64)	0.007(126)	non tumor-specific	nAS	yes
P2RX5-TAX1BP3_LS009	chr17:3689630|3690070:-	P2RX5-TAX1BP3	P2RX5-TAX1BP3 readthrough (NMD candidate)	protein coding gene	no	ENST00000550383.1	5.159	2.348	3.450	0.465(4451)	0.301(211)	0.667(11592)	non tumor-specific	alt_3prime	yes
FCGR1A_LS002	chr1:149782774|149788366:+	FCGR1A	Fc fragment of IgG receptor Ia	protein coding gene	no	ENST00000444948.5	0.118	0.103	1.155	0.523(5009)	0.413(290)	0.208(3622)	non tumor-specific	exon_skip	yes
UN_RN7SL211P_UP_LS0010	chr2:64955984|65047954:-	RN7SL211P	RNA, 7SL, cytoplasmic 211, pseudogene	small non-coding RNA gene	no	.	1.704	0.278	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
FGGY_LS005	chr1:59297150|59315592:+	FGGY	FGGY carbohydrate kinase domain containing	protein coding gene	no	ENST00000583635.1;ENST00000634364.1	0.216	0.102	0.699	0.152(1459)	0.228(160)	0.205(3562)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ELN_LS032	chr7:74046767|74047675:+	ELN	small integral membrane protein 6	protein coding gene	no	ENST00000445912.5;ENST00000621115.4;ENST00000252034.11;ENST00000358929.8;ENST00000438906.5;ENST00000414324.5;ENST00000380562.8;ENST00000380575.8;ENST00000458204.5;ENST00000357036.9;ENST00000417091.5;ENST00000429192.5;ENST00000380576.9;ENST00000428787.5;ENST00000320399.10;ENST00000477397.1;ENST00000493839.1	15.382	14.234	58.890	0.907(8690)	0.993(697)	0.955(16598)	non tumor-specific	exon_skip	yes
ASCC3_LS031	chr6:100718251|100725539:-	ASCC3	activating signal cointegrator 1 complex subunit 3	protein coding gene	no	ENST00000369162.6;ENST00000324696.8;ENST00000522650.5	10.678	5.904	4.564	0.828(7934)	0.919(645)	0.902(15683)	non tumor-specific	exon_skip	yes
UN_C11orf65_LS0047	chr11:108365502|108367558:+	C11orf65	chromosome 11 open reading frame 65	protein coding gene	no	.	2.000	0.305	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC012594.1_LS017	chr2:170383921|170385838:-	AC012594.1	-	lncRNA gene	no	ENST00000625968.2	1.745	0.000	0.601	0(1)	0(0)	0.001(10)	non tumor-specific	nAS	yes
MIR99AHG_LS012	chr21:16420572|16487490:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	ENST00000602620.1	0.142	0.033	0.931	0.223(2136)	0.348(244)	0.371(6451)	non tumor-specific	nAS	yes
CLNS1A_LS011	chr11:77619695|77624963:-	CLNS1A	chloride nucleotide-sensitive channel 1A	protein coding gene	no	ENST00000525064.5	2.292	1.462	1.997	0.98(9386)	0.981(689)	0.855(14855)	non tumor-specific	exon_skip	yes
LINC01724_LS001	chr1:196045539|196060997:-	LINC01724	long intergenic non-protein coding RNA 1724	lncRNA gene	no	ENST00000430519.1	0.174	0.051	0.661	0.047(447)	0.046(32)	0.008(132)	non tumor-specific	nAS	yes
LINC01929_LS001	chr18:55108653|55116954:-	LINC01929	long intergenic non-protein coding RNA 1929	lncRNA gene	no	ENST00000589125.5;ENST00000592405.1	0.676	0.087	0.754	0.217(2076)	0.081(57)	0.102(1781)	non tumor-specific	nAS	yes
UN_NEUROD2_UP_LS0003	chr17:39622205|39628361:-	NEUROD2	neuronal differentiation 2	protein coding gene	no	.	4.114	1.334	0.000	0.071(684)	0.08(56)	0(0)	non tumor-specific	nAS	no
ZNF496_LS019	chr1:247330081|247331432:-	ZNF496	zinc finger protein 496	protein coding gene	no	ENST00000294753.8;ENST00000478225.5;ENST00000477903.1	10.556	5.707	9.640	0.95(9106)	0.983(690)	0.97(16864)	non tumor-specific	alt_3prime	yes
COL7A1_LS036	chr3:48572421|48572503:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000487017.5;ENST00000328333.12	17.368	3.929	12.767	0.651(6236)	0.427(300)	0.957(16638)	non tumor-specific	alt_5prime;exon_skip	yes
MEG3_LS016	chr14:100831534|100832512:+	MEG3	maternally expressed 3	lncRNA gene	yes	ENST00000649261.1;ENST00000423456.6;ENST00000648820.1;ENST00000556736.5;ENST00000398518.6;ENST00000398474.7;ENST00000648950.1;ENST00000649174.1;ENST00000650556.1	2.433	0.160	3.326	0.226(2165)	0.219(154)	0.787(13673)	non tumor-specific	nAS	yes
UN_ABHD18_LS0051	chr4:128036512|128038673:-	ABHD18	abhydrolase domain containing 18	protein coding gene	no	.	1.501	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CLEC18B_LS025	chr16:74421376|74421619:-	CLEC18B	C-type lectin domain family 18 member B	protein coding gene	no	ENST00000617101.4	0.096	0.001	0.842	0.077(741)	0.12(84)	0.003(45)	non tumor-specific	nAS	yes
C1QTNF1-AS1_LS001	chr17:79019616|79019959:-	C1QTNF1-AS1	C1QTNF1 antisense RNA 1	lncRNA gene	no	ENST00000577521.1	0.072	0.050	0.762	0.007(65)	0.006(4)	0.008(132)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01873_LS001	chr2:66383349|66389399:+	LINC01873	long intergenic non-protein coding RNA 1873	lncRNA gene	no	ENST00000428647.1	0.490	0.049	0.621	0.001(9)	0.001(1)	0.001(9)	non tumor-specific	nAS	yes
PCNX2_LS027	chr1:233177898|233179066:-	PCNX2	pecanex 2	protein coding gene	no	ENST00000258229.13;ENST00000462233.5;ENST00000475463.6;ENST00000488780.6;ENST00000430153.5;ENST00000467336.6;ENST00000496510.6;ENST00000498302.1	3.091	1.653	4.752	0.884(8474)	0.845(593)	0.899(15619)	non tumor-specific	nAS	yes
UN_COL27A1_LS0082	chr9:114290076|114290810:+	COL27A1	collagen type XXVII alpha 1 chain	protein coding gene	no	.	3.973	0.230	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
EIF2B3_LS010	chr1:44925290|44926628:-	EIF2B3	eukaryotic translation initiation factor 2B subunit gamma	protein coding gene	no	ENST00000480675.5	0.029	0.034	0.628	0.063(604)	0.037(26)	0.061(1068)	non tumor-specific	nAS	yes
IRF3_LS058	chr19:49664846|49665635:-	IRF3	interferon regulatory factor 3	protein coding gene	yes	.;.	5.956	2.973	0.000	0.053(508)	0.067(47)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_STK32B_UP_LS0009	chr4:4959947|4977812:+	STK32B	serine/threonine kinase 32B	protein coding gene	no	.	2.286	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP002433.2_LS0002	chr11:108147458|108148691:+	AP002433.2	-	lncRNA gene	no	.	1.908	0.128	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
IL16_LS005	chr15:81197137|81225299:+	IL16	interleukin 16	protein coding gene	no	ENST00000394660.6	0.087	0.002	1.003	0.033(312)	0.048(34)	0.078(1354)	non tumor-specific	alt_5prime	yes
NLRP11_LS001	chr19:55785871|55788807:-	NLRP11	NLR family pyrin domain containing 11	protein coding gene	no	ENST00000589824.6;ENST00000592953.5;ENST00000589093.5;ENST00000590409.5	5.664	0.432	0.842	0.099(946)	0.048(34)	0.08(1391)	non tumor-specific	alt_5prime	yes
CCBE1_LS010	chr18:59480238|59696629:-	CCBE1	collagen and calcium binding EGF domains 1	protein coding gene	no	ENST00000439986.9;ENST00000649564.1;ENST00000650467.1	4.931	4.440	2.387	0.17(1633)	0.671(471)	0.564(9800)	non tumor-specific	nAS	yes
CTIF_LS023	chr18:48862625|48862879:+	CTIF	cap binding complex dependent translation initiation factor	protein coding gene	no	ENST00000590422.1	0.332	0.089	1.234	0.118(1131)	0.09(63)	0.475(8265)	non tumor-specific	alt_3prime;intron_retention	yes
UN_GANAB_LS0128	chr11:62626929|62627045:-	GANAB	glucosidase II alpha subunit	protein coding gene	yes	.	45.893	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HECW2_LS0054	chr2:196493375|196592772:-	HECW2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	.	0.486	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_BPTF_LS0051	chr17:67944372|67945230:+	BPTF	bromodomain PHD finger transcription factor	protein coding gene	no	.	19.923	4.290	0.000	0.016(153)	0.01(7)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_KCNN2_UP_LS0003	chr5:113613729|113691059:+	KCNN2	potassium calcium-activated channel subfamily N member 2	protein coding gene	no	.	11.065	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ARMC6_LS004	chr19:19033930|19039322:+	ARMC6	armadillo repeat containing 6	protein coding gene	no	ENST00000540707.5	0.017	0.001	0.869	0.059(565)	0.061(43)	0.074(1286)	non tumor-specific	exon_skip;mutex_exons	yes
CMBL_LS008	chr5:10290781|10307515:-	CMBL	carboxymethylenebutenolidase homolog	protein coding gene	no	ENST00000510532.5;ENST00000511963.5	0.223	1.126	1.449	0.678(6495)	0.826(580)	0.519(9017)	non tumor-specific	exon_skip	yes
PHYHIPL_LS008	chr10:59238705|59245057:+	PHYHIPL	phytanoyl-CoA 2-hydroxylase interacting protein like	protein coding gene	no	ENST00000373880.8;ENST00000486074.2;ENST00000373878.3	40.634	27.150	3.039	0.442(4233)	0.513(360)	0.547(9510)	non tumor-specific	exon_skip	yes
KDM5A_LS002	chr12:285662|292103:-	KDM5A	lysine demethylase 5A	protein coding gene	yes	.;.	1.034	0.145	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SCAMP2_LS0060	chr15:74844499|74844548:+	SCAMP2	secretory carrier membrane protein 2	protein coding gene	no	.	18.619	7.650	0.000	0.05(481)	0.041(29)	0(0)	non tumor-specific	nAS	no
KIF1B_LS022	chr1:10279138|10282400:+	KIF1B	kinesin family member 1B	protein coding gene	yes	ENST00000622724.3	0.425	0.171	1.252	0.039(378)	0.01(7)	0.226(3931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RF00432_UP_LS0003	chr7:138215722|138216564:-	RF00432	-	small non-coding RNA gene	no	.	3.076	0.353	0.000	0.007(65)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARHGAP4_LS043	chrX:153921223|153921365:-	ARHGAP4	Rho GTPase activating protein 4	protein coding gene	no	ENST00000470979.1	0.124	0.129	0.714	0.16(1533)	0.108(76)	0.064(1112)	non tumor-specific	alt_3prime;exon_skip	yes
LRRC45_LS011	chr17:82025507|82026899:+	LRRC45	leucine rich repeat containing 45	protein coding gene	no	ENST00000306688.7;ENST00000306688.7	27.501	10.052	13.157	0.992(9503)	0.989(694)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
BCS1L_LS034	chr2:218661307|218661406:+	BCS1L	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein coding gene	no	ENST00000430322.5;ENST00000456050.5;ENST00000359273.7;ENST00000392109.5;ENST00000392110.6;ENST00000423377.5;ENST00000392111.6;ENST00000412366.5;ENST00000439945.5;ENST00000431802.5;ENST00000643945.1;ENST00000493376.1	18.785	10.555	46.606	0.996(9547)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_LINC01320_LS0087	chr2:34286747|34297469:+	LINC01320	long intergenic non-protein coding RNA 1320	lncRNA gene	no	.	4.602	1.401	0.000	0.006(61)	0.021(15)	0(0)	non tumor-specific	nAS	no
HHIPL1_LS003	chr14:99657143|99659428:+	HHIPL1	HHIP like 1	protein coding gene	no	ENST00000330710.9;ENST00000357223.2	3.504	2.063	3.152	0.516(4944)	0.497(349)	0.817(14207)	non tumor-specific	exon_skip	yes
UN_C5_LS0041	chr9:121046383|121047749:-	C5	complement C5	protein coding gene	no	.	0.668	0.037	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C20orf194_LS0034	chr20:3315785|3316673:-	C20orf194	chromosome 20 open reading frame 194	protein coding gene	no	.	1.307	0.045	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_PHYKPL_LS0041	chr5:178222610|178222852:-	PHYKPL	5-phosphohydroxy-L-lysine phospho-lyase	protein coding gene	no	.	5.384	1.245	0.000	0.013(124)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ADAMTS10_LS003	chr19:8585054|8585132:-	ADAMTS10	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein coding gene	no	ENST00000595838.5;ENST00000270328.8;ENST00000593913.5;ENST00000597188.5;ENST00000596851.5	4.213	1.846	11.899	0.408(3909)	0.309(217)	0.944(16407)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ACVR1B_LS0024	chr12:51984166|51985169:+	ACVR1B	activin A receptor type 1B	protein coding gene	no	.	1.262	0.384	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CLCN6_LS003	chr1:11807190|11816615:+	CLCN6	chloride voltage-gated channel 6	protein coding gene	no	ENST00000312413.10	0.043	0.064	0.636	0.439(4207)	0.527(370)	0.022(377)	non tumor-specific	exon_skip	yes
SLC12A4_LS023	chr16:67950711|67950962:-	SLC12A4	solute carrier family 12 member 4	protein coding gene	no	ENST00000316341.7;ENST00000422611.6;ENST00000572037.5;ENST00000541864.6;ENST00000576616.5;ENST00000570802.5;ENST00000537830.6;ENST00000574665.5;ENST00000573702.1	41.708	30.263	63.160	0.98(9393)	0.989(694)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MST1P2_LS004	chr1:16646901|16646980:+	MST1P2	macrophage stimulating 1 pseudogene 2	pseudogene	no	ENST00000457982.3	3.474	2.255	1.848	0.146(1399)	0.124(87)	0.703(12212)	non tumor-specific	nAS	yes
ARPC3_LS013	chr12:110437152|110445452:-	ARPC3	actin related protein 2/3 complex subunit 3	protein coding gene	no	ENST00000548878.6;ENST00000548878.6	0.450	2.886	1.877	0.852(8166)	0.865(607)	0.832(14467)	non tumor-specific	alt_3prime;exon_skip	yes
SLC43A2_LS022	chr17:1615034|1627715:-	SLC43A2	solute carrier family 43 member 2	protein coding gene	no	ENST00000572801.5	0.027	0.018	1.032	0.429(4106)	0.477(335)	0.446(7749)	non tumor-specific	exon_skip	yes
RRP36_LS004	chr6:43026141|43027130:+	RRP36	ribosomal RNA processing 36	protein coding gene	no	ENST00000607394.1	3.287	0.774	5.154	0.835(7998)	0.832(584)	0.956(16610)	non tumor-specific	alt_3prime	yes
VPS50_LS033	chr7:93311272|93340598:+	VPS50	VPS50 subunit of EARP/GARPII complex	protein coding gene	no	ENST00000471188.5	0.131	0.044	0.714	0.045(429)	0.046(32)	0.005(81)	non tumor-specific	mutex_exons	yes
PEX10_LS003	chr1:2405828|2406484:-	PEX10	peroxisomal biogenesis factor 10	protein coding gene	no	ENST00000507596.5	23.031	12.831	0.982	0.7(6711)	0.647(454)	0.572(9949)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CACNA1C_LS0003	chr12:1997523|1997935:-	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	.	3.991	0.182	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
MPI_LS010	chr15:74890089|74891379:+	MPI	mannose phosphate isomerase	protein coding gene	no	ENST00000564003.5;ENST00000535694.5;ENST00000564003.5;ENST00000535694.5;ENST00000564003.5;ENST00000535694.5	0.071	0.103	1.519	0.653(6255)	0.684(480)	0.755(13131)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ASPH_LS0060	chr8:61578956|61579006:+	ASPH	aspartate beta-hydroxylase	protein coding gene	no	.	5.188	1.890	0.000	0.019(185)	0.017(12)	0(0)	non tumor-specific	nAS	no
MACROD2_LS012	chr20:14684959|14892703:+	MACROD2	mono-ADP ribosylhydrolase 2	protein coding gene	no	ENST00000464883.5	0.051	0.000	0.627	0(3)	0(0)	0.006(98)	non tumor-specific	nAS	yes
UN_AC131160.1_LS0015	chr3:183820443|183822316:-	AC131160.1	-	protein coding gene	no	.	1.389	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01252_LS009	chr12:11559382|11590250:+	LINC01252	long intergenic non-protein coding RNA 1252	lncRNA gene	no	ENST00000541162.1	0.300	0.141	0.735	0.057(545)	0.053(37)	0.127(2210)	non tumor-specific	nAS	yes
UN_TPM2_LS0004	chr9:35682163|35682524:-	TPM2	tropomyosin 2	protein coding gene	no	.	18.260	2.720	0.000	0.014(130)	0.004(3)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_INTU_LS0017	chr4:127687867|127699259:+	INTU	inturned planar cell polarity protein	protein coding gene	no	.	2.264	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
DCC_LS041	chr18:53486952|53499301:+	DCC	DCC netrin 1 receptor	protein coding gene	yes	.;.	1.068	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_CHAMP1_LS0005	chr13:114322314|114323791:+	CHAMP1	chromosome alignment maintaining phosphoprotein 1	protein coding gene	no	.	6.720	0.609	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DDX1_LS0030	chr2:15630107|15630776:+	DDX1	DEAD-box helicase 1	protein coding gene	no	.	27.656	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
OAT_LS015	chr10:124412200|124418158:-	OAT	ornithine aminotransferase	protein coding gene	no	ENST00000476917.5	0.080	0.140	0.728	0.36(3446)	0.387(272)	0.164(2848)	non tumor-specific	exon_skip;mutex_exons	yes
FNDC1_LS018	chr6:159249182|159251302:+	FNDC1	fibronectin type III domain containing 1	protein coding gene	no	ENST00000297267.13;ENST00000329629.8	24.017	17.828	3.784	0.679(6504)	0.635(446)	0.683(11879)	non tumor-specific	exon_skip	yes
DAG1_LS051	chr3:49492973|49510419:+	DAG1	dystroglycan 1	protein coding gene	no	ENST00000541308.5;ENST00000452317.5;ENST00000466701.1;ENST00000496474.1;ENST00000475424.1	0.128	0.245	1.405	0.624(5975)	0.741(520)	0.628(10909)	non tumor-specific	exon_skip;mutex_exons	yes
MMP20_LS004	chr11:102593595|102594621:-	MMP20	symbol withdrawn, see [HGNC:14246](/data/gene-symbol-report/#!/hgnc_id/HGNC:14246)	protein coding gene	no	ENST00000260228.2	5.719	0.344	0.662	0.016(153)	0.007(5)	0.017(294)	non tumor-specific	nAS	yes
UN_RAB21_UP_LS0001	chr12:71702966|71745865:+	RAB21	RAB21, member RAS oncogene family	protein coding gene	no	.	0.788	0.113	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PARN_LS0023	chr16:14482827|14511216:-	PARN	poly(A)-specific ribonuclease	protein coding gene	no	.	6.036	0.530	0.000	0.047(454)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
HLA-DRB6_LS001	chr6:32553072|32553376:-	HLA-DRB6	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudogene	no	ENST00000411500.5;ENST00000437183.5;ENST00000437650.2	49.979	63.438	6.444	0.815(7808)	0.86(604)	0.545(9466)	non tumor-specific	nAS	yes
ANAPC16_LS021	chr10:72224056|72233001:+	ANAPC16	anaphase promoting complex subunit 16	protein coding gene	no	ENST00000615507.4	0.573	1.886	0.871	0.917(8781)	0.932(654)	0.504(8761)	non tumor-specific	exon_skip	yes
ABCC12_LS008	chr16:48085706|48087936:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	.;.	2.902	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
CHD3_LS060	chr17:7909338|7910847:+	CHD3	chromodomain helicase DNA binding protein 3	protein coding gene	no	ENST00000449744.1;ENST00000449744.1	0.445	0.237	0.953	0.851(8153)	0.785(551)	0.378(6566)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
HOXD8_LS008	chr2:176130943|176131320:+	HOXD8	homeobox D8	protein coding gene	no	ENST00000450510.2	3.687	3.724	5.751	0.751(7191)	0.781(548)	0.696(12092)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TMEM138_LS011	chr11:61367998|61368597:+	TMEM138	transmembrane protein 138	protein coding gene	no	ENST00000278826.10;ENST00000423772.6;ENST00000545420.1;ENST00000381787.2;ENST00000539776.1	55.813	28.922	23.960	0.993(9513)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WDR44_LS0014	chrX:118432894|118441368:+	WDR44	WD repeat domain 44	protein coding gene	no	.	2.295	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CYP19A1_LS007	chr15:51218655|51227779:-	CYP19A1	cytochrome P450 family 19 subfamily A member 1	protein coding gene	no	ENST00000561075.5	1.382	0.000	0.796	0.004(43)	0(0)	0.091(1584)	non tumor-specific	exon_skip	yes
PTER_LS008	chr10:16437621|16484337:+	PTER	phosphotriesterase related	protein coding gene	no	.;.	1.556	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UBAP2_LS029	chr9:33948587|33953285:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	ENST00000379238.5;ENST00000360802.5;ENST00000629575.2;ENST00000412543.5;ENST00000421278.2	26.963	15.027	15.642	0.958(9175)	0.976(685)	0.974(16926)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL034405.1_LS0007	chrX:129929895|129933702:-	AL034405.1	-	lncRNA gene	no	.	1.849	0.799	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC015908.2_LS003	chr17:10849558|10880472:+	AC015908.2	-	lncRNA gene	no	ENST00000581910.5	0.125	0.107	0.750	0.08(763)	0.167(117)	0.023(399)	non tumor-specific	nAS	yes
UN_SNRPCP3_UP_LS0003	chr3:150734864|150736342:-	SNRPCP3	small nuclear ribonucleoprotein polypeptide C pseudogene 3	pseudogene	no	.	2.965	0.669	0.000	0.019(184)	0.024(17)	0(0)	non tumor-specific	nAS	no
CLTC_LS026	chr17:59681478|59681647:+	CLTC	clathrin heavy chain	protein coding gene	no	ENST00000621829.4;ENST00000393043.5;ENST00000269122.7	277.739	198.570	102.464	0.96(9201)	0.986(692)	0.979(17019)	non tumor-specific	nAS	yes
UN_RBM26-AS1_LS0022	chr13:79412907|79417835:+	RBM26-AS1	RBM26 antisense RNA 1	lncRNA gene	no	.	2.207	0.068	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
ZNF208_LS003	chr19:21941424|21987216:-	ZNF208	zinc finger protein 208	protein coding gene	no	ENST00000601773.5	0.157	0.021	0.779	0.068(651)	0.11(77)	0.033(571)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SH2B1_LS0050	chr16:28866874|28866942:+	SH2B1	SH2B adaptor protein 1	protein coding gene	no	.	7.066	0.093	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MIR3144_UP_LS0039	chr6:119810217|119817062:+	MIR3144	microRNA 3144	small non-coding RNA gene	no	.	5.698	0.547	0.000	0.011(101)	0.014(10)	0(0)	non tumor-specific	nAS	no
LINC01395_LS002	chr11:129614487|129615307:-	LINC01395	long intergenic non-protein coding RNA 1395	lncRNA gene	no	ENST00000631195.1	1.228	0.087	0.628	0.004(34)	0.003(2)	0.012(210)	non tumor-specific	nAS	yes
UN_APLF_LS0003	chr2:68478340|68490190:+	APLF	aprataxin and PNKP like factor	protein coding gene	no	.	1.069	0.157	0.000	0.011(102)	0.011(8)	0(0)	non tumor-specific	nAS	no
STIL_LS022	chr1:47301748|47302234:-	STIL	STIL centriolar assembly protein	protein coding gene	yes	ENST00000360380.7;ENST00000337817.9;ENST00000371877.7;ENST00000396221.6;ENST00000447475.6	2.034	0.415	1.124	0.548(5249)	0.259(182)	0.483(8399)	non tumor-specific	alt_5prime;exon_skip	yes
HDAC1_LS007	chr1:32316782|32326939:+	HDAC1	histone deacetylase 1	protein coding gene	yes	ENST00000428704.1	1.481	0.915	0.701	0.3(2874)	0.286(201)	0.201(3494)	non tumor-specific	exon_skip	yes
FAM187B_LS001	chr19:35225212|35227959:-	FAM187B	family with sequence similarity 187 member B	protein coding gene	no	ENST00000324675.3	0.102	0.076	0.749	0.062(594)	0.101(71)	0.152(2648)	non tumor-specific	nAS	yes
PAM_LS021	chr5:102925042|102926585:+	PAM	peptidylglycine alpha-amidating monooxygenase	protein coding gene	no	ENST00000502472.5;ENST00000438793.7;ENST00000346918.6;ENST00000345721.6;ENST00000348126.6;ENST00000304400.11;ENST00000455264.6;ENST00000509636.5;ENST00000506260.1	40.502	38.518	58.262	0.955(9152)	0.974(684)	0.977(16988)	non tumor-specific	exon_skip	yes
UN_DXO_UP_LS0308	chr6:32002577|32035146:-	DXO	decapping exoribonuclease	protein coding gene	no	.	11.145	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LSM14B_LS0019	chr20:62131506|62133296:+	LSM14B	LSM family member 14B	protein coding gene	no	.	18.133	1.579	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DGCR5_LS0029	chr22:18987900|18988098:+	DGCR5	DiGeorge syndrome critical region gene 5	pseudogene	no	.	2.597	0.222	0.000	0.011(108)	0.004(3)	0(0)	non tumor-specific	nAS	no
NEDD9_LS008	chr6:11193692|11213281:-	NEDD9	neural precursor cell expressed, developmentally down-regulated 9	protein coding gene	yes	ENST00000379446.9;ENST00000504387.5;ENST00000379446.9;ENST00000504387.5	32.258	54.700	18.112	0.954(9136)	0.989(694)	0.967(16803)	non tumor-specific	alt_5prime;exon_skip	yes
ERICH3-AS1_LS004	chr1:74615296|74621396:+	ERICH3-AS1	ERICH3 antisense RNA 1	lncRNA gene	no	ENST00000612390.4;ENST00000416017.1	1.084	0.000	0.665	0.002(19)	0(0)	0.003(58)	non tumor-specific	nAS	yes
DLC1_LS027	chr8:13500196|13515459:-	DLC1	dynein light chain LC8-type 1	protein coding gene	yes	ENST00000517333.1	0.143	0.060	1.066	0.111(1068)	0.197(138)	0.321(5580)	non tumor-specific	nAS	yes
UN_S100A1_LS0015	chr1:153631082|153632009:-	S100A1	S100 calcium binding protein A1	protein coding gene	no	.	4.067	0.140	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
RPS15A_LS011	chr16:18788159|18788981:-	RPS15A	ribosomal protein S15a	protein coding gene	no	ENST00000569365.6	39.548	62.015	1.413	0.84(8051)	0.833(585)	0.722(12554)	non tumor-specific	alt_3prime;exon_skip	yes
MUC4_LS377	chr3:195786649|195787034:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	0.877	0.358	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
NOL8_LS022	chr9:92319356|92321668:-	NOL8	nucleolar protein 8	protein coding gene	no	ENST00000442668.6;ENST00000358855.8;ENST00000536593.5;ENST00000545558.5;ENST00000360868.7;ENST00000544867.5;ENST00000535387.5;ENST00000542053.5;ENST00000432670.6;ENST00000433029.6;ENST00000421075.6;ENST00000411621.6;ENST00000535807.5;ENST00000536624.5;ENST00000542613.5;ENST00000542573.5;ENST00000543260.5	10.398	5.716	7.603	0.929(8901)	0.973(683)	0.96(16681)	non tumor-specific	exon_skip	yes
USP40_LS001	chr2:233477503|233481203:-	USP40	ubiquitin specific peptidase 40	protein coding gene	no	ENST00000450966.5;ENST00000483519.5;ENST00000251722.10;ENST00000427112.6	29.218	19.033	36.508	0.991(9497)	0.994(698)	0.977(16985)	non tumor-specific	alt_3prime	yes
UN_LINC00640_LS0003	chr14:51333564|51348503:+	LINC00640	long intergenic non-protein coding RNA 640	lncRNA gene	no	.	1.990	0.559	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	nAS	no
THADA_LS054	chr2:43586449|43586702:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405975.6;ENST00000405006.8;ENST00000398653.5;ENST00000408045.7;ENST00000402360.6;ENST00000404790.5;ENST00000474159.6;ENST00000403856.1	5.163	3.219	6.112	0.845(8099)	0.919(645)	0.934(16230)	non tumor-specific	nAS	yes
RNF157_LS006	chr17:76152465|76154283:-	RNF157	ring finger protein 157	protein coding gene	no	ENST00000269391.10;ENST00000319945.10;ENST00000591355.1	9.844	6.300	4.112	0.646(6185)	0.662(465)	0.825(14332)	non tumor-specific	alt_5prime;exon_skip	yes
SVIL2P_LS018	chr10:30709453|30711362:+	SVIL2P	supervillin family member 2, pseudogene	pseudogene	no	ENST00000422642.6	1.148	0.000	0.367	0(2)	0(0)	0.001(20)	non tumor-specific	nAS	yes
PFKP_LS005	chr10:3067707|3082388:+	PFKP	phosphofructokinase, platelet	protein coding gene	no	ENST00000381125.8;ENST00000381125.8	47.673	31.207	29.379	0.941(9012)	0.954(670)	0.972(16899)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LPP_LS0065	chr3:188326285|188341656:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	.	1.141	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LYSMD2_LS0009	chr15:51725121|51736940:-	LYSMD2	LysM domain containing 2	protein coding gene	no	.	1.288	0.361	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
SLC35G1_LS010	chr10:93898751|93900752:+	SLC35G1	solute carrier family 35 member G1	protein coding gene	no	ENST00000427197.1;ENST00000371408.7	2.232	1.800	1.245	0.576(5515)	0.658(462)	0.503(8743)	non tumor-specific	exon_skip	yes
DFFB_LS011	chr1:3858866|3865812:+	DFFB	DNA fragmentation factor subunit beta	protein coding gene	no	ENST00000468793.5;ENST00000475969.5	0.481	0.273	0.802	0.215(2056)	0.199(140)	0.356(6191)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_SHPK_LS0013	chr17:3615585|3615696:+	SHPK	sedoheptulokinase	protein coding gene	no	.	1.389	0.493	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
AGO4_LS007	chr1:35826835|35831427:+	AGO4	argonaute RISC component 4	protein coding gene	no	ENST00000373210.3	10.953	7.325	8.515	0.761(7289)	0.929(652)	0.968(16826)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ELSPBP1_UP_LS0003	chr19:47785270|47871125:+	ELSPBP1	epididymal sperm binding protein 1	protein coding gene	no	.	7.142	7.698	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
MELTF_LS016	chr3:197023113|197024303:-	MELTF	melanotransferrin	protein coding gene	no	ENST00000296350.9;ENST00000296351.8	18.269	5.409	3.227	0.783(7501)	0.732(514)	0.828(14389)	non tumor-specific	alt_3prime;exon_skip	yes
MND1_LS010	chr4:153394336|153408971:+	MND1	meiotic nuclear divisions 1	protein coding gene	no	ENST00000622785.4	0.550	0.240	0.748	0.487(4667)	0.124(87)	0.096(1666)	non tumor-specific	exon_skip;mutex_exons	yes
XPNPEP1_LS021	chr10:109882642|109884067:-	XPNPEP1	X-prolyl aminopeptidase 1	protein coding gene	no	ENST00000488118.6;ENST00000369683.5;ENST00000502935.5;ENST00000322238.12;ENST00000472336.5;ENST00000513817.5;ENST00000512582.5;ENST00000509646.5;ENST00000460523.5;ENST00000403138.6;ENST00000430337.5;ENST00000423625.1;ENST00000443078.5;ENST00000508059.5	51.719	32.468	38.451	0.992(9504)	0.996(699)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_AC109779.1_LS0006	chr3:178225689|178226095:-	AC109779.1	-	lncRNA gene	no	.	2.067	0.698	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
PROM1_LS006	chr4:15971082|15980422:-	PROM1	prominin 1	protein coding gene	no	ENST00000539194.5	1.464	0.136	1.536	0.218(2086)	0.316(222)	0.328(5701)	non tumor-specific	exon_skip	yes
ZNF282_LS008	chr7:149210704|149212378:+	ZNF282	zinc finger protein 282	protein coding gene	no	.;.	2.207	0.312	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HERC2_LS0075	chr15:28218668|28220452:-	HERC2	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	.	3.389	0.372	0.000	0.012(119)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
LINC00858_LS004	chr10:84289044|84291407:+	LINC00858	long intergenic non-protein coding RNA 858	lncRNA gene	no	ENST00000415469.5	0.235	0.000	0.589	0.01(93)	0(0)	0(4)	non tumor-specific	nAS	yes
UN_CEP290_UP_LS0011	chr12:88348599|88371025:-	CEP290	centrosomal protein 290	protein coding gene	no	.	2.347	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPS6_LS0052	chr9:19378475|19378812:+	RPS6	ribosomal protein S6	protein coding gene	no	.	66.276	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CABIN1_LS0055	chr22:24087713|24095931:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	0.800	0.841	0.000	0.022(206)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
CBWD6_LS019	chr9:41161723|41162333:-	CBWD6	COBW domain containing 6	protein coding gene	no	ENST00000494538.6;ENST00000613125.4;ENST00000617722.4	0.160	0.147	1.755	0.509(4879)	0.449(315)	0.771(13406)	non tumor-specific	nAS	yes
UN_CUL9_LS0019	chr6:43196862|43198690:+	CUL9	cullin 9	protein coding gene	no	.	2.465	0.821	0.000	0.008(79)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FAM193A_LS020	chr4:2689704|2690698:+	FAM193A	family with sequence similarity 193 member A	protein coding gene	no	ENST00000637812.1;ENST00000545951.5;ENST00000382839.7;ENST00000512465.5;ENST00000324666.9;ENST00000502458.5;ENST00000513898.5;ENST00000505311.5;ENST00000513350.2	21.146	12.430	16.124	0.964(9238)	0.983(690)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip	yes
SLC1A5_LS011	chr19:46784559|46787400:-	SLC1A5	solute carrier family 1 member 5	protein coding gene	no	ENST00000542575.6	89.705	45.870	41.451	0.959(9185)	0.987(693)	0.939(16326)	non tumor-specific	alt_5prime;exon_skip	yes
C3orf84_LS003	chr3:49178538|49190025:-	C3orf84	chromosome 3 open reading frame 84	protein coding gene	no	ENST00000545770.6;ENST00000432035.2	1.065	0.000	0.696	0(4)	0(0)	0.005(84)	non tumor-specific	nAS	yes
FGF8_LS007	chr10:101774879|101775740:-	FGF8	fibroblast growth factor 8	protein coding gene	yes	ENST00000618991.4;ENST00000346714.7;ENST00000618991.4;ENST00000346714.7	1.175	0.013	0.689	0.028(269)	0.001(1)	0.026(457)	non tumor-specific	alt_3prime;exon_skip	yes
AC122710.1_LS002	chr5:6870858|6886426:+	AC122710.1	-	lncRNA gene	no	ENST00000510622.1	1.556	0.083	0.993	0.022(210)	0.011(8)	0.065(1135)	non tumor-specific	nAS	yes
UN_AC093813.1_UP_LS0015	chr7:156012407|156016347:+	AC093813.1	-	pseudogene	no	.	6.089	0.900	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
MMP10_LS006	chr11:102776776|102778624:-	MMP10	matrix metallopeptidase 10	protein coding gene	no	ENST00000279441.8	13.569	6.958	0.959	0.444(4252)	0.214(150)	0.118(2049)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC90B_LS011	chr11:83267038|83273647:-	CCDC90B	coiled-coil domain containing 90B	protein coding gene	no	ENST00000533761.5	0.038	0.279	0.826	0.273(2614)	0.33(232)	0.365(6345)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AP005230.1_LS010	chr18:2126377|2131497:-	AP005230.1	-	lncRNA gene	no	ENST00000579097.1	0.767	0.100	0.684	0.067(643)	0.007(5)	0.003(51)	non tumor-specific	nAS	yes
UN_EPAS1_LS0036	chr2:46380705|46384612:-	EPAS1	endothelial PAS domain protein 1	protein coding gene	yes	.	1.003	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LONRF3_LS011	chrX:119009247|119011815:+	LONRF3	LON peptidase N-terminal domain and ring finger 3	protein coding gene	no	ENST00000304778.11;ENST00000481285.5;ENST00000371628.7;ENST00000439603.5;ENST00000472173.5;ENST00000422289.3	4.777	5.386	4.300	0.593(5679)	0.868(609)	0.873(15170)	non tumor-specific	exon_skip	yes
UN_LINC01267_UP_LS0007	chr3:14390390|14390971:-	LINC01267	long intergenic non-protein coding RNA 1267	lncRNA gene	no	.	1.707	0.775	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
KALRN_LS045	chr3:124504950|124562843:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	ENST00000393496.5	0.177	0.104	0.807	0.047(454)	0.016(11)	0.037(635)	non tumor-specific	nAS	yes
ARAF_LS023	chrX:47570024|47570878:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8;ENST00000470206.1	125.738	88.046	82.270	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_DDX60L_LS0017	chr4:168380364|168429765:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	.	1.594	0.047	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARNTL2_LS009	chr12:27370230|27380247:+	ARNTL2	aryl hydrocarbon receptor nuclear translocator like 2	protein coding gene	no	ENST00000311001.9;ENST00000457040.6	1.177	0.597	1.027	0.549(5258)	0.377(265)	0.395(6863)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AKR1C4_UP_LS0006	chr10:4972310|5102485:+	AKR1C4	aldo-keto reductase family 1 member C4	protein coding gene	no	.	326.272	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
AOAH_LS004	chr7:36522115|36530418:-	AOAH	acyloxyacyl hydrolase	protein coding gene	no	ENST00000612871.4;ENST00000617537.4;ENST00000617267.4;ENST00000614254.1	19.859	9.840	5.734	0.953(9131)	0.979(687)	0.901(15663)	non tumor-specific	exon_skip	yes
PNPLA6_LS019	chr19:7540710|7540932:+	PNPLA6	patatin like phospholipase domain containing 6	protein coding gene	no	ENST00000594551.1	0.476	0.362	0.653	0.084(808)	0.098(69)	0.08(1396)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GALNT2_LS0042	chr1:230279359|230279620:-	GALNT2	polypeptide N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	3.118	0.055	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
GON4L_LS041	chr1:155827028|155831535:-	GON4L	gon-4 like	protein coding gene	no	ENST00000488251.1	0.296	0.338	0.780	0.374(3588)	0.395(277)	0.358(6222)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ATG4A_LS0012	chrX:108128856|108131260:+	ATG4A	autophagy related 4A cysteine peptidase	protein coding gene	no	.	1.783	0.195	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC064875.1_UP_LS0022	chr2:13516863|13523277:-	AC064875.1	-	lncRNA gene	no	.	2.623	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC011287.2_UP_LS0013	chr7:13806380|13806527:-	AC011287.2	-	lncRNA gene	no	.	1.865	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SIDT1_LS030	chr3:113619726|113623427:+	SIDT1	SID1 transmembrane family member 1	protein coding gene	no	ENST00000264852.8;ENST00000393830.4;ENST00000463226.1	6.268	5.864	2.199	0.475(4555)	0.632(444)	0.623(10825)	non tumor-specific	nAS	yes
IQSEC2_LS031	chrX:53279659|53281496:-	IQSEC2	IQ motif and Sec7 domain ArfGEF 2	protein coding gene	no	ENST00000375365.2;ENST00000498281.2;ENST00000462054.6;ENST00000639161.1;ENST00000639543.1	8.641	7.605	5.642	0.898(8605)	0.919(645)	0.929(16143)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TPCN2_LS0003	chr11:69049106|69049540:+	TPCN2	two pore segment channel 2	protein coding gene	no	.	0.416	0.024	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
C19orf12_LS001	chr19:29702792|29702848:-	C19orf12	chromosome 19 open reading frame 12	protein coding gene	no	ENST00000592153.5	0.710	1.173	1.019	0.657(6297)	0.721(506)	0.58(10090)	non tumor-specific	intron_retention	yes
UN_AD000671.1_LS0023	chr19:35746867|35746914:+	AD000671.1	-	protein coding gene	no	.	132.857	31.740	0.000	0.03(292)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_SMS_LS0030	chrX:21992712|21994121:+	SMS	spermine synthase	protein coding gene	no	.	128.211	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
STX7_LS001	chr6:132460850|132463993:-	STX7	syntaxin 7	protein coding gene	no	ENST00000367941.6	12.369	12.443	61.109	0.989(9478)	0.993(697)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ZBTB7A_LS0100	chr19:4055247|4063876:-	ZBTB7A	zinc finger and BTB domain containing 7A	protein coding gene	yes	.	0.933	0.174	0.000	0.009(82)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_SLC43A1_LS0016	chr11:57489480|57491224:-	SLC43A1	solute carrier family 43 member 1	protein coding gene	no	.	5.201	2.066	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_WDR13_LS0031	chrX:48600623|48601784:+	WDR13	WD repeat domain 13	protein coding gene	no	.	33.819	2.348	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_POGZ_LS0020	chr1:151428407|151429603:-	POGZ	pogo transposable element derived with ZNF domain	protein coding gene	no	.	5.643	1.249	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_WTAP_LS0007	chr6:159727333|159738990:+	WTAP	WT1 associated protein	protein coding gene	no	.	1.460	0.128	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
EML1_LS001	chr14:99737860|99850853:+	EML1	EMAP like 1	protein coding gene	no	ENST00000554479.5;ENST00000555145.5	0.428	1.738	2.498	0.545(5224)	0.843(592)	0.698(12138)	non tumor-specific	exon_skip	yes
UN_MID1_LS0015	chrX:10567603|10613340:-	MID1	midline 1	protein coding gene	no	.	1.728	0.346	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL671762.1_UP_LS0209	chr6:31816240|31828305:+	AL671762.1	-	lncRNA gene	no	.	96.381	2.919	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SRP14-AS1_LS0014	chr15:40046069|40060097:+	SRP14-AS1	SRP14 antisense RNA1 (head to head)	lncRNA gene	no	.	2.519	1.407	0.000	0.053(507)	0.067(47)	0(0)	non tumor-specific	nAS	no
IKZF1_LS010	chr7:50327757|50368006:+	IKZF1	IKAROS family zinc finger 1	protein coding gene	yes	ENST00000642219.1;ENST00000646110.1;ENST00000413698.5;ENST00000612658.4;ENST00000492782.6	2.506	1.228	1.271	0.473(4528)	0.514(361)	0.403(7004)	non tumor-specific	nAS	yes
UN_IVL_LS0061	chr1:152910742|152911394:-	IVL	involucrin	protein coding gene	no	.	5.244	0.552	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	nAS	no
NCMAP_LS002	chr1:24589624|24595424:+	NCMAP	non-compact myelin associated protein	protein coding gene	no	ENST00000486262.1	0.926	0.187	1.117	0.03(287)	0.07(49)	0.129(2248)	non tumor-specific	nAS	yes
POLR1B_LS013	chr2:112547567|112549267:+	POLR1B	RNA polymerase I subunit B	protein coding gene	no	ENST00000263331.9;ENST00000541869.5;ENST00000333990.10;ENST00000409894.7;ENST00000424062.1;ENST00000417433.6;ENST00000468475.1	11.523	6.015	4.008	0.915(8769)	0.974(684)	0.911(15835)	non tumor-specific	exon_skip;intron_retention	yes
BAZ2B_LS029	chr2:159395834|159397345:-	BAZ2B	bromodomain adjacent to zinc finger domain 2B	protein coding gene	no	ENST00000392782.5;ENST00000392783.6;ENST00000551504.5;ENST00000392782.5;ENST00000392783.6;ENST00000551504.5	4.856	4.810	3.089	0.728(6971)	0.885(621)	0.47(8175)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM192_LS0008	chr4:165079796|165085575:-	TMEM192	transmembrane protein 192	protein coding gene	no	.	2.643	0.982	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
GTPBP1_LS002	chr22:38706147|38708845:+	GTPBP1	GTP binding protein 1	protein coding gene	no	ENST00000216044.9;ENST00000461428.1	3.425	3.149	17.016	0.955(9152)	0.98(688)	0.977(16990)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NNT-AS1_LS0013	chr5:43575935|43578301:-	NNT-AS1	NNT antisense RNA 1	lncRNA gene	no	.	1.378	0.018	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
SDHD_LS009	chr11:112089011|112107545:+	SDHD	succinate dehydrogenase complex subunit D	protein coding gene	yes	ENST00000534010.1	0.158	0.043	0.839	0.092(884)	0.097(68)	0.476(8267)	non tumor-specific	nAS	yes
UN_IARS_LS0026	chr9:92251814|92288218:-	IARS	isoleucyl-tRNA synthetase 1	protein coding gene	no	.	22.685	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DGKQ_LS0011	chr4:961320|961467:-	DGKQ	diacylglycerol kinase theta	protein coding gene	no	.	3.899	0.569	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	nAS	no
KNDC1_LS008	chr10:133183490|133183872:+	KNDC1	kinase non-catalytic C-lobe domain containing 1	protein coding gene	no	ENST00000304613.7;ENST00000368571.2	7.482	6.344	2.968	0.376(3599)	0.466(327)	0.638(11089)	non tumor-specific	nAS	yes
UN_MAPKAPK3_LS0045	chr3:50647203|50647897:+	MAPKAPK3	MAPK activated protein kinase 3	protein coding gene	no	.	16.115	6.663	0.000	0.053(509)	0.07(49)	0(0)	non tumor-specific	alt_3prime	no
UN_IL18R1_LS0004	chr2:102337337|102337848:+	IL18R1	interleukin 18 receptor 1	protein coding gene	no	.	20.042	3.148	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
GMEB2_LS011	chr20:63619454|63626956:-	GMEB2	glucocorticoid modulatory element binding protein 2	protein coding gene	no	ENST00000370077.1	2.263	1.323	3.276	0.862(8260)	0.896(629)	0.925(16086)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ADARB1_LS0012	chr21:45118619|45128402:+	ADARB1	adenosine deaminase RNA specific B1	protein coding gene	yes	.	0.486	3.607	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
AC013436.1_LS001	chr7:44785254|44787124:-	AC013436.1	-	lncRNA gene	no	ENST00000425077.1	0.078	0.000	0.459	0.001(5)	0(0)	0(1)	non tumor-specific	nAS	yes
SNHG17_LS011	chr20:38427766|38431041:-	SNHG17	small nucleolar RNA host gene 17	lncRNA gene	no	ENST00000414142.5	2.291	0.552	1.275	0.838(8029)	0.65(456)	0.605(10522)	non tumor-specific	nAS	yes
DISC1FP1_LS002	chr11:90361622|90546754:+	DISC1FP1	DISC1 fusion partner 1	lncRNA gene	no	ENST00000649150.1	0.616	2.043	0.000	0(1)	0.003(2)	0(0)	non tumor-specific	nAS	yes
WDSUB1_LS008	chr2:159259843|159271702:-	WDSUB1	WD repeat, sterile alpha motif and U-box domain containing 1	protein coding gene	no	ENST00000359774.8;ENST00000392796.7;ENST00000409990.7;ENST00000409124.1	13.631	11.599	6.985	0.977(9357)	0.99(695)	0.96(16691)	non tumor-specific	exon_skip;mutex_exons	yes
PMAIP1_LS004	chr18:59900714|59902647:+	PMAIP1	phorbol-12-myristate-13-acetate-induced protein 1	protein coding gene	no	ENST00000590596.1	0.553	0.325	0.691	0.061(586)	0.017(12)	0.049(852)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LRRC23_LS015	chr12:6907445|6909890:+	LRRC23	leucine rich repeat containing 23	protein coding gene	no	ENST00000007969.12;ENST00000451681.5;ENST00000323702.9;ENST00000431207.5;ENST00000443597.6	17.434	10.008	12.095	0.976(9350)	0.991(696)	0.974(16935)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ENTPD6_LS0014	chr20:25209925|25210003:+	ENTPD6	ectonucleoside triphosphate diphosphohydrolase 6	protein coding gene	no	.	2.180	0.558	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PABPC1L_LS056	chr20:44952704|44958337:+	PABPC1L	poly(A) binding protein cytoplasmic 1 like	protein coding gene	no	ENST00000372819.5	0.192	0.149	2.228	0.506(4852)	0.328(230)	0.812(14118)	non tumor-specific	exon_skip	yes
MOSPD2_LS002	chrX:14873758|14892723:+	MOSPD2	motile sperm domain containing 2	protein coding gene	no	ENST00000380492.7;ENST00000482354.5;ENST00000461777.1	8.781	6.351	6.334	0.927(8884)	0.969(680)	0.956(16625)	non tumor-specific	exon_skip	yes
LINC02013_LS001	chr3:190698150|190698551:-	LINC02013	long intergenic non-protein coding RNA 2013	lncRNA gene	no	ENST00000438156.1	0.166	0.000	0.715	0.001(14)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_DEAF1_LS0014	chr11:646555|653962:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	.	1.625	1.505	0.000	0.011(106)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC025887.2_LS002	chr18:32740926|32742852:+	AC025887.2	-	lncRNA gene	no	ENST00000646805.1	1.276	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
RPN2_LS031	chr20:37230059|37234020:+	RPN2	ribophorin II	protein coding gene	no	ENST00000437329.5;ENST00000470352.1	1.276	1.467	5.961	0.962(9214)	0.96(674)	0.943(16386)	non tumor-specific	exon_skip	yes
BICD2_LS005	chr9:92715463|92717797:-	BICD2	BICD cargo adaptor 2	protein coding gene	no	ENST00000356884.10;ENST00000375512.3	43.778	25.441	22.249	0.969(9284)	0.991(696)	0.978(16997)	non tumor-specific	nAS	yes
UN_ZNF121_LS0015	chr19:9564495|9566336:-	ZNF121	zinc finger protein 121	protein coding gene	no	.	2.299	0.960	0.000	0.084(803)	0.038(27)	0(0)	non tumor-specific	exon_skip	no
UN_FADS2_LS0023	chr11:61796275|61796342:+	FADS2	fatty acid desaturase 2	protein coding gene	no	.	20.620	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TXNRD3_LS010	chr3:126622540|126629379:-	TXNRD3	thioredoxin reductase 3	protein coding gene	no	ENST00000524230.6;ENST00000523403.2;ENST00000640797.1;ENST00000640433.1	16.148	11.109	7.987	0.953(9126)	0.981(689)	0.936(16262)	non tumor-specific	exon_skip	yes
UN_SCAMP4_LS0097	chr19:1925396|1925634:-	SCAMP4	secretory carrier membrane protein 4	protein coding gene	no	.	1.079	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ASMT_LS009	chrX:1633290|1636438:+	ASMT	acetylserotonin O-methyltransferase	protein coding gene	no	ENST00000381241.8;ENST00000381229.9	3.266	0.000	0.806	0.012(111)	0.001(1)	0.26(4522)	non tumor-specific	exon_skip	yes
CHAT_LS020	chr10:49662782|49664777:+	CHAT	choline O-acetyltransferase	protein coding gene	no	ENST00000339797.5;ENST00000395559.6;ENST00000351556.7;ENST00000337653.6;ENST00000466590.6;ENST00000395562.2;ENST00000640822.1;ENST00000638282.1;ENST00000638683.1	3.635	0.285	1.322	0.032(309)	0.023(16)	0.092(1606)	non tumor-specific	nAS	yes
UN_AC023490.3_UP_LS0003	chr22:18516486|18773767:-	AC023490.3	-	lncRNA gene	no	.	0.821	0.069	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC114401.1_LS001	chr3:67296403|67304380:+	AC114401.1	-	lncRNA gene	no	ENST00000484222.1	0.312	0.000	0.565	0.005(49)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_AP001000.1_UP_LS0021	chr11:128183946|128236244:-	AP001000.1	-	pseudogene	no	.	4.569	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DYNC1H1_LS0081	chr14:102050198|102050472:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	.	88.354	5.132	0.000	0.008(78)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_VIM-AS1_LS0009	chr10:17216274|17228856:-	VIM-AS1	VIM antisense RNA 1	lncRNA gene	no	.	0.756	0.191	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CWH43_LS0008	chr4:48998548|49007201:+	CWH43	cell wall biogenesis 43 C-terminal homolog	protein coding gene	no	.	2.902	2.745	0.000	0.006(60)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
GOLGA4_LS017	chr3:37286061|37287527:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000435830.6	0.270	0.000	0.623	0.002(16)	0(0)	0.002(32)	non tumor-specific	exon_skip;mutex_exons	yes
KIAA2012_LS025	chr2:202187098|202188152:+	KIAA2012	KIAA2012	protein coding gene	no	ENST00000541917.6;ENST00000498697.2;ENST00000469462.1	2.202	1.887	1.320	0.024(226)	0.073(51)	0.133(2318)	non tumor-specific	nAS	yes
NDST2_LS008	chr10:73804869|73805587:-	NDST2	N-deacetylase and N-sulfotransferase 2	protein coding gene	no	ENST00000299641.8;ENST00000309979.10;ENST00000639645.1	29.209	16.863	34.880	0.971(9306)	0.99(695)	0.979(17020)	non tumor-specific	nAS	yes
UN_TBC1D25_UP_LS0002	chrX:48531785|48535968:+	TBC1D25	TBC1 domain family member 25	protein coding gene	no	.	0.807	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AASS_LS033	chr7:122118630|122126375:-	AASS	aminoadipate-semialdehyde synthase	protein coding gene	no	ENST00000393376.5;ENST00000417368.6;ENST00000431170.5;ENST00000358954.6	6.156	6.014	11.899	0.652(6251)	0.906(636)	0.922(16020)	non tumor-specific	nAS	yes
MIB1_LS015	chr18:21815813|21819495:+	MIB1	mindbomb E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000578646.5;ENST00000261537.6;ENST00000577749.5;ENST00000578260.1	14.340	9.814	6.105	0.869(8322)	0.947(665)	0.929(16146)	non tumor-specific	exon_skip	yes
TUBD1_LS001	chr17:59860424|59863664:-	TUBD1	tubulin delta 1	protein coding gene	no	ENST00000613721.4;ENST00000325752.7;ENST00000346141.10;ENST00000340993.10;ENST00000376094.8;ENST00000592426.5;ENST00000539018.5;ENST00000591548.5	12.419	7.177	12.254	0.933(8938)	0.96(674)	0.973(16915)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC01106_LS0018	chr2:110375395|110375556:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	2.513	0.243	0.000	0.007(69)	0.01(7)	0(0)	non tumor-specific	nAS	no
TNC_LS046	chr9:115087273|115090562:-	TNC	tenascin C	protein coding gene	no	ENST00000535648.5;ENST00000350763.8;ENST00000341037.8;ENST00000423613.6;ENST00000537320.5;ENST00000542877.5	28.508	25.461	10.749	0.868(8313)	0.926(650)	0.797(13855)	non tumor-specific	exon_skip	yes
UN_SPARC_LS0084	chr5:151662976|151663107:+	SPARC	secreted protein acidic and cysteine rich	protein coding gene	yes	.	5.750	0.684	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATG13_LS0031	chr11:46672672|46672706:-	ATG13	autophagy related 13	protein coding gene	no	.	5.347	0.284	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
HES6_LS004	chr2:238239562|238239661:-	HES6	hes family bHLH transcription factor 6	protein coding gene	yes	ENST00000409002.7	0.522	0.521	0.883	0.527(5049)	0.246(173)	0.258(4481)	non tumor-specific	alt_3prime	yes
PMPCA_LS001	chr9:136410739|136411997:+	PMPCA	peptidase, mitochondrial processing subunit alpha	protein coding gene	no	ENST00000371717.7;ENST00000612553.4;ENST00000619192.4;ENST00000620412.4;ENST00000371720.5;ENST00000622209.4;ENST00000399219.7;ENST00000614402.4	43.724	28.694	49.139	0.99(9489)	0.996(699)	0.979(17020)	non tumor-specific	alt_5prime	yes
ELOVL1_LS020	chr1:43365621|43367915:-	ELOVL1	ELOVL fatty acid elongase 1	protein coding gene	no	.;.	16.856	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC009955.4_UP_LS0005	chr2:219543405|219544146:+	AC009955.4	-	lncRNA gene	no	.	1.227	0.269	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDPF1_LS015	chr22:46247221|46250256:-	CDPF1	cysteine rich DPF motif domain containing 1	protein coding gene	no	ENST00000474256.1	0.143	0.083	1.238	0.675(6466)	0.731(513)	0.64(11119)	non tumor-specific	exon_skip	yes
UN_NECTIN2_LS0096	chr19:44880867|44882211:+	NECTIN2	nectin cell adhesion molecule 2	protein coding gene	no	.	1.333	0.124	0.000	0.011(101)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CFAP45_LS013	chr1:159893305|159898066:-	CFAP45	cilia and flagella associated protein 45	protein coding gene	no	ENST00000426543.6;ENST00000479940.2	0.448	0.228	0.978	0.153(1470)	0.165(116)	0.051(879)	non tumor-specific	alt_3prime;exon_skip	yes
ANK3_LS083	chr10:60261957|60263835:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000280772.6;ENST00000373827.6;ENST00000503366.5;ENST00000622427.4;ENST00000503925.1	4.707	8.460	4.636	0.539(5162)	0.826(580)	0.84(14607)	non tumor-specific	exon_skip	yes
UN_PI4KAP1_LS0034	chr22:18548856|18552473:-	PI4KAP1	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudogene	no	.	3.647	0.526	0.000	0.025(240)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_AC062020.1_UP_LS0109	chr2:122540425|122544397:+	AC062020.1	-	lncRNA gene	no	.	2.909	1.773	0.000	0.012(119)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCAMP5_LS030	chr15:75017971|75018394:+	SCAMP5	secretory carrier membrane protein 5	protein coding gene	no	ENST00000562212.5;ENST00000567529.1	0.264	0.425	1.349	0.378(3618)	0.427(300)	0.21(3642)	non tumor-specific	alt_3prime	yes
SRPK1_LS012	chr6:35870959|35872563:-	SRPK1	SRSF protein kinase 1	protein coding gene	no	ENST00000373825.6;ENST00000361690.7;ENST00000346162.10;ENST00000423325.6	39.264	19.407	10.815	0.964(9236)	0.984(691)	0.974(16923)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NKTR_LS0029	chr3:42638906|42638988:+	NKTR	natural killer cell triggering receptor	protein coding gene	no	.	3.427	1.280	0.000	0.107(1029)	0.078(55)	0(0)	non tumor-specific	intron_retention	no
SLC47A1_LS028	chr17:19556062|19566790:+	SLC47A1	solute carrier family 47 member 1	protein coding gene	no	ENST00000497548.5	0.060	0.179	0.722	0.111(1065)	0.17(119)	0.094(1630)	non tumor-specific	exon_skip	yes
CLSTN1_LS007	chr1:9735174|9735467:-	CLSTN1	calsyntenin 1	protein coding gene	no	ENST00000377298.8;ENST00000650348.1;ENST00000435891.5;ENST00000361311.4	295.716	242.102	100.230	0.994(9523)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_LRWD1_LS0002	chr7:102465681|102465817:+	LRWD1	leucine rich repeats and WD repeat domain containing 1	protein coding gene	no	.	1.644	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
IL4I1_LS012	chr19:49901821|49904199:-	IL4I1	interleukin 4 induced 1	protein coding gene	no	ENST00000601717.5;ENST00000341114.7;ENST00000596022.5;ENST00000596011.1	0.033	0.000	0.695	0.006(58)	0(0)	0.025(432)	non tumor-specific	exon_skip	yes
UN_UBE3C_LS0017	chr7:157163863|157170304:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	2.945	0.375	0.000	0.012(118)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
ADAMTS7_LS012	chr15:78771829|78773083:-	ADAMTS7	ADAM metallopeptidase with thrombospondin type 1 motif 7	protein coding gene	no	ENST00000388820.4;ENST00000565793.5;ENST00000568712.1	7.054	1.945	5.225	0.7(6711)	0.524(368)	0.857(14896)	non tumor-specific	alt_5prime	yes
UN_LDLRAD3_LS0018	chr11:36038184|36081653:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	1.493	0.040	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
ANKRD36B_LS016	chr2:97540106|97540201:-	ANKRD36B	ankyrin repeat domain 36B	protein coding gene	no	ENST00000359901.8;ENST00000258459.11	2.360	0.710	2.868	0.144(1384)	0.124(87)	0.505(8772)	non tumor-specific	nAS	yes
FUZ_LS026	chr19:49811699|49812638:-	FUZ	fuzzy planar cell polarity protein	protein coding gene	no	ENST00000528094.5;ENST00000528094.5	0.075	0.111	0.887	0.144(1379)	0.172(121)	0.425(7386)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DDX60_LS007	chr4:168225676|168236252:-	DDX60	DExD/H-box helicase 60	protein coding gene	no	ENST00000393743.7;ENST00000511317.1	33.138	22.862	11.718	0.978(9367)	0.993(697)	0.97(16856)	non tumor-specific	nAS	yes
UN_STEAP1B_LS0188	chr7:22510936|22511075:+	STEAP1B	STEAP family member 1B	protein coding gene	no	.	52.882	9.376	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABCF2_LS0034	chr7:151222616|151223583:-	ABCF2	ATP binding cassette subfamily F member 2	protein coding gene	no	.	3.785	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
PAN2_LS001	chr12:56317643|56318237:-	PAN2	retinol dehydrogenase 14	protein coding gene	no	ENST00000425394.6;ENST00000610546.4;ENST00000551359.5;ENST00000440411.7;ENST00000257931.9;ENST00000547226.5;ENST00000548043.5;ENST00000553230.1;ENST00000549090.1	45.024	21.678	74.852	0.993(9511)	0.994(698)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_DNMT1_LS0010	chr19:10136287|10137076:-	DNMT1	DNA methyltransferase 1	protein coding gene	yes	.	8.808	3.112	0.000	0.374(3587)	0.234(164)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
EPS8_LS036	chr12:15682972|15789161:-	EPS8	epidermal growth factor receptor pathway substrate 8	protein coding gene	yes	ENST00000543468.5;ENST00000644374.1;ENST00000281172.9;ENST00000647224.1;ENST00000646123.1;ENST00000536956.5	10.151	7.897	17.666	0.856(8204)	0.919(645)	0.949(16488)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF462_LS019	chr9:106935621|106938916:+	ZNF462	zinc finger protein 462	protein coding gene	no	ENST00000277225.9;ENST00000374686.6;ENST00000441147.6;ENST00000471032.5;ENST00000479166.1	13.415	8.556	8.679	0.783(7506)	0.877(616)	0.918(15965)	non tumor-specific	exon_skip	yes
ZFAND1_LS019	chr8:81715114|81717249:-	ZFAND1	zinc finger AN1-type containing 1	protein coding gene	no	ENST00000523096.5;ENST00000220669.9;ENST00000519464.5;ENST00000519523.5;ENST00000521742.5;ENST00000518419.5;ENST00000517353.5;ENST00000519820.5	15.603	11.641	20.753	0.985(9438)	0.996(699)	0.973(16905)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC198_LS018	chr14:57491071|57493513:-	CCDC198	coiled-coil domain containing 198	protein coding gene	no	ENST00000534528.5;ENST00000529860.5	0.142	0.354	0.899	0.105(1003)	0.211(148)	0.026(447)	non tumor-specific	alt_3prime;alt_5prime	yes
OPHN1_LS005	chrX:68064177|68073152:-	OPHN1	oligophrenin 1	protein coding gene	no	ENST00000355520.5;ENST00000484842.1	4.610	3.112	4.413	0.607(5814)	0.801(562)	0.888(15434)	non tumor-specific	exon_skip	yes
GSDME_LS011	chr7:24719218|24724686:-	GSDME	gasdermin E	protein coding gene	no	ENST00000559637.6	0.045	0.011	0.603	0.419(4017)	0.481(338)	0.004(74)	non tumor-specific	intron_retention	yes
UN_C1orf53_LS0004	chr1:197903108|197905796:+	C1orf53	chromosome 1 open reading frame 53	protein coding gene	no	.	3.634	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime	no
CCND3_LS001	chr6:41936107|41936559:-	CCND3	cyclin D3	protein coding gene	no	ENST00000372991.8;ENST00000616010.4;ENST00000511642.5;ENST00000372987.8;ENST00000415497.6;ENST00000372988.8;ENST00000414200.6	195.468	133.545	128.448	0.961(9203)	0.962(675)	0.979(17021)	non tumor-specific	exon_skip	yes
CHKB_LS018	chr22:50582357|50582558:-	CHKB	choline kinase beta	protein coding gene	no	ENST00000406938.2;ENST00000481673.5	9.498	5.408	14.884	0.975(9339)	0.983(690)	0.976(16972)	non tumor-specific	intron_retention	yes
AC087627.1_LS002	chr8:74207493|74207721:+	AC087627.1	-	lncRNA gene	no	ENST00000522339.2	0.577	0.000	0.690	0.011(101)	0(0)	0.018(313)	non tumor-specific	nAS	yes
UN_FAM122C_LS0044	chrX:134837334|134838727:+	FAM122C	family with sequence similarity 122C	protein coding gene	no	.	1.800	0.249	0.000	0.041(396)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_OST4_LS0009	chr2:27070713|27071326:-	OST4	oligosaccharyltransferase complex subunit 4, non-catalytic	protein coding gene	no	.	146.263	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_TAPT1-AS1_LS0019	chr4:16252705|16256257:+	TAPT1-AS1	TAPT1 antisense RNA 1 (head to head)	lncRNA gene	no	.	1.756	0.212	0.000	0.007(65)	0.004(3)	0(0)	non tumor-specific	nAS	no
VNN3_LS011	chr6:132727012|132734253:-	VNN3	vanin 3	protein coding gene	no	ENST00000414302.6	0.526	0.157	0.939	0.05(482)	0.057(40)	0.044(773)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL390961.1_UP_LS0001	chr10:26638262|26638421:+	AL390961.1	-	lncRNA gene	no	.	4.602	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CARS_LS029	chr11:3029084|3029303:-	CARS	cysteinyl-tRNA synthetase 1	protein coding gene	no	ENST00000380525.8;ENST00000531387.5;ENST00000397111.9;ENST00000278224.13;ENST00000526890.5;ENST00000529772.5	46.506	27.311	47.692	0.992(9506)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
TSC22D3_LS005	chrX:107715950|107775100:-	TSC22D3	TSC22 domain family member 3	protein coding gene	no	ENST00000315660.8;ENST00000372383.8;ENST00000372384.6;ENST00000506081.5;ENST00000514426.1;ENST00000514897.5;ENST00000480691.2;ENST00000510887.5;ENST00000502650.1	9.731	12.023	31.832	0.955(9154)	0.984(691)	0.977(16974)	non tumor-specific	exon_skip	yes
ZNF878_LS001	chr19:12045209|12046368:-	ZNF878	zinc finger protein 878	protein coding gene	no	ENST00000547628.1	0.962	0.516	0.732	0.16(1532)	0.188(132)	0.134(2337)	non tumor-specific	nAS	yes
UN_G6PD_LS0045	chrX:154531984|154532031:+	G6PD	glucose-6-phosphate dehydrogenase	protein coding gene	no	.	1.193	0.310	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
ABCC1_LS040	chr16:16125911|16131789:+	ABCC1	ATP binding cassette subfamily C member 1	protein coding gene	no	ENST00000399410.7;ENST00000399408.6;ENST00000572882.2	59.269	29.030	21.289	0.976(9349)	0.97(681)	0.972(16892)	non tumor-specific	alt_5prime;exon_skip	yes
PRDM15_LS015	chr21:41823449|41825960:-	PRDM15	PR/SET domain 15	protein coding gene	yes	ENST00000447016.6;ENST00000422911.5;ENST00000441787.5;ENST00000449395.5;ENST00000398548.5;ENST00000433067.5;ENST00000447207.6;ENST00000269844.4	2.229	0.649	3.564	0.69(6613)	0.632(444)	0.913(15869)	non tumor-specific	exon_skip	yes
AC027117.1_LS001	chr8:17809005|17809597:+	AC027117.1	-	lncRNA gene	no	ENST00000520646.1	0.183	0.210	1.071	0.286(2738)	0.385(270)	0.342(5951)	non tumor-specific	nAS	yes
IL23R_LS012	chr1:67240281|67255837:+	IL23R	interleukin 23 receptor	protein coding gene	no	ENST00000637002.1;ENST00000347310.9;ENST00000425614.3	3.612	0.264	0.809	0.014(134)	0.02(14)	0.047(822)	non tumor-specific	exon_skip	yes
UN_AP003100.2_LS0008	chr11:112746916|112750244:+	AP003100.2	-	lncRNA gene	no	.	3.338	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRGAP1_LS0011	chr12:63990072|63997041:+	SRGAP1	SLIT-ROBO Rho GTPase activating protein 1	protein coding gene	no	.	9.176	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC125634.1_LS001	chr9:64884241|64884404:-	AC125634.1	-	pseudogene	no	ENST00000438758.1	1.887	0.000	0.700	0(1)	0(0)	0.005(83)	non tumor-specific	nAS	yes
UN_C1QTNF7_LS0002	chr4:15340207|15372165:+	C1QTNF7	C1q and TNF related 7	protein coding gene	no	.	1.931	1.837	0.000	0.023(221)	0.124(87)	0(0)	non tumor-specific	intron_retention	no
UN_RPL26P30_LS0012	chr11:2342077|2345403:+	RPL26P30	ribosomal protein L26 pseudogene 30	pseudogene	no	.	32.487	0.765	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AXIN1_LS0024	chr16:298251|299120:-	AXIN1	axin 1	protein coding gene	yes	.	0.768	0.124	0.000	0.006(53)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LINC01138_LS0010	chr1:148344381|148345510:-	LINC01138	long intergenic non-protein coding RNA 1138	lncRNA gene	no	.	1.162	0.063	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRSS38_LS001	chr1:227815864|227816090:+	PRSS38	serine protease 38	protein coding gene	no	ENST00000366757.3	6.312	0.000	0.611	0.003(27)	0(0)	0.001(26)	non tumor-specific	nAS	yes
DCXR_LS001	chr17:82035245|82036191:-	DCXR	dicarbonyl and L-xylulose reductase	protein coding gene	no	ENST00000577532.5	0.063	0.060	1.133	0.498(4768)	0.578(406)	0.501(8700)	non tumor-specific	alt_3prime	yes
COL6A1_LS025	chr21:45997483|45997700:+	COL6A1	collagen type VI alpha 1 chain	protein coding gene	no	ENST00000361866.7;ENST00000612273.1	221.524	120.081	297.310	0.985(9433)	0.997(700)	0.974(16937)	non tumor-specific	nAS	yes
PTPN2_LS026	chr18:12836891|12839502:-	PTPN2	protein tyrosine phosphatase non-receptor type 2	protein coding gene	yes	ENST00000643900.1	7.895	0.764	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime	yes
STK32C_LS006	chr10:132222986|132224407:-	STK32C	serine/threonine kinase 32C	protein coding gene	no	ENST00000462160.5;ENST00000368622.5;ENST00000298630.7	22.647	19.229	9.540	0.944(9046)	0.952(668)	0.975(16945)	non tumor-specific	exon_skip	yes
KDSR_LS010	chr18:63351079|63355219:-	KDSR	3-ketodihydrosphingosine reductase	protein coding gene	no	ENST00000592327.1	0.428	0.550	0.657	0.772(7401)	0.772(542)	0.085(1479)	non tumor-specific	alt_5prime	yes
GRIN2A_LS012	chr16:9834230|9840647:-	GRIN2A	glutamate ionotropic receptor NMDA type subunit 2A	protein coding gene	yes	ENST00000396573.6;ENST00000461292.3;ENST00000535259.5;ENST00000636273.1;ENST00000562109.5;ENST00000330684.3	2.584	2.703	1.317	0.112(1072)	0.08(56)	0.273(4748)	non tumor-specific	nAS	yes
TCP11_LS017	chr6:35129182|35141205:-	TCP11	t-complex 11	protein coding gene	no	ENST00000427376.6;ENST00000505335.1	0.266	0.036	0.677	0.035(340)	0.007(5)	0.024(418)	non tumor-specific	exon_skip	yes
UN_ZBTB34_LS0016	chr9:126874357|126879390:+	ZBTB34	zinc finger and BTB domain containing 34	protein coding gene	no	.	0.993	0.097	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SSNA1_LS0003	chr9:137188778|137189044:+	SSNA1	SS nuclear autoantigen 1	protein coding gene	no	.	10.429	1.036	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MYH7B_LS016	chr20:34986989|34987149:+	MYH7B	myosin heavy chain 7B	protein coding gene	no	ENST00000262873.11;ENST00000618182.4	8.597	0.936	1.711	0.038(365)	0.034(24)	0.564(9805)	non tumor-specific	intron_retention	yes
KCNAB2_LS009	chr1:6034794|6040517:+	KCNAB2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein coding gene	no	ENST00000164247.5	0.006	0.001	1.583	0.325(3111)	0.269(189)	0.063(1093)	non tumor-specific	alt_5prime	yes
CROT_LS020	chr7:87393067|87398524:+	CROT	carnitine O-octanoyltransferase	protein coding gene	yes	ENST00000419147.6;ENST00000331536.7	24.430	25.016	11.310	0.948(9079)	0.97(681)	0.966(16785)	non tumor-specific	exon_skip	yes
UN_KRT6C_UP_LS0013	chr12:52492684|52519134:-	KRT6C	keratin 6C	protein coding gene	no	.	3965.295	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC142_LS016	chr2:74481538|74481817:-	CCDC142	coiled-coil domain containing 142	protein coding gene	no	ENST00000454193.5;ENST00000393965.7;ENST00000290418.4;ENST00000471713.5	3.291	1.608	2.436	0.835(8002)	0.863(606)	0.871(15144)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CR589904.1_LS006	chr1:248697207|248716565:+	CR589904.1	-	pseudogene	no	ENST00000611154.3	4.073	0.000	0.756	0.002(19)	0(0)	0.009(161)	non tumor-specific	nAS	yes
ARFGAP2_LS026	chr11:47173482|47173759:-	ARFGAP2	ADP ribosylation factor GTPase activating protein 2	protein coding gene	no	ENST00000426335.6;ENST00000524782.5;ENST00000395449.7;ENST00000525398.5;ENST00000525314.5;ENST00000527097.5;ENST00000528444.5;ENST00000524727.5;ENST00000528041.5	63.675	53.063	61.295	0.992(9507)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IFT74_LS0027	chr9:27055185|27055609:+	IFT74	intraflagellar transport 74	protein coding gene	no	.	2.385	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL16_LS008	chr11:59809920|59810240:-	MRPL16	mitochondrial ribosomal protein L16	protein coding gene	no	ENST00000534340.1	2.703	2.627	2.103	0.832(7976)	0.868(609)	0.849(14763)	non tumor-specific	nAS	yes
UN_ZNF444_LS0003	chr19:56141179|56142276:+	ZNF444	zinc finger protein 444	protein coding gene	no	.	0.565	0.320	0.000	0.01(100)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
AJUBA_LS005	chr14:22975104|22976456:-	AJUBA	ajuba LIM protein	protein coding gene	no	ENST00000262713.6;ENST00000397388.7;ENST00000361265.8;ENST00000553592.5;ENST00000556731.5	26.757	18.942	7.603	0.937(8980)	0.972(682)	0.875(15205)	non tumor-specific	exon_skip	yes
UN_PPP2R2C_UP_LS0013	chr4:6642298|6659452:-	PPP2R2C	protein phosphatase 2 regulatory subunit Bgamma	protein coding gene	yes	.	3.437	0.113	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC034213.1_UP_LS0009	chr5:180292588|180295035:+	AC034213.1	-	lncRNA gene	no	.	2.237	0.106	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
TELO2_LS004	chr16:1493605|1494281:+	TELO2	telomere maintenance 2	protein coding gene	no	ENST00000497339.6;ENST00000497339.6	0.262	0.314	2.565	0.748(7169)	0.6(421)	0.902(15685)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KDELR3_LS0016	chr22:38474623|38479664:+	KDELR3	KDEL endoplasmic reticulum protein retention receptor 3	protein coding gene	no	.	4.145	0.450	0.000	0.014(136)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DCN_LS018	chr12:91178585|91180448:-	DCN	decorin	protein coding gene	yes	ENST00000549513.5	0.217	0.486	2.517	0.73(6991)	0.967(679)	0.641(11135)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RXRA_LS0031	chr9:134373180|134401632:+	RXRA	retinoid X receptor alpha	protein coding gene	no	.	2.124	0.645	0.000	0.012(117)	0.053(37)	0(0)	non tumor-specific	exon_skip	no
KCNJ16_LS019	chr17:70108381|70130879:+	KCNJ16	potassium inwardly rectifying channel subfamily J member 16	protein coding gene	no	ENST00000591891.5;ENST00000283936.5;ENST00000615244.4;ENST00000392670.5;ENST00000585558.5;ENST00000587892.1;ENST00000591891.5;ENST00000283936.5;ENST00000615244.4;ENST00000392670.5;ENST00000585558.5;ENST00000587892.1	4.344	7.993	2.122	0.243(2325)	0.422(296)	0.259(4505)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ANXA6_LS016	chr5:151122260|151139353:-	ANXA6	annexin A6	protein coding gene	no	ENST00000377751.9	0.089	0.118	0.582	0.701(6714)	0.848(595)	0.012(211)	non tumor-specific	nAS	yes
UN_FP671120.3_UP_LS0293	chr21:8216875|8260370:-	FP671120.3	-	lncRNA gene	no	.	75.199	130.441	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
PAWR_LS008	chr12:79596658|79597816:-	PAWR	pro-apoptotic WT1 regulator	protein coding gene	yes	ENST00000548075.5	1.763	1.012	3.492	0.132(1267)	0.088(62)	0.771(13409)	non tumor-specific	intron_retention	yes
UN_FRMD5_LS0003	chr15:43872820|43873171:-	FRMD5	FERM domain containing 5	protein coding gene	no	.	3.742	0.428	0.000	0.059(565)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
FKRP_LS002	chr19:46746090|46747234:+	FKRP	fukutin related protein	protein coding gene	no	ENST00000600977.5;ENST00000600872.5;ENST00000602250.5;ENST00000595868.5;ENST00000600629.5;ENST00000602181.5;ENST00000600005.5	0.103	0.107	0.906	0.523(5014)	0.661(464)	0.475(8260)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SERPINA12_LS0010	chr14:94498430|94516064:-	SERPINA12	serpin family A member 12	protein coding gene	no	.	3.041	0.671	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
KMT5C_LS001	chr19:55339957|55341794:+	KMT5C	lysine methyltransferase 5C	protein coding gene	no	ENST00000589338.5;ENST00000255613.7;ENST00000498738.1;ENST00000402499.6;ENST00000445196.5	3.089	1.558	6.792	0.947(9071)	0.925(649)	0.968(16832)	non tumor-specific	nAS	yes
WDYHV1_LS009	chr8:123436601|123437210:+	WDYHV1	N-terminal glutamine amidase 1	protein coding gene	no	ENST00000287387.6;ENST00000523984.5;ENST00000524254.5;ENST00000650311.1;ENST00000517609.5;ENST00000519199.5;ENST00000523551.1;ENST00000523356.1	24.030	11.768	18.545	0.993(9516)	0.996(699)	0.977(16975)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MIS12_LS0008	chr17:5487063|5487557:+	MIS12	MIS12 kinetochore complex component	protein coding gene	no	.	1.004	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
SEPT4_LS050	chr17:58526978|58532140:-	SEPT4	septin 4	protein coding gene	yes	ENST00000580740.1	0.007	0.003	1.555	0.076(728)	0.054(38)	0.107(1862)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAC1P8_UP_LS0003	chr13:61090920|61094020:+	RAC1P8	Rac family small GTPase 1 pseudogene 8	pseudogene	no	.	4.926	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
DBNL_LS039	chr7:44060153|44068547:+	DBNL	drebrin like	protein coding gene	no	.;.	7.079	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_YTHDF3_LS0001	chr8:63168762|63168839:+	YTHDF3	YTH N6-methyladenosine RNA binding protein 3	protein coding gene	no	.	4.372	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	intron_retention	no
FAM216B_LS002	chr13:42781664|42784060:+	FAM216B	family with sequence similarity 216 member B	protein coding gene	no	ENST00000537894.5	0.754	0.671	1.952	0.102(981)	0.187(131)	0.089(1549)	non tumor-specific	alt_3prime	yes
DDX50_LS029	chr10:68941111|68941117:+	DDX50	DExD-box helicase 50	protein coding gene	no	ENST00000610822.1	6.964	0.133	0.603	0.013(129)	0.006(4)	0.024(421)	non tumor-specific	nAS	yes
UN_HNRNPH1_LS0014	chr5:179617032|179617060:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	.	13.468	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
OGT_LS007	chrX:71544635|71546211:+	OGT	O-linked N-acetylglucosamine (GlcNAc) transferase	protein coding gene	no	ENST00000498566.3	0.176	0.100	0.662	0.242(2321)	0.192(135)	0.067(1167)	non tumor-specific	intron_retention	yes
UN_LINC01484_LS0004	chr5:173710268|173711846:-	LINC01484	long intergenic non-protein coding RNA 1484	lncRNA gene	no	.	4.102	0.701	0.000	0.006(54)	0.061(43)	0(0)	non tumor-specific	nAS	no
VRK1_LS007	chr14:96853166|96855224:+	VRK1	VRK serine/threonine kinase 1	protein coding gene	no	ENST00000216639.7;ENST00000557222.5	41.917	14.376	12.222	0.989(9480)	0.994(698)	0.977(16978)	non tumor-specific	nAS	yes
UN_CDCA4_LS0018	chr14:105011935|105021004:-	CDCA4	cell division cycle associated 4	protein coding gene	no	.	5.186	0.337	0.000	0.018(173)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_EXTL1_LS0009	chr1:26025187|26036397:-	EXTL1	exostosin like glycosyltransferase 1	protein coding gene	yes	.	2.717	0.531	0.000	0.02(187)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_HEATR5B_UP_LS0004	chr2:37091538|37107258:-	HEATR5B	HEAT repeat containing 5B	protein coding gene	no	.	1.384	0.170	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IGKV2D-10_UP_LS0040	chr2:90160232|90173310:+	IGKV2D-10	immunoglobulin kappa variable 2D-10 (pseudogene)	no	no	.	11.109	0.982	0.000	0.029(282)	0.001(1)	0(0)	non tumor-specific	nAS	no
MKKS_LS010	chr20:10420758|10434108:-	MKKS	McKusick-Kaufman syndrome	protein coding gene	no	ENST00000347364.7	72.101	38.534	52.429	0.961(9204)	0.956(671)	0.979(17019)	non tumor-specific	exon_skip	yes
CCDC144A_LS024	chr17:16735643|16761425:+	CCDC144A	coiled-coil domain containing 144A	protein coding gene	no	ENST00000399273.5;ENST00000360524.12;ENST00000470068.2	1.731	0.510	1.029	0.125(1193)	0.131(92)	0.309(5366)	non tumor-specific	exon_skip	yes
GABRA3_LS003	chrX:152168563|152189730:-	GABRA3	gamma-aminobutyric acid type A receptor subunit alpha3	protein coding gene	no	ENST00000370314.8;ENST00000535043.1	7.066	3.301	2.927	0.298(2853)	0.077(54)	0.188(3267)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BIRC2_LS0018	chr11:102360318|102362896:+	BIRC2	baculoviral IAP repeat containing 2	protein coding gene	yes	.	2.601	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF503-AS1_LS004	chr10:75295713|75296515:+	ZNF503-AS1	ZNF503 antisense RNA 1	lncRNA gene	no	ENST00000530606.1	0.581	0.218	0.667	0.006(58)	0.017(12)	0.052(905)	non tumor-specific	nAS	yes
ARID4B_LS031	chr1:235219968|235220302:-	ARID4B	AT-rich interaction domain 4B	protein coding gene	no	ENST00000366603.6;ENST00000349213.7;ENST00000264183.8;ENST00000421364.5;ENST00000491632.5;ENST00000471257.5;ENST00000418304.1	21.779	14.574	13.329	0.929(8896)	0.977(686)	0.974(16924)	non tumor-specific	nAS	yes
UN_MBTPS2_LS0008	chrX:21853503|21857849:+	MBTPS2	membrane bound transcription factor peptidase, site 2	protein coding gene	no	.	1.207	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC099344.3_UP_LS0002	chr2:11372705|11400372:+	AC099344.3	-	lncRNA gene	no	.	2.085	1.040	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
MCRS1_LS002	chr12:49558729|49558843:-	MCRS1	microspherule protein 1	protein coding gene	no	ENST00000546244.5;ENST00000548602.5;ENST00000551625.5;ENST00000343810.8;ENST00000550165.5;ENST00000552596.1;ENST00000548646.5;ENST00000547182.1;ENST00000357123.8	74.238	39.293	78.514	0.965(9241)	0.954(670)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_NPEPL1_LS0041	chr20:58712290|58712479:+	NPEPL1	aminopeptidase like 1	protein coding gene	no	.	5.956	0.184	0.000	0.013(129)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DLK1_LS0021	chr14:100732183|100733760:+	DLK1	delta like non-canonical Notch ligand 1	protein coding gene	yes	.	13.212	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TNFAIP2_LS0044	chr14:103130124|103130277:+	TNFAIP2	TNF alpha induced protein 2	protein coding gene	no	.	29.106	0.002	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ARFGEF2_LS0023	chr20:48973284|48976016:+	ARFGEF2	ADP ribosylation factor guanine nucleotide exchange factor 2	protein coding gene	no	.	2.553	0.051	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_LZTR1_LS0024	chr22:20997743|20998886:-	LZTR1	leucine zipper like transcription regulator 1	protein coding gene	no	.	1.021	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PSTK_LS0022	chr10:122990407|122992644:+	PSTK	phosphoseryl-tRNA kinase	protein coding gene	no	.	1.264	0.204	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_OPHN1_LS0013	chrX:68189670|68192919:-	OPHN1	oligophrenin 1	protein coding gene	no	.	1.440	0.122	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
CRAT37_LS002	chr15:91463631|91473221:+	CRAT37	-	lncRNA gene	no	ENST00000554333.1	0.575	0.035	0.666	0.006(61)	0.007(5)	0.011(184)	non tumor-specific	nAS	yes
UN_COL16A1_LS0091	chr1:31698172|31699813:-	COL16A1	collagen type XVI alpha 1 chain	protein coding gene	no	.	3.707	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CASC15_LS0131	chr6:22191656|22214307:+	CASC15	cancer susceptibility 15	lncRNA gene	no	.	2.908	0.575	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP8A1_LS031	chr4:42578387|42579813:-	ATP8A1	ATPase phospholipid transporting 8A1	protein coding gene	no	ENST00000381668.9;ENST00000264449.14	9.555	11.827	6.803	0.573(5490)	0.811(569)	0.939(16315)	non tumor-specific	alt_5prime;mutex_exons	yes
ITGAD_LS004	chr16:31397666|31397795:+	ITGAD	integrin subunit alpha D	protein coding gene	no	ENST00000389202.2;ENST00000444228.2	3.079	1.391	0.835	0.054(519)	0.034(24)	0.127(2213)	non tumor-specific	exon_skip	yes
UN_MGRN1_LS0007	chr16:4625048|4643994:+	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	3.247	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UBE2Q2_LS021	chr15:75883424|75899427:+	UBE2Q2	ubiquitin conjugating enzyme E2 Q2	protein coding gene	no	ENST00000426727.6	0.530	0.365	2.462	0.815(7813)	0.836(587)	0.834(14504)	non tumor-specific	exon_skip	yes
UN_NXF1_LS0007	chr11:62792344|62792464:+	NXF1	nuclear RNA export factor 1	protein coding gene	no	.	4.619	0.536	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WHAMMP2_LS0009	chr15:28747875|28749906:+	WHAMMP2	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2	pseudogene	no	.	1.451	0.254	0.000	0.013(126)	0.046(32)	0(0)	non tumor-specific	nAS	no
UN_AL161431.1_UP_LS0004	chr13:109265667|109267611:+	AL161431.1	-	lncRNA gene	no	.	7.928	0.132	0.000	0.028(267)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TWF1_LS0008	chr12:43799498|43800435:-	TWF1	twinfilin actin binding protein 1	protein coding gene	no	.	86.561	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCB1_LS012	chr22:23793688|23803295:+	SMARCB1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein coding gene	yes	ENST00000263121.12;ENST00000407082.4	0.666	0.446	0.691	0.761(7294)	0.667(468)	0.125(2165)	non tumor-specific	exon_skip;mutex_exons	yes
CNTD1_LS010	chr17:42805432|42805722:+	CNTD1	cyclin N-terminal domain containing 1	protein coding gene	no	ENST00000315066.5	0.647	0.611	0.965	0.093(892)	0.289(203)	0.031(546)	non tumor-specific	alt_3prime;alt_5prime	yes
CNTLN_LS013	chr9:17342444|17366617:+	CNTLN	centlein	protein coding gene	no	ENST00000380647.7	3.929	1.731	2.594	0.54(5175)	0.621(436)	0.836(14532)	non tumor-specific	exon_skip	yes
UN_MCOLN1_LS0008	chr19:7526608|7526761:+	MCOLN1	mucolipin 1	protein coding gene	no	.	4.084	1.622	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ABCA6_LS025	chr17:69105628|69106028:-	ABCA6	ATP binding cassette subfamily A member 6	protein coding gene	no	ENST00000284425.6;ENST00000590311.5	3.760	4.496	9.838	0.227(2176)	0.685(481)	0.862(14989)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_RPL23A_LS0014	chr17:28720890|28722699:+	RPL23A	ribosomal protein L23a	protein coding gene	no	.	324.158	7.911	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SMC2_LS003	chr9:104094448|104099644:+	SMC2	structural maintenance of chromosomes 2	protein coding gene	no	.;.	1.534	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
WDR59_LS040	chr16:74963247|74965773:-	WDR59	WD repeat domain 59	protein coding gene	no	ENST00000569421.2	0.063	0.037	0.956	0.396(3798)	0.427(300)	0.51(8858)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RBM27_LS0023	chr5:146271058|146287156:+	RBM27	RNA binding motif protein 27	protein coding gene	no	.	1.129	0.234	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02558_LS003	chr22:31972732|31973387:+	LINC02558	long intergenic non-protein coding RNA 2558	lncRNA gene	no	ENST00000436395.1	0.680	0.000	0.748	0.002(20)	0(0)	0.006(108)	non tumor-specific	nAS	yes
UN_CIITA_LS0055	chr16:10923325|10933178:+	CIITA	class II major histocompatibility complex transactivator	protein coding gene	no	.	5.038	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
COG2_LS008	chr1:230664587|230668676:+	COG2	component of oligomeric golgi complex 2	protein coding gene	no	ENST00000494371.5;ENST00000366669.8;ENST00000468893.6;ENST00000366668.7;ENST00000534989.1	22.199	14.434	15.126	0.971(9303)	0.987(693)	0.975(16949)	non tumor-specific	nAS	yes
UN_TMEM127_LS0098	chr2:96253896|96253968:+	TMEM127	transmembrane protein 127	protein coding gene	yes	.	2.228	1.070	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01238_LS0007	chr2:241973752|241974450:+	LINC01238	long intergenic non-protein coding RNA 1238	lncRNA gene	no	.	1.903	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
NLRX1_LS006	chr11:119168894|119171361:+	NLRX1	NLR family member X1	protein coding gene	no	.;.	1.877	0.196	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
MTOR_LS059	chr1:11258593|11259248:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	8.512	6.926	6.389	0.833(7984)	0.925(649)	0.944(16403)	non tumor-specific	nAS	yes
BTD_LS019	chr3:15635688|15641908:+	BTD	biotinidase	protein coding gene	no	ENST00000427382.2;ENST00000449107.6;ENST00000643237.1;ENST00000303498.10;ENST00000417015.2;ENST00000646371.1;ENST00000467027.6;ENST00000437172.5;ENST00000436193.5;ENST00000383778.5;ENST00000482824.2	25.152	26.870	14.755	0.995(9531)	0.997(700)	0.978(17003)	non tumor-specific	exon_skip	yes
SYVN1_LS038	chr11:65132780|65132922:-	SYVN1	synoviolin 1	protein coding gene	no	ENST00000294256.12;ENST00000377190.7;ENST00000449943.5;ENST00000526060.5;ENST00000531018.5;ENST00000532771.5;ENST00000527142.5;ENST00000528487.1;ENST00000525874.1;ENST00000533685.1	98.031	63.016	59.238	0.992(9507)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL355312.5_LS0008	chr6:149869885|149888539:-	AL355312.5	-	protein coding gene	no	.	2.140	0.818	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
PUM1_LS033	chr1:30981405|31006994:-	PUM1	pumilio RNA binding family member 1	protein coding gene	no	ENST00000526215.5	0.417	0.223	0.632	0.498(4767)	0.608(427)	0.047(824)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC00390_LS0006	chr13:44111892|44112025:+	LINC00390	long intergenic non-protein coding RNA 390	lncRNA gene	no	.	2.444	1.143	0.000	0.028(268)	0.057(40)	0(0)	non tumor-specific	nAS	no
UN_BRD2_LS0008	chr6:32969753|32971595:+	BRD2	bromodomain containing 2	protein coding gene	no	.	2.172	0.125	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
TAF1A_LS017	chr1:222579890|222584128:-	TAF1A	TATA-box binding protein associated factor, RNA polymerase I subunit A	protein coding gene	no	ENST00000465263.1	1.828	1.177	0.935	0.542(5193)	0.49(344)	0.474(8231)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GBE1_LS0011	chr3:81580086|81581165:-	GBE1	1,4-alpha-glucan branching enzyme 1	protein coding gene	no	.	2.223	0.134	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_COL11A2_UP_LS0010	chr6:33200440|33200767:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	.	1.061	0.344	0.000	0.017(166)	0.024(17)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
WAPL_LS020	chr10:86518091|86521365:-	WAPL	WAPL cohesin release factor	protein coding gene	yes	ENST00000298767.9;ENST00000618527.4;ENST00000263070.11	5.415	4.115	6.499	0.872(8353)	0.949(666)	0.949(16488)	non tumor-specific	exon_skip	yes
UN_ALS2CL_LS0060	chr3:46689465|46693218:-	ALS2CL	ALS2 C-terminal like	protein coding gene	no	.	1.446	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_CARD8_LS0013	chr19:48196041|48196204:+	CARD8	caspase recruitment domain family member 8	protein coding gene	no	.	1.519	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GJB6_LS012	chr13:20229749|20231382:-	GJB6	gap junction protein beta 6	protein coding gene	no	ENST00000644283.1;ENST00000400066.8;ENST00000644283.1;ENST00000400066.8	11.680	13.079	5.824	0.34(3262)	0.204(143)	0.32(5557)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01235_LS0010	chr9:13427261|13432400:-	LINC01235	long intergenic non-protein coding RNA 1235	lncRNA gene	no	.	2.699	0.574	0.000	0.006(57)	0.023(16)	0(0)	non tumor-specific	nAS	no
LRRK2_LS049	chr12:40323306|40328360:+	LRRK2	leucine rich repeat kinase 2	protein coding gene	no	ENST00000298910.11;ENST00000430804.5;ENST00000479187.5	12.996	15.743	7.147	0.598(5734)	0.919(645)	0.96(16685)	non tumor-specific	nAS	yes
UN_GOLGB1_LS0031	chr3:121692581|121702481:-	GOLGB1	golgin B1	protein coding gene	no	.	1.672	0.152	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SIPA1L1_LS0096	chr14:71709415|71709489:-	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	.	1.489	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BCOR_LS0037	chrX:40077969|40176972:-	BCOR	BCL6 corepressor	protein coding gene	no	.	0.630	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	alt_5prime	no
SSR2_LS012	chr1:156011887|156018132:-	SSR2	signal sequence receptor subunit 2	protein coding gene	no	ENST00000480176.5;ENST00000473699.5;ENST00000480176.5;ENST00000473699.5	1.204	1.561	4.440	0.987(9452)	0.979(687)	0.957(16631)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DHFR_LS001	chr5:80628938|80629039:-	DHFR	dihydrofolate reductase	protein coding gene	no	ENST00000505337.5	0.242	0.141	0.970	0.549(5262)	0.507(356)	0.472(8197)	non tumor-specific	alt_3prime;intron_retention	yes
UN_SF3B3_LS0020	chr16:70556640|70556886:+	SF3B3	splicing factor 3b subunit 3	protein coding gene	no	.	4.540	1.148	0.000	0.007(71)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
XRRA1_LS043	chr11:74937068|74948928:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	ENST00000321448.12;ENST00000531849.5;ENST00000534041.5;ENST00000534798.5	0.166	0.207	1.330	0.716(6861)	0.782(549)	0.674(11722)	non tumor-specific	alt_5prime;exon_skip	yes
C3_LS058	chr19:6718164|6718247:-	C3	complement C3	protein coding gene	no	ENST00000245907.10;ENST00000594936.1	174.867	278.908	50.221	0.925(8865)	0.981(689)	0.951(16529)	non tumor-specific	exon_skip	yes
AC112220.2_LS001	chr3:33798022|33798395:-	AC112220.2	-	no	no	ENST00000604982.2	0.630	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	yes
MTHFD1L_LS038	chr6:151037117|151041784:+	MTHFD1L	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein coding gene	no	ENST00000453602.1	0.034	0.003	0.648	0.351(3360)	0.171(120)	0.049(852)	non tumor-specific	nAS	yes
PMS2P7_LS001	chr7:73006174|73009444:+	PMS2P7	PMS1 homolog 2, mismatch repair system component pseudogene 7	pseudogene	no	ENST00000506558.2	0.874	0.584	0.899	0.971(9303)	0.987(693)	0.317(5512)	non tumor-specific	nAS	yes
UN_LSS_LS0052	chr21:46192765|46193117:+	LSS	lanosterol synthase	protein coding gene	no	.	7.055	0.721	0.000	0.015(144)	0.009(6)	0(0)	non tumor-specific	nAS	no
ARRB1_LS016	chr11:75287375|75290009:-	ARRB1	arrestin beta 1	protein coding gene	no	ENST00000420843.6;ENST00000360025.7;ENST00000532525.1;ENST00000533609.5;ENST00000527385.1;ENST00000533255.1	25.105	31.770	21.240	0.956(9157)	0.993(697)	0.976(16973)	non tumor-specific	exon_skip	yes
ASB2_LS001	chr14:93934792|93937698:-	ASB2	ankyrin repeat and SOCS box containing 2	protein coding gene	no	ENST00000555019.5;ENST00000315988.8;ENST00000553883.1	6.499	11.442	10.620	0.844(8082)	0.876(615)	0.897(15583)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TMEM189_LS0054	chr20:50130947|50143443:-	TMEM189	plasmanylethanolamine desaturase 1	protein coding gene	no	.	4.640	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
HSF4_LS048	chr16:67169348|67169636:+	HSF4	heat shock transcription factor 4	protein coding gene	no	ENST00000521916.1	0.048	0.070	2.074	0.468(4485)	0.537(377)	0.814(14155)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL671986.1_UP_LS0001	chr1:51330213|51346635:+	AL671986.1	-	pseudogene	no	.	3.068	0.695	0.000	0.011(110)	0.011(8)	0(0)	non tumor-specific	nAS	no
ASCC2_LS031	chr22:29825257|29838178:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000495967.5	0.018	0.026	1.216	0.312(2991)	0.415(291)	0.653(11346)	non tumor-specific	exon_skip	yes
DNAJC1_LS017	chr10:21929141|22003213:-	DNAJC1	DnaJ heat shock protein family (Hsp40) member C1	protein coding gene	no	ENST00000376980.7;ENST00000476103.3;ENST00000447548.5;ENST00000376946.2	10.094	7.682	20.706	0.974(9330)	0.981(689)	0.978(17004)	non tumor-specific	exon_skip	yes
UN_AL596325.1_UP_LS0002	chr1:162840007|163007365:-	AL596325.1	-	lncRNA gene	no	.	3.399	1.028	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
NCOR1_LS060	chr17:16153395|16158760:-	NCOR1	nuclear receptor corepressor 1	protein coding gene	no	ENST00000268712.7;ENST00000395857.7;ENST00000395851.5;ENST00000395848.5;ENST00000411510.5;ENST00000582357.5;ENST00000436828.5;ENST00000460276.5	16.801	13.230	12.872	0.918(8794)	0.986(692)	0.976(16959)	non tumor-specific	exon_skip	yes
IRAK1_LS006	chrX:154012678|154014042:-	IRAK1	interleukin 1 receptor associated kinase 1	protein coding gene	no	ENST00000455690.5	0.037	0.039	0.928	0.873(8360)	0.832(584)	0.429(7455)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PTPN3_LS0009	chr9:109383551|109384016:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	.	2.333	0.410	0.000	0.008(76)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
SPEF2_LS055	chr5:35807253|35814464:+	SPEF2	sperm flagellar 2	protein coding gene	no	ENST00000356031.7;ENST00000637061.1;ENST00000506526.5;ENST00000513078.1	4.906	1.275	1.369	0.145(1388)	0.215(151)	0.444(7710)	non tumor-specific	nAS	yes
CROCC_LS021	chr1:16939142|16944100:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000494191.6	0.265	0.166	0.680	0.229(2191)	0.177(124)	0.105(1822)	non tumor-specific	exon_skip	yes
UN_AC073878.1_UP_LS0001	chr7:141652883|141664172:-	AC073878.1	-	lncRNA gene	no	.	3.937	0.533	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ACSF3_LS0025	chr16:89116422|89120801:+	ACSF3	acyl-CoA synthetase family member 3	protein coding gene	no	.	1.701	0.045	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_RF00049_UP_LS0013	chr13:22453933|22566981:+	RF00049	-	small non-coding RNA gene	no	.	2.492	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VCX_UP_LS0020	chrX:7678528|7803301:+	VCX	variable charge X-linked	protein coding gene	no	.	1.837	0.175	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
MED25_LS009	chr19:49828547|49828970:+	MED25	mediator complex subunit 25	protein coding gene	no	ENST00000620467.4;ENST00000612854.4;ENST00000312865.10;ENST00000595185.5;ENST00000612791.4	111.395	61.133	49.829	0.994(9521)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TOPBP1_LS025	chr3:133649943|133652463:-	TOPBP1	DNA topoisomerase II binding protein 1	protein coding gene	no	ENST00000642236.1;ENST00000260810.9;ENST00000572787.1	9.397	5.004	7.414	0.891(8532)	0.937(658)	0.961(16696)	non tumor-specific	alt_5prime;exon_skip	yes
TRIM31-AS1_LS001	chr6:30105387|30107663:+	TRIM31-AS1	TRIM31 antisense RNA 1	lncRNA gene	no	ENST00000440874.1	4.081	0.625	0.940	0.061(587)	0.024(17)	0.271(4704)	non tumor-specific	nAS	yes
UN_ZNF681_LS0018	chr19:23754897|23755425:-	ZNF681	zinc finger protein 681	protein coding gene	no	.	1.905	0.151	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GLT8D2_LS0047	chr12:104053368|104063949:-	GLT8D2	glycosyltransferase 8 domain containing 2	protein coding gene	no	.	1.508	0.326	0.000	0.062(591)	0.017(12)	0(0)	non tumor-specific	alt_5prime	no
SPATA21_LS005	chr1:16399521|16400482:-	SPATA21	spermatogenesis associated 21	protein coding gene	no	ENST00000466212.5	1.178	0.072	0.869	0.002(21)	0.001(1)	0.011(184)	non tumor-specific	exon_skip	yes
DROSHA_LS018	chr5:31437298|31448547:-	DROSHA	drosha ribonuclease III	protein coding gene	no	ENST00000511367.6;ENST00000442743.5;ENST00000344624.7;ENST00000513349.5	56.752	28.320	37.077	0.976(9354)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
FCGR2A_LS019	chr1:161519660|161519802:+	FCGR2A	Fc fragment of IgG receptor IIa	protein coding gene	no	ENST00000491841.1	0.713	1.733	1.000	0.025(236)	0.007(5)	0.19(3301)	non tumor-specific	exon_skip;intron_retention	yes
ARHGAP45_LS008	chr19:1068744|1073149:+	ARHGAP45	Rho GTPase activating protein 45	protein coding gene	no	ENST00000539243.6;ENST00000587186.5;ENST00000313093.6;ENST00000590214.5;ENST00000586866.5	7.326	3.291	4.902	0.834(7992)	0.883(620)	0.88(15292)	non tumor-specific	alt_3prime;exon_skip	yes
ACER1_LS001	chr19:6306882|6307153:-	ACER1	alkaline ceramidase 1	protein coding gene	no	ENST00000301452.4	8.798	11.680	1.194	0.066(629)	0.125(88)	0.339(5890)	non tumor-specific	nAS	yes
UN_RPS2_LS0011	chr16:1962194|1962535:+	RPS2	ribosomal protein S2	protein coding gene	no	.	127.691	1.608	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
CPN1_LS003	chr10:100054446|100057013:-	CPN1	cytochrome P450 family 11 subfamily B member 1	protein coding gene	no	ENST00000370418.7;ENST00000441382.1	12.290	12.300	1.029	0.149(1425)	0.14(98)	0.036(619)	non tumor-specific	exon_skip	yes
COL6A6_LS001	chr3:130560428|130563068:+	COL6A6	collagen type VI alpha 6 chain	protein coding gene	no	ENST00000358511.10	2.999	0.835	1.256	0.045(432)	0.245(172)	0.138(2391)	non tumor-specific	nAS	yes
UN_AC244157.2_UP_LS0752	chr22:22919951|22922979:-	AC244157.2	-	pseudogene	no	.	0.629	0.537	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	nAS	no
PSG1_LS010	chr19:42878278|42879518:-	PSG1	pregnancy specific beta-1-glycoprotein 2	protein coding gene	no	ENST00000436291.6;ENST00000595124.5;ENST00000595356.5;ENST00000403380.7;ENST00000312439.10;ENST00000244296.6;ENST00000601456.5;ENST00000601073.1	0.595	0.000	0.867	0.044(423)	0.003(2)	0.032(564)	non tumor-specific	nAS	yes
STAU2_LS036	chr8:73697442|73709032:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000522061.5	0.019	0.039	0.795	0.173(1655)	0.231(162)	0.232(4036)	non tumor-specific	exon_skip	yes
C20orf194_LS034	chr20:3376302|3381379:-	C20orf194	chromosome 20 open reading frame 194	protein coding gene	no	ENST00000252032.9	6.744	6.596	6.688	0.722(6918)	0.859(603)	0.936(16268)	non tumor-specific	exon_skip	yes
CAMK1_LS019	chr3:9765890|9767667:-	CAMK1	calcium/calmodulin dependent protein kinase I	protein coding gene	no	ENST00000256460.7;ENST00000256460.7	20.317	25.184	32.700	0.961(9205)	0.996(699)	0.977(16987)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RASEF_UP_LS0014	chr9:83118259|83218882:-	RASEF	RAS and EF-hand domain containing	protein coding gene	no	.	2.089	0.918	0.000	0.022(207)	0.08(56)	0(0)	non tumor-specific	nAS	no
UN_ZNF761_LS0033	chr19:53439933|53441796:+	ZNF761	zinc finger protein 761	protein coding gene	no	.	3.244	1.248	0.000	0.089(856)	0.061(43)	0(0)	non tumor-specific	nAS	no
GGA3_LS027	chr17:75241057|75241400:-	GGA3	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein coding gene	no	ENST00000538886.5;ENST00000621870.4;ENST00000621217.4;ENST00000537686.5;ENST00000613421.4;ENST00000649398.1;ENST00000578348.5;ENST00000582486.5;ENST00000582717.5;ENST00000582232.1;ENST00000578896.1	34.004	18.457	34.449	0.984(9430)	0.994(698)	0.979(17015)	non tumor-specific	intron_retention	yes
UN_NR2E1_LS0004	chr6:108171292|108171458:+	NR2E1	nuclear receptor subfamily 2 group E member 1	protein coding gene	no	.	1.313	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
B4GALT3_LS008	chr1:161176095|161176434:-	B4GALT3	beta-1,4-galactosyltransferase 3	protein coding gene	no	ENST00000622395.4;ENST00000367998.5;ENST00000496313.5;ENST00000487004.5;ENST00000460415.1	8.736	5.352	12.544	0.987(9452)	0.996(699)	0.978(17007)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_FCAMR_LS0013	chr1:206970417|206970505:-	FCAMR	Fc fragment of IgA and IgM receptor	protein coding gene	no	.	0.452	0.002	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
TBL1XR1_LS029	chr3:177053918|177196340:-	TBL1XR1	TBL1X receptor 1	protein coding gene	no	ENST00000428970.5	0.010	0.003	0.629	0.478(4579)	0.548(385)	0.006(103)	non tumor-specific	exon_skip	yes
UN_SLC22A18_LS0050	chr11:2919407|2921464:+	SLC22A18	solute carrier family 22 member 18	protein coding gene	no	.	3.455	0.000	0.000	0.008(77)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CDC42BPB_LS036	chr14:102974149|102975684:-	CDC42BPB	CDC42 binding protein kinase beta	protein coding gene	no	ENST00000361246.6	54.856	47.304	39.785	0.962(9213)	0.99(695)	0.967(16801)	non tumor-specific	nAS	yes
NSUN5_LS016	chr7:73305097|73308431:-	NSUN5	NOP2/Sun RNA methyltransferase 5	protein coding gene	no	ENST00000455763.1;ENST00000455763.1	0.531	0.253	0.811	0.78(7474)	0.67(470)	0.317(5502)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PMEPA1_LS012	chr20:57700186|57709474:-	PMEPA1	prostate transmembrane protein, androgen induced 1	protein coding gene	no	ENST00000395819.3	0.624	0.181	0.652	0.186(1784)	0.101(71)	0.073(1271)	non tumor-specific	exon_skip	yes
AC079949.1_LS002	chr12:127145834|127145942:-	AC079949.1	-	lncRNA gene	no	ENST00000535022.1	0.419	0.219	0.854	0.236(2264)	0.316(222)	0.208(3624)	non tumor-specific	nAS	yes
UN_CENPB_LS0052	chr20:3784327|3784465:+	CENPB	centromere protein B	protein coding gene	no	.	3.591	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NUP160_LS0002	chr11:47783195|47784922:-	NUP160	nucleoporin 160	protein coding gene	no	.	5.892	2.351	0.000	0.15(1440)	0.145(102)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RNU7-164P_UP_LS0006	chrX:40585847|40612806:-	RNU7-164P	RNA, U7 small nuclear 164 pseudogene	small non-coding RNA gene	no	.	3.011	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MTSS1L_LS0051	chr16:70663400|70663424:+	MTSS1L	MTSS I-BAR domain containing 2	protein coding gene	no	.	12.322	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
SLC6A20_LS005	chr3:45763072|45765537:-	SLC6A20	solute carrier family 6 member 20	protein coding gene	no	ENST00000353278.8;ENST00000358525.8;ENST00000456124.6;ENST00000473146.5;ENST00000493980.1	6.018	2.703	1.454	0.386(3701)	0.501(352)	0.346(6008)	non tumor-specific	nAS	yes
UN_ZNF768_LS0061	chr16:30525730|30525815:+	ZNF768	zinc finger protein 768	protein coding gene	no	.	0.733	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GRN_LS0076	chr17:44351057|44351571:-	GRN	granulin precursor	protein coding gene	no	.	7.941	0.727	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_JDP2_UP_LS0005	chr14:75335978|75352084:+	JDP2	Jun dimerization protein 2	protein coding gene	yes	.	4.142	0.350	0.000	0.018(175)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_EPHX2_LS0010	chr8:27525473|27526072:+	EPHX2	epoxide hydrolase 2	protein coding gene	no	.	4.844	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CCDC60_LS011	chr12:119505303|119516623:+	CCDC60	coiled-coil domain containing 60	protein coding gene	no	ENST00000327554.2	4.326	4.067	1.383	0.077(742)	0.189(133)	0.114(1973)	non tumor-specific	nAS	yes
UN_USP13_UP_LS0001	chr3:179618521|179632662:+	USP13	ubiquitin specific peptidase 13	protein coding gene	no	.	16.884	1.065	0.000	0.018(168)	0.021(15)	0(0)	non tumor-specific	nAS	no
SLC12A8_LS019	chr3:125120686|125123530:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	ENST00000465475.5;ENST00000483944.5	1.671	0.787	1.051	0.251(2404)	0.084(59)	0.172(2998)	non tumor-specific	exon_skip	yes
ETNPPL_LS010	chr4:108754710|108756418:-	ETNPPL	ethanolamine-phosphate phospho-lyase	protein coding gene	no	ENST00000296486.7;ENST00000411864.6;ENST00000512646.5;ENST00000510706.5;ENST00000505233.5;ENST00000509402.1	11.927	15.646	6.124	0.176(1686)	0.313(220)	0.462(8022)	non tumor-specific	exon_skip	yes
ATM_LS047	chr11:108289801|108292619:+	ATM	ATM serine/threonine kinase	protein coding gene	yes	ENST00000278616.8;ENST00000452508.6;ENST00000524792.5	2.382	1.440	4.373	0.65(6228)	0.798(560)	0.889(15445)	non tumor-specific	exon_skip	yes
UN_ZKSCAN1_LS0048	chr7:100038869|100039187:-	ZKSCAN1	zinc finger with KRAB and SCAN domains 1	protein coding gene	no	.	11.044	2.507	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RAD51B_LS0186	chr14:68634225|68682937:+	RAD51B	RAD51 paralog B	protein coding gene	no	.	1.939	0.203	0.000	0.009(91)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KANSL3_LS0009	chr2:96595631|96600066:-	KANSL3	KAT8 regulatory NSL complex subunit 3	protein coding gene	no	.	3.119	0.028	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
OFD1_LS003	chrX:13735346|13736108:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	ENST00000485052.5	0.172	0.182	1.340	0.45(4309)	0.459(322)	0.576(10008)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
USP25_LS008	chr21:15778027|15791502:+	USP25	ubiquitin specific peptidase 25	protein coding gene	no	ENST00000285679.10;ENST00000351097.9;ENST00000285681.6;ENST00000400183.6;ENST00000547201.5;ENST00000549362.1	21.137	21.413	19.569	0.908(8698)	0.98(688)	0.976(16962)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC098613.1_LS0012	chr3:46387773|46406897:-	AC098613.1	-	lncRNA gene	no	.	3.588	0.402	0.000	0.014(137)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_DMBT1_LS0074	chr10:122581825|122586060:+	DMBT1	deleted in malignant brain tumors 1	protein coding gene	yes	.	7.463	8.898	0.000	0.025(235)	0.064(45)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AL138921.2_UP_LS0026	chr10:100103645|100105020:+	AL138921.2	-	lncRNA gene	no	.	3.629	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SMCHD1_LS017	chr18:2707645|2707807:+	SMCHD1	structural maintenance of chromosomes flexible hinge domain containing 1	protein coding gene	yes	ENST00000320876.10;ENST00000577880.5;ENST00000584897.5;ENST00000581711.1	8.489	6.141	7.992	0.819(7843)	0.919(645)	0.941(16360)	non tumor-specific	intron_retention	yes
UN_SIRPA_LS0087	chr20:1937978|1938012:-	SIRPA	signal regulatory protein alpha	protein coding gene	no	.	2.108	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TMPRSS11D_LS005	chr4:67825874|67835083:-	TMPRSS11D	transmembrane serine protease 11D	protein coding gene	no	ENST00000514868.1	0.369	0.112	0.807	0.096(921)	0.06(42)	0.02(352)	non tumor-specific	exon_skip	yes
UN_ZNF761_LS0147	chr19:53456012|53456685:-	ZNF761	zinc finger protein 761	protein coding gene	no	.	6.378	0.305	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
AIFM3_LS022	chr22:20976766|20976867:+	AIFM3	apoptosis inducing factor mitochondria associated 3	protein coding gene	no	ENST00000399167.6;ENST00000399163.6;ENST00000405089.5;ENST00000440238.3;ENST00000465606.5;ENST00000483107.5	5.156	10.373	2.474	0.425(4074)	0.215(151)	0.793(13786)	non tumor-specific	alt_5prime;exon_skip	yes
NCF1_LS005	chr7:74777347|74779082:+	NCF1	neutrophil cytosolic factor 1	protein coding gene	no	ENST00000289473.8;ENST00000449343.6;ENST00000438106.5;ENST00000433458.5	8.953	4.434	1.673	0.888(8510)	0.925(649)	0.606(10530)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC008109.1_LS0013	chr18:1612631|1614265:-	AC008109.1	-	lncRNA gene	no	.	6.738	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PARD3B_LS0018	chr2:204686282|204914451:+	PARD3B	par-3 family cell polarity regulator beta	protein coding gene	no	.	4.838	0.141	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TPCN1_LS015	chr12:113226964|113260368:+	TPCN1	two pore segment channel 1	protein coding gene	no	ENST00000547275.5;ENST00000552985.5;ENST00000550873.5;ENST00000551096.5;ENST00000335509.10;ENST00000550785.5;ENST00000552077.5;ENST00000541517.5	11.938	11.269	19.645	0.927(8878)	0.977(686)	0.973(16910)	non tumor-specific	exon_skip	yes
UN_ZYX_LS0010	chr7:143381684|143382315:-	ZYX	zyxin	protein coding gene	yes	.	5.498	1.842	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PALM2-AKAP2_LS0017	chr9:110025033|110025142:-	PALM2-AKAP2	PALM2 and AKAP2 fusion	protein coding gene	no	.	19.000	1.157	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTPRD_LS027	chr9:8471085|8484119:-	PTPRD	protein tyrosine phosphatase receptor type D	protein coding gene	yes	ENST00000381196.8;ENST00000355233.9;ENST00000397617.7;ENST00000537002.5;ENST00000397611.7;ENST00000356435.9;ENST00000540109.5;ENST00000486161.5;ENST00000397606.7;ENST00000637354.1	5.279	4.838	2.958	0.388(3718)	0.585(411)	0.752(13072)	non tumor-specific	nAS	yes
NEDD4_LS008	chr15:55838180|55838509:-	NEDD4	NEDD4 E3 ubiquitin protein ligase	protein coding gene	yes	ENST00000508871.5;ENST00000503468.5;ENST00000338963.6;ENST00000508342.5;ENST00000435532.7;ENST00000648451.1;ENST00000506154.1	10.014	6.747	8.187	0.851(8158)	0.96(674)	0.936(16261)	non tumor-specific	exon_skip	yes
MTA3_LS036	chr2:42698494|42704197:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	ENST00000472767.5;ENST00000472767.5	0.677	0.241	1.089	0.421(4032)	0.301(211)	0.569(9885)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_IREB2_UP_LS0002	chr15:78375394|78391261:+	IREB2	iron responsive element binding protein 2	protein coding gene	no	.	1.853	0.330	0.000	0.017(163)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_PRUNE2_LS0031	chr9:76769690|76823632:-	PRUNE2	prune homolog 2 with BCH domain	protein coding gene	no	.	3.006	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CFP_LS010	chrX:47629645|47629769:-	CFP	complement factor properdin	protein coding gene	no	ENST00000469388.1	1.722	2.113	0.907	0.091(868)	0.162(114)	0.237(4128)	non tumor-specific	alt_3prime	yes
UN_OCA2_LS0060	chr15:28081895|28082927:-	OCA2	OCA2 melanosomal transmembrane protein	protein coding gene	no	.	1.275	0.078	0.000	0.011(106)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HSD17B10_UP_LS0001	chrX:53434517|53440188:-	HSD17B10	hydroxysteroid 17-beta dehydrogenase 10	protein coding gene	no	.	1.346	3.435	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRIM28_LS0113	chr19:58549240|58549334:+	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	95.804	34.418	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
P4HA2_LS032	chr5:132218668|132227086:-	P4HA2	prolyl 4-hydroxylase subunit alpha 2	protein coding gene	no	ENST00000418055.5	0.071	0.007	0.557	0.064(617)	0.024(17)	0.018(307)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC018521.4_LS0001	chr17:47980682|47989779:-	AC018521.4	-	lncRNA gene	no	.	1.659	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01135_LS0017	chr1:58815000|58815268:+	LINC01135	long intergenic non-protein coding RNA 1135	lncRNA gene	no	.	1.413	0.425	0.000	0.017(166)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_ETFA_LS0026	chr15:76286463|76287846:-	ETFA	electron transfer flavoprotein subunit alpha	protein coding gene	no	.	44.559	6.192	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ARFGAP3_LS0007	chr22:42810944|42816414:-	ARFGAP3	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	.	3.321	0.754	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
LINC00316_LS001	chr21:45338878|45341825:-	LINC00316	long intergenic non-protein coding RNA 316	lncRNA gene	no	ENST00000416722.1	0.456	0.105	0.724	0.061(582)	0.046(32)	0.051(879)	non tumor-specific	nAS	yes
UN_VPS13B_LS0187	chr8:99868465|99870664:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	.	1.844	0.190	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NKAP_LS0017	chrX:119938810|119943193:-	NKAP	NFKB activating protein	protein coding gene	no	.	1.782	0.007	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
AURKC_LS008	chr19:57232685|57233460:+	AURKC	aurora kinase C	protein coding gene	no	ENST00000601799.5;ENST00000596375.1	0.636	0.261	1.023	0.177(1696)	0.134(94)	0.497(8636)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TNNI1_LS0009	chr1:201411539|201412685:+	TNNI1	troponin I1, slow skeletal type	protein coding gene	no	.	2.073	0.397	0.000	0.044(419)	0.013(9)	0(0)	non tumor-specific	nAS	no
IFNL1_LS001	chr19:39296592|39296805:+	IFNL1	interferon lambda 1	protein coding gene	no	ENST00000333625.2	1.540	0.000	0.642	0.068(655)	0(0)	0.004(62)	non tumor-specific	nAS	yes
UN_AC002347.1_UP_LS0006	chr17:10679027|10699607:-	AC002347.1	-	lncRNA gene	no	.	1.521	0.288	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
PLPP4_LS005	chr10:120514001|120518833:+	PLPP4	phospholipid phosphatase 4	protein coding gene	no	ENST00000398250.5;ENST00000427079.5;ENST00000369073.3	9.958	4.805	2.178	0.576(5516)	0.365(256)	0.471(8184)	non tumor-specific	exon_skip;mutex_exons	yes
UN_C21orf58_LS0026	chr21:46319895|46321146:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.	2.292	0.065	0.000	0.017(164)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_EXOC1_LS0017	chr4:55878066|55880461:+	EXOC1	exocyst complex component 1	protein coding gene	no	.	2.956	0.088	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
FAM98C_LS011	chr19:38405421|38405519:+	FAM98C	family with sequence similarity 98 member C	protein coding gene	no	ENST00000252530.9;ENST00000588348.5;ENST00000586372.5;ENST00000592992.1	35.642	24.500	39.898	0.994(9528)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRMT2A_LS024	chr22:20116612|20116883:-	TRMT2A	tRNA methyltransferase 2 homolog A	protein coding gene	no	ENST00000252136.11;ENST00000403707.7;ENST00000404751.7;ENST00000439169.2;ENST00000494641.1;ENST00000464535.1	15.403	7.616	30.069	0.988(9469)	0.997(700)	0.979(17016)	non tumor-specific	alt_5prime	yes
UN_ZNF616_LS0018	chr19:52115495|52115664:-	ZNF616	zinc finger protein 616	protein coding gene	no	.	1.714	0.230	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
EIF3H_LS009	chr8:116658980|116689069:-	EIF3H	eukaryotic translation initiation factor 3 subunit H	protein coding gene	no	ENST00000522453.1	0.214	0.062	0.762	0.406(3889)	0.363(255)	0.336(5832)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AL132994.2_UP_LS0003	chr14:39016850|39017525:-	AL132994.2	-	pseudogene	no	.	2.725	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AL133410.1_LS002	chr9:35772376|35786647:+	AL133410.1	-	lncRNA gene	no	ENST00000431981.2	0.426	0.185	0.934	0.225(2156)	0.214(150)	0.246(4275)	non tumor-specific	nAS	yes
IGSF3_LS002	chr1:116579877|116584645:-	IGSF3	immunoglobulin superfamily member 3	protein coding gene	no	ENST00000369483.5;ENST00000369486.7;ENST00000318837.6	32.375	18.655	3.724	0.93(8912)	0.905(635)	0.77(13389)	non tumor-specific	alt_3prime	yes
UN_AC009093.3_LS0032	chr16:29102131|29107355:-	AC009093.3	-	pseudogene	no	.	3.375	0.739	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PDE4DIP_LS0030	chr1:148937864|148941706:+	PDE4DIP	phosphodiesterase 4D interacting protein	protein coding gene	no	.	1.594	0.301	0.000	0.005(50)	0.02(14)	0(0)	non tumor-specific	nAS	no
CBWD1_LS015	chr9:146158|151305:-	CBWD1	COBW domain containing 1	protein coding gene	no	ENST00000612045.4;ENST00000495302.5	0.066	0.059	1.393	0.542(5193)	0.528(371)	0.704(12235)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
NUDCD2_LS003	chr5:163457080|163457562:-	NUDCD2	NudC domain containing 2	protein coding gene	no	ENST00000302764.8;ENST00000519395.5;ENST00000521797.1	106.085	55.542	53.637	0.997(9556)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
OGFOD3_LS013	chr17:82394543|82398196:-	OGFOD3	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein coding gene	no	ENST00000329197.9;ENST00000580445.5	12.108	8.170	13.116	0.99(9481)	0.997(700)	0.975(16956)	non tumor-specific	exon_skip;mutex_exons	yes
CCNB2_LS014	chr15:59123627|59124767:+	CCNB2	cyclin B2	protein coding gene	yes	ENST00000288207.6;ENST00000559622.5	75.495	7.230	2.674	0.915(8767)	0.682(479)	0.672(11688)	non tumor-specific	alt_5prime;intron_retention	yes
MTSS1L_LS004	chr16:70665096|70666340:-	MTSS1L	MTSS I-BAR domain containing 2	protein coding gene	no	.;.	1.385	0.379	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
LRRC7_LS025	chr1:70036624|70038113:+	LRRC7	leucine rich repeat containing 7	protein coding gene	no	ENST00000310961.9;ENST00000035383.9	3.048	1.036	1.644	0.032(306)	0.04(28)	0.303(5269)	non tumor-specific	nAS	yes
UN_AP000911.3_LS0001	chr11:134027279|134027683:+	AP000911.3	-	lncRNA gene	no	.	2.500	0.857	0.000	0.008(81)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC012593.1_UP_LS0012	chr2:34722121|34790216:+	AC012593.1	-	lncRNA gene	no	.	9.868	1.041	0.000	0.023(217)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CDH23_LS0087	chr10:71760924|71773358:-	CDH23	cadherin related 23	protein coding gene	no	.	3.473	0.853	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_NEDD4L_LS0004	chr18:58045329|58165788:+	NEDD4L	NEDD4 like E3 ubiquitin protein ligase	protein coding gene	yes	.	3.177	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_HLA-DPB1_LS0027	chr6:33084043|33084950:+	HLA-DPB1	major histocompatibility complex, class II, DP beta 1	protein coding gene	no	.	17.304	8.647	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
NUP214_LS044	chr9:131195294|131197216:+	NUP214	nucleoporin 214	protein coding gene	yes	ENST00000359428.9;ENST00000411637.6;ENST00000451030.5;ENST00000531929.5;ENST00000453861.6;ENST00000470765.5;ENST00000483497.6;ENST00000528114.1	38.810	24.242	20.798	0.979(9379)	0.99(695)	0.978(17008)	non tumor-specific	exon_skip;mutex_exons	yes
RCN2_LS006	chr15:76935722|76943758:+	RCN2	reticulocalbin 2	protein coding gene	no	ENST00000394885.7	90.447	44.822	70.736	0.994(9523)	0.996(699)	0.978(16992)	non tumor-specific	alt_3prime;exon_skip	yes
PATJ_LS043	chr1:62084648|62114053:+	PATJ	PATJ crumbs cell polarity complex component	protein coding gene	no	ENST00000459752.5	0.069	0.061	0.817	0.503(4822)	0.677(475)	0.214(3726)	non tumor-specific	exon_skip	yes
MIR137HG_LS008	chr1:98045077|98046008:-	MIR137HG	MIR137 host gene	lncRNA gene	no	ENST00000602852.1	0.089	0.003	0.635	0.032(308)	0.004(3)	0.025(441)	non tumor-specific	nAS	yes
UN_AL512506.3_LS0032	chr13:43969624|43969700:-	AL512506.3	-	protein coding gene	no	.	3.620	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RTTN_LS0027	chr18:70075541|70075960:-	RTTN	rotatin	protein coding gene	no	.	0.958	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF468_LS0002	chr19:52839706|52880808:+	ZNF468	zinc finger protein 468	protein coding gene	no	.	1.754	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ADRA1A_LS004	chr8:26756779|26859032:-	ADRA1A	adrenoceptor alpha 1D	protein coding gene	no	ENST00000521711.5	0.085	0.029	0.556	0.013(129)	0.057(40)	0.002(35)	non tumor-specific	nAS	yes
UN_SEZ6L_LS0015	chr22:26313902|26340427:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	.	23.550	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PPDPF_LS0089	chr20:63521995|63522078:-	PPDPF	pancreatic progenitor cell differentiation and proliferation factor	protein coding gene	no	.	1.658	0.044	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GGA3_LS0019	chr17:75237854|75237982:-	GGA3	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein coding gene	no	.	10.433	2.551	0.000	0.115(1106)	0.088(62)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TBC1D3L_LS006	chr17:37981650|37982364:-	TBC1D3L	TBC1 domain family member 3L	protein coding gene	no	ENST00000612727.4;ENST00000617678.2	0.985	0.371	0.693	0.81(7761)	0.765(537)	0.002(38)	non tumor-specific	nAS	yes
UN_AC007547.1_UP_LS0023	chr3:182232302|182234096:-	AC007547.1	-	pseudogene	no	.	5.556	0.117	0.000	0.025(236)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM50A_LS005	chr1:25340579|25351626:+	TMEM50A	transmembrane protein 50A	protein coding gene	no	ENST00000498135.5	2.129	3.184	3.685	0.944(9049)	0.93(653)	0.932(16202)	non tumor-specific	exon_skip;mutex_exons	yes
LINC01347_LS005	chr1:243066241|243067091:-	LINC01347	long intergenic non-protein coding RNA 1347	pseudogene	no	ENST00000627498.2	1.655	0.716	0.715	0.176(1682)	0.172(121)	0.177(3085)	non tumor-specific	nAS	yes
UN_NFKBIA_LS0008	chr14:35402481|35402530:+	NFKBIA	NFKB inhibitor alpha	protein coding gene	no	.	5.490	0.885	0.000	0.004(37)	0.009(6)	0(0)	non tumor-specific	nAS	no
E2F4_LS015	chr16:67194980|67195782:+	E2F4	E2F transcription factor 4	protein coding gene	no	ENST00000379378.7;ENST00000567007.5;ENST00000568839.5;ENST00000569573.1;ENST00000565226.1;ENST00000379378.7;ENST00000567007.5;ENST00000568839.5;ENST00000569573.1;ENST00000565226.1	56.362	30.359	78.588	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TH2LCRR_LS001	chr5:132630891|132638158:-	TH2LCRR	T helper type 2 locus control region associated RNA	lncRNA gene	no	ENST00000457489.1	0.995	0.119	1.012	0.028(267)	0.021(15)	0.152(2641)	non tumor-specific	nAS	yes
UN_AL603840.1_LS0054	chr1:55858069|55961074:+	AL603840.1	-	lncRNA gene	no	.	3.010	3.127	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ARGLU1_LS0017	chr13:106567947|106567980:-	ARGLU1	arginine and glutamate rich 1	protein coding gene	no	.	7.731	2.782	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_IGKV5-2_UP_LS0035	chr2:88884103|88885481:+	IGKV5-2	immunoglobulin kappa variable 5-2	no	no	.	1.091	0.147	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C2orf42_LS0022	chr2:70189502|70200504:+	C2orf42	chromosome 2 open reading frame 42	protein coding gene	no	.	2.049	0.713	0.000	0.022(210)	0.006(4)	0(0)	non tumor-specific	nAS	no
ERCC6L2_LS016	chr9:95923379|95928079:+	ERCC6L2	ERCC excision repair 6 like 2	protein coding gene	no	ENST00000288985.11;ENST00000466840.5;ENST00000456993.5;ENST00000426805.1	5.191	4.255	4.697	0.835(8001)	0.929(652)	0.938(16305)	non tumor-specific	mutex_exons	yes
UN_CSAG4_LS0003	chrX:152733859|152740251:+	CSAG4	CSAG family member 4 (pseudogene)	pseudogene	no	.	0.675	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC011523.1_LS0007	chr19:50844811|50846719:+	AC011523.1	-	lncRNA gene	no	.	4.813	2.752	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PSME4_LS0029	chr2:53887969|53888721:-	PSME4	proteasome activator subunit 4	protein coding gene	no	.	8.947	1.392	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_DENND6A-DT_UP_LS0001	chr3:57559388|57654624:+	DENND6A-DT	DENND6A divergent transcript	lncRNA gene	no	.	2.875	0.476	0.000	0.015(141)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_GMPS_LS0029	chr3:155940709|155941308:+	GMPS	guanine monophosphate synthase	protein coding gene	no	.	3.009	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TSEN54_LS004	chr17:75516616|75516746:+	TSEN54	tRNA splicing endonuclease subunit 54	protein coding gene	no	ENST00000333213.10;ENST00000583454.1;ENST00000580013.5	1.903	0.792	9.396	0.722(6914)	0.615(432)	0.959(16662)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NUP188_LS046	chr9:129005530|129005645:+	NUP188	nucleoporin 188	protein coding gene	no	ENST00000372577.2	103.528	37.730	57.387	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_MED13_LS0026	chr17:62011233|62022885:-	MED13	mediator complex subunit 13	protein coding gene	no	.	2.716	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DOCK11_LS016	chrX:118585117|118588137:+	DOCK11	dedicator of cytokinesis 11	protein coding gene	no	ENST00000276204.10;ENST00000276202.8;ENST00000633080.1	9.982	5.364	6.575	0.623(5965)	0.799(561)	0.864(15026)	non tumor-specific	nAS	yes
VPS13A_LS036	chr9:77295846|77302915:+	VPS13A	vacuolar protein sorting 13 homolog A	protein coding gene	no	ENST00000376634.8;ENST00000376636.7;ENST00000360280.7;ENST00000357409.9;ENST00000645632.1;ENST00000643348.1;ENST00000644843.1;ENST00000423463.6;ENST00000493341.1	5.526	3.886	7.975	0.631(6049)	0.809(568)	0.88(15292)	non tumor-specific	exon_skip	yes
CLASP2_LS052	chr3:33627080|33632292:-	CLASP2	cytoplasmic linker associated protein 2	protein coding gene	no	ENST00000468888.6;ENST00000399362.8;ENST00000359576.9;ENST00000480013.5;ENST00000461133.7;ENST00000635664.1;ENST00000313350.10;ENST00000487200.5;ENST00000333778.10;ENST00000485378.6;ENST00000496954.2;ENST00000476433.5;ENST00000482896.5;ENST00000498331.1	12.271	10.376	11.248	0.832(7970)	0.936(657)	0.961(16710)	non tumor-specific	nAS	yes
UN_ASRGL1_LS0016	chr11:62391632|62391795:+	ASRGL1	asparaginase and isoaspartyl peptidase 1	protein coding gene	no	.	1.553	0.012	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SCGB1B2P_LS0001	chr19:34577028|34577266:-	SCGB1B2P	secretoglobin family 1B member 2, pseudogene	lncRNA gene	no	.	1.661	0.006	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC078881.1_LS0001	chr4:177445443|177464324:+	AC078881.1	-	lncRNA gene	no	.	3.990	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DIP2A_LS0078	chr21:46563558|46563705:+	DIP2A	disco interacting protein 2 homolog A	protein coding gene	no	.	3.804	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_WDR47_LS0034	chr1:109023521|109041230:-	WDR47	WD repeat domain 47	protein coding gene	no	.	0.793	0.143	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
FETUB_LS011	chr3:186640685|186644751:+	FETUB	fetuin B	protein coding gene	no	ENST00000488561.1;ENST00000488561.1	0.214	0.120	0.797	0.038(367)	0.053(37)	0.047(809)	non tumor-specific	alt_5prime;exon_skip	yes
JPX_LS018	chrX:74062148|74069169:+	JPX	JPX transcript, XIST activator	lncRNA gene	no	ENST00000602772.5	0.064	0.060	0.814	0.148(1422)	0.201(141)	0.291(5065)	non tumor-specific	nAS	yes
UN_AL592429.2_LS0031	chr6:139583439|139606259:+	AL592429.2	-	lncRNA gene	no	.	2.518	0.464	0.000	0.005(49)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ABL1_LS0063	chr9:130884381|130884447:-	ABL1	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein coding gene	yes	.	1.690	0.391	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC104532.1_LS0005	chr19:5905120|5914385:+	AC104532.1	-	protein coding gene	no	.	1.118	0.080	0.000	0.014(130)	0.004(3)	0(0)	non tumor-specific	nAS	no
TMC4_LS007	chr19:54161260|54162102:-	TMC4	transmembrane channel like 4	protein coding gene	no	ENST00000613723.4;ENST00000619895.4;ENST00000617472.4	116.354	94.448	6.337	0.814(7800)	0.947(665)	0.918(15959)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC068790.8_LS0048	chr12:124012783|124012868:-	AC068790.8	-	protein coding gene	no	.	2.637	0.259	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDFY4_LS061	chr10:48976979|48978309:+	WDFY4	WDFY family member 4	protein coding gene	no	ENST00000325239.11;ENST00000465910.5	13.459	5.691	4.582	0.675(6464)	0.674(473)	0.901(15656)	non tumor-specific	alt_5prime	yes
UN_TMEM250_LS0054	chr9:136117024|136117669:-	TMEM250	transmembrane protein 250	protein coding gene	no	.	0.743	0.032	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
C8orf37_LS005	chr8:95263774|95269035:-	C8orf37	chromosome 8 open reading frame 37	protein coding gene	no	ENST00000286688.5	4.049	2.514	1.401	0.686(6573)	0.775(544)	0.683(11871)	non tumor-specific	nAS	yes
SLC25A26_LS021	chr3:66371413|66377690:+	SLC25A26	solute carrier family 25 member 26	protein coding gene	no	ENST00000413054.5	0.213	0.140	0.776	0.419(4010)	0.519(364)	0.344(5979)	non tumor-specific	exon_skip	yes
VPS37B_LS009	chr12:122871061|122888520:-	VPS37B	VPS37B subunit of ESCRT-I	protein coding gene	no	ENST00000371248.3	0.160	0.181	0.701	0.633(6066)	0.756(531)	0.067(1161)	non tumor-specific	alt_5prime;exon_skip	yes
OTUB2_LS001	chr14:94026540|94037380:+	OTUB2	OTU deubiquitinase, ubiquitin aldehyde binding 2	protein coding gene	no	ENST00000203664.9;ENST00000553723.1	1.096	0.580	1.148	0.687(6585)	0.577(405)	0.41(7123)	non tumor-specific	nAS	yes
AC142086.6_LS013	chr16:32939393|32945665:+	AC142086.6	-	pseudogene	no	ENST00000621154.1	3.850	1.288	0.700	0.116(1112)	0.111(78)	0.152(2645)	non tumor-specific	nAS	yes
UN_B4GALNT4_LS0004	chr11:371674|372109:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	.	2.442	0.215	0.000	0.073(702)	0.017(12)	0(0)	non tumor-specific	exon_skip;intron_retention	no
CCDC142_LS008	chr2:74480882|74480956:-	CCDC142	coiled-coil domain containing 142	protein coding gene	no	ENST00000454193.5;ENST00000393965.7;ENST00000290418.4;ENST00000497232.5;ENST00000471713.5;ENST00000474681.1	4.648	2.144	4.317	0.926(8869)	0.936(657)	0.95(16510)	non tumor-specific	alt_3prime;intron_retention	yes
SELENOK_LS005	chr3:53888483|53890926:-	SELENOK	selenoprotein K	protein coding gene	no	ENST00000485414.1	0.015	0.004	0.742	0.677(6488)	0.689(484)	0.191(3314)	non tumor-specific	exon_skip	yes
AC087164.1_LS002	chr17:18178365|18184397:-	AC087164.1	-	lncRNA gene	no	ENST00000577847.1;ENST00000583062.1	0.145	0.085	0.852	0.312(2987)	0.373(262)	0.386(6713)	non tumor-specific	nAS	yes
UN_PSMG4_UP_LS0066	chr6:3154703|3177324:+	PSMG4	proteasome assembly chaperone 4	protein coding gene	no	.	2.904	1.368	0.000	0.006(53)	0.001(1)	0(0)	non tumor-specific	nAS	no
MAP3K8_LS007	chr10:30434748|30438916:+	MAP3K8	mitogen-activated protein kinase kinase kinase 8	protein coding gene	yes	ENST00000413724.5;ENST00000413724.5	0.901	0.650	3.514	0.607(5816)	0.739(519)	0.776(13480)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_LINC02021_UP_LS0001	chr3:130079550|130082363:+	LINC02021	long intergenic non-protein coding RNA 2021	lncRNA gene	no	.	3.821	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SYNPR_LS0039	chr3:63498946|63549978:-	SYNPR	synaptoporin	protein coding gene	no	.	2.423	0.440	0.000	0.037(354)	0.007(5)	0(0)	non tumor-specific	nAS	no
AP1B1_LS020	chr22:29350150|29351171:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	ENST00000432560.6;ENST00000357586.6;ENST00000405198.5;ENST00000317368.11;ENST00000402502.5;ENST00000415447.5;ENST00000421126.5;ENST00000415756.1	118.009	79.684	52.194	0.99(9486)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
SLC7A11_LS001	chr4:138172017|138179217:-	SLC7A11	solute carrier family 7 member 11	protein coding gene	no	ENST00000280612.9;ENST00000509248.1	6.398	1.873	1.348	0.5(4788)	0.228(160)	0.356(6182)	non tumor-specific	alt_3prime	yes
UN_SDK1_LS0051	chr7:3964743|3966137:-	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	.	2.796	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
STAG3_LS008	chr7:100182839|100186200:+	STAG3	stromal antigen 3	protein coding gene	no	ENST00000426455.5;ENST00000615138.4;ENST00000416412.5;ENST00000317296.9;ENST00000496157.5	2.969	0.117	0.871	0.133(1278)	0.009(6)	0.384(6668)	non tumor-specific	exon_skip	yes
UN_EFS_LS0009	chr14:23359131|23359317:-	EFS	embryonal Fyn-associated substrate	protein coding gene	no	.	2.820	0.630	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_IGHA1_LS0137	chr14:105708105|105708367:+	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	80.833	56.561	0.000	0.008(78)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_ACTR1A_LS0020	chr10:102470075|102470221:+	ACTR1A	actin related protein 1A	protein coding gene	no	.	2.067	0.175	0.000	0.016(152)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
ATG7_LS014	chr3:11299416|11304504:+	ATG7	autophagy related 7	protein coding gene	no	ENST00000460444.5;ENST00000469654.2	0.167	0.046	0.765	0.019(180)	0.004(3)	0.323(5617)	non tumor-specific	nAS	yes
HLA-DMA_LS002	chr6:32948868|32949274:-	HLA-DMA	major histocompatibility complex, class II, DM alpha	protein coding gene	no	ENST00000477541.1	5.930	6.709	8.221	0.957(9171)	0.976(685)	0.946(16437)	non tumor-specific	alt_5prime	yes
PTCD3_LS018	chr2:86119614|86121479:+	PTCD3	pentatricopeptide repeat domain 3	protein coding gene	no	ENST00000465560.5	0.241	0.181	3.341	0.572(5479)	0.454(319)	0.888(15440)	non tumor-specific	exon_skip	yes
DNER_LS004	chr2:229407345|229418108:-	DNER	delta/notch like EGF repeat containing	protein coding gene	no	ENST00000341772.4	59.546	38.816	5.400	0.348(3332)	0.553(388)	0.722(12549)	non tumor-specific	exon_skip	yes
UN_LINC01411_LS0028	chr5:174454534|174460031:-	LINC01411	long intergenic non-protein coding RNA 1411	lncRNA gene	no	.	1.285	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C20orf181_UP_LS0007	chr20:63864270|63865041:-	C20orf181	chromosome 20 open reading frame 181	lncRNA gene	no	.	1.056	0.394	0.000	0.099(944)	0.033(23)	0(0)	non tumor-specific	nAS	no
AC051618.1_LS001	chr10:54864796|54869039:-	AC051618.1	-	lncRNA gene	no	ENST00000414295.1	0.223	0.021	8.515	0.017(163)	0.037(26)	0.057(996)	non tumor-specific	nAS	yes
UN_MOB3B_LS0013	chr9:27437144|27458256:+	MOB3B	MOB kinase activator 3B	protein coding gene	no	.	3.052	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LIMS1_LS007	chr2:108657940|108659605:+	LIMS1	LIM zinc finger domain containing 1	protein coding gene	no	ENST00000434274.2	0.071	0.037	0.646	0.085(818)	0.094(66)	0.006(106)	non tumor-specific	nAS	yes
SERPINF2_LS021	chr17:1749137|1754122:+	SERPINF2	serpin family F member 2	protein coding gene	no	.;.;.	3.676	0.183	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_MLXIPL_LS0042	chr7:73605969|73606974:-	MLXIPL	MLX interacting protein like	protein coding gene	no	.	2.168	2.071	0.000	0.006(53)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PIAS1_LS027	chr15:68191806|68192154:+	PIAS1	protein inhibitor of activated STAT 1	protein coding gene	yes	ENST00000611270.1	0.716	0.421	1.091	0.369(3532)	0.369(259)	0.554(9631)	non tumor-specific	nAS	yes
UN_PLGLB1_UP_LS0004	chr2:87023533|87031816:-	PLGLB1	plasminogen like B1	protein coding gene	no	.	2.430	0.537	0.000	0.03(289)	0.034(24)	0(0)	non tumor-specific	nAS	no
UBR5_LS077	chr8:102347092|102360071:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	ENST00000520539.5;ENST00000220959.8;ENST00000521922.5	14.393	9.601	7.104	0.77(7377)	0.877(616)	0.943(16391)	non tumor-specific	exon_skip	yes
UN_CMTM8_LS0017	chr3:32367820|32367927:+	CMTM8	CKLF like MARVEL transmembrane domain containing 8	protein coding gene	no	.	9.801	0.165	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_PRG4_LS0111	chr1:186307772|186308187:-	PRG4	proteoglycan 4	protein coding gene	no	.	0.576	0.365	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
RDX_LS002	chr11:110124270|110131436:-	RDX	radixin	protein coding gene	no	ENST00000645527.1	0.291	0.932	0.000	0(1)	0.003(2)	0(0)	non tumor-specific	nAS	yes
CSF3R_LS002	chr1:36466827|36467230:-	CSF3R	colony stimulating factor 3 receptor	protein coding gene	yes	ENST00000373106.5;ENST00000373104.5;ENST00000361632.8;ENST00000464465.6;ENST00000331941.6;ENST00000487540.6;ENST00000484762.1	22.254	9.009	13.336	0.913(8747)	0.909(638)	0.95(16505)	non tumor-specific	alt_3prime;exon_skip	yes
LRIG2_LS015	chr1:113107757|113110242:+	LRIG2	leucine rich repeats and immunoglobulin like domains 2	protein coding gene	no	ENST00000361127.5;ENST00000492207.5;ENST00000466161.1	5.318	3.151	4.617	0.872(8352)	0.903(634)	0.932(16194)	non tumor-specific	exon_skip	yes
UN_AC021915.2_UP_LS0004	chr8:51961183|52022416:+	AC021915.2	-	lncRNA gene	no	.	3.487	1.404	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CENPW_UP_LS0019	chr6:126335923|126339927:+	CENPW	centromere protein W	protein coding gene	yes	.	1.164	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PGR_LS0001	chr11:101034451|101091403:+	PGR	progesterone receptor	protein coding gene	yes	.	3.152	0.263	0.000	0.006(55)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_GGA1_LS0056	chr22:37631859|37631996:+	GGA1	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein coding gene	no	.	1.762	0.321	0.000	0.018(168)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_AP001625.2_UP_LS0033	chr21:42588138|42588241:-	AP001625.2	-	lncRNA gene	no	.	2.546	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR76_LS008	chr15:43842516|43842628:+	WDR76	WD repeat domain 76	protein coding gene	no	ENST00000263795.10;ENST00000381246.6;ENST00000452115.1	15.560	4.211	4.699	0.903(8648)	0.869(610)	0.922(16018)	non tumor-specific	exon_skip	yes
UN_RAPGEFL1_LS0001	chr17:40177122|40177492:+	RAPGEFL1	Rap guanine nucleotide exchange factor like 1	protein coding gene	no	.	0.552	0.107	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SAC3D1_LS0001	chr11:65041120|65041286:+	SAC3D1	SAC3 domain containing 1	protein coding gene	no	.	1.071	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AL049775.2_LS002	chr14:85364085|85398149:-	AL049775.2	-	lncRNA gene	no	ENST00000557547.1	5.409	0.000	0.621	0.001(5)	0(0)	0.006(112)	non tumor-specific	nAS	yes
UN_R3HCC1L_LS0055	chr10:98156147|98163293:+	R3HCC1L	R3H domain and coiled-coil containing 1 like	protein coding gene	no	.	1.235	0.196	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
SMPD4_LS006	chr2:130153935|130154355:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000449159.5	0.772	0.391	0.929	0.854(8179)	0.809(568)	0.519(9017)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_REXO1_LS0053	chr19:1828631|1839850:-	REXO1	RNA exonuclease 1 homolog	protein coding gene	no	.	1.061	0.340	0.000	0.011(106)	0.019(13)	0(0)	non tumor-specific	nAS	no
FARSA-AS1_LS002	chr19:12933037|12933149:+	FARSA-AS1	FARSA antisense RNA 1	lncRNA gene	no	ENST00000592636.1	1.166	0.090	0.745	0.008(81)	0.006(4)	0.106(1844)	non tumor-specific	nAS	yes
CUL1_LS025	chr7:148799388|148800502:+	CUL1	cullin 1	protein coding gene	yes	ENST00000409469.5;ENST00000602748.5;ENST00000325222.8;ENST00000617797.1	146.545	71.497	102.278	0.944(9046)	0.949(666)	0.979(17021)	non tumor-specific	nAS	yes
WDR59_LS045	chr16:74965822|75000023:-	WDR59	WD repeat domain 59	protein coding gene	no	ENST00000568323.5	0.159	0.084	0.688	0.644(6168)	0.692(486)	0.144(2495)	non tumor-specific	nAS	yes
DNAAF3_LS002	chr19:55159607|55159899:-	DNAAF3	dynein axonemal assembly factor 3	protein coding gene	no	ENST00000455045.5;ENST00000533527.6;ENST00000524407.6;ENST00000528412.5;ENST00000527223.6;ENST00000391720.8;ENST00000588076.1	3.781	2.304	1.462	0.636(6092)	0.587(412)	0.514(8934)	non tumor-specific	alt_3prime	yes
UN_LINC00630_LS0004	chrX:102769437|102770352:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	.	0.349	0.018	0.000	0.01(95)	0.003(2)	0(0)	non tumor-specific	nAS	no
P3H2_LS003	chr3:189958004|189963958:-	P3H2	prolyl 3-hydroxylase 2	protein coding gene	no	ENST00000319332.9;ENST00000427335.6;ENST00000490940.1;ENST00000319332.9;ENST00000427335.6;ENST00000490940.1	46.979	61.395	15.727	0.932(8929)	0.987(693)	0.925(16077)	non tumor-specific	alt_5prime;exon_skip	yes
SSBP1_LS007	chr7:141738503|141739124:+	SSBP1	single stranded DNA binding protein 1	protein coding gene	no	ENST00000498107.5;ENST00000461433.1;ENST00000498107.5;ENST00000461433.1	2.606	1.430	18.539	0.993(9515)	0.991(696)	0.978(16996)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SPARCL1_LS006	chr4:87479578|87480372:-	SPARCL1	SPARC like 1	protein coding gene	yes	ENST00000282470.10;ENST00000418378.5;ENST00000503414.5	720.564	782.092	1103.425	0.985(9439)	0.997(700)	0.975(16948)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PTCD2_LS0015	chr5:72359527|72359604:+	PTCD2	pentatricopeptide repeat domain 2	protein coding gene	no	.	1.737	0.179	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
CCL28_LS012	chr5:43388476|43412253:-	CCL28	C-C motif chemokine ligand 28	protein coding gene	no	ENST00000489442.5;ENST00000361115.4;ENST00000514421.1	2.465	13.908	3.263	0.561(5374)	0.688(483)	0.244(4233)	non tumor-specific	exon_skip	yes
PPT1_LS010	chr1:40080487|40089410:-	PPT1	palmitoyl-protein thioesterase 1	protein coding gene	no	ENST00000642050.1;ENST00000641471.1;ENST00000641083.1;ENST00000530704.6;ENST00000433473.8;ENST00000641319.1;ENST00000439754.6;ENST00000641236.1;ENST00000641691.1;ENST00000449045.7;ENST00000529905.5;ENST00000372779.9	177.726	117.677	72.245	0.996(9541)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime	yes
ZNF890P_LS005	chr7:5132489|5136555:-	ZNF890P	zinc finger protein 890, pseudogene	pseudogene	no	ENST00000422060.2	1.207	0.187	1.316	0.012(112)	0.004(3)	0.088(1533)	non tumor-specific	nAS	yes
UN_EXD2_LS0004	chr14:69192037|69203917:+	EXD2	exonuclease 3'-5' domain containing 2	protein coding gene	no	.	1.007	0.094	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_LINC02441_LS0005	chr12:128026199|128026742:-	LINC02441	long intergenic non-protein coding RNA 2441	lncRNA gene	no	.	3.005	3.316	0.000	0.001(12)	0.009(6)	0(0)	non tumor-specific	nAS	no
GSDMB_LS007	chr17:39906271|39906961:-	GSDMB	gasdermin B	protein coding gene	no	ENST00000360317.7;ENST00000309481.11;ENST00000394179.5;ENST00000418519.5;ENST00000523371.5;ENST00000522564.5;ENST00000519429.1;ENST00000360317.7;ENST00000309481.11;ENST00000394179.5;ENST00000418519.5;ENST00000523371.5;ENST00000522564.5;ENST00000519429.1	14.667	10.320	9.827	0.944(9046)	0.909(638)	0.963(16736)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_VASP_LS0046	chr19:45526243|45526342:-	VASP	vasodilator stimulated phosphoprotein	protein coding gene	no	.	5.760	0.750	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC29A3_LS007	chr10:71344291|71356081:+	SLC29A3	solute carrier family 29 member 3	protein coding gene	no	ENST00000643752.1	3.409	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	exon_skip	yes
AC140725.1_LS002	chr15:101960398|101960923:-	AC140725.1	-	lncRNA gene	no	ENST00000561145.1	0.345	0.137	0.815	0.173(1662)	0.124(87)	0.023(401)	non tumor-specific	nAS	yes
UN_AC133785.1_LS0005	chr2:130833116|130834941:-	AC133785.1	-	lncRNA gene	no	.	1.825	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SHANK2_LS0079	chr11:71205877|71224697:-	SHANK2	SH3 and multiple ankyrin repeat domains 2	protein coding gene	no	.	1.693	0.288	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_ZNRF1_LS0046	chr16:75106571|75109866:+	ZNRF1	zinc and ring finger 1	protein coding gene	no	.	0.298	0.075	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC120193.1_LS007	chr8:24884123|24912012:-	AC120193.1	-	lncRNA gene	no	ENST00000519689.1	0.286	0.000	0.760	0.001(9)	0(0)	0.003(57)	non tumor-specific	nAS	yes
LMBR1_LS020	chr7:156725837|156727930:-	LMBR1	limb development membrane protein 1	protein coding gene	no	ENST00000353442.9;ENST00000359422.8;ENST00000448926.5;ENST00000415428.5;ENST00000454132.5;ENST00000461603.5	30.762	20.518	14.861	0.966(9254)	0.987(693)	0.975(16953)	non tumor-specific	exon_skip	yes
SLC26A7_LS014	chr8:91340551|91343353:+	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	ENST00000522181.5;ENST00000523719.5;ENST00000617078.3;ENST00000617233.2;ENST00000276609.7;ENST00000309536.6	10.259	22.269	0.909	0.099(951)	0.315(221)	0.211(3675)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC009093.1_LS0001	chr16:29217664|29217781:-	AC009093.1	-	lncRNA gene	no	.	1.596	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
TMUB2_LS006	chr17:44187109|44189022:+	TMUB2	transmembrane and ubiquitin like domain containing 2	protein coding gene	no	ENST00000357984.7;ENST00000590235.5;ENST00000357984.7;ENST00000590235.5	0.148	0.133	2.883	0.679(6510)	0.728(511)	0.915(15898)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ITM2B_LS0017	chr13:48233477|48233930:+	ITM2B	integral membrane protein 2B	protein coding gene	no	.	5.290	1.673	0.000	0.025(236)	0.041(29)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
ZNF205_LS008	chr16:3112876|3113417:+	ZNF205	zinc finger protein 205	protein coding gene	no	.;.	2.369	0.762	0.000	0.119(1139)	0.066(46)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PER2_LS016	chr2:238261837|238262191:-	PER2	period circadian regulator 2	protein coding gene	yes	ENST00000254657.7;ENST00000491417.1;ENST00000355768.6	9.625	11.325	6.605	0.908(8699)	0.973(683)	0.941(16358)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
USP15_LS004	chr12:62302920|62304673:+	USP15	ubiquitin specific peptidase 15	protein coding gene	no	ENST00000537297.2	1.101	0.969	3.680	0.484(4641)	0.563(395)	0.85(14778)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_RPL7P43_UP_LS0002	chr12:76633056|76691046:+	RPL7P43	ribosomal protein L7 pseudogene 43	pseudogene	no	.	1.446	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL137793.1_UP_LS0038	chr1:229123113|229184050:-	AL137793.1	-	lncRNA gene	no	.	2.954	0.352	0.000	0.003(31)	0.02(14)	0(0)	non tumor-specific	nAS	no
MTSS1L_LS027	chr16:70681025|70685723:-	MTSS1L	MTSS I-BAR domain containing 2	protein coding gene	no	ENST00000338779.10;ENST00000616026.4	11.564	6.480	24.021	0.929(8896)	0.981(689)	0.943(16398)	non tumor-specific	exon_skip	yes
UN_SVIL-AS1_UP_LS0005	chr10:29321997|29345303:+	SVIL-AS1	SVIL antisense RNA 1	pseudogene	no	.	3.247	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HNRNPC_LS0004	chr14:21210489|21211406:-	HNRNPC	heterogeneous nuclear ribonucleoprotein C	protein coding gene	no	.	12.888	2.459	0.000	0.005(45)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL078590.2_UP_LS0002	chr6:134531064|134805738:-	AL078590.2	-	lncRNA gene	no	.	10.835	0.081	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WASF1_LS0026	chr6:110127629|110177742:-	WASF1	WASP family member 1	protein coding gene	no	.	2.643	0.065	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DOCK5_LS0052	chr8:25366970|25368571:+	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	.	2.154	0.299	0.000	0.009(85)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_CTBP1-DT_LS0006	chr4:1250350|1250639:+	CTBP1-DT	CTBP1 divergent transcript	lncRNA gene	no	.	0.961	0.453	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TJP1_LS0018	chr15:29705222|29705528:-	TJP1	tight junction protein 1	protein coding gene	no	.	1.009	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC064807.1_LS0007	chr8:51899846|51941998:+	AC064807.1	-	lncRNA gene	no	.	1.037	0.518	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
CCDC146_LS026	chr7:77293200|77294663:+	CCDC146	coiled-coil domain containing 146	protein coding gene	no	ENST00000285871.4;ENST00000415740.6;ENST00000461259.5;ENST00000478101.1;ENST00000488998.1	13.965	11.774	19.303	0.958(9182)	0.963(676)	0.975(16953)	non tumor-specific	exon_skip	yes
MALT1_LS007	chr18:58709556|58709976:+	MALT1	MALT1 paracaspase	protein coding gene	yes	ENST00000348428.7;ENST00000649217.1;ENST00000345724.7;ENST00000650045.1;ENST00000649202.1	17.600	11.311	9.807	0.92(8814)	0.974(684)	0.961(16699)	non tumor-specific	exon_skip;intron_retention	yes
SLC38A7_LS025	chr16:58680241|58683955:-	SLC38A7	solute carrier family 38 member 7	protein coding gene	no	ENST00000570101.5;ENST00000219320.8;ENST00000564100.5;ENST00000566598.5;ENST00000562149.5;ENST00000563196.5;ENST00000564391.1	6.337	3.381	6.601	0.957(9166)	0.977(686)	0.962(16730)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AHNAK_LS0474	chr11:62520666|62522023:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	3.722	1.045	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CICP14_UP_LS0001	chr7:128658971|128659020:-	CICP14	capicua transcriptional repressor pseudogene 14	pseudogene	no	.	2.831	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NALCN_LS029	chr13:101117006|101124608:-	NALCN	sodium leak channel, non-selective	protein coding gene	no	ENST00000467264.1	0.501	0.093	0.979	0.06(577)	0.03(21)	0.204(3554)	non tumor-specific	exon_skip	yes
LINC01819_LS006	chr2:43033526|43036696:-	LINC01819	long intergenic non-protein coding RNA 1819	lncRNA gene	no	ENST00000425212.1	3.596	1.761	1.033	0.174(1670)	0.276(194)	0.308(5349)	non tumor-specific	nAS	yes
PTPA_LS030	chr9:129142177|129142445:+	PTPA	protein tyrosine phosphatase receptor type A	protein coding gene	no	ENST00000434095.2	1.803	0.278	1.540	0.856(8201)	0.749(526)	0.604(10507)	non tumor-specific	alt_3prime;alt_5prime	yes
DEK_LS013	chr6:18258062|18258304:-	DEK	DEK proto-oncogene	protein coding gene	yes	ENST00000397239.7;ENST00000515770.2;ENST00000503715.5;ENST00000515742.1	151.981	81.705	66.044	0.992(9503)	0.994(698)	0.979(17019)	non tumor-specific	exon_skip	yes
B3GALNT2_LS014	chr1:235494823|235504141:-	B3GALNT2	beta-1,3-N-acetylgalactosaminyltransferase 2	protein coding gene	no	.;.	1.079	0.087	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ZIC2_LS004	chr13:99985109|99985323:+	ZIC2	Zic family member 2	protein coding gene	yes	ENST00000376335.7;ENST00000490085.5;ENST00000468291.1;ENST00000477213.1	5.301	0.774	4.138	0.51(4890)	0.141(99)	0.241(4194)	non tumor-specific	alt_3prime;intron_retention	yes
GPN1_LS002	chr2:27628714|27629859:+	GPN1	GPN-loop GTPase 1	protein coding gene	no	ENST00000481754.1;ENST00000458167.6;ENST00000424214.5	0.150	0.062	0.697	0.563(5392)	0.59(414)	0.016(274)	non tumor-specific	nAS	yes
UN_EFCAB2_LS0054	chr1:245113578|245121920:+	EFCAB2	EF-hand calcium binding domain 2	protein coding gene	no	.	1.775	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPHP3-ACAD11_LS0021	chr3:132605205|132606867:-	NPHP3-ACAD11	NPHP3-ACAD11 readthrough (NMD candidate)	protein coding gene	no	.	1.634	0.219	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	nAS	no
LASP1_LS010	chr17:38915146|38918605:+	LASP1	LIM and SH3 protein 1	protein coding gene	no	ENST00000433206.6;ENST00000318008.10;ENST00000585841.5;ENST00000443937.7;ENST00000435347.7	53.907	43.247	58.207	0.989(9478)	0.989(694)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
YBX2_LS016	chr17:7293538|7293828:-	YBX2	Y-box binding protein 2	protein coding gene	no	ENST00000571834.5	0.102	0.067	1.149	0.183(1757)	0.225(158)	0.28(4875)	non tumor-specific	intron_retention	yes
PDCL_LS005	chr9:122823197|122826616:-	PDCL	phosducin like	protein coding gene	no	ENST00000436632.5;ENST00000259467.8;ENST00000394285.3	33.689	19.792	16.272	0.994(9519)	0.996(699)	0.978(16991)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UBBP4_LS0045	chr17:22204382|22204526:+	UBBP4	ubiquitin B pseudogene 4	pseudogene	no	.	10.662	1.947	0.000	0.007(67)	0.009(6)	0(0)	non tumor-specific	intron_retention	no
UN_FAM20C_LS0073	chr7:258705|259707:+	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	.	14.535	1.817	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
COL24A1_LS010	chr1:85761566|85775674:-	COL24A1	collagen type XXIV alpha 1 chain	protein coding gene	no	ENST00000370571.6	4.767	1.011	2.619	0.211(2024)	0.104(73)	0.694(12068)	non tumor-specific	exon_skip	yes
AL603832.1_LS001	chr1:112693850|112694501:-	AL603832.1	-	lncRNA gene	no	ENST00000421943.1	0.407	0.279	0.688	0.026(246)	0.094(66)	0.096(1663)	non tumor-specific	nAS	yes
ABCC3_LS052	chr17:50675476|50675631:+	ABCC3	ATP binding cassette subfamily C member 3	protein coding gene	no	ENST00000285238.12;ENST00000502426.5;ENST00000505699.5;ENST00000510633.5;ENST00000513745.1;ENST00000510891.1	28.792	24.213	12.192	0.786(7533)	0.927(651)	0.812(14121)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RABGGTA_LS009	chr14:24266889|24267660:-	RABGGTA	Rab geranylgeranyltransferase subunit alpha	protein coding gene	no	ENST00000561055.1;ENST00000560521.5;ENST00000399409.7;ENST00000216840.10;ENST00000560243.5;ENST00000559551.5;ENST00000559974.5;ENST00000558376.5;ENST00000560777.5;ENST00000560998.5;ENST00000558649.5;ENST00000559850.5;ENST00000560871.5	23.982	15.201	49.832	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
UN_ZNF846_LS0009	chr19:9754537|9755773:-	ZNF846	zinc finger protein 846	protein coding gene	no	.	0.784	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PSPH_LS017	chr7:56034103|56043148:-	PSPH	phosphoserine phosphatase	protein coding gene	no	.;.	1.221	0.362	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AC138969.1_LS004	chr16:16357810|16357929:+	AC138969.1	-	pseudogene	no	ENST00000532739.1	6.117	3.094	0.961	0.389(3731)	0.459(322)	0.4(6959)	non tumor-specific	nAS	yes
GATD1_LS019	chr11:770398|770993:-	GATD1	glutamine amidotransferase like class 1 domain containing 1	protein coding gene	no	ENST00000465313.6;ENST00000465313.6;ENST00000465313.6	0.029	0.037	1.502	0.673(6444)	0.614(431)	0.711(12361)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZNF696_LS018	chr8:143293065|143295740:+	ZNF696	zinc finger protein 696	protein coding gene	no	ENST00000523891.1;ENST00000518575.5;ENST00000330143.7;ENST00000518432.5;ENST00000523891.1;ENST00000518575.5;ENST00000330143.7;ENST00000518432.5	7.578	3.523	4.105	0.851(8157)	0.872(612)	0.936(16267)	non tumor-specific	alt_3prime;exon_skip	yes
PNP_LS007	chr14:20474948|20475062:+	PNP	pancreatic polypeptide	protein coding gene	no	ENST00000361505.9;ENST00000554056.5;ENST00000553591.1	63.506	49.645	43.609	0.996(9547)	0.997(700)	0.979(17012)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PDZD11_LS0019	chrX:70289621|70289860:-	PDZD11	PDZ domain containing 11	protein coding gene	no	.	2.021	0.124	0.000	0.015(140)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_RAB21_LS0023	chr12:71782225|71782570:+	RAB21	RAB21, member RAS oncogene family	protein coding gene	no	.	8.066	1.857	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RAB5C_LS0032	chr17:42125661|42125746:+	RAB5C	RAB5C, member RAS oncogene family	protein coding gene	no	.	2.362	1.049	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PRMT2_LS0007	chr21:46636990|46643532:+	PRMT2	protein arginine methyltransferase 2	protein coding gene	no	.	16.855	2.308	0.000	0.015(147)	0.014(10)	0(0)	non tumor-specific	alt_3prime	no
UN_NTN5_UP_LS0023	chr19:48707411|48713860:-	NTN5	netrin 5	protein coding gene	no	.	2.597	0.218	0.000	0.016(158)	0.009(6)	0(0)	non tumor-specific	nAS	no
CENPJ_LS016	chr13:24885670|24889316:-	CENPJ	centromere protein J	protein coding gene	no	ENST00000381884.8;ENST00000381884.8	5.199	2.370	4.535	0.893(8553)	0.838(588)	0.92(15987)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ERLIN2_LS0003	chr8:37737832|37737908:+	ERLIN2	ER lipid raft associated 2	protein coding gene	no	.	1.301	0.124	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
MAGOHB_LS010	chr12:10610680|10613439:-	MAGOHB	mago homolog B, exon junction complex subunit	protein coding gene	no	ENST00000320756.6;ENST00000544850.5;ENST00000537852.5;ENST00000544176.1;ENST00000320756.6;ENST00000544850.5;ENST00000537852.5;ENST00000544176.1	45.197	15.106	17.422	0.996(9546)	0.997(700)	0.977(16979)	non tumor-specific	alt_5prime;exon_skip	yes
ASAP1_LS026	chr8:130169067|130179264:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	ENST00000524124.5;ENST00000357668.2;ENST00000521075.5;ENST00000518721.5;ENST00000524367.5	15.871	6.466	12.037	0.87(8333)	0.923(648)	0.972(16896)	non tumor-specific	exon_skip	yes
LINC01285_LS009	chrX:118855555|118884983:+	LINC01285	long intergenic non-protein coding RNA 1285	lncRNA gene	no	ENST00000634488.1	0.274	0.000	0.788	0(2)	0(0)	0.018(317)	non tumor-specific	nAS	yes
UN_KMT5A_LS0013	chr12:123389431|123389488:+	KMT5A	lysine methyltransferase 5A	protein coding gene	no	.	0.502	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
RTKN2_LS003	chr10:62199861|62204857:-	RTKN2	rhotekin 2	protein coding gene	no	ENST00000315289.6;ENST00000373789.7	3.753	11.631	1.173	0.518(4963)	0.349(245)	0.33(5738)	non tumor-specific	nAS	yes
UN_RHEX_LS0123	chr1:206064480|206064569:+	RHEX	regulator of hemoglobinization and erythroid cell expansion	protein coding gene	no	.	4.825	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093001.1_UP_LS0007	chr3:149224316|149225349:+	AC093001.1	-	lncRNA gene	no	.	4.225	0.500	0.000	0.003(25)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_FAM20C_LS0043	chr7:242154|246415:+	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	.	4.961	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
OSBPL2_LS002	chr20:62235363|62235472:+	OSBPL2	oxysterol binding protein like 2	protein coding gene	no	ENST00000615516.1	1.608	0.076	1.086	0.053(511)	0.013(9)	0.189(3278)	non tumor-specific	nAS	yes
UN_CCL20_LS0009	chr2:227806569|227815454:+	CCL20	C-C motif chemokine ligand 20	protein coding gene	no	.	3.396	0.162	0.000	0.023(216)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_KDELR3_LS0007	chr22:38468405|38474523:+	KDELR3	KDEL endoplasmic reticulum protein retention receptor 3	protein coding gene	no	.	1.662	0.083	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_PBXIP1_LS0094	chr1:154951948|154953671:-	PBXIP1	PBX homeobox interacting protein 1	protein coding gene	no	.	38.308	2.233	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NOTCH3_LS022	chr19:15184450|15184906:-	NOTCH3	notch receptor 3	protein coding gene	yes	ENST00000263388.6	45.295	25.226	27.657	0.887(8495)	0.929(652)	0.935(16245)	non tumor-specific	exon_skip	yes
UN_C16orf70_LS0019	chr16:67138251|67139984:+	C16orf70	chromosome 16 open reading frame 70	protein coding gene	no	.	2.408	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCNQ1_LS0040	chr11:2589121|2591226:-	KCNQ1	potassium voltage-gated channel subfamily Q member 1	protein coding gene	no	.	2.514	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
STAM_LS010	chr10:17695241|17696775:+	STAM	signal transducing adaptor molecule	protein coding gene	no	ENST00000377524.7;ENST00000377500.1;ENST00000494250.1	20.002	12.900	19.576	0.975(9338)	0.99(695)	0.978(16997)	non tumor-specific	nAS	yes
SSPO_LS084	chr7:149818807|149819306:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000623373.3;ENST00000378016.4	2.954	0.422	1.955	0.061(587)	0.013(9)	0.666(11580)	non tumor-specific	nAS	yes
ANAPC2_LS013	chr9:137183242|137183672:-	ANAPC2	anaphase promoting complex subunit 2	protein coding gene	no	ENST00000323927.2;ENST00000495611.1	54.250	33.211	57.596	0.994(9520)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NDST1_UP_LS0002	chr5:150169288|150401696:+	NDST1	N-deacetylase and N-sulfotransferase 1	protein coding gene	no	.	2.170	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XIAP_LS0039	chrX:123910840|123911450:-	XIAP	X-linked inhibitor of apoptosis	protein coding gene	yes	.	1.483	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
IBA57_LS001	chr1:228166157|228174692:+	IBA57	iron-sulfur cluster assembly factor IBA57	protein coding gene	no	ENST00000366711.3	2.111	1.738	2.905	0.903(8649)	0.953(669)	0.914(15879)	non tumor-specific	alt_5prime	yes
UN_CPSF6_LS0005	chr12:69239706|69253051:+	CPSF6	cleavage and polyadenylation specific factor 6	protein coding gene	no	.	3.827	0.049	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ACTA2-AS1_LS006	chr10:88939808|88940087:+	ACTA2-AS1	ACTA2 antisense RNA 1	lncRNA gene	no	ENST00000596007.1	0.159	0.000	0.589	0.002(16)	0(0)	0.01(178)	non tumor-specific	nAS	yes
ZNF618_LS001	chr9:113876413|113969117:+	ZNF618	zinc finger protein 618	protein coding gene	no	ENST00000374126.9;ENST00000615615.4;ENST00000288466.11;ENST00000452710.5;ENST00000374124.4;ENST00000481558.1	0.780	0.639	1.813	0.623(5970)	0.638(448)	0.721(12536)	non tumor-specific	exon_skip	yes
ESYT3_LS020	chr3:138473093|138473536:+	ESYT3	extended synaptotagmin 3	protein coding gene	no	ENST00000486831.5	0.359	0.123	2.342	0.176(1684)	0.289(203)	0.556(9657)	non tumor-specific	alt_5prime	yes
UN_PVT1_LS0167	chr8:128032859|128070160:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	2.683	0.000	0.000	0.006(59)	0(0)	0(0)	non tumor-specific	nAS	no
ADORA2A_LS011	chr22:24431634|24433131:+	ADORA2A	adenosine A2a receptor	protein coding gene	no	ENST00000486351.1	0.578	0.086	0.762	0.004(34)	0.001(1)	0.071(1232)	non tumor-specific	nAS	yes
UN_ASMTL_LS0040	chrX:1414310|1414743:+	ASMTL	acetylserotonin O-methyltransferase like	protein coding gene	no	.	3.100	0.311	0.000	0.039(374)	0.004(3)	0(0)	non tumor-specific	nAS	no
KDM5A_LS006	chr12:295793|297041:-	KDM5A	lysine demethylase 5A	protein coding gene	yes	ENST00000399788.6	34.212	19.444	16.780	0.967(9263)	0.987(693)	0.978(16994)	non tumor-specific	alt_3prime;exon_skip	yes
NLRP1_LS026	chr17:5560043|5581859:-	NLRP1	NLR family pyrin domain containing 1	protein coding gene	no	ENST00000544378.6;ENST00000262467.9;ENST00000613500.4;ENST00000571451.6;ENST00000269280.8;ENST00000572272.5;ENST00000354411.7;ENST00000577119.5;ENST00000619223.4;ENST00000617618.4;ENST00000345221.7;ENST00000571307.1	7.927	4.262	16.502	0.784(7515)	0.915(642)	0.95(16515)	non tumor-specific	exon_skip	yes
ANKRD26_LS015	chr10:27037323|27037871:-	ANKRD26	ankyrin repeat domain 26	protein coding gene	no	ENST00000436985.6;ENST00000376087.4	4.531	2.526	4.829	0.714(6845)	0.759(533)	0.926(16093)	non tumor-specific	exon_skip	yes
UN_AC116345.2_UP_LS0002	chr5:73189163|73197219:-	AC116345.2	-	pseudogene	no	.	3.888	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
AP000593.3_LS001	chr11:72302362|72302612:+	AP000593.3	-	lncRNA gene	no	ENST00000546065.1	1.220	0.091	0.686	0.104(995)	0.038(27)	0.066(1155)	non tumor-specific	nAS	yes
UN_CEP164_LS0020	chr11:117334205|117335605:+	CEP164	centrosomal protein 164	protein coding gene	no	.	0.515	0.062	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
UQCC1_LS010	chr20:35314765|35381918:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	ENST00000359226.6	0.039	0.075	0.696	0.698(6690)	0.745(523)	0.036(632)	non tumor-specific	exon_skip	yes
NUTM2B-AS1_LS008	chr10:79766324|79804485:-	NUTM2B-AS1	NUTM2B antisense RNA 1	lncRNA gene	no	ENST00000601369.5;ENST00000619625.4;ENST00000483080.5;ENST00000488805.5	10.768	7.292	23.311	0.991(9497)	0.996(699)	0.979(17010)	non tumor-specific	nAS	yes
KRT77_LS008	chr12:52697896|52698176:-	KRT77	keratin 77	protein coding gene	no	ENST00000553168.1	1.919	0.148	5.899	0.006(59)	0.001(1)	0.083(1444)	non tumor-specific	exon_skip	yes
UN_AC004540.1_LS0006	chr7:26399021|26412185:+	AC004540.1	-	lncRNA gene	no	.	1.423	0.308	0.000	0.135(1297)	0.13(91)	0(0)	non tumor-specific	nAS	no
ANKRD36_LS010	chr2:97144712|97146486:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	ENST00000461153.7;ENST00000420699.7	3.621	0.445	2.907	0.089(850)	0.08(56)	0.852(14816)	non tumor-specific	exon_skip	yes
FERMT2_LS004	chr14:52860465|52861587:-	FERMT2	fermitin family member 2	protein coding gene	no	.;.	2.603	0.362	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
MYH14_LS041	chr19:50280141|50280231:+	MYH14	myosin heavy chain 14	protein coding gene	no	ENST00000598205.5;ENST00000440075.6;ENST00000425460.5;ENST00000376970.6;ENST00000642316.1;ENST00000601313.6;ENST00000596571.5;ENST00000262269.12	75.175	67.262	24.100	0.891(8535)	0.97(681)	0.873(15174)	non tumor-specific	nAS	yes
CIC_LS019	chr19:42292466|42292566:+	CIC	capicua transcriptional repressor	protein coding gene	yes	ENST00000575354.6	60.926	33.192	65.329	0.959(9187)	0.986(692)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
SPNS2_LS001	chr17:4499417|4513247:+	SPNS2	sphingolipid transporter 2	protein coding gene	no	ENST00000329078.7	2.761	4.730	11.956	0.784(7514)	0.94(660)	0.924(16063)	non tumor-specific	alt_5prime;exon_skip	yes
USP45_LS008	chr6:99446463|99465080:-	USP45	ubiquitin specific peptidase 45	protein coding gene	no	ENST00000369233.6;ENST00000369233.6	0.015	0.017	0.681	0.035(331)	0.054(38)	0.002(43)	non tumor-specific	alt_5prime;exon_skip	yes
P2RX1_LS013	chr17:3904929|3905220:-	P2RX1	purinergic receptor P2X 1	protein coding gene	no	ENST00000572418.1;ENST00000225538.3	8.099	8.416	5.142	0.318(3049)	0.521(366)	0.753(13085)	non tumor-specific	exon_skip	yes
UN_CHD6_LS0040	chr20:41455973|41457264:-	CHD6	chromodomain helicase DNA binding protein 6	protein coding gene	no	.	1.158	0.350	0.000	0.005(52)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_KRT73-AS1_UP_LS0516	chr12:52491725|52519023:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	42.541	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GAPDH_LS0160	chr12:6537767|6537796:-	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	360.234	18.045	0.000	0.02(193)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_C5orf67_LS0004	chr5:56533155|56533999:-	C5orf67	chromosome 5 putative open reading frame 67	protein coding gene	no	.	1.553	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC016994.1_UP_LS0001	chr2:106522186|106557305:+	AC016994.1	-	lncRNA gene	no	.	6.468	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AC004594.1_LS004	chr7:122354416|122422002:+	AC004594.1	-	lncRNA gene	no	ENST00000631248.2	0.759	0.000	0.809	0(3)	0(0)	0.005(79)	non tumor-specific	nAS	yes
KCTD2_LS008	chr17:75035357|75040124:+	KCTD2	potassium channel tetramerization domain containing 2	protein coding gene	no	ENST00000584570.5	0.074	0.010	0.942	0.018(171)	0.004(3)	0.09(1558)	non tumor-specific	nAS	yes
PIK3CD_LS010	chr1:9716619|9717064:+	PIK3CD	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein coding gene	no	ENST00000536656.5;ENST00000628140.2;ENST00000543390.2;ENST00000361110.6	0.448	0.629	0.843	0.136(1305)	0.097(68)	0.286(4973)	non tumor-specific	alt_3prime	yes
UN_HERC1_LS0106	chr15:63725510|63727647:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	.	1.465	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADRA2C_LS0027	chr4:3767874|3768235:-	ADRA2C	adrenoceptor alpha 2C	protein coding gene	no	.	1.109	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HIRA_LS0011	chr22:19351256|19351358:-	HIRA	histone cell cycle regulator	protein coding gene	yes	.	2.536	1.506	0.000	0.03(291)	0.023(16)	0(0)	non tumor-specific	nAS	no
URB1_LS005	chr21:32320640|32321801:-	URB1	URB1 ribosome biogenesis homolog	protein coding gene	no	ENST00000382751.3	30.148	14.515	18.320	0.97(9291)	0.984(691)	0.973(16908)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ADH5P2_UP_LS0010	chr1:79390382|79403972:+	ADH5P2	ADH5 pseudogene 2	pseudogene	no	.	2.778	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DOCK8_LS0017	chr9:312166|325671:+	DOCK8	dedicator of cytokinesis 8	protein coding gene	no	.	1.287	0.115	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MST1_LS038	chr3:49687897|49689045:-	MST1	serine/threonine kinase 4	protein coding gene	yes	ENST00000491943.1	0.470	0.191	0.767	0.192(1840)	0.124(87)	0.174(3031)	non tumor-specific	intron_retention	yes
MINDY1_LS025	chr1:151002400|151006312:-	MINDY1	MINDY lysine 48 deubiquitinase 1	protein coding gene	no	ENST00000493834.2	0.404	0.187	0.715	0.485(4645)	0.665(467)	0.163(2832)	non tumor-specific	alt_3prime;exon_skip	yes
EPB41L1_LS045	chr20:36195364|36197859:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	ENST00000373946.7;ENST00000338074.6;ENST00000373941.5	7.306	9.098	3.965	0.661(6332)	0.85(597)	0.839(14587)	non tumor-specific	exon_skip	yes
GNB3_LS013	chr12:6843076|6843174:+	GNB3	G protein subunit beta 3	protein coding gene	no	ENST00000540458.5;ENST00000229264.7;ENST00000541257.5;ENST00000541978.5;ENST00000435982.6;ENST00000539127.5;ENST00000537035.1	1.414	0.414	6.295	0.286(2738)	0.218(153)	0.896(15578)	non tumor-specific	nAS	yes
BCL7B_LS018	chr7:73553669|73557487:-	BCL7B	BAF chromatin remodeling complex subunit BCL7B	protein coding gene	no	ENST00000455335.2	0.407	0.800	3.144	0.843(8081)	0.892(626)	0.908(15784)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EMC3_LS0088	chr3:9998899|10006807:+	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	.	2.129	0.005	0.000	0.011(105)	0.001(1)	0(0)	non tumor-specific	nAS	no
CALR_LS005	chr19:12940147|12940243:+	CALR	calreticulin	protein coding gene	no	ENST00000316448.9;ENST00000588454.5	2124.484	1060.146	448.803	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
SMARCA5_LS003	chr4:143521595|143524367:+	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein coding gene	no	ENST00000283131.3	77.416	56.556	31.548	0.967(9267)	0.989(694)	0.978(16999)	non tumor-specific	alt_3prime	yes
UN_MIR3144_UP_LS0007	chr6:119363332|119533881:+	MIR3144	microRNA 3144	small non-coding RNA gene	no	.	2.541	1.047	0.000	0.003(33)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_UBC_LS1060	chr12:124913774|124913861:-	UBC	ubiquitin C	protein coding gene	no	.	109.281	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BREA2_LS001	chr8:143697641|143697939:+	BREA2	long intergenic non-protein coding RNA 2878	lncRNA gene	no	ENST00000531565.1	0.655	0.165	0.750	0.113(1083)	0.068(48)	0.128(2225)	non tumor-specific	nAS	yes
INTS14_LS001	chr15:65579659|65581954:-	INTS14	integrator complex subunit 14	protein coding gene	no	ENST00000573314.5;ENST00000313182.6;ENST00000567744.5;ENST00000431261.6;ENST00000569491.5;ENST00000420799.6;ENST00000442903.3	89.104	44.288	40.029	0.986(9445)	0.987(693)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_RAD54L2_LS0010	chr3:51569478|51572825:+	RAD54L2	RAD54 like 2	protein coding gene	no	.	0.577	0.190	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CBLB_LS0042	chr3:105839467|105853414:-	CBLB	Cbl proto-oncogene B	protein coding gene	yes	.	1.815	0.163	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HACD1_LS0001	chr10:17594383|17599172:-	HACD1	3-hydroxyacyl-CoA dehydratase 1	protein coding gene	no	.	3.901	2.997	0.000	0.159(1527)	0.218(153)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SMG1P5_LS0007	chr16:30283842|30328524:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	.	2.045	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
KALRN_LS034	chr3:124461956|124462524:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	ENST00000460856.5;ENST00000240874.7;ENST00000360013.7;ENST00000354186.8;ENST00000393501.5;ENST00000494648.1	1.553	6.848	5.761	0.562(5381)	0.739(519)	0.874(15190)	non tumor-specific	nAS	yes
NRCAM_LS056	chr7:108312731|108328421:-	NRCAM	neuronal cell adhesion molecule	protein coding gene	yes	ENST00000442580.5;ENST00000456431.5	0.103	0.018	1.097	0.264(2525)	0.197(138)	0.057(999)	non tumor-specific	nAS	yes
ABCB8_LS023	chr7:151033061|151033605:+	ABCB8	ATP binding cassette subfamily B member 8	protein coding gene	no	ENST00000493338.1	0.174	0.054	1.010	0.781(7480)	0.788(553)	0.525(9119)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
XAGE1B_LS006	chrX:52515573|52516660:-	XAGE1B	X antigen family member 1B	protein coding gene	no	ENST00000375612.8	0.418	0.214	0.637	0.16(1536)	0.154(108)	0.001(19)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM143_LS013	chr19:48360183|48363898:-	TMEM143	transmembrane protein 143	protein coding gene	no	ENST00000598258.5	0.017	0.002	0.672	0.026(245)	0.024(17)	0.005(87)	non tumor-specific	exon_skip	yes
UN_SFPQ_LS0040	chr1:35191500|35192222:-	SFPQ	splicing factor proline and glutamine rich	protein coding gene	yes	.	13.509	4.647	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
TRAK1_LS014	chr3:42193205|42193824:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	ENST00000487159.5;ENST00000484786.5;ENST00000327628.9;ENST00000449246.5;ENST00000613405.4;ENST00000341421.7;ENST00000396175.5	49.404	40.157	28.553	0.987(9455)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_CCT6A_LS0020	chr7:56059640|56059712:+	CCT6A	chaperonin containing TCP1 subunit 6A	protein coding gene	no	.	5.861	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
OXA1L_LS009	chr14:22769934|22770193:+	OXA1L	OXA1L mitochondrial inner membrane protein	protein coding gene	no	ENST00000285848.9;ENST00000612549.4;ENST00000604262.5;ENST00000442110.5;ENST00000431881.6;ENST00000412791.5;ENST00000495424.5;ENST00000358043.5;ENST00000481218.1	127.977	79.771	140.930	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
DMBT1P1_LS018	chr10:122786178|122788911:+	DMBT1P1	deleted in malignant brain tumors 1 like 1 (pseudogene)	pseudogene	no	ENST00000439464.6	6.874	0.000	0.675	0(2)	0(0)	0.024(410)	non tumor-specific	nAS	yes
UN_MIER2_LS0045	chr19:340607|343285:-	MIER2	MIER family member 2	protein coding gene	no	.	1.451	0.289	0.000	0.013(126)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
LTBP1_LS034	chr2:33315269|33317698:+	LTBP1	latent transforming growth factor beta binding protein 1	protein coding gene	no	ENST00000489740.1	0.048	0.004	0.563	0.016(153)	0.017(12)	0.023(397)	non tumor-specific	nAS	yes
EHBP1L1_LS006	chr11:65579135|65579341:+	EHBP1L1	EH domain binding protein 1 like 1	protein coding gene	no	ENST00000309295.8;ENST00000533237.5;ENST00000634639.1;ENST00000531106.1;ENST00000309295.8;ENST00000533237.5;ENST00000634639.1;ENST00000531106.1	36.332	26.342	54.050	0.982(9409)	0.991(696)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF331_LS031	chr19:53569385|53571604:+	ZNF331	zinc finger protein 331	protein coding gene	no	ENST00000648236.1;ENST00000253144.13;ENST00000649326.1;ENST00000502248.5;ENST00000511593.6;ENST00000449416.5;ENST00000514374.5;ENST00000411977.6;ENST00000511154.5;ENST00000509047.5;ENST00000509585.5;ENST00000648122.1;ENST00000513999.5;ENST00000512387.6;ENST00000511567.5;ENST00000514022.5;ENST00000505949.5;ENST00000513265.5;ENST00000648511.1;ENST00000502616.5;ENST00000648397.1;ENST00000504493.6;ENST00000505426.1	6.064	8.357	15.715	0.919(8808)	0.987(693)	0.973(16916)	non tumor-specific	nAS	yes
UN_PTPRQ_LS0021	chr12:80550700|80552164:-	PTPRQ	protein tyrosine phosphatase receptor type R	protein coding gene	no	.	5.350	1.766	0.000	0.006(53)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_ZFP91-CNTF_LS0012	chr11:58612840|58614247:+	ZFP91-CNTF	ZFP91-CNTF readthrough (NMD candidate)	protein coding gene	no	.	6.556	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACBD6_LS0036	chr1:180397600|180413366:-	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	.	14.865	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SLC25A37_LS0019	chr8:23566813|23568259:+	SLC25A37	solute carrier family 25 member 37	protein coding gene	no	.	3.253	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_OR2A20P_LS0004	chr7:144253588|144254343:-	OR2A20P	olfactory receptor family 2 subfamily A member 20 pseudogene	pseudogene	no	.	2.707	0.436	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC003006.1_LS002	chr19:57682244|57750785:+	AC003006.1	-	protein coding gene	no	ENST00000594684.1	0.234	0.126	0.700	0.655(6272)	0.712(500)	0.13(2261)	non tumor-specific	nAS	yes
ARHGEF16_LS017	chr1:3474782|3475970:+	ARHGEF16	Rho guanine nucleotide exchange factor 16	protein coding gene	no	ENST00000378378.8;ENST00000378373.5;ENST00000378371.6;ENST00000418137.1;ENST00000485984.1	34.785	23.566	8.819	0.862(8263)	0.964(677)	0.847(14718)	non tumor-specific	nAS	yes
EPGN_LS011	chr4:74313170|74314580:+	EPGN	epithelial mitogen	protein coding gene	no	ENST00000413830.5;ENST00000446430.2	4.034	2.220	1.280	0.123(1174)	0.175(123)	0.126(2185)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LPIN2_LS019	chr18:2954599|2960649:-	LPIN2	lipin 2	protein coding gene	no	ENST00000261596.8;ENST00000584294.1;ENST00000584915.1	17.939	19.320	9.868	0.884(8469)	0.972(682)	0.963(16743)	non tumor-specific	alt_5prime;exon_skip	yes
MTMR10_LS013	chr15:30952038|30953562:-	MTMR10	myotubularin related protein 10	protein coding gene	no	ENST00000435680.5;ENST00000568604.5;ENST00000568547.5;ENST00000567567.5;ENST00000563714.5;ENST00000566981.1;ENST00000565728.5	19.910	20.935	18.629	0.925(8858)	0.984(691)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip	yes
LCP1_LS009	chr13:46148447|46150936:-	LCP1	TOX high mobility group box family member 4	protein coding gene	no	ENST00000398576.6;ENST00000323076.6;ENST00000469227.5	115.874	53.801	10.176	0.956(9162)	0.989(694)	0.935(16247)	non tumor-specific	exon_skip	yes
HTR4_LS012	chr5:148490846|148509456:-	HTR4	5-hydroxytryptamine receptor 4	protein coding gene	no	ENST00000524063.3	0.111	0.080	0.746	0.001(11)	0.01(7)	0.023(396)	non tumor-specific	exon_skip	yes
AHCTF1_LS036	chr1:246900469|246902525:-	AHCTF1	AT-hook containing transcription factor 1	protein coding gene	no	ENST00000366508.5;ENST00000326225.3;ENST00000648844.1	10.957	6.706	4.558	0.766(7339)	0.89(625)	0.903(15702)	non tumor-specific	nAS	yes
PPP1R12A-AS1_LS001	chr12:79935658|79938728:+	PPP1R12A-AS1	PPP1R12A antisense RNA 1	no	no	ENST00000552885.2	0.551	0.218	0.637	0.124(1191)	0.165(116)	0.085(1485)	non tumor-specific	nAS	yes
CRAT_LS034	chr9:129109277|129110483:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	ENST00000458362.5;ENST00000441796.1	6.267	6.936	14.168	0.925(8861)	0.977(686)	0.974(16928)	non tumor-specific	exon_skip	yes
AC004917.1_LS009	chr7:106610463|106615677:-	AC004917.1	-	lncRNA gene	no	ENST00000485282.5	1.422	0.042	0.695	0.006(56)	0.001(1)	0.076(1329)	non tumor-specific	nAS	yes
UN_GCA_LS0014	chr2:162344583|162347578:+	GCA	grancalcin	protein coding gene	no	.	1.513	0.016	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CNN2_LS014	chr19:1032696|1036416:+	CNN2	calponin 2	protein coding gene	no	ENST00000348419.7;ENST00000562075.6;ENST00000348419.7;ENST00000562075.6	3.422	2.757	8.335	0.947(9072)	0.981(689)	0.847(14721)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FCRL2_LS003	chr1:157746899|157748875:-	FCRL2	Fc receptor like B	protein coding gene	no	ENST00000368181.4	0.222	0.736	1.128	0.05(481)	0.047(33)	0.104(1810)	non tumor-specific	exon_skip	yes
UN_CBX6_LS0028	chr22:38866190|38866269:-	CBX6	chromobox 6	protein coding gene	no	.	1.897	1.142	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL157911.1_LS004	chr14:60030378|60091703:-	AL157911.1	-	lncRNA gene	no	ENST00000554123.1	0.475	0.095	0.699	0.002(16)	0.009(6)	0.03(527)	non tumor-specific	nAS	yes
SLC39A5_LS022	chr12:56234986|56235157:+	SLC39A5	solute carrier family 39 member 5	protein coding gene	no	ENST00000481103.5;ENST00000454355.6;ENST00000436633.5;ENST00000266980.8	39.470	111.360	1.000	0.262(2512)	0.348(244)	0.355(6172)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LRRC7_LS014	chr1:69994633|70011797:+	LRRC7	leucine rich repeat containing 7	protein coding gene	no	ENST00000310961.9;ENST00000035383.9;ENST00000415775.2	4.026	0.598	1.085	0.017(159)	0.021(15)	0.159(2768)	non tumor-specific	nAS	yes
UN_PKIG_LS0018	chr20:44536520|44582585:+	PKIG	cAMP-dependent protein kinase inhibitor gamma	protein coding gene	no	.	2.322	2.222	0.000	0.032(302)	0.066(46)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RAB27A_LS0041	chr15:55270284|55290250:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	.	1.522	0.805	0.000	0.004(38)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_LINC01376_LS0004	chr2:19026705|19027330:-	LINC01376	long intergenic non-protein coding RNA 1376	lncRNA gene	no	.	1.068	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DNTTIP1_LS0006	chr20:45792276|45792677:+	DNTTIP1	deoxynucleotidyltransferase terminal interacting protein 1	protein coding gene	no	.	1.989	0.152	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
MAST2_LS019	chr1:46022082|46022910:+	MAST2	microtubule associated serine/threonine kinase 2	protein coding gene	no	ENST00000361297.6;ENST00000372008.6;ENST00000372009.3;ENST00000467367.5	22.328	15.386	30.128	0.972(9312)	0.969(680)	0.977(16978)	non tumor-specific	nAS	yes
MGAM_LS002	chr7:141907868|141945821:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000465654.5	8.994	0.000	0.690	0.001(5)	0(0)	0(2)	non tumor-specific	nAS	yes
AGO1_LS007	chr1:35893810|35894037:+	AGO1	argonaute RISC component 1	protein coding gene	no	ENST00000373206.5;ENST00000373204.5;ENST00000635259.1	11.194	7.357	4.914	0.851(8157)	0.932(654)	0.951(16531)	non tumor-specific	exon_skip	yes
UN_PSAP_LS0163	chr10:71817017|71817324:+	PSAP	prosaposin	protein coding gene	no	.	5.553	2.500	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
YIPF3_LS003	chr6:43512563|43512761:-	YIPF3	Yip1 domain family member 3	protein coding gene	no	ENST00000372422.6;ENST00000510102.5;ENST00000506469.5;ENST00000490447.6;ENST00000503147.1;ENST00000503972.5;ENST00000514627.5;ENST00000512713.5	108.790	75.026	162.371	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL358115.1_LS001	chr1:165891635|165892125:-	AL358115.1	-	lncRNA gene	no	ENST00000626270.1	0.472	0.065	0.718	0.003(29)	0.004(3)	0.024(417)	non tumor-specific	nAS	yes
UN_FAM224A_LS0005	chrY:18329308|18330644:+	FAM224A	family with sequence similarity 224 member A	lncRNA gene	no	.	5.544	1.509	0.000	0.056(540)	0.074(52)	0(0)	non tumor-specific	nAS	no
ZNF559_LS019	chr19:9341184|9350804:+	ZNF559	zinc finger protein 559	protein coding gene	no	ENST00000586255.5	0.029	0.013	0.772	0.133(1272)	0.179(126)	0.184(3199)	non tumor-specific	nAS	yes
UN_NR2F6_LS0013	chr19:17232151|17232243:+	NR2F6	nuclear receptor subfamily 2 group F member 6	protein coding gene	no	.	6.532	1.530	0.000	0.005(46)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HOXC9_LS0008	chr12:53995549|54000212:+	HOXC9	homeobox C9	protein coding gene	no	.	0.924	0.047	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CSK_LS0016	chr15:74798312|74798637:+	CSK	C-terminal Src kinase	protein coding gene	no	.	5.850	8.384	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PAN3_LS0088	chr13:28292511|28293863:+	PAN3	poly(A) specific ribonuclease subunit PAN3	protein coding gene	no	.	2.039	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_SHMT2_LS0033	chr12:57231870|57232465:-	SHMT2	serine hydroxymethyltransferase 2	protein coding gene	no	.	2.170	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
APBB1_LS001	chr11:6395279|6395786:-	APBB1	amyloid beta precursor protein binding family B member 1	protein coding gene	no	ENST00000608435.5	0.053	0.019	1.107	0.127(1218)	0.191(134)	0.29(5035)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AL449266.1_LS0018	chr1:108936397|108937077:-	AL449266.1	-	protein coding gene	no	.	1.324	0.043	0.000	0.007(67)	0.004(3)	0(0)	non tumor-specific	nAS	no
DST_LS100	chr6:56627287|56627999:-	DST	dystonin	protein coding gene	no	ENST00000244364.10;ENST00000421834.6;ENST00000312431.10;ENST00000370788.6;ENST00000361203.7;ENST00000439203.5;ENST00000520645.5;ENST00000370765.10;ENST00000522360.5;ENST00000518935.5	18.452	16.590	7.768	0.694(6646)	0.835(586)	0.914(15890)	non tumor-specific	nAS	yes
WDR54_LS014	chr2:74423982|74424875:+	WDR54	WD repeat domain 54	protein coding gene	no	ENST00000461531.5;ENST00000409791.5;ENST00000348227.4;ENST00000480089.5;ENST00000482880.5;ENST00000468778.5	44.491	14.786	17.653	0.99(9487)	0.984(691)	0.973(16917)	non tumor-specific	alt_3prime;exon_skip	yes
DMXL1_LS002	chr5:119071257|119071555:+	DMXL1	Dmx like 1	protein coding gene	no	ENST00000503802.5	0.570	0.361	1.354	0.582(5574)	0.662(465)	0.69(11986)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FRMD5_LS0019	chr15:43924309|43961421:-	FRMD5	FERM domain containing 5	protein coding gene	no	.	0.872	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADGRL2_LS0082	chr1:81987029|81988200:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	.	1.225	0.762	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GBA_LS0005	chr1:155235121|155235195:-	GBA	glucosylceramidase beta	protein coding gene	no	.	11.599	3.390	0.000	0.03(290)	0.021(15)	0(0)	non tumor-specific	alt_3prime	no
ZNF720_LS022	chr16:31723353|31753766:+	ZNF720	zinc finger protein 720	protein coding gene	no	ENST00000529943.6;ENST00000316491.13;ENST00000534277.5;ENST00000530881.5;ENST00000529515.1	15.685	8.613	12.465	0.981(9399)	0.993(697)	0.977(16976)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_LHFPL2_LS0005	chr5:78489153|78494362:-	LHFPL2	LHFPL tetraspan subfamily member 2	protein coding gene	no	.	2.140	0.652	0.000	0.047(455)	0.05(35)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC113423.2_UP_LS0014	chr5:174579511|174589867:-	AC113423.2	-	lncRNA gene	no	.	1.876	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDXDC1_LS0063	chr16:15035581|15036016:+	PDXDC1	pyridoxal dependent decarboxylase domain containing 1	protein coding gene	no	.	4.620	2.343	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_C7orf50_LS0114	chr7:1125746|1129956:+	C7orf50	chromosome 7 open reading frame 50	protein coding gene	no	.	1.817	0.419	0.000	0.028(271)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_ELOA_LS0021	chr1:23760863|23761031:-	ELOA	elongin A	protein coding gene	no	.	1.239	0.209	0.000	0.087(830)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_TSC22D4_LS0030	chr7:100466956|100467014:+	TSC22D4	TSC22 domain family member 4	protein coding gene	no	.	16.826	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBCK_LS0033	chr4:106244740|106247139:-	TBCK	TBC1 domain containing kinase	protein coding gene	no	.	2.070	1.046	0.000	0.029(280)	0.03(21)	0(0)	non tumor-specific	alt_3prime	no
SOX6_LS007	chr11:16046657|16049755:-	SOX6	SRY-box transcription factor 6	protein coding gene	no	.;.	1.444	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
APIP_LS001	chr11:34856642|34860921:-	APIP	APAF1 interacting protein	protein coding gene	no	ENST00000532428.6	0.145	0.000	0.680	0.001(8)	0(0)	0.003(44)	non tumor-specific	mutex_exons	yes
UN_TMEM156_LS0016	chr4:38998909|39025635:-	TMEM156	transmembrane protein 156	protein coding gene	no	.	1.930	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
ARMCX3_LS015	chrX:101623893|101624480:+	ARMCX3	armadillo repeat containing X-linked 3	protein coding gene	no	ENST00000479298.5	0.305	0.247	0.611	0.465(4456)	0.601(422)	0.024(423)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM241_LS022	chr18:23373763|23376827:-	TMEM241	transmembrane protein 241	protein coding gene	no	ENST00000581444.5;ENST00000477053.5;ENST00000542162.5;ENST00000580025.1	0.123	0.098	0.862	0.526(5043)	0.395(277)	0.388(6745)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MARK4_LS0158	chr19:45273786|45280460:-	MARK4	microtubule affinity regulating kinase 4	protein coding gene	no	.	1.576	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MS4A14_LS012	chr11:60404666|60405889:+	MS4A14	membrane spanning 4-domains A14	protein coding gene	no	ENST00000530662.5	0.911	0.000	0.696	0.003(25)	0(0)	0.034(597)	non tumor-specific	exon_skip	yes
DHCR7_LS020	chr11:71447734|71448290:-	DHCR7	7-dehydrocholesterol reductase	protein coding gene	no	ENST00000355527.7;ENST00000527316.5;ENST00000529990.5	12.183	10.160	10.694	0.974(9334)	0.99(695)	0.971(16876)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_LINC01376_LS0041	chr2:19346748|19347895:-	LINC01376	long intergenic non-protein coding RNA 1376	lncRNA gene	no	.	1.491	0.092	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0408	chr14:106627695|106639230:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	28.254	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
NIN_LS002	chr14:50726066|50729523:-	NIN	ninein	protein coding gene	no	ENST00000245441.9;ENST00000476352.5;ENST00000530997.6;ENST00000382043.8;ENST00000389869.7;ENST00000324330.13;ENST00000382041.7	24.264	10.164	15.224	0.972(9309)	0.973(683)	0.978(17002)	non tumor-specific	alt_3prime;exon_skip	yes
PPRC1_LS013	chr10:102144307|102147114:+	PPRC1	PPARG related coactivator 1	protein coding gene	no	.;.;.	1.089	0.207	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PAGE2_UP_LS0001	chrX:55029672|55076034:+	PAGE2	PAGE family member 2	protein coding gene	no	.	2.565	0.052	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ASIP_LS0007	chr20:34216299|34222537:+	ASIP	par-3 family cell polarity regulator	protein coding gene	no	.	2.431	0.184	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLDN11_LS006	chr3:170434963|170437251:+	CLDN11	claudin 11	protein coding gene	no	ENST00000643053.1;ENST00000477531.3	0.830	0.404	2.365	0.053(509)	0.138(97)	0.585(10172)	non tumor-specific	nAS	yes
UN_KRT7_LS0105	chr12:52245459|52245553:-	KRT7	keratin 7	protein coding gene	no	.	20.533	0.496	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP3S1_LS0019	chr5:115913697|115913821:-	AP3S1	adaptor related protein complex 3 subunit sigma 1	protein coding gene	no	.	1.773	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEPT9_LS0014	chr17:77294571|77294774:+	SEPT9	septin 9	protein coding gene	yes	.	1.372	0.001	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_UBE2H_LS0020	chr7:129832978|129833048:+	UBE2H	ubiquitin conjugating enzyme E2 H	protein coding gene	no	.	2.689	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SETD6P1_UP_LS0036	chr2:108469045|108511930:-	SETD6P1	SET domain containing 6 pseudogene 1	pseudogene	no	.	1.482	0.408	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC017104.3_UP_LS0011	chr2:231412925|231413976:+	AC017104.3	-	lncRNA gene	no	.	2.455	0.336	0.000	0.015(145)	0.013(9)	0(0)	non tumor-specific	nAS	no
TCF4_LS070	chr18:55585352|55631298:-	TCF4	transcription factor 7 like 2	protein coding gene	yes	ENST00000569357.4	4.430	0.000	0.798	0(3)	0(0)	0(7)	non tumor-specific	nAS	yes
DSG1_LS007	chr18:31333723|31334017:+	DSG1	desmoglein 1	protein coding gene	no	ENST00000257192.4	13.118	34.118	2.469	0.099(945)	0.229(161)	0.221(3837)	non tumor-specific	exon_skip	yes
UN_MPST_LS0006	chr22:37019872|37024200:+	MPST	mercaptopyruvate sulfurtransferase	protein coding gene	yes	.	1.396	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
FIG4_LS027	chr6:109796851|109825088:+	FIG4	FIG4 phosphoinositide 5-phosphatase	protein coding gene	no	ENST00000230124.7	45.743	27.434	36.424	0.979(9381)	0.989(694)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ITIH2_LS014	chr10:7727828|7729952:+	ITIH2	inter-alpha-trypsin inhibitor heavy chain 2	protein coding gene	no	ENST00000358415.8;ENST00000379587.4	72.137	111.346	1.620	0.133(1278)	0.278(195)	0.167(2895)	non tumor-specific	exon_skip	yes
FP565260.1_LS010	chr21:5137474|5139698:-	FP565260.1	-	protein coding gene	no	ENST00000617716.3;ENST00000623011.1	33.484	15.459	4.959	0.986(9449)	0.99(695)	0.928(16131)	non tumor-specific	nAS	yes
AJ006995.1_LS002	chr21:27978122|27985040:+	AJ006995.1	-	lncRNA gene	no	ENST00000433344.1	1.078	0.000	0.826	0.001(5)	0(0)	0.002(39)	non tumor-specific	nAS	yes
UN_IKBKE_LS0008	chr1:206476843|206477749:+	IKBKE	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein coding gene	yes	.	1.666	0.581	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ZNF292_LS011	chr6:87215962|87260075:+	ZNF292	zinc finger protein 292	protein coding gene	yes	ENST00000496806.2	0.374	0.154	0.561	0.123(1178)	0.118(83)	0.002(40)	non tumor-specific	nAS	yes
LINC01347_LS016	chr1:243092194|243092479:-	LINC01347	long intergenic non-protein coding RNA 1347	pseudogene	no	ENST00000627498.2	0.364	0.080	0.692	0.056(535)	0.031(22)	0.096(1677)	non tumor-specific	nAS	yes
UN_DAGLA_LS0026	chr11:61726082|61726676:+	DAGLA	diacylglycerol lipase alpha	protein coding gene	no	.	1.329	0.168	0.000	0.015(142)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
SEMA4D_LS019	chr9:89392536|89393562:-	SEMA4D	semaphorin 4D	protein coding gene	no	ENST00000339861.8;ENST00000420987.5;ENST00000455551.6;ENST00000429836.5;ENST00000537934.5;ENST00000450295.5;ENST00000438547.6;ENST00000356444.6;ENST00000422704.6	24.597	18.103	13.348	0.868(8316)	0.905(635)	0.96(16683)	non tumor-specific	alt_5prime	yes
UN_AC108467.2_UP_LS0008	chr4:44867501|44871806:+	AC108467.2	-	pseudogene	no	.	10.142	0.430	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDH16_LS012	chr16:66910502|66911182:-	CDH16	cadherin 16	protein coding gene	no	ENST00000299752.8;ENST00000568632.5;ENST00000570262.5;ENST00000568698.5;ENST00000299752.8;ENST00000568632.5;ENST00000570262.5;ENST00000568698.5	90.731	334.888	1.568	0.273(2618)	0.377(265)	0.22(3817)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_EPS8_LS0035	chr12:15682972|15705206:-	EPS8	epidermal growth factor receptor pathway substrate 8	protein coding gene	yes	.	1.712	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_THAP9_LS0007	chr4:82901793|82904736:+	THAP9	THAP domain containing 9	protein coding gene	no	.	1.070	0.061	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_IGLV2-5_UP_LS0001	chr22:22698367|22850601:+	IGLV2-5	immunoglobulin lambda variable 2-5 (pseudogene)	no	no	.	116.020	15.307	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF130_LS013	chr5:180040647|180071456:-	RNF130	ring finger protein 130	protein coding gene	no	ENST00000522208.6;ENST00000521389.5;ENST00000261947.4;ENST00000520911.5	25.035	19.905	86.315	0.946(9059)	0.967(679)	0.979(17009)	non tumor-specific	nAS	yes
PCTP_LS006	chr17:55771201|55773656:+	PCTP	phosphatidylcholine transfer protein	protein coding gene	no	ENST00000417982.6	0.526	0.898	0.888	0.263(2522)	0.362(254)	0.418(7271)	non tumor-specific	alt_3prime;exon_skip	yes
KIAA0100_LS049	chr17:28643659|28644058:-	KIAA0100	KIAA0100	protein coding gene	no	ENST00000528896.6;ENST00000544884.5;ENST00000389003.7;ENST00000580882.5;ENST00000577417.5	29.423	26.047	18.750	0.909(8708)	0.946(664)	0.973(16914)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_UBTD1_LS0033	chr10:97543690|97553820:-	UBTD1	ubiquitin domain containing 1	protein coding gene	no	.	3.281	0.660	0.000	0.028(273)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ADAM28_LS0012	chr8:24321289|24322602:+	ADAM28	ADAM metallopeptidase domain 28	protein coding gene	yes	.	1.877	0.356	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LPAR2_LS011	chr19:19627346|19628092:-	LPAR2	lysophosphatidic acid receptor 2	protein coding gene	no	ENST00000586703.1	0.414	0.208	0.687	0.123(1180)	0.098(69)	0.073(1270)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZSWIM6_LS006	chr5:61525976|61526250:+	ZSWIM6	zinc finger SWIM-type containing 6	protein coding gene	no	ENST00000252744.5	12.653	9.571	10.082	0.871(8346)	0.946(664)	0.972(16893)	non tumor-specific	nAS	yes
UN_AC104417.1_UP_LS0005	chr8:142189560|142194521:-	AC104417.1	-	pseudogene	no	.	3.436	0.484	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
AP000857.2_LS001	chr11:84936741|84955340:+	AP000857.2	-	lncRNA gene	no	ENST00000532123.1	0.191	0.006	0.630	0.003(27)	0.003(2)	0.004(70)	non tumor-specific	nAS	yes
MTCL1_LS040	chr18:8821498|8824699:+	MTCL1	microtubule crosslinking factor 1	protein coding gene	no	ENST00000306329.15;ENST00000517570.5;ENST00000359865.7;ENST00000400050.7;ENST00000518815.1;ENST00000306329.15;ENST00000517570.5;ENST00000359865.7;ENST00000400050.7;ENST00000518815.1	10.817	4.212	3.008	0.674(6462)	0.571(401)	0.816(14187)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_C17orf53_LS0015	chr17:44154664|44154749:+	C17orf53	homologous recombination factor with OB-fold	protein coding gene	no	.	2.993	0.208	0.000	0.033(316)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
ALDH1L2_LS025	chr12:105074005|105084389:-	ALDH1L2	aldehyde dehydrogenase 1 family member L2	protein coding gene	no	ENST00000258494.13;ENST00000552270.1;ENST00000552427.1	0.676	0.433	1.290	0.414(3964)	0.425(298)	0.511(8888)	non tumor-specific	nAS	yes
DENND2D_LS012	chr1:111195828|111195916:-	DENND2D	DENN domain containing 2D	protein coding gene	yes	ENST00000473682.5	0.074	0.050	1.980	0.51(4883)	0.604(424)	0.612(10639)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_CARM1_LS0055	chr19:10922405|10922582:+	CARM1	coactivator associated arginine methyltransferase 1	protein coding gene	no	.	17.031	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KRT9_UP_LS0060	chr17:41586589|41612234:-	KRT9	keratin 9	protein coding gene	no	.	2458.852	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MLLT10_LS008	chr10:21538912|21556643:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	ENST00000377100.7	7.613	3.790	3.602	0.937(8974)	0.933(655)	0.912(15861)	non tumor-specific	alt_3prime;exon_skip	yes
SPTBN4_LS014	chr19:40506386|40512606:+	SPTBN4	spectrin beta, non-erythrocytic 4	protein coding gene	no	ENST00000595535.5;ENST00000392025.5;ENST00000352632.7;ENST00000598249.5;ENST00000338932.7	1.210	0.730	1.870	0.121(1158)	0.094(66)	0.695(12083)	non tumor-specific	exon_skip	yes
UN_AP5Z1_LS0024	chr7:4787776|4788127:+	AP5Z1	adaptor related protein complex 5 subunit zeta 1	protein coding gene	no	.	7.669	0.019	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AP3D1_LS0096	chr19:2130511|2132471:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	.	16.386	2.450	0.000	0.016(156)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_SYNC_LS0010	chr1:32696044|32703551:-	SYNC	syncoilin, intermediate filament protein	protein coding gene	no	.	0.844	0.326	0.000	0.005(52)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
RAP1B_LS040	chr12:68621491|68624671:+	RAP1B	RAP1B, member of RAS oncogene family	protein coding gene	no	ENST00000538877.5	0.010	0.014	0.634	0.122(1165)	0.113(79)	0.062(1084)	non tumor-specific	exon_skip;intron_retention	yes
TAF2_LS023	chr8:119791459|119793366:-	TAF2	TATA-box binding protein associated factor 2	protein coding gene	no	ENST00000378164.6;ENST00000523904.1	17.791	9.557	7.686	0.907(8687)	0.969(680)	0.951(16528)	non tumor-specific	exon_skip	yes
MEGF11_LS004	chr15:65902537|65906085:-	MEGF11	multiple EGF like domains 11	protein coding gene	no	ENST00000478721.5;ENST00000490495.5;ENST00000489275.3	0.104	0.062	1.035	0.061(586)	0.024(17)	0.07(1223)	non tumor-specific	exon_skip	yes
UN_GUCY1A1_LS0011	chr4:155668589|155669806:+	GUCY1A1	guanylate cyclase 1 soluble subunit alpha 1	protein coding gene	no	.	0.693	0.358	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
HERC1_LS081	chr15:63747083|63747724:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6;ENST00000560519.1	3.019	2.837	3.455	0.632(6058)	0.823(578)	0.881(15309)	non tumor-specific	exon_skip	yes
ZCCHC4_LS010	chr4:25351689|25352074:+	ZCCHC4	zinc finger CCHC-type containing 4	protein coding gene	no	ENST00000505451.5	0.171	0.115	0.707	0.458(4386)	0.496(348)	0.237(4112)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PIBF1_LS0043	chr13:72931267|72998822:+	PIBF1	progesterone immunomodulatory binding factor 1	protein coding gene	no	.	4.118	0.034	0.000	0.01(99)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DEFB124_LS0021	chr20:31472053|31472956:-	DEFB124	defensin beta 124	protein coding gene	no	.	3.177	0.550	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MUC17_LS055	chr7:101048972|101049324:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	ENST00000379439.3;ENST00000306151.8	50.187	35.075	1.270	0.082(783)	0.073(51)	0.059(1028)	non tumor-specific	alt_3prime;exon_skip	yes
DICER1_LS032	chr14:95133503|95136623:-	DICER1	dicer 1, ribonuclease III	protein coding gene	yes	ENST00000527414.5	0.048	0.006	0.674	0.079(756)	0.115(81)	0.024(418)	non tumor-specific	nAS	yes
BAIAP2L2_LS023	chr22:38108341|38109133:-	BAIAP2L2	BAR/IMD domain containing adaptor protein 2 like 2	protein coding gene	no	ENST00000381669.7;ENST00000332536.9	24.657	16.102	1.994	0.345(3307)	0.342(240)	0.767(13335)	non tumor-specific	nAS	yes
ATAD5_LS023	chr17:30894150|30894564:+	ATAD5	ATPase family AAA domain containing 5	protein coding gene	no	ENST00000321990.4	8.123	1.720	3.086	0.658(6303)	0.299(210)	0.874(15198)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PDGFA_LS0003	chr7:497893|497986:-	PDGFA	platelet derived growth factor subunit A	protein coding gene	yes	.	39.171	2.635	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_COL5A1_LS0033	chr9:134768463|134769255:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	.	11.964	1.155	0.000	0.008(75)	0.03(21)	0(0)	non tumor-specific	nAS	no
ABCD4_LS053	chr14:74299675|74302875:-	ABCD4	ATP binding cassette subfamily D member 4	protein coding gene	no	ENST00000553745.5;ENST00000469672.5;ENST00000556119.5;ENST00000555617.5;ENST00000556971.1;ENST00000493427.1	0.395	0.255	2.282	0.779(7467)	0.883(620)	0.855(14854)	non tumor-specific	exon_skip;mutex_exons	yes
TMEM154_LS001	chr4:152628561|152640928:-	TMEM154	transmembrane protein 154	protein coding gene	no	ENST00000304385.7;ENST00000510252.1	4.709	3.332	2.425	0.767(7351)	0.845(593)	0.685(11913)	non tumor-specific	alt_3prime	yes
CFAP65_LS010	chr2:219010704|219010805:-	CFAP65	cilia and flagella associated protein 65	protein coding gene	no	ENST00000341552.9;ENST00000453220.5	3.396	2.187	1.258	0.044(417)	0.118(83)	0.095(1657)	non tumor-specific	nAS	yes
UN_HIST2H4A_LS0004	chr1:149833864|149839595:+	HIST2H4A	H4 clustered histone 14	protein coding gene	no	.	1.060	0.245	0.000	0.04(383)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SRPK2_LS007	chr7:105125874|105126248:-	SRPK2	SRSF protein kinase 2	protein coding gene	no	ENST00000465072.5;ENST00000474770.1	8.306	3.580	1.495	0.846(8103)	0.828(581)	0.688(11961)	non tumor-specific	exon_skip;mutex_exons	yes
KIAA1549L_LS003	chr11:33544336|33544767:+	KIAA1549L	KIAA1549 like	protein coding gene	no	ENST00000321505.8	0.344	0.076	0.889	0.186(1780)	0.048(34)	0.098(1706)	non tumor-specific	alt_5prime	yes
DCTN2_LS018	chr12:57534392|57535056:-	DCTN2	dynactin subunit 2	protein coding gene	no	ENST00000548949.5	1.472	0.365	1.503	0.831(7966)	0.838(588)	0.795(13826)	non tumor-specific	alt_3prime	yes
UN_LINC02238_UP_LS0004	chr1:73499487|73505145:+	LINC02238	long intergenic non-protein coding RNA 2238	lncRNA gene	no	.	7.836	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
PDE1A_LS015	chr2:182240292|182264301:-	PDE1A	phosphodiesterase 1A	protein coding gene	no	ENST00000435564.5;ENST00000409365.5;ENST00000351439.9;ENST00000410103.1;ENST00000462938.5;ENST00000482782.5;ENST00000495511.1	11.168	29.656	8.402	0.631(6048)	0.906(636)	0.883(15355)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CROCC_LS0137	chr1:16961130|16962751:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	0.878	0.055	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
COL6A6_LS008	chr3:130581904|130581990:+	COL6A6	collagen type VI alpha 6 chain	protein coding gene	no	ENST00000358511.10;ENST00000506143.5;ENST00000511332.1	4.256	1.706	1.479	0.062(594)	0.272(191)	0.233(4043)	non tumor-specific	nAS	yes
JMJD1C_LS038	chr10:63219983|63264651:-	JMJD1C	jumonji domain containing 1C	protein coding gene	no	ENST00000399262.6;ENST00000542921.5;ENST00000469152.5;ENST00000633035.1	5.804	4.740	2.860	0.703(6736)	0.883(620)	0.836(14535)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LAS1L_LS0020	chrX:65522313|65522431:-	LAS1L	LAS1 like ribosome biogenesis factor	protein coding gene	no	.	7.289	3.084	0.000	0.02(196)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TFAP4_LS004	chr16:4260595|4272658:-	TFAP4	transcription factor AP-4	protein coding gene	no	ENST00000574639.1	0.050	0.090	0.782	0.567(5428)	0.41(288)	0.313(5437)	non tumor-specific	alt_5prime	yes
BRAF_LS001	chr7:140726516|140734617:-	BRAF	B-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000496384.7;ENST00000642875.1;ENST00000644969.1	8.488	4.998	4.435	0.897(8596)	0.933(655)	0.943(16384)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MBNL3_LS0027	chrX:132440314|132441403:-	MBNL3	muscleblind like splicing regulator 3	protein coding gene	no	.	0.972	0.371	0.000	0.008(77)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_GAA_LS0008	chr17:80104966|80105060:-	GAA	glucosidase alpha, acid	protein coding gene	no	.	2.992	2.471	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GOLGA8B_LS0013	chr15:34533484|34534054:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	.	3.313	1.079	0.000	0.031(293)	0.014(10)	0(0)	non tumor-specific	nAS	no
AL121935.2_LS001	chr6:167126645|167127149:-	AL121935.2	-	lncRNA gene	no	ENST00000647254.1	3.383	0.312	0.000	0.007(71)	0.004(3)	0(0)	non tumor-specific	nAS	yes
DCST2_LS003	chr1:155023457|155023553:-	DCST2	DC-STAMP domain containing 2	protein coding gene	no	ENST00000485982.5	0.705	0.062	0.720	0.002(21)	0.001(1)	0.091(1586)	non tumor-specific	exon_skip	yes
FKBP15_LS005	chr9:113171706|113173453:-	FKBP15	FKBP prolyl isomerase 15	protein coding gene	no	ENST00000446284.5;ENST00000238256.7	48.137	27.163	37.865	0.989(9471)	0.993(697)	0.979(17020)	non tumor-specific	alt_3prime	yes
ZFAND6_LS029	chr15:80098578|80120328:+	ZFAND6	zinc finger AN1-type containing 6	protein coding gene	no	ENST00000261749.10;ENST00000618205.4;ENST00000560470.5;ENST00000559775.5;ENST00000560392.5;ENST00000558272.5;ENST00000558997.5;ENST00000616533.4	11.738	9.253	16.661	0.98(9386)	0.993(697)	0.978(16994)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CEP131_LS0019	chr17:81199829|81200329:-	CEP131	centrosomal protein 131	protein coding gene	no	.	2.443	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NPHP3-ACAD11_LS0063	chr3:132675680|132675868:+	NPHP3-ACAD11	NPHP3-ACAD11 readthrough (NMD candidate)	protein coding gene	no	.	0.865	0.006	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC131097.1_UP_LS0158	chr2:241807833|241807916:-	AC131097.1	-	lncRNA gene	no	.	1.369	0.915	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
MOB2_LS005	chr11:1480885|1486447:-	MOB2	MOB kinase activator 2	protein coding gene	no	ENST00000329957.6	0.501	6.301	5.400	0.49(4699)	0.692(486)	0.759(13185)	non tumor-specific	nAS	yes
UN_FAF2_LS0008	chr5:176479256|176488951:+	FAF2	Fas associated factor family member 2	protein coding gene	no	.	8.141	1.141	0.000	0.012(115)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_DNAH14_LS0007	chr1:224955098|224960198:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	.	3.235	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ANO5_LS027	chr11:22276199|22277786:+	ANO5	anoctamin 5	protein coding gene	no	ENST00000532043.1	0.170	0.029	0.653	0.027(262)	0.037(26)	0.033(574)	non tumor-specific	nAS	yes
UN_KLC2_LS0021	chr11:66263880|66264704:-	KLC2	kinesin light chain 2	protein coding gene	no	.	2.121	0.683	0.000	0.008(78)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KIAA2012_LS0008	chr2:202115059|202141764:-	KIAA2012	KIAA2012	protein coding gene	no	.	2.544	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
SERPINB4_LS001	chr18:63638123|63639185:-	SERPINB4	serpin family B member 4	protein coding gene	no	ENST00000341074.9;ENST00000413673.5	22.372	3.286	1.518	0.246(2354)	0.155(109)	0.188(3269)	non tumor-specific	alt_5prime;exon_skip	yes
AC005884.1_LS001	chr17:61034774|61036213:-	AC005884.1	-	lncRNA gene	no	ENST00000588604.1	0.911	0.734	1.341	0.097(927)	0.372(261)	0.523(9099)	non tumor-specific	nAS	yes
CHST15_LS003	chr10:124021412|124038515:-	CHST15	carbohydrate sulfotransferase 15	protein coding gene	no	ENST00000435907.5;ENST00000346248.7;ENST00000628426.1;ENST00000476765.1	22.665	14.975	19.790	0.969(9282)	0.994(698)	0.967(16806)	non tumor-specific	exon_skip	yes
UN_AC006453.1_UP_LS0193	chr2:90070168|90115331:-	AC006453.1	-	pseudogene	no	.	22.601	0.918	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAIM2_LS020	chr12:49901325|49902826:-	FAIM2	Fas apoptotic inhibitory molecule 2	protein coding gene	no	ENST00000547871.1	0.235	0.032	0.991	0.059(569)	0.007(5)	0.067(1165)	non tumor-specific	alt_3prime	yes
UN_CASP8_LS0067	chr2:201283582|201283830:-	CASP8	caspase 8	protein coding gene	yes	.	2.162	0.885	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPX8_LS004	chr5:55160243|55160994:+	GPX8	glutathione peroxidase 8 (putative)	protein coding gene	no	ENST00000515370.1;ENST00000515370.1	0.213	0.164	1.203	0.601(5760)	0.682(479)	0.438(7616)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL355102.2_LS0160	chr14:96243240|96243454:+	AL355102.2	-	protein coding gene	no	.	25.932	2.779	0.000	0.003(31)	0.009(6)	0(0)	non tumor-specific	nAS	no
CCDC136_LS011	chr7:128794768|128801186:+	CCDC136	coiled-coil domain containing 136	protein coding gene	yes	ENST00000485998.6;ENST00000378685.8;ENST00000464832.5;ENST00000487361.5;ENST00000297788.8	2.325	4.549	3.520	0.192(1836)	0.177(124)	0.842(14627)	non tumor-specific	exon_skip	yes
UN_CIC_LS0072	chr19:42291261|42291287:-	CIC	capicua transcriptional repressor	protein coding gene	yes	.	3.254	0.535	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CDK19_LS0033	chr6:110660783|110661461:+	CDK19	cyclin dependent kinase 19	protein coding gene	no	.	5.148	3.244	0.000	0.01(95)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TXNDC11_LS0044	chr16:11721670|11725797:-	TXNDC11	thioredoxin domain containing 11	protein coding gene	no	.	1.525	0.456	0.000	0.011(110)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
TRIO_LS034	chr5:14397154|14398880:+	TRIO	trio Rho guanine nucleotide exchange factor	protein coding gene	yes	ENST00000344204.8;ENST00000512070.6;ENST00000509967.6;ENST00000513206.5;ENST00000515144.5	20.154	11.497	12.913	0.931(8917)	0.939(659)	0.965(16781)	non tumor-specific	alt_3prime;exon_skip	yes
ATF3_LS001	chr1:212565483|212615018:+	ATF3	activating transcription factor 3	protein coding gene	yes	ENST00000366981.8;ENST00000366987.6	0.240	0.180	0.738	0.059(569)	0.09(63)	0.061(1058)	non tumor-specific	nAS	yes
UN_TGS1_LS0017	chr8:55805036|55824581:+	TGS1	trimethylguanosine synthase 1	protein coding gene	no	.	3.584	0.404	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AC009654.1_LS002	chr15:60074935|60118194:-	AC009654.1	-	lncRNA gene	no	ENST00000560503.2	0.438	0.000	1.121	0.014(131)	0.001(1)	0.007(128)	non tumor-specific	nAS	yes
RARS2_LS005	chr6:87516880|87518169:-	RARS2	arginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000369536.9	102.806	61.336	64.884	0.997(9548)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PMFBP1_LS021	chr16:72139399|72140412:-	PMFBP1	polyamine modulated factor 1 binding protein 1	protein coding gene	no	ENST00000537465.5;ENST00000237353.14;ENST00000355636.10;ENST00000379073.9;ENST00000537392.1	2.264	0.146	1.022	0.046(442)	0.009(6)	0.342(5949)	non tumor-specific	nAS	yes
MRVI1_LS047	chr11:10652182|10693820:-	MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein coding gene	yes	ENST00000532037.5	0.537	0.085	0.911	0.009(82)	0.014(10)	0.142(2472)	non tumor-specific	exon_skip	yes
UN_PFN1_LS0089	chr17:4948419|4948479:+	PFN1	profilin 1	protein coding gene	yes	.	12.307	0.423	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
RFX3_LS022	chr9:3395596|3490279:-	RFX3	regulatory factor X3	protein coding gene	no	ENST00000382004.7	0.103	0.106	0.668	0.099(946)	0.132(93)	0.086(1490)	non tumor-specific	exon_skip	yes
UN_ALPK1_LS0042	chr4:112427665|112429131:+	ALPK1	alpha kinase 1	protein coding gene	no	.	1.864	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
KDM3B_LS015	chr5:138398392|138399860:+	KDM3B	lysine demethylase 3B	protein coding gene	yes	ENST00000314358.9;ENST00000510866.5;ENST00000542866.2;ENST00000507996.5;ENST00000504095.1	51.343	35.020	37.250	0.98(9393)	0.99(695)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL360093.1_UP_LS0001	chr1:219228923|219274005:-	AL360093.1	-	lncRNA gene	no	.	3.354	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_M6PR_LS0019	chr12:8946405|8949307:-	M6PR	mannose-6-phosphate receptor, cation dependent	protein coding gene	no	.	5.132	0.765	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
VDAC3_LS004	chr8:42393884|42394210:+	VDAC3	voltage dependent anion channel 3	protein coding gene	no	ENST00000518563.5;ENST00000522069.5;ENST00000522572.5;ENST00000519072.5;ENST00000521348.5;ENST00000518495.5;ENST00000521158.5;ENST00000022615.8	65.844	43.656	79.814	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
NFIX_LS026	chr19:13094985|13098688:+	NFIX	nuclear factor I X	protein coding gene	no	ENST00000358552.7	0.526	0.000	0.649	0(1)	0(0)	0.037(636)	non tumor-specific	nAS	yes
AC011447.2_LS001	chr19:20131947|20132461:-	AC011447.2	-	pseudogene	no	ENST00000592921.1	0.495	0.000	0.704	0.001(5)	0(0)	0.002(29)	non tumor-specific	nAS	yes
CD19_LS011	chr16:28937136|28937271:+	CD19	CD19 molecule	protein coding gene	no	ENST00000538922.5;ENST00000324662.7;ENST00000565089.5;ENST00000567541.5;ENST00000567368.1	17.585	3.017	1.515	0.354(3396)	0.306(215)	0.541(9403)	non tumor-specific	alt_5prime	yes
C8A_LS004	chr1:56876209|56881445:+	C8A	complement C8 alpha chain	protein coding gene	no	ENST00000361249.3	70.444	101.611	0.880	0.05(477)	0.09(63)	0.05(875)	non tumor-specific	exon_skip	yes
SLC7A4_LS005	chr22:21031852|21032531:-	SLC7A4	solute carrier family 7 member 4	protein coding gene	no	ENST00000382932.2	1.829	0.656	0.956	0.36(3453)	0.483(339)	0.225(3918)	non tumor-specific	alt_3prime;exon_skip	yes
EPB41L4A_LS007	chr5:112169105|112170301:-	EPB41L4A	erythrocyte membrane protein band 4.1 like 4A	protein coding gene	no	ENST00000507810.5;ENST00000621003.4;ENST00000261486.5	11.386	10.315	10.317	0.74(7086)	0.937(658)	0.925(16077)	non tumor-specific	alt_5prime	yes
UN_MTND6P9_UP_LS0060	chr2:155999790|156004606:-	MTND6P9	MT-ND6 pseudogene 9	pseudogene	no	.	2.288	0.302	0.000	0.039(377)	0.017(12)	0(0)	non tumor-specific	nAS	no
SLC38A1_LS003	chr12:46189071|46197720:-	SLC38A1	solute carrier family 38 member 1	protein coding gene	no	ENST00000398637.9;ENST00000549049.5;ENST00000439706.5;ENST00000546893.5;ENST00000398637.9;ENST00000549049.5;ENST00000439706.5;ENST00000546893.5	32.592	16.055	8.341	0.93(8906)	0.96(674)	0.942(16382)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
STRADA_LS021	chr17:63713527|63726638:-	STRADA	STE20 related adaptor alpha	protein coding gene	yes	ENST00000447001.8	0.055	0.050	0.638	0.378(3624)	0.4(281)	0.017(299)	non tumor-specific	exon_skip	yes
UN_ANKRD10_LS0002	chr13:110879562|110879853:+	ANKRD10	ankyrin repeat domain 10	protein coding gene	no	.	1.015	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CENPE_LS047	chr4:103194441|103194603:-	CENPE	centromere protein E	protein coding gene	no	ENST00000265148.7;ENST00000380026.7;ENST00000611174.4;ENST00000503705.5;ENST00000514974.1	3.852	0.845	0.856	0.351(3361)	0.08(56)	0.213(3695)	non tumor-specific	nAS	yes
NBPF19_LS062	chr1:149528547|149529174:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000621744.4;ENST00000612881.4;ENST00000369227.7	0.116	0.036	0.000	0.297(2844)	0.352(247)	0(0)	non tumor-specific	nAS	yes
PDLIM5_LS009	chr4:94573393|94575616:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	ENST00000317968.8;ENST00000627587.2;ENST00000510099.5	32.221	31.049	13.415	0.965(9241)	0.987(693)	0.968(16832)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CNNM3-DT_LS001	chr2:96812489|96813494:-	CNNM3-DT	CNNM3 divergent transcript	lncRNA gene	no	ENST00000608609.1	2.309	1.673	2.130	0.756(7243)	0.783(550)	0.839(14575)	non tumor-specific	nAS	yes
UN_MPG_LS0026	chr16:81826|81884:-	MPG	N-methylpurine DNA glycosylase	protein coding gene	no	.	42.460	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HMGCL_LS016	chr1:23817583|23820510:-	HMGCL	3-hydroxy-3-methylglutaryl-CoA lyase	protein coding gene	no	ENST00000374490.7;ENST00000436439.6;ENST00000374487.6;ENST00000509389.5;ENST00000513148.1	41.086	56.932	42.034	0.995(9537)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
DBF4B_LS001	chr17:44708839|44709304:+	DBF4B	DBF4 zinc finger B	protein coding gene	no	ENST00000393547.6;ENST00000528766.5;ENST00000528353.5;ENST00000315005.7;ENST00000526924.5	1.161	0.384	3.009	0.844(8086)	0.799(561)	0.908(15791)	non tumor-specific	exon_skip	yes
UN_FKBP4_LS0036	chr12:2800504|2801150:-	FKBP4	FKBP prolyl isomerase 4	protein coding gene	no	.	3.311	0.279	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NINL_LS0093	chr20:25526598|25537739:-	NINL	ninein like	protein coding gene	yes	.	1.321	0.299	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	nAS	no
SYNE2_LS104	chr14:64167387|64167495:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000394768.6;ENST00000555612.5;ENST00000553289.5;ENST00000556342.1	25.398	28.229	25.606	0.92(8815)	0.977(686)	0.967(16810)	non tumor-specific	nAS	yes
AGPAT3_LS009	chr21:43925451|43959634:+	AGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein coding gene	no	ENST00000398063.6	0.039	0.336	1.391	0.413(3954)	0.561(394)	0.154(2674)	non tumor-specific	exon_skip	yes
UN_PDE1A_UP_LS0008	chr2:182858833|182916600:-	PDE1A	phosphodiesterase 1A	protein coding gene	no	.	0.881	0.017	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
NHLRC3_LS011	chr13:39039711|39047040:+	NHLRC3	NHL repeat containing 3	protein coding gene	no	.;.	2.695	0.321	0.000	0.026(251)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SLC39A1_LS012	chr1:153963703|153968084:-	SLC39A1	solute carrier family 39 member 1	protein coding gene	yes	ENST00000617697.4	0.033	0.052	0.657	0.094(900)	0.073(51)	0.015(254)	non tumor-specific	alt_5prime	yes
UN_RNU6ATAC28P_UP_LS0048	chr14:83396113|83419530:+	RNU6ATAC28P	RNA, U6atac small nuclear 28, pseudogene	small non-coding RNA gene	no	.	2.989	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SLC37A2_LS010	chr11:125081906|125082244:+	SLC37A2	solute carrier family 37 member 2	protein coding gene	no	ENST00000403796.6;ENST00000526405.5;ENST00000308074.4	6.377	7.830	3.735	0.742(7105)	0.745(523)	0.807(14032)	non tumor-specific	nAS	yes
AC009126.1_LS006	chr5:96873378|96934122:-	AC009126.1	-	lncRNA gene	no	ENST00000501338.5	0.838	0.423	0.960	0.097(929)	0.154(108)	0.333(5780)	non tumor-specific	exon_skip	yes
WDR4_LS015	chr21:42848834|42849132:-	WDR4	WD repeat domain 4	protein coding gene	no	.;.;.	0.820	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
AC004160.1_LS016	chr7:11244479|11322249:+	AC004160.1	-	lncRNA gene	no	ENST00000441110.5	0.474	0.295	0.716	0.002(15)	0.021(15)	0.055(956)	non tumor-specific	nAS	yes
UN_ESRP1_LS0007	chr8:94641724|94641956:+	ESRP1	epithelial splicing regulatory protein 1	protein coding gene	yes	.	1.795	0.639	0.000	0.008(72)	0.014(10)	0(0)	non tumor-specific	intron_retention	no
DANCR_LS002	chr4:52712959|52713494:+	DANCR	differentiation antagonizing non-protein coding RNA	lncRNA gene	no	ENST00000411630.6;ENST00000425653.1;ENST00000444958.1	167.109	97.363	112.367	0.995(9536)	0.989(694)	0.979(17021)	non tumor-specific	nAS	yes
UN_USP4_LS0070	chr3:49324763|49324899:-	USP4	ubiquitin specific peptidase 4	protein coding gene	yes	.	3.746	0.616	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RSPH4A_LS001	chr6:116617309|116622768:+	RSPH4A	radial spoke head component 4A	protein coding gene	no	ENST00000368581.8;ENST00000229554.9;ENST00000368580.4	1.922	1.400	1.097	0.221(2122)	0.419(294)	0.466(8094)	non tumor-specific	nAS	yes
MYO1F_LS007	chr19:8527483|8530196:-	MYO1F	myosin IF	protein coding gene	no	ENST00000338257.12;ENST00000613525.4;ENST00000644032.1	11.042	6.629	9.409	0.89(8524)	0.886(622)	0.957(16631)	non tumor-specific	nAS	yes
SAR1B_LS001	chr5:134607066|134608372:-	SAR1B	secretion associated Ras related GTPase 1B	protein coding gene	no	ENST00000402673.6;ENST00000507419.5;ENST00000508363.5;ENST00000502539.5;ENST00000439578.5;ENST00000509937.5;ENST00000509730.5;ENST00000503318.5;ENST00000505758.5	69.243	59.975	46.755	0.991(9499)	0.991(696)	0.979(17016)	non tumor-specific	nAS	yes
UN_APH1A_LS0099	chr1:150268127|150268308:-	APH1A	aph-1 homolog A, gamma-secretase subunit	protein coding gene	no	.	5.348	1.359	0.000	0.02(187)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_XAB2_LS0001	chr19:7619645|7619747:-	XAB2	XPA binding protein 2	protein coding gene	no	.	32.345	3.544	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
TRIM7_LS006	chr5:181199117|181199851:-	TRIM7	tripartite motif containing 7	protein coding gene	no	ENST00000274773.11;ENST00000393315.5;ENST00000393319.7;ENST00000422067.2	3.818	2.081	4.516	0.513(4913)	0.591(415)	0.903(15690)	non tumor-specific	nAS	yes
UN_SPR_LS0009	chr2:72887736|72888338:+	SPR	tachykinin receptor 1	protein coding gene	no	.	3.635	0.680	0.000	0.027(254)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
NTRK1_LS011	chr1:156868647|156871623:+	NTRK1	neurotrophic receptor tyrosine kinase 1	protein coding gene	yes	ENST00000392302.6;ENST00000530298.5;ENST00000368196.7;ENST00000524377.5;ENST00000358660.3	6.909	0.514	1.328	0.095(906)	0.161(113)	0.476(8269)	non tumor-specific	exon_skip	yes
SLC39A11_LS016	chr17:72838120|72849634:-	SLC39A11	solute carrier family 39 member 11	protein coding gene	no	ENST00000579732.5	0.152	0.097	0.790	0.54(5175)	0.397(279)	0.339(5897)	non tumor-specific	alt_3prime	yes
SERPINH1_LS013	chr11:75562884|75566316:+	SERPINH1	serpin family H member 1	protein coding gene	no	ENST00000528990.1;ENST00000528990.1	0.016	0.031	0.683	0.79(7572)	0.779(547)	0.101(1762)	non tumor-specific	alt_5prime;exon_skip	yes
UN_R3HDM2_LS0107	chr12:57397090|57430720:-	R3HDM2	R3H domain containing 2	protein coding gene	no	.	0.827	0.087	0.000	0.006(54)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC126177.2_LS001	chr12:107833251|107834973:-	AC126177.2	-	lncRNA gene	no	ENST00000552154.1	0.216	0.142	0.756	0.057(548)	0.091(64)	0.064(1112)	non tumor-specific	nAS	yes
LCOR_LS002	chr10:96832399|96833406:+	LCOR	ligand dependent nuclear receptor corepressor	protein coding gene	no	ENST00000371103.8;ENST00000421806.3;ENST00000540664.6	2.122	1.352	1.376	0.548(5248)	0.701(492)	0.727(12642)	non tumor-specific	alt_5prime;exon_skip	yes
ADGRL3_LS030	chr4:62037856|62044453:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000512091.6;ENST00000514591.5;ENST00000509896.5;ENST00000511324.5;ENST00000506700.5;ENST00000507164.5;ENST00000508693.5;ENST00000507625.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5;ENST00000502815.1	11.764	6.239	5.691	0.286(2737)	0.513(360)	0.795(13827)	non tumor-specific	exon_skip	yes
SLC4A8_LS019	chr12:51457539|51458559:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000535225.6;ENST00000358657.7;ENST00000547697.6;ENST00000604314.5;ENST00000453097.6;ENST00000319957.10;ENST00000514353.7;ENST00000551071.5	4.098	2.391	1.658	0.251(2402)	0.313(220)	0.5(8692)	non tumor-specific	nAS	yes
C1orf167_LS013	chr1:11780010|11782194:+	C1orf167	chromosome 1 open reading frame 167	protein coding gene	no	ENST00000449278.1	0.841	0.000	0.624	0.001(7)	0(0)	0.001(19)	non tumor-specific	alt_3prime	yes
UN_MAF_LS0015	chr16:79598403|79598785:-	MAF	MAF bZIP transcription factor	protein coding gene	yes	.	1.735	0.962	0.000	0.061(584)	0.067(47)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FAM184A_LS025	chr6:119006608|119011309:-	FAM184A	family with sequence similarity 184 member A	protein coding gene	no	ENST00000338891.11;ENST00000475529.7;ENST00000352896.9;ENST00000368475.8;ENST00000521531.5;ENST00000522284.5	4.469	4.970	4.708	0.433(4151)	0.746(524)	0.835(14522)	non tumor-specific	alt_5prime	yes
SPNS2_LS016	chr17:4536174|4536900:+	SPNS2	sphingolipid transporter 2	protein coding gene	no	ENST00000571386.1;ENST00000573106.1;ENST00000571386.1;ENST00000573106.1	0.084	0.082	1.295	0.337(3231)	0.487(342)	0.443(7696)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ZNF577_LS006	chr19:51855967|51860904:-	ZNF577	zinc finger protein 577	protein coding gene	no	ENST00000639703.1;ENST00000638875.1;ENST00000640678.1;ENST00000639416.1;ENST00000640955.1	8.528	6.298	12.728	0.88(8434)	0.937(658)	0.96(16681)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GLCE_LS0014	chr15:69194525|69210316:+	GLCE	glucuronic acid epimerase	protein coding gene	no	.	1.311	0.606	0.000	0.057(544)	0.064(45)	0(0)	non tumor-specific	exon_skip	no
ARFIP2_LS009	chr11:6478652|6478738:-	ARFIP2	ADP ribosylation factor interacting protein 2	protein coding gene	no	ENST00000525235.1	0.427	0.428	5.337	0.898(8608)	0.885(621)	0.94(16344)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
EGR2_LS005	chr10:62816069|62816253:-	EGR2	early growth response 2	protein coding gene	yes	ENST00000637191.1	1.790	0.313	0.988	0.008(79)	0.007(5)	0.212(3686)	non tumor-specific	alt_3prime;intron_retention	yes
EPG5_LS034	chr18:45916582|45917679:-	EPG5	ectopic P-granules autophagy protein 5 homolog	protein coding gene	no	ENST00000282041.10;ENST00000649336.1;ENST00000585906.5;ENST00000587974.1	5.617	4.199	2.925	0.717(6870)	0.858(602)	0.865(15042)	non tumor-specific	exon_skip;intron_retention	yes
UN_MAU2_LS0011	chr19:19342662|19342776:+	MAU2	MAU2 sister chromatid cohesion factor	protein coding gene	no	.	3.724	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
PYDC1_LS002	chr16:31216157|31216743:-	PYDC1	pyrin domain containing 1	protein coding gene	no	ENST00000302964.3	0.849	0.690	12.123	0.273(2613)	0.239(168)	0.321(5575)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DENND1A_LS0035	chr9:123472826|123487860:+	DENND1A	DENN domain containing 1A	protein coding gene	no	.	2.480	0.911	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPL17_LS011	chr18:49491584|49492131:-	RPL17	ribosomal protein L17	protein coding gene	no	ENST00000578528.1	0.015	0.022	1.328	0.918(8796)	0.934(656)	0.684(11890)	non tumor-specific	alt_5prime	yes
CYP46A1_LS019	chr14:99725479|99726190:+	CYP46A1	cytochrome P450 family 46 subfamily A member 1	protein coding gene	no	ENST00000261835.7;ENST00000380228.6;ENST00000554176.5;ENST00000554917.5	6.759	14.691	3.512	0.283(2710)	0.429(301)	0.853(14831)	non tumor-specific	exon_skip;intron_retention	yes
UN_MTG2_LS0038	chr20:62195949|62197768:+	MTG2	mitochondrial ribosome associated GTPase 2	protein coding gene	no	.	4.137	0.184	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_PTDSS2_LS0028	chr11:479152|486891:+	PTDSS2	phosphatidylserine synthase 2	protein coding gene	no	.	5.958	2.840	0.000	0.052(503)	0.064(45)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
CC2D2B_LS006	chr10:95922076|95924314:+	CC2D2B	coiled-coil and C2 domain containing 2B	protein coding gene	no	ENST00000602648.5;ENST00000423344.6;ENST00000618242.1	0.470	0.121	1.007	0.137(1310)	0.113(79)	0.448(7782)	non tumor-specific	nAS	yes
ARL4A_LS007	chr7:12687728|12688166:+	ARL4A	ADP ribosylation factor like GTPase 4A	protein coding gene	no	ENST00000396662.5;ENST00000439721.1;ENST00000396663.2	2.783	2.385	17.488	0.963(9224)	0.977(686)	0.971(16873)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SLC2A1_LS0144	chr1:42942642|42943226:-	SLC2A1	solute carrier family 2 member 1	protein coding gene	no	.	1.464	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
EFR3A_LS016	chr8:131979019|131979346:+	EFR3A	EFR3 homolog A	protein coding gene	no	ENST00000254624.9;ENST00000637848.1;ENST00000519656.1	47.366	38.607	20.806	0.945(9056)	0.983(690)	0.974(16928)	non tumor-specific	nAS	yes
ZNF512B_LS001	chr20:63960139|63960459:-	ZNF512B	zinc finger protein 512B	protein coding gene	no	.;.	1.562	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC136618.1_LS001	chr16:18570912|18571606:-	AC136618.1	-	lncRNA gene	no	ENST00000561676.1	0.067	0.014	0.677	0.028(269)	0.024(17)	0.003(45)	non tumor-specific	nAS	yes
TRPV2_LS009	chr17:16426877|16427452:+	TRPV2	transient receptor potential cation channel subfamily V member 2	protein coding gene	no	.;.	5.242	2.321	0.000	0.045(428)	0.038(27)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC093392.2_UP_LS0015	chr7:56369611|56373433:+	AC093392.2	-	pseudogene	no	.	4.740	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CDIP1_LS018	chr16:4514664|4522417:-	CDIP1	cell death inducing p53 target 1	protein coding gene	no	ENST00000566234.2	0.064	0.059	0.706	0.347(3327)	0.407(286)	0.157(2723)	non tumor-specific	nAS	yes
SKAP1_LS012	chr17:48182457|48184723:-	SKAP1	src kinase associated phosphoprotein 1	protein coding gene	no	ENST00000336915.10;ENST00000584709.5;ENST00000584924.5;ENST00000579336.1;ENST00000581419.1	13.099	9.630	2.630	0.856(8198)	0.923(648)	0.703(12225)	non tumor-specific	exon_skip	yes
PIH1D1_LS037	chr19:49451591|49453393:-	PIH1D1	PIH1 domain containing 1	protein coding gene	no	.;.	6.931	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CD74_LS0076	chr5:150401831|150402100:+	CD74	CD74 molecule	protein coding gene	no	.	64.446	3.734	0.000	0.006(59)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HNRNPDL_LS0010	chr4:82425667|82425753:-	HNRNPDL	heterogeneous nuclear ribonucleoprotein D like	protein coding gene	no	.	8.645	0.556	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
PLXNB1_LS044	chr3:48419674|48420665:-	PLXNB1	plexin B1	protein coding gene	yes	ENST00000449094.5;ENST00000449094.5;ENST00000449094.5	0.748	0.458	5.159	0.804(7703)	0.839(589)	0.862(14981)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CBWD5_LS007	chr9:65681670|65682766:+	CBWD5	COBW domain containing 5	protein coding gene	no	ENST00000382405.7;ENST00000377392.9;ENST00000377389.5;ENST00000469921.5;ENST00000476161.5;ENST00000497250.5;ENST00000480229.5;ENST00000430059.6;ENST00000429800.6;ENST00000465474.5;ENST00000486221.5;ENST00000377395.8;ENST00000382404.6;ENST00000478650.2;ENST00000472916.5	15.282	10.108	2.788	0.994(9524)	0.997(700)	0.886(15398)	non tumor-specific	nAS	yes
CEP72_LS008	chr5:637818|639089:+	CEP72	centrosomal protein 72	protein coding gene	no	ENST00000264935.5	6.864	1.904	2.980	0.885(8482)	0.788(553)	0.905(15725)	non tumor-specific	exon_skip	yes
PLCB1_LS023	chr20:8657284|8658538:+	PLCB1	phospholipase C beta 1	protein coding gene	no	ENST00000637919.1;ENST00000625874.2;ENST00000630495.2;ENST00000378641.7;ENST00000338037.10;ENST00000636319.1;ENST00000378637.6;ENST00000636825.1;ENST00000635830.1;ENST00000626966.2;ENST00000617005.4;ENST00000612075.4	3.792	2.778	3.233	0.642(6155)	0.759(533)	0.84(14608)	non tumor-specific	exon_skip	yes
UN_AC007333.1_UP_LS0006	chr16:51646559|52087142:+	AC007333.1	-	lncRNA gene	no	.	6.653	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC135178.2_LS0023	chr17:8377692|8379915:-	AC135178.2	-	protein coding gene	no	.	253.200	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UBASH3B_LS004	chr11:122774263|122776219:+	UBASH3B	ubiquitin associated and SH3 domain containing B	protein coding gene	no	ENST00000530917.5	0.284	0.247	0.755	0.085(812)	0.131(92)	0.058(1005)	non tumor-specific	nAS	yes
UHRF1BP1L_LS025	chr12:100103951|100108386:-	UHRF1BP1L	UHRF1 binding protein 1 like	protein coding gene	no	ENST00000279907.11;ENST00000356828.7;ENST00000547428.1	8.949	6.627	6.355	0.816(7814)	0.957(672)	0.953(16559)	non tumor-specific	exon_skip	yes
AL357558.2_LS001	chr20:47950924|47951757:+	AL357558.2	-	lncRNA gene	no	ENST00000431915.1	0.288	0.010	0.712	0.002(18)	0.001(1)	0.004(70)	non tumor-specific	nAS	yes
AL589935.1_LS019	chr6:71303045|71304348:-	AL589935.1	-	lncRNA gene	no	ENST00000432050.5;ENST00000586030.5;ENST00000618488.4;ENST00000450998.5;ENST00000585882.5;ENST00000587036.5	0.077	0.014	0.672	0.011(104)	0.017(12)	0.09(1572)	non tumor-specific	nAS	yes
UN_OTUD4_LS0012	chr4:145125858|145127526:+	OTUD4	OTU deubiquitinase 4	protein coding gene	no	.	4.174	0.252	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TBCD_LS011	chr17:82807668|82809708:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000355528.8;ENST00000539345.6	31.572	18.029	32.941	0.98(9386)	0.993(697)	0.979(17013)	non tumor-specific	nAS	yes
CDK4_LS022	chr12:57751736|57755932:-	CDK4	cyclin dependent kinase 4	protein coding gene	yes	ENST00000552862.1	0.085	0.250	0.667	0.708(6788)	0.682(479)	0.064(1108)	non tumor-specific	nAS	yes
UN_IL17RE_LS0001	chr3:9902619|9902890:+	IL17RE	interleukin 17 receptor E	protein coding gene	no	.	1.163	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GCNT1_LS0073	chr9:76615237|76624452:-	GCNT1	glucosaminyl (N-acetyl) transferase 1	protein coding gene	no	.	2.695	1.272	0.000	0.002(15)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_ZC3H7A_LS0015	chr16:11775013|11775407:-	ZC3H7A	zinc finger CCCH-type containing 7A	protein coding gene	no	.	1.584	0.436	0.000	0.013(129)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NBPF26_LS0003	chr1:120724138|120724160:+	NBPF26	NBPF member 26	protein coding gene	no	.	3.235	0.414	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZFP36L1_LS0167	chr14:68789725|68789842:+	ZFP36L1	ZFP36 ring finger protein like 1	protein coding gene	no	.	5.389	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
NFE2_LS003	chr12:54295304|54297764:-	NFE2	nuclear factor, erythroid 2	protein coding gene	no	ENST00000553198.1	0.020	0.002	1.459	0.109(1046)	0.128(90)	0.043(750)	non tumor-specific	nAS	yes
UN_TCF25_LS0079	chr16:89911481|89912495:+	TCF25	transcription factor 25	protein coding gene	no	.	0.763	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC007375.1_LS0002	chr14:77098526|77105657:+	AC007375.1	-	protein coding gene	no	.	1.207	0.204	0.000	0.008(73)	0.004(3)	0(0)	non tumor-specific	nAS	no
RASGRP4_LS024	chr19:38422153|38426069:-	RASGRP4	RAS guanyl releasing protein 4	protein coding gene	no	ENST00000615340.4;ENST00000586305.5;ENST00000589474.5;ENST00000614135.4;ENST00000622174.4;ENST00000587753.5;ENST00000454404.6;ENST00000617966.4;ENST00000589358.5;ENST00000592322.5;ENST00000588404.5;ENST00000618320.4;ENST00000293062.13;ENST00000433821.6;ENST00000615439.4;ENST00000426920.6;ENST00000587738.2;ENST00000589100.2	2.583	1.265	1.835	0.259(2486)	0.346(243)	0.669(11632)	non tumor-specific	nAS	yes
DRAM2_LS003	chr1:111118897|111119877:-	DRAM2	DNA damage regulated autophagy modulator 2	protein coding gene	no	ENST00000286692.8;ENST00000484310.5;ENST00000539140.5;ENST00000461449.5;ENST00000496430.6;ENST00000477588.5	109.634	71.211	83.579	0.999(9569)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LMAN1L_LS033	chr15:74824478|74825473:+	LMAN1L	lectin, mannose binding 1 like	protein coding gene	no	ENST00000565585.5;ENST00000566046.1	0.473	0.390	3.033	0.079(757)	0.108(76)	0.181(3143)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AIFM1_UP_LS0002	chrX:130196610|130205297:-	AIFM1	apoptosis inducing factor mitochondria associated 1	protein coding gene	no	.	2.238	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC31A2_LS0002	chr9:113156172|113157727:+	SLC31A2	solute carrier family 31 member 2	protein coding gene	no	.	2.935	0.324	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC104794.3_UP_LS0011	chr2:10014087|10014146:+	AC104794.3	-	lncRNA gene	no	.	0.905	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SLFN13_LS021	chr17:35446753|35447268:-	SLFN13	schlafen family member 13	protein coding gene	no	ENST00000526861.5;ENST00000542635.5;ENST00000526861.5;ENST00000542635.5	1.175	0.237	0.890	0.159(1528)	0.175(123)	0.285(4946)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PNN_LS010	chr14:39180676|39182309:+	PNN	pinin, desmosome associated protein	protein coding gene	yes	ENST00000557680.1	1.100	0.446	0.658	0.721(6909)	0.688(483)	0.106(1842)	non tumor-specific	alt_5prime;intron_retention	yes
PSMF1_LS017	chr20:1164476|1186340:+	PSMF1	proteasome inhibitor subunit 1	protein coding gene	no	ENST00000381898.5	0.624	0.306	1.021	0.225(2151)	0.235(165)	0.572(9942)	non tumor-specific	nAS	yes
STAM2_LS015	chr2:152148300|152175603:-	STAM2	signal transducing adaptor molecule 2	protein coding gene	no	ENST00000494589.1	0.040	0.027	0.677	0.586(5614)	0.707(496)	0.191(3314)	non tumor-specific	exon_skip	yes
UN_SCRIB_LS0133	chr8:143811029|143811146:-	SCRIB	scribble planar cell polarity protein	protein coding gene	yes	.	13.532	3.175	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_TPSB2_LS0015	chr16:1229951|1230091:-	TPSB2	tryptase beta 2	protein coding gene	no	.	2.204	1.375	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
GCA_LS019	chr2:162359157|162360226:+	GCA	grancalcin	protein coding gene	no	.;.;.	3.533	0.140	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GPC5_LS0024	chr13:92104221|92144830:+	GPC5	glypican 5	protein coding gene	yes	.	4.087	8.610	0.000	0.019(182)	0.177(124)	0(0)	non tumor-specific	nAS	no
ZNF544_LS016	chr19:58246427|58260851:+	ZNF544	zinc finger protein 544	protein coding gene	no	ENST00000600044.5;ENST00000600220.5	0.033	0.058	0.742	0.142(1360)	0.174(122)	0.23(3999)	non tumor-specific	nAS	yes
UN_PHYKPL_LS0027	chr5:178214015|178214796:-	PHYKPL	5-phosphohydroxy-L-lysine phospho-lyase	protein coding gene	no	.	2.204	0.140	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SYNE2_LS076	chr14:64121061|64122012:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000394768.6;ENST00000553455.1	11.270	15.874	12.512	0.901(8633)	0.97(681)	0.93(16160)	non tumor-specific	exon_skip	yes
PPRC1_LS021	chr10:102149329|102149926:+	PPRC1	PPARG related coactivator 1	protein coding gene	no	ENST00000413464.6;ENST00000278070.6;ENST00000370012.1	47.625	20.831	47.522	0.965(9242)	0.976(685)	0.979(17019)	non tumor-specific	exon_skip	yes
DTNB_LS024	chr2:25455494|25482796:-	DTNB	dystrobrevin beta	protein coding gene	no	ENST00000496972.6;ENST00000398951.6;ENST00000406818.7;ENST00000404103.7;ENST00000407661.7;ENST00000288642.12;ENST00000485845.5	25.451	14.172	10.102	0.983(9418)	0.989(694)	0.976(16965)	non tumor-specific	exon_skip	yes
SLX4_LS012	chr16:3601191|3606474:-	SLX4	SLX4 structure-specific endonuclease subunit	protein coding gene	yes	.;.	0.170	0.152	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
FAM160A1_LS019	chr4:151656410|151656760:+	FAM160A1	family with sequence similarity 160 member A1	protein coding gene	no	ENST00000435205.5;ENST00000505231.1	7.228	5.237	3.413	0.634(6071)	0.805(565)	0.676(11751)	non tumor-specific	nAS	yes
AP002957.1_LS004	chr11:79093351|79097350:+	AP002957.1	-	lncRNA gene	no	ENST00000534593.1	0.154	0.032	0.513	0.066(629)	0.027(19)	0.008(133)	non tumor-specific	nAS	yes
UN_ZC3H3_LS0013	chr8:143438087|143439877:-	ZC3H3	zinc finger CCCH-type containing 3	protein coding gene	no	.	11.329	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_NKAPD1_LS0003	chr11:112074358|112074610:+	NKAPD1	NKAP domain containing 1	protein coding gene	no	.	0.492	0.043	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PLTP_LS017	chr20:45910070|45910871:-	PLTP	phospholipid transfer protein	protein coding gene	no	ENST00000372420.5;ENST00000372420.5	0.422	0.183	1.752	0.699(6701)	0.714(501)	0.711(12351)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
C15orf41_LS006	chr15:36594918|36644278:+	C15orf41	CDAN1 interacting nuclease 1	protein coding gene	no	ENST00000643612.1;ENST00000562877.5	0.028	0.007	10.033	0.081(772)	0.073(51)	0.032(553)	non tumor-specific	nAS	yes
CAD_LS026	chr2:27233536|27233626:+	CAD	DNA fragmentation factor subunit beta	protein coding gene	no	ENST00000264705.8;ENST00000403525.5	23.995	7.378	9.643	0.913(8744)	0.922(647)	0.97(16858)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SDF4_LS0022	chr1:1217422|1217602:+	SDF4	stromal cell derived factor 4	protein coding gene	no	.	1.267	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
SLC22A18_LS008	chr11:2909356|2909578:+	SLC22A18	solute carrier family 22 member 18	protein coding gene	no	ENST00000347936.6;ENST00000312221.9;ENST00000649076.1;ENST00000380574.5;ENST00000492567.2;ENST00000498244.1	33.484	24.816	13.311	0.964(9234)	0.984(691)	0.95(16516)	non tumor-specific	exon_skip	yes
UN_CNOT3_LS0002	chr19:54137993|54139276:+	CNOT3	CCR4-NOT transcription complex subunit 3	protein coding gene	yes	.	1.688	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_NUCB1_LS0199	chr19:48923004|48923035:-	NUCB1	nucleobindin 1	protein coding gene	no	.	13.429	1.114	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TMPRSS3_LS0027	chr21:42384013|42385441:-	TMPRSS3	transmembrane serine protease 4	protein coding gene	no	.	8.830	0.875	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FP236383.1_UP_LS0371	chr21:8215967|8260080:+	FP236383.1	-	lncRNA gene	no	.	83.910	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL157373.2_UP_LS0033	chr6:11993114|11994877:+	AL157373.2	-	lncRNA gene	no	.	7.506	0.407	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC2A1_LS0125	chr1:42930026|42930677:+	SLC2A1	solute carrier family 2 member 1	protein coding gene	no	.	8.436	0.372	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
SPOCK2_LS006	chr10:72068301|72068731:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	ENST00000460053.1	0.137	0.082	0.800	0.259(2478)	0.329(231)	0.038(654)	non tumor-specific	alt_5prime	yes
UN_BOD1L1_LS0024	chr4:13614810|13615292:-	BOD1L1	biorientation of chromosomes in cell division 1 like 1	protein coding gene	no	.	2.214	0.777	0.000	0.027(259)	0.037(26)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CLIP2_LS0004	chr7:74297030|74317480:+	CLIP2	CAP-Gly domain containing linker protein 2	protein coding gene	no	.	1.868	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AL445933.2_UP_LS0009	chr1:41394065|41400169:+	AL445933.2	-	lncRNA gene	no	.	2.485	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDX60L_LS0069	chr4:168476120|168480195:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	.	0.614	0.111	0.000	0.009(83)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
AC007368.1_LS013	chr12:126427267|126433875:+	AC007368.1	-	lncRNA gene	no	ENST00000544419.1	0.705	0.000	0.806	0.001(12)	0(0)	0.019(324)	non tumor-specific	nAS	yes
SORCS1_LS018	chr10:106667802|106671237:-	SORCS1	sortilin related VPS10 domain containing receptor 1	protein coding gene	no	ENST00000263054.10;ENST00000612154.4;ENST00000622431.4;ENST00000369698.5;ENST00000344440.7;ENST00000472196.1	3.187	1.956	2.319	0.176(1683)	0.265(186)	0.591(10271)	non tumor-specific	nAS	yes
ARID3A_LS005	chr19:932742|960092:+	ARID3A	AT-rich interaction domain 3A	protein coding gene	yes	ENST00000263620.7;ENST00000587532.5;ENST00000457152.3	6.624	1.458	3.136	0.531(5092)	0.376(264)	0.891(15491)	non tumor-specific	exon_skip	yes
UN_STRADB_LS0022	chr2:201473076|201474651:+	STRADB	STE20 related adaptor beta	protein coding gene	no	.	3.929	3.552	0.000	0.005(51)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_SLC25A34_LS0004	chr1:15737826|15737929:+	SLC25A34	solute carrier family 25 member 34	protein coding gene	no	.	1.423	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	intron_retention	no
MATR3_LS053	chr5:139294616|139307239:+	MATR3	matrin 3	protein coding gene	no	ENST00000514488.1	0.000	0.001	0.691	0.465(4452)	0.583(409)	0.039(680)	non tumor-specific	nAS	yes
UN_ACP5_UP_LS0015	chr19:11666481|11708184:-	ACP5	acid phosphatase 5, tartrate resistant	protein coding gene	no	.	0.502	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AL359237.1_LS006	chr14:87763810|87816132:-	AL359237.1	-	lncRNA gene	no	ENST00000554305.5;ENST00000554519.1	1.213	0.112	0.750	0.02(188)	0.006(4)	0.068(1186)	non tumor-specific	nAS	yes
UN_USF2_LS0097	chr19:35279583|35279647:-	USF2	upstream transcription factor 2, c-fos interacting	protein coding gene	no	.	3.146	0.269	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_UBE3C_LS0075	chr7:157264478|157264535:-	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	3.921	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XIST_LS0083	chrX:73845123|73845714:+	XIST	X inactive specific transcript	lncRNA gene	yes	.	2.338	0.274	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
POLR2M_LS012	chr15:57746219|57746900:+	POLR2M	RNA polymerase II subunit M	protein coding gene	no	ENST00000562260.1	0.022	0.000	0.652	0.001(11)	0(0)	0.006(96)	non tumor-specific	nAS	yes
GABRR1_LS017	chr6:89204694|89221275:-	GABRR1	gamma-aminobutyric acid type A receptor subunit rho1	protein coding gene	no	ENST00000621627.4;ENST00000369451.7	1.294	0.220	0.615	0.042(401)	0.007(5)	0.007(124)	non tumor-specific	exon_skip	yes
UN_ZBTB40_LS0014	chr1:22506241|22508530:+	ZBTB40	zinc finger and BTB domain containing 40	protein coding gene	no	.	1.354	0.161	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TMEM130_LS014	chr7:98863400|98870399:-	TMEM130	transmembrane protein 130	protein coding gene	no	ENST00000445790.1	0.151	0.030	0.987	0.035(336)	0.046(32)	0.065(1136)	non tumor-specific	nAS	yes
CMTM7_LS009	chr3:32452473|32454241:+	CMTM7	CKLF like MARVEL transmembrane domain containing 7	protein coding gene	no	ENST00000334983.9;ENST00000349718.8;ENST00000454304.6;ENST00000487007.1;ENST00000464689.1	64.780	24.655	23.678	0.997(9552)	0.996(699)	0.975(16956)	non tumor-specific	alt_3prime;exon_skip	yes
C2CD6_LS006	chr2:201495969|201545543:-	C2CD6	C2 calcium dependent domain containing 6	protein coding gene	no	ENST00000439802.5	0.829	0.000	0.735	0.009(82)	0(0)	0.037(648)	non tumor-specific	exon_skip	yes
CFH_LS017	chr1:196725297|196726470:+	CFH	complement factor H	protein coding gene	no	ENST00000367429.8;ENST00000466229.5	59.899	83.889	41.928	0.906(8680)	0.983(690)	0.953(16561)	non tumor-specific	alt_3prime;exon_skip	yes
HIPK3_LS003	chr11:33258690|33286413:+	HIPK3	homeodomain interacting protein kinase 3	protein coding gene	no	ENST00000531504.5;ENST00000456517.2	1.437	1.173	3.605	0.603(5774)	0.852(598)	0.797(13851)	non tumor-specific	alt_5prime	yes
UBOX5-AS1_LS004	chr20:3110717|3111644:+	UBOX5-AS1	UBOX5 antisense RNA 1	lncRNA gene	no	ENST00000446537.5;ENST00000454019.1	0.418	0.000	0.690	0(3)	0(0)	0.002(42)	non tumor-specific	nAS	yes
UN_TP73-AS1_LS0074	chr1:3739587|3739696:-	TP73-AS1	TP73 antisense RNA 1	pseudogene	no	.	2.934	0.484	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AF241726.2_LS0096	chrX:37905715|37906031:+	AF241726.2	-	protein coding gene	no	.	1.305	0.077	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ABR_LS0115	chr17:1095205|1095296:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	1.027	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_LINC01950_UP_LS0018	chr5:107230656|107285894:-	LINC01950	long intergenic non-protein coding RNA 1950	lncRNA gene	no	.	2.656	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
AC025569.1_LS009	chr12:70510577|70511075:+	AC025569.1	-	lncRNA gene	no	ENST00000548924.5	0.113	0.000	0.627	0.006(53)	0(0)	0.002(29)	non tumor-specific	nAS	yes
COL2A1_LS009	chr12:47977427|47977600:-	COL2A1	collagen type II alpha 1 chain	protein coding gene	no	ENST00000380518.7;ENST00000493991.5;ENST00000337299.7	18.590	3.754	1.213	0.185(1772)	0.132(93)	0.178(3097)	non tumor-specific	nAS	yes
GAD1_LS034	chr2:170857125|170858804:+	GAD1	glutamate decarboxylase 1	protein coding gene	no	ENST00000625689.2;ENST00000358196.7;ENST00000414527.6;ENST00000493875.5;ENST00000488724.5;ENST00000478562.1	5.636	13.312	2.891	0.431(4128)	0.269(189)	0.511(8875)	non tumor-specific	exon_skip	yes
FSTL5_LS007	chr4:161500134|161538166:-	FSTL5	follistatin like 5	protein coding gene	no	ENST00000427802.2	5.154	0.033	2.436	0.109(1043)	0.007(5)	0.164(2848)	non tumor-specific	exon_skip	yes
GOLGB1_LS010	chr3:121669355|121676893:-	GOLGB1	golgin B1	protein coding gene	no	ENST00000340645.9;ENST00000393667.7;ENST00000614479.4;ENST00000482512.5;ENST00000491690.1	111.857	63.222	108.256	0.995(9535)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_LZIC_LS0047	chr1:9942711|9943249:-	LZIC	leucine zipper and CTNNBIP1 domain containing	protein coding gene	no	.	1.822	1.339	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RGS7BP_LS002	chr5:64506789|64575774:+	RGS7BP	regulator of G protein signaling 7 binding protein	protein coding gene	no	ENST00000508162.1	0.087	0.068	0.767	0.084(806)	0.147(103)	0.086(1498)	non tumor-specific	exon_skip	yes
LEMD2_LS011	chr6:33781153|33784352:-	LEMD2	LEM domain nuclear envelope protein 2	protein coding gene	no	ENST00000293760.9;ENST00000614475.4;ENST00000421671.6;ENST00000508327.5;ENST00000512368.5;ENST00000513701.1;ENST00000514636.1	75.334	35.984	56.233	0.994(9520)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
CA14_LS010	chr1:150260248|150261578:+	CA14	carbonic anhydrase 14	protein coding gene	no	ENST00000607652.5;ENST00000607652.5	1.268	0.217	0.869	0.091(868)	0.03(21)	0.083(1439)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_SHROOM3_LS0017	chr4:76586469|76624759:+	SHROOM3	shroom family member 3	protein coding gene	no	.	0.944	0.581	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SFSWAP_LS016	chr12:131755479|131756473:+	SFSWAP	splicing factor SWAP	protein coding gene	no	ENST00000261674.8;ENST00000538548.5;ENST00000535236.5;ENST00000541286.5;ENST00000537164.1	37.166	16.728	54.078	0.995(9529)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
PARP2_LS006	chr14:20345464|20346863:+	PARP2	poly(ADP-ribose) polymerase 2	protein coding gene	no	ENST00000429687.7;ENST00000250416.9;ENST00000529465.6;ENST00000527915.5	25.636	14.369	36.254	0.982(9408)	0.991(696)	0.977(16977)	non tumor-specific	exon_skip	yes
UN_AC244205.1_UP_LS0093	chr2:88861922|89319625:-	AC244205.1	-	lncRNA gene	no	.	407.044	72.003	0.000	0.008(76)	0.017(12)	0(0)	non tumor-specific	nAS	no
SLC40A1_LS001	chr2:189562191|189563584:-	SLC40A1	solute carrier family 40 member 1	protein coding gene	no	ENST00000261024.6	122.108	144.232	50.932	0.981(9403)	0.979(687)	0.971(16883)	non tumor-specific	nAS	yes
UN_GRIA3_LS0010	chrX:123188590|123225144:-	GRIA3	glutamate ionotropic receptor AMPA type subunit 3	protein coding gene	no	.	1.299	0.000	0.000	0.009(87)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGEF2_LS0008	chr1:155947028|155947092:+	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	.	14.370	1.201	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	nAS	no
PYROXD2_LS029	chr10:98395452|98397345:-	PYROXD2	pyridine nucleotide-disulphide oxidoreductase domain 2	protein coding gene	no	ENST00000483923.5;ENST00000370575.4	7.694	7.288	10.883	0.76(7283)	0.934(656)	0.966(16791)	non tumor-specific	alt_5prime	yes
UN_TENT2_UP_LS0007	chr5:79548302|79574136:+	TENT2	terminal nucleotidyltransferase 2	protein coding gene	no	.	3.408	0.665	0.000	0.024(231)	0.02(14)	0(0)	non tumor-specific	nAS	no
POPDC2_LS001	chr3:119636516|119642366:-	POPDC2	popeye domain containing 2	protein coding gene	no	ENST00000495362.1	0.113	0.121	0.972	0.18(1727)	0.299(210)	0.25(4339)	non tumor-specific	nAS	yes
UN_MPST_LS0078	chr22:37029516|37029565:-	MPST	mercaptopyruvate sulfurtransferase	protein coding gene	yes	.	2.325	0.708	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF85_LS0011	chr19:20935047|20942821:+	ZNF85	zinc finger protein 85	protein coding gene	no	.	3.873	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_SH3PXD2A_LS0108	chr10:103735808|103738608:-	SH3PXD2A	SH3 and PX domains 2A	protein coding gene	no	.	1.273	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BIN1_LS035	chr2:127063646|127063933:-	BIN1	bridging integrator 1	protein coding gene	yes	ENST00000376113.6;ENST00000357970.7;ENST00000393040.7;ENST00000348750.8;ENST00000259238.8;ENST00000346226.7;ENST00000393041.7;ENST00000351659.7;ENST00000352848.7;ENST00000316724.9;ENST00000409400.1;ENST00000466111.5;ENST00000484253.1	170.488	151.247	80.709	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_ANKRD54_LS0016	chr22:37833005|37833159:-	ANKRD54	ankyrin repeat domain 54	protein coding gene	no	.	3.207	2.029	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_CRLF3_LS0046	chr17:30787045|30787792:+	CRLF3	cytokine receptor like factor 3	protein coding gene	no	.	1.124	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
STX4_LS015	chr16:31038190|31038510:+	STX4	syntaxin 4	protein coding gene	no	ENST00000493902.5;ENST00000394998.5;ENST00000313843.7;ENST00000487411.5;ENST00000496977.5	116.044	65.377	114.065	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_LINC01517_LS0002	chr10:28744107|28771356:+	LINC01517	long intergenic non-protein coding RNA 1517	lncRNA gene	no	.	7.081	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MINOS1_LS007	chr1:19597109|19622100:+	MINOS1	mitochondrial contact site and cristae organizing system subunit 10	protein coding gene	no	ENST00000322753.6;ENST00000498642.5	33.923	22.892	281.937	0.934(8946)	0.954(670)	0.979(17021)	non tumor-specific	exon_skip	yes
EME2_LS008	chr16:1775986|1776068:+	EME2	essential meiotic structure-specific endonuclease subunit 2	protein coding gene	no	ENST00000568449.5;ENST00000570069.5;ENST00000561903.6;ENST00000564182.1	2.131	1.252	10.108	0.863(8271)	0.774(543)	0.971(16882)	non tumor-specific	nAS	yes
UN_LRRC2_LS0026	chr3:46579738|46579951:+	LRRC2	leucine rich repeat containing 2	protein coding gene	no	.	1.060	0.555	0.000	0.002(21)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
UN_FTCDNL1_LS0022	chr2:199848948|199850740:-	FTCDNL1	formiminotransferase cyclodeaminase N-terminal like	protein coding gene	no	.	1.316	0.208	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_RETREG2_LS0086	chr2:219182702|219182775:-	RETREG2	reticulophagy regulator family member 2	protein coding gene	no	.	3.103	0.946	0.000	0.006(58)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_KIAA1522_LS0303	chr1:32774642|32774768:-	KIAA1522	KIAA1522	protein coding gene	no	.	3.803	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TAOK2_LS001	chr16:29974648|29977738:+	TAOK2	TAO kinase 2	protein coding gene	no	ENST00000308893.8;ENST00000543033.5;ENST00000279394.7	36.093	27.340	25.279	0.967(9263)	0.991(696)	0.978(17006)	non tumor-specific	alt_3prime	yes
UN_PPP4R3A_UP_LS0009	chr14:91554101|91554233:-	PPP4R3A	protein phosphatase 4 regulatory subunit 3A	protein coding gene	no	.	1.953	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC243962.1_LS0002	chr19:54671487|54672046:+	AC243962.1	-	pseudogene	no	.	2.398	0.396	0.000	0.012(116)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ADORA2B_LS0004	chr17:15946455|15974679:+	ADORA2B	adenosine A2b receptor	protein coding gene	no	.	2.438	1.084	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_KRT1_LS0017	chr12:52676369|52676400:+	KRT1	keratin 1	protein coding gene	no	.	62.954	8.841	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MTREX_LS0039	chr5:55412749|55425065:-	MTREX	Mtr4 exosome RNA helicase	protein coding gene	no	.	1.986	0.415	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
CD86_LS002	chr3:122055503|122103512:+	CD86	CD86 molecule	protein coding gene	no	ENST00000469710.5	0.188	0.418	0.874	0.428(4096)	0.403(283)	0.243(4224)	non tumor-specific	exon_skip	yes
CMTR1_LS007	chr6:37450343|37451806:+	CMTR1	cap methyltransferase 1	protein coding gene	no	ENST00000455891.5;ENST00000373451.8	28.333	18.271	35.793	0.977(9356)	0.993(697)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC47_LS013	chr17:63766194|63773412:-	CCDC47	coiled-coil domain containing 47	protein coding gene	no	ENST00000225726.9;ENST00000582252.1;ENST00000584112.1	26.930	22.902	32.791	0.988(9465)	0.997(700)	0.978(17007)	non tumor-specific	alt_3prime;exon_skip	yes
SMAD4_LS022	chr18:51076776|51077307:+	SMAD4	SMAD family member 4	protein coding gene	yes	ENST00000611848.1	2.273	1.944	3.585	0.728(6971)	0.876(615)	0.906(15747)	non tumor-specific	exon_skip	yes
LINC00485_LS004	chr12:102822763|102824296:-	LINC00485	long intergenic non-protein coding RNA 485	lncRNA gene	no	ENST00000547179.1	3.562	0.000	0.798	0.001(7)	0(0)	0.021(368)	non tumor-specific	nAS	yes
CIDECP_LS002	chr3:10015526|10023560:-	CIDECP	cell death inducing DFFA like effector c pseudogene 1	pseudogene	no	ENST00000432401.5	0.286	0.114	1.820	0.81(7762)	0.863(606)	0.822(14280)	non tumor-specific	nAS	yes
SARAF_LS002	chr8:30063913|30065988:-	SARAF	store-operated calcium entry associated regulatory factor	protein coding gene	no	ENST00000256255.10;ENST00000545648.2;ENST00000518174.5;ENST00000520303.5;ENST00000523127.5	517.469	381.571	369.932	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
C1orf194_LS009	chr1:109107122|109107921:-	C1orf194	chromosome 1 open reading frame 194	protein coding gene	no	ENST00000369948.7;ENST00000369949.8;ENST00000369942.2	1.395	0.975	1.408	0.224(2145)	0.246(173)	0.286(4967)	non tumor-specific	alt_3prime;exon_skip	yes
HHATL_LS003	chr3:42693218|42693617:-	HHATL	hedgehog acyltransferase like	protein coding gene	no	ENST00000466007.1;ENST00000310417.9;ENST00000441594.5;ENST00000480939.1	10.834	10.739	3.613	0.364(3483)	0.516(362)	0.78(13566)	non tumor-specific	intron_retention	yes
VIM_LS015	chr10:17235889|17236294:+	VIM	vimentin	protein coding gene	yes	ENST00000544301.6;ENST00000224237.9	5398.301	2323.562	2982.112	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPTAN1_LS0052	chr9:128624438|128625793:+	SPTAN1	spectrin alpha, non-erythrocytic 1	protein coding gene	no	.	21.118	4.567	0.000	0.008(74)	0.01(7)	0(0)	non tumor-specific	nAS	no
NKAPD1_LS014	chr11:112082035|112082465:+	NKAPD1	NKAP domain containing 1	protein coding gene	no	ENST00000532163.5;ENST00000524989.1;ENST00000393047.7;ENST00000525785.5;ENST00000531378.1	21.970	13.965	11.911	0.979(9379)	0.99(695)	0.971(16874)	non tumor-specific	alt_3prime	yes
UN_BCL7C_LS0036	chr16:30892889|30892933:-	BCL7C	BAF chromatin remodeling complex subunit BCL7C	protein coding gene	no	.	13.334	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PEX6_LS004	chr6:42965152|42965252:-	PEX6	peroxisomal biogenesis factor 6	protein coding gene	no	ENST00000304611.12;ENST00000244546.4	89.858	44.959	53.990	0.995(9535)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTF2_LS020	chr1:117095367|117096149:+	TTF2	transcription termination factor 2	protein coding gene	no	ENST00000369466.8;ENST00000492682.5;ENST00000463696.1	12.954	4.652	8.606	0.862(8258)	0.823(578)	0.958(16644)	non tumor-specific	exon_skip	yes
UN_AL138752.2_LS0287	chr9:38068265|38068398:+	AL138752.2	-	protein coding gene	no	.	1.767	0.809	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
PIGO_LS018	chr9:35091291|35093030:-	PIGO	phosphatidylinositol glycan anchor biosynthesis class O	protein coding gene	no	.;.	6.875	0.398	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PTPRU_LS0061	chr1:29326326|29326365:-	PTPRU	protein tyrosine phosphatase receptor type U	protein coding gene	no	.	5.723	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
FER1L6-AS2_LS001	chr8:124046776|124047557:-	FER1L6-AS2	FER1L6 antisense RNA 2	lncRNA gene	no	ENST00000520031.1	1.822	0.030	1.297	0.007(69)	0.001(1)	0.066(1150)	non tumor-specific	nAS	yes
TOP2B_LS038	chr3:25638310|25642322:-	TOP2B	DNA topoisomerase II beta	protein coding gene	no	ENST00000264331.8;ENST00000435706.6;ENST00000424225.1	41.825	32.760	28.218	0.939(8999)	0.983(690)	0.976(16957)	non tumor-specific	nAS	yes
C1orf141_LS013	chr1:67131227|67231846:-	C1orf141	chromosome 1 open reading frame 141	protein coding gene	no	ENST00000371007.6;ENST00000448166.6	1.742	0.705	0.561	0.001(12)	0.004(3)	0.001(15)	non tumor-specific	nAS	yes
ZMYND8_LS031	chr20:47294779|47298729:-	ZMYND8	zinc finger MYND-type containing 8	protein coding gene	no	ENST00000311275.11;ENST00000536340.5;ENST00000360911.7;ENST00000446994.6;ENST00000355972.8;ENST00000396281.8;ENST00000619049.4;ENST00000611941.4;ENST00000458360.6;ENST00000467200.6;ENST00000262975.8;ENST00000471951.6;ENST00000352431.6;ENST00000540497.5;ENST00000461685.5;ENST00000617418.4;ENST00000468376.2;ENST00000435836.5	20.538	13.152	13.369	0.932(8930)	0.959(673)	0.969(16847)	non tumor-specific	exon_skip	yes
IMPA2_LS015	chr18:12014373|12021702:+	IMPA2	inositol monophosphatase 2	protein coding gene	no	ENST00000586230.1	0.065	0.011	0.702	0.094(900)	0.081(57)	0.142(2469)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
OTOGL_LS047	chr12:80342162|80352295:+	OTOGL	otogelin like	protein coding gene	no	ENST00000646859.1;ENST00000547103.6;ENST00000458043.6;ENST00000298820.7	2.311	0.853	1.068	0.046(442)	0.09(63)	0.336(5838)	non tumor-specific	nAS	yes
UN_MPHOSPH9_LS0007	chr12:123156904|123160781:-	MPHOSPH9	M-phase phosphoprotein 9	protein coding gene	no	.	2.264	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RPL30_LS0029	chr8:98041857|98042645:+	RPL30	ribosomal protein L30	protein coding gene	no	.	1448.949	228.418	0.000	0.03(292)	0.023(16)	0(0)	non tumor-specific	nAS	no
CEMIP2_LS002	chr9:71685393|71685743:-	CEMIP2	cell migration inducing hyaluronidase 2	protein coding gene	no	ENST00000377044.8;ENST00000377057.5;ENST00000538669.1;ENST00000377066.9;ENST00000542935.5;ENST00000396272.7	50.227	37.923	20.747	0.977(9360)	0.99(695)	0.978(17002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LONP2_LS016	chr16:48303305|48334216:+	LONP2	lon peptidase 2, peroxisomal	protein coding gene	no	ENST00000285737.8;ENST00000535754.5;ENST00000416006.7;ENST00000566755.5	70.882	46.564	33.352	0.994(9525)	0.997(700)	0.979(17013)	non tumor-specific	nAS	yes
UN_POLR2A_LS0300	chr17:7513596|7513702:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	25.859	6.446	0.000	0.006(54)	0.009(6)	0(0)	non tumor-specific	nAS	no
TBL1XR1_LS004	chr3:177026474|177032552:-	TBL1XR1	TBL1X receptor 1	protein coding gene	no	ENST00000636348.1	3.192	0.030	0.679	0.003(29)	0.001(1)	0.1(1743)	non tumor-specific	exon_skip;mutex_exons	yes
ALDH5A1_LS009	chr6:24520544|24522767:+	ALDH5A1	aldehyde dehydrogenase 5 family member A1	protein coding gene	no	ENST00000357578.7;ENST00000491546.5;ENST00000348925.2	23.745	21.733	8.127	0.958(9176)	0.993(697)	0.958(16655)	non tumor-specific	exon_skip	yes
UN_AC009163.5_UP_LS0014	chr16:75505283|75517213:-	AC009163.5	-	lncRNA gene	no	.	0.808	0.107	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF578_LS002	chr19:52453717|52456677:+	ZNF578	zinc finger protein 578	protein coding gene	no	ENST00000596674.1	0.043	0.003	0.677	0.021(202)	0.016(11)	0.015(262)	non tumor-specific	intron_retention	yes
UN_ACTG1_LS0292	chr17:81511395|81511426:+	ACTG1	actin gamma 1	protein coding gene	no	.	130.396	9.155	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_OLFML2A_LS0018	chr9:124812274|124812410:-	OLFML2A	olfactomedin like 2A	protein coding gene	no	.	1.095	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATP6V1C2_LS0032	chr2:10768810|10770899:+	ATP6V1C2	ATPase H+ transporting V1 subunit C2	protein coding gene	no	.	2.318	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
SNHG12_LS008	chr1:28580646|28581590:-	SNHG12	small nucleolar RNA host gene 12	lncRNA gene	no	ENST00000481220.6	0.064	0.069	2.980	0.642(6154)	0.511(359)	0.871(15137)	non tumor-specific	nAS	yes
UN_POLR2A_LS0262	chr17:7513462|7514053:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	3.619	0.040	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
OAS1_LS009	chr12:112908824|112911098:+	OAS1	2'-5'-oligoadenylate synthetase 1	protein coding gene	no	ENST00000549820.1;ENST00000549820.1	0.722	1.322	1.604	0.889(8518)	0.877(616)	0.607(10556)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC132008.2_UP_LS0020	chr3:197651337|197654817:-	AC132008.2	-	pseudogene	no	.	0.613	0.063	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KANK1_LS0124	chr9:642907|676890:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	1.466	0.637	0.000	0.003(28)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RHOG_LS0056	chr11:3827754|3827941:+	RHOG	ras homolog family member G	protein coding gene	no	.	14.032	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SLIT2_LS047	chr4:20617198|20617439:+	SLIT2	slit guidance ligand 2	protein coding gene	yes	ENST00000503823.5;ENST00000504154.5;ENST00000622093.4;ENST00000273739.9;ENST00000503837.5;ENST00000508541.1	11.582	18.533	17.585	0.83(7948)	0.95(667)	0.916(15925)	non tumor-specific	nAS	yes
UN_PARP10_LS0167	chr8:143990199|143991692:+	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	0.936	0.426	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AL033530.1_LS003	chr1:68882003|68882943:+	AL033530.1	-	lncRNA gene	no	ENST00000645269.1	1.375	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_AC006262.3_UP_LS0004	chr19:46235904|46249322:-	AC006262.3	-	lncRNA gene	no	.	4.249	1.019	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
CAPN1_LS046	chr11:65210096|65210336:+	CAPN1	calpain 1	protein coding gene	no	ENST00000533820.5;ENST00000533129.5;ENST00000524773.5;ENST00000279247.10;ENST00000527323.5;ENST00000528165.5;ENST00000533704.1;ENST00000530567.1	113.190	84.041	136.151	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
OGA_LS025	chr10:101804019|101806045:-	OGA	O-GlcNAcase	protein coding gene	no	ENST00000361464.7;ENST00000439817.5;ENST00000357797.9;ENST00000370094.7	49.349	36.978	41.698	0.956(9161)	0.986(692)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PHKA1_LS0009	chrX:72611184|72617395:-	PHKA1	phosphorylase kinase regulatory subunit alpha 1	protein coding gene	no	.	1.391	0.000	0.000	0.006(53)	0(0)	0(0)	non tumor-specific	exon_skip	no
CALM1_LS017	chr14:90403968|90404399:+	CALM1	calmodulin 1	protein coding gene	no	ENST00000553422.1	0.600	0.704	11.113	0.862(8257)	0.889(624)	0.977(16983)	non tumor-specific	alt_3prime	yes
CLDN7_LS012	chr17:7262343|7263159:-	CLDN7	claudin 7	protein coding gene	no	ENST00000397317.8;ENST00000397317.8	2.739	12.315	1.571	0.743(7121)	0.838(588)	0.384(6679)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GJC2_LS0004	chr1:228154920|228157740:+	GJC2	gap junction protein gamma 2	protein coding gene	no	.	1.032	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AFMID_LS0018	chr17:78197363|78202499:+	AFMID	arylformamidase	protein coding gene	no	.	4.776	0.192	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_TIMM29_LS0024	chr19:10931067|10931203:+	TIMM29	translocase of inner mitochondrial membrane 29	protein coding gene	no	.	2.541	0.161	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SPI1_LS001	chr11:47355546|47358844:-	SPI1	Spi-1 proto-oncogene	protein coding gene	yes	ENST00000378538.7;ENST00000227163.8	48.135	25.255	30.570	0.985(9437)	0.983(690)	0.958(16660)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GPC1_LS0087	chr2:240466365|240466726:-	GPC1	glypican 1	protein coding gene	no	.	2.214	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AHNAK2_LS054	chr14:104944656|104949607:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.;.	0.330	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention;mutex_exons	yes
UN_AL031121.2_UP_LS0011	chr6:163393487|163415245:-	AL031121.2	-	lncRNA gene	no	.	1.360	0.489	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	nAS	no
GET4_LS001	chr7:876800|886056:+	GET4	guided entry of tail-anchored proteins factor 4	protein coding gene	no	ENST00000265857.7	23.659	14.741	34.139	0.982(9404)	0.981(689)	0.979(17018)	non tumor-specific	nAS	yes
REEP2_LS002	chr5:138439240|138441016:+	REEP2	receptor accessory protein 2	protein coding gene	no	ENST00000378339.6;ENST00000254901.9;ENST00000464751.6;ENST00000503379.5;ENST00000507511.5;ENST00000510467.5	2.205	1.633	4.293	0.571(5469)	0.66(463)	0.838(14558)	non tumor-specific	alt_3prime	yes
BAZ1B_LS014	chr7:73465537|73466296:-	BAZ1B	bromodomain adjacent to zinc finger domain 1B	protein coding gene	no	ENST00000339594.8;ENST00000404251.1;ENST00000466844.1;ENST00000339594.8;ENST00000404251.1;ENST00000466844.1	45.727	23.853	33.175	0.983(9417)	0.989(694)	0.978(17008)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_LINC02223_LS0022	chr5:17884809|17920227:+	LINC02223	long intergenic non-protein coding RNA 2223	lncRNA gene	no	.	15.381	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BRMS1L_LS008	chr14:35862686|35863870:+	BRMS1L	BRMS1 like transcriptional repressor	protein coding gene	no	ENST00000216807.11;ENST00000552677.5;ENST00000548758.1;ENST00000551774.1	18.542	14.292	12.072	0.947(9070)	0.986(692)	0.958(16657)	non tumor-specific	nAS	yes
ASPH_LS044	chr8:61651124|61653568:-	ASPH	aspartate beta-hydroxylase	protein coding gene	no	ENST00000379454.8;ENST00000541428.5;ENST00000523927.5;ENST00000356457.9;ENST00000445642.6;ENST00000519234.5;ENST00000518068.5;ENST00000517903.5;ENST00000517847.6;ENST00000522835.5;ENST00000518306.5	157.119	125.376	73.274	0.984(9426)	0.993(697)	0.979(17010)	non tumor-specific	exon_skip	yes
UN_B4GALT1_LS0147	chr9:33166913|33167023:+	B4GALT1	beta-1,4-galactosyltransferase 1	protein coding gene	no	.	3.697	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PICALM_LS007	chr11:85976682|85978070:-	PICALM	phosphatidylinositol binding clathrin assembly protein	protein coding gene	no	ENST00000532317.5;ENST00000530692.5;ENST00000529760.5;ENST00000526961.5;ENST00000526907.1	51.396	45.370	106.207	0.992(9505)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip;intron_retention	yes
UN_RNF207_LS0013	chr1:6209539|6209929:+	RNF207	ring finger protein 207	protein coding gene	no	.	3.005	0.849	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
SYCP2_LS037	chr20:59885964|59886707:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000357552.7;ENST00000371001.6;ENST00000446834.5;ENST00000474749.1	6.383	1.297	2.676	0.281(2689)	0.274(192)	0.849(14751)	non tumor-specific	nAS	yes
MEIS3_LS024	chr19:47417350|47419070:-	MEIS3	Meis homeobox 3 pseudogene 1	protein coding gene	no	ENST00000441740.6;ENST00000331559.9;ENST00000561293.5;ENST00000558555.5;ENST00000559524.5;ENST00000557833.1	1.995	1.774	6.469	0.789(7564)	0.809(568)	0.892(15512)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MNT_LS0048	chr17:2400843|2400990:-	MNT	MAX network transcriptional repressor	protein coding gene	yes	.	0.970	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
IL17RE_LS002	chr3:9903064|9903397:+	IL17RE	interleukin 17 receptor E	protein coding gene	no	ENST00000421412.5;ENST00000383814.7;ENST00000489181.5;ENST00000454190.6;ENST00000454992.1	7.328	9.588	6.397	0.718(6882)	0.885(621)	0.804(13975)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC246787.2_UP_LS1502	chr14:105743081|105863819:+	AC246787.2	-	lncRNA gene	no	.	72.434	3.045	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDH2_LS017	chr12:111813151|111813211:+	ALDH2	aldehyde dehydrogenase 2 family member	protein coding gene	no	ENST00000551450.1	0.413	0.159	0.716	0.098(941)	0.34(239)	0.167(2901)	non tumor-specific	nAS	yes
TM9SF2_LS021	chr13:99555647|99559363:+	TM9SF2	transmembrane 9 superfamily member 2	protein coding gene	no	ENST00000642475.1;ENST00000376387.4	479.286	320.409	154.295	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ADGRF1_LS009	chr6:47014844|47016617:-	ADGRF1	adhesion G protein-coupled receptor F1	protein coding gene	yes	ENST00000371253.6;ENST00000419892.6;ENST00000449332.6;ENST00000283297.5;ENST00000471487.5	9.255	13.102	4.196	0.399(3825)	0.672(472)	0.186(3234)	non tumor-specific	exon_skip;intron_retention	yes
BCAS3_LS046	chr17:61084564|61087148:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	ENST00000588008.1	0.251	0.097	0.667	0.11(1053)	0.107(75)	0.055(957)	non tumor-specific	nAS	yes
TEPP_LS001	chr16:57976634|57977815:+	TEPP	testis, prostate and placenta expressed	protein coding gene	no	ENST00000290871.9;ENST00000441824.2	1.138	0.000	0.775	0(2)	0(0)	0.009(159)	non tumor-specific	nAS	yes
TIAM2_LS045	chr6:155250624|155250913:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000529824.6	1.143	0.485	0.811	0.014(137)	0.037(26)	0.145(2519)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_MIATNB_LS0015	chr22:26699138|26717253:+	MIATNB	MIAT neighbor	lncRNA gene	no	.	1.897	0.396	0.000	0.01(98)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_GPR78_UP_LS0007	chr4:8515583|8515893:+	GPR78	G protein-coupled receptor 78	protein coding gene	no	.	3.189	0.094	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SHC1_LS0055	chr1:154973508|154973612:-	SHC1	SHC adaptor protein 1	protein coding gene	no	.	3.591	0.285	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_TUBA1C_UP_LS0041	chr12:49128532|49185418:+	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	7.438	0.645	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
ANK1_LS038	chr8:41696773|41698043:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000347528.8;ENST00000289734.12;ENST00000265709.13;ENST00000520299.5	5.823	0.978	1.673	0.16(1530)	0.044(31)	0.528(9186)	non tumor-specific	nAS	yes
UN_ATG10_UP_LS0010	chr5:81875520|81892686:+	ATG10	autophagy related 10	protein coding gene	no	.	1.744	1.785	0.000	0.03(292)	0.088(62)	0(0)	non tumor-specific	nAS	no
FANCI_LS044	chr15:89293997|89294915:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	ENST00000310775.11;ENST00000566895.5	21.285	3.627	3.878	0.961(9206)	0.829(582)	0.911(15836)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ENPP6_UP_LS0022	chr4:184272017|184275821:-	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein coding gene	no	.	3.407	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
SEPT2_LS061	chr2:241350203|241351967:+	SEPT2	septin 6	protein coding gene	no	ENST00000391973.6;ENST00000360051.7;ENST00000616972.4;ENST00000391971.6;ENST00000401990.5;ENST00000407971.5;ENST00000402092.6;ENST00000421717.1	454.324	287.034	186.654	0.996(9539)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CASC4_LS015	chr15:44379788|44380806:+	CASC4	golgi membrane protein 2	protein coding gene	no	ENST00000299957.10;ENST00000650436.1;ENST00000345795.6;ENST00000558847.1	139.640	115.473	75.927	0.982(9405)	0.994(698)	0.979(17014)	non tumor-specific	exon_skip	yes
CLEC2D_LS003	chr12:9669795|9680190:+	CLEC2D	C-type lectin domain family 2 member D	protein coding gene	no	ENST00000492359.6	0.135	0.091	0.822	0.116(1107)	0.091(64)	0.076(1318)	non tumor-specific	alt_3prime;exon_skip	yes
PLEKHA4_LS001	chr19:48837551|48838017:-	PLEKHA4	pleckstrin homology domain containing A4	protein coding gene	no	ENST00000355496.9;ENST00000263265.10;ENST00000597129.1;ENST00000601146.1	29.522	15.881	37.194	0.97(9292)	0.97(681)	0.971(16881)	non tumor-specific	alt_5prime	yes
UN_PTPN5_LS0010	chr11:18747038|18765807:-	PTPN5	protein tyrosine phosphatase non-receptor type 5	protein coding gene	no	.	1.224	0.559	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RNU6-1187P_UP_LS0005	chr4:77154976|77157583:-	RNU6-1187P	RNA, U6 small nuclear 1187, pseudogene	small non-coding RNA gene	no	.	3.201	0.434	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MLF2_LS0090	chr12:6748862|6748895:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	4.204	0.112	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PAICS_LS0031	chr4:56460424|56462711:-	PAICS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein coding gene	no	.	1.626	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SP110_LS008	chr2:230171767|230172066:-	SP110	SP110 nuclear body protein	protein coding gene	no	ENST00000258381.10	0.900	0.921	1.463	0.515(4934)	0.705(495)	0.676(11747)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
PPP1R10_LS002	chr6:30602691|30602846:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	ENST00000376511.6	72.015	47.908	32.901	0.992(9509)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
BCS1L_LS038	chr2:218662260|218662510:+	BCS1L	BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone	protein coding gene	no	ENST00000443791.5;ENST00000359273.7;ENST00000392109.5;ENST00000392110.6;ENST00000392111.6;ENST00000412366.5;ENST00000439945.5;ENST00000431802.5;ENST00000471576.5;ENST00000436603.1	65.827	33.241	44.917	0.997(9552)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC090403.1_LS011	chr18:27592874|27594950:-	AC090403.1	-	lncRNA gene	no	ENST00000580883.1	0.769	0.344	1.396	0.001(6)	0.001(1)	0.028(488)	non tumor-specific	nAS	yes
HMGN5_LS007	chrX:81118759|81119788:-	HMGN5	high mobility group nucleosome binding domain 5	protein coding gene	yes	ENST00000358130.6;ENST00000430960.5;ENST00000436386.5;ENST00000451455.1	18.072	14.233	12.972	0.935(8954)	0.99(695)	0.957(16627)	non tumor-specific	alt_3prime;exon_skip	yes
UBE2Q2_LS005	chr15:75844589|75854386:+	UBE2Q2	ubiquitin conjugating enzyme E2 Q2	protein coding gene	no	ENST00000562635.1	0.134	0.018	0.675	0.066(632)	0.077(54)	0.099(1728)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_RPLP0P6_LS0048	chr2:38482088|38482544:-	RPLP0P6	ribosomal protein lateral stalk subunit P0 pseudogene 6	pseudogene	no	.	6.733	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CBWD2_LS0016	chr2:113462494|113482177:+	CBWD2	COBW domain containing 2	protein coding gene	no	.	9.112	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
BICC1_LS009	chr10:58789933|58793484:+	BICC1	BicC family RNA binding protein 1	protein coding gene	no	ENST00000373886.7	8.989	10.301	5.899	0.513(4913)	0.766(538)	0.8(13898)	non tumor-specific	nAS	yes
UN_ESYT2_LS0056	chr7:158782022|158782115:+	ESYT2	extended synaptotagmin 2	protein coding gene	no	.	11.430	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARMCX5-GPRASP2_LS0006	chrX:102605653|102639405:+	ARMCX5-GPRASP2	ARMCX5-GPRASP2 readthrough	lncRNA gene	no	.	2.077	0.696	0.000	0.014(132)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_ZBTB24_LS0007	chr6:109476253|109481075:-	ZBTB24	zinc finger and BTB domain containing 24	protein coding gene	no	.	2.438	0.202	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP002748.3_LS0001	chr11:66473925|66478024:+	AP002748.3	-	lncRNA gene	no	.	0.690	0.244	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PNPLA6_LS0045	chr19:7561560|7561614:+	PNPLA6	patatin like phospholipase domain containing 6	protein coding gene	no	.	31.637	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
KHDRBS3_LS008	chr8:135557587|135581878:+	KHDRBS3	KH RNA binding domain containing, signal transduction associated 3	protein coding gene	no	ENST00000355849.9;ENST00000524199.5;ENST00000517859.5;ENST00000524282.1;ENST00000522079.5	22.705	14.168	23.868	0.956(9160)	0.993(697)	0.952(16553)	non tumor-specific	exon_skip	yes
UN_RPLP0_LS0015	chr12:120196875|120196906:+	RPLP0	ribosomal protein lateral stalk subunit P0	protein coding gene	no	.	65.811	14.659	0.000	0.043(408)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_KCNH8_UP_LS0015	chr3:18966407|19075965:+	KCNH8	potassium voltage-gated channel subfamily H member 8	protein coding gene	no	.	3.718	0.169	0.000	0.024(231)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KLHL4_LS0003	chrX:87547817|87600039:-	KLHL4	kelch like family member 4	protein coding gene	no	.	2.699	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_YY1AP1_LS0034	chr1:155670464|155671306:-	YY1AP1	YY1 associated protein 1	protein coding gene	yes	.	4.562	0.407	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
ATP5F1A_LS013	chr18:46089732|46091682:-	ATP5F1A	ATP synthase F1 subunit alpha	protein coding gene	no	.;.	80.565	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
COL16A1_LS017	chr1:31660638|31661066:-	COL16A1	collagen type XVI alpha 1 chain	protein coding gene	no	ENST00000373672.7;ENST00000488128.6;ENST00000488897.5;ENST00000440437.1;ENST00000466829.5;ENST00000470799.5;ENST00000482910.1	45.844	34.914	110.090	0.966(9255)	0.983(690)	0.957(16634)	non tumor-specific	exon_skip	yes
CHST3_LS001	chr10:71964694|72005736:+	CHST3	carbohydrate sulfotransferase 3	protein coding gene	no	ENST00000373115.4	1.081	0.973	3.575	0.64(6132)	0.745(523)	0.826(14361)	non tumor-specific	nAS	yes
HECW2_LS028	chr2:196325090|196329575:-	HECW2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000647314.1	1.979	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_AC093827.5_LS0005	chr4:86891593|86892605:-	AC093827.5	-	protein coding gene	no	.	1.473	0.315	0.000	0.003(29)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_DHX35_LS0015	chr20:39001819|39002772:+	DHX35	DEAH-box helicase 35	protein coding gene	no	.	2.300	0.277	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_FANCI_LS0069	chr15:89316625|89316706:-	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	.	6.557	0.339	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SPSB2_LS0003	chr12:6871319|6872664:-	SPSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein coding gene	no	.	3.944	0.170	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
CNTRL_LS056	chr9:121175224|121177163:+	CNTRL	centriolin	protein coding gene	no	ENST00000373855.5;ENST00000238341.9;ENST00000373850.5;ENST00000373845.6;ENST00000613863.4	21.191	7.504	21.426	0.972(9308)	0.977(686)	0.978(17001)	non tumor-specific	nAS	yes
UN_RAB1B_LS0043	chr11:66276155|66276246:-	RAB1B	RAB1B, member RAS oncogene family	protein coding gene	no	.	1.451	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM86B1_LS0001	chr8:12182440|12182473:+	FAM86B1	family with sequence similarity 86 member B1	protein coding gene	no	.	31.968	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC007881.1_UP_LS0005	chr2:71160225|71160503:+	AC007881.1	-	pseudogene	no	.	3.648	0.572	0.000	0.035(335)	0.009(6)	0(0)	non tumor-specific	nAS	no
CALHM2_LS016	chr10:103451285|103452156:-	CALHM2	calcium homeostasis modulator family member 2	protein coding gene	no	ENST00000260743.9;ENST00000461631.1	5.075	3.837	7.613	0.844(8086)	0.905(635)	0.934(16242)	non tumor-specific	alt_3prime;exon_skip	yes
EYA1_LS034	chr8:71535848|71547864:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000645793.1;ENST00000643681.1;ENST00000644712.1;ENST00000519927.5	1.045	0.051	1.071	0.033(320)	0.007(5)	0.066(1151)	non tumor-specific	nAS	yes
UN_SPINK14_UP_LS0004	chr5:148020849|148065347:+	SPINK14	serine peptidase inhibitor Kazal type 14 (putative)	protein coding gene	no	.	4.518	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip	no
POLR2A_LS001	chr17:7484857|7495941:+	POLR2A	RNA polymerase II subunit A	protein coding gene	no	ENST00000617998.4;ENST00000572844.1	26.084	19.016	21.444	0.917(8784)	0.973(683)	0.977(16983)	non tumor-specific	nAS	yes
SAMD4A_LS003	chr14:54652840|54668792:+	SAMD4A	sterile alpha motif domain containing 4A	protein coding gene	no	ENST00000555091.1	1.178	0.006	0.609	0.007(64)	0.01(7)	0.019(326)	non tumor-specific	exon_skip	yes
ZSWIM8_LS012	chr10:73793698|73793865:+	ZSWIM8	zinc finger SWIM-type containing 8	protein coding gene	no	ENST00000433366.6	0.564	0.908	2.119	0.075(714)	0.111(78)	0.855(14859)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MYO7A_LS055	chr11:77208517|77208697:+	MYO7A	myosin VIIA	protein coding gene	no	ENST00000409709.8;ENST00000458637.6;ENST00000409619.6;ENST00000481328.7;ENST00000458169.2;ENST00000605744.1	8.035	7.454	7.413	0.821(7869)	0.749(526)	0.925(16070)	non tumor-specific	alt_3prime	yes
UN_MIR4300HG_LS0004	chr11:81951956|81970381:+	MIR4300HG	MIR4300 host gene	lncRNA gene	no	.	3.056	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
MTMR2_LS014	chr11:95865676|95866403:-	MTMR2	myotubularin related protein 2	protein coding gene	no	ENST00000497683.5;ENST00000470293.5	0.127	0.083	0.669	0.141(1355)	0.125(88)	0.133(2311)	non tumor-specific	alt_5prime;exon_skip	yes
LINC00887_LS002	chr3:194300517|194301476:-	LINC00887	long intergenic non-protein coding RNA 887	lncRNA gene	no	ENST00000429578.5	0.018	0.000	0.625	0.03(285)	0(0)	0.004(71)	non tumor-specific	nAS	yes
UN_PPP2R1A_LS0082	chr19:52219755|52220996:+	PPP2R1A	protein phosphatase 2 scaffold subunit Aalpha	protein coding gene	yes	.	87.259	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CBLC_LS0015	chr19:44782487|44784264:+	CBLC	Cbl proto-oncogene C	protein coding gene	no	.	9.120	0.050	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
C16orf58_LS007	chr16:31493048|31493467:-	C16orf58	RUS family member 1	protein coding gene	no	ENST00000570164.5;ENST00000327237.6;ENST00000430477.6;ENST00000567994.5	118.589	77.460	50.626	0.995(9530)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_HMGA1_LS0163	chr6:34245359|34245480:-	HMGA1	high mobility group AT-hook 1	protein coding gene	yes	.	4.102	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM259_LS025	chr19:1014473|1020772:-	TMEM259	transmembrane protein 259	protein coding gene	no	ENST00000356663.7;ENST00000593068.7;ENST00000333175.9;ENST00000356663.7;ENST00000593068.7;ENST00000333175.9	68.338	40.571	225.223	0.987(9457)	0.991(696)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC147876.1_UP_LS0011	chr4:3826904|3829236:+	AC147876.1	-	pseudogene	no	.	8.175	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CBWD1_LS031	chr9:162469|164403:-	CBWD1	COBW domain containing 1	protein coding gene	no	ENST00000616803.4	0.172	0.034	0.649	0.048(459)	0.058(41)	0.057(997)	non tumor-specific	nAS	yes
LYPLA1_LS010	chr8:54055133|54063328:-	LYPLA1	lysophospholipase 1	protein coding gene	no	ENST00000519891.5;ENST00000517297.5	0.042	0.052	0.854	0.514(4921)	0.459(322)	0.407(7081)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PEX10_LS0004	chr1:2404188|2404814:-	PEX10	peroxisomal biogenesis factor 10	protein coding gene	no	.	2.646	0.588	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DOCK7_LS031	chr1:62513606|62513716:-	DOCK7	dedicator of cytokinesis 7	protein coding gene	no	ENST00000251157.10;ENST00000454575.6;ENST00000340370.10;ENST00000637255.1;ENST00000634264.1;ENST00000635123.1;ENST00000635253.1;ENST00000637208.1;ENST00000635286.1	14.511	9.731	13.111	0.931(8923)	0.969(680)	0.95(16513)	non tumor-specific	exon_skip	yes
TNXB_LS049	chr6:32093456|32095076:-	TNXB	tenascin XB	protein coding gene	no	ENST00000479795.1	0.368	0.214	0.753	0.026(253)	0.134(94)	0.178(3091)	non tumor-specific	nAS	yes
UN_CS_LS0005	chr12:56271995|56272133:+	CS	citrate synthase	protein coding gene	no	.	4.593	0.031	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ATP6V1E1_LS0023	chr22:17613316|17619461:-	ATP6V1E1	ATPase H+ transporting V1 subunit E1	protein coding gene	no	.	66.363	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MIR4650-1_UP_LS0018	chr7:67236570|67292463:-	MIR4650-1	microRNA 4650-1	small non-coding RNA gene	no	.	1.129	0.251	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
SMUG1_LS058	chr12:54188596|54188726:-	SMUG1	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein coding gene	no	ENST00000513838.5	0.047	0.033	0.709	0.559(5351)	0.48(337)	0.22(3832)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DNAH17_LS048	chr17:78480786|78484868:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6	3.361	1.435	0.952	0.074(713)	0.03(21)	0.131(2275)	non tumor-specific	nAS	yes
UN_COL6A2_LS0007	chr21:46098957|46111450:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	.	8.277	0.236	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
KCTD19_LS013	chr16:67300182|67301791:-	KCTD19	potassium channel tetramerization domain containing 19	protein coding gene	no	ENST00000562860.1	0.619	0.000	0.582	0(2)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_SEPT4-AS1_LS0004	chr17:58543598|58544432:+	SEPT4-AS1	SEPTIN4 antisense RNA 1	lncRNA gene	no	.	3.585	0.329	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
NANOGNB_LS004	chr12:7770518|7773800:+	NANOGNB	NANOG neighbor homeobox	protein coding gene	no	ENST00000382119.1;ENST00000640040.1	10.074	0.194	0.729	0.009(83)	0.001(1)	0.001(9)	non tumor-specific	nAS	yes
MTSS1_LS025	chr8:124565759|124567071:-	MTSS1	MTSS I-BAR domain containing 1	protein coding gene	yes	ENST00000378017.7;ENST00000518547.5;ENST00000325064.9;ENST00000431961.6;ENST00000524090.5;ENST00000523179.5;ENST00000522118.1	28.921	22.919	21.210	0.914(8756)	0.98(688)	0.974(16936)	non tumor-specific	nAS	yes
UN_SH3PXD2A_LS0102	chr10:103720870|103724270:-	SH3PXD2A	SH3 and PX domains 2A	protein coding gene	no	.	2.791	0.000	0.000	0.005(45)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AP3S2_LS014	chr15:89878300|89888521:-	AP3S2	adaptor related protein complex 3 subunit sigma 2	protein coding gene	no	ENST00000558011.5;ENST00000558999.5	0.201	0.584	1.961	0.866(8297)	0.917(644)	0.84(14602)	non tumor-specific	exon_skip	yes
UN_AL445363.1_UP_LS0006	chr14:34554912|34557071:-	AL445363.1	-	lncRNA gene	no	.	1.154	0.994	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
IL1A_LS005	chr2:112782764|112783724:-	IL1A	interleukin 1 alpha	protein coding gene	no	ENST00000263339.3	4.927	2.878	1.307	0.285(2729)	0.264(185)	0.217(3766)	non tumor-specific	nAS	yes
NDUFV1_LS015	chr11:67607076|67608400:+	NDUFV1	NADH:ubiquinone oxidoreductase core subunit V1	protein coding gene	no	ENST00000532244.5;ENST00000524838.5;ENST00000534139.5;ENST00000530638.1;ENST00000532244.5;ENST00000524838.5;ENST00000534139.5;ENST00000530638.1;ENST00000532244.5;ENST00000524838.5;ENST00000534139.5;ENST00000530638.1	0.149	0.487	2.829	0.904(8664)	0.952(668)	0.921(16002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FMNL1_LS0040	chr17:45242459|45243112:-	FMNL1	formin like 1	protein coding gene	no	.	1.082	0.314	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TUBBP5_LS0034	chr9:138176347|138176884:+	TUBBP5	tubulin beta pseudogene 5	pseudogene	no	.	2.928	0.373	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_P4HA2_LS0056	chr5:132266545|132270718:+	P4HA2	prolyl 4-hydroxylase subunit alpha 2	protein coding gene	no	.	14.687	0.806	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC104461.1_LS002	chr1:200411962|200444618:+	AC104461.1	-	lncRNA gene	no	ENST00000647823.1	2.000	0.115	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_ZC3H18_LS0001	chr16:88570566|88571614:+	ZC3H18	zinc finger CCCH-type containing 18	protein coding gene	no	.	2.474	0.054	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC091182.2_UP_LS0001	chr8:37407019|37410347:-	AC091182.2	-	lncRNA gene	no	.	3.466	0.188	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
MST1_LS015	chr3:49685382|49685471:-	MST1	serine/threonine kinase 4	protein coding gene	yes	ENST00000449682.2;ENST00000492329.5;ENST00000488350.6;ENST00000481930.6;ENST00000484269.5;ENST00000498021.1	21.130	35.928	19.356	0.965(9249)	0.943(662)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FMO2_LS012	chr1:171205634|171207718:+	FMO2	flavin containing dimethylaniline monoxygenase 4	protein coding gene	no	ENST00000209929.9;ENST00000529935.5	6.440	34.230	17.141	0.508(4871)	0.853(599)	0.872(15158)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_GMDS-DT_LS0017	chr6:2263684|2271816:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	.	1.859	0.106	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC012618.3_LS007	chr19:12234824|12237090:+	AC012618.3	-	pseudogene	no	ENST00000426044.1	2.768	2.236	1.493	0.527(5048)	0.708(497)	0.672(11683)	non tumor-specific	nAS	yes
UN_RELT_LS0015	chr11:73392468|73393813:+	RELT	RELT TNF receptor	protein coding gene	no	.	2.771	0.315	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MYO16_LS011	chr13:108823278|108844343:+	MYO16	myosin XVI	protein coding gene	no	ENST00000356711.6;ENST00000457511.6;ENST00000251041.9;ENST00000357550.3;ENST00000375857.6	6.591	0.577	1.110	0.064(617)	0.011(8)	0.151(2632)	non tumor-specific	alt_3prime	yes
GOPC_LS007	chr6:117575352|117577448:-	GOPC	golgi associated PDZ and coiled-coil motif containing	protein coding gene	yes	ENST00000368498.6;ENST00000535237.2	3.159	3.564	2.568	0.603(5781)	0.816(573)	0.747(12976)	non tumor-specific	exon_skip	yes
UN_AAR2_LS0036	chr20:36256528|36256623:-	AAR2	AAR2 splicing factor	protein coding gene	no	.	1.798	0.377	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
CEP95_LS012	chr17:64514358|64519321:+	CEP95	centrosomal protein 95	protein coding gene	no	ENST00000579860.5;ENST00000580188.1;ENST00000579860.5;ENST00000580188.1	0.654	0.706	6.708	0.881(8444)	0.896(629)	0.954(16580)	non tumor-specific	alt_3prime;exon_skip	yes
FHOD3_LS013	chr18:36625749|36681436:+	FHOD3	formin homology 2 domain containing 3	protein coding gene	no	ENST00000592930.5	0.440	0.357	1.526	0.496(4752)	0.577(405)	0.58(10083)	non tumor-specific	exon_skip	yes
C12orf73_LS005	chr12:103951630|103956631:-	C12orf73	chromosome 12 open reading frame 73	protein coding gene	no	ENST00000378090.8;ENST00000549478.1;ENST00000553183.5;ENST00000547945.5;ENST00000378090.8;ENST00000549478.1;ENST00000553183.5;ENST00000547945.5	5.785	1.763	9.548	0.907(8688)	0.922(647)	0.974(16927)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC063949.2_LS0012	chr12:92479888|92482512:-	AC063949.2	-	lncRNA gene	no	.	1.772	0.926	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAHD2A_LS016	chr2:95410586|95410864:+	FAHD2A	fumarylacetoacetate hydrolase domain containing 2A	protein coding gene	no	ENST00000447036.5;ENST00000233379.8	62.027	48.275	25.720	0.994(9523)	0.997(700)	0.979(17010)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC00491_LS0002	chr5:102611955|102671227:-	LINC00491	long intergenic non-protein coding RNA 491	lncRNA gene	no	.	0.523	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
STAT2_LS041	chr12:56356285|56356441:-	STAT2	signal transducer and activator of transcription 2	protein coding gene	no	ENST00000314128.8;ENST00000557235.5;ENST00000418572.6;ENST00000556140.5	31.116	15.082	37.449	0.971(9304)	0.989(694)	0.978(17006)	non tumor-specific	alt_3prime	yes
CD82_LS012	chr11:44585292|44587475:+	CD82	CD82 molecule	protein coding gene	yes	ENST00000527737.5	0.180	0.183	0.740	0.125(1199)	0.094(66)	0.158(2738)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ROBO4_LS001	chr11:124884913|124885041:-	ROBO4	roundabout guidance receptor 4	protein coding gene	no	ENST00000306534.7;ENST00000534407.5;ENST00000533054.5	21.174	29.699	41.270	0.951(9111)	0.983(690)	0.949(16496)	non tumor-specific	alt_3prime	yes
UN_GRM7_LS0030	chr3:7146668|7208216:+	GRM7	glutamate metabotropic receptor 7	protein coding gene	no	.	6.357	0.851	0.000	0.007(71)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
TMEM256_LS004	chr17:7403689|7404000:-	TMEM256	transmembrane protein 256	protein coding gene	no	ENST00000302422.3;ENST00000576017.1	190.650	126.670	117.024	0.984(9431)	0.987(693)	0.979(17021)	non tumor-specific	nAS	yes
UN_AFAP1_LS0032	chr4:7829121|7830354:+	AFAP1	actin filament associated protein 1	protein coding gene	no	.	3.879	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC52A1_LS007	chr17:5033866|5034861:-	SLC52A1	solute carrier family 52 member 1	protein coding gene	no	.;.	0.634	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF595_LS0044	chr4:86631|86968:-	ZNF595	zinc finger protein 595	protein coding gene	no	.	3.724	0.288	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
NOL8_LS019	chr9:92316138|92318618:-	NOL8	nucleolar protein 8	protein coding gene	no	ENST00000442668.6;ENST00000358855.8;ENST00000536593.5;ENST00000545558.5;ENST00000360868.7;ENST00000544867.5;ENST00000535387.5;ENST00000542053.5;ENST00000432670.6;ENST00000434228.5;ENST00000433029.6;ENST00000467230.1;ENST00000421075.6;ENST00000445919.6;ENST00000411621.6;ENST00000535807.5	14.691	7.767	10.615	0.954(9138)	0.97(681)	0.966(16795)	non tumor-specific	alt_3prime	yes
UN_MRPS18A_LS0003	chr6:43675252|43675494:-	MRPS18A	mitochondrial ribosomal protein S18A	protein coding gene	no	.	17.914	6.642	0.000	0.042(407)	0.051(36)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CDC7_LS008	chr1:91501303|91501654:+	CDC7	cell division cycle 7	protein coding gene	no	ENST00000428239.5;ENST00000426137.1;ENST00000428239.5;ENST00000426137.1	0.356	0.144	0.830	0.466(4463)	0.224(157)	0.171(2964)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_GTF2IP20_LS0080	chr1:223962273|223971574:-	GTF2IP20	general transcription factor IIi pseudogene 20	pseudogene	no	.	2.491	0.881	0.000	0.024(230)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SPOCK2_LS0095	chr10:72061631|72061808:+	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	.	2.045	0.292	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
BIRC7_LS007	chr20:63238002|63238396:+	BIRC7	baculoviral IAP repeat containing 7	protein coding gene	no	ENST00000342412.10;ENST00000217169.7;ENST00000342412.10;ENST00000217169.7	33.792	1.697	1.549	0.413(3960)	0.164(115)	0.465(8076)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
AL121987.2_LS004	chr1:160208387|160208844:-	AL121987.2	-	lncRNA gene	no	ENST00000418602.1	0.348	0.023	0.664	0.001(8)	0.003(2)	0.014(241)	non tumor-specific	nAS	yes
UN_IGKV3D-7_UP_LS0004	chr2:90100635|90221280:+	IGKV3D-7	immunoglobulin kappa variable 3D-7	no	no	.	163.692	1.187	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
CASP3_LS002	chr4:184629501|184631765:-	CASP3	caspase 3	protein coding gene	no	ENST00000393585.6;ENST00000517513.5;ENST00000393588.8	0.650	0.457	0.876	0.732(7016)	0.741(520)	0.409(7101)	non tumor-specific	exon_skip	yes
UN_SPATA6_LS0009	chr1:48359770|48373674:-	SPATA6	spermatogenesis associated 6	protein coding gene	no	.	2.943	1.770	0.000	0.005(51)	0.013(9)	0(0)	non tumor-specific	alt_5prime	no
UN_DNAH6_LS0010	chr2:84529166|84536449:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	.	1.240	0.436	0.000	0.005(48)	0.016(11)	0(0)	non tumor-specific	nAS	no
KIAA2012_LS008	chr2:202099796|202100307:+	KIAA2012	KIAA2012	protein coding gene	no	ENST00000459709.5;ENST00000409515.3;ENST00000541917.6;ENST00000498697.2	3.595	2.977	1.886	0.015(144)	0.058(41)	0.128(2226)	non tumor-specific	nAS	yes
KIAA0586_LS031	chr14:58474797|58477123:+	KIAA0586	KIAA0586	protein coding gene	no	ENST00000354386.10;ENST00000556134.5;ENST00000619722.4;ENST00000619416.4;ENST00000423743.7;ENST00000261244.9;ENST00000538571.6	9.528	5.135	5.329	0.843(8080)	0.9(632)	0.959(16673)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SLC39A7_LS0016	chr6:33201295|33201345:-	SLC39A7	solute carrier family 39 member 7	protein coding gene	no	.	3.500	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL035413.2_UP_LS0006	chr1:19267444|19282786:+	AL035413.2	-	pseudogene	no	.	1.552	2.116	0.000	0.004(37)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_RASGRP1_LS0016	chr15:38560005|38563710:-	RASGRP1	RAS guanyl releasing protein 1	protein coding gene	no	.	0.949	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
USP14_LS016	chr18:192900|196637:+	USP14	ubiquitin specific peptidase 14	protein coding gene	no	ENST00000582707.5;ENST00000400266.7;ENST00000578942.5;ENST00000383589.6;ENST00000261601.7	44.706	25.032	27.301	0.982(9412)	0.991(696)	0.978(16997)	non tumor-specific	exon_skip	yes
SNX22_LS014	chr15:64152742|64153652:+	SNX22	sorting nexin 22	protein coding gene	no	.;.;.	0.334	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PIK3C3_LS036	chr18:42067513|42081123:+	PIK3C3	phosphatidylinositol 3-kinase catalytic subunit type 3	protein coding gene	no	ENST00000262039.8;ENST00000398870.7;ENST00000593098.5;ENST00000588631.5;ENST00000588156.5;ENST00000587328.2	8.187	6.594	44.114	0.975(9339)	0.98(688)	0.979(17020)	non tumor-specific	exon_skip	yes
ENTPD3_LS006	chr3:40394431|40400894:+	ENTPD3	ectonucleoside triphosphate diphosphohydrolase 3	protein coding gene	no	ENST00000439533.5	0.003	0.000	0.687	0(1)	0(0)	0.001(23)	non tumor-specific	nAS	yes
PARVB_LS007	chr22:44069162|44093928:+	PARVB	parvin beta	protein coding gene	no	ENST00000404989.1	0.440	0.279	1.016	0.211(2017)	0.286(201)	0.191(3317)	non tumor-specific	nAS	yes
SSXP9_LS002	chrX:48324200|48326579:+	SSXP9	SSX family pseudogene 9	pseudogene	no	ENST00000417503.1	3.596	0.000	0.843	0.002(19)	0(0)	0(7)	non tumor-specific	nAS	yes
AP003119.2_LS003	chr11:76782856|76783003:-	AP003119.2	-	lncRNA gene	no	ENST00000528075.1	0.290	0.248	1.607	0.539(5166)	0.521(366)	0.601(10453)	non tumor-specific	nAS	yes
AC083798.2_LS005	chr3:122425658|122425848:+	AC083798.2	-	lncRNA gene	no	ENST00000608015.1	0.400	0.287	0.820	0.485(4644)	0.444(312)	0.43(7469)	non tumor-specific	nAS	yes
SERPINB12_LS007	chr18:63565612|63566607:+	SERPINB12	serpin family B member 12	protein coding gene	no	ENST00000269491.5;ENST00000382768.1	5.865	8.320	20.464	0.069(664)	0.051(36)	0.146(2534)	non tumor-specific	nAS	yes
UN_GRN_LS0117	chr17:44351411|44351575:-	GRN	granulin precursor	protein coding gene	no	.	6.539	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C15orf39_LS0088	chr15:75211367|75211406:-	C15orf39	chromosome 15 open reading frame 39	protein coding gene	no	.	2.701	0.086	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
FKBP8_LS013	chr19:18539459|18541679:-	FKBP8	FKBP prolyl isomerase 8	protein coding gene	no	ENST00000601844.5	0.405	0.492	1.114	0.219(2099)	0.217(152)	0.606(10531)	non tumor-specific	exon_skip	yes
PTPN20_LS007	chr10:46911842|46940623:+	PTPN20	protein tyrosine phosphatase non-receptor type 20	protein coding gene	no	ENST00000503851.5;ENST00000509774.5;ENST00000511769.5;ENST00000513156.5	0.070	0.004	0.665	0.035(337)	0.063(44)	0.04(699)	non tumor-specific	nAS	yes
DRAM1_LS003	chr12:101890221|101897863:+	DRAM1	DNA damage regulated autophagy modulator 1	protein coding gene	no	ENST00000549365.1	4.276	2.477	1.509	0.195(1871)	0.319(224)	0.624(10851)	non tumor-specific	exon_skip	yes
CCDC36_LS008	chr3:49244452|49244646:+	CCDC36	interactor of HORMAD1 1	protein coding gene	no	ENST00000296449.9;ENST00000438782.5;ENST00000452691.6	2.134	0.869	1.528	0.065(625)	0.145(102)	0.587(10200)	non tumor-specific	alt_3prime;exon_skip	yes
SHTN1_LS023	chr10:116979308|117048445:-	SHTN1	shootin 1	protein coding gene	no	ENST00000392901.10	2.326	0.000	0.936	0.021(199)	0(0)	0.013(219)	non tumor-specific	exon_skip	yes
ESRRG_LS014	chr1:216677491|216723244:-	ESRRG	estrogen related receptor gamma	protein coding gene	no	ENST00000408911.7	1.364	1.953	1.391	0.091(875)	0.386(271)	0.188(3262)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EPHX3_LS0012	chr19:15232256|15233352:-	EPHX3	epoxide hydrolase 3	protein coding gene	no	.	0.404	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
PLOD1_LS008	chr1:11952735|11954574:+	PLOD1	procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	protein coding gene	no	ENST00000358133.5	0.014	0.040	0.663	0.81(7759)	0.853(599)	0.125(2179)	non tumor-specific	exon_skip	yes
UN_AL928921.2_UP_LS0020	chr1:9485856|9644297:-	AL928921.2	-	lncRNA gene	no	.	3.222	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BMS1P9_LS002	chr9:63056103|63056350:+	BMS1P9	BMS1 pseudogene 9	pseudogene	no	ENST00000457640.1	0.388	0.109	0.716	0.019(179)	0.021(15)	0.022(386)	non tumor-specific	nAS	yes
UN_HEATR5A_LS0040	chr14:31313190|31318224:-	HEATR5A	HEAT repeat containing 5A	protein coding gene	no	.	0.230	0.052	0.000	0.01(94)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
COL12A1_LS059	chr6:75152031|75152131:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6;ENST00000419671.1	14.837	8.910	12.196	0.711(6812)	0.862(605)	0.831(14448)	non tumor-specific	nAS	yes
ZNF544_LS014	chr19:58246427|58246711:+	ZNF544	zinc finger protein 544	protein coding gene	no	ENST00000597240.5;ENST00000600775.5;ENST00000596652.5;ENST00000596929.5;ENST00000595981.5;ENST00000627781.2;ENST00000269829.5	18.899	7.757	10.350	0.977(9358)	0.994(698)	0.97(16869)	non tumor-specific	alt_3prime;intron_retention	yes
UN_FN1_LS0074	chr2:215365580|215375253:+	FN1	fibronectin 1	protein coding gene	no	.	8.004	0.573	0.000	0.009(83)	0.001(1)	0(0)	non tumor-specific	nAS	no
NADK_LS020	chr1:1756608|1756779:-	NADK	NAD kinase	protein coding gene	no	ENST00000469045.5	0.128	0.418	1.294	0.833(7981)	0.839(589)	0.641(11139)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SYNRG_LS044	chr17:37576418|37584648:-	SYNRG	synergin gamma	protein coding gene	no	ENST00000621136.4;ENST00000616179.4;ENST00000614941.4;ENST00000619541.4;ENST00000622045.4	0.485	0.511	1.254	0.525(5030)	0.575(404)	0.293(5096)	non tumor-specific	exon_skip	yes
UN_CRELD1_LS0017	chr3:9940634|9941362:-	CRELD1	cysteine rich with EGF like domains 1	protein coding gene	no	.	2.278	0.427	0.000	0.023(224)	0.009(6)	0(0)	non tumor-specific	nAS	no
PRKACB_LS020	chr1:84185182|84196616:+	PRKACB	protein kinase cAMP-activated catalytic subunit beta	protein coding gene	no	ENST00000370689.6;ENST00000370688.7;ENST00000370685.7;ENST00000470673.5;ENST00000370684.5;ENST00000436133.5;ENST00000446538.5;ENST00000610703.4;ENST00000370682.7;ENST00000394838.6;ENST00000432111.5;ENST00000450730.5;ENST00000370680.5;ENST00000413538.5;ENST00000417530.5;ENST00000614872.4;ENST00000394839.6;ENST00000610457.1	25.229	26.960	11.876	0.938(8991)	0.989(694)	0.965(16768)	non tumor-specific	exon_skip	yes
UN_TRIM14_LS0045	chr9:98087637|98087695:+	TRIM14	tripartite motif containing 14	protein coding gene	no	.	2.369	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TTLL5_LS035	chr14:75764772|75766062:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000557636.5;ENST00000298832.13;ENST00000555422.5;ENST00000556976.1;ENST00000556893.5;ENST00000554510.5;ENST00000557636.5;ENST00000298832.13;ENST00000555422.5;ENST00000556976.1;ENST00000556893.5;ENST00000554510.5	15.588	9.350	7.393	0.928(8894)	0.957(672)	0.964(16757)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HCN3_LS0001	chr1:155277868|155278141:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	.	1.560	0.113	0.000	0.009(87)	0.003(2)	0(0)	non tumor-specific	nAS	no
ATXN2_LS013	chr12:111456256|111457214:-	ATXN2	ataxin 2	protein coding gene	no	ENST00000642389.1;ENST00000389154.7;ENST00000389153.9;ENST00000608853.5;ENST00000377617.7;ENST00000616825.4;ENST00000643669.1;ENST00000550104.5;ENST00000483311.6;ENST00000647445.1;ENST00000482777.5;ENST00000535949.5;ENST00000542287.6;ENST00000550844.2;ENST00000468920.2;ENST00000643474.1;ENST00000643694.1;ENST00000551551.1;ENST00000550889.5	55.472	29.899	52.468	0.995(9530)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
MUC19_LS096	chr12:40520456|40520724:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9	2.839	0.264	0.800	0.002(19)	0.001(1)	0.044(764)	non tumor-specific	nAS	yes
UN_DHRS12_LS0003	chr13:51774034|51790011:-	DHRS12	dehydrogenase/reductase 12	protein coding gene	no	.	3.212	1.373	0.000	0.003(27)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
PCDH15_LS027	chr10:53828573|53831315:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000373965.6;ENST00000644397.1;ENST00000616114.4;ENST00000621708.4;ENST00000642496.1;ENST00000618301.4;ENST00000617271.4;ENST00000409834.5;ENST00000414367.5;ENST00000613657.4;ENST00000395445.5;ENST00000361849.7;ENST00000373956.7;ENST00000373957.7;ENST00000448885.5;ENST00000437009.5;ENST00000463095.2;ENST00000320301.10	4.966	0.191	1.748	0.061(586)	0.053(37)	0.176(3055)	non tumor-specific	exon_skip	yes
UN_RNA5SP365_UP_LS0001	chr12:89712279|89717237:+	RNA5SP365	RNA, 5S ribosomal pseudogene 365	no	no	.	1.505	0.458	0.000	0.047(450)	0.11(77)	0(0)	non tumor-specific	nAS	no
DUSP26_LS003	chr8:33597591|33599665:-	DUSP26	dual specificity phosphatase 28	protein coding gene	yes	ENST00000256261.8	4.303	2.929	8.111	0.278(2661)	0.554(389)	0.654(11361)	non tumor-specific	alt_3prime;exon_skip	yes
NOP14_LS020	chr4:2956811|2957606:-	NOP14	NOP14 nucleolar protein	protein coding gene	no	ENST00000416614.6;ENST00000314262.10;ENST00000502735.5;ENST00000398071.4	38.526	20.122	21.132	0.975(9345)	0.993(697)	0.976(16961)	non tumor-specific	nAS	yes
ABCC8_LS059	chr11:17460676|17461583:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000644772.1;ENST00000643562.1;ENST00000643878.1;ENST00000389817.7;ENST00000302539.9;ENST00000646993.1;ENST00000647015.1;ENST00000644757.1;ENST00000645760.1;ENST00000647013.1;ENST00000527905.5	3.246	1.234	2.030	0.12(1152)	0.164(115)	0.41(7133)	non tumor-specific	alt_5prime	yes
UN_AC023421.2_UP_LS0014	chr18:45780759|45782747:-	AC023421.2	-	lncRNA gene	no	.	3.977	1.381	0.000	0.023(223)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_MRPS31P1_UP_LS0009	chr3:40869702|40869884:+	MRPS31P1	mitochondrial ribosomal protein S31 pseudogene 1	pseudogene	no	.	1.490	0.167	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
INPP5K_LS019	chr17:1510513|1513872:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	ENST00000574955.1	0.001	0.000	0.642	0.003(26)	0.001(1)	0.017(292)	non tumor-specific	mutex_exons	yes
UN_DGKZ_LS0054	chr11:46380010|46380129:-	DGKZ	diacylglycerol kinase zeta	protein coding gene	no	.	2.499	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
HUS1_LS001	chr7:47964632|47965300:-	HUS1	HUS1 checkpoint clamp component	protein coding gene	no	ENST00000458191.5	13.572	6.466	11.160	0.901(8633)	0.925(649)	0.977(16978)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NUTF2_LS0005	chr16:67846985|67860461:+	NUTF2	nuclear transport factor 2	protein coding gene	no	.	0.753	0.013	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ZDHHC5_LS013	chr11:57690437|57692611:+	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	ENST00000527985.5;ENST00000287169.7;ENST00000528177.5;ENST00000529480.1	90.924	59.785	40.803	0.988(9469)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
CLSTN1_LS026	chr1:9756510|9773272:-	CLSTN1	calsyntenin 1	protein coding gene	no	ENST00000377298.8	9.569	11.748	15.308	0.853(8171)	0.954(670)	0.921(16003)	non tumor-specific	exon_skip	yes
C9orf57_LS004	chr9:72056843|72072661:-	C9orf57	chromosome 9 open reading frame 57	protein coding gene	no	ENST00000424431.3	0.149	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_HLA-DQA1_UP_LS0064	chr6:32519611|32554931:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	.	15.343	1.027	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01440_LS005	chr20:55438303|55448865:+	LINC01440	long intergenic non-protein coding RNA 1440	lncRNA gene	no	ENST00000416190.5	4.168	0.000	0.884	0(1)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_CARS2_LS0017	chr13:110646090|110646436:-	CARS2	cysteinyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	.	2.764	0.277	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_CUX1_LS0009	chr7:101881502|101882538:-	CUX1	cut like homeobox 1	protein coding gene	yes	.	3.681	3.980	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
DUXAP9_LS005	chr14:19062466|19092916:+	DUXAP9	double homeobox A pseudogene 9	pseudogene	no	ENST00000619210.1	0.585	0.132	1.013	0.639(6124)	0.452(317)	0.369(6407)	non tumor-specific	nAS	yes
PI4KA_LS013	chr22:20710858|20711341:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000477245.5;ENST00000399213.2;ENST00000482030.5;ENST00000255882.10;ENST00000477245.5;ENST00000399213.2;ENST00000482030.5	47.517	35.587	29.354	0.994(9528)	0.997(700)	0.977(16987)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SYTL2_LS010	chr11:85709500|85711113:-	SYTL2	synaptotagmin like 2	protein coding gene	no	ENST00000359152.9;ENST00000354566.7;ENST00000316356.8;ENST00000525702.5;ENST00000525423.5;ENST00000389959.8;ENST00000529581.5;ENST00000389958.7;ENST00000528231.5;ENST00000527523.5;ENST00000634661.1;ENST00000529534.5;ENST00000526999.5;ENST00000532221.5;ENST00000524911.5	12.407	17.734	6.217	0.871(8347)	0.902(633)	0.93(16162)	non tumor-specific	alt_5prime;exon_skip	yes
UN_OCEL1_LS0012	chr19:17228309|17228695:+	OCEL1	occludin/ELL domain containing 1	protein coding gene	no	.	4.799	0.400	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_FRS3_UP_LS0002	chr6:41840248|42126718:-	FRS3	fibroblast growth factor receptor substrate 3	protein coding gene	yes	.	7.324	2.113	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ST3GAL6_LS001	chr3:98732532|98756369:+	ST3GAL6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein coding gene	no	ENST00000489112.5	0.705	0.353	1.082	0.47(4505)	0.623(437)	0.501(8710)	non tumor-specific	exon_skip	yes
UN_SGSM2_LS0024	chr17:2361919|2362109:+	SGSM2	small G protein signaling modulator 2	protein coding gene	no	.	1.979	0.531	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_TFDP2_LS0060	chr3:142101841|142105837:-	TFDP2	transcription factor Dp-2	protein coding gene	no	.	0.862	0.086	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MIR6859-1_UP_LS0046	chr1:20466|190949:-	MIR6859-1	microRNA 6859-1	small non-coding RNA gene	no	.	2.380	0.278	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	nAS	no
TG_LS032	chr8:132929192|132933561:+	TG	thyroglobulin	protein coding gene	no	ENST00000220616.8;ENST00000523756.5;ENST00000519178.5;ENST00000220616.8;ENST00000523756.5;ENST00000519178.5;ENST00000220616.8;ENST00000523756.5;ENST00000519178.5	107.571	410.831	1.788	0.129(1233)	0.174(122)	0.677(11759)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_STON2_LS0036	chr14:81371185|81395886:-	STON2	stonin 2	protein coding gene	no	.	1.919	0.541	0.000	0.008(74)	0.016(11)	0(0)	non tumor-specific	alt_5prime	no
UN_ADAMTS6_LS0028	chr5:65460338|65481343:-	ADAMTS6	ADAM metallopeptidase with thrombospondin type 1 motif 6	protein coding gene	no	.	2.779	0.113	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ITGAX_LS032	chr16:31377079|31377182:+	ITGAX	integrin subunit alpha X	protein coding gene	no	ENST00000268296.8;ENST00000562522.2;ENST00000571644.1	23.535	12.362	8.732	0.891(8535)	0.762(535)	0.942(16376)	non tumor-specific	alt_5prime	yes
OLAH_LS003	chr10:15043986|15047126:+	OLAH	oleoyl-ACP hydrolase	protein coding gene	no	ENST00000378228.7;ENST00000378225.5;ENST00000378217.3	1.619	0.085	1.335	0.039(377)	0.036(25)	0.274(4761)	non tumor-specific	nAS	yes
UN_SLC16A5_LS0018	chr17:75091828|75093589:+	SLC16A5	solute carrier family 16 member 5	protein coding gene	no	.	1.817	0.233	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL121985.1_LS005	chr1:160676504|160678943:+	AL121985.1	-	lncRNA gene	no	ENST00000598917.6;ENST00000443928.6;ENST00000621431.3;ENST00000630436.2;ENST00000627996.2;ENST00000626085.2;ENST00000627799.2	0.796	0.249	0.752	0.056(540)	0.058(41)	0.068(1187)	non tumor-specific	nAS	yes
UN_GSE1_LS0170	chr16:85657604|85661151:+	GSE1	Gse1 coiled-coil protein	protein coding gene	no	.	9.589	1.220	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ANKRD19P_LS0004	chr9:92819379|92820773:+	ANKRD19P	ankyrin repeat domain 19, pseudogene	pseudogene	no	.	1.405	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
DDX1_LS023	chr2:15627145|15628445:+	DDX1	DEAD-box helicase 1	protein coding gene	no	ENST00000381341.6;ENST00000233084.7;ENST00000617198.4;ENST00000621973.1;ENST00000470674.1	254.413	152.705	134.366	0.998(9565)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AP005230.1_LS0031	chr18:2035147|2059969:-	AP005230.1	-	lncRNA gene	no	.	1.890	0.675	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
SAE1_LS031	chr19:47180303|47197233:+	SAE1	SUMO1 activating enzyme subunit 1	protein coding gene	no	ENST00000414294.6	0.066	0.994	0.892	0.513(4913)	0.463(325)	0.467(8114)	non tumor-specific	alt_3prime;exon_skip	yes
MAGED4_LS016	chrX:52189466|52189986:+	MAGED4	MAGE family member D4	protein coding gene	no	.;.	3.844	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IL33_LS0015	chr9:6248555|6250474:+	IL33	interleukin 33	protein coding gene	no	.	6.024	1.149	0.000	0.066(628)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
DDIAS_LS004	chr11:82901822|82914723:+	DDIAS	DNA damage induced apoptosis suppressor	protein coding gene	no	ENST00000532589.5	0.332	0.094	0.607	0.214(2053)	0.094(66)	0.042(737)	non tumor-specific	exon_skip	yes
GOLGA8CP_LS010	chr15:20568448|20568818:+	GOLGA8CP	golgin A8 family member C, pseudogene	pseudogene	no	ENST00000446144.2	3.383	0.000	0.646	0.001(14)	0(0)	0.002(32)	non tumor-specific	nAS	yes
UN_SLC9A3_LS0151	chr5:476713|477244:+	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	.	2.252	1.127	0.000	0.002(23)	0.026(18)	0(0)	non tumor-specific	nAS	no
KLHL3_LS018	chr5:137677469|137677545:-	KLHL3	kelch like family member 3	protein coding gene	no	ENST00000510529.1	0.204	0.069	0.745	0.074(713)	0.111(78)	0.11(1915)	non tumor-specific	alt_3prime	yes
APC2_LS018	chr19:1462177|1465155:+	APC2	solute carrier family 25 member 23	protein coding gene	no	ENST00000590469.5;ENST00000233607.6;ENST00000593146.1;ENST00000535453.5;ENST00000238483.5	10.986	5.090	8.619	0.102(977)	0.024(17)	0.325(5654)	non tumor-specific	alt_3prime	yes
UN_AIDA_LS0007	chr1:222693834|222694210:-	AIDA	axin interactor, dorsalization associated	protein coding gene	no	.	6.144	0.276	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC034102.6_LS004	chr12:56128665|56129241:-	AC034102.6	-	lncRNA gene	no	ENST00000550947.1	0.246	0.135	1.162	0.408(3907)	0.501(352)	0.577(10025)	non tumor-specific	nAS	yes
UN_CX3CR1_UP_LS0006	chr3:39292950|39380904:-	CX3CR1	C-X3-C motif chemokine receptor 1	protein coding gene	no	.	2.151	0.621	0.000	0.033(313)	0.03(21)	0(0)	non tumor-specific	nAS	no
INTS1_LS053	chr7:1498852|1498975:-	INTS1	integrator complex subunit 1	protein coding gene	yes	ENST00000404767.7	54.025	29.849	21.397	0.925(8866)	0.972(682)	0.977(16984)	non tumor-specific	alt_5prime	yes
UN_SLC35B2_LS0057	chr6:44255063|44255151:+	SLC35B2	solute carrier family 35 member B2	protein coding gene	no	.	1.900	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC124254.1_UP_LS0005	chr18:77404002|77411374:+	AC124254.1	-	lncRNA gene	no	.	2.413	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
HEXA_LS016	chr15:72347758|72348048:-	HEXA	hexosaminidase subunit alpha	protein coding gene	no	ENST00000268097.9;ENST00000567411.5;ENST00000566304.5;ENST00000568777.5;ENST00000567159.5;ENST00000566672.5	248.056	134.063	95.121	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
SLC35B1_LS005	chr17:49701510|49702858:-	SLC35B1	solute carrier family 35 member B1	protein coding gene	no	ENST00000649906.1;ENST00000240333.11;ENST00000502406.5;ENST00000508749.1;ENST00000507773.6;ENST00000649906.1;ENST00000240333.11;ENST00000502406.5;ENST00000508749.1;ENST00000507773.6;ENST00000649906.1;ENST00000240333.11;ENST00000502406.5;ENST00000508749.1;ENST00000507773.6	105.457	47.344	74.397	0.976(9347)	0.966(678)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
IPO9_LS015	chr1:201855934|201857096:+	IPO9	importin 9	protein coding gene	no	ENST00000361565.8	56.358	26.326	24.481	0.976(9351)	0.986(692)	0.978(16995)	non tumor-specific	exon_skip	yes
ZBTB44_LS017	chr11:130234273|130237010:-	ZBTB44	zinc finger and BTB domain containing 44	protein coding gene	no	ENST00000525842.5;ENST00000525842.5	1.578	1.398	6.325	0.789(7555)	0.789(554)	0.971(16873)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PITPNM3_LS027	chr17:6538082|6556385:-	PITPNM3	PITPNM family member 3	protein coding gene	no	ENST00000421306.7;ENST00000262483.12;ENST00000421306.7;ENST00000262483.12	0.895	1.107	2.736	0.367(3516)	0.638(448)	0.612(10637)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SIK1_UP_LS0004	chr21:43460801|43460908:-	SIK1	salt inducible kinase 1	protein coding gene	yes	.	2.860	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
RALGAPB_LS031	chr20:38558453|38562532:+	RALGAPB	Ral GTPase activating protein non-catalytic subunit beta	protein coding gene	no	ENST00000397042.7;ENST00000262879.10;ENST00000397040.5;ENST00000438490.2;ENST00000632792.1	29.753	18.984	16.058	0.978(9375)	0.993(697)	0.978(16994)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_FSIP1_LS0005	chr15:39588787|39588959:+	FSIP1	fibrous sheath interacting protein 1	protein coding gene	no	.	12.219	9.041	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ATP2B4_LS016	chr1:203714277|203720549:+	ATP2B4	ATPase plasma membrane Ca2+ transporting 4	protein coding gene	no	ENST00000357681.9;ENST00000367218.7;ENST00000341360.6	47.464	44.308	34.036	0.929(8896)	0.977(686)	0.975(16944)	non tumor-specific	exon_skip	yes
UN_RRP12_LS0043	chr10:97401368|97402163:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	.	0.899	0.178	0.000	0.012(114)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_PVT1_LS0044	chr8:127890998|127932053:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	3.415	0.207	0.000	0.013(129)	0.003(2)	0(0)	non tumor-specific	nAS	no
KLF6_LS016	chr10:3782214|3784913:-	KLF6	Kruppel like factor 6	protein coding gene	yes	ENST00000497571.5;ENST00000542957.1;ENST00000469435.1;ENST00000497571.5;ENST00000542957.1;ENST00000469435.1	32.281	31.818	80.866	0.981(9399)	0.996(699)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MATR3_LS080	chr5:139319501|139321898:+	MATR3	matrin 3	protein coding gene	no	ENST00000509990.5;ENST00000361059.7;ENST00000504203.5;ENST00000502929.5;ENST00000394800.6	26.959	27.082	158.779	0.826(7917)	0.825(579)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL355336.1_UP_LS0001	chr6:7052094|7176655:+	AL355336.1	-	lncRNA gene	no	.	1.636	0.699	0.000	0.035(338)	0.054(38)	0(0)	non tumor-specific	nAS	no
UN_LATS1_LS0037	chr6:149684178|149684341:+	LATS1	large tumor suppressor kinase 1	protein coding gene	yes	.	1.918	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
SCAP_LS038	chr3:47435137|47442872:-	SCAP	SREBF chaperone	protein coding gene	no	ENST00000428413.5;ENST00000320017.10;ENST00000441517.6;ENST00000265565.9;ENST00000648151.1;ENST00000416208.5;ENST00000416847.5;ENST00000495603.2;ENST00000420588.5;ENST00000485967.1;ENST00000448217.2	35.977	28.715	39.657	0.99(9486)	0.996(699)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
TRDN-AS1_LS007	chr6:123439777|123468816:+	TRDN-AS1	TRDN antisense RNA 1	lncRNA gene	no	ENST00000587106.6;ENST00000427828.5;ENST00000628939.2;ENST00000625415.1	0.341	0.179	1.685	0.008(79)	0.03(21)	0.121(2105)	non tumor-specific	nAS	yes
UN_LINC02453_UP_LS0003	chr12:98512922|98514084:-	LINC02453	long intergenic non-protein coding RNA 2453	lncRNA gene	no	.	0.984	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF220_LS0098	chr1:44650754|44650816:-	RNF220	ring finger protein 220	protein coding gene	no	.	6.107	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC006453.1_UP_LS0105	chr2:89937435|89948026:-	AC006453.1	-	pseudogene	no	.	36.613	8.014	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_VGLL4_LS0038	chr3:11564938|11601835:+	VGLL4	vestigial like family member 4	protein coding gene	no	.	0.766	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SKIL_LS006	chr3:170358645|170359699:+	SKIL	SKI like proto-oncogene	protein coding gene	yes	ENST00000490989.1	0.173	0.098	0.795	0.577(5530)	0.61(428)	0.325(5651)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL031847.2_LS0022	chr1:6186838|6192930:-	AL031847.2	-	protein coding gene	no	.	520.283	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC00467_LS0010	chr1:211395001|211396767:+	LINC00467	long intergenic non-protein coding RNA 467	lncRNA gene	no	.	3.003	0.485	0.000	0.107(1029)	0.078(55)	0(0)	non tumor-specific	nAS	no
UN_HAPLN2_UP_LS0006	chr1:156594094|156596707:+	HAPLN2	hyaluronan and proteoglycan link protein 2	protein coding gene	no	.	1.256	0.190	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ZPLD1_LS015	chr3:102456374|102457781:+	ZPLD1	zona pellucida like domain containing 1	protein coding gene	no	ENST00000491959.5;ENST00000306176.5;ENST00000466937.1	6.527	0.516	0.669	0.037(359)	0.04(28)	0.05(869)	non tumor-specific	exon_skip	yes
UN_COQ8A_LS0048	chr1:226982763|226983552:+	COQ8A	coenzyme Q8A	protein coding gene	no	.	5.810	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SCNN1A_LS001	chr12:6348253|6348727:-	SCNN1A	sodium channel epithelial 1 subunit alpha	protein coding gene	no	ENST00000360168.7;ENST00000540037.5;ENST00000228916.6;ENST00000338748.9;ENST00000396966.6;ENST00000543768.1;ENST00000539953.1	129.836	135.015	8.030	0.821(7866)	0.972(682)	0.782(13587)	non tumor-specific	alt_5prime	yes
UN_RIOK1_LS0016	chr6:7404555|7404896:+	RIOK1	RIO kinase 1	protein coding gene	no	.	6.033	0.476	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_GPX3_LS0048	chr5:151028192|151028391:-	GPX3	glutathione peroxidase 3	protein coding gene	yes	.	35.352	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NDEL1_LS010	chr17:8436045|8443927:+	NDEL1	nudE neurodevelopment protein 1 like 1	protein coding gene	no	ENST00000584866.1;ENST00000582490.5;ENST00000583066.5	0.129	0.050	1.374	0.498(4774)	0.379(266)	0.668(11615)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINS1_LS013	chr15:100580736|100602121:-	LINS1	lines homolog 1	protein coding gene	no	ENST00000560941.5	0.014	0.023	0.610	0.311(2976)	0.38(267)	0.012(214)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
POLA1_LS031	chrX:24809930|24810708:+	POLA1	DNA polymerase alpha 1, catalytic subunit	protein coding gene	no	ENST00000379068.7;ENST00000611764.1;ENST00000379059.7;ENST00000480125.1	12.905	5.221	5.869	0.913(8750)	0.934(656)	0.948(16473)	non tumor-specific	nAS	yes
UN_AC091078.1_LS0003	chr15:93373585|93483091:+	AC091078.1	-	lncRNA gene	no	.	2.569	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
XYLB_LS011	chr3:38368257|38370056:+	XYLB	xylulokinase	protein coding gene	no	ENST00000207870.7;ENST00000650590.1;ENST00000424034.5;ENST00000649234.1;ENST00000487569.1	5.522	4.171	1.982	0.842(8065)	0.853(599)	0.776(13493)	non tumor-specific	nAS	yes
RASSF8-AS1_LS012	chr12:25956764|25958932:-	RASSF8-AS1	RASSF8 antisense RNA 1	lncRNA gene	no	ENST00000545226.5;ENST00000537801.1	0.292	0.406	1.047	0.467(4476)	0.624(438)	0.467(8117)	non tumor-specific	nAS	yes
EPC1_LS010	chr10:32273281|32273922:-	EPC1	enhancer of polycomb homolog 1	protein coding gene	no	ENST00000479380.1	0.341	0.450	2.406	0.662(6339)	0.744(522)	0.853(14832)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KRT83_LS008	chr12:52319364|52320952:-	KRT83	keratin 83	protein coding gene	no	ENST00000293670.3	1.990	49.143	1.148	0.073(702)	0.113(79)	0.133(2318)	non tumor-specific	nAS	yes
RNF123_LS013	chr3:49699105|49699468:+	RNF123	ring finger protein 123	protein coding gene	no	ENST00000327697.10;ENST00000432042.5;ENST00000457726.5;ENST00000486102.5;ENST00000487805.6	21.009	16.727	15.660	0.938(8986)	0.977(686)	0.977(16982)	non tumor-specific	alt_3prime	yes
KANK3_LS012	chr19:8334419|8337795:-	KANK3	KN motif and ankyrin repeat domains 3	protein coding gene	no	ENST00000595639.1	0.475	0.207	0.699	0.08(768)	0.184(129)	0.07(1209)	non tumor-specific	exon_skip	yes
TTBK2_LS001	chr15:42746257|42751974:-	TTBK2	tau tubulin kinase 2	protein coding gene	no	ENST00000267890.10;ENST00000622375.4	4.873	3.736	6.390	0.789(7556)	0.889(624)	0.947(16455)	non tumor-specific	nAS	yes
UN_CCDC88C_LS0016	chr14:91278197|91279238:-	CCDC88C	coiled-coil domain containing 88C	protein coding gene	no	.	2.982	0.286	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
FOXR1_LS002	chr11:118978856|118978957:+	FOXR1	forkhead box R1	protein coding gene	no	ENST00000317011.7;ENST00000531539.5;ENST00000533282.1	9.339	0.000	0.801	0.027(259)	0(0)	0.03(529)	non tumor-specific	alt_3prime	yes
UN_AC019193.3_UP_LS0005	chr4:183092290|183098962:-	AC019193.3	-	lncRNA gene	no	.	1.116	0.943	0.000	0.002(15)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_EMC3_LS0035	chr3:9971622|9973628:-	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	.	2.860	0.781	0.000	0.07(670)	0.118(83)	0(0)	non tumor-specific	exon_skip	no
GAK_LS036	chr4:882819|883315:-	GAK	cyclin G associated kinase	protein coding gene	no	ENST00000314167.8;ENST00000511163.5;ENST00000504947.1	78.770	55.109	47.997	0.991(9497)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime	yes
UN_ZNF528-AS1_LS0007	chr19:52390666|52393322:-	ZNF528-AS1	ZNF528 antisense RNA 1	lncRNA gene	no	.	9.525	0.055	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RCC1_LS0023	chr1:28508905|28509337:+	RCC1	regulator of chromosome condensation 1	protein coding gene	no	.	7.764	0.411	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
PRDM11_LS011	chr11:45209295|45212469:+	PRDM11	PR/SET domain 11	protein coding gene	yes	ENST00000534751.2	5.511	4.090	6.210	0.795(7620)	0.887(623)	0.943(16395)	non tumor-specific	exon_skip	yes
BEND6_LS006	chr6:56992555|57014462:+	BEND6	BEN domain containing 6	protein coding gene	no	ENST00000370745.1;ENST00000370745.1	0.394	0.412	1.506	0.191(1834)	0.07(49)	0.31(5396)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC067968.1_LS0009	chr19:44051801|44052094:+	AC067968.1	-	protein coding gene	no	.	0.347	0.042	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TMC2_LS0016	chr20:2624531|2635926:+	TMC2	transmembrane channel like 2	protein coding gene	no	.	2.252	0.908	0.000	0.005(45)	0.124(87)	0(0)	non tumor-specific	exon_skip	no
ZNF646_LS001	chr16:31074631|31076246:+	ZNF646	zinc finger protein 646	protein coding gene	no	ENST00000300850.5	1.958	1.319	1.508	0.74(7086)	0.818(574)	0.744(12929)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_HOXA9_UP_LS0001	chr7:27179776|27180811:-	HOXA9	homeobox A9	protein coding gene	yes	.	2.875	0.284	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SUGT1P4-STRA6LP_LS007	chr9:97279473|97281516:+	SUGT1P4-STRA6LP	SUGT1P4-STRA6LP readthrough	lncRNA gene	no	ENST00000527128.5;ENST00000375204.2	1.604	0.915	4.855	0.344(3297)	0.44(309)	0.919(15968)	non tumor-specific	exon_skip	yes
RECQL5_LS041	chr17:75665172|75666428:-	RECQL5	RecQ like helicase 5	protein coding gene	no	ENST00000317905.9;ENST00000578201.5;ENST00000420326.6;ENST00000340830.9;ENST00000584999.1	12.099	5.985	13.472	0.975(9341)	0.987(693)	0.977(16974)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BX890604.2_LS0118	chrX:3854927|3863502:-	BX890604.2	-	lncRNA gene	no	.	0.885	0.015	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ARHGEF26-AS1_LS0020	chr3:154060062|154108669:-	ARHGEF26-AS1	ARHGEF26 antisense RNA 1	lncRNA gene	no	.	1.674	0.749	0.000	0.011(102)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_PLBD2_LS0387	chr12:113390867|113390897:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	14.627	0.369	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
RGS3_LS048	chr9:113581005|113582072:+	RGS3	regulator of G protein signaling 3	protein coding gene	no	ENST00000374134.7;ENST00000374134.7	0.434	0.437	1.487	0.549(5259)	0.668(469)	0.435(7564)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
HIPK1_LS004	chr1:113930859|113932201:+	HIPK1	homeodomain interacting protein kinase 1	protein coding gene	no	ENST00000503968.1	0.087	0.084	1.068	0.002(17)	0.006(4)	0.002(39)	non tumor-specific	nAS	yes
COQ9_LS004	chr16:57447578|57451040:+	COQ9	coenzyme Q9	protein coding gene	no	ENST00000566388.5;ENST00000262507.10;ENST00000565964.5;ENST00000562734.5;ENST00000568790.5;ENST00000564115.5;ENST00000567072.5;ENST00000567933.5;ENST00000562426.5;ENST00000563166.1;ENST00000566388.5;ENST00000262507.10;ENST00000565964.5;ENST00000562734.5;ENST00000568790.5;ENST00000564115.5;ENST00000567072.5;ENST00000567933.5;ENST00000562426.5;ENST00000563166.1	22.724	20.030	27.854	0.985(9435)	0.991(696)	0.978(17008)	non tumor-specific	alt_3prime;alt_5prime	yes
NBPF10_LS001	chr1:146066561|146067180:-	NBPF10	NBPF member 10	protein coding gene	no	ENST00000583866.8;ENST00000617010.2	19.562	12.552	0.868	0.923(8846)	0.979(687)	0.414(7199)	non tumor-specific	nAS	yes
LINC00868_LS004	chr17:76858355|76861476:+	LINC00868	long intergenic non-protein coding RNA 868	lncRNA gene	no	ENST00000589708.1	0.108	0.000	0.677	0.005(48)	0(0)	0.007(130)	non tumor-specific	nAS	yes
COMMD10_LS012	chr5:116303683|116306800:+	COMMD10	COMM domain containing 10	protein coding gene	no	ENST00000508250.5	0.581	0.421	0.716	0.092(883)	0.144(101)	0.222(3863)	non tumor-specific	intron_retention	yes
SSUH2_LS025	chr3:8635857|8639948:-	SSUH2	ssu-2 homolog	protein coding gene	no	ENST00000455157.6;ENST00000317371.8;ENST00000495366.5;ENST00000483845.1	0.600	0.173	0.731	0.034(324)	0.02(14)	0.088(1531)	non tumor-specific	exon_skip;mutex_exons	yes
EIF3L_LS026	chr22:37878171|37886765:+	EIF3L	eukaryotic translation initiation factor 3 subunit L	protein coding gene	no	ENST00000412331.6;ENST00000624234.3;ENST00000381683.10;ENST00000477256.5;ENST00000406934.5;ENST00000482600.5;ENST00000450376.1	1195.663	726.941	646.865	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_STIP1_UP_LS0010	chr11:64169998|64170553:+	STIP1	stress induced phosphoprotein 1	protein coding gene	no	.	3.231	0.319	0.000	0.012(115)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DLEU7_LS0028	chr13:50757965|50777737:+	DLEU7	deleted in lymphocytic leukemia 7	protein coding gene	no	.	1.685	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ADGRV1_LS015	chr5:90642762|90642856:+	ADGRV1	adhesion G protein-coupled receptor V1	protein coding gene	no	ENST00000645211.1;ENST00000405460.8;ENST00000504142.2;ENST00000640403.1	5.649	0.405	1.274	0.062(594)	0.124(87)	0.156(2710)	non tumor-specific	nAS	yes
ANK1_LS023	chr8:41672529|41684544:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000518061.1;ENST00000518061.1	1.156	0.105	0.822	0.054(513)	0.009(6)	0.061(1064)	non tumor-specific	alt_3prime;exon_skip	yes
PRKDC_LS026	chr8:47826861|47828168:-	PRKDC	protein kinase, DNA-activated, catalytic subunit	protein coding gene	no	ENST00000314191.6;ENST00000338368.7	31.512	12.975	17.748	0.946(9068)	0.97(681)	0.973(16912)	non tumor-specific	alt_5prime;exon_skip	yes
DAB1-AS1_LS019	chr1:57878443|57880486:+	DAB1-AS1	DAB1 antisense RNA 1	lncRNA gene	no	ENST00000591523.5;ENST00000457412.6;ENST00000586465.5	11.946	0.000	0.814	0(3)	0(0)	0.003(48)	non tumor-specific	nAS	yes
CBR3-AS1_LS008	chr21:36133761|36137094:-	CBR3-AS1	CBR3 antisense RNA 1	lncRNA gene	no	ENST00000608632.5;ENST00000609192.5;ENST00000608641.5	0.054	0.054	0.739	0.12(1154)	0.179(126)	0.118(2057)	non tumor-specific	nAS	yes
UN_MFSD5_LS0031	chr12:53253462|53253562:-	MFSD5	major facilitator superfamily domain containing 5	protein coding gene	no	.	1.212	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
ELF5_LS011	chr11:34505753|34513677:-	ELF5	E74 like ETS transcription factor 5	protein coding gene	no	ENST00000257832.6;ENST00000429939.6;ENST00000532417.1	3.718	4.807	3.979	0.3(2870)	0.546(383)	0.181(3141)	non tumor-specific	exon_skip	yes
PRTG_LS019	chr15:55683931|55740382:-	PRTG	protogenin	protein coding gene	no	ENST00000389286.8	2.933	1.292	0.974	0.137(1309)	0.289(203)	0.379(6584)	non tumor-specific	exon_skip	yes
RASGEF1C_LS007	chr5:180115284|180118609:-	RASGEF1C	RasGEF domain family member 1C	protein coding gene	no	ENST00000615330.4;ENST00000520209.5	0.502	0.037	0.901	0.017(160)	0.003(2)	0.05(877)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FASTKD1_LS0008	chr2:169538122|169540051:-	FASTKD1	FAST kinase domains 1	protein coding gene	no	.	1.938	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
DDX5_LS016	chr17:64502223|64502439:-	DDX5	DEAD-box helicase 5	protein coding gene	no	ENST00000540698.6;ENST00000581693.5;ENST00000581230.5;ENST00000225792.9;ENST00000450599.6;ENST00000578804.5;ENST00000578491.1	269.651	275.497	735.221	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
UN_BTN3A2_LS0021	chr6:26375796|26377687:+	BTN3A2	butyrophilin subfamily 3 member A2	protein coding gene	no	.	6.654	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_ORM2_UP_LS0004	chr9:114327049|114327217:+	ORM2	orosomucoid 2	protein coding gene	no	.	88.917	70.012	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TRAPPC12_LS0071	chr2:3478933|3482414:+	TRAPPC12	trafficking protein particle complex 12	protein coding gene	no	.	2.603	0.680	0.000	0.02(190)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
VAMP4_LS004	chr1:171702084|171706367:-	VAMP4	vesicle associated membrane protein 4	protein coding gene	no	.;.	0.918	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LPAR1_LS005	chr9:110972220|110973481:-	LPAR1	lysophosphatidic acid receptor 1	protein coding gene	no	ENST00000374431.7;ENST00000374430.6;ENST00000541779.5;ENST00000441240.1	10.386	12.933	23.060	0.831(7960)	0.937(658)	0.946(16447)	non tumor-specific	exon_skip	yes
UN_THUMPD1_LS0005	chr16:20729256|20729454:+	THUMPD1	THUMP domain containing 1	protein coding gene	no	.	1.609	0.590	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_COPRS_LS0007	chr17:31856865|31858480:-	COPRS	coordinator of PRMT5 and differentiation stimulator	protein coding gene	no	.	3.242	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime	no
MLN_LS007	chr6:33801170|33803953:-	MLN	myoregulin	protein coding gene	no	ENST00000430124.6;ENST00000266003.9;ENST00000507738.1	1.641	0.537	0.847	0.027(261)	0.021(15)	0.009(162)	non tumor-specific	exon_skip	yes
TRPV5_LS006	chr7:142915383|142915482:-	TRPV5	transient receptor potential cation channel subfamily V member 5	protein coding gene	no	ENST00000265310.5;ENST00000439304.5	0.285	1.870	1.028	0.001(7)	0.101(71)	0.158(2741)	non tumor-specific	nAS	yes
TFCP2_LS016	chr12:51116420|51117671:-	TFCP2	transcription factor CP2	protein coding gene	yes	ENST00000257915.9;ENST00000549867.5;ENST00000548115.5;ENST00000548108.1	45.665	24.691	22.643	0.983(9417)	0.994(698)	0.978(17007)	non tumor-specific	exon_skip	yes
DDX58_LS017	chr9:32493942|32500805:-	DDX58	DExD/H-box helicase 58	protein coding gene	yes	ENST00000379868.5;ENST00000379883.2	12.321	7.930	5.486	0.881(8438)	0.96(674)	0.952(16544)	non tumor-specific	exon_skip	yes
UN_IGHG1_LS0058	chr14:105741777|105741907:+	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	82.841	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PLCB2_LS026	chr15:40293025|40293560:-	PLCB2	phospholipase C beta 2	protein coding gene	no	ENST00000260402.7;ENST00000558588.5;ENST00000557821.5;ENST00000456256.6;ENST00000561378.1	16.741	4.385	10.792	0.878(8415)	0.907(637)	0.935(16246)	non tumor-specific	nAS	yes
STIM1_LS018	chr11:4055637|4059281:+	STIM1	stromal interaction molecule 1	protein coding gene	no	ENST00000525403.5;ENST00000300737.8;ENST00000616714.4;ENST00000527651.5;ENST00000532610.5;ENST00000532919.5;ENST00000528656.5;ENST00000526771.5;ENST00000527484.5;ENST00000533445.1	34.453	28.308	52.059	0.975(9346)	0.994(698)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_C7orf50_LS0036	chr7:1021591|1127257:-	C7orf50	chromosome 7 open reading frame 50	protein coding gene	no	.	1.653	0.276	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
NUP188_LS040	chr9:128999805|129001529:+	NUP188	nucleoporin 188	protein coding gene	no	ENST00000372577.2;ENST00000477069.5;ENST00000487952.1	79.730	32.049	36.837	0.993(9511)	0.997(700)	0.979(17014)	non tumor-specific	nAS	yes
TGM1_LS005	chr14:24255517|24255989:-	TGM1	transglutaminase 1	protein coding gene	no	ENST00000206765.10;ENST00000544573.5;ENST00000559136.1	19.367	87.859	3.614	0.512(4909)	0.679(477)	0.885(15390)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RTKN2_UP_LS0009	chr10:62354647|62371933:-	RTKN2	rhotekin 2	protein coding gene	no	.	1.080	1.212	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
WDR59_LS031	chr16:74938266|74948519:-	WDR59	WD repeat domain 59	protein coding gene	no	ENST00000568462.5;ENST00000568323.5	0.746	0.428	0.881	0.639(6124)	0.648(455)	0.481(8363)	non tumor-specific	exon_skip	yes
GTF2I_LS017	chr7:74711109|74716894:+	GTF2I	general transcription factor IIi	protein coding gene	no	ENST00000614986.4;ENST00000620879.4;ENST00000443166.5	75.946	55.382	51.619	0.991(9493)	0.993(697)	0.978(17007)	non tumor-specific	alt_3prime;exon_skip	yes
DEC1_LS012	chr9:115290937|115291782:+	DEC1	deleted in esophageal cancer 1	protein coding gene	no	ENST00000647970.1;ENST00000477580.5	0.941	0.103	0.741	0.02(194)	0.003(2)	0.075(1304)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SLC45A4_LS0062	chr8:141237858|141254567:+	SLC45A4	solute carrier family 45 member 4	protein coding gene	no	.	1.952	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZBTB20-AS5_LS001	chr3:114445649|114453577:+	ZBTB20-AS5	ZBTB20 antisense RNA 5	lncRNA gene	no	ENST00000628886.1	0.720	0.000	1.854	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_WDR19_LS0006	chr4:39216214|39217987:+	WDR19	WD repeat domain 19	protein coding gene	no	.	1.460	0.006	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
MLXIPL_LS020	chr7:73599695|73616071:-	MLXIPL	MLX interacting protein like	protein coding gene	no	ENST00000453275.1	0.103	0.106	1.405	0.191(1832)	0.207(145)	0.381(6619)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNA5SP368_UP_LS0005	chr12:101744029|101748550:+	RNA5SP368	RNA, 5S ribosomal pseudogene 368	no	no	.	2.650	0.024	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
SEC31B_LS021	chr10:100498207|100498705:-	SEC31B	SEC31 homolog B, COPII coat complex component	protein coding gene	no	ENST00000370345.7;ENST00000479697.5;ENST00000462434.5;ENST00000482456.6;ENST00000484848.5;ENST00000494350.1	1.357	0.318	8.568	0.211(2021)	0.17(119)	0.968(16830)	non tumor-specific	exon_skip	yes
TRAM1_LS010	chr8:70598011|70598134:-	TRAM1	translocation associated membrane protein 1	protein coding gene	no	ENST00000521425.5;ENST00000262213.6;ENST00000520700.1;ENST00000518678.1	273.772	190.793	73.366	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AC022710.1_LS001	chr15:100126412|100128270:+	AC022710.1	-	lncRNA gene	no	ENST00000560128.1	0.127	0.060	0.936	0.011(105)	0.011(8)	0.02(348)	non tumor-specific	nAS	yes
TSPAN7_LS014	chrX:38671450|38674221:+	TSPAN7	tetraspanin 7	protein coding gene	no	ENST00000378482.6;ENST00000471410.5;ENST00000480976.5;ENST00000475216.5;ENST00000286824.6;ENST00000488893.5;ENST00000419600.3	105.723	145.615	88.279	0.956(9162)	0.997(700)	0.961(16699)	non tumor-specific	nAS	yes
GCHFR_LS002	chr15:40764216|40765860:+	GCHFR	GTP cyclohydrolase I feedback regulator	protein coding gene	no	ENST00000559445.1	3.620	2.809	2.052	0.789(7556)	0.84(590)	0.77(13391)	non tumor-specific	alt_3prime;exon_skip	yes
LINC02345_LS003	chr15:37993486|38039996:+	LINC02345	long intergenic non-protein coding RNA 2345	lncRNA gene	no	ENST00000558081.2	1.150	1.266	0.781	0.016(154)	0.074(52)	0.013(234)	non tumor-specific	nAS	yes
CFB_LS005	chr6:31947192|31947348:+	CFB	complement factor B	protein coding gene	no	ENST00000425368.6;ENST00000460718.5;ENST00000452035.6	170.955	189.043	13.122	0.935(8960)	0.994(698)	0.933(16210)	non tumor-specific	intron_retention	yes
UN_AC087857.1_LS0019	chr3:6067456|6123976:+	AC087857.1	-	lncRNA gene	no	.	3.200	0.200	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
AMPD1_LS008	chr1:114678041|114678333:-	AMPD1	adenosine monophosphate deaminase 1	protein coding gene	no	ENST00000637080.1;ENST00000520113.6;ENST00000369538.3;ENST00000639077.1	2.651	2.298	1.370	0.093(891)	0.318(223)	0.318(5535)	non tumor-specific	exon_skip	yes
UN_AC003006.1_LS0039	chr19:57696997|57697132:-	AC003006.1	-	protein coding gene	no	.	2.182	0.056	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MAGI3_LS012	chr1:113618606|113619736:+	MAGI3	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein coding gene	no	ENST00000369617.8	0.168	0.065	1.103	0.189(1807)	0.305(214)	0.534(9285)	non tumor-specific	exon_skip	yes
PPM1F_LS002	chr22:21925028|21925569:-	PPM1F	protein phosphatase, Mg2+/Mn2+ dependent 1F	protein coding gene	no	ENST00000484588.1	0.619	0.234	0.753	0.319(3057)	0.172(121)	0.241(4181)	non tumor-specific	intron_retention	yes
UN_LINC01612_UP_LS0008	chr4:170172872|170207005:+	LINC01612	long intergenic non-protein coding RNA 1612	lncRNA gene	no	.	2.736	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PHF10_LS006	chr6:169712539|169714733:-	PHF10	PHD finger protein 10	protein coding gene	no	ENST00000366780.8;ENST00000339209.8;ENST00000621772.4;ENST00000612128.1	100.291	75.181	75.479	0.995(9537)	0.997(700)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RN7SL667P_UP_LS0005	chrX:153439077|153446009:-	RN7SL667P	RNA, 7SL, cytoplasmic 667, pseudogene	small non-coding RNA gene	no	.	2.762	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
C2orf42_LS024	chr2:70182935|70190973:-	C2orf42	chromosome 2 open reading frame 42	protein coding gene	no	ENST00000264434.6;ENST00000264434.6	0.082	0.156	1.437	0.693(6638)	0.728(511)	0.716(12454)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RN7SL404P_UP_LS0007	chr17:64898459|64944168:-	RN7SL404P	RNA, 7SL, cytoplasmic 404, pseudogene	small non-coding RNA gene	no	.	0.633	0.065	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATAD2B_LS021	chr2:23823569|23827798:-	ATAD2B	ATPase family AAA domain containing 2B	protein coding gene	no	ENST00000474583.5	2.173	1.023	1.499	0.05(479)	0.093(65)	0.718(12486)	non tumor-specific	exon_skip	yes
CKLF_LS008	chr16:66563217|66565886:+	CKLF	Kruppel like factor 5	protein coding gene	no	ENST00000264001.8;ENST00000351137.8;ENST00000563092.1	77.244	25.991	31.615	0.927(8885)	0.946(664)	0.979(17017)	non tumor-specific	exon_skip	yes
STAP2_LS012	chr19:4325308|4326942:-	STAP2	signal transducing adaptor family member 2	protein coding gene	no	ENST00000596242.5	0.068	0.073	1.959	0.845(8096)	0.852(598)	0.548(9529)	non tumor-specific	exon_skip	yes
UN_SLX4_LS0035	chr16:3606696|3608430:-	SLX4	SLX4 structure-specific endonuclease subunit	protein coding gene	yes	.	0.782	0.013	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DMGDH_LS0098	chr5:79121352|79123346:-	DMGDH	dimethylglycine dehydrogenase	protein coding gene	no	.	2.114	0.525	0.000	0.021(205)	0.07(49)	0(0)	non tumor-specific	nAS	no
SLC9A9_LS007	chr3:143495448|143552362:-	SLC9A9	solute carrier family 9 member A9	protein coding gene	no	ENST00000316549.10	6.996	6.108	5.957	0.694(6649)	0.932(654)	0.93(16160)	non tumor-specific	nAS	yes
TRIM68_LS001	chr11:4600826|4601027:-	TRIM68	tripartite motif containing 68	protein coding gene	no	ENST00000300747.9;ENST00000531101.5;ENST00000526337.5;ENST00000531717.1	17.260	13.187	12.350	0.949(9091)	0.983(690)	0.973(16915)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AP001453.2_LS0008	chr11:64247425|64247953:+	AP001453.2	-	lncRNA gene	no	.	3.578	0.013	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
RDX_LS022	chr11:110258189|110263332:-	RDX	radixin	protein coding gene	no	ENST00000642511.1	1.389	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	exon_skip	yes
UN_DHRSX_LS0004	chrX:2221251|2243023:-	DHRSX	dehydrogenase/reductase X-linked	protein coding gene	no	.	6.274	0.573	0.000	0.019(185)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AHCYP7_UP_LS0003	chr15:50336580|50369985:+	AHCYP7	adenosylhomocysteinase pseudogene 7	pseudogene	no	.	4.188	0.285	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
RANBP1_LS006	chr22:20117912|20119013:+	RANBP1	RAN binding protein 1	protein coding gene	no	ENST00000421656.5;ENST00000421656.5	0.063	0.019	0.778	0.847(8119)	0.819(575)	0.222(3851)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RAN_LS0014	chr12:130875782|130875891:+	RAN	RAN, member RAS oncogene family	protein coding gene	no	.	69.008	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_3prime	no
GLYCTK_LS017	chr3:52292569|52293307:+	GLYCTK	glycerate kinase	protein coding gene	no	.;.	3.690	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CABIN1_LS0174	chr22:24177817|24178057:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	9.860	2.105	0.000	0.04(379)	0.038(27)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC005009.1_LS001	chr7:86775271|86775945:-	AC005009.1	-	lncRNA gene	no	ENST00000423979.1	0.354	0.154	1.474	0.298(2852)	0.325(228)	0.57(9910)	non tumor-specific	nAS	yes
UN_CASTOR2_UP_LS0005	chr7:74897835|74900887:+	CASTOR2	cytosolic arginine sensor for mTORC1 subunit 2	protein coding gene	no	.	2.172	0.575	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAPKAP1_LS0024	chr9:125438729|125438880:+	MAPKAP1	MAPK associated protein 1	protein coding gene	no	.	1.116	0.302	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDH1_LS014	chr16:68812263|68815515:+	CDH1	fizzy and cell division cycle 20 related 1	protein coding gene	yes	ENST00000422392.6	1.318	1.212	0.591	0.293(2806)	0.348(244)	0.011(192)	non tumor-specific	exon_skip	yes
UN_AC069154.1_UP_LS0003	chr2:119685754|119688910:+	AC069154.1	-	pseudogene	no	.	5.406	0.239	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
COL4A2_LS048	chr13:110503993|110504148:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	ENST00000360467.6;ENST00000650225.1;ENST00000650322.1;ENST00000649396.1;ENST00000649951.1	305.184	179.377	130.265	0.961(9211)	0.99(695)	0.962(16718)	non tumor-specific	nAS	yes
MTG1_LS004	chr10:133395777|133396163:+	MTG1	mitochondrial ribosome associated GTPase 1	protein coding gene	no	ENST00000477902.6;ENST00000317502.10;ENST00000432508.3;ENST00000460848.5;ENST00000495014.5;ENST00000498790.5;ENST00000473735.1	50.440	28.315	32.750	0.996(9547)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
UN_AL020996.2_LS0088	chr1:25817762|25819712:-	AL020996.2	-	protein coding gene	no	.	1.656	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CT45A2_UP_LS0005	chrX:135833539|135893328:-	CT45A2	cancer/testis antigen family 45 member A2	protein coding gene	no	.	1.611	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAN2C1_LS0050	chr15:75366083|75366522:-	MAN2C1	mannosidase alpha class 2C member 1	protein coding gene	no	.	1.426	0.101	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ERICH1_LS0054	chr8:651433|651948:+	ERICH1	glutamate rich 1	protein coding gene	no	.	4.455	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPPL3_LS0029	chr12:120782767|120791469:-	SPPL3	signal peptide peptidase like 3	protein coding gene	no	.	12.170	0.131	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_TRAF3IP2-AS1_LS0036	chr6:111546073|111574621:+	TRAF3IP2-AS1	TRAF3IP2 antisense RNA 1	lncRNA gene	no	.	0.744	0.294	0.000	0.02(195)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FP671120.3_UP_LS0506	chr21:8236236|8259823:-	FP671120.3	-	lncRNA gene	no	.	7.947	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC007389.5_LS002	chr2:65624478|65628163:+	AC007389.5	-	lncRNA gene	no	ENST00000629214.1	1.170	0.283	0.822	0.022(209)	0.01(7)	0.266(4625)	non tumor-specific	nAS	yes
SLC37A1_LS009	chr21:42513924|42518277:+	SLC37A1	solute carrier family 37 member 1	protein coding gene	no	.;.	3.409	2.261	0.000	0.219(2101)	0.241(169)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
NEK8_LS001	chr17:28725972|28733983:+	NEK8	NIMA related kinase 8	protein coding gene	no	ENST00000579671.5	0.048	0.033	0.761	0.412(3947)	0.442(310)	0.103(1787)	non tumor-specific	alt_5prime	yes
UN_RABL2A_UP_LS0006	chr2:113584136|113595369:+	RABL2A	RAB, member of RAS oncogene family like 2A	protein coding gene	no	.	1.272	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL133373.1_UP_LS0001	chr14:91421123|91424574:+	AL133373.1	-	pseudogene	no	.	1.404	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_XRRA1_LS0080	chr11:74933745|74934392:+	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	.	2.107	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UGGT1_LS0040	chr2:128185447|128194236:+	UGGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein coding gene	no	.	1.730	0.314	0.000	0.008(78)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_KIAA0087_UP_LS0016	chr7:26617531|26617613:-	KIAA0087	KIAA0087 lncRNA	lncRNA gene	no	.	2.983	0.195	0.000	0.024(226)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_WSB1_LS0011	chr17:27308667|27309100:+	WSB1	WD repeat and SOCS box containing 1	protein coding gene	no	.	16.569	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
GLIS3_LS011	chr9:3937189|4081228:-	GLIS3	GLIS family zinc finger 3	protein coding gene	no	ENST00000464391.1	0.546	0.046	0.877	0.008(78)	0.01(7)	0.009(158)	non tumor-specific	nAS	yes
UN_ORC4_LS0007	chr2:147958866|147960242:-	ORC4	origin recognition complex subunit 4	protein coding gene	no	.	2.354	0.668	0.000	0.022(208)	0.033(23)	0(0)	non tumor-specific	exon_skip	no
TUBBP5_LS001	chr9:138150308|138174046:+	TUBBP5	tubulin beta pseudogene 5	pseudogene	no	ENST00000503395.5	1.506	0.798	0.992	0.441(4228)	0.544(382)	0.209(3639)	non tumor-specific	nAS	yes
UN_HCN3_LS0021	chr1:155287956|155288630:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	.	1.200	0.055	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_NFE2L1_LS0271	chr17:48060555|48060636:-	NFE2L1	nuclear factor, erythroid 2 like 1	protein coding gene	no	.	1.943	0.481	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	nAS	no
TMEM18_LS010	chr2:675630|676574:-	TMEM18	transmembrane protein 18	protein coding gene	no	ENST00000405941.3;ENST00000405941.3	0.139	0.091	0.830	0.685(6564)	0.64(449)	0.221(3834)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MROH6_LS0044	chr8:143570994|143571705:-	MROH6	maestro heat like repeat family member 6	protein coding gene	no	.	5.282	0.130	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
BMS1P1_LS005	chr10:46794915|46795805:+	BMS1P1	BMS1 pseudogene 1	pseudogene	no	ENST00000374336.5	0.640	0.060	0.707	0.001(13)	0.001(1)	0.013(227)	non tumor-specific	nAS	yes
UN_AKR1C2_LS0027	chr10:5003547|5003752:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.	6.534	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_DCN_UP_LS0033	chr12:91397733|91398651:-	DCN	decorin	protein coding gene	yes	.	5.562	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01701_UP_LS0030	chr1:189754898|189775465:+	LINC01701	long intergenic non-protein coding RNA 1701	lncRNA gene	no	.	3.702	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_Z98885.2_UP_LS0004	chr22:49860291|49904179:-	Z98885.2	-	lncRNA gene	no	.	1.398	1.183	0.000	0.01(97)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_BCAS1_LS0028	chr20:53985499|53986092:-	BCAS1	brain enriched myelin associated protein 1	protein coding gene	no	.	1.986	1.116	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC093627.4_LS0006	chr7:152547|152668:+	AC093627.4	-	lncRNA gene	no	.	1.522	0.097	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_YTHDC1_LS0004	chr4:68316448|68318307:-	YTHDC1	YTH domain containing 1	protein coding gene	no	.	1.713	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
NUP50-DT_LS001	chr22:45134797|45138824:-	NUP50-DT	NUP50 divergent transcript	lncRNA gene	no	ENST00000426282.6;ENST00000609284.1	10.228	5.458	13.242	0.96(9199)	0.96(674)	0.978(16999)	non tumor-specific	nAS	yes
UN_KLK11_LS0043	chr19:51026666|51027457:-	KLK11	kallikrein related peptidase 11	protein coding gene	no	.	10.961	1.054	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ETFB_LS0009	chr19:51345339|51346990:+	ETFB	electron transfer flavoprotein subunit beta	protein coding gene	no	.	5.152	0.289	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
IFI6_LS005	chr1:27668535|27669221:-	IFI6	interferon alpha inducible protein 6	protein coding gene	no	ENST00000339145.8	11.750	7.146	1.760	0.987(9456)	0.994(698)	0.723(12572)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
FRMD8_LS006	chr11:65387121|65393573:+	FRMD8	FERM domain containing 8	protein coding gene	no	ENST00000533782.5;ENST00000355991.9;ENST00000533782.5;ENST00000355991.9	0.318	0.306	0.923	0.649(6216)	0.578(406)	0.469(8156)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SUCLG1_UP_LS0003	chr2:84471719|84486413:-	SUCLG1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein coding gene	no	.	2.016	0.519	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SYTL3_LS0048	chr6:158751133|158751944:-	SYTL3	synaptotagmin like 3	protein coding gene	no	.	1.196	1.457	0.000	0.013(128)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AL356270.1_LS0001	chr1:86571408|86589358:-	AL356270.1	-	lncRNA gene	no	.	2.444	0.331	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
CEBPZOS_LS006	chr2:37197350|37198494:+	CEBPZOS	CEBPZ opposite strand	protein coding gene	no	ENST00000397226.2	0.833	0.362	0.779	0.163(1564)	0.164(115)	0.373(6486)	non tumor-specific	alt_3prime;exon_skip	yes
TMED9_LS004	chr5:177593775|177594139:+	TMED9	transmembrane p24 trafficking protein 9	protein coding gene	no	ENST00000332598.6;ENST00000513799.5;ENST00000510499.1	659.992	304.876	249.322	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_IRF2BP2_LS0016	chr1:234607398|234607563:-	IRF2BP2	interferon regulatory factor 2 binding protein 2	protein coding gene	no	.	15.772	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_RXYLT1_LS0005	chr12:63780462|63781024:+	RXYLT1	ribitol xylosyltransferase 1	protein coding gene	no	.	2.448	0.696	0.000	0.013(127)	0.016(11)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SIK1_LS012	chr21:43421799|43421974:-	SIK1	salt inducible kinase 1	protein coding gene	yes	ENST00000270162.7;ENST00000644689.1;ENST00000644750.1	20.755	29.463	0.743	0.9(8623)	0.983(690)	0.201(3494)	non tumor-specific	intron_retention	yes
UN_AC245297.1_LS0021	chr1:149267024|149285454:-	AC245297.1	-	pseudogene	no	.	32.147	7.044	0.000	0.01(93)	0.009(6)	0(0)	non tumor-specific	nAS	no
GDA_LS003	chr9:72149682|72195504:+	GDA	solute carrier family 25 member 16	protein coding gene	no	ENST00000376986.5	0.511	0.210	1.235	0.058(556)	0.108(76)	0.084(1465)	non tumor-specific	alt_3prime	yes
NELFE_LS009	chr6:31955293|31956693:-	NELFE	negative elongation factor complex member E	protein coding gene	no	ENST00000375429.7;ENST00000492185.5;ENST00000488426.5;ENST00000481121.5;ENST00000375425.9;ENST00000444811.6;ENST00000441998.5;ENST00000454913.5;ENST00000436289.6;ENST00000492539.5;ENST00000426722.5;ENST00000491139.5;ENST00000494956.1	83.895	46.432	114.794	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
ABCA2_LS031	chr9:137015596|137015675:-	ABCA2	ATP binding cassette subfamily A member 2	protein coding gene	no	ENST00000341511.10;ENST00000371605.7;ENST00000265662.9;ENST00000614293.4;ENST00000479446.5;ENST00000459850.5;ENST00000487109.5;ENST00000488535.2	11.894	9.225	23.402	0.922(8829)	0.972(682)	0.976(16968)	non tumor-specific	nAS	yes
UN_CCL16_UP_LS0003	chr17:35981566|35981818:-	CCL16	C-C motif chemokine ligand 16	protein coding gene	no	.	1.039	0.956	0.000	0.007(69)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_CREBL2_LS0015	chr12:12637714|12641280:+	CREBL2	cAMP responsive element binding protein like 2	protein coding gene	no	.	1.010	0.269	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SHLD2_LS0058	chr10:87104962|87121792:+	SHLD2	shieldin complex subunit 2	protein coding gene	no	.	1.101	0.115	0.000	0.008(75)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_CARD8_LS0037	chr19:48249631|48249751:-	CARD8	caspase recruitment domain family member 8	protein coding gene	no	.	3.707	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
RYR1_LS107	chr19:38567917|38570607:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7	2.938	1.911	3.320	0.588(5636)	0.689(484)	0.835(14513)	non tumor-specific	exon_skip	yes
UN_ZKSCAN1_LS0016	chr7:100024307|100033305:+	ZKSCAN1	zinc finger with KRAB and SCAN domains 1	protein coding gene	no	.	1.658	0.183	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MBOAT7_LS0058	chr19:54178941|54180018:-	MBOAT7	membrane bound O-acyltransferase domain containing 7	protein coding gene	no	.	11.302	1.222	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
RFX4_LS021	chr12:106709430|106711453:+	RFX4	regulatory factor X4	protein coding gene	no	ENST00000392842.5;ENST00000539967.6;ENST00000357881.8;ENST00000536722.5;ENST00000536688.5;ENST00000229387.6	11.625	1.475	17.658	0.075(721)	0.009(6)	0.213(3708)	non tumor-specific	nAS	yes
CYP3A51P_LS002	chr7:99695839|99699964:-	CYP3A51P	cytochrome P450 family 3 subfamily A member 51, pseudogene	pseudogene	no	ENST00000633513.1	2.862	0.000	0.720	0(1)	0(0)	0.007(123)	non tumor-specific	nAS	yes
UN_BTBD2_LS0005	chr19:1985568|1985641:+	BTBD2	BTB domain containing 2	protein coding gene	no	.	4.962	0.031	0.000	0.013(120)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYT1L_LS0013	chr2:1829112|1833811:+	MYT1L	myelin transcription factor 1 like	protein coding gene	no	.	5.165	0.576	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	nAS	no
PNLIPRP3_LS003	chr10:116443174|116444382:+	PNLIPRP3	pancreatic lipase related protein 3	protein coding gene	no	ENST00000369230.3	9.217	3.350	2.594	0.064(609)	0.067(47)	0.229(3989)	non tumor-specific	nAS	yes
UN_EIF2D_LS0010	chr1:206602480|206602951:-	EIF2D	eukaryotic translation initiation factor 2D	protein coding gene	no	.	10.214	0.605	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLCH2_LS022	chr1:2497010|2498523:+	PLCH2	phospholipase C eta 2	protein coding gene	no	ENST00000278878.6	2.747	0.553	1.523	0.051(491)	0.016(11)	0.346(6022)	non tumor-specific	exon_skip	yes
CCNK_LS008	chr14:99492874|99493514:+	CCNK	cyclin K	protein coding gene	no	ENST00000557165.5;ENST00000389879.9;ENST00000557441.5;ENST00000555049.5;ENST00000555842.1;ENST00000556641.5	43.016	24.380	30.424	0.983(9416)	0.993(697)	0.979(17019)	non tumor-specific	nAS	yes
UN_GARS-DT_LS0009	chr7:30563381|30563723:-	GARS-DT	GARS1 divergent transcript	lncRNA gene	no	.	3.256	0.071	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CREBBP_LS013	chr16:3744961|3745277:-	CREBBP	CREB binding protein	protein coding gene	yes	ENST00000262367.9;ENST00000382070.7;ENST00000570939.2;ENST00000573517.6;ENST00000572569.1	9.027	7.014	34.639	0.968(9278)	0.99(695)	0.979(17013)	non tumor-specific	nAS	yes
TTTY4C_LS003	chrY:25072721|25099732:-	TTTY4C	testis-specific transcript, Y-linked 4C	lncRNA gene	no	ENST00000456123.1	0.270	0.053	0.367	0.006(56)	0.026(18)	0(1)	non tumor-specific	nAS	yes
CFAP74_LS029	chr1:1955850|1959120:-	CFAP74	cilia and flagella associated protein 74	protein coding gene	no	ENST00000493316.5;ENST00000493316.5;ENST00000493316.5	0.049	0.015	1.049	0.002(23)	0.003(2)	0.022(375)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SORBS1_LS0027	chr10:95410777|95414499:-	SORBS1	sorbin and SH3 domain containing 1	protein coding gene	no	.	3.949	25.316	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
ZNF778_LS004	chr16:89221152|89222092:+	ZNF778	zinc finger protein 778	protein coding gene	no	ENST00000433976.6;ENST00000564906.5;ENST00000620195.4;ENST00000567651.5	1.350	1.120	2.446	0.673(6452)	0.782(549)	0.886(15398)	non tumor-specific	exon_skip	yes
UN_SF3A2_LS0041	chr19:2247022|2247566:+	SF3A2	splicing factor 3a subunit 2	protein coding gene	no	.	26.805	1.634	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
AL445465.1_LS003	chr6:75360916|75362766:+	AL445465.1	-	lncRNA gene	no	ENST00000440220.5;ENST00000628384.2	0.728	0.000	0.634	0.001(12)	0(0)	0.045(782)	non tumor-specific	nAS	yes
UN_PRG4_LS0106	chr1:186307517|186308085:-	PRG4	proteoglycan 4	protein coding gene	no	.	2.104	0.314	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
GSTA1_LS008	chr6:52796314|52799181:-	GSTA1	glutathione S-transferase alpha 1	protein coding gene	no	ENST00000476213.1	35.763	103.755	0.785	0.271(2595)	0.557(391)	0.022(390)	non tumor-specific	alt_3prime;exon_skip	yes
APLP2_LS009	chr11:130070082|130120706:+	APLP2	amyloid beta precursor like protein 2	protein coding gene	no	ENST00000533616.5	0.026	0.039	0.775	0.699(6696)	0.849(596)	0.273(4739)	non tumor-specific	exon_skip	yes
ATP6V0A2_LS016	chr12:123748785|123751110:+	ATP6V0A2	ATPase H+ transporting V0 subunit a2	protein coding gene	no	ENST00000330342.7	18.917	9.805	5.903	0.956(9155)	0.983(690)	0.961(16696)	non tumor-specific	exon_skip	yes
PSMD2_LS018	chr3:184303749|184303947:+	PSMD2	proteasome 26S subunit, non-ATPase 2	protein coding gene	no	ENST00000310118.8;ENST00000435761.5;ENST00000439383.5;ENST00000466987.1	186.198	100.903	120.912	0.993(9515)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_PCSK7_LS0076	chr11:117223955|117224078:-	PCSK7	proprotein convertase subtilisin/kexin type 7	protein coding gene	no	.	3.100	0.056	0.000	0.008(79)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AC093772.1_LS0003	chr4:127106774|127162187:-	AC093772.1	-	lncRNA gene	no	.	1.186	0.663	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
NALCN_LS020	chr13:101103339|101104295:-	NALCN	sodium leak channel, non-selective	protein coding gene	no	ENST00000251127.10;ENST00000648359.1	3.729	2.956	2.521	0.18(1720)	0.228(160)	0.525(9134)	non tumor-specific	nAS	yes
CAPN7_LS014	chr3:15232158|15232519:+	CAPN7	calpain 7	protein coding gene	no	ENST00000415565.1	0.261	0.286	1.159	0.315(3014)	0.383(269)	0.491(8538)	non tumor-specific	exon_skip	yes
UN_PROSER3_LS0069	chr19:35770096|35770230:+	PROSER3	proline and serine rich 3	protein coding gene	no	.	3.341	0.115	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FAM171B_LS0013	chr2:186740875|186743483:+	FAM171B	family with sequence similarity 171 member B	protein coding gene	no	.	0.825	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZACN_LS004	chr17:76079563|76080740:+	ZACN	zinc activated ion channel	protein coding gene	no	ENST00000421794.1	2.284	0.000	0.546	0.001(5)	0(0)	0(3)	non tumor-specific	alt_3prime;mutex_exons	yes
UN_TPM3P6_UP_LS0006	chr19:53437253|53474625:+	TPM3P6	tropomyosin 3 pseudogene 6	pseudogene	no	.	2.677	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SMC4_LS040	chr3:160416415|160419358:+	SMC4	structural maintenance of chromosomes 4	protein coding gene	no	.;.	10.449	2.085	0.000	0.033(320)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TGOLN2_LS0125	chr2:85327386|85327513:-	TGOLN2	trans-golgi network protein 2	protein coding gene	no	.	16.571	7.924	0.000	0.004(37)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
KIAA1211_LS012	chr4:56297996|56298214:+	KIAA1211	capping protein inhibiting regulator of actin dynamics	protein coding gene	no	ENST00000629263.2	0.580	0.018	0.658	0.02(193)	0.003(2)	0.003(51)	non tumor-specific	nAS	yes
UN_SLC9A8_LS0035	chr20:49859603|49864728:+	SLC9A8	solute carrier family 9 member A8	protein coding gene	no	.	1.115	0.174	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_MUC1_LS0437	chr1:155190217|155191806:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	6.706	0.509	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC068587.4_LS0043	chr8:12531031|12552090:+	AC068587.4	-	lncRNA gene	no	.	1.478	0.284	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
BCAT2_LS024	chr19:48808311|48810984:-	BCAT2	branched chain amino acid transaminase 2	protein coding gene	no	ENST00000596981.1	0.022	0.003	0.747	0.41(3926)	0.395(277)	0.197(3420)	non tumor-specific	alt_3prime	yes
UN_CDK19_LS0043	chr6:110670541|110710559:-	CDK19	cyclin dependent kinase 19	protein coding gene	no	.	1.224	0.142	0.000	0.011(105)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ATXN7L1_LS0038	chr7:105784620|105788604:-	ATXN7L1	ataxin 7 like 1	protein coding gene	no	.	2.343	0.260	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
CCND2_LS004	chr12:4278919|4288842:+	CCND2	cyclin D2	protein coding gene	no	ENST00000261254.7;ENST00000536795.1	47.413	21.824	13.709	0.966(9255)	0.959(673)	0.956(16614)	non tumor-specific	exon_skip	yes
ENTR1_LS020	chr9:136407938|136410328:-	ENTR1	endosome associated trafficking regulator 1	protein coding gene	no	ENST00000371725.7	2.366	1.578	9.568	0.959(9188)	0.977(686)	0.971(16870)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LRRC8A_LS0070	chr9:128908970|128909154:-	LRRC8A	leucine rich repeat containing 8 VRAC subunit A	protein coding gene	no	.	3.965	0.695	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RPS23P4_UP_LS0004	chr4:145337313|145343450:-	RPS23P4	ribosomal protein S23 pseudogene 4	pseudogene	no	.	1.154	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF284_LS004	chr19:44082105|44085714:+	ZNF284	zinc finger protein 284	protein coding gene	no	ENST00000421176.3	3.316	1.781	2.540	0.738(7070)	0.741(520)	0.869(15101)	non tumor-specific	nAS	yes
TCF12_LS002	chr15:56918906|56919902:+	TCF12	transcription factor 12	protein coding gene	no	ENST00000438423.6;ENST00000557843.5	0.175	0.267	0.717	0.411(3934)	0.514(361)	0.273(4738)	non tumor-specific	alt_3prime	yes
CDHR3_LS011	chr7:105912572|105974844:+	CDHR3	cadherin related family member 3	protein coding gene	no	.;.	2.111	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF384_LS023	chr12:6679183|6679455:-	ZNF384	zinc finger protein 384	protein coding gene	no	ENST00000319770.7;ENST00000396801.7;ENST00000361959.7;ENST00000355772.8;ENST00000417772.7;ENST00000436774.6;ENST00000540915.5;ENST00000535485.5;ENST00000538829.5;ENST00000542351.5;ENST00000544482.1;ENST00000537248.5	47.555	23.317	37.409	0.979(9382)	0.991(696)	0.979(17017)	non tumor-specific	nAS	yes
UN_AKNA_UP_LS0003	chr9:114394410|114398440:-	AKNA	AT-hook transcription factor	protein coding gene	no	.	1.701	0.490	0.000	0.032(308)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
UN_AC048382.3_UP_LS0003	chr15:84424390|84503141:+	AC048382.3	-	pseudogene	no	.	2.769	1.786	0.000	0.03(285)	0.01(7)	0(0)	non tumor-specific	nAS	no
CASP8_LS001	chr2:201233554|201234016:+	CASP8	caspase 8	protein coding gene	yes	ENST00000392263.6;ENST00000264274.13;ENST00000432109.6	0.492	0.350	1.195	0.762(7298)	0.808(567)	0.402(6989)	non tumor-specific	alt_5prime	yes
LPAL2_LS010	chr6:160477288|160478508:-	LPAL2	lipoprotein(a) like 2, pseudogene	pseudogene	no	ENST00000454031.6;ENST00000435757.6;ENST00000335388.5	2.871	1.082	1.019	0.04(386)	0.084(59)	0.437(7597)	non tumor-specific	nAS	yes
UN_LINC00221_UP_LS0022	chr14:106012155|106421946:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	33.557	8.189	0.000	0.055(530)	0.101(71)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS0120	chr11:62518093|62520008:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.156	0.916	0.000	0.005(46)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AC021739.5_UP_LS0004	chr15:85752985|85755822:-	AC021739.5	-	lncRNA gene	no	.	1.893	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL662789.1_UP_LS0010	chr6:32591195|32660200:+	AL662789.1	-	lncRNA gene	no	.	1.925	0.095	0.000	0.007(71)	0.001(1)	0(0)	non tumor-specific	nAS	no
APPL2_LS029	chr12:105217725|105235959:-	APPL2	symbol withdrawn, see [HGNC:598](/data/gene-symbol-report/#!/hgnc_id/HGNC:598)	protein coding gene	no	ENST00000553097.5	0.088	0.253	0.646	0.784(7510)	0.863(606)	0.101(1748)	non tumor-specific	exon_skip	yes
SUPT20H_LS030	chr13:37028305|37031567:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000495071.6;ENST00000490602.5	0.313	0.224	0.766	0.648(6204)	0.695(488)	0.314(5466)	non tumor-specific	exon_skip	yes
UN_UGGT1_LS0062	chr2:128191582|128193537:+	UGGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein coding gene	no	.	2.214	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	intron_retention	no
ARHGEF6_LS011	chrX:136682844|136685677:-	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000370620.5;ENST00000370622.5;ENST00000250617.6	24.062	11.398	14.796	0.801(7675)	0.947(665)	0.971(16874)	non tumor-specific	nAS	yes
SESN1_LS012	chr6:109088243|109090595:-	SESN1	sestrin 1	protein coding gene	no	ENST00000517548.1	0.174	0.059	0.642	0.009(84)	0.009(6)	0.038(669)	non tumor-specific	nAS	yes
SLC1A6_LS009	chr19:14968507|14971737:-	SLC1A6	solute carrier family 1 member 6	protein coding gene	no	ENST00000221742.7;ENST00000600144.5;ENST00000598504.5;ENST00000544886.6;ENST00000596697.1;ENST00000597262.1;ENST00000599636.1	6.818	2.290	12.376	0.155(1486)	0.051(36)	0.285(4955)	non tumor-specific	exon_skip	yes
UN_CD81_LS0137	chr11:2397198|2397252:-	CD81	CD81 molecule	protein coding gene	no	.	20.585	0.308	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FAM104B_LS0013	chrX:55159228|55160835:-	FAM104B	family with sequence similarity 104 member B	protein coding gene	no	.	1.060	0.531	0.000	0.219(2095)	0.252(177)	0(0)	non tumor-specific	alt_5prime	no
ORC2_LS020	chr2:200959440|200963049:-	ORC2	origin recognition complex subunit 2	protein coding gene	no	ENST00000457595.1	0.189	0.052	0.637	0.257(2467)	0.291(204)	0.03(530)	non tumor-specific	alt_5prime	yes
UN_AHNAK_LS0189	chr11:62519058|62519119:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	4.720	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BANP_LS0044	chr16:88022430|88027483:+	BANP	BTG3 associated nuclear protein	protein coding gene	yes	.	1.938	0.185	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARID1B_LS019	chr6:157110561|157148624:+	ARID1B	AT-rich interaction domain 1B	protein coding gene	no	ENST00000635849.1	4.149	2.751	1.096	0.099(945)	0.144(101)	0.613(10656)	non tumor-specific	exon_skip	yes
UN_ZNF444_LS0126	chr19:56160646|56160744:-	ZNF444	zinc finger protein 444	protein coding gene	no	.	2.235	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1257_LS014	chr3:128977066|128978045:-	KIAA1257	cilia and flagella associated protein 92 (putative)	protein coding gene	no	ENST00000511438.5;ENST00000645291.1;ENST00000265068.9;ENST00000515659.1;ENST00000507225.1;ENST00000510149.1	1.020	0.274	1.569	0.544(5213)	0.526(369)	0.62(10776)	non tumor-specific	exon_skip	yes
CLK2_LS020	chr1:155268359|155269488:-	CLK2	CDC like kinase 2	protein coding gene	no	ENST00000476983.5;ENST00000476983.5	0.570	0.561	3.334	0.908(8699)	0.913(641)	0.87(15123)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
IQGAP3_LS031	chr1:156561021|156561838:-	IQGAP3	IQ motif containing GTPase activating protein 3	protein coding gene	no	ENST00000361170.6;ENST00000491900.1	8.714	1.440	1.571	0.687(6586)	0.211(148)	0.417(7251)	non tumor-specific	exon_skip	yes
UN_CPEB2_LS0029	chr4:15063883|15066153:+	CPEB2	cytoplasmic polyadenylation element binding protein 2	protein coding gene	no	.	0.476	0.212	0.000	0.013(125)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_ASTN1_LS0014	chr1:176963785|176965163:-	ASTN1	astrotactin 1	protein coding gene	no	.	4.978	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime	no
NBPF10_LS072	chr1:146126408|146127028:-	NBPF10	NBPF member 10	protein coding gene	no	ENST00000583866.8;ENST00000617010.2	3.639	1.398	1.099	0.127(1214)	0.192(135)	0.381(6631)	non tumor-specific	nAS	yes
LIPC_LS004	chr15:58432120|58538333:+	LIPC	lipase C, hepatic type	protein coding gene	no	ENST00000356113.10;ENST00000414170.7;ENST00000299022.9;ENST00000433326.2	7.799	11.879	1.111	0.322(3082)	0.523(367)	0.431(7493)	non tumor-specific	exon_skip	yes
UN_GAB2_LS0002	chr11:78216040|78226878:+	GAB2	GRB2 associated binding protein 2	protein coding gene	yes	.	1.119	0.183	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TANC2_LS0039	chr17:63423856|63423892:+	TANC2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein coding gene	no	.	1.723	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC025166.1_UP_LS0005	chr15:40873923|40874310:+	AC025166.1	-	lncRNA gene	no	.	1.889	0.015	0.000	0.032(304)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC083837.2_LS0039	chr8:78938622|78939909:+	AC083837.2	-	no	no	.	1.866	0.007	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLA2R1_LS0048	chr2:160042142|160044774:-	PLA2R1	phospholipase A2 receptor 1	protein coding gene	yes	.	2.297	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_HDAC4_LS0037	chr2:239182870|239183358:+	HDAC4	histone deacetylase 4	protein coding gene	no	.	2.093	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF687_UP_LS0002	chr1:151267339|151268737:+	ZNF687	zinc finger protein 687	protein coding gene	no	.	1.013	0.177	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CNNM2_LS0018	chr10:103054466|103054663:+	CNNM2	cyclin and CBS domain divalent metal cation transport mediator 2	protein coding gene	no	.	1.239	0.649	0.000	0.005(51)	0.031(22)	0(0)	non tumor-specific	exon_skip	no
UN_CMC2_LS0005	chr16:80980883|80981806:-	CMC2	C-X9-C motif containing 2	protein coding gene	no	.	4.815	0.492	0.000	0.014(134)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
AC024610.2_LS001	chr17:33828481|33833938:-	AC024610.2	-	lncRNA gene	no	ENST00000636084.1	3.569	0.115	0.830	0.001(9)	0.001(1)	0.052(910)	non tumor-specific	nAS	yes
SPOCK2_LS011	chr10:72072258|72072503:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	ENST00000373109.6;ENST00000317376.8;ENST00000536168.2	87.678	82.748	7.259	0.956(9158)	0.974(684)	0.912(15860)	non tumor-specific	nAS	yes
PHRF1_LS017	chr11:605300|605605:+	PHRF1	PHD and ring finger domains 1	protein coding gene	no	ENST00000534320.5;ENST00000264555.9;ENST00000533464.5;ENST00000532550.1	12.242	7.135	22.157	0.977(9364)	0.993(697)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
CDH23_LS040	chr10:71712817|71724052:+	CDH23	cadherin related 23	protein coding gene	no	ENST00000398809.8	0.091	0.061	0.701	0.015(143)	0.033(23)	0.068(1189)	non tumor-specific	nAS	yes
UN_KIAA0513_LS0002	chr16:85027858|85036715:+	KIAA0513	KIAA0513	protein coding gene	no	.	0.720	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CFAP221_LS035	chr2:119629955|119630570:+	CFAP221	cilia and flagella associated protein 221	protein coding gene	no	ENST00000295220.10;ENST00000413057.6;ENST00000413369.7;ENST00000443972.5;ENST00000600951.1	8.131	6.956	3.189	0.362(3470)	0.533(374)	0.511(8883)	non tumor-specific	nAS	yes
MICAL2_LS048	chr11:12259897|12260636:+	MICAL2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein coding gene	no	ENST00000526604.1	0.599	0.351	0.891	0.316(3031)	0.366(257)	0.331(5758)	non tumor-specific	intron_retention	yes
UN_CDC42BPB_LS0059	chr14:102956290|102959631:-	CDC42BPB	CDC42 binding protein kinase beta	protein coding gene	no	.	3.907	4.410	0.000	0.026(252)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
RAB5A_LS003	chr3:19947521|19950806:+	RAB5A	RAB5A, member RAS oncogene family	protein coding gene	no	ENST00000273047.8;ENST00000412966.5;ENST00000446547.5;ENST00000422242.1;ENST00000476544.1;ENST00000273047.8;ENST00000412966.5;ENST00000446547.5;ENST00000422242.1;ENST00000476544.1	22.089	18.445	41.574	0.972(9314)	0.99(695)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ANKRD36B_LS0025	chr2:97550159|97551289:-	ANKRD36B	ankyrin repeat domain 36B	protein coding gene	no	.	8.233	0.102	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCARE_LS002	chr2:29065067|29070594:-	PCARE	photoreceptor cilium actin regulator	protein coding gene	no	ENST00000331664.5	0.134	0.176	0.861	0.047(451)	0.158(111)	0.091(1574)	non tumor-specific	nAS	yes
UN_FBXL13_LS0042	chr7:102968117|102973766:-	FBXL13	F-box and leucine rich repeat protein 13	protein coding gene	yes	.	0.449	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLBD2_LS0158	chr12:113390181|113390266:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	1.358	0.051	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCDC92B_LS003	chr17:2735168|2749411:-	CCDC92B	coiled-coil domain containing 92B	pseudogene	no	ENST00000575506.3	3.231	0.313	11.848	0.121(1164)	0.011(8)	0.217(3776)	non tumor-specific	nAS	yes
AL035685.1_LS006	chr20:49331455|49331946:+	AL035685.1	-	pseudogene	no	ENST00000637575.1;ENST00000637091.1	2.888	0.236	2.804	0.011(110)	0.001(1)	0.17(2950)	non tumor-specific	nAS	yes
UN_AHRR_LS0061	chr5:428006|430207:+	AHRR	aryl-hydrocarbon receptor repressor	protein coding gene	yes	.	2.367	0.278	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
COL5A3_LS011	chr19:9966426|9966536:-	COL5A3	collagen type V alpha 3 chain	protein coding gene	no	ENST00000264828.3	14.249	5.971	36.591	0.883(8458)	0.815(572)	0.959(16663)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC019117.2_LS0073	chr7:17403756|17405536:-	AC019117.2	-	protein coding gene	no	.	2.413	0.280	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
NCBP3_LS022	chr17:3843151|3846041:-	NCBP3	nuclear cap binding subunit 3	protein coding gene	no	ENST00000389005.5	14.004	10.470	18.418	0.961(9205)	0.986(692)	0.978(16993)	non tumor-specific	exon_skip	yes
UN_HLA-DRB9_UP_LS0083	chr6:32519640|32554832:-	HLA-DRB9	major histocompatibility complex, class II, DR beta 9 (pseudogene)	pseudogene	no	.	341.077	46.144	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL353807.3_UP_LS0036	chr1:155668673|155767495:-	AL353807.3	-	pseudogene	no	.	10.190	0.362	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF384_LS010	chr12:6672532|6673216:-	ZNF384	zinc finger protein 384	protein coding gene	no	ENST00000396801.7;ENST00000361959.7;ENST00000537383.1;ENST00000417772.7	14.631	9.394	26.777	0.982(9412)	0.99(695)	0.978(17007)	non tumor-specific	exon_skip;intron_retention	yes
UN_KCNC4_LS0031	chr1:110245503|110247249:+	KCNC4	potassium voltage-gated channel subfamily C member 4	protein coding gene	no	.	0.840	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GARS_LS009	chr7:30603122|30603496:+	GARS	glycyl-tRNA synthetase 1	protein coding gene	no	ENST00000389266.7;ENST00000478124.5	111.585	47.528	47.344	0.991(9493)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_AL157414.2_UP_LS0003	chr20:56735717|56738278:+	AL157414.2	-	lncRNA gene	no	.	1.524	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NUS1_LS0010	chr6:117691777|117693042:+	NUS1	NUS1 dehydrodolichyl diphosphate synthase subunit	protein coding gene	no	.	2.147	0.220	0.000	0.025(239)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RGS3_LS0056	chr9:113565165|113565515:+	RGS3	regulator of G protein signaling 3	protein coding gene	no	.	1.054	0.480	0.000	0.007(64)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SGSH_LS0024	chr17:80211187|80211869:-	SGSH	N-sulfoglucosamine sulfohydrolase	protein coding gene	no	.	5.729	0.459	0.000	0.006(61)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
DUOX1_LS012	chr15:45135675|45135782:+	DUOX1	dual oxidase 1	protein coding gene	no	ENST00000321429.8;ENST00000389037.7;ENST00000561220.6	8.450	13.169	3.493	0.439(4208)	0.551(387)	0.488(8474)	non tumor-specific	alt_3prime;intron_retention	yes
NCALD_LS029	chr8:101786052|101788779:-	NCALD	neurocalcin delta	protein coding gene	no	ENST00000521371.1	0.023	0.008	0.699	0.025(235)	0.063(44)	0.039(684)	non tumor-specific	exon_skip	yes
UN_AL356095.2_UP_LS0005	chr10:80144798|80147946:-	AL356095.2	-	lncRNA gene	no	.	0.558	0.033	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAB36_LS011	chr22:23160998|23161500:+	RAB36	RAB36, member RAS oncogene family	protein coding gene	no	ENST00000263116.6;ENST00000341989.8	9.167	7.791	3.630	0.792(7587)	0.842(591)	0.855(14866)	non tumor-specific	alt_3prime;alt_5prime	yes
MARCH6_LS028	chr5:10402607|10403407:+	MARCH6	membrane associated ring-CH-type finger 6	protein coding gene	no	ENST00000449913.6;ENST00000511802.5;ENST00000503788.5;ENST00000274140.9;ENST00000510792.1	83.189	48.130	71.156	0.986(9445)	0.993(697)	0.979(17019)	non tumor-specific	exon_skip	yes
FERMT2_LS033	chr14:52950577|52952318:-	FERMT2	fermitin family member 2	protein coding gene	no	ENST00000554712.5	0.058	0.068	0.625	0.2(1913)	0.392(275)	0.042(732)	non tumor-specific	nAS	yes
HNRNPA2B1_LS018	chr7:26193649|26196557:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	.;.	95.635	10.418	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC01579_LS018	chr15:94066879|94070524:-	LINC01579	long intergenic non-protein coding RNA 1579	lncRNA gene	no	ENST00000556447.5;ENST00000555772.1	2.136	0.540	1.604	0.203(1942)	0.194(136)	0.218(3795)	non tumor-specific	nAS	yes
UN_ACOX3_LS0005	chr4:8367080|8381492:-	ACOX3	acyl-CoA oxidase 3, pristanoyl	protein coding gene	no	.	2.684	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	exon_skip	no
COL12A1_LS080	chr6:75194947|75202720:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000416123.6;ENST00000483888.6	4.993	1.885	2.592	0.522(5000)	0.623(437)	0.606(10538)	non tumor-specific	exon_skip	yes
VPS8_LS017	chr3:184824785|184826163:+	VPS8	VPS8 subunit of CORVET complex	protein coding gene	no	ENST00000287546.8;ENST00000436792.6;ENST00000446204.6;ENST00000422105.5;ENST00000625842.2;ENST00000453056.5;ENST00000441141.5;ENST00000445089.5;ENST00000424463.4	5.078	4.487	7.603	0.845(8097)	0.909(638)	0.959(16673)	non tumor-specific	exon_skip	yes
TRHDE_LS013	chr12:72560755|72562165:+	TRHDE	thyrotropin releasing hormone degrading enzyme	protein coding gene	no	ENST00000549138.5	0.124	0.000	0.756	0.002(22)	0.001(1)	0.001(26)	non tumor-specific	nAS	yes
UN_BEND4_LS0007	chr4:42143994|42151734:-	BEND4	BEN domain containing 4	protein coding gene	no	.	1.486	0.128	0.000	0.007(70)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_FCGBP_LS0091	chr19:39876797|39893050:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	16.451	7.278	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ANKRD11_LS0180	chr16:89299836|89300242:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	.	2.907	0.299	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
TUBA1C_LS004	chr12:49228166|49257884:+	TUBA1C	tubulin alpha 1c	protein coding gene	no	ENST00000552125.1	0.091	0.020	0.784	0.056(541)	0.057(40)	0.079(1365)	non tumor-specific	exon_skip	yes
PKIG_LS002	chr20:44531978|44589797:+	PKIG	cAMP-dependent protein kinase inhibitor gamma	protein coding gene	no	ENST00000372894.7	19.601	15.499	51.818	0.972(9312)	0.977(686)	0.976(16972)	non tumor-specific	exon_skip	yes
FXYD6-FXYD2_LS003	chr11:117820895|117822406:-	FXYD6-FXYD2	FXYD6-FXYD2 readthrough	protein coding gene	no	ENST00000614497.5	891.305	1125.932	3.673	0.685(6562)	0.84(590)	0.867(15072)	non tumor-specific	nAS	yes
UN_GIT1_LS0084	chr17:29576629|29576863:-	GIT1	GIT ArfGAP 1	protein coding gene	no	.	16.301	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MYL12BP2_UP_LS0005	chr4:184316449|184316958:-	MYL12BP2	myosin light chain 12B pseudogene 2	pseudogene	no	.	3.667	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC015802.6_LS0001	chr17:76563753|76563779:-	AC015802.6	-	protein coding gene	no	.	1.638	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ASPSCR1_LS043	chr17:82016869|82016941:+	ASPSCR1	ASPSCR1 tether for SLC2A4, UBX domain containing	protein coding gene	yes	ENST00000306729.11;ENST00000306739.8;ENST00000580534.5;ENST00000584454.5;ENST00000582355.6;ENST00000577733.5;ENST00000581608.5;ENST00000583744.1;ENST00000578361.5;ENST00000583142.5;ENST00000582404.5;ENST00000585140.1	58.111	26.053	47.137	0.994(9526)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_KRT6A_LS0043	chr12:52487753|52488361:+	KRT6A	keratin 6A	protein coding gene	no	.	32.338	35.198	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	nAS	no
EDEM3_LS016	chr1:184708344|184710394:-	EDEM3	ER degradation enhancing alpha-mannosidase like protein 3	protein coding gene	no	ENST00000318130.12;ENST00000367512.7;ENST00000439962.1;ENST00000318130.12;ENST00000367512.7;ENST00000439962.1	25.796	19.604	12.034	0.908(8704)	0.972(682)	0.963(16732)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL591684.2_LS0020	chr10:47530689|47530841:-	AL591684.2	-	lncRNA gene	no	.	1.138	0.315	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	nAS	no
CNTNAP2_LS005	chr7:147044054|147108147:+	CNTNAP2	contactin associated protein 2	protein coding gene	yes	ENST00000361727.7;ENST00000649351.1;ENST00000637150.1;ENST00000636561.1;ENST00000637694.1;ENST00000638117.1;ENST00000637555.1;ENST00000636870.1;ENST00000637825.1	5.253	2.490	1.870	0.082(785)	0.058(41)	0.138(2393)	non tumor-specific	nAS	yes
UN_RNF26_LS0008	chr11:119334927|119335429:-	RNF26	ring finger protein 26	protein coding gene	no	.	2.116	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PLXNA2_LS006	chr1:208033509|208034493:-	PLXNA2	plexin A2	protein coding gene	no	ENST00000367033.3	28.034	23.061	23.309	0.943(9032)	0.976(685)	0.966(16797)	non tumor-specific	exon_skip	yes
UN_AC013553.4_UP_LS0003	chr15:65089662|65093014:-	AC013553.4	-	lncRNA gene	no	.	1.037	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
BTNL9_LS021	chr5:181053501|181055989:+	BTNL9	butyrophilin like 9	protein coding gene	no	.;.	1.513	0.108	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SRGAP2B_LS0020	chr1:144995200|145067212:-	SRGAP2B	SLIT-ROBO Rho GTPase activating protein 2B	protein coding gene	no	.	1.993	0.398	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	nAS	no
LAT_LS003	chr16:28985226|28985376:+	LAT	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000564277.5	0.018	0.006	0.785	0.236(2257)	0.189(133)	0.258(4488)	non tumor-specific	alt_5prime;intron_retention	yes
UN_COL6A2_LS0218	chr21:46132459|46132505:-	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	.	26.067	10.330	0.000	0.021(205)	0.017(12)	0(0)	non tumor-specific	nAS	no
TMOD2_LS011	chr15:51782828|51798197:+	TMOD2	tropomodulin 2	protein coding gene	no	ENST00000249700.8;ENST00000539962.6;ENST00000561407.1	10.410	8.608	6.042	0.725(6950)	0.86(604)	0.943(16389)	non tumor-specific	exon_skip	yes
UN_C8orf34-AS1_LS0004	chr8:68306598|68308860:-	C8orf34-AS1	C8orf34 antisense RNA 1	lncRNA gene	no	.	3.493	1.666	0.000	0.073(704)	0.181(127)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
STARD3_LS033	chr17:39658026|39658413:+	STARD3	StAR related lipid transfer domain containing 3	protein coding gene	no	ENST00000582874.1	7.856	3.516	1.104	0.823(7888)	0.862(605)	0.651(11309)	non tumor-specific	alt_3prime;intron_retention	yes
UN_MLIP_LS0016	chr6:53995059|53996975:+	MLIP	muscular LMNA interacting protein	protein coding gene	no	.	2.015	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
STIM1_LS006	chr11:3888155|3921812:+	STIM1	stromal interaction molecule 1	protein coding gene	no	ENST00000524822.5	10.572	0.000	0.646	0.001(7)	0(0)	0.001(16)	non tumor-specific	nAS	yes
HRAS_LS010	chr11:533358|533453:-	HRAS	HRas proto-oncogene, GTPase	protein coding gene	yes	ENST00000478324.5;ENST00000397594.5;ENST00000493230.5;ENST00000417302.5;ENST00000462734.1	14.365	5.470	35.949	0.991(9492)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CHD8_LS0029	chr14:21391501|21391833:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	.	2.366	0.046	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_OAS3_LS0018	chr12:112949130|112950693:+	OAS3	2'-5'-oligoadenylate synthetase 3	protein coding gene	no	.	0.233	0.624	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PSMD4_LS018	chr1:151266121|151266308:+	PSMD4	proteasome 26S subunit, non-ATPase 4	protein coding gene	no	ENST00000368881.8	61.613	26.654	12.343	0.997(9553)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_CELSR3_LS0009	chr3:48643680|48644216:-	CELSR3	cadherin EGF LAG seven-pass G-type receptor 3	protein coding gene	no	.	3.281	1.118	0.000	0.22(2109)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
AC015688.3_LS001	chr17:27670720|27671205:-	AC015688.3	-	pseudogene	no	ENST00000579001.1	3.065	0.000	0.677	0(1)	0(0)	0.003(56)	non tumor-specific	nAS	yes
GRK6_LS009	chr5:177432107|177432233:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000502598.5;ENST00000506296.5;ENST00000511244.5;ENST00000355472.9;ENST00000507633.5;ENST00000393576.7;ENST00000355958.9;ENST00000528793.5;ENST00000515666.5	37.484	19.936	25.075	0.991(9495)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
ADCY1_LS003	chr7:45592908|45610379:+	ADCY1	adenylate cyclase 1	protein coding gene	no	ENST00000432715.5;ENST00000297323.11;ENST00000621543.1	7.779	4.152	2.267	0.487(4662)	0.55(386)	0.711(12357)	non tumor-specific	exon_skip	yes
UN_IFNAR1_LS0009	chr21:33345360|33348550:+	IFNAR1	interferon alpha and beta receptor subunit 1	protein coding gene	no	.	4.539	1.261	0.000	0.089(852)	0.041(29)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC002127.2_UP_LS0003	chr7:88681547|88696753:+	AC002127.2	-	lncRNA gene	no	.	3.796	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CARD16_LS002	chr11:105041719|105044392:-	CARD16	caspase recruitment domain family member 16	protein coding gene	no	ENST00000375706.6;ENST00000528513.1	7.668	5.737	11.168	0.955(9147)	0.969(680)	0.968(16822)	non tumor-specific	nAS	yes
UN_ZNF826P_LS0014	chr19:20358333|20369157:+	ZNF826P	zinc finger protein 826, pseudogene	pseudogene	no	.	3.320	0.000	0.000	0.006(55)	0(0)	0(0)	non tumor-specific	nAS	no
SNCB_LS001	chr5:176620843|176621214:-	SNCB	synuclein beta	protein coding gene	no	ENST00000310112.7;ENST00000614675.4;ENST00000393693.6;ENST00000510387.5;ENST00000506696.1	22.858	80.750	1.749	0.237(2274)	0.048(34)	0.538(9354)	non tumor-specific	alt_3prime	yes
ZNF534_LS008	chr19:52434120|52435081:+	ZNF534	zinc finger protein 534	protein coding gene	no	ENST00000332323.10	0.413	0.069	0.859	0.029(274)	0.004(3)	0.067(1156)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CASC15_LS018	chr6:22110920|22173998:+	CASC15	cancer susceptibility 15	lncRNA gene	no	ENST00000606851.5	2.132	0.470	1.192	0.145(1385)	0.162(114)	0.417(7243)	non tumor-specific	nAS	yes
TMEM53_LS008	chr1:44654119|44654940:-	TMEM53	transmembrane protein 53	protein coding gene	no	.;.	0.689	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PSG7_UP_LS0001	chr19:42944102|42944392:-	PSG7	pregnancy specific beta-1-glycoprotein 7	protein coding gene	no	.	7.071	1.052	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SLC39A3_LS0060	chr19:2737379|2739941:-	SLC39A3	solute carrier family 39 member 3	protein coding gene	no	.	15.754	2.166	0.000	0.02(192)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_RAE1_LS0009	chr20:57374801|57376179:+	RAE1	ribonuclease A family member 7	protein coding gene	no	.	6.486	2.183	0.000	0.157(1507)	0.16(112)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL031598.1_UP_LS0004	chr16:1074016|1078842:+	AL031598.1	-	lncRNA gene	no	.	1.615	0.358	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC099811.2_LS005	chr17:42120370|42128261:-	AC099811.2	-	protein coding gene	no	ENST00000592248.5	0.152	0.059	0.696	0.238(2279)	0.127(89)	0.037(649)	non tumor-specific	exon_skip	yes
SYBU_LS016	chr8:109642929|109644636:-	SYBU	syntabulin	protein coding gene	no	ENST00000533895.5;ENST00000446070.6;ENST00000528647.5;ENST00000529190.5;ENST00000533821.5;ENST00000534184.5	1.837	1.707	2.801	0.525(5030)	0.769(540)	0.773(13434)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC130324.1_UP_LS0002	chr17:30865134|30904066:-	AC130324.1	-	lncRNA gene	no	.	3.067	0.317	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_FRK_LS0021	chr6:116033983|116037929:+	FRK	fyn related Src family tyrosine kinase	protein coding gene	yes	.	1.966	2.316	0.000	0.004(36)	0.007(5)	0(0)	non tumor-specific	nAS	no
SLCO1C1_LS010	chr12:20711510|20715139:+	SLCO1C1	solute carrier organic anion transporter family member 1C1	protein coding gene	no	ENST00000539415.5;ENST00000266509.6;ENST00000545604.5;ENST00000545102.1	3.493	1.006	1.749	0.093(894)	0.027(19)	0.417(7251)	non tumor-specific	exon_skip	yes
ARMCX5-GPRASP2_LS025	chrX:102602102|102605482:+	ARMCX5-GPRASP2	ARMCX5-GPRASP2 readthrough	lncRNA gene	no	ENST00000465548.1	3.580	1.779	0.851	0.262(2507)	0.274(192)	0.424(7377)	non tumor-specific	alt_5prime;exon_skip	yes
PRKCQ-AS1_LS012	chr10:6586880|6588266:+	PRKCQ-AS1	PRKCQ antisense RNA 1	lncRNA gene	no	ENST00000608526.5	0.530	0.237	0.670	0.001(12)	0.003(2)	0.018(309)	non tumor-specific	nAS	yes
UN_LINC00551_UP_LS0009	chr13:106568572|106588492:+	LINC00551	long intergenic non-protein coding RNA 551	lncRNA gene	no	.	2.750	0.503	0.000	0.051(492)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_KLHL7-DT_LS0004	chr7:23104317|23105477:-	KLHL7-DT	KLHL7 divergent transcript	lncRNA gene	no	.	0.922	0.055	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NOP53_LS0041	chr19:47754828|47755377:-	NOP53	NOP53 ribosome biogenesis factor	protein coding gene	no	.	5.085	0.484	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
AKNA_LS023	chr9:114362533|114364560:-	AKNA	AT-hook transcription factor	protein coding gene	no	ENST00000307564.8;ENST00000374088.7;ENST00000223791.7;ENST00000374075.9;ENST00000312033.3	16.034	9.216	11.644	0.927(8880)	0.966(678)	0.969(16845)	non tumor-specific	exon_skip	yes
IMPDH1_LS007	chr7:128394507|128395131:-	IMPDH1	inosine monophosphate dehydrogenase 1	protein coding gene	no	.;.	7.756	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF675_LS0031	chr19:23550049|23557461:+	ZNF675	zinc finger protein 675	protein coding gene	no	.	3.121	1.330	0.000	0.005(45)	0.01(7)	0(0)	non tumor-specific	nAS	no
C8orf34_LS008	chr8:68521971|68532983:+	C8orf34	chromosome 8 open reading frame 34	protein coding gene	no	ENST00000518698.5;ENST00000348340.6;ENST00000337103.8	2.404	1.941	2.215	0.244(2342)	0.463(325)	0.522(9074)	non tumor-specific	exon_skip	yes
GNRHR_LS003	chr4:67744787|67753814:-	GNRHR	gonadotropin releasing hormone receptor	protein coding gene	no	ENST00000226413.4	0.818	0.333	1.204	0.031(299)	0.034(24)	0.038(659)	non tumor-specific	alt_3prime	yes
TMIGD3_LS001	chr1:111483757|111485740:-	TMIGD3	transmembrane and immunoglobulin domain containing 3	protein coding gene	no	ENST00000442484.2;ENST00000369716.8;ENST00000369717.8;ENST00000443498.5	10.794	4.115	3.637	0.644(6171)	0.436(306)	0.804(13980)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_RPL3_LS0053	chr22:39314779|39315441:+	RPL3	ribosomal protein L3	protein coding gene	no	.	34.237	1.472	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCDC173_LS002	chr2:169649346|169650329:-	CCDC173	coiled-coil domain containing 173	protein coding gene	no	ENST00000447353.5	3.942	2.574	1.661	0.169(1618)	0.312(219)	0.458(7962)	non tumor-specific	exon_skip	yes
UN_TMEM259_LS0074	chr19:1011269|1011367:-	TMEM259	transmembrane protein 259	protein coding gene	no	.	30.514	0.778	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_HSPB7_UP_LS0028	chr1:16039021|16062099:-	HSPB7	heat shock protein family B (small) member 7	protein coding gene	yes	.	4.559	0.942	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC104232.1_LS001	chr8:64801526|64802368:-	AC104232.1	-	lncRNA gene	no	ENST00000522106.5;ENST00000523769.1	4.471	0.018	0.939	0.011(109)	0.001(1)	0.138(2406)	non tumor-specific	nAS	yes
UN_VPS53_LS0172	chr17:598912|599171:+	VPS53	VPS53 subunit of GARP complex	protein coding gene	yes	.	1.926	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
APOL3_LS019	chr22:36149142|36156844:-	APOL3	apolipoprotein L3	protein coding gene	no	ENST00000487355.5;ENST00000487355.5;ENST00000487355.5	0.282	0.231	1.023	0.16(1533)	0.226(159)	0.451(7837)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
GPLD1_LS015	chr6:24456637|24460279:-	GPLD1	glycosylphosphatidylinositol specific phospholipase D1	protein coding gene	no	ENST00000230036.1	3.074	2.913	1.979	0.231(2215)	0.491(345)	0.69(11986)	non tumor-specific	nAS	yes
ZNF395_LS014	chr8:28361182|28368449:-	ZNF395	zinc finger protein 395	protein coding gene	no	ENST00000521185.5	0.148	0.011	0.639	0.026(251)	0.02(14)	0.032(548)	non tumor-specific	alt_5prime	yes
KIF1A_LS052	chr2:240782607|240783044:-	KIF1A	kinesin family member 1A	protein coding gene	no	ENST00000649096.1;ENST00000498729.8;ENST00000320389.12;ENST00000648364.1;ENST00000648680.1;ENST00000647731.1;ENST00000650130.1;ENST00000650053.1;ENST00000647885.1;ENST00000649306.1;ENST00000648129.1;ENST00000404283.9;ENST00000649064.1;ENST00000649381.1;ENST00000428768.2;ENST00000650542.1	18.894	17.969	5.999	0.306(2931)	0.152(107)	0.502(8732)	non tumor-specific	nAS	yes
UN_TSPOAP1_LS0051	chr17:58324627|58325479:+	TSPOAP1	TSPO associated protein 1	protein coding gene	no	.	1.615	0.365	0.000	0.006(58)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_SBF2_LS0023	chr11:9779942|9780379:-	SBF2	SET binding factor 2	protein coding gene	no	.	0.653	0.109	0.000	0.008(72)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
DOCK8_LS036	chr9:371566|372185:+	DOCK8	dedicator of cytokinesis 8	protein coding gene	no	ENST00000432829.6;ENST00000453981.5;ENST00000483757.5;ENST00000469391.5;ENST00000495184.5;ENST00000382329.1	15.306	8.397	4.467	0.708(6788)	0.889(624)	0.834(14494)	non tumor-specific	exon_skip	yes
COL2A1_LS043	chr12:47993862|47993994:-	COL2A1	collagen type II alpha 1 chain	protein coding gene	no	ENST00000380518.7;ENST00000337299.7	15.135	2.518	1.161	0.135(1294)	0.071(50)	0.106(1842)	non tumor-specific	nAS	yes
UN_CRLS1_LS0024	chr20:6009912|6031285:+	CRLS1	cardiolipin synthase 1	protein coding gene	no	.	3.523	0.165	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LINC02393_LS001	chr12:127881731|127893868:+	LINC02393	long intergenic non-protein coding RNA 2393	lncRNA gene	no	ENST00000614177.1	0.649	0.000	0.960	0.01(100)	0(0)	0.01(172)	non tumor-specific	nAS	yes
UN_TUBA3E_LS0005	chr2:130195227|130195767:-	TUBA3E	tubulin alpha 3e	protein coding gene	no	.	1.254	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM182B_LS0046	chr20:25805188|25859740:-	FAM182B	family with sequence similarity 182 member B	lncRNA gene	no	.	2.554	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
CEP112_LS006	chr17:65661814|65689129:-	CEP112	centrosomal protein 112	protein coding gene	no	ENST00000581734.5	0.004	0.003	0.651	0.307(2939)	0.44(309)	0.012(210)	non tumor-specific	exon_skip	yes
AC119674.1_LS004	chr1:56161167|56172556:-	AC119674.1	-	lncRNA gene	no	ENST00000641611.1	3.004	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	nAS	yes
AC020915.5_LS004	chr19:58229570|58243965:+	AC020915.5	-	protein coding gene	no	ENST00000637310.1	0.015	0.021	0.662	0.24(2295)	0.182(128)	0.037(636)	non tumor-specific	nAS	yes
UN_KIFC2_LS0024	chr8:144469539|144469613:+	KIFC2	kinesin family member C2	protein coding gene	no	.	1.039	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AIMP1_LS0009	chr4:106327638|106328076:+	AIMP1	aminoacyl tRNA synthetase complex interacting multifunctional protein 1	protein coding gene	yes	.	10.757	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_EPHA1_LS0040	chr7:143396095|143396385:-	EPHA1	EPH receptor A1	protein coding gene	yes	.	2.216	0.025	0.000	0.006(53)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
PAF1_LS004	chr19:39386799|39387159:-	PAF1	PAF1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000416728.3	0.451	0.412	1.224	0.151(1445)	0.229(161)	0.53(9208)	non tumor-specific	exon_skip	yes
ISLR2_LS012	chr15:74132009|74132747:+	ISLR2	immunoglobulin superfamily containing leucine rich repeat 2	protein coding gene	no	ENST00000565540.1	0.022	0.000	0.960	0.001(7)	0.001(1)	0(8)	non tumor-specific	nAS	yes
WDFY2_LS012	chr13:51751415|51755358:+	WDFY2	WD repeat and FYVE domain containing 2	protein coding gene	no	ENST00000298125.6;ENST00000298125.6	22.380	16.736	10.275	0.953(9128)	0.987(693)	0.971(16883)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BANCR_UP_LS0006	chr9:69396073|69398734:-	BANCR	BRAF-activated non-protein coding RNA	lncRNA gene	no	.	3.796	2.338	0.000	0.009(85)	0.107(75)	0(0)	non tumor-specific	nAS	no
NPIPB5_LS046	chr16:22527665|22527829:+	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	ENST00000621622.4	0.076	0.037	0.706	0.254(2435)	0.185(130)	0.027(464)	non tumor-specific	nAS	yes
GTDC1_LS028	chr2:144211579|144235676:-	GTDC1	glycosyltransferase like domain containing 1	protein coding gene	no	ENST00000392869.6;ENST00000409214.5;ENST00000392867.7;ENST00000409298.5;ENST00000344850.8;ENST00000415569.5;ENST00000491448.5;ENST00000417450.5;ENST00000484303.5;ENST00000429978.5;ENST00000467352.1;ENST00000392869.6;ENST00000409214.5;ENST00000392867.7;ENST00000409298.5;ENST00000344850.8;ENST00000415569.5;ENST00000491448.5;ENST00000417450.5;ENST00000484303.5;ENST00000429978.5;ENST00000467352.1	10.133	7.417	7.888	0.944(9049)	0.974(684)	0.97(16854)	non tumor-specific	alt_3prime;exon_skip	yes
DMTF1_LS019	chr7:87153039|87154390:+	DMTF1	cyclin D binding myb like transcription factor 1	protein coding gene	yes	.;.	0.133	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NDUFS6_LS0002	chr5:1801504|1802321:+	NDUFS6	NADH:ubiquinone oxidoreductase subunit S6	protein coding gene	no	.	46.577	14.913	0.000	0.058(559)	0.074(52)	0(0)	non tumor-specific	alt_5prime	no
SLC15A5_LS002	chr12:16194453|16216893:-	SLC15A5	solute carrier family 15 member 5	protein coding gene	no	ENST00000344941.3	7.848	0.000	0.944	0.001(8)	0(0)	0.058(1010)	non tumor-specific	nAS	yes
DYRK1A_LS035	chr21:37506354|37511911:+	DYRK1A	dual specificity tyrosine phosphorylation regulated kinase 1A	protein coding gene	no	ENST00000338785.8	0.591	0.404	0.693	0.046(444)	0.038(27)	0.141(2457)	non tumor-specific	alt_5prime;exon_skip	yes
BBS9_LS021	chr7:33346370|33349068:+	BBS9	Bardet-Biedl syndrome 9	protein coding gene	no	ENST00000433714.5	0.823	0.147	0.728	0.046(443)	0.046(32)	0.096(1675)	non tumor-specific	exon_skip	yes
CD163L1_LS027	chr12:7433694|7441154:-	CD163L1	CD163 molecule like 1	protein coding gene	no	ENST00000313599.7;ENST00000416109.2;ENST00000543276.1	2.049	1.946	1.147	0.187(1795)	0.315(221)	0.382(6648)	non tumor-specific	nAS	yes
RFX6_LS015	chr6:116923224|116924669:+	RFX6	regulatory factor X6	protein coding gene	no	ENST00000332958.2	5.980	1.376	0.995	0.047(452)	0.073(51)	0.1(1742)	non tumor-specific	nAS	yes
UN_STEAP3_LS0056	chr2:119254848|119257321:+	STEAP3	STEAP3 metalloreductase	protein coding gene	no	.	1.481	0.100	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
ST3GAL5_LS056	chr2:85863485|85888824:-	ST3GAL5	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein coding gene	no	ENST00000638572.1;ENST00000639311.1;ENST00000377332.8;ENST00000639119.1;ENST00000640315.1;ENST00000640425.1;ENST00000638678.1;ENST00000638885.1;ENST00000638542.1;ENST00000640024.1;ENST00000640222.1;ENST00000638855.1;ENST00000639305.1;ENST00000639608.1;ENST00000639541.1;ENST00000639945.1;ENST00000638956.1;ENST00000640572.1;ENST00000473122.6;ENST00000461892.6;ENST00000484728.6	3.001	1.957	4.718	0.826(7918)	0.907(637)	0.924(16060)	non tumor-specific	exon_skip	yes
UN_SLK_LS0020	chr10:104025736|104027818:+	SLK	STE20 like kinase	protein coding gene	no	.	1.541	0.072	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
MTUS1_LS013	chr8:17675252|17676009:-	MTUS1	microtubule associated scaffold protein 1	protein coding gene	yes	ENST00000521772.5	0.052	0.163	0.827	0.119(1141)	0.164(115)	0.151(2628)	non tumor-specific	alt_5prime;intron_retention	yes
UN_LDHAP4_UP_LS0003	chr9:14922403|14928839:-	LDHAP4	lactate dehydrogenase A pseudogene 4	pseudogene	no	.	1.659	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
GFPT1_LS008	chr2:69342249|69345904:-	GFPT1	glutamine--fructose-6-phosphate transaminase 1	protein coding gene	no	ENST00000357308.8;ENST00000361060.5	85.719	59.495	23.651	0.989(9474)	0.996(699)	0.975(16956)	non tumor-specific	exon_skip	yes
UN_ZNF865_LS0042	chr19:55614881|55615095:-	ZNF865	zinc finger protein 865	protein coding gene	no	.	1.205	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR4435-2HG_LS0049	chr2:111350761|111365561:-	MIR4435-2HG	MIR4435-2 host gene	lncRNA gene	no	.	0.353	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRAS_LS0012	chr3:138373334|138397324:+	MRAS	muscle RAS oncogene homolog	protein coding gene	yes	.	1.616	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC132807.2_LS001	chr3:18013234|18013655:+	AC132807.2	-	lncRNA gene	no	ENST00000616960.4	1.871	0.000	0.651	0.001(7)	0(0)	0.001(20)	non tumor-specific	nAS	yes
ELMO2P1_LS004	chr15:23120390|23121258:+	ELMO2P1	engulfment and cell motility 2 pseudogene 1	pseudogene	no	ENST00000611569.1	0.170	0.000	0.644	0(4)	0(0)	0.008(138)	non tumor-specific	nAS	yes
LINC00668_LS007	chr18:6926558|6928120:-	LINC00668	long intergenic non-protein coding RNA 668	lncRNA gene	no	ENST00000581725.5	1.853	0.341	1.005	0.021(199)	0.019(13)	0.031(535)	non tumor-specific	nAS	yes
ANKHD1_LS037	chr5:140528022|140528184:+	ANKHD1	ankyrin repeat and KH domain containing 1	protein coding gene	no	ENST00000297183.10;ENST00000360839.6;ENST00000431508.5;ENST00000433049.5;ENST00000435794.5;ENST00000432301.5	70.024	43.130	57.039	0.993(9512)	0.997(700)	0.979(17017)	non tumor-specific	nAS	yes
TMBIM7P_LS007	chr7:92426506|92428013:-	TMBIM7P	transmembrane BAX inhibitor motif containing 7, pseudogene	pseudogene	no	ENST00000641617.1;ENST00000641474.1	1.857	0.207	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	yes
NPIPA8_LS007	chr16:18324235|18324399:-	NPIPA8	nuclear pore complex interacting protein family member A8	protein coding gene	no	ENST00000525596.5;ENST00000541810.5	12.499	7.444	0.728	0.962(9220)	0.966(678)	0.212(3679)	non tumor-specific	nAS	yes
CACNA1I_LS013	chr22:39658303|39658931:+	CACNA1I	calcium voltage-gated channel subunit alpha1 I	protein coding gene	no	ENST00000407673.5;ENST00000401624.5;ENST00000404898.5;ENST00000402142.3	5.878	1.406	3.383	0.052(501)	0.08(56)	0.236(4101)	non tumor-specific	nAS	yes
UN_BACE1_LS0027	chr11:117297209|117315535:-	BACE1	beta-secretase 1	protein coding gene	no	.	2.826	0.244	0.000	0.024(227)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
KIF5A_LS013	chr12:57570162|57571321:+	KIF5A	kinesin family member 5A	protein coding gene	no	ENST00000455537.6;ENST00000286452.5	11.831	34.752	2.701	0.199(1904)	0.278(195)	0.7(12170)	non tumor-specific	nAS	yes
UN_VDAC1_LS0028	chr5:133993015|134004442:-	VDAC1	voltage dependent anion channel 1	protein coding gene	no	.	1.548	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
GTF2A2_LS017	chr15:59652326|59657124:-	GTF2A2	general transcription factor IIA subunit 2	protein coding gene	no	ENST00000396061.5;ENST00000396061.5	0.382	3.088	0.954	0.976(9354)	0.981(689)	0.496(8629)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ACTG1_LS0353	chr17:81511603|81512000:+	ACTG1	actin gamma 1	protein coding gene	no	.	44.363	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02328_LS0008	chr14:85934861|86031136:+	LINC02328	long intergenic non-protein coding RNA 2328	lncRNA gene	no	.	1.211	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
CIC_LS025	chr19:42293836|42293935:+	CIC	capicua transcriptional repressor	protein coding gene	yes	ENST00000160740.7;ENST00000575354.6;ENST00000576505.6;ENST00000575287.1	51.667	26.552	64.024	0.992(9506)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_HLA-DRB1_UP_LS0045	chr6:32666514|32763390:-	HLA-DRB1	major histocompatibility complex, class II, DR beta 1	protein coding gene	no	.	44.565	28.222	0.000	0.516(4946)	0.517(363)	0(0)	non tumor-specific	nAS	no
NEK6_LS005	chr9:124258085|124301936:+	NEK6	NIMA related kinase 6	protein coding gene	no	ENST00000320246.9;ENST00000320246.9	6.186	3.155	6.047	0.868(8321)	0.905(635)	0.948(16481)	non tumor-specific	alt_3prime;exon_skip	yes
COMT_LS021	chr22:19963371|19963566:+	COMT	catechol-O-methyltransferase	protein coding gene	no	ENST00000493893.1	0.390	0.230	0.919	0.867(8311)	0.887(623)	0.195(3384)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC123912.3_UP_LS0004	chr19:21596471|21597284:+	AC123912.3	-	pseudogene	no	.	3.191	1.007	0.000	0.024(230)	0.028(20)	0(0)	non tumor-specific	nAS	no
ILDR1_LS006	chr3:121994313|122005244:-	ILDR1	immunoglobulin like domain containing receptor 1	protein coding gene	no	ENST00000393631.5	0.088	0.038	0.592	0.087(836)	0.07(49)	0.004(75)	non tumor-specific	exon_skip	yes
UN_GOLIM4_LS0028	chr3:168040863|168041392:-	GOLIM4	golgi integral membrane protein 4	protein coding gene	no	.	11.286	4.153	0.000	0.014(134)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FIP1L1_LS008	chr4:53382335|53390521:+	FIP1L1	factor interacting with PAPOLA and CPSF1	protein coding gene	yes	ENST00000514543.5	0.095	0.042	0.628	0.288(2758)	0.261(183)	0.081(1413)	non tumor-specific	exon_skip	yes
PTPRD_LS005	chr9:8317942|8319831:-	PTPRD	protein tyrosine phosphatase receptor type D	protein coding gene	yes	ENST00000381196.8;ENST00000355233.9;ENST00000397617.7;ENST00000537002.5;ENST00000397611.7;ENST00000356435.9;ENST00000540109.5;ENST00000486161.5;ENST00000397606.7	12.472	9.083	5.269	0.567(5431)	0.815(572)	0.861(14970)	non tumor-specific	alt_3prime;exon_skip	yes
AL589740.1_LS012	chr6:97702364|97707687:+	AL589740.1	-	lncRNA gene	no	ENST00000433637.2;ENST00000634677.1	0.142	0.068	3.870	0.113(1083)	0.083(58)	0.174(3029)	non tumor-specific	nAS	yes
AP4E1_LS012	chr15:50934697|50941442:+	AP4E1	adaptor related protein complex 4 subunit epsilon 1	protein coding gene	no	ENST00000561441.5;ENST00000558439.5;ENST00000261842.9;ENST00000560508.1	3.143	2.012	2.711	0.61(5844)	0.789(554)	0.833(14471)	non tumor-specific	exon_skip	yes
ADAM28_LS011	chr8:24321289|24323834:+	ADAM28	ADAM metallopeptidase domain 28	protein coding gene	yes	ENST00000265769.8;ENST00000437154.6	8.187	6.542	1.687	0.571(5470)	0.642(451)	0.598(10391)	non tumor-specific	exon_skip;mutex_exons	yes
WDR83_LS013	chr19:12670821|12672463:+	WDR83	WD repeat domain 83	protein coding gene	no	ENST00000547797.1	0.098	0.048	0.677	0.194(1857)	0.158(111)	0.084(1459)	non tumor-specific	alt_3prime;exon_skip	yes
ROCK1_LS002	chr18:20953785|20954783:-	ROCK1	Rho associated coiled-coil containing protein kinase 1	protein coding gene	yes	ENST00000399799.2;ENST00000635540.1;ENST00000578051.1	38.302	25.602	29.108	0.983(9417)	0.994(698)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
HERC1_LS093	chr15:63775649|63833822:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000558532.1	0.405	0.319	0.922	0.393(3766)	0.564(396)	0.474(8246)	non tumor-specific	alt_5prime;exon_skip	yes
TTLL10_LS020	chr1:1196488|1196600:+	TTLL10	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000486379.1	0.402	0.000	0.654	0.001(14)	0(0)	0.011(183)	non tumor-specific	exon_skip;intron_retention	yes
UN_VRK3_LS0014	chr19:49982188|49992860:-	VRK3	VRK serine/threonine kinase 3	protein coding gene	no	.	2.246	0.366	0.000	0.009(89)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_IVD_LS0074	chr15:40427302|40435417:+	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	.	2.844	0.275	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
VSTM1_LS014	chr19:54055799|54058306:-	VSTM1	V-set and transmembrane domain containing 1	protein coding gene	no	ENST00000645936.1	9.591	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	nAS	yes
GABARAPL1_LS031	chr12:10220558|10221787:+	GABARAPL1	GABA type A receptor associated protein like 1	protein coding gene	no	ENST00000542722.5;ENST00000266458.9;ENST00000544284.5;ENST00000541453.1;ENST00000540424.5;ENST00000545887.1;ENST00000541960.5;ENST00000546017.5;ENST00000535576.5;ENST00000539170.5;ENST00000545290.1	83.306	94.964	199.447	0.951(9107)	0.966(678)	0.979(17020)	non tumor-specific	intron_retention	yes
ADAMTS9_LS032	chr3:64641993|64647940:-	ADAMTS9	ADAM metallopeptidase with thrombospondin type 1 motif 9	protein coding gene	yes	ENST00000498707.5;ENST00000295903.8;ENST00000482490.5;ENST00000475557.5	7.263	5.363	6.753	0.609(5839)	0.764(536)	0.847(14721)	non tumor-specific	alt_3prime	yes
NCAPH_LS023	chr2:96369500|96373292:+	NCAPH	non-SMC condensin I complex subunit H	protein coding gene	no	ENST00000240423.8;ENST00000427946.5;ENST00000455200.5;ENST00000435349.1	29.227	3.042	2.113	0.889(8521)	0.506(355)	0.727(12638)	non tumor-specific	alt_5prime	yes
UN_LMF1_LS0085	chr16:954666|968673:-	LMF1	lipase maturation factor 1	protein coding gene	no	.	7.489	0.057	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBSN_LS020	chr3:15091493|15095973:-	RBSN	rabenosyn, RAB effector	protein coding gene	no	ENST00000441057.5	1.040	0.765	1.127	0.42(4025)	0.544(382)	0.581(10100)	non tumor-specific	exon_skip	yes
CTTN_LS011	chr11:70409960|70414542:+	CTTN	cortactin	protein coding gene	yes	ENST00000346329.7;ENST00000301843.12;ENST00000376561.7;ENST00000415461.2	131.228	87.713	147.811	0.986(9445)	0.997(700)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
CFAP44_LS040	chr3:113400644|113401240:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	ENST00000393845.8;ENST00000488854.6;ENST00000295868.6	2.482	0.799	3.384	0.233(2229)	0.261(183)	0.874(15195)	non tumor-specific	alt_3prime	yes
EML3_LS029	chr11:62611347|62611425:-	EML3	EMAP like 3	protein coding gene	no	ENST00000394776.8;ENST00000278845.8;ENST00000494176.6;ENST00000466671.5	13.055	7.751	14.964	0.964(9232)	0.987(693)	0.977(16978)	non tumor-specific	alt_3prime;alt_5prime	yes
SLC35E1_LS001	chr19:16550470|16552050:-	SLC35E1	solute carrier family 35 member E1	protein coding gene	no	ENST00000593812.1	0.005	0.027	0.640	0.721(6907)	0.765(537)	0.03(523)	non tumor-specific	intron_retention	yes
DGLUCY_LS040	chr14:91167378|91173289:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000519994.5	0.118	0.005	0.935	0.033(317)	0.063(44)	0.424(7369)	non tumor-specific	exon_skip	yes
CRBN_LS010	chr3:3154831|3156219:-	CRBN	cereblon	protein coding gene	no	ENST00000639284.1;ENST00000424814.5;ENST00000231948.8;ENST00000432408.6;ENST00000482844.5	32.327	28.640	31.419	0.99(9485)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PDE6B_LS015	chr4:654154|654824:+	PDE6B	phosphodiesterase 6B	protein coding gene	no	ENST00000255622.10;ENST00000496514.5;ENST00000465426.5;ENST00000487902.5;ENST00000429163.6	3.371	0.364	5.938	0.122(1167)	0.1(70)	0.181(3151)	non tumor-specific	intron_retention	yes
SUGT1_LS022	chr13:52666919|52676230:+	SUGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein coding gene	no	ENST00000343788.10;ENST00000310528.8	133.627	68.348	68.288	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
AL356515.1_LS001	chr13:44684808|44715301:-	AL356515.1	-	lncRNA gene	no	ENST00000611081.1	0.267	0.032	0.690	0.011(104)	0.01(7)	0.047(816)	non tumor-specific	nAS	yes
SYNJ1_LS010	chr21:32641966|32645646:-	SYNJ1	synaptojanin 1	protein coding gene	no	ENST00000382491.7;ENST00000630077.2	4.218	2.708	4.963	0.764(7320)	0.896(629)	0.952(16540)	non tumor-specific	exon_skip	yes
UN_HPCAL1_LS0084	chr2:10427038|10427091:-	HPCAL1	hippocalcin like 1	protein coding gene	no	.	3.595	3.057	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HRASLS2_UP_LS0004	chr11:63564672|63564782:-	HRASLS2	phospholipase A and acyltransferase 2	protein coding gene	yes	.	1.505	0.345	0.000	0.017(167)	0.004(3)	0(0)	non tumor-specific	nAS	no
AJ009632.2_LS021	chr21:15567988|15571192:-	AJ009632.2	-	lncRNA gene	no	ENST00000635684.1	4.046	0.677	2.074	0.005(44)	0.004(3)	0.046(799)	non tumor-specific	nAS	yes
GPC2_LS011	chr7:100173997|100174685:-	GPC2	glypican 2	protein coding gene	no	ENST00000292377.3;ENST00000490629.5;ENST00000480087.5;ENST00000292377.3;ENST00000490629.5;ENST00000480087.5;ENST00000292377.3;ENST00000490629.5;ENST00000480087.5	5.462	0.542	2.452	0.61(5840)	0.188(132)	0.847(14717)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
THOC2_LS048	chrX:123644676|123644779:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5	21.941	11.723	13.604	0.875(8379)	0.934(656)	0.965(16782)	non tumor-specific	alt_5prime	yes
TPM3_LS008	chr1:154170469|154170649:-	TPM3	tropomyosin 3	protein coding gene	no	ENST00000368533.7;ENST00000368545.7;ENST00000469717.5;ENST00000330188.13;ENST00000341485.9;ENST00000341372.7;ENST00000328159.8;ENST00000509409.5;ENST00000271850.11;ENST00000312970.12;ENST00000513769.5;ENST00000302206.9;ENST00000368531.6;ENST00000323144.11;ENST00000368530.6;ENST00000504663.1;ENST00000509601.1	135.856	80.067	241.302	0.999(9571)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TNRC6C_LS014	chr17:78073094|78075136:+	TNRC6C	trinucleotide repeat containing adaptor 6C	protein coding gene	no	ENST00000636222.1;ENST00000588847.5;ENST00000588061.5;ENST00000301624.8;ENST00000335749.4;ENST00000591851.5;ENST00000587990.1	6.335	4.250	7.607	0.83(7955)	0.91(639)	0.964(16761)	non tumor-specific	nAS	yes
AP000781.1_LS001	chr11:57325697|57327743:+	AP000781.1	-	lncRNA gene	no	ENST00000534162.1	0.188	0.145	0.743	0.75(7190)	0.714(501)	0.262(4562)	non tumor-specific	nAS	yes
CACNA1B_LS040	chr9:138074066|138075819:+	CACNA1B	calcium voltage-gated channel subunit alpha1 B	protein coding gene	no	ENST00000277551.6;ENST00000277549.9;ENST00000371372.5;ENST00000371363.5;ENST00000371355.8;ENST00000371357.5	4.460	1.539	3.083	0.143(1367)	0.036(25)	0.302(5257)	non tumor-specific	exon_skip	yes
GLT1D1_LS006	chr12:128899287|128906907:+	GLT1D1	glycosyltransferase 1 domain containing 1	protein coding gene	no	ENST00000537468.1	1.715	0.802	1.219	0.004(37)	0.027(19)	0.193(3363)	non tumor-specific	exon_skip	yes
AC103808.3_LS001	chr18:76254434|76254760:-	AC103808.3	-	lncRNA gene	no	ENST00000579714.1	0.402	0.000	0.722	0.004(38)	0(0)	0.001(15)	non tumor-specific	nAS	yes
STAB1_LS015	chr3:52505781|52505883:+	STAB1	stabilin 1	protein coding gene	no	ENST00000321725.10;ENST00000481607.1	5.589	3.605	22.059	0.696(6672)	0.855(600)	0.93(16169)	non tumor-specific	nAS	yes
UN_SPATA31C1_LS0004	chr9:87918179|87919255:+	SPATA31C1	SPATA31 subfamily C member 1	pseudogene	no	.	1.646	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF827_LS0036	chr4:145849561|145885678:-	ZNF827	zinc finger protein 827	protein coding gene	no	.	1.599	0.195	0.000	0.013(120)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_CSNK1A1_LS0055	chr5:149550984|149551025:+	CSNK1A1	casein kinase 1 alpha 1	protein coding gene	yes	.	2.834	1.642	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	nAS	no
GPATCH11_LS008	chr2:37094195|37095437:+	GPATCH11	G-patch domain containing 11	protein coding gene	no	ENST00000409774.5;ENST00000281932.5	12.593	6.992	5.552	0.949(9093)	0.973(683)	0.947(16454)	non tumor-specific	nAS	yes
MEST_LS005	chr7:130487224|130495368:+	MEST	mesoderm specific transcript	protein coding gene	no	ENST00000433159.5	0.041	0.047	0.688	0.508(4865)	0.516(362)	0.019(331)	non tumor-specific	nAS	yes
DUSP18_LS006	chr22:30654437|30663013:-	DUSP18	dual specificity phosphatase 18	protein coding gene	no	ENST00000412865.1	0.321	0.232	0.816	0.136(1299)	0.165(116)	0.001(12)	non tumor-specific	nAS	yes
DEPDC5_LS039	chr22:31833980|31837094:+	DEPDC5	DEP domain containing 5, GATOR1 subcomplex subunit	protein coding gene	no	ENST00000645755.1;ENST00000462414.1	0.032	0.014	1.130	0.44(4215)	0.491(345)	0.583(10129)	non tumor-specific	alt_3prime;exon_skip	yes
DXO_LS005	chr6:31970378|31970606:-	DXO	decapping exoribonuclease	protein coding gene	no	.;.	6.169	1.337	0.000	0.014(138)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC133555.3_UP_LS0010	chr16:29505872|29511994:-	AC133555.3	-	pseudogene	no	.	1.362	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ITSN1_LS053	chr21:33829745|33856736:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000475422.5	0.019	0.011	0.659	0.309(2965)	0.392(275)	0.013(231)	non tumor-specific	nAS	yes
MVB12A_LS016	chr19:17420634|17420961:+	MVB12A	multivesicular body subunit 12A	protein coding gene	no	ENST00000528659.5	0.110	0.054	1.411	0.501(4796)	0.481(338)	0.687(11939)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ABHD2_LS0084	chr15:89200295|89200375:-	ABHD2	abhydrolase domain containing 2, acylglycerol lipase	protein coding gene	no	.	8.410	0.792	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FAM193A_LS0035	chr4:2648225|2648502:+	FAM193A	family with sequence similarity 193 member A	protein coding gene	no	.	2.011	0.192	0.000	0.01(98)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC092073.1_LS0092	chr19:34400974|34401588:-	AC092073.1	-	protein coding gene	no	.	2.506	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CAMSAP1_LS009	chr9:135819146|135820839:-	CAMSAP1	calmodulin regulated spectrin associated protein 1	protein coding gene	no	ENST00000389532.8;ENST00000312405.10;ENST00000483991.5;ENST00000409386.3	11.679	7.674	13.369	0.954(9140)	0.97(681)	0.972(16893)	non tumor-specific	exon_skip	yes
UN_AC123904.3_UP_LS0017	chr12:74976678|74977992:-	AC123904.3	-	pseudogene	no	.	1.299	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DMD_LS061	chrX:32386465|32389501:-	DMD	dystrophin	protein coding gene	yes	ENST00000619831.4;ENST00000378677.6;ENST00000620040.4;ENST00000357033.8	6.495	5.256	4.821	0.166(1587)	0.397(279)	0.777(13503)	non tumor-specific	nAS	yes
ITPK1_LS005	chr14:92958366|92962355:-	ITPK1	inositol-tetrakisphosphate 1-kinase	protein coding gene	no	ENST00000267615.10;ENST00000354313.7;ENST00000556603.6;ENST00000555495.5;ENST00000556954.5;ENST00000553695.5;ENST00000554999.5;ENST00000556185.5;ENST00000555553.5	101.317	84.073	66.384	0.991(9495)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
SLC44A3-AS1_LS019	chr1:94742414|94819956:-	SLC44A3-AS1	SLC44A3 antisense RNA 1	pseudogene	no	ENST00000442418.5	1.361	0.486	0.747	0.257(2466)	0.303(213)	0.083(1443)	non tumor-specific	nAS	yes
UN_WDR33_LS0021	chr2:127714021|127715799:-	WDR33	WD repeat domain 33	protein coding gene	no	.	1.616	0.044	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LGALS3BP_LS0156	chr17:78971666|78971862:+	LGALS3BP	galectin 3 binding protein	protein coding gene	no	.	4.749	0.493	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IL36B_UP_LS0001	chr2:113052986|113054184:-	IL36B	interleukin 36 beta	protein coding gene	no	.	4.642	5.410	0.000	0.018(173)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
COL3A1_LS015	chr2:188992940|188993361:+	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	ENST00000304636.7;ENST00000317840.9	444.607	248.434	89.624	0.957(9170)	0.99(695)	0.914(15888)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_SMG1_LS0043	chr16:18838459|18838551:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	.	2.847	0.837	0.000	0.005(47)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CGREF1_LS002	chr2:27099840|27102015:-	CGREF1	cell growth regulator with EF-hand domain 1	protein coding gene	no	.;.	3.379	0.467	0.000	0.005(51)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF433-AS1_LS002	chr19:11987823|12001774:+	ZNF433-AS1	ZNF433 and ZNF878 antisense RNA 1	lncRNA gene	no	ENST00000406892.6;ENST00000495324.5;ENST00000489336.5;ENST00000476474.5	10.199	4.939	8.819	0.886(8489)	0.923(648)	0.972(16889)	non tumor-specific	nAS	yes
UN_NMRK2_LS0004	chr19:3933820|3936575:+	NMRK2	nicotinamide riboside kinase 2	protein coding gene	no	.	32.609	2.179	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
ZNF180_LS007	chr19:44484435|44485036:-	ZNF180	zinc finger protein 180	protein coding gene	no	ENST00000586637.5	0.144	0.137	0.908	0.385(3687)	0.5(351)	0.441(7662)	non tumor-specific	exon_skip;mutex_exons	yes
CARD9_LS010	chr9:136366845|136367216:-	CARD9	caspase recruitment domain family member 9	protein coding gene	no	ENST00000481053.5;ENST00000460290.5;ENST00000371734.7;ENST00000371732.9;ENST00000485975.1;ENST00000489932.2	7.062	3.080	3.636	0.807(7729)	0.764(536)	0.878(15260)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
BX890604.2_LS043	chrX:3931782|3937652:-	BX890604.2	-	lncRNA gene	no	ENST00000381105.2	0.423	0.211	0.727	0.681(6520)	0.638(448)	0.001(16)	non tumor-specific	nAS	yes
IDE_LS003	chr10:92456431|92461191:-	IDE	insulin degrading enzyme	protein coding gene	no	ENST00000371581.9;ENST00000650060.1;ENST00000265986.10;ENST00000496903.5	41.705	26.201	21.222	0.994(9520)	0.997(700)	0.978(16994)	non tumor-specific	exon_skip	yes
UN_FLNA_LS0312	chrX:154352571|154353381:+	FLNA	filamin A	protein coding gene	yes	.	7.334	12.238	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
DGKZ_LS020	chr11:46368079|46369364:+	DGKZ	diacylglycerol kinase zeta	protein coding gene	no	ENST00000524984.5;ENST00000524984.5;ENST00000524984.5	0.048	0.173	0.897	0.151(1446)	0.232(163)	0.388(6736)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_WDR81_LS0014	chr17:1728626|1732325:+	WDR81	WD repeat domain 81	protein coding gene	no	.	1.474	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
SLAMF7_LS008	chr1:160748514|160752186:+	SLAMF7	SLAM family member 7	protein coding gene	no	ENST00000444090.6	0.077	0.086	0.958	0.298(2858)	0.311(218)	0.03(523)	non tumor-specific	exon_skip	yes
UN_BOK_LS0090	chr2:241572760|241573166:-	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	3.222	3.914	0.000	0.145(1392)	0.296(208)	0(0)	non tumor-specific	nAS	no
ERF_LS006	chr19:42250565|42254537:-	ERF	eukaryotic translation termination factor 1	protein coding gene	yes	ENST00000440177.6	0.209	0.248	0.741	0.831(7960)	0.885(621)	0.222(3857)	non tumor-specific	nAS	yes
UN_WWOX_LS0131	chr16:79188856|79211608:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	2.514	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRRM2_LS0313	chr16:2766904|2766962:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	13.865	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PARP1_LS023	chr1:226390624|226392199:-	PARP1	poly(ADP-ribose) polymerase 1	protein coding gene	yes	ENST00000366794.9;ENST00000469663.1	147.504	66.523	42.198	0.993(9513)	0.994(698)	0.979(17014)	non tumor-specific	alt_3prime	yes
UN_FUT6_LS0009	chr19:5831289|5831370:+	FUT6	fucosyltransferase 6	protein coding gene	no	.	2.864	0.392	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
SULT1A3_LS011	chr16:30203006|30203646:+	SULT1A3	sulfotransferase family 1A member 3	protein coding gene	no	ENST00000569485.5	0.425	0.281	2.469	0.474(4543)	0.42(295)	0.882(15328)	non tumor-specific	alt_3prime;intron_retention	yes
UN_HAUS8_LS0025	chr19:17073335|17075090:-	HAUS8	HAUS augmin like complex subunit 8	protein coding gene	no	.	1.330	0.118	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_AL136307.1_LS0003	chr6:5852246|5863242:+	AL136307.1	-	lncRNA gene	no	.	2.416	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BRD7_LS011	chr16:50320774|50321982:-	BRD7	bromodomain containing 7	protein coding gene	yes	ENST00000394688.7;ENST00000394688.7	36.170	19.751	62.825	0.974(9331)	0.977(686)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
JDP2_LS003	chr14:75428606|75437898:+	JDP2	Jun dimerization protein 2	protein coding gene	yes	ENST00000435893.6	0.631	0.571	1.197	0.375(3597)	0.422(296)	0.583(10142)	non tumor-specific	exon_skip	yes
UN_AC008703.1_LS0011	chr5:159488297|159511585:-	AC008703.1	-	lncRNA gene	no	.	4.767	0.689	0.000	0.01(97)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC244157.2_UP_LS0475	chr22:22901228|22910964:-	AC244157.2	-	pseudogene	no	.	22.290	16.263	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RPL3P9_UP_LS0004	chr8:79724217|79724537:-	RPL3P9	ribosomal protein L3 pseudogene 9	pseudogene	no	.	11.195	0.111	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
C3orf52_LS005	chr3:112102965|112119469:+	C3orf52	chromosome 3 open reading frame 52	protein coding gene	no	ENST00000480282.5	0.113	0.100	0.668	0.045(430)	0.081(57)	0.029(502)	non tumor-specific	exon_skip	yes
FBXO22_LS002	chr15:75904103|75913203:+	FBXO22	F-box protein 22	protein coding gene	no	ENST00000569022.1	0.805	0.785	2.221	0.906(8678)	0.946(664)	0.84(14601)	non tumor-specific	exon_skip	yes
UN_RFTN1_LS0045	chr3:16465218|16466643:+	RFTN1	raftlin, lipid raft linker 1	protein coding gene	no	.	4.070	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EXOC2_LS0008	chr6:487549|487986:+	EXOC2	exocyst complex component 2	protein coding gene	no	.	3.290	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDX27_LS0009	chr20:49225202|49226430:+	DDX27	DEAD-box helicase 27	protein coding gene	no	.	25.515	5.646	0.000	0.005(51)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_GAPDH_LS0117	chr12:6537680|6537796:-	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	577.409	62.622	0.000	0.07(672)	0.054(38)	0(0)	non tumor-specific	nAS	no
EDEM3_LS021	chr1:184717623|184719162:-	EDEM3	ER degradation enhancing alpha-mannosidase like protein 3	protein coding gene	no	ENST00000318130.12;ENST00000367512.7	18.160	12.538	7.927	0.856(8201)	0.964(677)	0.949(16502)	non tumor-specific	exon_skip	yes
UN_Z93930.2_LS0059	chr22:28844199|28846318:+	Z93930.2	-	lncRNA gene	no	.	0.801	0.376	0.000	0.017(160)	0.014(10)	0(0)	non tumor-specific	nAS	no
TBC1D5_LS023	chr3:17404961|17406418:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	ENST00000253692.11;ENST00000429383.8;ENST00000446818.6;ENST00000429924.6;ENST00000415814.6;ENST00000452492.6;ENST00000412981.5;ENST00000428355.5;ENST00000425944.5;ENST00000430169.5;ENST00000445294.5;ENST00000414349.5;ENST00000443499.6	3.262	2.515	7.654	0.872(8350)	0.957(672)	0.96(16690)	non tumor-specific	nAS	yes
FUT6_LS019	chr19:5832905|5838677:-	FUT6	fucosyltransferase 6	protein coding gene	no	.;.	0.796	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ATP9A_LS0010	chr20:51599140|51599335:+	ATP9A	ATPase phospholipid transporting 9A (putative)	protein coding gene	no	.	3.370	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SLC4A3_LS026	chr2:219633979|219634420:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	ENST00000358055.7;ENST00000373760.6;ENST00000273063.10;ENST00000425141.5;ENST00000317151.7;ENST00000416910.1	11.068	8.546	8.669	0.673(6447)	0.681(478)	0.913(15874)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GPALPP1_UP_LS0004	chr13:44718782|44747275:+	GPALPP1	GPALPP motifs containing 1	protein coding gene	no	.	1.968	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ULK4_LS0049	chr3:41717861|41789661:-	ULK4	unc-51 like kinase 4	protein coding gene	no	.	3.902	0.074	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_LRRC8E_LS0001	chr19:7888600|7893573:+	LRRC8E	leucine rich repeat containing 8 VRAC subunit E	protein coding gene	no	.	0.827	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GLI3_UP_LS0012	chr7:42386291|42388849:-	GLI3	GLI family zinc finger 3	protein coding gene	yes	.	2.102	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
RFTN1_LS021	chr3:16493877|16513442:-	RFTN1	raftlin, lipid raft linker 1	protein coding gene	no	ENST00000334133.8;ENST00000453536.5	14.433	12.186	19.325	0.904(8661)	0.949(666)	0.971(16885)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NBPF15_LS0001	chr1:144423256|144425517:-	NBPF15	NBPF member 15	protein coding gene	no	.	2.727	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PHYHD1_LS033	chr9:128940497|128941445:+	PHYHD1	phytanoyl-CoA dioxygenase domain containing 1	protein coding gene	no	ENST00000442837.5;ENST00000419872.1;ENST00000442837.5;ENST00000419872.1	0.702	0.703	5.956	0.694(6647)	0.934(656)	0.9(15637)	non tumor-specific	alt_5prime;exon_skip	yes
CARNS1_LS008	chr11:67416202|67418431:+	CARNS1	carnosine synthase 1	protein coding gene	no	.;.	1.891	0.049	0.000	0.001(6)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
VAX2_LS028	chr2:70964865|70964958:+	VAX2	ventral anterior homeobox 2	protein coding gene	no	ENST00000432367.6	78.688	41.146	3.172	0.462(4429)	0.563(395)	0.784(13620)	non tumor-specific	nAS	yes
CEP83_LS010	chr12:94333674|94335589:-	CEP83	centrosomal protein 83	protein coding gene	no	ENST00000546587.1	0.475	0.153	0.713	0.066(636)	0.038(27)	0.048(840)	non tumor-specific	alt_3prime;exon_skip	yes
SMARCA2_LS022	chr9:2058464|2060816:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000357248.8;ENST00000450198.6;ENST00000349721.7;ENST00000382194.6;ENST00000634760.1;ENST00000382203.5;ENST00000635030.1;ENST00000634403.1	39.864	46.372	35.402	0.952(9121)	0.987(693)	0.979(17009)	non tumor-specific	nAS	yes
AC010978.1_LS006	chr2:105856746|105857133:-	AC010978.1	-	lncRNA gene	no	ENST00000427050.6	0.026	0.001	0.671	0.004(35)	0.006(4)	0.004(62)	non tumor-specific	nAS	yes
UN_CFAP44_LS0016	chr3:113330668|113330798:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	.	1.390	0.226	0.000	0.014(134)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ATP5F1A_LS012	chr18:46089732|46089889:-	ATP5F1A	ATP synthase F1 subunit alpha	protein coding gene	no	ENST00000590665.5	0.596	0.995	2.442	0.942(9025)	0.979(687)	0.876(15227)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
TRPC4_LS015	chr13:37674367|37745937:-	TRPC4	transient receptor potential cation channel subfamily C member 4	protein coding gene	no	ENST00000488717.5	0.169	0.037	0.687	0.02(193)	0.056(39)	0.042(731)	non tumor-specific	exon_skip	yes
MUC19_LS108	chr12:40526326|40527096:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9;ENST00000474954.5	3.631	0.202	0.778	0.005(45)	0.001(1)	0.051(878)	non tumor-specific	nAS	yes
AL031767.1_LS001	chr6:21354601|21355102:-	AL031767.1	-	lncRNA gene	no	ENST00000426374.2	0.187	0.000	0.569	0.002(17)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_EIF5AL1_LS0013	chr10:79512949|79513632:-	EIF5AL1	eukaryotic translation initiation factor 5A like 1	protein coding gene	no	.	1.413	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ATPAF2_LS014	chr17:18021663|18021745:-	ATPAF2	ATP synthase mitochondrial F1 complex assembly factor 2	protein coding gene	no	ENST00000469327.5;ENST00000465337.2	0.096	0.024	1.548	0.492(4718)	0.4(281)	0.686(11921)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF474_LS001	chr5:122129683|122147875:+	ZNF474	zinc finger protein 474	protein coding gene	no	ENST00000505843.1	0.437	0.297	0.596	0.012(116)	0.026(18)	0.006(105)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LGR6_LS0005	chr1:202228806|202229884:-	LGR6	leucine rich repeat containing G protein-coupled receptor 6	protein coding gene	no	.	3.615	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
RBFOX1_LS018	chr16:7333088|7518147:+	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	ENST00000436368.6;ENST00000311745.9;ENST00000355637.8;ENST00000340209.8;ENST00000620507.4	0.446	3.373	16.479	0.038(367)	0.041(29)	0.14(2439)	non tumor-specific	nAS	yes
UN_SEPT2_LS0022	chr2:241350203|241351991:+	SEPT2	septin 6	protein coding gene	no	.	38.713	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TSPAN3_LS005	chr15:77054279|77056064:-	TSPAN3	tetraspanin 3	protein coding gene	no	ENST00000346495.6	6.851	10.488	0.803	0.325(3115)	0.325(228)	0.274(4757)	non tumor-specific	exon_skip	yes
WASL_LS009	chr7:123706826|123709089:-	WASL	WASP like actin nucleation promoting factor	protein coding gene	no	ENST00000223023.4	45.069	42.962	19.101	0.946(9064)	0.986(692)	0.963(16744)	non tumor-specific	nAS	yes
KDM2A_LS010	chr11:67181892|67207510:+	KDM2A	lysine demethylase 2A	protein coding gene	yes	ENST00000398645.6;ENST00000529006.6;ENST00000308783.9	13.984	8.242	22.965	0.851(8151)	0.926(650)	0.977(16981)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC246787.2_UP_LS1660	chr14:105872386|105876894:+	AC246787.2	-	lncRNA gene	no	.	3.423	0.000	0.000	0.005(49)	0(0)	0(0)	non tumor-specific	nAS	no
ZFY-AS1_LS003	chrY:3001923|3002313:-	ZFY-AS1	ZFY antisense RNA 1	lncRNA gene	no	ENST00000431145.1	0.336	0.112	0.789	0.031(298)	0.073(51)	0.116(2015)	non tumor-specific	nAS	yes
SGTA_LS003	chr19:2757782|2759257:-	SGTA	small glutamine rich tetratricopeptide repeat containing alpha	protein coding gene	no	ENST00000221566.6;ENST00000591984.1	179.210	94.044	97.381	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TRO_LS035	chrX:54927781|54928603:+	TRO	trophinin	protein coding gene	no	ENST00000420798.6;ENST00000173898.11;ENST00000319167.12;ENST00000622017.4;ENST00000445561.5;ENST00000375022.8;ENST00000399736.5;ENST00000375041.6;ENST00000492706.5;ENST00000475183.1;ENST00000469211.1	21.986	8.413	19.893	0.885(8477)	0.887(623)	0.949(16487)	non tumor-specific	nAS	yes
UN_ARSB_LS0010	chr5:78832691|78839356:-	ARSB	arylsulfatase B	protein coding gene	no	.	2.752	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TPI1_LS012	chr12:6870136|6870265:+	TPI1	triosephosphate isomerase 1	protein coding gene	no	ENST00000229270.8;ENST00000613953.4;ENST00000396705.9;ENST00000488464.6;ENST00000535434.5;ENST00000474253.1	2133.049	883.607	793.313	0.965(9248)	0.987(693)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PTPRA_LS0073	chr20:3035710|3035799:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	18.605	8.004	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
DLD_LS022	chr7:107915696|107916794:+	DLD	dihydrolipoamide dehydrogenase	protein coding gene	no	ENST00000205402.9;ENST00000415325.5;ENST00000417551.5;ENST00000440410.5;ENST00000437604.6	105.278	87.913	59.360	0.994(9526)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
NUMA1_LS066	chr11:72049535|72068105:-	NUMA1	nuclear mitotic apparatus protein 1	protein coding gene	no	.;.	2.015	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_FP236383.1_LS0317	chr21:8400318|8400418:+	FP236383.1	-	lncRNA gene	no	.	483.781	81.829	0.000	0.006(54)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RNU6-722P_UP_LS0003	chrX:48970225|48971741:-	RNU6-722P	RNA, U6 small nuclear 722, pseudogene	small non-coding RNA gene	no	.	0.981	0.050	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02489_UP_LS0002	chr11:46320938|46362093:-	LINC02489	long intergenic non-protein coding RNA 2489	lncRNA gene	no	.	3.705	0.884	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
HECTD4_LS075	chr12:112266982|112269704:-	HECTD4	HECT domain E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000550722.5;ENST00000377560.9;ENST00000311694.7;ENST00000550724.2	5.750	3.672	4.282	0.62(5937)	0.766(538)	0.913(15874)	non tumor-specific	nAS	yes
CC2D2A_LS046	chr4:15589679|15596144:+	CC2D2A	coiled-coil and C2 domain containing 2A	protein coding gene	no	ENST00000506643.4	0.556	0.172	0.690	0.065(622)	0.071(50)	0.105(1831)	non tumor-specific	alt_3prime;exon_skip	yes
FLYWCH1_LS018	chr16:2933582|2933716:+	FLYWCH1	FLYWCH-type zinc finger 1	protein coding gene	no	ENST00000253928.13;ENST00000416288.6;ENST00000573564.5;ENST00000344592.9	34.933	20.018	45.856	0.985(9439)	0.996(699)	0.979(17019)	non tumor-specific	exon_skip;intron_retention	yes
DIAPH2_LS018	chrX:96958148|96965093:+	DIAPH2	diaphanous related formin 2	protein coding gene	no	ENST00000355827.8;ENST00000373061.7;ENST00000373049.8;ENST00000324765.12;ENST00000373054.5	12.800	8.477	12.005	0.918(8791)	0.986(692)	0.95(16507)	non tumor-specific	nAS	yes
UN_HTT_LS0082	chr4:3223560|3223670:+	HTT	solute carrier family 6 member 4	protein coding gene	no	.	1.067	0.035	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SLC2A3_UP_LS0038	chr12:7966804|7970048:-	SLC2A3	solute carrier family 2 member 3	protein coding gene	no	.	1.352	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR6S1_UP_LS0005	chr14:20660423|20664128:-	OR6S1	olfactory receptor family 6 subfamily S member 1	protein coding gene	no	.	2.544	0.137	0.000	0.018(170)	0.001(1)	0(0)	non tumor-specific	nAS	no
CCDC39_LS017	chr3:180619365|180619811:-	CCDC39	coiled-coil domain containing 39	protein coding gene	no	ENST00000442201.6	3.536	2.860	1.467	0.04(383)	0.107(75)	0.521(9061)	non tumor-specific	exon_skip	yes
UN_AC007402.1_LS0013	chr2:51333665|51344191:-	AC007402.1	-	lncRNA gene	no	.	10.156	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STAG3L1_LS0049	chr7:75370024|75376758:-	STAG3L1	stromal antigen 3-like 1 (pseudogene)	pseudogene	no	.	2.167	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
C6_LS002	chr5:41149482|41149935:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	ENST00000337836.9;ENST00000263413.7	16.469	60.227	4.986	0.231(2212)	0.581(408)	0.712(12368)	non tumor-specific	alt_3prime	yes
UN_BVES-AS1_LS0004	chr6:105154491|105154610:+	BVES-AS1	BVES antisense RNA 1	lncRNA gene	no	.	1.611	0.246	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
WDR11_LS012	chr10:120858796|120860109:+	WDR11	WD repeat domain 11	protein coding gene	yes	ENST00000263461.10;ENST00000605202.5;ENST00000605069.5;ENST00000604585.5;ENST00000497136.6	24.418	22.020	22.380	0.928(8891)	0.98(688)	0.975(16950)	non tumor-specific	exon_skip	yes
UN_AHNAK_LS0735	chr11:62522629|62526512:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.841	1.059	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
TPP1_LS012	chr11:6616503|6616661:-	TPP1	tripeptidyl peptidase 1	protein coding gene	no	ENST00000299427.11;ENST00000533371.6;ENST00000644810.1;ENST00000642892.1;ENST00000644831.1;ENST00000645620.1;ENST00000647152.1;ENST00000643439.1;ENST00000644683.1;ENST00000644933.1;ENST00000647016.1;ENST00000647346.1;ENST00000647209.1	163.005	92.258	48.948	0.992(9500)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SLC25A3_LS0027	chr12:98604060|98605625:-	SLC25A3	solute carrier family 25 member 3	protein coding gene	no	.	3.476	0.599	0.000	0.005(46)	0.007(5)	0(0)	non tumor-specific	nAS	no
COL5A1_LS011	chr9:134731663|134732071:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	ENST00000371817.7;ENST00000618395.4;ENST00000469093.1	70.793	31.623	23.091	0.935(8963)	0.974(684)	0.906(15743)	non tumor-specific	nAS	yes
UN_ATG7_LS0003	chr3:11281102|11298686:+	ATG7	autophagy related 7	protein coding gene	no	.	1.520	0.459	0.000	0.02(187)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
UN_CAPN15_LS0095	chr16:551664|551831:+	CAPN15	calpain 15	protein coding gene	no	.	4.601	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	intron_retention	no
SLC44A5_LS029	chr1:75398421|75541435:-	SLC44A5	solute carrier family 44 member 5	protein coding gene	no	ENST00000469525.1	0.061	0.000	0.719	0(1)	0(0)	0(4)	non tumor-specific	nAS	yes
UN_NCOR2_LS0181	chr12:124341983|124342049:+	NCOR2	nuclear receptor corepressor 2	protein coding gene	no	.	1.024	0.054	0.000	0.009(91)	0.001(1)	0(0)	non tumor-specific	nAS	no
PKD2L1_LS010	chr10:100294655|100294942:-	PKD2L1	polycystin 2 like 1, transient receptor potential cation channel	protein coding gene	no	ENST00000318222.3;ENST00000528248.1	3.568	0.633	1.076	0.028(265)	0.031(22)	0.135(2346)	non tumor-specific	alt_5prime	yes
UN_GATD1_LS0027	chr11:767932|769403:-	GATD1	glutamine amidotransferase like class 1 domain containing 1	protein coding gene	no	.	7.441	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRPF8_UP_LS0017	chr17:1689524|1689701:-	PRPF8	pre-mRNA processing factor 8	protein coding gene	no	.	6.019	0.807	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_UBE2F-SCLY_LS0038	chr2:238081836|238081996:+	UBE2F-SCLY	UBE2F-SCLY readthrough (NMD candidate)	protein coding gene	no	.	1.947	0.706	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYADM_LS0100	chr19:53874589|53874626:-	MYADM	myeloid associated differentiation marker	protein coding gene	no	.	14.003	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CDCA7L_LS011	chr7:21911754|21945781:-	CDCA7L	cell division cycle associated 7 like	protein coding gene	no	ENST00000457951.5	0.032	0.054	0.617	0.597(5723)	0.621(436)	0.006(110)	non tumor-specific	exon_skip	yes
CEP290_LS038	chr12:88114562|88115098:-	CEP290	centrosomal protein 290	protein coding gene	no	ENST00000309041.11;ENST00000552810.5;ENST00000604024.5;ENST00000397838.7	3.868	2.392	2.490	0.614(5878)	0.67(470)	0.792(13766)	non tumor-specific	alt_3prime;exon_skip	yes
SPATS2L_LS001	chr2:200306160|200329431:+	SPATS2L	spermatogenesis associated serine rich 2 like	protein coding gene	no	ENST00000358677.9	0.030	0.155	0.697	0.05(475)	0.046(32)	0.14(2431)	non tumor-specific	alt_5prime;exon_skip	yes
PDIA3_LS008	chr15:43756766|43761424:+	PDIA3	protein disulfide isomerase family A member 3	protein coding gene	no	ENST00000300289.9;ENST00000434494.5	638.575	330.752	212.627	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CD48_LS001	chr1:160679131|160681202:-	CD48	CD48 molecule	protein coding gene	no	ENST00000368046.7	56.028	22.463	5.584	0.961(9211)	0.989(694)	0.883(15351)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FAHD2B_LS0005	chr2:97085918|97086139:-	FAHD2B	fumarylacetoacetate hydrolase domain containing 2B	protein coding gene	no	.	3.907	0.161	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
VSIG10L2_LS010	chr11:125954211|125955615:+	VSIG10L2	V-set and immunoglobulin domain containing 10 like 2	protein coding gene	no	ENST00000640497.1	0.581	0.155	0.708	0.018(172)	0.04(28)	0.026(449)	non tumor-specific	nAS	yes
SDK2_LS030	chr17:73414759|73415811:-	SDK2	sidekick cell adhesion molecule 2	protein coding gene	no	ENST00000392650.7;ENST00000479356.1	5.306	1.578	1.040	0.284(2718)	0.349(245)	0.384(6681)	non tumor-specific	nAS	yes
OGT_LS031	chrX:71568116|71573620:+	OGT	O-linked N-acetylglucosamine (GlcNAc) transferase	protein coding gene	no	ENST00000373719.7;ENST00000488174.5;ENST00000373701.7	140.111	58.374	267.875	0.996(9541)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_TMEM185B_UP_LS0033	chr2:120450823|120452453:-	TMEM185B	transmembrane protein 185B	protein coding gene	no	.	3.077	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02328_LS0004	chr14:85934861|85978970:+	LINC02328	long intergenic non-protein coding RNA 2328	lncRNA gene	no	.	1.708	0.131	0.000	0.02(189)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RHBDD1_LS0040	chr2:226980183|226980319:-	RHBDD1	rhomboid domain containing 1	protein coding gene	no	.	2.721	0.979	0.000	0.007(69)	0.07(49)	0(0)	non tumor-specific	nAS	no
UN_SLC25A22_LS0004	chr11:790840|790891:-	SLC25A22	solute carrier family 25 member 22	protein coding gene	no	.	11.041	0.320	0.000	0.022(208)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_PPCDC_LS0003	chr15:75023626|75028272:+	PPCDC	phosphopantothenoylcysteine decarboxylase	protein coding gene	no	.	0.526	0.140	0.000	0.008(81)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL138878.1_UP_LS0025	chr6:7447084|7452565:+	AL138878.1	-	pseudogene	no	.	2.857	0.236	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DHX16_LS0011	chr6:30662431|30662627:-	DHX16	DEAH-box helicase 16	protein coding gene	no	.	7.381	2.783	0.000	0.09(859)	0.061(43)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC007846.2_LS0040	chr17:6080721|6080752:-	AC007846.2	-	protein coding gene	no	.	1.629	0.600	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC025271.4_UP_LS0004	chr15:57550792|57551784:+	AC025271.4	-	lncRNA gene	no	.	2.112	0.098	0.000	0.006(53)	0.007(5)	0(0)	non tumor-specific	nAS	no
WDR26_LS004	chr1:224394013|224398097:-	WDR26	WD repeat domain 26	protein coding gene	no	ENST00000414423.7;ENST00000480676.2;ENST00000486652.5	84.682	46.210	75.400	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MTERF4_LS0002	chr2:241090044|241099396:-	MTERF4	mitochondrial transcription termination factor 4	protein coding gene	no	.	4.886	0.589	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_C6orf48_UP_LS0461	chr6:31817463|31829483:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	189.878	26.027	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS0546	chr16:16350428|16393736:-	RF00019	-	small non-coding RNA gene	no	.	5.744	0.195	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	nAS	no
UCHL1_LS007	chr4:41257020|41257115:+	UCHL1	ubiquitin C-terminal hydrolase L1	protein coding gene	yes	ENST00000472501.5	1.060	0.473	0.907	0.081(775)	0.031(22)	0.081(1413)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC02353_UP_LS0015	chr4:32158081|32225024:+	LINC02353	long intergenic non-protein coding RNA 2353	lncRNA gene	no	.	11.447	0.555	0.000	0.035(340)	0.007(5)	0(0)	non tumor-specific	nAS	no
PRKD3_LS001	chr2:37253350|37254204:-	PRKD3	protein kinase D3	protein coding gene	no	ENST00000379066.5;ENST00000234179.6	37.018	23.127	27.642	0.98(9385)	0.99(695)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AL669831.3_LS0632	chr1:633602|633980:-	AL669831.3	-	pseudogene	no	.	0.767	0.077	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRP1B_LS014	chr2:140324066|140325762:-	LRP1B	LDL receptor related protein 1B	protein coding gene	yes	ENST00000389484.7;ENST00000437977.5	4.520	1.789	2.471	0.116(1109)	0.182(128)	0.384(6675)	non tumor-specific	nAS	yes
UN_C7orf55-LUC7L2_LS0024	chr7:139360243|139360274:+	C7orf55-LUC7L2	FMC1-LUC7L2 readthrough	protein coding gene	no	.	3.619	0.145	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RXYLT1_LS0006	chr12:63780523|63781019:+	RXYLT1	ribitol xylosyltransferase 1	protein coding gene	no	.	1.292	0.220	0.000	0.005(51)	0.009(6)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
RERGL_LS005	chr12:18088956|18089229:-	RERGL	RERG like	protein coding gene	no	ENST00000229002.6	0.538	0.547	2.893	0.119(1144)	0.566(397)	0.662(11504)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ORC6_LS0013	chr16:46697854|46697990:-	ORC6	origin recognition complex subunit 6	protein coding gene	no	.	1.131	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GALNT17_LS011	chr7:71670109|71677211:+	GALNT17	polypeptide N-acetylgalactosaminyltransferase like 6	protein coding gene	no	ENST00000333538.9;ENST00000498380.6;ENST00000467723.1;ENST00000618959.1	26.033	25.738	15.520	0.472(4519)	0.846(594)	0.882(15330)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HEPH_LS0027	chrX:66208246|66251290:+	HEPH	hephaestin	protein coding gene	no	.	3.317	2.132	0.000	0.006(58)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
AC078860.1_LS002	chr12:71583562|71583729:-	AC078860.1	-	lncRNA gene	no	ENST00000546601.1	0.534	0.021	0.718	0.031(301)	0.006(4)	0.129(2248)	non tumor-specific	nAS	yes
NOP2_LS012	chr12:6563514|6563614:-	NOP2	NOP2 nucleolar protein	protein coding gene	no	ENST00000537442.5;ENST00000382421.7;ENST00000545200.5;ENST00000399466.6;ENST00000322166.9;ENST00000541778.5;ENST00000542944.5;ENST00000542867.5	27.193	10.733	30.275	0.99(9486)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;intron_retention	yes
UN_SLC29A1_UP_LS0003	chr6:44210565|44217450:+	SLC29A1	solute carrier family 29 member 1 (Augustine blood group)	protein coding gene	no	.	3.006	0.262	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_E2F3_LS0080	chr6:20483001|20488113:+	E2F3	E2F transcription factor 3	protein coding gene	yes	.	1.558	0.351	0.000	0.015(143)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ANKDD1A_LS0004	chr15:64933194|64934136:+	ANKDD1A	ankyrin repeat and death domain containing 1A	protein coding gene	no	.	1.587	0.914	0.000	0.012(119)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
NDEL1_LS004	chr17:8413269|8444260:+	NDEL1	nudE neurodevelopment protein 1 like 1	protein coding gene	no	ENST00000582812.5;ENST00000580237.5;ENST00000582812.5;ENST00000580237.5	0.017	0.047	3.168	0.465(4457)	0.584(410)	0.245(4250)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CALM1_LS0022	chr14:90405230|90405327:-	CALM1	calmodulin 1	protein coding gene	no	.	8.783	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
CHP2_LS004	chr16:23756193|23756388:+	CHP2	calcineurin like EF-hand protein 2	protein coding gene	no	ENST00000300113.2	10.220	62.339	2.198	0.262(2506)	0.343(241)	0.409(7117)	non tumor-specific	nAS	yes
UN_TCAF2_LS0017	chr7:143624398|143707456:+	TCAF2	TRPM8 channel associated factor 2	protein coding gene	no	.	1.127	0.401	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
CABP4_LS010	chr11:67455789|67456106:+	CABP4	calcium binding protein 4	protein coding gene	no	ENST00000438189.6	0.497	0.326	0.744	0.034(328)	0.026(18)	0.131(2278)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LINC01929_LS002	chr18:55117083|55119496:-	LINC01929	long intergenic non-protein coding RNA 1929	lncRNA gene	no	ENST00000592405.1	0.551	0.121	0.750	0.222(2127)	0.061(43)	0.092(1603)	non tumor-specific	nAS	yes
AC004832.1_LS007	chr22:30483839|30491878:+	AC004832.1	-	lncRNA gene	no	ENST00000610156.1	0.109	0.018	0.728	0.003(31)	0.016(11)	0.001(22)	non tumor-specific	nAS	yes
UN_SULT1C3_LS0004	chr2:108259146|108265239:+	SULT1C3	sulfotransferase family 1C member 3	protein coding gene	no	.	4.213	0.792	0.000	0.003(31)	0.021(15)	0(0)	non tumor-specific	nAS	no
SRSF11_LS021	chr1:70232377|70234696:+	SRSF11	serine and arginine rich splicing factor 11	protein coding gene	no	ENST00000370951.5;ENST00000370950.7;ENST00000475204.5;ENST00000395136.6;ENST00000486667.5;ENST00000481648.5;ENST00000484162.5;ENST00000370949.1	92.837	54.147	188.974	0.99(9484)	0.994(698)	0.979(17021)	non tumor-specific	alt_5prime;mutex_exons	yes
UN_PRSS2_LS0010	chr7:142762910|142773363:-	PRSS2	serine protease 2	protein coding gene	no	.	21.935	7.788	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
GOLGA4_LS020	chr3:37289289|37294979:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000617480.4	0.477	0.168	0.605	0.041(390)	0.041(29)	0.043(743)	non tumor-specific	nAS	yes
UN_ABR_LS0094	chr17:1070008|1072614:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	4.868	0.534	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_AL132801.1_LS0002	chr14:102770455|102771243:-	AL132801.1	-	lncRNA gene	no	.	2.393	1.048	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
REV3L_LS010	chr6:111315381|111322569:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	ENST00000434009.5;ENST00000368802.7;ENST00000368805.5;ENST00000422377.5;ENST00000435970.5;ENST00000358835.7	18.816	15.233	18.646	0.934(8949)	0.97(681)	0.971(16886)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TBKBP1_LS0001	chr17:47694103|47696079:+	TBKBP1	TBK1 binding protein 1	protein coding gene	no	.	1.749	0.859	0.000	0.104(995)	0.114(80)	0(0)	non tumor-specific	alt_5prime	no
UN_ADNP-AS1_LS0004	chr20:50931449|50933744:+	ADNP-AS1	ADNP antisense RNA 1	lncRNA gene	no	.	2.433	0.546	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
NDUFS8_LS016	chr11:68031710|68032152:+	NDUFS8	NADH:ubiquinone oxidoreductase core subunit S8	protein coding gene	no	ENST00000453471.6	0.043	0.000	0.626	0.011(102)	0.004(3)	0.074(1286)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL049765.1_UP_LS0010	chr20:52751326|52789352:-	AL049765.1	-	lncRNA gene	no	.	7.975	0.816	0.000	0.003(30)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SOCS3_LS0054	chr17:78357774|78357835:+	SOCS3	suppressor of cytokine signaling 3	protein coding gene	yes	.	8.794	3.354	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
PI4KA_LS057	chr22:20799276|20799671:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000485963.5;ENST00000485950.1	38.138	38.308	27.826	0.975(9340)	0.99(695)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
BAP1_LS016	chr3:52406322|52406829:-	BAP1	ring finger protein 2	protein coding gene	yes	ENST00000296288.9;ENST00000296288.9	1.139	1.298	2.566	0.927(8882)	0.959(673)	0.912(15851)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_CMPK1_LS0006	chr1:47334451|47368469:+	CMPK1	cytidine/uridine monophosphate kinase 1	protein coding gene	no	.	1.258	0.432	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_LRRC39_UP_LS0003	chr1:100183127|100196214:-	LRRC39	leucine rich repeat containing 39	protein coding gene	no	.	1.814	0.183	0.000	0.008(76)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_C6orf223_LS0033	chr6:44002594|44002681:+	C6orf223	chromosome 6 open reading frame 223	protein coding gene	no	.	1.645	0.415	0.000	0.033(313)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_ALPL_LS0043	chr1:21575177|21575733:+	ALPL	alkaline phosphatase, biomineralization associated	protein coding gene	yes	.	1.343	0.202	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHD9_LS0066	chr16:53141274|53155926:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	5.859	0.432	0.000	0.021(205)	0.024(17)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_FNDC1_LS0013	chr6:159200082|159214945:+	FNDC1	fibronectin type III domain containing 1	protein coding gene	no	.	1.480	0.361	0.000	0.065(624)	0.027(19)	0(0)	non tumor-specific	exon_skip	no
UN_RNF112_UP_LS0006	chr17:19393976|19395797:+	RNF112	ring finger protein 112	protein coding gene	no	.	2.229	0.315	0.000	0.006(61)	0.009(6)	0(0)	non tumor-specific	nAS	no
SENP2_LS007	chr3:185598497|185598992:+	SENP2	SUMO specific peptidase 2	protein coding gene	no	.;.	1.102	0.039	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
MBD4_LS012	chr3:129434133|129436443:-	MBD4	methyl-CpG binding domain 4, DNA glycosylase	protein coding gene	yes	.;.	7.066	0.980	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZFP36L1_LS0003	chr14:68787758|68788005:+	ZFP36L1	ZFP36 ring finger protein like 1	protein coding gene	no	.	2.029	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DLEU7_LS0013	chr13:50719710|50757763:+	DLEU7	deleted in lymphocytic leukemia 7	protein coding gene	no	.	1.766	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
COL21A1_LS020	chr6:56101525|56124062:-	COL21A1	collagen type XXI alpha 1 chain	protein coding gene	no	ENST00000488912.5;ENST00000244728.9;ENST00000370819.5;ENST00000535941.5	5.424	3.676	3.880	0.366(3506)	0.57(400)	0.752(13073)	non tumor-specific	exon_skip	yes
UN_IQGAP1_LS0025	chr15:90486107|90486954:+	IQGAP1	IQ motif containing GTPase activating protein 1	protein coding gene	no	.	59.911	21.222	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_LACTB2_LS0002	chr8:70651894|70652612:+	LACTB2	lactamase beta 2	protein coding gene	no	.	1.633	0.084	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
FSIP1_LS010	chr15:39739789|39741805:-	FSIP1	fibrous sheath interacting protein 1	protein coding gene	no	ENST00000350221.3;ENST00000559692.1	1.725	1.023	0.894	0.132(1268)	0.245(172)	0.378(6578)	non tumor-specific	exon_skip	yes
UN_TSPAN14_LS0087	chr10:80492633|80504728:+	TSPAN14	tetraspanin 14	protein coding gene	no	.	1.506	0.170	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
MSH3_LS012	chr5:80728965|80741464:+	MSH3	mutS homolog 3	protein coding gene	no	ENST00000265081.6;ENST00000512258.1	12.962	10.155	6.306	0.928(8889)	0.983(690)	0.963(16742)	non tumor-specific	exon_skip	yes
UN_ATN1_LS0035	chr12:6935751|6935779:-	ATN1	atrophin 1	protein coding gene	no	.	2.889	0.589	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ERCC5_LS0042	chr13:102854374|102856057:+	ERCC5	ERCC excision repair 5, endonuclease	protein coding gene	no	.	4.360	0.771	0.000	0.005(52)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RIMS2_LS0043	chr8:104014615|104018209:+	RIMS2	regulating synaptic membrane exocytosis 2	protein coding gene	no	.	1.536	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_TMX2-CTNND1_LS0056	chr11:57741726|57741820:-	TMX2-CTNND1	TMX2-CTNND1 readthrough (NMD candidate)	protein coding gene	no	.	1.694	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
GLYATL1P2_LS003	chr11:58892343|58892662:+	GLYATL1P2	glycine-N-acyltransferase like 1 pseudogene 2	pseudogene	no	ENST00000588046.1	0.089	0.000	0.588	0(2)	0(0)	0.003(45)	non tumor-specific	nAS	yes
UN_MACC1_LS0070	chr7:20208130|20216521:+	MACC1	MET transcriptional regulator MACC1	protein coding gene	yes	.	6.755	1.208	0.000	0.003(30)	0.02(14)	0(0)	non tumor-specific	nAS	no
MARK3_LS013	chr14:103429373|103448919:+	MARK3	microtubule affinity regulating kinase 3	protein coding gene	no	ENST00000561164.1	0.023	0.027	0.661	0.078(750)	0.067(47)	0.091(1581)	non tumor-specific	exon_skip;mutex_exons	yes
TTL_LS013	chr2:112520425|112528681:+	TTL	tubulin tyrosine ligase	protein coding gene	no	ENST00000233336.6;ENST00000233336.6	10.729	5.824	9.702	0.952(9117)	0.957(672)	0.966(16799)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DDX23_LS005	chr12:48832186|48832451:-	DDX23	DEAD-box helicase 23	protein coding gene	no	ENST00000547842.1	0.107	0.059	0.750	0.929(8899)	0.927(651)	0.34(5912)	non tumor-specific	alt_5prime	yes
DPY19L2P2_LS028	chr7:103271869|103275540:-	DPY19L2P2	DPY19L2 pseudogene 2	pseudogene	no	ENST00000435536.5	0.401	0.095	0.671	0.032(304)	0.006(4)	0.053(918)	non tumor-specific	nAS	yes
MCF2_LS023	chrX:139626307|139626623:-	MCF2	MCF.2 cell line derived transforming sequence	protein coding gene	yes	ENST00000520602.6;ENST00000370576.8;ENST00000536274.5;ENST00000414978.5;ENST00000519895.5;ENST00000370573.8;ENST00000338585.6	4.266	1.524	1.449	0.061(583)	0.098(69)	0.339(5893)	non tumor-specific	nAS	yes
POC5_LS006	chr5:75690562|75692396:-	POC5	POC5 centriolar protein	protein coding gene	no	ENST00000428202.6;ENST00000514838.6;ENST00000510798.5;ENST00000446329.6;ENST00000503835.5	22.006	9.048	10.141	0.968(9275)	0.964(677)	0.975(16955)	non tumor-specific	exon_skip	yes
UN_PIP4K2C_LS0018	chr12:57601636|57602971:+	PIP4K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	protein coding gene	no	.	5.931	0.770	0.000	0.009(82)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
COL3A1_LS023	chr2:188995790|188996125:+	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	ENST00000304636.7;ENST00000317840.9	664.502	332.866	113.160	0.959(9186)	0.99(695)	0.923(16041)	non tumor-specific	exon_skip	yes
CYP2D6_LS003	chr22:42127620|42128174:-	CYP2D6	cytochrome P450 family 2 subfamily D member 6	protein coding gene	no	.;.	4.735	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
HEATR5B_LS034	chr2:37077019|37079120:-	HEATR5B	HEAT repeat containing 5B	protein coding gene	no	ENST00000233099.5	8.142	5.215	4.724	0.756(7245)	0.887(623)	0.921(16014)	non tumor-specific	exon_skip	yes
TSC1_LS007	chr9:132901699|132902605:-	TSC1	TSC complex subunit 1	protein coding gene	yes	ENST00000643625.1;ENST00000298552.8;ENST00000545250.5;ENST00000440111.6;ENST00000644184.1;ENST00000642627.1;ENST00000646625.1;ENST00000644097.1;ENST00000644882.1;ENST00000647534.1;ENST00000643875.1;ENST00000647262.1;ENST00000645901.1;ENST00000642811.1;ENST00000647279.1;ENST00000642617.1;ENST00000643583.1;ENST00000644319.1;ENST00000644255.1;ENST00000646391.1;ENST00000643072.1;ENST00000642261.1;ENST00000643275.1;ENST00000647506.1	8.066	4.822	19.350	0.949(9090)	0.953(669)	0.978(16996)	non tumor-specific	nAS	yes
UN_PDIA3_LS0010	chr15:43746545|43746611:-	PDIA3	protein disulfide isomerase family A member 3	protein coding gene	no	.	9.936	1.051	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCDC150_LS0019	chr2:196729685|196729793:+	CCDC150	coiled-coil domain containing 150	protein coding gene	no	.	2.586	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
PMS2P6_LS005	chr7:73100706|73105293:+	PMS2P6	PMS1 homolog 2, mismatch repair system component pseudogene 6	pseudogene	no	ENST00000333674.5	2.044	0.907	0.720	0.866(8296)	0.886(622)	0.05(873)	non tumor-specific	nAS	yes
UN_TMEM182_LS0014	chr2:102784084|102797863:+	TMEM182	transmembrane protein 182	protein coding gene	no	.	0.836	0.039	0.000	0.007(65)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PDCD6IP_LS002	chr3:33798937|33812072:+	PDCD6IP	programmed cell death 6 interacting protein	protein coding gene	no	ENST00000307296.7;ENST00000457054.6;ENST00000648706.1;ENST00000413073.1;ENST00000477798.5	23.849	25.728	36.567	0.962(9220)	0.983(690)	0.978(16995)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FBXO9_LS0022	chr6:53082618|53084689:+	FBXO9	F-box protein 9	protein coding gene	no	.	3.443	0.053	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_HNRNPA3P6_LS0045	chr3:75215330|75215412:+	HNRNPA3P6	heterogeneous nuclear ribonucleoprotein A3 pseudogene 6	pseudogene	no	.	8.200	0.783	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EIF6_LS0007	chr20:35279146|35280762:+	EIF6	eukaryotic translation initiation factor 6	protein coding gene	no	.	0.534	0.216	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
CACNA2D2_LS005	chr3:50365688|50365810:-	CACNA2D2	calcium voltage-gated channel auxiliary subunit alpha2delta 2	protein coding gene	no	ENST00000423994.6;ENST00000429770.5;ENST00000266039.7;ENST00000360963.7;ENST00000424201.6;ENST00000479441.1	53.649	15.365	4.089	0.392(3760)	0.684(480)	0.871(15146)	non tumor-specific	intron_retention	yes
CENPX_LS013	chr17:82019909|82022826:-	CENPX	centromere protein X	protein coding gene	no	ENST00000584600.5;ENST00000580435.5;ENST00000306704.10;ENST00000392359.7;ENST00000584347.1;ENST00000585091.1;ENST00000584600.5;ENST00000580435.5;ENST00000306704.10;ENST00000392359.7;ENST00000584347.1;ENST00000585091.1	30.637	17.045	61.253	0.966(9255)	0.977(686)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
HMCN1_LS086	chr1:186130100|186130507:+	HMCN1	hemicentin 1	protein coding gene	no	ENST00000271588.8	5.340	2.976	2.854	0.417(3991)	0.618(434)	0.691(12007)	non tumor-specific	nAS	yes
OMA1_LS007	chr1:58506209|58527261:-	OMA1	OMA1 zinc metallopeptidase	protein coding gene	no	ENST00000467509.5;ENST00000421528.6;ENST00000371226.7	19.795	14.210	23.536	0.99(9487)	0.996(699)	0.979(17014)	non tumor-specific	nAS	yes
UN_PHLPP2_LS0027	chr16:71699761|71708201:+	PHLPP2	PH domain and leucine rich repeat protein phosphatase 2	protein coding gene	yes	.	5.041	0.331	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MIR4477A_UP_LS0013	chr9:41230689|41231779:+	MIR4477A	microRNA 4477a	small non-coding RNA gene	no	.	1.467	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
EDA2R_LS009	chrX:66599866|66602633:-	EDA2R	ectodysplasin A2 receptor	protein coding gene	yes	.;.;.	2.214	0.535	0.000	0.122(1172)	0.087(61)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TLCD1_LS0009	chr17:28725170|28725304:-	TLCD1	TLC domain containing 1	protein coding gene	no	.	10.691	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC138649.1_LS004	chr15:22764358|22774216:+	AC138649.1	-	lncRNA gene	no	ENST00000619611.4	2.598	1.528	1.775	0.112(1070)	0.184(129)	0.444(7723)	non tumor-specific	nAS	yes
UN_AL121790.1_LS0006	chr14:37564366|37571369:+	AL121790.1	-	lncRNA gene	no	.	5.887	2.436	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ARSJ_UP_LS0021	chr4:114443205|114510129:-	ARSJ	arylsulfatase family member J	protein coding gene	no	.	2.854	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCF2L2_LS0040	chr3:183287566|183287683:+	MCF2L2	MCF.2 cell line derived transforming sequence-like 2	protein coding gene	no	.	2.516	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	intron_retention	no
AL358777.1_LS004	chr6:10686257|10689989:+	AL358777.1	-	lncRNA gene	no	ENST00000649568.1	1.012	0.028	0.000	0.012(118)	0.009(6)	0(0)	non tumor-specific	nAS	yes
ABCC11_LS006	chr16:48175417|48176001:-	ABCC11	ATP binding cassette subfamily C member 11	protein coding gene	no	ENST00000565329.1	0.538	0.000	0.705	0.009(84)	0.004(3)	0.005(79)	non tumor-specific	exon_skip	yes
GUSBP1_LS012	chr5:21501826|21585530:+	GUSBP1	GUSB pseudogene 1	pseudogene	no	ENST00000607545.5	1.345	1.103	1.241	0.273(2611)	0.368(258)	0.588(10212)	non tumor-specific	nAS	yes
AC025569.1_LS005	chr12:70470308|70520199:+	AC025569.1	-	lncRNA gene	no	ENST00000549460.5	0.294	0.000	0.675	0.009(84)	0(0)	0.001(22)	non tumor-specific	nAS	yes
UN_CASR_LS0023	chr3:122257387|122260055:+	CASR	calcium sensing receptor	protein coding gene	no	.	2.418	0.408	0.000	0.004(34)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_MTX2_UP_LS0003	chr2:176246719|176257453:+	MTX2	metaxin 2	protein coding gene	no	.	1.122	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TNKS1BP1_LS013	chr11:57310556|57313509:-	TNKS1BP1	tankyrase 1 binding protein 1	protein coding gene	no	.;.	18.703	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SOX12_LS0013	chr20:326143|326409:-	SOX12	SRY-box transcription factor 12	protein coding gene	no	.	0.775	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VEGFD_LS005	chrX:15358193|15363109:-	VEGFD	vascular endothelial growth factor D	protein coding gene	no	ENST00000297904.3	6.233	12.406	3.839	0.191(1832)	0.615(432)	0.828(14388)	non tumor-specific	alt_3prime	yes
COL1A2_LS011	chr7:94404746|94404839:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	ENST00000297268.10;ENST00000620463.1	569.472	296.327	112.565	0.969(9286)	0.994(698)	0.957(16637)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C1orf162_UP_LS0003	chr1:111460983|111468110:+	C1orf162	chromosome 1 open reading frame 162	protein coding gene	no	.	1.973	0.644	0.000	0.02(195)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_GIGYF1_LS0040	chr7:100682470|100682590:-	GIGYF1	GRB10 interacting GYF protein 1	protein coding gene	no	.	3.135	0.197	0.000	0.014(137)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
ACOT7_LS012	chr1:6339589|6349749:-	ACOT7	acyl-CoA thioesterase 7	protein coding gene	no	ENST00000608083.5;ENST00000377842.7;ENST00000377845.7;ENST00000377855.6;ENST00000377860.8;ENST00000418124.5;ENST00000545482.5;ENST00000361521.8;ENST00000473466.2	98.607	59.349	27.431	0.995(9535)	0.997(700)	0.978(16996)	non tumor-specific	exon_skip	yes
UN_PER3_LS0012	chr1:7803848|7806087:+	PER3	period circadian regulator 3	protein coding gene	no	.	1.308	0.137	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
EPM2AIP1_LS001	chr3:36987229|36990376:-	EPM2AIP1	EPM2A interacting protein 1	protein coding gene	no	ENST00000623924.1	0.311	0.138	0.735	0.06(578)	0.068(48)	0.197(3430)	non tumor-specific	nAS	yes
C8orf34_LS013	chr8:68640511|68708994:+	C8orf34	chromosome 8 open reading frame 34	protein coding gene	no	ENST00000518698.5;ENST00000337103.8;ENST00000521406.5;ENST00000325233.3	3.860	2.104	1.830	0.204(1957)	0.406(285)	0.485(8432)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TPM2_LS0019	chr9:35685675|35689167:-	TPM2	tropomyosin 2	protein coding gene	no	.	26.701	35.623	0.000	0.005(44)	0.007(5)	0(0)	non tumor-specific	nAS	no
SNAP47_LS004	chr1:227728786|227758995:+	SNAP47	synaptosome associated protein 47	protein coding gene	no	ENST00000366760.5	0.257	0.153	0.770	0.651(6241)	0.637(447)	0.234(4071)	non tumor-specific	exon_skip	yes
UN_PTK7_LS0053	chr6:43160904|43160988:-	PTK7	protein tyrosine kinase 7 (inactive)	protein coding gene	yes	.	2.997	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF385C_LS006	chr17:42029073|42031619:-	ZNF385C	zinc finger protein 385C	protein coding gene	no	ENST00000618554.4;ENST00000649819.1	2.583	0.606	0.812	0.037(353)	0.023(16)	0.208(3610)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL132671.2_LS0027	chr6:117366293|117379059:-	AL132671.2	-	protein coding gene	no	.	5.212	2.382	0.000	0.072(686)	0.17(119)	0(0)	non tumor-specific	nAS	no
KRT5_LS001	chr12:52515240|52515798:-	KRT5	keratin 5	protein coding gene	no	ENST00000252242.8;ENST00000552952.1;ENST00000549511.5	1323.319	517.867	7.670	0.657(6294)	0.66(463)	0.952(16547)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LEF1_LS009	chr4:108070770|108071658:-	LEF1	lymphoid enhancer binding factor 1	protein coding gene	yes	ENST00000504426.5;ENST00000505297.5	0.025	0.046	0.853	0.542(5197)	0.43(302)	0.176(3062)	non tumor-specific	alt_5prime;exon_skip	yes
MEIS1_LS001	chr2:66433567|66437737:+	MEIS1	Meis homeobox 1	protein coding gene	yes	ENST00000496248.5	0.083	0.076	0.647	0.106(1012)	0.103(72)	0.035(617)	non tumor-specific	nAS	yes
UN_FP671120.2_UP_LS0078	chr21:8210123|8250134:-	FP671120.2	-	lncRNA gene	no	.	83.058	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HPS3_LS0002	chr3:149129940|149140007:+	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	.	2.533	0.309	0.000	0.008(75)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RRBP1_LS0011	chr20:17613809|17613872:+	RRBP1	ribosome binding protein 1	protein coding gene	no	.	2.194	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SNX31_LS015	chr8:100613085|100617620:-	SNX31	sorting nexin 31	protein coding gene	no	ENST00000311812.6;ENST00000428383.6;ENST00000520352.5;ENST00000311812.6;ENST00000428383.6;ENST00000520352.5	4.645	4.411	0.962	0.16(1531)	0.147(103)	0.263(4566)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_BCL2L2-PABPN1_LS0070	chr14:23321658|23321693:+	BCL2L2-PABPN1	BCL2L2-PABPN1 readthrough	protein coding gene	no	.	4.083	0.591	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SLC25A4_LS0002	chr4:185143483|185143987:+	SLC25A4	solute carrier family 25 member 4	protein coding gene	no	.	2.479	1.063	0.000	0.005(52)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
ZC2HC1B_LS002	chr6:143864567|143884304:+	ZC2HC1B	zinc finger C2HC-type containing 1B	protein coding gene	no	ENST00000237275.8	1.237	0.000	0.679	0(4)	0(0)	0.006(107)	non tumor-specific	nAS	yes
UN_TFPI_LS0070	chr2:187556932|187557158:+	TFPI	tissue factor pathway inhibitor	protein coding gene	no	.	4.838	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDON_LS0023	chr11:126023537|126055999:-	CDON	cell adhesion associated, oncogene regulated	protein coding gene	yes	.	1.347	0.245	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCK1_LS0009	chr3:136928227|136930447:+	NCK1	NCK adaptor protein 1	protein coding gene	no	.	2.416	0.185	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
ADGRF2_LS010	chr6:47690601|47693672:+	ADGRF2	adhesion G protein-coupled receptor F2	protein coding gene	no	ENST00000467205.6;ENST00000398742.2	2.967	0.262	1.502	0.021(197)	0.033(23)	0.152(2634)	non tumor-specific	nAS	yes
GRAMD1C_LS025	chr3:113934535|113936266:+	GRAMD1C	GRAM domain containing 1C	protein coding gene	no	ENST00000479212.5;ENST00000358160.8;ENST00000472026.5;ENST00000462838.5;ENST00000440446.2;ENST00000471031.1	6.083	10.635	3.841	0.801(7678)	0.949(666)	0.806(14012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DTNB_LS0027	chr2:25421223|25423443:+	DTNB	dystrobrevin beta	protein coding gene	no	.	3.874	1.286	0.000	0.04(385)	0.051(36)	0(0)	non tumor-specific	nAS	no
AC087301.1_LS001	chr17:73243199|73244493:+	AC087301.1	-	lncRNA gene	no	ENST00000579037.1	0.159	0.078	0.669	0.108(1032)	0.095(67)	0.007(128)	non tumor-specific	nAS	yes
UN_USP48_LS0022	chr1:21724095|21728566:-	USP48	ubiquitin specific peptidase 48	protein coding gene	no	.	7.232	0.588	0.000	0.007(63)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PTX4_LS002	chr16:1486579|1487761:-	PTX4	pentraxin 4	protein coding gene	no	ENST00000440447.2	0.100	0.000	0.623	0.003(28)	0.001(1)	0.001(12)	non tumor-specific	alt_5prime	yes
UN_KLF3-AS1_LS0013	chr4:38625283|38628039:-	KLF3-AS1	KLF3 antisense RNA 1	lncRNA gene	no	.	1.375	0.239	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	nAS	no
ERO1A_LS001	chr14:52643630|52646154:-	ERO1A	endoplasmic reticulum oxidoreductase 1 alpha	protein coding gene	no	ENST00000395686.7;ENST00000553714.1;ENST00000554019.5	79.809	32.872	29.669	0.961(9207)	0.947(665)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
PLEKHB2_LS003	chr2:131108064|131120934:+	PLEKHB2	pleckstrin homology domain containing B2	protein coding gene	no	ENST00000409612.5	0.029	0.220	0.822	0.243(2331)	0.234(164)	0.318(5528)	non tumor-specific	alt_5prime	yes
UBP1_LS019	chr3:33401016|33402801:-	UBP1	upstream binding protein 1	protein coding gene	no	ENST00000283629.7;ENST00000447368.6;ENST00000283628.9;ENST00000486388.5;ENST00000411650.5;ENST00000467613.5	55.433	44.649	45.492	0.968(9275)	0.99(695)	0.978(17008)	non tumor-specific	nAS	yes
SHANK1_LS020	chr19:50704186|50704437:-	SHANK1	SH3 and multiple ankyrin repeat domains 1	protein coding gene	no	ENST00000293441.5;ENST00000391814.5;ENST00000359082.3;ENST00000461154.1	0.294	2.247	1.624	0.27(2590)	0.207(145)	0.49(8519)	non tumor-specific	alt_5prime;intron_retention	yes
PPP1R3E_LS005	chr14:23298917|23299401:-	PPP1R3E	protein phosphatase 1 regulatory subunit 3E	protein coding gene	no	ENST00000452015.8;ENST00000560913.1;ENST00000559942.5;ENST00000561178.5;ENST00000561437.1	4.050	2.945	9.473	0.801(7671)	0.812(570)	0.971(16871)	non tumor-specific	alt_3prime;intron_retention	yes
PGS1_LS015	chr17:78399537|78400677:+	PGS1	phosphatidylglycerophosphate synthase 1	protein coding gene	no	ENST00000262764.10;ENST00000589689.5;ENST00000589426.5;ENST00000588169.5;ENST00000592043.5;ENST00000588281.5	21.792	12.071	35.970	0.992(9505)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EIF1_LS0009	chr17:41689069|41689749:+	EIF1	eukaryotic translation initiation factor 1	protein coding gene	no	.	56.773	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ERVV-2_LS001	chr19:53044958|53048867:+	ERVV-2	endogenous retrovirus group V member 2, envelope	protein coding gene	no	ENST00000601417.1	1.038	0.154	0.767	0.103(988)	0.081(57)	0.005(91)	non tumor-specific	nAS	yes
INMT-MINDY4_LS005	chr7:30766561|30778432:+	INMT-MINDY4	INMT-MINDY4 readthrough (NMD candidate)	protein coding gene	no	ENST00000458257.5	1.042	0.087	1.160	0.046(440)	0.201(141)	0.349(6075)	non tumor-specific	nAS	yes
UN_DNER_LS0009	chr2:229407345|229447316:-	DNER	delta/notch like EGF repeat containing	protein coding gene	no	.	5.226	0.488	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
CHST8_LS005	chr19:33689391|33744331:+	CHST8	carbohydrate sulfotransferase 8	protein coding gene	no	ENST00000604556.1	0.173	0.032	0.783	0.151(1442)	0.117(82)	0.106(1839)	non tumor-specific	exon_skip;mutex_exons	yes
ITGB8_LS019	chr7:20398994|20401721:+	ITGB8	integrin subunit beta 8	protein coding gene	no	ENST00000537992.5;ENST00000222573.4	16.444	11.141	3.143	0.713(6830)	0.788(553)	0.75(13041)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AKTIP_LS010	chr16:53495326|53498391:-	AKTIP	AKT interacting protein	protein coding gene	yes	ENST00000394657.11;ENST00000300245.8;ENST00000570004.5;ENST00000568022.5;ENST00000563928.5;ENST00000563108.5;ENST00000565408.5;ENST00000568596.5;ENST00000566045.5;ENST00000561799.5	19.843	17.901	39.634	0.987(9457)	0.997(700)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_SCMH1_LS0018	chr1:41028726|41031001:-	SCMH1	Scm polycomb group protein homolog 1	protein coding gene	no	.	2.866	0.105	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
AFG3L1P_LS008	chr16:89978878|89979715:+	AFG3L1P	AFG3 like matrix AAA peptidase subunit 1, pseudogene	pseudogene	no	ENST00000431757.5	0.028	0.006	0.651	0.049(470)	0.027(19)	0.041(705)	non tumor-specific	nAS	yes
UN_GKAP1_LS0023	chr9:83798098|83799185:-	GKAP1	G kinase anchoring protein 1	protein coding gene	no	.	1.622	0.181	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
HAMP_LS006	chr19:35282667|35284789:+	HAMP	hepcidin antimicrobial peptide	protein coding gene	no	ENST00000598398.5;ENST00000222304.4;ENST00000598398.5;ENST00000222304.4;ENST00000598398.5;ENST00000222304.4	10.076	105.454	2.487	0.802(7688)	0.711(499)	0.681(11839)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_B2M_LS0038	chr15:44715651|44717651:-	B2M	beta-2-microglobulin	protein coding gene	no	.	53.966	1.625	0.000	0.006(58)	0.004(3)	0(0)	non tumor-specific	nAS	no
WWC1_LS025	chr5:168441834|168444521:+	WWC1	WW and C2 domain containing 1	protein coding gene	no	.;.	26.156	0.123	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LEMD2_LS007	chr6:33777239|33778242:-	LEMD2	LEM domain nuclear envelope protein 2	protein coding gene	no	ENST00000293760.9;ENST00000511171.5;ENST00000614475.4;ENST00000421671.6;ENST00000508327.5;ENST00000510598.5;ENST00000504692.1;ENST00000502643.5;ENST00000513832.5;ENST00000442696.6	98.947	46.470	79.948	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ARL17B_LS009	chr17:46334837|46352820:-	ARL17B	ADP ribosylation factor like GTPase 17B	protein coding gene	no	ENST00000571246.5	0.047	0.022	0.650	0.45(4310)	0.479(336)	0.002(34)	non tumor-specific	exon_skip	yes
UN_SYNPO_LS0033	chr5:150622661|150623035:-	SYNPO	synaptopodin	protein coding gene	no	.	1.658	0.319	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NPIPA3_LS0014	chr16:14726162|14726232:-	NPIPA3	nuclear pore complex interacting protein family member A3	protein coding gene	no	.	9.797	2.126	0.000	0.092(884)	0.063(44)	0(0)	non tumor-specific	nAS	no
UN_ITGA5_LS0037	chr12:54395585|54397628:+	ITGA5	integrin subunit alpha 5	protein coding gene	yes	.	5.210	7.457	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
DNAJC6_LS017	chr1:65392865|65394898:+	DNAJC6	DnaJ heat shock protein family (Hsp40) member C6	protein coding gene	no	ENST00000263441.11;ENST00000395325.7;ENST00000371069.4	8.904	18.120	2.870	0.515(4938)	0.604(424)	0.82(14252)	non tumor-specific	nAS	yes
UN_FGL1_LS0009	chr8:17876432|17877449:+	FGL1	fibrinogen like 1	protein coding gene	no	.	3.462	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PCNX1_LS038	chr14:71053412|71073545:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000556849.2	0.194	0.035	0.564	0.042(407)	0.037(26)	0.002(43)	non tumor-specific	nAS	yes
DYNC1H1_LS042	chr14:102020056|102022751:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	ENST00000360184.9;ENST00000643508.1;ENST00000647366.1;ENST00000643279.1;ENST00000645039.1;ENST00000645149.1;ENST00000555204.2	47.238	37.799	43.463	0.958(9183)	0.987(693)	0.977(16981)	non tumor-specific	exon_skip	yes
UN_EMP2_LS0067	chr16:10533620|10537928:-	EMP2	epithelial membrane protein 2	protein coding gene	yes	.	3.674	0.312	0.000	0.004(36)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_CTNNBIP1_UP_LS0004	chr1:9927765|10004458:-	CTNNBIP1	catenin beta interacting protein 1	protein coding gene	yes	.	5.522	1.411	0.000	0.01(92)	0.016(11)	0(0)	non tumor-specific	nAS	no
AOX2P_LS013	chr2:200756656|200758959:+	AOX2P	aldehyde oxidase 2, pseudogene	pseudogene	no	ENST00000487742.7	1.303	0.000	0.655	0.001(12)	0(0)	0.009(162)	non tumor-specific	nAS	yes
AL354989.1_LS001	chr9:34084412|34089805:+	AL354989.1	-	lncRNA gene	no	ENST00000448245.1	0.906	0.035	0.747	0.007(71)	0.001(1)	0.031(542)	non tumor-specific	nAS	yes
ATP2B1_LS027	chr12:89656107|89708596:-	ATP2B1	ATPase plasma membrane Ca2+ transporting 1	protein coding gene	no	ENST00000428670.7	3.914	3.443	2.374	0.711(6816)	0.846(594)	0.823(14300)	non tumor-specific	exon_skip	yes
ANGEL2_LS002	chr1:212997318|213000326:-	ANGEL2	angel homolog 2	protein coding gene	no	ENST00000366962.7;ENST00000360506.6;ENST00000535388.2;ENST00000473303.1;ENST00000498650.1	26.959	14.913	24.279	0.994(9527)	0.997(700)	0.978(17003)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KCNQ4_LS0022	chr1:40833113|40834951:+	KCNQ4	potassium voltage-gated channel subfamily Q member 4	protein coding gene	no	.	2.045	0.625	0.000	0.01(92)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MMS19_LS0007	chr10:97459475|97459659:-	MMS19	MMS19 homolog, cytosolic iron-sulfur assembly component	protein coding gene	no	.	6.749	1.738	0.000	0.007(68)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
AL591485.1_LS019	chr6:8558643|8653545:+	AL591485.1	-	no	no	ENST00000642168.1;ENST00000643889.1	0.240	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
AL049795.1_LS003	chr1:32206308|32206400:-	AL049795.1	-	lncRNA gene	no	ENST00000421616.1	0.354	0.048	0.800	0.058(559)	0.04(28)	0.265(4601)	non tumor-specific	nAS	yes
UBR4_LS019	chr1:19088977|19092819:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7;ENST00000375224.1	101.062	72.688	95.856	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MOGAT2_LS0002	chr11:75718323|75722688:-	MOGAT2	monoacylglycerol O-acyltransferase 2	protein coding gene	no	.	1.242	0.277	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPX7_LS006	chr1:52606945|52608264:+	GPX7	glutathione peroxidase 7	protein coding gene	no	.;.	6.562	1.423	0.000	0.02(195)	0.036(25)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TBCE_LS055	chr1:235434280|235435745:+	TBCE	tubulin folding cofactor E	protein coding gene	no	ENST00000643418.1;ENST00000647428.1;ENST00000645655.1;ENST00000644055.1;ENST00000646528.1;ENST00000647186.1;ENST00000646624.1;ENST00000643410.1;ENST00000645205.1;ENST00000645351.1;ENST00000645836.1;ENST00000646281.1;ENST00000642503.1;ENST00000644680.1;ENST00000645578.1;ENST00000642431.1;ENST00000644604.1	33.495	16.025	22.386	0.993(9515)	0.997(700)	0.978(17006)	non tumor-specific	exon_skip	yes
AC010504.1_LS002	chr19:34358916|34359325:-	AC010504.1	-	lncRNA gene	no	ENST00000591311.1	0.387	0.296	0.857	0.191(1827)	0.271(190)	0.378(6564)	non tumor-specific	nAS	yes
STK17B_LS012	chr2:196163427|196176226:-	STK17B	serine/threonine kinase 17b	protein coding gene	no	ENST00000409228.5	0.184	0.378	0.809	0.25(2396)	0.318(223)	0.041(711)	non tumor-specific	exon_skip	yes
UN_FXYD6-FXYD2_LS0058	chr11:117836469|117837181:-	FXYD6-FXYD2	FXYD6-FXYD2 readthrough	protein coding gene	no	.	1.388	0.796	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTGFRN_LS008	chr1:116974323|116984680:+	PTGFRN	prostaglandin F2 receptor inhibitor	protein coding gene	no	ENST00000393203.2	64.027	37.014	13.838	0.969(9288)	0.991(696)	0.928(16122)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PIGQ_LS0025	chr16:578495|578796:-	PIGQ	phosphatidylinositol glycan anchor biosynthesis class Q	protein coding gene	no	.	3.561	0.611	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
CBX5_LS003	chr12:54252227|54257514:-	CBX5	chromobox 5	protein coding gene	yes	ENST00000209875.8;ENST00000439541.6;ENST00000550411.5;ENST00000552562.1	46.982	21.922	18.500	0.995(9531)	0.997(700)	0.978(17008)	non tumor-specific	exon_skip	yes
UN_UBE2J2_LS0030	chr1:1266216|1267862:-	UBE2J2	ubiquitin conjugating enzyme E2 J2	protein coding gene	no	.	1.068	0.023	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_ZNF83_LS0069	chr19:52613487|52613824:+	ZNF83	zinc finger protein 83	protein coding gene	no	.	2.378	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
AL035604.1_LS002	chr6:135629623|135629957:-	AL035604.1	-	lncRNA gene	no	ENST00000416481.1	0.373	0.200	0.892	0.001(8)	0.014(10)	0.001(25)	non tumor-specific	nAS	yes
NAMPT_LS021	chr7:106284981|106285541:-	NAMPT	nicotinamide phosphoribosyltransferase	protein coding gene	no	ENST00000424768.1	0.300	2.065	1.400	0.728(6979)	0.826(580)	0.623(10825)	non tumor-specific	alt_3prime	yes
MAOA_LS003	chrX:43657969|43683513:+	MAOA	monoamine oxidase A	protein coding gene	no	ENST00000542639.5;ENST00000497485.1	2.339	5.891	4.078	0.534(5115)	0.906(636)	0.819(14232)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ERRFI1_LS0017	chr1:8015692|8022393:-	ERRFI1	ERBB receptor feedback inhibitor 1	protein coding gene	yes	.	4.253	3.050	0.000	0.02(189)	0.046(32)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
P2RX3_LS007	chr11:57348354|57348627:+	P2RX3	purinergic receptor P2X 3	protein coding gene	no	ENST00000534820.1	0.217	0.000	0.840	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
KLHDC2_LS021	chr14:49782457|49782542:+	KLHDC2	kelch domain containing 2	protein coding gene	no	ENST00000298307.9;ENST00000555443.5;ENST00000554115.5;ENST00000553579.1	104.479	75.177	132.900	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TMEM119_LS003	chr12:108592397|108597970:-	TMEM119	transmembrane protein 119	protein coding gene	no	ENST00000392806.3;ENST00000549031.1	6.586	6.294	5.406	0.799(7655)	0.866(608)	0.825(14344)	non tumor-specific	exon_skip	yes
LINC00511_LS002	chr17:72323320|72325793:-	LINC00511	long intergenic non-protein coding RNA 511	lncRNA gene	no	ENST00000579631.2;ENST00000648840.1;ENST00000650476.1;ENST00000649614.1;ENST00000648907.1;ENST00000649595.1	0.721	0.184	1.239	0.44(4217)	0.165(116)	0.276(4789)	non tumor-specific	nAS	yes
UN_CDH4_LS0023	chr20:61393887|61394337:-	CDH4	cadherin 4	protein coding gene	yes	.	2.330	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL132640.1_UP_LS0003	chr14:67532692|67541834:+	AL132640.1	-	pseudogene	no	.	2.112	0.278	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_BX323043.1_UP_LS0004	chr1:9427381|9441809:-	BX323043.1	-	lncRNA gene	no	.	0.798	0.022	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
NCAM1_LS048	chr11:113273048|113275267:+	NCAM1	neural cell adhesion molecule 1	protein coding gene	no	ENST00000611284.4	0.006	0.318	0.913	0.124(1189)	0.134(94)	0.079(1381)	non tumor-specific	alt_5prime;exon_skip	yes
SEC14L1_LS427	chr17:77216127|77216310:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	9.082	0.183	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_MYLIP_LS0009	chr6:16143217|16143704:+	MYLIP	myosin regulatory light chain interacting protein	protein coding gene	no	.	6.964	4.041	0.000	0.014(135)	0.026(18)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ADAMTS18_LS017	chr16:77359423|77362105:-	ADAMTS18	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein coding gene	yes	ENST00000282849.9	3.374	1.296	1.511	0.048(460)	0.085(60)	0.185(3217)	non tumor-specific	exon_skip	yes
UN_AC010460.1_UP_LS0029	chr5:23823369|23926519:-	AC010460.1	-	pseudogene	no	.	3.169	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OGFR_LS0089	chr20:62813678|62813777:-	OGFR	opioid growth factor receptor	protein coding gene	no	.	1.977	0.300	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
FRY_LS047	chr13:32224385|32224933:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	5.498	5.487	5.805	0.566(5420)	0.808(567)	0.939(16315)	non tumor-specific	nAS	yes
UN_LINC00486_LS0185	chr2:32916345|32916475:+	LINC00486	long intergenic non-protein coding RNA 486	lncRNA gene	no	.	367.279	237.647	0.000	0.261(2496)	0.145(102)	0(0)	non tumor-specific	nAS	no
PSMD1_LS017	chr2:231082994|231083567:+	PSMD1	proteasome 26S subunit, non-ATPase 1	protein coding gene	no	ENST00000373635.8;ENST00000308696.10;ENST00000431051.5;ENST00000409643.5;ENST00000619128.4	71.098	41.887	60.498	0.993(9515)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
UN_TPTEP2-CSNK1E_LS0062	chr22:38353134|38361399:-	TPTEP2-CSNK1E	TPTEP2-CSNK1E readthrough	protein coding gene	no	.	3.741	0.616	0.000	0.015(141)	0.019(13)	0(0)	non tumor-specific	nAS	no
ANKRD36_LS083	chr2:97249645|97250144:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	ENST00000461153.7;ENST00000420699.7;ENST00000494336.1	1.825	0.436	0.706	0.813(7787)	0.749(526)	0.117(2029)	non tumor-specific	nAS	yes
ATP2B3_LS006	chrX:153542448|153543043:+	ATP2B3	ATPase plasma membrane Ca2+ transporting 3	protein coding gene	no	ENST00000349466.6;ENST00000370186.5;ENST00000393842.5;ENST00000359149.7;ENST00000263519.4	6.715	3.403	2.685	0.076(725)	0.05(35)	0.261(4533)	non tumor-specific	nAS	yes
KDM3B_LS027	chr5:138429965|138430249:+	KDM3B	lysine demethylase 3B	protein coding gene	yes	ENST00000314358.9;ENST00000510866.5;ENST00000542866.2;ENST00000507996.5	106.751	60.705	64.118	0.991(9495)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
IAPP_LS008	chr12:21376364|21378237:+	IAPP	islet amyloid polypeptide	protein coding gene	no	ENST00000535428.1	0.000	0.000	0.495	0(0)	0(0)	0.001(23)	non tumor-specific	nAS	yes
UN_ITGB2_LS0075	chr21:44921327|44926807:+	ITGB2	integrin subunit beta 2	protein coding gene	no	.	1.132	0.185	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNRD1ASP_LS012	chr6:30021761|30034908:-	ZNRD1ASP	zinc ribbon domain containing 1 antisense, pseudogene	pseudogene	no	ENST00000376797.7;ENST00000444051.1;ENST00000437417.5	0.661	0.347	2.858	0.728(6974)	0.739(519)	0.905(15726)	non tumor-specific	nAS	yes
UN_PVT1_LS0206	chr8:128070272|128082753:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	2.243	0.296	0.000	0.029(278)	0.007(5)	0(0)	non tumor-specific	nAS	no
SNED1_LS004	chr2:241034730|241036790:+	SNED1	sushi, nidogen and EGF like domains 1	protein coding gene	no	ENST00000401884.5;ENST00000405547.7;ENST00000310397.12	5.227	5.458	5.989	0.594(5695)	0.892(626)	0.883(15342)	non tumor-specific	alt_5prime	yes
MUC4_LS209	chr3:195781609|195782378:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	6.320	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
TSPO_LS008	chr22:43152220|43159210:+	TSPO	translocator protein	protein coding gene	no	ENST00000428336.5;ENST00000396265.4;ENST00000428336.5;ENST00000396265.4	6.582	3.693	2.527	0.925(8865)	0.92(646)	0.785(13641)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PRRC2A_LS0116	chr6:31631536|31631598:-	PRRC2A	proline rich coiled-coil 2A	protein coding gene	no	.	3.249	0.301	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HM13_LS0064	chr20:31561697|31569273:-	HM13	histocompatibility minor 13	protein coding gene	no	.	1.402	0.792	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
FANK1_LS013	chr10:125996624|125997420:+	FANK1	fibronectin type III and ankyrin repeat domains 1	protein coding gene	no	ENST00000368693.5;ENST00000368695.5;ENST00000492670.5;ENST00000456942.1;ENST00000464130.5	9.871	6.267	5.655	0.863(8265)	0.895(628)	0.891(15490)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IQGAP2_LS0028	chr5:76671983|76673453:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	.	13.845	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_NMT1_LS0018	chr17:45103021|45107779:+	NMT1	N-myristoyltransferase 1	protein coding gene	no	.	4.079	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZCCHC7_LS019	chr9:37327023|37327799:+	ZCCHC7	zinc finger CCHC-type containing 7	protein coding gene	no	ENST00000481507.5	0.147	0.152	0.657	0.018(170)	0.028(20)	0.007(113)	non tumor-specific	nAS	yes
SLC25A48_LS014	chr5:135871718|135874021:+	SLC25A48	solute carrier family 25 member 48	protein coding gene	no	ENST00000646290.1;ENST00000650267.1;ENST00000510147.2;ENST00000433282.6	2.561	2.802	2.678	0.252(2410)	0.286(201)	0.354(6159)	non tumor-specific	alt_5prime;exon_skip	yes
CLTCL1_LS011	chr22:19183611|19191304:-	CLTCL1	clathrin heavy chain like 1	protein coding gene	no	ENST00000622493.4	0.269	0.152	1.145	0.07(669)	0.046(32)	0.478(8305)	non tumor-specific	exon_skip	yes
UN_MED12_LS0016	chrX:71128853|71129114:+	MED12	mediator complex subunit 12	protein coding gene	no	.	0.916	0.784	0.000	0.025(237)	0.023(16)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_FMNL3_LS0060	chr12:49700711|49707055:-	FMNL3	formin like 3	protein coding gene	no	.	0.991	0.197	0.000	0.009(82)	0.014(10)	0(0)	non tumor-specific	nAS	no
EGFL7_LS024	chr9:136671014|136671926:+	EGFL7	EGF like domain multiple 7	protein coding gene	no	ENST00000371699.5;ENST00000308874.11;ENST00000406555.7;ENST00000492002.1;ENST00000371698.3;ENST00000371699.5;ENST00000308874.11;ENST00000406555.7;ENST00000492002.1;ENST00000371698.3	101.424	85.924	107.137	0.993(9514)	0.997(700)	0.978(16992)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_POLR2A_LS0090	chr17:7513056|7513396:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	3.372	0.649	0.000	0.009(90)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_ITPRID2_LS0023	chr2:181913933|181915222:+	ITPRID2	ITPR interacting domain containing 2	protein coding gene	no	.	10.215	3.565	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CYP2C19_LS0013	chr10:94843024|94849089:+	CYP2C19	cytochrome P450 family 2 subfamily C member 19	protein coding gene	no	.	3.001	0.436	0.000	0.01(93)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
N4BP1_LS009	chr16:48548114|48553539:-	N4BP1	NEDD4 binding protein 1	protein coding gene	no	ENST00000565638.1	1.639	0.854	3.374	0.817(7825)	0.819(575)	0.818(14215)	non tumor-specific	alt_3prime;exon_skip	yes
WDR13_LS009	chrX:48598957|48599353:+	WDR13	WD repeat domain 13	protein coding gene	no	ENST00000376729.9;ENST00000218056.9;ENST00000498631.5;ENST00000486125.5;ENST00000479279.5;ENST00000466962.1	56.454	43.269	104.926	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CASP8AP2_LS011	chr6:89864371|89865953:+	CASP8AP2	caspase 8 associated protein 2	protein coding gene	no	ENST00000551025.3;ENST00000237177.10	6.835	3.812	6.507	0.826(7914)	0.893(627)	0.942(16376)	non tumor-specific	nAS	yes
CHCHD7_LS006	chr8:56211837|56214602:+	CHCHD7	coiled-coil-helix-coiled-coil-helix domain containing 7	protein coding gene	no	.;.	7.504	0.672	0.000	0.013(121)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MRM1_LS0001	chr17:36601999|36602057:+	MRM1	mitochondrial rRNA methyltransferase 1	protein coding gene	no	.	1.409	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRDM11_LS0029	chr11:45183123|45188286:+	PRDM11	PR/SET domain 11	protein coding gene	yes	.	0.537	0.157	0.000	0.01(98)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MRC2_LS032	chr17:62690305|62690642:+	MRC2	mannose receptor C type 2	protein coding gene	no	ENST00000303375.9;ENST00000583597.5;ENST00000446119.2	94.721	61.901	53.158	0.981(9395)	0.997(700)	0.977(16978)	non tumor-specific	alt_3prime	yes
TAMM41_LS010	chr3:11809682|11810776:-	TAMM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein coding gene	no	ENST00000486090.1;ENST00000414736.1	0.507	0.211	2.201	0.404(3871)	0.356(250)	0.837(14557)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM184B_LS0084	chr22:38222471|38231294:+	TMEM184B	transmembrane protein 184B	protein coding gene	no	.	1.305	0.145	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
USP6_LS044	chr17:5171679|5172805:+	USP6	ubiquitin specific peptidase 6	protein coding gene	yes	ENST00000574788.5;ENST00000575709.5;ENST00000572949.5;ENST00000250066.6	2.819	0.559	1.621	0.066(628)	0.088(62)	0.326(5666)	non tumor-specific	nAS	yes
ADAM15_LS034	chr1:155058787|155059902:+	ADAM15	ADAM metallopeptidase domain 15	protein coding gene	no	ENST00000527418.5;ENST00000529473.5;ENST00000526491.5;ENST00000356955.6;ENST00000449910.6;ENST00000359280.8;ENST00000360674.8;ENST00000368412.7;ENST00000355956.6;ENST00000271836.10;ENST00000461564.6;ENST00000368413.5;ENST00000531455.5;ENST00000472434.5;ENST00000498481.6;ENST00000461234.5;ENST00000474709.5;ENST00000462116.5	238.341	116.330	149.845	0.999(9568)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
CCDC9_LS011	chr19:47260422|47260588:+	CCDC9	coiled-coil domain containing 9	protein coding gene	no	ENST00000221922.10;ENST00000643617.1;ENST00000599398.5	36.696	22.399	37.856	0.992(9505)	0.996(699)	0.979(17020)	non tumor-specific	nAS	yes
SLC44A5_LS017	chr1:75237070|75238513:-	SLC44A5	solute carrier family 44 member 5	protein coding gene	no	ENST00000370859.7;ENST00000370855.5	5.309	2.451	1.294	0.369(3540)	0.338(237)	0.36(6251)	non tumor-specific	nAS	yes
UN_PSMC5_LS0011	chr17:63831810|63831925:+	PSMC5	proteasome 26S subunit, ATPase 5	protein coding gene	no	.	39.437	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ERCC2_LS025	chr19:45365158|45368630:-	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit	protein coding gene	no	ENST00000391945.9;ENST00000646507.1;ENST00000391941.6;ENST00000485403.6;ENST00000586131.6;ENST00000586441.1;ENST00000586856.1	26.472	14.977	15.252	0.978(9367)	0.991(696)	0.978(17005)	non tumor-specific	exon_skip	yes
ALDH1A1_LS013	chr9:72940252|72952935:-	ALDH1A1	aldehyde dehydrogenase 1 family member A1	protein coding gene	yes	ENST00000297785.7;ENST00000376939.5;ENST00000482210.5;ENST00000419959.5;ENST00000446946.1;ENST00000493113.1	62.619	106.185	82.451	0.941(9015)	0.993(697)	0.973(16912)	non tumor-specific	exon_skip	yes
UN_SIRPA_LS0084	chr20:1937978|1938003:-	SIRPA	signal regulatory protein alpha	protein coding gene	no	.	2.965	0.471	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC02241_LS0051	chr5:20895567|20899333:+	LINC02241	long intergenic non-protein coding RNA 2241	lncRNA gene	no	.	2.214	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
KPNA4_LS016	chr3:160535565|160535661:-	KPNA4	karyopherin subunit alpha 4	protein coding gene	no	ENST00000334256.8	59.607	37.027	27.488	0.971(9304)	0.987(693)	0.978(17007)	non tumor-specific	nAS	yes
LINC-PINT_LS012	chr7:130945835|130984053:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000647388.1;ENST00000423414.5;ENST00000433079.5;ENST00000451786.5;ENST00000443623.5;ENST00000646587.1;ENST00000645248.1;ENST00000642602.1;ENST00000644804.1;ENST00000643855.1;ENST00000435523.5	9.831	7.889	31.605	0.813(7787)	0.875(614)	0.978(17006)	non tumor-specific	nAS	yes
UN_CTSB_LS0235	chr8:11847094|11849096:-	CTSB	cathepsin B	protein coding gene	no	.	242.758	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRPV2_LS0013	chr17:16428429|16428817:+	TRPV2	transient receptor potential cation channel subfamily V member 2	protein coding gene	no	.	11.768	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
DLG3_LS034	chrX:70500580|70500898:+	DLG3	membrane palmitoylated protein 3	protein coding gene	no	ENST00000194900.8;ENST00000374360.7;ENST00000463252.5;ENST00000374355.7;ENST00000542398.1;ENST00000461646.1	53.392	37.673	21.637	0.96(9193)	0.973(683)	0.962(16730)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC087855.2_LS0003	chr8:34182211|34184487:+	AC087855.2	-	lncRNA gene	no	.	0.761	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DEAF1_LS0016	chr11:651946|653962:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	.	3.025	0.000	0.000	0.007(70)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
KBTBD12_LS003	chr3:127915586|127930133:+	KBTBD12	kelch repeat and BTB domain containing 12	protein coding gene	no	.;.	1.040	0.159	0.000	0.001(9)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CD74_LS018	chr5:150405180|150406259:-	CD74	CD74 molecule	protein coding gene	no	ENST00000353334.10;ENST00000518797.5;ENST00000009530.11;ENST00000517752.5;ENST00000522246.5;ENST00000353334.10;ENST00000518797.5;ENST00000009530.11;ENST00000517752.5;ENST00000522246.5	3965.654	2850.669	703.342	0.998(9562)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
EDC4_LS031	chr16:67882594|67882679:+	EDC4	enhancer of mRNA decapping 4	protein coding gene	no	ENST00000358933.9;ENST00000572221.5;ENST00000573992.5;ENST00000575507.1;ENST00000577105.1	84.560	42.521	86.074	0.995(9532)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SSBP2_UP_LS0011	chr5:81820939|81822194:-	SSBP2	single stranded DNA binding protein 2	protein coding gene	yes	.	2.943	0.172	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTPN9_LS010	chr15:75509027|75517259:-	PTPN9	protein tyrosine phosphatase non-receptor type 9	protein coding gene	no	ENST00000618819.4;ENST00000306726.6	23.901	18.205	17.964	0.963(9230)	0.984(691)	0.976(16964)	non tumor-specific	exon_skip	yes
POLG_LS048	chr15:89327063|89327167:-	POLG	DNA polymerase gamma, catalytic subunit	protein coding gene	no	ENST00000631044.2;ENST00000268124.9;ENST00000442287.6;ENST00000637264.1;ENST00000637238.1	42.242	23.838	33.420	0.964(9232)	0.986(692)	0.979(17020)	non tumor-specific	alt_3prime;intron_retention	yes
SSR2_LS033	chr1:156020167|156020888:-	SSR2	signal sequence receptor subunit 2	protein coding gene	no	ENST00000295702.8;ENST00000529008.5;ENST00000496742.5;ENST00000484320.6;ENST00000532074.5;ENST00000480176.5;ENST00000473699.5;ENST00000531790.5;ENST00000368311.5;ENST00000472898.5;ENST00000474377.5;ENST00000466905.4	139.592	90.506	167.683	0.972(9311)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC137630.1_LS0006	chr3:48985733|48989548:-	AC137630.1	-	lncRNA gene	no	.	1.901	0.817	0.000	0.019(178)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_FGFRL1_LS0101	chr4:1025755|1025814:-	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	6.004	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
KIR3DL1_LS003	chr19:54817569|54819713:+	KIR3DL1	killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 1	protein coding gene	no	ENST00000358178.4	0.312	0.011	0.957	0.002(18)	0.01(7)	0.016(276)	non tumor-specific	nAS	yes
PCNX2_LS013	chr1:233054483|233057232:-	PCNX2	pecanex 2	protein coding gene	no	ENST00000258229.13;ENST00000344698.6;ENST00000462233.5	4.625	3.742	5.606	0.807(7735)	0.801(562)	0.91(15826)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EDNRB_LS0016	chr13:77919584|77924387:-	EDNRB	endothelin receptor type B	protein coding gene	yes	.	2.981	0.157	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC004233.2_LS010	chr16:2994727|2994806:+	AC004233.2	-	protein coding gene	no	ENST00000573315.2	16.758	0.195	0.804	0.021(200)	0.001(1)	0.112(1944)	non tumor-specific	nAS	yes
UN_ADGRL2_LS0062	chr1:81907230|81917774:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	.	2.348	0.074	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_BLM_LS0040	chr15:90777923|90782822:+	BLM	BLM RecQ like helicase	protein coding gene	yes	.	1.163	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_LY6G6C_LS0015	chr6:31720174|31720250:-	LY6G6C	lymphocyte antigen 6 family member G6C	protein coding gene	no	.	1.657	1.053	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TTC21A_LS039	chr3:39137253|39137486:+	TTC21A	tetratricopeptide repeat domain 21A	protein coding gene	no	ENST00000430597.6	0.694	0.243	2.342	0.154(1476)	0.217(152)	0.828(14387)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
CCSER1_LS035	chr4:91283854|91598572:+	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	ENST00000649522.1	2.644	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GGA2_LS0049	chr16:23494378|23495139:-	GGA2	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein coding gene	no	.	1.392	1.148	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TTPA_LS005	chr8:63064316|63085818:-	TTPA	alpha tocopherol transfer protein	protein coding gene	no	.;.	0.581	0.244	0.000	0.008(75)	0.033(23)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TEX11_LS010	chrX:70610543|70623950:-	TEX11	testis expressed 11	protein coding gene	no	ENST00000374333.6;ENST00000374320.6;ENST00000344304.3;ENST00000395889.6	8.966	0.000	0.791	0.028(267)	0(0)	0.015(266)	non tumor-specific	nAS	yes
UN_FLJ12825_UP_LS0005	chr12:53995016|54047769:+	FLJ12825	-	lncRNA gene	no	.	1.034	0.077	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
CAV2_LS006	chr7:116427486|116432959:+	CAV2	caveolin 2	protein coding gene	no	ENST00000467035.5	0.000	3.327	0.679	0(0)	0.004(3)	0.006(110)	non tumor-specific	nAS	yes
UN_PLSCR2_LS0026	chr3:146460083|146468886:-	PLSCR2	phospholipid scramblase 2	protein coding gene	no	.	2.804	0.358	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	nAS	no
PLCB4_LS053	chr20:9472847|9473279:+	PLCB4	phospholipase C beta 4	protein coding gene	no	ENST00000378473.7;ENST00000278655.8;ENST00000414679.6;ENST00000378493.5;ENST00000492632.5;ENST00000378501.2;ENST00000464199.5;ENST00000473151.5;ENST00000482123.1	20.607	11.071	17.271	0.729(6987)	0.869(610)	0.92(15988)	non tumor-specific	nAS	yes
SHANK2_LS038	chr11:71075275|71092422:-	SHANK2	SH3 and multiple ankyrin repeat domains 2	protein coding gene	no	ENST00000601538.5;ENST00000618363.4;ENST00000608988.5;ENST00000458632.2	4.119	3.962	1.573	0.561(5379)	0.781(548)	0.346(6017)	non tumor-specific	nAS	yes
PDE9A_LS009	chr21:42653883|42733356:+	PDE9A	phosphodiesterase 9A	protein coding gene	no	ENST00000398227.7;ENST00000460989.5	0.162	0.069	0.697	0.514(4920)	0.627(440)	0.032(561)	non tumor-specific	exon_skip	yes
UN_TCEANC_LS0001	chrX:13655373|13659652:+	TCEANC	transcription elongation factor A N-terminal and central domain containing	protein coding gene	no	.	2.465	1.191	0.000	0.057(548)	0.075(53)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CRTC3_LS0024	chr15:90604447|90614453:+	CRTC3	CREB regulated transcription coactivator 3	protein coding gene	no	.	3.000	0.180	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_GMEB1_LS0003	chr1:28671195|28683583:+	GMEB1	glucocorticoid modulatory element binding protein 1	protein coding gene	no	.	2.313	0.103	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MTDH_UP_LS0001	chr8:97440812|97440965:+	MTDH	metadherin	protein coding gene	yes	.	1.798	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ENTPD3_LS010	chr3:40416073|40422850:+	ENTPD3	ectonucleoside triphosphate diphosphohydrolase 3	protein coding gene	no	ENST00000301825.7;ENST00000647765.1;ENST00000456402.5;ENST00000445129.1	7.696	7.239	3.689	0.532(5094)	0.845(593)	0.737(12810)	non tumor-specific	nAS	yes
COL7A1_LS044	chr3:48573725|48573855:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000487017.5;ENST00000328333.12	15.615	3.552	12.098	0.639(6119)	0.427(300)	0.956(16611)	non tumor-specific	alt_3prime	yes
DIS3L_LS001	chr15:66293336|66294988:+	DIS3L	DIS3 like exosome 3'-5' exoribonuclease	protein coding gene	no	ENST00000525134.6	0.128	0.202	0.832	0.326(3128)	0.407(286)	0.273(4744)	non tumor-specific	alt_5prime	yes
UN_TRBV5-1_LS0001	chr7:142320745|142320890:+	TRBV5-1	T cell receptor beta variable 5-1	no	no	.	0.641	0.302	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
AGL_LS013	chr1:99870869|99874687:+	AGL	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein coding gene	no	ENST00000361915.7;ENST00000294724.8;ENST00000370165.7;ENST00000370163.7;ENST00000361302.7;ENST00000370161.6;ENST00000637337.1	7.886	9.046	4.279	0.767(7349)	0.946(664)	0.872(15161)	non tumor-specific	exon_skip	yes
LIVAR_LS001	chr18:70336215|70337214:-	LIVAR	liver cell viability associated lncRNA	lncRNA gene	no	ENST00000578633.1	0.420	0.201	0.920	0.156(1490)	0.137(96)	0.138(2394)	non tumor-specific	nAS	yes
RUNDC3A_LS001	chr17:44308939|44312580:+	RUNDC3A	RUN domain containing 3A	protein coding gene	no	ENST00000590834.5;ENST00000426726.7;ENST00000590941.5;ENST00000225441.11	22.509	29.218	4.210	0.438(4200)	0.417(293)	0.731(12708)	non tumor-specific	exon_skip	yes
UN_AL365273.2_LS0024	chr10:95899018|95904565:-	AL365273.2	-	protein coding gene	no	.	1.468	0.622	0.000	0.002(20)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SRRM2_LS0041	chr16:2761976|2762211:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	54.795	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SCN2A_LS0001	chr2:165195083|165201939:+	SCN2A	symbol withdrawn, see [HGNC:10588](/data/gene-symbol-report/#!/hgnc_id/HGNC:10588)	protein coding gene	no	.	2.485	0.207	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC02577_LS0001	chr7:106775200|106777542:+	LINC02577	long intergenic non-protein coding RNA 2577	lncRNA gene	no	.	2.987	0.078	0.000	0.021(203)	0.001(1)	0(0)	non tumor-specific	nAS	no
PBRM1_LS036	chr3:52651810|52658199:-	PBRM1	polybromo 1	protein coding gene	yes	ENST00000356770.8;ENST00000394830.7;ENST00000296302.11;ENST00000337303.8;ENST00000412587.5;ENST00000409057.5;ENST00000410007.5;ENST00000409114.7;ENST00000409767.5;ENST00000423351.5;ENST00000446103.5;ENST00000431678.5	11.014	7.602	8.237	0.844(8087)	0.952(668)	0.949(16492)	non tumor-specific	exon_skip	yes
UN_SCAF1_LS0146	chr19:49658461|49658555:-	SCAF1	SR-related CTD associated factor 1	protein coding gene	no	.	5.805	1.232	0.000	0.01(100)	0.006(4)	0(0)	non tumor-specific	nAS	no
RABGAP1_LS021	chr9:122997361|122998597:+	RABGAP1	RAB GTPase activating protein 1	protein coding gene	no	ENST00000456584.5;ENST00000373647.8	17.793	16.907	22.946	0.898(8606)	0.967(679)	0.974(16929)	non tumor-specific	alt_3prime;exon_skip	yes
CENPT_LS038	chr16:67832545|67833750:-	CENPT	centromere protein T	protein coding gene	no	ENST00000569862.5;ENST00000562787.5;ENST00000562513.6;ENST00000436104.6;ENST00000565157.5;ENST00000440851.6;ENST00000626059.2;ENST00000563885.5;ENST00000564817.5;ENST00000566758.5;ENST00000564128.1;ENST00000562462.5;ENST00000565713.5;ENST00000568069.5;ENST00000564538.5;ENST00000566067.5;ENST00000562338.1;ENST00000562483.1;ENST00000568564.1;ENST00000561593.5;ENST00000565114.5	6.515	3.742	67.517	0.977(9357)	0.984(691)	0.979(17020)	non tumor-specific	nAS	yes
UNC45B_LS004	chr17:35149009|35150048:+	UNC45B	unc-45 myosin chaperone B	protein coding gene	no	ENST00000268876.9;ENST00000394570.6;ENST00000591048.2	4.208	21.327	2.393	0.026(248)	0.09(63)	0.249(4320)	non tumor-specific	nAS	yes
TCF4_LS068	chr18:55585352|55589297:-	TCF4	transcription factor 7 like 2	protein coding gene	yes	ENST00000636751.2;ENST00000537578.5;ENST00000568740.5;ENST00000565018.6	0.610	0.566	1.256	0.167(1604)	0.235(165)	0.549(9546)	non tumor-specific	exon_skip	yes
UN_LINC00221_UP_LS0365	chr14:106349519|106367630:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	43.876	3.206	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
ULK4_LS038	chr3:41918540|41919717:-	ULK4	unc-51 like kinase 4	protein coding gene	no	ENST00000301831.8;ENST00000420927.5	2.958	1.254	2.180	0.472(4521)	0.54(379)	0.841(14620)	non tumor-specific	alt_3prime	yes
AC092821.3_LS024	chr12:9655303|9655873:+	AC092821.3	-	lncRNA gene	no	ENST00000611052.4	0.249	0.128	0.734	0.149(1429)	0.081(57)	0.152(2648)	non tumor-specific	nAS	yes
UN_SNX18P23_UP_LS0012	chr4:49237221|49242709:-	SNX18P23	sorting nexin 18 pseudogene 23	pseudogene	no	.	2.178	0.101	0.000	0.04(380)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KCNJ6_LS0020	chr21:37764158|37840428:+	KCNJ6	potassium inwardly rectifying channel subfamily J member 6	protein coding gene	no	.	13.692	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RYR3_LS047	chr15:33724176|33726386:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000635790.1	2.449	1.191	1.921	0.024(233)	0.061(43)	0.53(9215)	non tumor-specific	nAS	yes
CROCC_LS006	chr1:16922798|16929846:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000467938.5	0.306	0.115	0.672	0.154(1476)	0.117(82)	0.038(661)	non tumor-specific	exon_skip	yes
FBXO31_LS009	chr16:87347250|87360295:-	FBXO31	F-box protein 31	protein coding gene	yes	ENST00000311635.11;ENST00000618298.6;ENST00000561664.1	24.051	18.567	18.848	0.965(9244)	0.993(697)	0.976(16972)	non tumor-specific	exon_skip	yes
COLGALT1_LS007	chr19:17568713|17571870:+	COLGALT1	collagen beta(1-O)galactosyltransferase 1	protein coding gene	no	ENST00000601354.1	0.155	0.561	3.854	0.676(6478)	0.593(416)	0.918(15952)	non tumor-specific	alt_3prime;exon_skip	yes
ARPP21_LS003	chr3:35641052|35679787:+	ARPP21	cAMP regulated phosphoprotein 21	protein coding gene	no	ENST00000444190.5	0.457	0.000	0.843	0.019(186)	0(0)	0.008(140)	non tumor-specific	exon_skip	yes
UGDH-AS1_LS004	chr4:39589719|39592673:+	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	ENST00000504032.1	0.591	0.254	0.643	0.009(85)	0.017(12)	0.009(150)	non tumor-specific	nAS	yes
UTP6_LS005	chr17:31866715|31868046:-	UTP6	UTP6 small subunit processome component	protein coding gene	no	ENST00000581012.6	0.542	0.222	4.385	0.863(8268)	0.842(591)	0.956(16612)	non tumor-specific	exon_skip	yes
EPS15L1_LS015	chr19:16395467|16402315:-	EPS15L1	epidermal growth factor receptor pathway substrate 15 like 1	protein coding gene	no	ENST00000594975.5	0.178	0.215	0.802	0.819(7851)	0.85(597)	0.399(6933)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BCAT2_LS0022	chr19:48807399|48807969:+	BCAT2	branched chain amino acid transaminase 2	protein coding gene	no	.	4.072	6.182	0.000	0.089(848)	0.235(165)	0(0)	non tumor-specific	nAS	no
RGS20_LS014	chr8:53881084|53939579:+	RGS20	regulator of G protein signaling 20	protein coding gene	no	.;.	0.964	0.094	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP003032.2_LS001	chr11:78016025|78016121:+	AP003032.2	-	lncRNA gene	no	ENST00000533697.1	1.441	1.039	1.374	0.725(6950)	0.849(596)	0.504(8763)	non tumor-specific	nAS	yes
TUBB8_LS003	chr10:48114|48615:-	TUBB8	tubulin beta 8 class VIII	protein coding gene	no	ENST00000568584.5;ENST00000562809.1;ENST00000563456.1	1.257	0.090	0.805	0.047(447)	0.019(13)	0.13(2265)	non tumor-specific	alt_3prime;alt_5prime	yes
DGLUCY_LS034	chr14:91160397|91165247:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000523837.5	0.621	0.355	0.658	0.006(57)	0.004(3)	0.053(918)	non tumor-specific	exon_skip	yes
COL7A1_LS088	chr3:48582513|48582609:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000487017.5;ENST00000328333.12	10.925	2.510	7.676	0.598(5731)	0.42(295)	0.919(15976)	non tumor-specific	alt_3prime	yes
ZNF517_LS007	chr8:144802947|144804125:+	ZNF517	zinc finger protein 517	protein coding gene	no	ENST00000526178.1;ENST00000529429.5;ENST00000526178.1;ENST00000529429.5	1.059	0.695	1.640	0.726(6959)	0.751(527)	0.793(13776)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_RAB25_LS0023	chr1:156068414|156070206:-	RAB25	RAB25, member RAS oncogene family	protein coding gene	yes	.	2.396	1.721	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPPL3_LS0039	chr12:120810886|120866519:-	SPPL3	signal peptide peptidase like 3	protein coding gene	no	.	2.026	0.277	0.000	0.011(103)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
DENND4A_LS036	chr15:65732818|65737707:-	DENND4A	DENN domain containing 4A	protein coding gene	no	ENST00000443035.7;ENST00000431932.6;ENST00000635620.1;ENST00000564674.5;ENST00000568515.1	8.226	5.341	5.255	0.759(7276)	0.936(657)	0.941(16350)	non tumor-specific	alt_3prime	yes
UN_BPIFA2_LS0013	chr20:33177954|33178147:+	BPIFA2	BPI fold containing family A member 2	protein coding gene	no	.	1.140	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
L3MBTL1_LS043	chr20:43540308|43548147:+	L3MBTL1	L3MBTL histone methyl-lysine binding protein 1	protein coding gene	no	ENST00000471977.2	0.382	0.115	0.921	0.293(2812)	0.251(176)	0.434(7541)	non tumor-specific	exon_skip	yes
TRAV22_LS001	chr14:22070741|22070930:+	TRAV22	T cell receptor alpha variable 22	no	no	ENST00000390450.3	0.968	0.337	0.842	0.361(3455)	0.419(294)	0.194(3370)	non tumor-specific	nAS	yes
GFI1_LS007	chr1:92483586|92484446:-	GFI1	growth factor independent 1 transcriptional repressor	protein coding gene	yes	ENST00000483490.1	0.420	0.086	0.822	0.205(1962)	0.172(121)	0.119(2071)	non tumor-specific	alt_5prime	yes
TAC4_LS005	chr17:49838673|49841552:-	TAC4	tachykinin precursor 4	protein coding gene	no	ENST00000326219.5;ENST00000326219.5;ENST00000326219.5	2.566	0.115	0.792	0.051(485)	0.01(7)	0.063(1095)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CAPN9_LS005	chr1:230762786|230767541:+	CAPN9	calpain 9	protein coding gene	no	ENST00000271971.6;ENST00000366666.6;ENST00000354537.1	4.739	6.442	1.396	0.254(2438)	0.385(270)	0.303(5267)	non tumor-specific	nAS	yes
LHCGR_LS009	chr2:48721779|48723456:-	LHCGR	luteinizing hormone/choriogonadotropin receptor	protein coding gene	no	ENST00000428232.2	1.186	0.105	1.353	0.02(195)	0.074(52)	0.235(4087)	non tumor-specific	exon_skip	yes
DLAT_LS007	chr11:112028945|112039244:+	DLAT	dihydrolipoamide S-acetyltransferase	protein coding gene	no	ENST00000393051.5	0.489	0.311	0.724	0.619(5926)	0.721(506)	0.209(3633)	non tumor-specific	exon_skip	yes
PARD6G_LS003	chr18:80183150|80202710:-	PARD6G	par-6 family cell polarity regulator gamma	protein coding gene	no	ENST00000470488.2	1.448	0.574	1.262	0.718(6880)	0.667(468)	0.497(8644)	non tumor-specific	exon_skip	yes
ZRANB2-AS1_LS002	chr1:71058736|71066766:+	ZRANB2-AS1	ZRANB2 antisense RNA 1	lncRNA gene	no	ENST00000426999.1	0.125	0.039	0.652	0.161(1540)	0.141(99)	0.01(170)	non tumor-specific	nAS	yes
CA2_LS003	chr8:85465469|85473693:+	CA2	carbonic anhydrase 2	protein coding gene	no	ENST00000285379.9;ENST00000520996.5;ENST00000518231.1	168.525	455.656	21.433	0.964(9235)	0.969(680)	0.945(16430)	non tumor-specific	exon_skip	yes
UN_VPS13D_LS0083	chr1:12411979|12412188:-	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	.	9.581	0.305	0.000	0.002(20)	0.009(6)	0(0)	non tumor-specific	nAS	no
BOD1_LS001	chr5:173608292|173609238:-	BOD1	biorientation of chromosomes in cell division 1	protein coding gene	no	ENST00000311086.8;ENST00000477985.1;ENST00000518658.1	104.134	52.903	79.678	0.951(9114)	0.956(671)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MAK_LS010	chr6:10791847|10795998:-	MAK	male germ cell associated kinase	protein coding gene	no	ENST00000313243.6;ENST00000474039.5;ENST00000354489.6;ENST00000536370.5;ENST00000538030.2	4.417	1.538	0.925	0.072(694)	0.134(94)	0.232(4026)	non tumor-specific	exon_skip	yes
LRRIQ3_LS005	chr1:74074790|74109394:-	LRRIQ3	leucine rich repeats and IQ motif containing 3	protein coding gene	no	ENST00000395089.5;ENST00000354431.8	1.668	0.560	0.826	0.003(31)	0.037(26)	0.068(1178)	non tumor-specific	exon_skip	yes
FAM117A_LS003	chr17:49717714|49717968:-	FAM117A	family with sequence similarity 117 member A	protein coding gene	no	ENST00000503573.5	0.056	0.154	0.660	0.104(995)	0.15(105)	0.029(506)	non tumor-specific	exon_skip	yes
NSMAF_LS016	chr8:58595659|58597387:-	NSMAF	neutral sphingomyelinase activation associated factor	protein coding gene	no	ENST00000038176.7;ENST00000649465.1;ENST00000427130.6;ENST00000523106.5	21.881	12.090	35.762	0.977(9362)	0.981(689)	0.979(17013)	non tumor-specific	nAS	yes
UN_AGO3_LS0021	chr1:35973511|36008690:+	AGO3	argonaute RISC catalytic component 3	protein coding gene	no	.	1.031	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
REPS1_LS024	chr6:138921124|138929977:-	REPS1	RALBP1 associated Eps domain containing 1	protein coding gene	no	ENST00000367663.8;ENST00000529597.5;ENST00000445570.5;ENST00000409812.6;ENST00000415951.6;ENST00000414243.1;ENST00000367663.8;ENST00000529597.5;ENST00000445570.5;ENST00000409812.6;ENST00000415951.6;ENST00000414243.1	6.976	10.859	17.695	0.97(9290)	0.99(695)	0.977(16989)	non tumor-specific	alt_5prime;exon_skip	yes
GIT1_LS007	chr17:29575470|29576078:-	GIT1	GIT ArfGAP 1	protein coding gene	no	ENST00000578670.5;ENST00000578670.5	0.692	0.327	0.865	0.724(6941)	0.624(438)	0.223(3871)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CSMD1_LS078	chr8:3754042|3997903:-	CSMD1	CUB and Sushi multiple domains 1	protein coding gene	yes	ENST00000400186.7;ENST00000602723.5;ENST00000635120.1;ENST00000520002.5;ENST00000602557.5	4.533	0.482	1.337	0.03(286)	0.007(5)	0.115(2005)	non tumor-specific	nAS	yes
MST1P2_LS016	chr1:16649713|16649810:+	MST1P2	macrophage stimulating 1 pseudogene 2	pseudogene	no	ENST00000457982.3	8.691	7.609	9.336	0.311(2979)	0.37(260)	0.913(15870)	non tumor-specific	nAS	yes
IGKV1-16_LS001	chr2:89100154|89100280:-	IGKV1-16	immunoglobulin kappa variable 1-16	no	no	ENST00000479981.1	17.628	24.875	4.901	0.757(7253)	0.838(588)	0.49(8510)	non tumor-specific	nAS	yes
UN_BICDL2_LS0018	chr16:3030607|3030696:-	BICDL2	BICD family like cargo adaptor 2	protein coding gene	no	.	3.097	1.377	0.000	0.007(70)	0.01(7)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MYO6_LS002	chr6:75749423|75817501:+	MYO6	myosin VI	protein coding gene	no	ENST00000369981.7;ENST00000369985.8;ENST00000369977.7	2.777	3.026	6.030	0.696(6666)	0.845(593)	0.917(15941)	non tumor-specific	alt_5prime;exon_skip	yes
LIPJ_LS006	chr10:88594144|88594667:+	LIPJ	lipase family member J	protein coding gene	no	ENST00000371939.7	1.405	0.296	0.665	0(2)	0.001(1)	0.055(957)	non tumor-specific	nAS	yes
UN_TMEM259_LS0089	chr19:1014473|1020395:-	TMEM259	transmembrane protein 259	protein coding gene	no	.	10.380	2.320	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_IGHD3-3_UP_LS0001	chr14:105914404|105939764:-	IGHD3-3	immunoglobulin heavy diversity 3-3	no	no	.	13.957	0.294	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CSTF1_LS0006	chr20:56393281|56395521:+	CSTF1	cleavage stimulation factor subunit 1	protein coding gene	no	.	1.123	0.712	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHPT1_LS022	chr12:101730636|101743570:+	CHPT1	choline phosphotransferase 1	protein coding gene	no	.;.	0.589	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RASGRP2_LS027	chr11:64742937|64744030:-	RASGRP2	RAS guanyl releasing protein 2	protein coding gene	no	ENST00000419843.1	0.225	0.210	0.760	0.116(1107)	0.121(85)	0.153(2662)	non tumor-specific	alt_5prime;intron_retention	yes
THPO_LS010	chr3:184376404|184378075:-	THPO	thrombopoietin	protein coding gene	no	ENST00000204615.11;ENST00000647395.1;ENST00000649095.1;ENST00000445696.6;ENST00000645603.2	1.508	1.213	1.601	0.24(2304)	0.274(192)	0.681(11830)	non tumor-specific	alt_3prime;exon_skip	yes
SMG1P5_LS013	chr16:30279794|30279884:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	ENST00000529428.5	0.225	0.238	0.665	0.223(2132)	0.239(168)	0.051(889)	non tumor-specific	nAS	yes
ANKRD36BP2_LS005	chr2:88776573|88778202:+	ANKRD36BP2	ankyrin repeat domain 36B pseudogene 2	pseudogene	no	ENST00000421951.5	0.228	0.249	1.039	0.168(1609)	0.171(120)	0.198(3433)	non tumor-specific	nAS	yes
DCST2_LS016	chr1:155031234|155031574:-	DCST2	DC-STAMP domain containing 2	protein coding gene	no	ENST00000485982.5;ENST00000368424.3	1.601	0.207	1.053	0.014(133)	0.009(6)	0.372(6471)	non tumor-specific	alt_5prime;exon_skip	yes
TMF1_LS016	chr3:69042912|69043750:-	TMF1	TATA element modulatory factor 1	protein coding gene	no	ENST00000398559.6;ENST00000646304.1;ENST00000646708.1;ENST00000488010.5	27.595	21.670	20.394	0.961(9203)	0.987(693)	0.977(16982)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TRAPPC6B_LS0023	chr14:39168213|39170015:-	TRAPPC6B	trafficking protein particle complex 6B	protein coding gene	no	.	0.983	0.041	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
FAM217A_LS003	chr6:4073342|4073433:-	FAM217A	family with sequence similarity 217 member A	protein coding gene	no	ENST00000274673.7;ENST00000380188.2;ENST00000639338.1;ENST00000498677.5;ENST00000492651.5	1.027	0.411	0.837	0(3)	0.007(5)	0.041(709)	non tumor-specific	nAS	yes
ACOX2_LS006	chr3:58517423|58522496:-	ACOX2	acyl-CoA oxidase 2	protein coding gene	no	ENST00000481527.5;ENST00000467738.1;ENST00000459701.6;ENST00000302819.9	32.112	48.442	26.325	0.884(8473)	0.994(698)	0.964(16756)	non tumor-specific	exon_skip	yes
AP003080.1_LS001	chr11:101585124|101585725:+	AP003080.1	-	pseudogene	no	ENST00000527374.1	0.250	0.073	0.694	0.008(72)	0.028(20)	0.034(592)	non tumor-specific	nAS	yes
UN_RC3H2_LS0061	chr9:122890545|122892915:-	RC3H2	ring finger and CCCH-type domains 2	protein coding gene	no	.	3.015	0.740	0.000	0.019(181)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NUCB1_LS0069	chr19:48921243|48921301:+	NUCB1	nucleobindin 1	protein coding gene	no	.	28.088	10.478	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
AKNA_LS011	chr9:114346784|114347724:-	AKNA	AT-hook transcription factor	protein coding gene	no	ENST00000307564.8;ENST00000374088.7;ENST00000374079.8;ENST00000223791.7;ENST00000374075.9	22.254	12.209	21.996	0.931(8922)	0.959(673)	0.977(16982)	non tumor-specific	alt_3prime;mutex_exons	yes
RPL29P30_LS001	chr15:70797131|70797284:-	RPL29P30	ribosomal protein L29 pseudogene 30	pseudogene	no	ENST00000496414.1	0.463	0.000	0.688	0(1)	0(0)	0.001(12)	non tumor-specific	nAS	yes
UN_RNF185_LS0029	chr22:31182894|31187047:+	RNF185	ring finger protein 185	protein coding gene	no	.	1.438	0.660	0.000	0.026(253)	0.028(20)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC074386.1_LS0026	chr7:144294281|144299366:+	AC074386.1	-	lncRNA gene	no	.	0.828	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PTCD2_LS013	chr5:72331375|72335018:+	PTCD2	pentatricopeptide repeat domain 2	protein coding gene	no	ENST00000380639.9;ENST00000511752.5;ENST00000486995.5;ENST00000308077.9;ENST00000493283.5	7.268	4.679	4.817	0.882(8454)	0.937(658)	0.933(16217)	non tumor-specific	exon_skip	yes
MAZ_LS005	chr16:29807066|29810110:+	MAZ	MYC associated zinc finger protein	protein coding gene	no	ENST00000563402.1	0.036	0.123	0.665	0.039(377)	0.014(10)	0.01(174)	non tumor-specific	nAS	yes
CDON_LS024	chr11:126023537|126063226:-	CDON	cell adhesion associated, oncogene regulated	protein coding gene	yes	ENST00000392693.7;ENST00000263577.11;ENST00000531586.5	0.037	0.007	0.670	0.093(890)	0.152(107)	0.02(354)	non tumor-specific	alt_5prime	yes
AC025575.1_LS002	chr12:71046741|71069278:-	AC025575.1	-	lncRNA gene	no	ENST00000548497.1	0.837	0.000	0.669	0.001(5)	0(0)	0.003(48)	non tumor-specific	nAS	yes
UN_AL450326.2_UP_LS0009	chr10:43496530|43501807:+	AL450326.2	-	pseudogene	no	.	3.853	0.306	0.000	0.013(121)	0.007(5)	0(0)	non tumor-specific	nAS	no
GAPDH_LS002	chr12:6534661|6534810:+	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	ENST00000396861.5	2.784	1.735	3.553	0.977(9363)	0.98(688)	0.912(15851)	non tumor-specific	nAS	yes
ARCN1_LS005	chr11:118581401|118601636:+	ARCN1	archain 1	protein coding gene	no	ENST00000534182.2	0.065	0.003	0.589	0.015(140)	0.011(8)	0.005(90)	non tumor-specific	nAS	yes
UN_ZFYVE16_LS0040	chr5:80474835|80477219:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	.	1.275	0.001	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ZNF879_LS0001	chr5:179023904|179024713:+	ZNF879	zinc finger protein 879	protein coding gene	no	.	0.143	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C17orf49_LS0011	chr17:7015862|7016493:+	C17orf49	chromosome 17 open reading frame 49	protein coding gene	no	.	16.630	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
PWRN2_LS002	chr15:24163282|24169773:-	PWRN2	Prader-Willi region non-protein coding RNA 2	lncRNA gene	no	ENST00000566245.1	0.245	0.064	0.711	0.001(5)	0.001(1)	0.004(66)	non tumor-specific	nAS	yes
UN_ZNF559-ZNF177_LS0007	chr19:9331645|9337796:+	ZNF559-ZNF177	ZNF559-ZNF177 readthrough	protein coding gene	no	.	0.696	0.424	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_UP_LS0434	chr14:106373929|106421942:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	32.596	21.631	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SDHA_LS012	chr5:227756|228185:+	SDHA	succinate dehydrogenase complex flavoprotein subunit A	protein coding gene	yes	ENST00000514233.1	0.095	0.072	0.702	0.82(7858)	0.818(574)	0.048(842)	non tumor-specific	nAS	yes
UN_CCDC26_LS0021	chr8:128745400|128760766:-	CCDC26	CCDC26 long non-coding RNA	lncRNA gene	no	.	1.271	0.277	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
ANO10_LS030	chr3:43605863|43691517:-	ANO10	anoctamin 10	protein coding gene	no	ENST00000413397.5	0.136	0.106	0.723	0.391(3745)	0.583(409)	0.182(3169)	non tumor-specific	exon_skip	yes
STARD3NL_LS006	chr7:38178420|38202070:+	STARD3NL	STARD3 N-terminal like	protein coding gene	no	ENST00000440144.5	0.017	0.010	0.640	0.096(924)	0.075(53)	0.072(1256)	non tumor-specific	exon_skip;mutex_exons	yes
CSNK1A1_LS026	chr5:149513209|149520290:-	CSNK1A1	casein kinase 1 alpha 1	protein coding gene	yes	ENST00000261798.9;ENST00000377843.6;ENST00000504676.5;ENST00000261798.9;ENST00000377843.6;ENST00000504676.5	156.539	108.881	80.548	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_BOK_LS0170	chr2:241573015|241573096:+	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	6.604	6.668	0.000	0.176(1684)	0.274(192)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_EGFL7_LS0005	chr9:136663108|136663520:+	EGFL7	EGF like domain multiple 7	protein coding gene	no	.	0.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_GNG14_UP_LS0002	chr19:12658522|12668172:+	GNG14	G protein subunit gamma 14	protein coding gene	no	.	2.416	0.567	0.000	0.028(269)	0.013(9)	0(0)	non tumor-specific	nAS	no
QPRT_LS010	chr16:29694806|29696996:+	QPRT	quinolinate phosphoribosyltransferase	protein coding gene	no	.;.	9.008	0.165	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RASGEF1B_LS003	chr4:81433963|81434639:-	RASGEF1B	RasGEF domain family member 1B	protein coding gene	no	ENST00000509081.5;ENST00000264400.6;ENST00000638048.1;ENST00000335927.11	10.698	13.403	9.142	0.932(8932)	0.989(694)	0.937(16285)	non tumor-specific	exon_skip	yes
UN_BX842568.2_UP_LS0005	chrX:36964365|36985099:-	BX842568.2	-	pseudogene	no	.	1.786	0.348	0.000	0.006(62)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CBFA2T2_LS0003	chr20:33490301|33550641:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	.	0.801	0.278	0.000	0.098(938)	0.094(66)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GABPB1_LS0039	chr15:50347574|50353878:-	GABPB1	GA binding protein transcription factor subunit beta 1	protein coding gene	no	.	3.022	0.505	0.000	0.017(160)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_SLC22A5_LS0012	chr5:132389021|132390325:+	SLC22A5	solute carrier family 22 member 5	protein coding gene	no	.	3.528	0.931	0.000	0.01(94)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
DIAPH2_LS020	chrX:97073042|97075167:+	DIAPH2	diaphanous related formin 2	protein coding gene	no	ENST00000355827.8;ENST00000373061.7;ENST00000373049.8;ENST00000324765.12;ENST00000373054.5	17.674	10.467	13.663	0.928(8890)	0.989(694)	0.956(16614)	non tumor-specific	nAS	yes
UN_MOCS1P1_UP_LS0001	chr16:48243565|48252131:+	MOCS1P1	molybdenum cofactor synthesis 1 pseudogene 1	pseudogene	no	.	0.655	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FLYWCH1_LS0060	chr16:2940092|2948699:+	FLYWCH1	FLYWCH-type zinc finger 1	protein coding gene	no	.	14.842	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ST7L_LS011	chr1:112550693|112576986:-	ST7L	suppression of tumorigenicity 7 like	protein coding gene	no	ENST00000480988.5	0.023	0.001	0.942	0.043(415)	0.031(22)	0.452(7853)	non tumor-specific	exon_skip	yes
DISP2_LS001	chr15:40358440|40363625:+	DISP2	dispatched RND transporter family member 2	protein coding gene	no	ENST00000267889.4	0.491	0.351	1.388	0.283(2708)	0.201(141)	0.298(5175)	non tumor-specific	nAS	yes
TMEM237_LS010	chr2:201629852|201630955:-	TMEM237	transmembrane protein 237	protein coding gene	no	ENST00000466839.5	0.201	0.067	0.869	0.08(768)	0.114(80)	0.186(3237)	non tumor-specific	nAS	yes
UN_NBEAL1_LS0049	chr2:203151589|203166149:+	NBEAL1	neurobeachin like 1	protein coding gene	no	.	0.712	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
RIPOR3_LS004	chr20:50592546|50593035:-	RIPOR3	RIPOR family member 3	protein coding gene	no	ENST00000327979.6;ENST00000045083.6;ENST00000488529.5;ENST00000482129.1	3.141	4.511	17.259	0.65(6229)	0.818(574)	0.952(16552)	non tumor-specific	alt_3prime	yes
UN_AC068446.3_UP_LS0006	chr15:21270924|21273133:-	AC068446.3	-	pseudogene	no	.	7.285	0.220	0.000	0.017(161)	0.001(1)	0(0)	non tumor-specific	nAS	no
CASC19_LS026	chr8:127187884|127188045:-	CASC19	cancer susceptibility 19	lncRNA gene	no	ENST00000641912.1;ENST00000641421.1;ENST00000641701.1;ENST00000641588.1;ENST00000641706.1;ENST00000641013.1;ENST00000641262.1;ENST00000641174.1;ENST00000641615.1;ENST00000641510.1;ENST00000641578.1;ENST00000642010.1;ENST00000641487.1;ENST00000641604.1;ENST00000641056.1;ENST00000642126.1;ENST00000641365.1;ENST00000641746.1;ENST00000641298.1;ENST00000641001.1;ENST00000641828.1;ENST00000642134.1;ENST00000641674.1;ENST00000641547.1;ENST00000641029.1;ENST00000641696.1;ENST00000641934.1;ENST00000641681.1;ENST00000641867.1;ENST00000641418.1;ENST00000641733.1;ENST00000641964.1;ENST00000642142.1;ENST00000641625.1;ENST00000641171.1;ENST00000641880.1;ENST00000641414.1;ENST00000641584.1;ENST00000642118.1;ENST00000641392.1;ENST00000642082.1;ENST00000641162.1;ENST00000641106.1;ENST00000641704.1;ENST00000641309.1;ENST00000521815.2;ENST00000641488.1;ENST00000641218.1;ENST00000642018.1;ENST00000641153.1;ENST00000641786.1;ENST00000641968.1;ENST00000641523.1;ENST00000641514.1;ENST00000641060.1	2.484	0.341	1.039	0.124(1189)	0.044(31)	0.098(1712)	non tumor-specific	nAS	yes
UN_THSD4_LS0190	chr15:71782176|71782206:-	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	.	2.324	0.621	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
CYP3A5_LS019	chr7:99672679|99672784:-	CYP3A5	cytochrome P450 family 3 subfamily A member 5	protein coding gene	no	ENST00000461920.5;ENST00000463364.5;ENST00000481825.5;ENST00000466061.5;ENST00000469622.5	3.361	4.001	5.788	0.324(3108)	0.459(322)	0.489(8505)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RF00019_UP_LS0827	chr16:173557|177309:+	RF00019	-	small non-coding RNA gene	no	.	40.363	27.426	0.000	0.013(123)	0.017(12)	0(0)	non tumor-specific	nAS	no
MPRIP_LS020	chr17:17147387|17150144:+	MPRIP	myosin phosphatase Rho interacting protein	protein coding gene	no	ENST00000395811.9;ENST00000341712.8;ENST00000584067.5;ENST00000395811.9;ENST00000341712.8;ENST00000584067.5	86.936	73.009	103.034	0.983(9417)	0.994(698)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TSC2_LS095	chr16:2088325|2088446:+	TSC2	TSC complex subunit 2	protein coding gene	yes	ENST00000219476.8;ENST00000643088.1;ENST00000643946.1;ENST00000382538.10;ENST00000642936.1;ENST00000401874.7;ENST00000644335.1;ENST00000646388.1;ENST00000439673.6;ENST00000350773.9;ENST00000644329.1;ENST00000439117.6;ENST00000644043.1;ENST00000642797.1;ENST00000642561.1;ENST00000568454.6;ENST00000644399.1;ENST00000646634.1;ENST00000642365.1;ENST00000645024.1;ENST00000497886.5;ENST00000647042.1;ENST00000646674.1;ENST00000647180.1;ENST00000643426.1;ENST00000569930.2;ENST00000569110.2;ENST00000642791.1	95.836	37.266	132.499	0.981(9398)	0.987(693)	0.979(17021)	non tumor-specific	alt_3prime	yes
MRPS27_LS029	chr5:72314158|72320234:-	MRPS27	mitochondrial ribosomal protein S27	protein coding gene	no	ENST00000506957.1	0.076	0.000	0.616	0(2)	0(0)	0.007(119)	non tumor-specific	alt_5prime	yes
UN_TAGLN_LS0029	chr11:117203474|117204340:-	TAGLN	transgelin	protein coding gene	yes	.	24.320	26.611	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GK5_LS0024	chr3:142177576|142182923:-	GK5	glycerol kinase 5	protein coding gene	no	.	0.097	0.165	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MOV10_LS0027	chr1:112696251|112696630:+	MOV10	Mov10 RISC complex RNA helicase	protein coding gene	no	.	4.707	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PCBD1_LS0014	chr10:70885929|70886621:-	PCBD1	pterin-4 alpha-carbinolamine dehydratase 1	protein coding gene	no	.	3.140	1.651	0.000	0.002(15)	0.04(28)	0(0)	non tumor-specific	nAS	no
ARHGEF7_LS010	chr13:111186990|111205289:+	ARHGEF7	Rho guanine nucleotide exchange factor 7	protein coding gene	no	ENST00000426073.6	0.070	0.090	0.894	0.011(103)	0.021(15)	0.234(4068)	non tumor-specific	exon_skip	yes
UN_ZC3H7A_LS0008	chr16:11762764|11763478:-	ZC3H7A	zinc finger CCCH-type containing 7A	protein coding gene	no	.	9.854	3.166	0.000	0.006(55)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL451069.2_LS0003	chr10:132419206|132420044:+	AL451069.2	-	lncRNA gene	no	.	5.645	0.428	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC064875.1_UP_LS0029	chr2:13523355|13532831:-	AC064875.1	-	lncRNA gene	no	.	12.339	0.067	0.000	0.019(185)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC132008.2_LS016	chr3:197624197|197624472:-	AC132008.2	-	pseudogene	no	ENST00000414207.5	1.041	0.480	2.495	0.347(3324)	0.338(237)	0.834(14496)	non tumor-specific	nAS	yes
UN_SLC25A6_UP_LS0002	chrX:1394456|1394482:-	SLC25A6	solute carrier family 25 member 6	protein coding gene	no	.	2.965	0.767	0.000	0.016(155)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_AL357075.2_UP_LS0002	chr6:154510962|154512100:+	AL357075.2	-	pseudogene	no	.	2.320	0.216	0.000	0.019(184)	0.006(4)	0(0)	non tumor-specific	nAS	no
FAR2P4_LS011	chr2:131303104|131308894:+	FAR2P4	fatty acyl-CoA reductase 2 pseudogene 4	pseudogene	no	ENST00000425399.1	8.593	0.227	0.956	0.122(1168)	0.034(24)	0.11(1917)	non tumor-specific	nAS	yes
UN_PRPH_UP_LS0069	chr12:49185796|49265118:+	PRPH	peripherin	protein coding gene	no	.	6.517	1.759	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_UBB_LS0168	chr17:16382117|16382253:-	UBB	ubiquitin B	protein coding gene	no	.	58.239	4.326	0.000	0.007(70)	0.006(4)	0(0)	non tumor-specific	nAS	no
KIAA0319L_LS015	chr1:35451776|35453557:-	KIAA0319L	KIAA0319 like	protein coding gene	no	ENST00000325722.7;ENST00000373266.8;ENST00000426982.6;ENST00000485551.5;ENST00000492544.1;ENST00000440579.5	59.203	49.441	28.436	0.987(9452)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02246_LS0003	chr21:14837823|14857542:-	LINC02246	long intergenic non-protein coding RNA 2246	lncRNA gene	no	.	3.535	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FAM149B1_LS023	chr10:73239384|73240946:+	FAM149B1	family with sequence similarity 149 member B1	protein coding gene	no	ENST00000242505.10;ENST00000445951.5;ENST00000468462.1	17.059	14.422	17.962	0.985(9433)	0.989(694)	0.978(17002)	non tumor-specific	alt_5prime	yes
SLC25A10_LS005	chr17:81715592|81715693:+	SLC25A10	solute carrier family 25 member 10	protein coding gene	no	ENST00000545862.5;ENST00000574129.5;ENST00000331531.9;ENST00000350690.9;ENST00000574884.5	54.037	37.164	15.044	0.991(9494)	0.993(697)	0.97(16869)	non tumor-specific	alt_3prime	yes
UN_AC046144.1_UP_LS0052	chr3:105034215|105037620:-	AC046144.1	-	pseudogene	no	.	5.432	0.639	0.000	0.003(26)	0.01(7)	0(0)	non tumor-specific	nAS	no
CIAO2A_LS009	chr15:64088851|64090198:-	CIAO2A	cytosolic iron-sulfur assembly component 2A	protein coding gene	no	ENST00000559705.1	0.086	2.281	0.835	0.416(3981)	0.379(266)	0.349(6059)	non tumor-specific	exon_skip	yes
UN_TENM4_LS0030	chr11:78716052|78722201:+	TENM4	teneurin transmembrane protein 4	protein coding gene	no	.	2.263	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLK2_LS0015	chr1:155266895|155267994:-	CLK2	CDC like kinase 2	protein coding gene	no	.	9.041	1.565	0.000	0.031(298)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
MGC32805_LS004	chr5:122444913|122476788:-	MGC32805	-	lncRNA gene	no	ENST00000505546.1	0.280	0.151	0.672	0.049(470)	0.117(82)	0.011(193)	non tumor-specific	nAS	yes
PTPN6_LS041	chr12:6960945|6961126:+	PTPN6	protein tyrosine phosphatase non-receptor type 6	protein coding gene	yes	ENST00000399448.5;ENST00000318974.13;ENST00000456013.5;ENST00000416215.6;ENST00000539029.5;ENST00000537533.1	111.902	40.886	31.916	0.94(9004)	0.962(675)	0.963(16742)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_COMMD5_UP_LS0011	chr8:144870788|144876537:-	COMMD5	COMM domain containing 5	protein coding gene	no	.	1.294	0.135	0.000	0.025(239)	0.041(29)	0(0)	non tumor-specific	exon_skip	no
UN_CSK_LS0057	chr15:74802647|74802692:-	CSK	C-terminal Src kinase	protein coding gene	no	.	3.660	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC130343.1_UP_LS0007	chr17:1776729|1781215:-	AC130343.1	-	lncRNA gene	no	.	5.393	2.607	0.000	0.016(151)	0.03(21)	0(0)	non tumor-specific	nAS	no
LINC02377_LS002	chr4:131486074|131522920:+	LINC02377	long intergenic non-protein coding RNA 2377	lncRNA gene	no	ENST00000505436.1	0.134	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_FLG-AS1_LS0030	chr1:152301833|152302999:+	FLG-AS1	FLG antisense RNA 1	lncRNA gene	no	.	1.269	0.196	0.000	0.004(43)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC245060.5_UP_LS0264	chr22:22410220|22835095:-	AC245060.5	-	lncRNA gene	no	.	38.061	10.430	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
PDLIM2_LS008	chr8:22580411|22580603:+	PDLIM2	PDZ and LIM domain 2	protein coding gene	no	ENST00000429812.5	0.463	0.215	0.802	0.222(2125)	0.333(234)	0.131(2281)	non tumor-specific	alt_5prime;intron_retention	yes
CLIC5_LS014	chr6:45932798|45934224:-	CLIC5	chloride intracellular channel 6	protein coding gene	no	ENST00000476852.1	4.863	0.000	0.690	0(2)	0(0)	0.001(11)	non tumor-specific	intron_retention	yes
OR2A20P_LS003	chr7:144253588|144254434:-	OR2A20P	olfactory receptor family 2 subfamily A member 20 pseudogene	pseudogene	no	ENST00000641121.1	2.726	1.186	0.000	0.024(232)	0.056(39)	0(0)	non tumor-specific	nAS	yes
UN_SCAF8_LS0003	chr6:154733550|154733847:+	SCAF8	SR-related CTD associated factor 8	protein coding gene	no	.	0.573	0.136	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
MUC19_LS098	chr12:40520968|40521474:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000398702.7	0.551	0.170	0.769	0.007(64)	0.004(3)	0.044(766)	non tumor-specific	nAS	yes
UN_EIF2D_LS0023	chr1:206611374|206612122:-	EIF2D	eukaryotic translation initiation factor 2D	protein coding gene	no	.	5.300	1.854	0.000	0.02(195)	0.028(20)	0(0)	non tumor-specific	alt_5prime	no
MORF4L1_LS018	chr15:78880579|78886141:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	ENST00000379535.8;ENST00000559697.5;ENST00000426013.6;ENST00000557961.5;ENST00000559930.5;ENST00000558746.5;ENST00000558893.5;ENST00000558830.5;ENST00000558522.5;ENST00000559619.5;ENST00000559345.5;ENST00000561171.5;ENST00000559258.5;ENST00000559690.5;ENST00000559158.5;ENST00000560422.5;ENST00000558539.5;ENST00000559244.5;ENST00000379535.8;ENST00000559697.5;ENST00000426013.6;ENST00000557961.5;ENST00000559930.5;ENST00000558746.5;ENST00000558893.5;ENST00000558830.5;ENST00000558522.5;ENST00000559619.5;ENST00000559345.5;ENST00000561171.5;ENST00000559258.5;ENST00000559690.5;ENST00000559158.5;ENST00000560422.5;ENST00000558539.5;ENST00000559244.5	234.227	184.008	409.782	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AL691403.1_LS0001	chr14:75254997|75259378:+	AL691403.1	-	lncRNA gene	no	.	1.786	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CARMIL1_LS031	chr6:25551085|25554009:+	CARMIL1	capping protein regulator and myosin 1 linker 1	protein coding gene	no	ENST00000329474.6;ENST00000635618.1	17.543	14.917	10.076	0.913(8747)	0.952(668)	0.933(16224)	non tumor-specific	exon_skip	yes
UN_GOLGB1_LS0012	chr3:121668508|121669197:-	GOLGB1	golgin B1	protein coding gene	no	.	4.843	1.068	0.000	0.051(485)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_EPPIN-WFDC6_LS0005	chr20:45539423|45541344:-	EPPIN-WFDC6	EPPIN-WFDC6 readthrough	protein coding gene	no	.	4.690	5.337	0.000	0.002(17)	0.017(12)	0(0)	non tumor-specific	nAS	no
DAPK1_LS008	chr9:87605175|87639354:+	DAPK1	death associated protein kinase 1	protein coding gene	yes	ENST00000472344.1	0.071	0.082	0.750	0.155(1488)	0.248(174)	0.151(2623)	non tumor-specific	exon_skip	yes
GCDH_LS025	chr19:12900139|12900234:+	GCDH	glutaryl-CoA dehydrogenase	protein coding gene	no	ENST00000588242.2	0.432	0.230	0.848	0.378(3620)	0.365(256)	0.447(7765)	non tumor-specific	alt_5prime;intron_retention	yes
ANKMY2_LS008	chr7:16615904|16624983:-	ANKMY2	ankyrin repeat and MYND domain containing 2	protein coding gene	no	ENST00000306999.6;ENST00000447802.3;ENST00000628652.1	28.846	23.467	11.453	0.965(9250)	0.989(694)	0.963(16732)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CARMIL3_LS026	chr14:24060756|24060927:+	CARMIL3	capping protein regulator and myosin 1 linker 3	protein coding gene	no	ENST00000342740.5;ENST00000561354.1	1.657	0.641	2.304	0.459(4397)	0.368(258)	0.664(11535)	non tumor-specific	intron_retention	yes
UN_RPS15AP27_UP_LS0002	chr9:108017025|108053201:-	RPS15AP27	ribosomal protein S15a pseudogene 27	pseudogene	no	.	2.455	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGF2_LS0007	chr11:2129241|2129463:+	IGF2	insulin like growth factor 2	protein coding gene	yes	.	488.430	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR200B_UP_LS0014	chr1:1163258|1163635:+	MIR200B	microRNA 200b	small non-coding RNA gene	yes	.	3.250	1.048	0.000	0.015(143)	0.006(4)	0(0)	non tumor-specific	nAS	no
TRIP10_LS011	chr19:6743256|6743494:+	TRIP10	thyroid hormone receptor interactor 10	protein coding gene	no	ENST00000600428.5;ENST00000313285.12;ENST00000600677.5;ENST00000313244.13;ENST00000595305.5;ENST00000596758.5;ENST00000600491.5;ENST00000596673.1;ENST00000595319.5	57.135	42.461	177.134	0.992(9507)	0.996(699)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ATP6V0A1_UP_LS0025	chr17:42423272|42436266:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	.	1.578	0.457	0.000	0.006(55)	0.011(8)	0(0)	non tumor-specific	nAS	no
GLRX3_LS012	chr10:130174906|130174997:+	GLRX3	glutaredoxin 3	protein coding gene	no	ENST00000331244.9;ENST00000368644.5;ENST00000481034.1	260.213	106.021	98.623	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL138752.2_LS0048	chr9:37763808|37768076:+	AL138752.2	-	protein coding gene	no	.	2.387	0.326	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SEMA4G_LS035	chr10:100983808|100984490:+	SEMA4G	semaphorin 4G	protein coding gene	no	ENST00000476171.1	0.568	0.416	0.872	0.719(6890)	0.788(553)	0.258(4477)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LIMS3-LOC440895_LS017	chr2:109964802|109968070:+	LIMS3-LOC440895	-	protein coding gene	no	ENST00000640669.1	2.446	1.389	1.150	0.328(3142)	0.427(300)	0.324(5631)	non tumor-specific	nAS	yes
COL11A1_LS019	chr1:102915684|102920311:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	ENST00000370096.8;ENST00000358392.6;ENST00000353414.8;ENST00000635193.1;ENST00000512756.5	13.076	4.250	2.695	0.507(4857)	0.087(61)	0.49(8515)	non tumor-specific	nAS	yes
UN_GLUD1P3_LS0008	chr10:73731255|73732341:+	GLUD1P3	glutamate dehydrogenase 1 pseudogene 3	pseudogene	no	.	1.826	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC113423.2_UP_LS0011	chr5:174578198|174579207:-	AC113423.2	-	lncRNA gene	no	.	4.798	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MBOAT1_LS0023	chr6:20144315|20212136:-	MBOAT1	membrane bound O-acyltransferase domain containing 1	protein coding gene	no	.	1.356	0.062	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
OPN3_LS005	chr1:241597997|241600806:-	OPN3	opsin 3	protein coding gene	no	ENST00000462265.5	0.139	0.049	0.601	0.107(1028)	0.158(111)	0.003(58)	non tumor-specific	nAS	yes
IRF3_LS009	chr19:49660828|49662145:-	IRF3	interferon regulatory factor 3	protein coding gene	yes	.;.	4.743	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL772337.3_LS001	chr9:87864228|87865902:+	AL772337.3	-	pseudogene	no	ENST00000447524.1	0.137	0.200	0.773	0.032(302)	0.077(54)	0.007(124)	non tumor-specific	nAS	yes
RICTOR_LS046	chr5:39021136|39074111:-	RICTOR	RPTOR independent companion of MTOR complex 2	protein coding gene	no	ENST00000357387.7;ENST00000511516.5;ENST00000296782.9;ENST00000513566.1	3.569	2.441	2.742	0.676(6475)	0.818(574)	0.855(14858)	non tumor-specific	exon_skip	yes
SARS2_LS021	chr19:38921667|38922238:-	SARS2	seryl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000221431.10;ENST00000430193.7;ENST00000455102.6	21.601	11.800	9.963	0.986(9444)	0.993(697)	0.975(16945)	non tumor-specific	alt_3prime;intron_retention	yes
FBH1_LS023	chr10:5917676|5918342:+	FBH1	F-box DNA helicase 1	protein coding gene	no	ENST00000397269.7;ENST00000362091.8;ENST00000379999.6	72.049	48.647	66.521	0.988(9467)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
BCL6_LS004	chr3:187725629|187728360:-	BCL6	BCL6 transcription repressor	protein coding gene	yes	ENST00000621333.4;ENST00000450123.6	4.890	3.625	8.611	0.879(8418)	0.943(662)	0.902(15685)	non tumor-specific	exon_skip	yes
UN_TWIST2_LS0004	chr2:238848733|238866744:+	TWIST2	twist family bHLH transcription factor 2	protein coding gene	yes	.	6.595	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4G3_LS051	chr1:21089213|21111323:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000356916.7;ENST00000463775.1	1.453	0.495	2.011	0.087(838)	0.09(63)	0.825(14341)	non tumor-specific	exon_skip;mutex_exons	yes
GEMIN4_LS007	chr17:749909|751651:-	GEMIN4	gem nuclear organelle associated protein 4	protein coding gene	no	ENST00000574958.1	0.143	0.033	0.616	0.075(717)	0.074(52)	0.027(468)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC003984.1_LS001	chr7:84532607|84549147:+	AC003984.1	-	lncRNA gene	no	ENST00000450977.2	7.258	0.927	0.711	0.061(581)	0.155(109)	0.008(147)	non tumor-specific	nAS	yes
PWP2_LS012	chr21:44120496|44120631:+	PWP2	PWP2 small subunit processome component	protein coding gene	no	ENST00000291576.11;ENST00000471490.1	15.203	8.277	1.408	0.961(9207)	0.97(681)	0.387(6731)	non tumor-specific	nAS	yes
UN_NEMF_UP_LS0023	chr14:49853838|49862686:-	NEMF	nuclear export mediator factor	protein coding gene	no	.	53.410	1.141	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
SBNO2_LS025	chr19:1115659|1116021:-	SBNO2	strawberry notch homolog 2	protein coding gene	no	.;.	1.051	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
D2HGDH_LS008	chr2:241742574|241743622:+	D2HGDH	D-2-hydroxyglutarate dehydrogenase	protein coding gene	no	ENST00000321264.8;ENST00000403782.5;ENST00000400769.6;ENST00000417686.1	22.253	15.401	26.355	0.982(9405)	0.986(692)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
MAP3K1_LS004	chr5:56864934|56865340:+	MAP3K1	mitogen-activated protein kinase kinase kinase 1	protein coding gene	no	ENST00000399503.3	14.903	9.899	3.993	0.775(7421)	0.893(627)	0.904(15712)	non tumor-specific	nAS	yes
UN_ARNTL_LS0024	chr11:13381254|13384480:+	ARNTL	aryl hydrocarbon receptor nuclear translocator like	protein coding gene	yes	.	1.486	0.245	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	nAS	no
CHRNA4_LS012	chr20:63355595|63355975:-	CHRNA4	cholinergic receptor nicotinic alpha 4 subunit	protein coding gene	no	ENST00000615287.4;ENST00000498043.6	1.169	0.599	1.090	0.02(196)	0.088(62)	0.065(1132)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CSK_LS0004	chr15:74782312|74782399:-	CSK	C-terminal Src kinase	protein coding gene	no	.	1.129	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL513325.1_UP_LS0002	chr1:196975114|196982885:+	AL513325.1	-	pseudogene	no	.	2.755	1.256	0.000	0.004(43)	0.02(14)	0(0)	non tumor-specific	alt_3prime	no
UN_ARF1_LS0167	chr1:228098733|228098815:-	ARF1	ADP ribosylation factor 1	protein coding gene	yes	.	5.887	1.701	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGA5_LS032	chr12:54409352|54409485:-	ITGA5	integrin subunit alpha 5	protein coding gene	yes	ENST00000293379.8;ENST00000435631.6;ENST00000293379.8;ENST00000435631.6	47.029	38.947	53.863	0.949(9095)	0.987(693)	0.967(16811)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AKR7L_LS0007	chr1:19269097|19269272:-	AKR7L	aldo-keto reductase family 7 like (gene/pseudogene)	pseudogene	no	.	1.274	0.426	0.000	0.006(61)	0.007(5)	0(0)	non tumor-specific	exon_skip;intron_retention	no
PTK7_LS019	chr6:43142081|43142172:+	PTK7	protein tyrosine kinase 7 (inactive)	protein coding gene	yes	ENST00000230419.8;ENST00000470019.5;ENST00000230418.8;ENST00000345201.6;ENST00000349241.6;ENST00000487673.5;ENST00000481273.5	78.787	36.376	8.721	0.965(9249)	0.933(655)	0.886(15406)	non tumor-specific	alt_3prime	yes
MFSD11_LS026	chr17:76754204|76767386:+	MFSD11	major facilitator superfamily domain containing 11	protein coding gene	no	ENST00000585958.5	0.112	0.141	2.057	0.169(1615)	0.161(113)	0.842(14637)	non tumor-specific	alt_5prime;exon_skip	yes
SOD2_LS020	chr6:159692863|159727129:-	SOD2	superoxide dismutase 2	protein coding gene	yes	ENST00000401980.3	0.781	0.358	0.672	0.183(1756)	0.174(122)	0.156(2711)	non tumor-specific	alt_5prime	yes
UN_NAF1_LS0008	chr4:163129342|163133154:-	NAF1	TNFAIP3 interacting protein 1	protein coding gene	no	.	2.546	0.724	0.000	0.013(121)	0.02(14)	0(0)	non tumor-specific	alt_3prime	no
L3MBTL1_LS004	chr20:43513639|43513838:+	L3MBTL1	L3MBTL histone methyl-lysine binding protein 1	protein coding gene	no	ENST00000439769.2;ENST00000418998.6;ENST00000427442.8;ENST00000649917.1	0.459	0.236	1.731	0.134(1283)	0.11(77)	0.714(12404)	non tumor-specific	exon_skip	yes
UN_ZDHHC4_LS0021	chr7:6585430|6586126:-	ZDHHC4	zinc finger DHHC-type palmitoyltransferase 4	protein coding gene	no	.	0.789	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC083837.2_LS0006	chr8:78805695|78851091:+	AC083837.2	-	no	no	.	1.129	0.184	0.000	0.012(111)	0.007(5)	0(0)	non tumor-specific	nAS	no
C14orf132_LS005	chr14:96051222|96086511:+	C14orf132	chromosome 14 open reading frame 132	protein coding gene	no	ENST00000553764.1	0.207	0.122	0.665	0.025(239)	0.016(11)	0.02(345)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RRBP1_LS0126	chr20:17658937|17659118:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	12.403	3.465	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_FREM1_LS0025	chr9:14788177|14788919:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	.	2.421	0.166	0.000	0.007(64)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_FOSL2_LS0034	chr2:28412247|28412271:-	FOSL2	FOS like 2, AP-1 transcription factor subunit	protein coding gene	no	.	6.345	0.271	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
DENND4A_LS029	chr15:65706224|65715478:-	DENND4A	DENN domain containing 4A	protein coding gene	no	ENST00000443035.7;ENST00000431932.6;ENST00000635620.1;ENST00000564674.5	9.338	7.023	6.980	0.806(7723)	0.952(668)	0.957(16633)	non tumor-specific	nAS	yes
UN_APOA1_LS0052	chr11:116836410|116837006:+	APOA1	apolipoprotein A1	protein coding gene	no	.	56.755	292.871	0.000	0.002(17)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_STOX2_LS0001	chr4:183798055|183798643:+	STOX2	storkhead box 2	protein coding gene	no	.	1.374	0.225	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
TSPAN32_LS018	chr11:2316312|2316632:+	TSPAN32	tetraspanin 32	protein coding gene	yes	ENST00000446063.6	0.043	0.012	0.713	0.025(238)	0.034(24)	0.044(768)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_LEPROTL1_LS0027	chr8:30132906|30137381:-	LEPROTL1	leptin receptor overlapping transcript like 1	protein coding gene	no	.	1.505	0.287	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLEC9A_LS003	chr12:10052094|10052630:+	CLEC9A	C-type lectin domain containing 9A	protein coding gene	no	ENST00000355819.5	0.250	0.000	1.669	0(4)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_ZNF295-AS1_LS0002	chr21:42022211|42023842:+	ZNF295-AS1	ZNF295 antisense RNA 1	lncRNA gene	no	.	4.370	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02541_LS0005	chr6:113623646|113625444:-	LINC02541	long intergenic non-protein coding RNA 2541	lncRNA gene	no	.	1.313	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AL031430.1_LS001	chr1:37133607|37135227:+	AL031430.1	-	lncRNA gene	no	ENST00000642067.1	6.187	0.464	0.000	0.061(589)	0.004(3)	0(0)	non tumor-specific	nAS	yes
GRK6_LS004	chr5:177426897|177430676:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000512684.1	0.223	0.115	0.680	0.231(2217)	0.201(141)	0.062(1081)	non tumor-specific	alt_3prime;exon_skip	yes
CTNNA2_LS028	chr2:80305323|80393211:+	CTNNA2	catenin alpha 2	protein coding gene	yes	ENST00000541047.5;ENST00000493024.5	0.334	0.176	3.007	0.037(359)	0.007(5)	0.089(1542)	non tumor-specific	nAS	yes
GAP43_LS001	chr3:115623719|115663521:+	GAP43	growth associated protein 43	protein coding gene	no	ENST00000393780.3	1.117	0.579	2.017	0.067(644)	0.013(9)	0.145(2514)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SUSD1_LS0038	chr9:112143617|112149244:-	SUSD1	sushi domain containing 1	protein coding gene	no	.	5.083	1.269	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FSIP1_LS0036	chr15:39594360|39595405:-	FSIP1	fibrous sheath interacting protein 1	protein coding gene	no	.	3.101	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AL157392.2_LS001	chr10:13729512|13744513:+	AL157392.2	-	lncRNA gene	no	ENST00000449462.1	0.257	0.000	0.628	0(4)	0(0)	0(1)	non tumor-specific	nAS	yes
LINC02246_LS005	chr21:14837823|14853274:-	LINC02246	long intergenic non-protein coding RNA 2246	lncRNA gene	no	ENST00000412426.5	0.999	0.045	0.676	0.017(165)	0.009(6)	0.15(2610)	non tumor-specific	nAS	yes
UN_AC000120.3_LS0059	chr7:92245676|92245822:-	AC000120.3	-	protein coding gene	no	.	0.833	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_SUCLG1_LS0003	chr2:84432354|84433352:-	SUCLG1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein coding gene	no	.	8.605	0.583	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MIR4690_UP_LS0002	chr11:65615398|65615792:+	MIR4690	microRNA 4690	small non-coding RNA gene	no	.	0.869	0.091	0.000	0.008(79)	0.006(4)	0(0)	non tumor-specific	nAS	no
PNMT_LS011	chr17:39669836|39669951:+	PNMT	phenylethanolamine N-methyltransferase	protein coding gene	no	ENST00000394246.1;ENST00000269582.2	18.264	4.413	12.799	0.487(4668)	0.697(489)	0.907(15766)	non tumor-specific	intron_retention	yes
VWF_LS053	chr12:6121338|6122725:-	VWF	von Willebrand factor	protein coding gene	no	ENST00000321023.5;ENST00000538563.1	0.176	0.057	1.678	0.11(1055)	0.209(147)	0.536(9324)	non tumor-specific	exon_skip	yes
UN_NSUN2_LS0017	chr5:6618024|6619444:-	NSUN2	NOP2/Sun RNA methyltransferase 2	protein coding gene	no	.	1.948	0.200	0.000	0.013(129)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
BRCC3_LS009	chrX:155072343|155077170:+	BRCC3	DEP domain containing 1B	protein coding gene	no	.;.	1.808	0.202	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC02444_LS0001	chr12:73163233|73169275:+	LINC02444	long intergenic non-protein coding RNA 2444	lncRNA gene	no	.	2.992	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACAD10_LS0049	chr12:111746249|111747049:+	ACAD10	acyl-CoA dehydrogenase family member 10	protein coding gene	no	.	3.626	0.732	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TSC1_LS022	chr9:132911568|132912282:-	TSC1	TSC complex subunit 1	protein coding gene	yes	ENST00000298552.8;ENST00000545250.5;ENST00000440111.6;ENST00000642627.1;ENST00000646625.1;ENST00000644097.1;ENST00000643875.1;ENST00000645901.1;ENST00000642811.1;ENST00000647279.1;ENST00000642617.1;ENST00000643583.1;ENST00000644319.1;ENST00000644255.1;ENST00000646391.1;ENST00000643072.1;ENST00000647506.1;ENST00000643362.1;ENST00000642344.1;ENST00000642745.1;ENST00000493467.6;ENST00000642646.1;ENST00000645150.1;ENST00000647078.1;ENST00000647462.1;ENST00000644997.1;ENST00000645129.1;ENST00000403810.6;ENST00000642854.1;ENST00000643691.1	10.460	5.809	13.797	0.942(9028)	0.934(656)	0.977(16982)	non tumor-specific	alt_5prime	yes
UN_SLC4A11_LS0028	chr20:3238043|3239095:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	.	0.880	0.200	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL391422.4_LS0010	chr6:3753625|3753647:+	AL391422.4	-	lncRNA gene	no	.	3.149	0.828	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UBC_LS0610	chr12:124912923|124913112:+	UBC	ubiquitin C	protein coding gene	no	.	16.173	3.458	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
CAGE1_LS007	chr6:7385872|7386979:-	CAGE1	cancer antigen 1	protein coding gene	no	ENST00000458291.6;ENST00000379918.8;ENST00000502583.5;ENST00000442019.6;ENST00000512086.5;ENST00000338150.8;ENST00000512691.1;ENST00000509324.1	0.868	0.000	0.622	0(3)	0(0)	0.009(165)	non tumor-specific	exon_skip	yes
UN_GCNT2_LS0004	chr6:10510640|10518985:-	GCNT2	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein coding gene	no	.	1.704	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
FAM149A_LS029	chr4:186167262|186171943:+	FAM149A	family with sequence similarity 149 member A	protein coding gene	no	ENST00000502894.1	0.520	0.683	1.900	0.586(5618)	0.775(544)	0.701(12188)	non tumor-specific	alt_3prime	yes
UN_AC114316.2_UP_LS0020	chr5:91721076|91721355:+	AC114316.2	-	lncRNA gene	no	.	2.095	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
AC006369.1_LS003	chr2:37642927|37644417:+	AC006369.1	-	lncRNA gene	no	ENST00000419425.1	0.377	0.172	0.627	0.05(480)	0.085(60)	0.021(368)	non tumor-specific	nAS	yes
UN_ACAD10_LS0059	chr12:111749593|111753772:+	ACAD10	acyl-CoA dehydrogenase family member 10	protein coding gene	no	.	2.848	0.205	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
CA5B_LS014	chrX:15772614|15774302:+	CA5B	carbonic anhydrase 5B	protein coding gene	no	ENST00000318636.7;ENST00000454127.2	5.788	4.969	5.354	0.825(7905)	0.902(633)	0.948(16476)	non tumor-specific	exon_skip	yes
UN_SLC25A37_LS0016	chr8:23544003|23566108:+	SLC25A37	solute carrier family 25 member 37	protein coding gene	no	.	1.249	0.152	0.000	0.008(80)	0.006(4)	0(0)	non tumor-specific	nAS	no
EI24_LS023	chr11:125580204|125582346:+	EI24	EI24 autophagy associated transmembrane protein	protein coding gene	yes	ENST00000527235.6	1.415	1.847	4.340	0.263(2516)	0.249(175)	0.918(15949)	non tumor-specific	exon_skip	yes
UN_COL9A2_LS0004	chr1:40301074|40301187:+	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	.	1.717	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MUC4_LS195	chr3:195781417|195782186:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	4.240	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MYO5C_LS055	chr15:52282892|52295610:-	MYO5C	myosin VC	protein coding gene	no	ENST00000261839.11;ENST00000560809.5;ENST00000558902.5;ENST00000559459.5	2.063	1.851	2.394	0.634(6071)	0.848(595)	0.687(11933)	non tumor-specific	alt_3prime;exon_skip	yes
SLC1A6_LS023	chr19:14977777|14978120:-	SLC1A6	solute carrier family 1 member 6	protein coding gene	no	ENST00000598504.5;ENST00000601761.1	0.114	0.000	0.728	0.006(54)	0(0)	0.007(114)	non tumor-specific	alt_3prime;exon_skip	yes
RSRP1_LS022	chr1:25246592|25247337:-	RSRP1	arginine and serine rich protein 1	protein coding gene	no	ENST00000568212.1	0.043	0.023	0.692	0.212(2032)	0.164(115)	0.182(3171)	non tumor-specific	nAS	yes
TM9SF2_LS017	chr13:99547104|99549165:+	TM9SF2	transmembrane 9 superfamily member 2	protein coding gene	no	ENST00000642475.1;ENST00000376387.4	307.853	224.929	98.243	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
ATP13A2_LS009	chr1:16989770|16990127:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000341676.9	0.197	2.505	2.513	0.87(8337)	0.819(575)	0.785(13652)	non tumor-specific	exon_skip	yes
UN_SDK1_UP_LS0002	chr7:3197692|3215993:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	.	4.632	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TFAP4_LS002	chr16:4260245|4260455:-	TFAP4	transcription factor AP-4	protein coding gene	no	ENST00000204517.10;ENST00000574639.1	24.508	7.846	5.302	0.987(9459)	0.98(688)	0.954(16589)	non tumor-specific	exon_skip	yes
UN_HDAC3_LS0004	chr5:141621532|141625208:-	HDAC3	histone deacetylase 3	protein coding gene	yes	.	6.432	0.938	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
IL36B_LS003	chr2:113028115|113028939:-	IL36B	interleukin 36 beta	protein coding gene	no	ENST00000327407.2	2.172	6.755	6.273	0.063(604)	0.063(44)	0.114(1983)	non tumor-specific	nAS	yes
NMNAT3_LS006	chr3:139573680|139575583:-	NMNAT3	nicotinamide nucleotide adenylyltransferase 3	protein coding gene	no	ENST00000506254.5;ENST00000509447.1	0.086	0.095	0.898	0.176(1688)	0.151(106)	0.351(6096)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TM2D3_LS0007	chr15:101633907|101645087:-	TM2D3	TM2 domain containing 3	protein coding gene	no	.	3.828	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SEC14L4_LS009	chr22:30492155|30492474:-	SEC14L4	SEC14 like lipid binding 4	protein coding gene	no	ENST00000255858.11;ENST00000321205.9;ENST00000320982.3;ENST00000381982.3	4.151	3.061	1.054	0.217(2076)	0.295(207)	0.277(4808)	non tumor-specific	exon_skip;intron_retention	yes
TRIM40_LS008	chr6:30147209|30147520:+	TRIM40	tripartite motif containing 40	protein coding gene	no	ENST00000396581.5;ENST00000376724.6;ENST00000307859.4	2.564	0.598	1.040	0.058(556)	0.104(73)	0.055(955)	non tumor-specific	alt_3prime;exon_skip	yes
NECAB3_LS020	chr20:33660034|33660259:-	NECAB3	N-terminal EF-hand calcium binding protein 3	protein coding gene	no	ENST00000494174.5	0.373	0.045	1.673	0.206(1974)	0.198(139)	0.737(12816)	non tumor-specific	alt_3prime;intron_retention	yes
UN_FMNL2_LS0019	chr2:152558823|152575136:+	FMNL2	formin like 2	protein coding gene	no	.	0.472	0.067	0.000	0.009(83)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_KLHL6_LS0021	chr3:183508508|183527805:-	KLHL6	kelch like family member 7	protein coding gene	no	.	3.465	1.051	0.000	0.014(133)	0.013(9)	0(0)	non tumor-specific	alt_5prime	no
UN_AC013565.1_LS0012	chr15:89075384|89079437:+	AC013565.1	-	lncRNA gene	no	.	2.358	0.251	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM90A1_LS004	chr12:8224888|8225836:-	FAM90A1	family with sequence similarity 90 member A1	protein coding gene	no	ENST00000538603.5;ENST00000442295.2	1.986	0.473	0.907	0.219(2099)	0.056(39)	0.292(5071)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RN7SL571P_UP_LS0001	chr13:75907426|75934735:+	RN7SL571P	RNA, 7SL, cytoplasmic 571, pseudogene	small non-coding RNA gene	no	.	2.204	0.122	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
YARS_LS014	chr1:32797843|32806482:-	YARS	tyrosyl-tRNA synthetase 1	protein coding gene	no	ENST00000373477.8;ENST00000616261.1;ENST00000481895.5;ENST00000470377.1	116.826	62.231	55.428	0.997(9551)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
NUP43_LS003	chr6:149727198|149731613:-	NUP43	nucleoporin 43	protein coding gene	no	ENST00000340413.6;ENST00000367404.8;ENST00000340413.6;ENST00000367404.8	30.287	15.792	6.774	0.97(9291)	0.976(685)	0.957(16632)	non tumor-specific	alt_3prime;exon_skip	yes
POLG2_LS021	chr17:64482999|64485728:-	POLG2	DNA polymerase gamma 2, accessory subunit	protein coding gene	no	ENST00000539111.6;ENST00000581355.1;ENST00000582501.5;ENST00000585104.1;ENST00000539111.6;ENST00000581355.1;ENST00000582501.5;ENST00000585104.1	12.949	5.606	9.593	0.989(9474)	0.994(698)	0.977(16981)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FGGY_LS0064	chr1:59638375|59650236:+	FGGY	FGGY carbohydrate kinase domain containing	protein coding gene	no	.	2.111	0.031	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_POP5_LS0005	chr12:120579597|120579763:-	POP5	POP5 homolog, ribonuclease P/MRP subunit	protein coding gene	no	.	17.465	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ACACA_LS053	chr17:37248156|37248593:-	ACACA	acetyl-CoA carboxylase alpha	protein coding gene	no	ENST00000616317.4;ENST00000612895.4;ENST00000614428.4;ENST00000617649.4;ENST00000613146.4;ENST00000612926.1	7.549	5.958	5.355	0.89(8527)	0.929(652)	0.915(15901)	non tumor-specific	nAS	yes
LRTM1_LS001	chr3:54918892|54924619:-	LRTM1	leucine rich repeats and transmembrane domains 1	protein coding gene	no	ENST00000273286.5;ENST00000493075.1	3.285	2.042	1.301	0.018(171)	0.038(27)	0.049(850)	non tumor-specific	exon_skip	yes
UN_FAT2_LS0019	chr5:151521816|151521892:+	FAT2	FAT atypical cadherin 2	protein coding gene	no	.	3.142	1.988	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
UCP1_LS003	chr4:140563211|140563318:-	UCP1	uncoupling protein 1	protein coding gene	no	ENST00000262999.3	30.485	0.314	0.835	0.025(238)	0.064(45)	0.073(1262)	non tumor-specific	nAS	yes
OGDH_LS035	chr7:44701615|44707225:+	OGDH	oxoglutarate dehydrogenase	protein coding gene	no	ENST00000439616.6;ENST00000447398.5;ENST00000449767.5;ENST00000444676.5;ENST00000631326.2;ENST00000222673.5	258.304	195.447	132.943	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_S100A13_LS0021	chr1:153626528|153627483:-	S100A13	S100 calcium binding protein A13	protein coding gene	no	.	23.481	0.946	0.000	0.007(70)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_STPG4_LS0021	chr2:47066137|47086147:-	STPG4	sperm-tail PG-rich repeat containing 4	protein coding gene	no	.	5.599	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IL1RAPL2_LS0005	chrX:105313457|105314332:-	IL1RAPL2	interleukin 1 receptor accessory protein like 2	protein coding gene	no	.	10.998	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ARFGEF2_LS006	chr20:48951469|48952705:+	ARFGEF2	ADP ribosylation factor guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000371917.4	11.041	9.008	4.517	0.839(8036)	0.934(656)	0.899(15620)	non tumor-specific	exon_skip	yes
EXOC7_LS019	chr17:76088122|76088464:-	EXOC7	exocyst complex component 7	protein coding gene	no	ENST00000332065.9;ENST00000589210.5;ENST00000335146.11;ENST00000607838.5;ENST00000467929.6;ENST00000405575.8;ENST00000357231.8;ENST00000634349.1;ENST00000411744.6;ENST00000592559.1	67.654	46.022	70.472	0.991(9498)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AC073912.1_UP_LS0002	chr12:130762060|130762189:+	AC073912.1	-	lncRNA gene	no	.	2.416	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCDH15_LS0051	chr10:55166651|55291780:-	PCDH15	protocadherin related 15	protein coding gene	no	.	15.513	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM167A_LS004	chr5:83061911|83077321:-	TMEM167A	transmembrane protein 167A	protein coding gene	no	ENST00000504622.5	2.242	1.590	4.359	0.954(9143)	0.959(673)	0.94(16345)	non tumor-specific	exon_skip	yes
RNF10_LS048	chr12:120575950|120576590:+	RNF10	ring finger protein 10	protein coding gene	no	ENST00000325954.8;ENST00000413266.6;ENST00000545419.5;ENST00000535470.5;ENST00000538254.1;ENST00000542701.1;ENST00000544805.1	90.965	60.961	238.449	0.994(9524)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
KIAA0753_LS031	chr17:6628741|6635011:-	KIAA0753	KIAA0753	protein coding gene	no	ENST00000361413.7;ENST00000570790.5;ENST00000571642.5;ENST00000573033.1	4.598	2.847	5.120	0.814(7798)	0.882(619)	0.933(16210)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CORO7_LS0039	chr16:4364912|4365003:-	CORO7	coronin 7	protein coding gene	no	.	9.233	1.187	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
RASSF4_LS033	chr10:44991069|44993269:+	RASSF4	Ras and Rab interactor 2	protein coding gene	yes	.;.	6.650	2.218	0.000	0.008(80)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF589_LS0071	chr3:48273493|48276190:+	ZNF589	zinc finger protein 589	protein coding gene	no	.	2.240	0.097	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CASP8AP2_LS0035	chr6:89836692|89846562:+	CASP8AP2	caspase 8 associated protein 2	protein coding gene	no	.	1.725	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GANC_LS0030	chr15:42292917|42306546:+	GANC	glucosidase alpha, neutral C	protein coding gene	no	.	2.583	0.210	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
EIF4B_LS009	chr12:53020026|53021806:+	EIF4B	eukaryotic translation initiation factor 4B	protein coding gene	no	ENST00000262056.13;ENST00000549645.5;ENST00000551002.5;ENST00000420463.7;ENST00000550704.5;ENST00000549481.5;ENST00000552490.5;ENST00000550390.1	188.267	143.087	189.679	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRIP2_LS0008	chr14:105478774|105479630:-	CRIP2	cysteine rich protein 2	protein coding gene	no	.	3.560	0.138	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC104211.1_LS0002	chr8:92677775|92678809:+	AC104211.1	-	lncRNA gene	no	.	1.311	0.942	0.000	0.031(293)	0.094(66)	0(0)	non tumor-specific	nAS	no
AL359076.1_LS001	chr9:2042130|2045835:-	AL359076.1	-	lncRNA gene	no	ENST00000426860.1	0.706	0.367	0.642	0.353(3382)	0.412(289)	0.008(141)	non tumor-specific	nAS	yes
COPG1_LS020	chr3:129268620|129268932:+	COPG1	COPI coat complex subunit gamma 1	protein coding gene	no	ENST00000314797.10;ENST00000515725.5	348.506	182.707	124.405	0.998(9559)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CAMKMT_LS0031	chr2:44698453|44704283:+	CAMKMT	calmodulin-lysine N-methyltransferase	protein coding gene	no	.	1.856	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL23_LS0020	chr17:38852721|38853049:+	RPL23	ribosomal protein L23	protein coding gene	yes	.	86.532	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RPL30_LS002	chr8:98041850|98042645:-	RPL30	ribosomal protein L30	protein coding gene	no	ENST00000521534.1;ENST00000521291.5;ENST00000396070.6;ENST00000518850.5;ENST00000287038.7;ENST00000523172.5;ENST00000521726.1	2467.874	856.481	1945.438	0.922(8838)	0.925(649)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C3_LS0003	chr19:6677983|6678223:+	C3	complement C3	protein coding gene	no	.	7.358	19.239	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_GATD1_LS0077	chr11:768542|768722:-	GATD1	glutamine amidotransferase like class 1 domain containing 1	protein coding gene	no	.	16.903	0.730	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	nAS	no
MAP3K7CL_LS004	chr21:29080708|29085813:+	MAP3K7CL	MAP3K7 C-terminal like	protein coding gene	no	ENST00000496779.5;ENST00000419845.5	0.542	0.214	0.944	0.223(2135)	0.34(239)	0.463(8040)	non tumor-specific	exon_skip	yes
UN_ZNF486_LS0036	chr19:20196157|20196964:+	ZNF486	zinc finger protein 486	protein coding gene	no	.	1.575	0.621	0.000	0.03(290)	0.06(42)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ESS2_LS0027	chr22:19140059|19142538:-	ESS2	ess-2 splicing factor homolog	protein coding gene	no	.	4.025	0.078	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AL121908.1_LS001	chr20:59626949|59628094:-	AL121908.1	-	lncRNA gene	no	ENST00000451510.1	0.388	0.153	1.078	0.025(239)	0.004(3)	0.027(474)	non tumor-specific	nAS	yes
TBC1D3G_LS003	chr17:36325731|36327015:+	TBC1D3G	TBC1 domain family member 3G	protein coding gene	no	ENST00000569055.2	0.391	0.153	0.676	0.304(2913)	0.185(130)	0.019(332)	non tumor-specific	nAS	yes
ZSCAN21_LS003	chr7:100049841|100056971:+	ZSCAN21	zinc finger and SCAN domain containing 21	protein coding gene	no	.;.	2.065	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
BAALC-AS1_LS006	chr8:103234372|103246294:-	BAALC-AS1	BAALC antisense RNA 1	lncRNA gene	no	ENST00000499522.6	0.829	0.305	0.830	0.134(1284)	0.132(93)	0.377(6555)	non tumor-specific	nAS	yes
UN_CLSPN_LS0012	chr1:35748059|35748405:-	CLSPN	claspin	protein coding gene	no	.	2.628	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SLC41A1_LS007	chr1:205798051|205798669:-	SLC41A1	solute carrier family 41 member 1	protein coding gene	no	ENST00000367137.3;ENST00000468057.5	24.404	22.165	16.244	0.924(8851)	0.957(672)	0.963(16738)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FMOD_LS0009	chr1:203340821|203342337:+	FMOD	fibromodulin	protein coding gene	no	.	0.783	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PTPRVP_LS005	chr1:202171439|202171541:+	PTPRVP	protein tyrosine phosphatase receptor type V, pseudogene	pseudogene	no	ENST00000641549.1;ENST00000482597.5	2.347	0.000	0.962	0.003(26)	0(0)	0.373(6481)	non tumor-specific	nAS	yes
UN_KLHDC4_LS0017	chr16:87700701|87700787:+	KLHDC4	kelch domain containing 4	protein coding gene	no	.	2.920	0.199	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC017116.2_LS0017	chr7:44034075|44034176:-	AC017116.2	-	lncRNA gene	no	.	1.392	0.339	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ATP11B_LS0042	chr3:182913994|182917984:+	ATP11B	ATPase phospholipid transporting 11B (putative)	protein coding gene	no	.	4.908	1.443	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_NTNG1_LS0003	chr1:107142444|107148069:+	NTNG1	netrin G2	protein coding gene	no	.	0.589	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SLC12A9_LS042	chr7:100860232|100861138:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	ENST00000540482.5;ENST00000418037.5;ENST00000415287.5;ENST00000354161.7;ENST00000416675.5;ENST00000475687.5;ENST00000467972.5;ENST00000540482.5;ENST00000418037.5;ENST00000415287.5;ENST00000354161.7;ENST00000416675.5;ENST00000475687.5;ENST00000467972.5	35.197	18.498	24.718	0.993(9510)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTTY15_LS003	chrY:12686606|12687464:+	TTTY15	testis-specific transcript, Y-linked 15	lncRNA gene	no	ENST00000440408.5	4.533	2.277	1.708	0.36(3453)	0.439(308)	0.509(8840)	non tumor-specific	nAS	yes
UN_AC084262.2_UP_LS0002	chr8:29305568|29311043:+	AC084262.2	-	no	no	.	7.351	0.981	0.000	0.028(270)	0.043(30)	0(0)	non tumor-specific	nAS	no
SNX19_LS003	chr11:130879711|130903255:-	SNX19	sorting nexin 19	protein coding gene	no	ENST00000526579.5	1.842	0.809	7.467	0.402(3856)	0.397(279)	0.478(8315)	non tumor-specific	exon_skip	yes
UN_AC247036.1_UP_LS0041	chr14:105904527|105939754:+	AC247036.1	-	lncRNA gene	no	.	5.143	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
CCM2_LS013	chr7:45038426|45064463:+	CCM2	CCM2 scaffold protein	protein coding gene	no	ENST00000492883.5	0.149	0.154	1.117	0.59(5651)	0.584(410)	0.588(10218)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_BRWD1_LS0042	chr21:39298582|39304195:-	BRWD1	bromodomain and WD repeat domain containing 1	protein coding gene	no	.	1.165	0.473	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
CDHR5_LS036	chr11:621663|624213:-	CDHR5	cadherin related family member 5	protein coding gene	no	ENST00000531899.5;ENST00000526077.5	0.620	6.686	2.903	0.223(2141)	0.306(215)	0.052(906)	non tumor-specific	exon_skip	yes
UN_UBR4_LS0134	chr1:19174447|19174957:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	.	2.107	0.630	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DNPEP_LS020	chr2:219385706|219385968:-	DNPEP	aspartyl aminopeptidase	protein coding gene	no	ENST00000520694.6;ENST00000273075.8;ENST00000373972.5;ENST00000523282.5;ENST00000373963.5;ENST00000373966.5;ENST00000457935.5;ENST00000429013.5;ENST00000460963.5;ENST00000434339.5;ENST00000520694.6;ENST00000273075.8;ENST00000373972.5;ENST00000523282.5;ENST00000373963.5;ENST00000373966.5;ENST00000457935.5;ENST00000429013.5;ENST00000460963.5;ENST00000434339.5	73.928	50.457	81.100	0.998(9560)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SEC14L3_LS007	chr22:30466394|30466982:-	SEC14L3	SEC14 like lipid binding 3	protein coding gene	no	ENST00000403066.5;ENST00000215812.8;ENST00000540910.5;ENST00000402286.5;ENST00000434642.5;ENST00000401751.5;ENST00000435069.1	4.725	1.558	1.105	0.021(200)	0.201(141)	0.058(1010)	non tumor-specific	nAS	yes
UN_AP1AR_LS0018	chr4:112260862|112262992:+	AP1AR	adaptor related protein complex 1 associated regulatory protein	protein coding gene	no	.	2.281	0.562	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ZUP1_LS0013	chr6:116667207|116668145:-	ZUP1	zinc finger containing ubiquitin peptidase 1	protein coding gene	no	.	1.800	0.149	0.000	0.03(285)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
TRIM46_LS017	chr1:155178613|155179632:+	TRIM46	tripartite motif containing 46	protein coding gene	no	ENST00000545012.5;ENST00000392451.6;ENST00000368385.8;ENST00000368383.7;ENST00000368382.5;ENST00000334634.8;ENST00000611379.1	3.733	1.053	1.346	0.291(2792)	0.067(47)	0.401(6966)	non tumor-specific	exon_skip	yes
UN_ZBTB25_LS0069	chr14:64504050|64504782:+	ZBTB25	zinc finger and BTB domain containing 25	protein coding gene	no	.	0.776	0.290	0.000	0.006(53)	0.011(8)	0(0)	non tumor-specific	nAS	no
COL2A1_LS016	chr12:47980661|47980915:-	COL2A1	collagen type II alpha 1 chain	protein coding gene	no	ENST00000380518.7;ENST00000493991.5;ENST00000337299.7	18.752	3.477	1.180	0.163(1560)	0.077(54)	0.141(2458)	non tumor-specific	nAS	yes
KANSL3_LS011	chr2:96605511|96606970:-	KANSL3	KAT8 regulatory NSL complex subunit 3	protein coding gene	no	ENST00000420155.5;ENST00000597150.5	0.645	0.832	3.552	0.514(4920)	0.741(520)	0.847(14730)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RXRA_UP_LS0001	chr9:134308101|134308416:+	RXRA	retinoid X receptor alpha	protein coding gene	no	.	1.052	0.405	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RIC3_LS0012	chr11:8128291|8137378:-	RIC3	RIC3 acetylcholine receptor chaperone	protein coding gene	no	.	1.778	0.151	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MAPK15_LS0013	chr8:143717337|143718027:-	MAPK15	mitogen-activated protein kinase 15	protein coding gene	no	.	1.812	0.079	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC016027.5_UP_LS0001	chr22:18088650|18135203:-	AC016027.5	-	pseudogene	no	.	2.176	1.346	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
WDR93_LS010	chr15:89722139|89727157:+	WDR93	WD repeat domain 93	protein coding gene	no	ENST00000268130.11;ENST00000560294.5;ENST00000557825.5;ENST00000444934.3	2.355	1.676	0.976	0.098(942)	0.178(125)	0.229(3982)	non tumor-specific	nAS	yes
VLDLR_LS023	chr9:2651954|2652780:+	VLDLR	very low density lipoprotein receptor	protein coding gene	no	ENST00000382100.7;ENST00000382099.2	49.135	30.241	29.564	0.86(8242)	0.915(642)	0.969(16837)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RNA5SP31_UP_LS0001	chr13:60396307|60439688:+	RNA5SP31	RNA, 5S ribosomal pseudogene 31	no	no	.	1.257	0.052	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCBP4_LS022	chr3:51961304|51967326:-	PCBP4	poly(rC) binding protein 4	protein coding gene	no	ENST00000355852.6;ENST00000497653.5;ENST00000490063.5;ENST00000471358.1	2.575	2.036	15.185	0.885(8476)	0.923(648)	0.969(16844)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TRPM3_LS0003	chr9:70553310|70554330:-	TRPM3	transient receptor potential cation channel subfamily M member 3	protein coding gene	no	.	1.409	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTCHD1-AS_LS0017	chrX:23064121|23079410:-	PTCHD1-AS	PTCHD1 antisense RNA (head to head)	lncRNA gene	no	.	1.493	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LMBR1L_UP_LS0073	chr12:49131395|49186779:-	LMBR1L	limb development membrane protein 1 like	protein coding gene	no	.	202.513	5.271	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC12A9_LS046	chr7:100862827|100865287:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	ENST00000540482.5;ENST00000482184.1	0.319	0.297	0.910	0.681(6527)	0.685(481)	0.478(8309)	non tumor-specific	alt_3prime	yes
ITGA11_LS025	chr15:68339644|68348830:-	ITGA11	integrin subunit alpha 11	protein coding gene	no	ENST00000423218.6;ENST00000315757.8	8.657	4.767	3.527	0.582(5579)	0.631(443)	0.774(13456)	non tumor-specific	nAS	yes
UN_KIAA1257_LS0061	chr3:128960399|128961971:+	KIAA1257	cilia and flagella associated protein 92 (putative)	protein coding gene	no	.	3.237	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CPLANE1_LS0049	chr5:37247664|37249245:-	CPLANE1	ciliogenesis and planar polarity effector 1	protein coding gene	no	.	1.597	0.199	0.000	0.004(42)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
RPSA_LS006	chr3:39406834|39407621:+	RPSA	ribosomal protein SA	protein coding gene	no	ENST00000487876.1	0.071	0.037	0.736	0.852(8165)	0.843(592)	0.306(5311)	non tumor-specific	alt_5prime;intron_retention	yes
TPGS2_LS032	chr18:36818992|36828683:-	TPGS2	tubulin polyglutamylase complex subunit 2	protein coding gene	no	.;.	2.123	0.373	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SRRM4_LS009	chr12:119130834|119144539:+	SRRM4	serine/arginine repetitive matrix 4	protein coding gene	no	ENST00000641899.1	4.089	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_AL449212.1_LS0017	chr3:129388057|129388774:-	AL449212.1	-	pseudogene	no	.	2.798	0.018	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PCYOX1_UP_LS0003	chr2:70112869|70130410:+	PCYOX1	prenylcysteine oxidase 1	protein coding gene	no	.	1.836	1.405	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
TRIM41_LS030	chr5:181234355|181235354:+	TRIM41	tripartite motif containing 41	protein coding gene	no	.;.;.	2.079	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SCAF8_LS0030	chr6:154820333|154824234:+	SCAF8	SR-related CTD associated factor 8	protein coding gene	no	.	4.096	0.106	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CFTR_LS0079	chr7:117667171|117667203:-	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	.	2.511	0.189	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
RIF1_LS055	chr2:151495326|151499345:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000454583.6	1.876	0.049	0.688	0.001(7)	0.001(1)	0.026(445)	non tumor-specific	exon_skip	yes
UN_KRT75_UP_LS0050	chr12:52451589|52472086:-	KRT75	keratin 75	protein coding gene	no	.	1188.058	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC003982.1_UP_LS0002	chr12:120368133|120371402:+	AC003982.1	-	lncRNA gene	no	.	1.940	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LRP1_LS009	chr12:57154370|57154479:+	LRP1	LDL receptor related protein 1	protein coding gene	no	ENST00000243077.7;ENST00000554174.1	16.428	16.899	12.429	0.83(7949)	0.956(671)	0.948(16485)	non tumor-specific	nAS	yes
UN_TPD52L2_LS0051	chr20:63889988|63890031:-	TPD52L2	TPD52 like 2	protein coding gene	no	.	1.715	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP3M1_LS0025	chr10:74138931|74146055:-	AP3M1	adaptor related protein complex 3 subunit mu 1	protein coding gene	no	.	1.459	0.125	0.000	0.005(49)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
GLYCTK_LS002	chr3:52287876|52290304:+	GLYCTK	glycerate kinase	protein coding gene	no	ENST00000305690.12;ENST00000473032.5;ENST00000486393.5;ENST00000436784.6	0.164	0.270	1.725	0.758(7265)	0.816(573)	0.784(13627)	non tumor-specific	alt_3prime;exon_skip	yes
MTMR10_LS025	chr15:30968010|30974314:-	MTMR10	myotubularin related protein 10	protein coding gene	no	ENST00000435680.5;ENST00000567567.5;ENST00000563714.5	11.635	15.177	10.395	0.868(8313)	0.976(685)	0.971(16879)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CENPU_LS017	chr4:184725062|184728918:-	CENPU	centromere protein U	protein coding gene	no	ENST00000281453.9;ENST00000510146.5;ENST00000514781.1	30.090	5.220	2.507	0.96(9195)	0.815(572)	0.822(14285)	non tumor-specific	exon_skip	yes
GRM7_LS030	chr3:7691106|7691210:+	GRM7	glutamate metabotropic receptor 7	protein coding gene	no	ENST00000467425.5;ENST00000440923.7	1.750	0.429	1.770	0.015(142)	0.009(6)	0.23(3994)	non tumor-specific	exon_skip;intron_retention	yes
METTL21A_LS007	chr2:207582160|207621806:-	METTL21A	methyltransferase like 21A	protein coding gene	no	ENST00000458426.5;ENST00000425132.5;ENST00000458426.5;ENST00000425132.5	6.912	5.384	4.196	0.942(9027)	0.983(690)	0.921(16016)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KLHDC4_LS023	chr16:87730644|87748673:-	KLHDC4	kelch domain containing 4	protein coding gene	no	ENST00000567298.5;ENST00000316853.10;ENST00000353170.9;ENST00000270583.9;ENST00000562155.5;ENST00000622456.4;ENST00000562261.1;ENST00000566661.5;ENST00000565328.5;ENST00000569747.5;ENST00000564396.5	20.751	11.152	15.182	0.99(9486)	0.996(699)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
SIGLEC12_LS003	chr19:51497445|51498018:-	SIGLEC12	sialic acid binding Ig like lectin 12	protein coding gene	no	ENST00000596742.1;ENST00000291707.7;ENST00000598614.1	3.858	1.737	1.260	0.297(2845)	0.215(151)	0.252(4377)	non tumor-specific	exon_skip	yes
EVC2_LS017	chr4:5632032|5640522:-	EVC2	EvC ciliary complex subunit 2	protein coding gene	no	ENST00000509670.1	1.888	0.517	0.795	0.035(331)	0.088(62)	0.294(5114)	non tumor-specific	alt_5prime	yes
PLCH1_LS005	chr3:155483376|155485356:-	PLCH1	phospholipase C eta 1	protein coding gene	no	ENST00000447496.6	1.075	2.482	3.083	0.015(142)	0.007(5)	0.096(1661)	non tumor-specific	exon_skip	yes
ZNF449_LS001	chrX:135344835|135347019:+	ZNF449	zinc finger protein 449	protein coding gene	no	ENST00000370761.7;ENST00000339249.4	1.200	0.751	1.960	0.745(7138)	0.823(578)	0.771(13399)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DOCK9_LS0029	chr13:98955551|98986224:-	DOCK9	dedicator of cytokinesis 9	protein coding gene	no	.	9.595	0.623	0.000	0.002(18)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_C3P1_LS0038	chr19:10055322|10058568:+	C3P1	complement component 3 precursor pseudogene	pseudogene	no	.	3.931	1.069	0.000	0.009(89)	0.004(3)	0(0)	non tumor-specific	nAS	no
CIPC_LS004	chr14:77099202|77099884:+	CIPC	CLOCK interacting pacemaker	protein coding gene	no	ENST00000555200.1	0.014	0.009	0.658	0.035(340)	0.07(49)	0.005(91)	non tumor-specific	nAS	yes
UN_LDHA_LS0060	chr11:18407483|18407592:-	LDHA	lactate dehydrogenase A	protein coding gene	no	.	3.094	0.033	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00857_LS0004	chr10:80208231|80217486:+	LINC00857	long intergenic non-protein coding RNA 857	lncRNA gene	no	.	1.042	0.094	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
STARD9_LS014	chr15:42663490|42663820:+	STARD9	StAR related lipid transfer domain containing 9	protein coding gene	no	ENST00000290607.11	1.710	1.376	2.671	0.095(907)	0.229(161)	0.773(13433)	non tumor-specific	exon_skip;intron_retention	yes
UN_SCD5_LS0031	chr4:82698082|82705283:-	SCD5	stearoyl-CoA desaturase 5	protein coding gene	no	.	9.931	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
WDHD1_LS020	chr14:55000644|55000886:-	WDHD1	WD repeat and HMG-box DNA binding protein 1	protein coding gene	no	ENST00000360586.7;ENST00000420358.2	6.131	1.390	1.599	0.735(7044)	0.614(431)	0.708(12300)	non tumor-specific	nAS	yes
CDC20B_LS007	chr5:55125028|55127257:-	CDC20B	cell division cycle 20B	protein coding gene	no	ENST00000296733.5;ENST00000381375.6;ENST00000322374.10	6.051	2.815	0.771	0.072(690)	0.07(49)	0.033(567)	non tumor-specific	exon_skip	yes
SUGP1_LS031	chr19:19316593|19320463:-	SUGP1	SURP and G-patch domain containing 1	protein coding gene	no	ENST00000247001.9;ENST00000588731.6;ENST00000587119.5;ENST00000585763.5;ENST00000535070.5;ENST00000606725.5;ENST00000587716.7;ENST00000588580.6;ENST00000585444.1	6.742	4.042	18.474	0.989(9475)	0.996(699)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NDUFAF6_LS009	chr8:94958179|94980855:+	NDUFAF6	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein coding gene	no	ENST00000523378.5;ENST00000523378.5	0.145	0.157	1.750	0.352(3375)	0.258(181)	0.743(12911)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NUBPL_LS013	chr14:31599379|31667821:+	NUBPL	nucleotide binding protein like	protein coding gene	no	ENST00000550355.1	0.535	0.042	0.626	0.01(98)	0.014(10)	0.025(429)	non tumor-specific	exon_skip	yes
UN_CCDC18-AS1_LS0010	chr1:93273628|93305388:-	CCDC18-AS1	CCDC18 antisense RNA 1	lncRNA gene	no	.	0.785	0.033	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RRBP1_LS0213	chr20:17659364|17659395:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	48.487	4.131	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GRAMD1B_LS0023	chr11:123432126|123432916:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	.	10.398	20.074	0.000	0.002(18)	0.016(11)	0(0)	non tumor-specific	nAS	no
IPO13_LS007	chr1:43956460|43956560:+	IPO13	importin 13	protein coding gene	no	ENST00000372343.7;ENST00000489773.5;ENST00000492152.5	42.455	32.693	29.125	0.988(9462)	0.994(698)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
P2RY14_LS005	chr3:151261438|151278287:-	P2RY14	purinergic receptor P2Y14	protein coding gene	no	ENST00000494668.1	0.201	0.089	0.747	0.089(849)	0.221(155)	0.168(2914)	non tumor-specific	exon_skip	yes
RHOA_LS006	chr3:49362626|49368428:-	RHOA	ras homolog family member A	protein coding gene	yes	ENST00000418115.5;ENST00000422781.5;ENST00000445425.4	968.904	691.981	744.397	0.998(9566)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MT-ND4_LS0014	chrM:10903|10948:-	MT-ND4	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4	protein coding gene	no	.	291.277	169.062	0.000	0.018(171)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_PRSS2_LS0003	chr7:142761548|142772123:+	PRSS2	serine protease 2	protein coding gene	no	.	2171.100	586.805	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EZH1_LS0026	chr17:42720449|42722792:-	EZH1	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein coding gene	yes	.	2.655	0.212	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PES1_LS026	chr22:30592398|30605461:-	PES1	pescadillo ribosomal biogenesis factor 1	protein coding gene	no	ENST00000402281.5;ENST00000402281.5	0.026	0.123	0.790	0.123(1179)	0.214(150)	0.256(4445)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SORBS3_LS0031	chr8:22567175|22568660:+	SORBS3	sorbin and SH3 domain containing 3	protein coding gene	no	.	2.595	0.965	0.000	0.013(120)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_DCT_UP_LS0017	chr13:94513199|94515796:-	DCT	dopachrome tautomerase	protein coding gene	no	.	4.454	0.000	0.000	0.018(171)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPRY3_LS0002	chrX:155769862|155773766:+	SPRY3	sprouty RTK signaling antagonist 3	protein coding gene	no	.	1.684	0.247	0.000	0.008(76)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_VPS53_LS0105	chr17:514516|514563:+	VPS53	VPS53 subunit of GARP complex	protein coding gene	yes	.	1.333	0.140	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
DDI2_LS011	chr1:15651895|15656421:+	DDI2	DNA damage inducible 1 homolog 2	protein coding gene	no	ENST00000548451.1	0.161	0.060	0.705	0.329(3151)	0.42(295)	0.2(3468)	non tumor-specific	alt_3prime	yes
PTOV1-AS1_LS004	chr19:49846753|49851568:-	PTOV1-AS1	PTOV1 antisense RNA 1	lncRNA gene	no	ENST00000596521.1	0.869	0.000	0.439	0(4)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_RNU6-520P_UP_LS0001	chr4:70690027|70701148:+	RNU6-520P	RNA, U6 small nuclear 520, pseudogene	small non-coding RNA gene	no	.	2.294	0.066	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ANKRD11_LS0150	chr16:89299696|89299733:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	.	8.133	0.387	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
ZNF564_LS003	chr19:12528696|12541425:-	ZNF564	zinc finger protein 564	protein coding gene	no	ENST00000596193.1	0.101	0.294	0.666	0.083(799)	0.12(84)	0.126(2183)	non tumor-specific	nAS	yes
UN_PDZK1IP1_LS0009	chr1:47183795|47183831:+	PDZK1IP1	PDZK1 interacting protein 1	protein coding gene	yes	.	14.240	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NID2_LS019	chr14:52040851|52042105:-	NID2	nidogen 2	protein coding gene	no	ENST00000216286.9;ENST00000617139.4;ENST00000554284.1	13.431	7.998	8.165	0.844(8089)	0.9(632)	0.856(14878)	non tumor-specific	nAS	yes
UN_HEATR5A_LS0024	chr14:31302519|31303946:-	HEATR5A	HEAT repeat containing 5A	protein coding gene	no	.	0.923	0.007	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COL18A1_LS0072	chr21:45484094|45484151:-	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	48.727	0.118	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
CU634019.1_LS008	chr21:7081213|7085245:+	CU634019.1	-	lncRNA gene	no	ENST00000623095.3;ENST00000621909.4;ENST00000615804.1	4.134	3.644	1.036	0.822(7875)	0.818(574)	0.268(4664)	non tumor-specific	nAS	yes
AADACL2_LS001	chr3:151734173|151740646:+	AADACL2	arylacetamide deacetylase like 2	protein coding gene	no	ENST00000356517.3	2.336	1.265	2.750	0.042(405)	0.07(49)	0.177(3072)	non tumor-specific	exon_skip	yes
CACNA1G_LS006	chr17:50572854|50573021:+	CACNA1G	calcium voltage-gated channel subunit alpha1 G	protein coding gene	no	ENST00000360761.8;ENST00000354983.8;ENST00000352832.9;ENST00000442258.6;ENST00000416767.8;ENST00000502264.5;ENST00000512389.5;ENST00000513964.5;ENST00000514717.5;ENST00000510366.5;ENST00000503485.5;ENST00000507510.6;ENST00000511765.5;ENST00000507336.5;ENST00000506406.5;ENST00000504076.5;ENST00000513689.6;ENST00000507609.5;ENST00000503436.5;ENST00000510115.5;ENST00000515165.5;ENST00000514181.5;ENST00000515765.5;ENST00000514079.5;ENST00000507896.5;ENST00000511768.5;ENST00000505165.5;ENST00000503607.5;ENST00000515411.5;ENST00000429973.6;ENST00000359106.9;ENST00000358244.9;ENST00000570567.1	3.589	0.799	1.496	0.077(740)	0.046(32)	0.412(7155)	non tumor-specific	nAS	yes
ENPP7P4_LS001	chr3:125848388|125882957:+	ENPP7P4	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4	pseudogene	no	ENST00000487446.1	1.928	0.000	0.726	0(3)	0(0)	0.002(31)	non tumor-specific	nAS	yes
UN_AC244197.3_LS0041	chrX:149503445|149504157:-	AC244197.3	-	protein coding gene	no	.	10.760	1.065	0.000	0.013(124)	0.01(7)	0(0)	non tumor-specific	nAS	no
ZNF28_LS012	chr19:52818031|52821586:-	ZNF28	zinc finger protein 28	protein coding gene	no	ENST00000457749.6;ENST00000391783.6;ENST00000464469.2	0.205	0.166	0.624	0.829(7940)	0.828(581)	0.031(538)	non tumor-specific	exon_skip	yes
UN_AL049776.1_UP_LS0007	chr14:35039032|35045125:+	AL049776.1	-	lncRNA gene	no	.	5.325	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KDELR1_LS0027	chr19:48382939|48383014:-	KDELR1	KDEL endoplasmic reticulum protein retention receptor 1	protein coding gene	no	.	55.673	6.646	0.000	0.015(143)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
AFG1L_LS010	chr6:108356820|108366233:+	AFG1L	AFG1 like ATPase	protein coding gene	no	ENST00000368977.8;ENST00000421954.5;ENST00000431865.1	5.486	3.928	2.875	0.881(8444)	0.94(660)	0.909(15804)	non tumor-specific	exon_skip	yes
LRBA_LS059	chr4:150908467|150908660:-	LRBA	LPS responsive beige-like anchor protein	protein coding gene	no	ENST00000510413.5;ENST00000357115.8;ENST00000507224.5	8.962	8.195	3.634	0.69(6607)	0.859(603)	0.865(15028)	non tumor-specific	exon_skip	yes
FMNL1_LS016	chr17:45234200|45237281:+	FMNL1	formin like 1	protein coding gene	no	.;.	1.039	0.033	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MRPL14_LS0005	chr6:44116629|44127353:-	MRPL14	mitochondrial ribosomal protein L14	protein coding gene	no	.	21.774	1.832	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_CHM_LS0032	chrX:86027557|86032791:-	CHM	CHM Rab escort protein	protein coding gene	no	.	1.555	1.094	0.000	0.006(54)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
PITRM1_LS023	chr10:3149753|3151247:-	PITRM1	pitrilysin metallopeptidase 1	protein coding gene	no	ENST00000224949.8;ENST00000380989.6;ENST00000451104.6;ENST00000380994.5	85.024	57.587	56.218	0.978(9374)	0.99(695)	0.979(17020)	non tumor-specific	alt_5prime	yes
UN_SIGLEC1_UP_LS0001	chr20:3707234|3708962:-	SIGLEC1	sialic acid binding Ig like lectin 1	protein coding gene	no	.	2.532	0.485	0.000	0.031(296)	0.051(36)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ITIH4_LS012	chr3:52819518|52819754:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000491663.5;ENST00000481977.5;ENST00000537897.5	27.722	157.825	7.690	0.665(6371)	0.672(472)	0.946(16439)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GRK6_LS024	chr5:177440837|177440919:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000355472.9;ENST00000393576.7;ENST00000355958.9;ENST00000528793.5;ENST00000515666.5	87.368	35.582	39.539	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_COL1A2_LS0281	chr7:94429428|94430245:-	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	.	3.494	0.703	0.000	0.067(641)	0.02(14)	0(0)	non tumor-specific	nAS	no
ADGRF5_LS021	chr6:46882107|46883559:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	ENST00000283296.11;ENST00000265417.7	15.631	34.091	11.821	0.744(7126)	0.889(624)	0.891(15496)	non tumor-specific	nAS	yes
UN_HECTD1_UP_LS0003	chr14:31246609|31246638:-	HECTD1	HECT domain E3 ubiquitin protein ligase 1	protein coding gene	no	.	30.451	0.090	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACNG8_LS002	chr19:53978229|53979867:+	CACNG8	calcium voltage-gated channel auxiliary subunit gamma 8	protein coding gene	no	ENST00000270458.2;ENST00000638874.1	2.556	1.952	4.392	0.068(652)	0.013(9)	0.196(3404)	non tumor-specific	nAS	yes
AC068722.1_LS005	chr15:45791915|45848581:+	AC068722.1	-	lncRNA gene	no	ENST00000560705.1	1.766	0.000	0.587	0.001(7)	0(0)	0.001(15)	non tumor-specific	nAS	yes
UN_LIMCH1_LS0018	chr4:41613661|41619167:+	LIMCH1	LIM and calponin homology domains 1	protein coding gene	no	.	5.892	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AC046144.1_UP_LS0027	chr3:104520636|104522669:-	AC046144.1	-	pseudogene	no	.	2.525	0.413	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
SZRD1_LS016	chr1:16391424|16393228:+	SZRD1	SUZ RNA binding domain containing 1	protein coding gene	no	ENST00000401088.8;ENST00000476423.5;ENST00000475554.5;ENST00000472351.5	17.001	13.053	18.667	0.992(9507)	0.99(695)	0.978(17006)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DEC1_LS0129	chr9:115062439|115062917:-	DEC1	deleted in esophageal cancer 1	protein coding gene	no	.	0.376	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AADAC_LS0012	chr3:151817792|151820383:+	AADAC	arylacetamide deacetylase	protein coding gene	no	.	4.222	0.139	0.000	0.017(162)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC8A2_LS010	chr19:47457594|47465729:-	SLC8A2	solute carrier family 8 member A2	protein coding gene	no	ENST00000236877.10;ENST00000594353.1	3.318	7.766	3.349	0.11(1055)	0.147(103)	0.467(8116)	non tumor-specific	exon_skip	yes
SLC43A2_LS001	chr17:1575765|1576597:-	SLC43A2	solute carrier family 43 member 2	protein coding gene	no	ENST00000301335.9;ENST00000571650.5;ENST00000412517.3	23.681	27.239	28.617	0.942(9027)	0.949(666)	0.978(17006)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FRA10AC1_LS012	chr10:93672089|93676653:-	FRA10AC1	FRA10A associated CGG repeat 1	protein coding gene	no	.;.	5.228	1.443	0.000	0.031(301)	0.03(21)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_LRP10_LS0056	chr14:22875389|22875492:-	LRP10	LDL receptor related protein 10	protein coding gene	no	.	2.777	0.312	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBR3_LS009	chr2:169905293|169906031:+	UBR3	ubiquitin protein ligase E3 component n-recognin 3	protein coding gene	no	ENST00000272793.9;ENST00000418381.5	11.786	12.675	9.280	0.784(7508)	0.949(666)	0.951(16526)	non tumor-specific	nAS	yes
XRN1_LS005	chr3:142318694|142318790:-	XRN1	5'-3' exoribonuclease 1	protein coding gene	no	ENST00000264951.8;ENST00000498077.6;ENST00000392981.6;ENST00000489241.1	10.814	7.029	10.880	0.92(8819)	0.981(689)	0.965(16773)	non tumor-specific	exon_skip	yes
VPS41_LS025	chr7:38774244|38776679:-	VPS41	VPS41 subunit of HOPS complex	protein coding gene	no	ENST00000310301.8;ENST00000395969.6;ENST00000466017.1	35.806	26.394	20.165	0.957(9165)	0.984(691)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_CDYL_LS0018	chr6:4819020|4891713:+	CDYL	chromodomain Y like	protein coding gene	no	.	0.359	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ELOVL1_LS0084	chr1:43364359|43364385:+	ELOVL1	ELOVL fatty acid elongase 1	protein coding gene	no	.	8.878	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIF2A_LS0021	chr5:62361790|62362450:+	KIF2A	kinesin family member 2A	protein coding gene	no	.	1.129	0.312	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_POLR2A_LS0134	chr17:7513243|7513328:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	2.804	0.559	0.000	0.014(137)	0.014(10)	0(0)	non tumor-specific	nAS	no
EDA_LS017	chrX:70030520|70033407:+	EDA	ectodysplasin A	protein coding gene	no	ENST00000524573.5	0.443	0.225	0.740	0.184(1766)	0.332(233)	0.252(4387)	non tumor-specific	alt_3prime;exon_skip	yes
WDR31_LS004	chr9:113320498|113321511:-	WDR31	WD repeat domain 31	protein coding gene	no	ENST00000341761.8;ENST00000374193.8;ENST00000374195.7;ENST00000465205.2	2.232	2.266	2.082	0.656(6281)	0.811(569)	0.796(13843)	non tumor-specific	alt_5prime	yes
ELK1_LS003	chrX:47637114|47637751:-	ELK1	ETS transcription factor ELK1	protein coding gene	yes	ENST00000247161.7;ENST00000376983.7	66.333	41.383	30.929	0.991(9497)	0.997(700)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RABL6_LS0112	chr9:136840908|136841099:-	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	.	2.048	0.145	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP1B1P1_LS0007	chr22:32124034|32128642:+	AP1B1P1	AP1B1 pseudogene 1	pseudogene	no	.	3.872	1.089	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	nAS	no
DDX49_LS011	chr19:18921964|18922326:+	DDX49	DEAD-box helicase 49	protein coding gene	no	ENST00000247003.8;ENST00000629999.2;ENST00000594021.5;ENST00000595858.5;ENST00000593361.5;ENST00000598972.5;ENST00000602113.5	41.943	22.378	37.138	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
AL160237.1_LS001	chr14:23729445|23729578:-	AL160237.1	-	lncRNA gene	no	ENST00000554526.1	0.064	0.000	0.623	0(2)	0(0)	0.001(10)	non tumor-specific	nAS	yes
LINC01288_LS001	chr8:34792965|34819272:+	LINC01288	long intergenic non-protein coding RNA 1288	lncRNA gene	no	ENST00000519189.1;ENST00000648617.1	9.129	0.000	0.861	0(2)	0(0)	0(5)	non tumor-specific	nAS	yes
COL26A1_LS001	chr7:101363190|101419977:+	COL26A1	collagen type XXVI alpha 1 chain	protein coding gene	no	ENST00000313669.11;ENST00000613501.1	4.469	1.952	2.007	0.233(2236)	0.246(173)	0.297(5165)	non tumor-specific	nAS	yes
ACOX1_LS012	chr17:75953620|75955566:-	ACOX1	acyl-CoA oxidase 1	protein coding gene	no	ENST00000293217.9;ENST00000572047.5;ENST00000573078.5;ENST00000301608.8;ENST00000589744.1	29.414	40.279	21.352	0.985(9442)	0.994(698)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
RASAL1_LS022	chr12:113115264|113115635:-	RASAL1	RAS protein activator like 1	protein coding gene	yes	ENST00000546530.5;ENST00000261729.9;ENST00000446861.7;ENST00000548055.1;ENST00000551051.5;ENST00000546727.5;ENST00000418411.6;ENST00000548972.5	14.296	14.051	16.736	0.623(5967)	0.611(429)	0.549(9544)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SEMA3A_LS0025	chr7:84143794|84194475:-	SEMA3A	semaphorin 3A	protein coding gene	no	.	2.410	0.347	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_VEPH1_LS0030	chr3:157470529|157493187:-	VEPH1	ventricular zone expressed PH domain containing 1	protein coding gene	no	.	1.400	1.085	0.000	0.027(259)	0.074(52)	0(0)	non tumor-specific	exon_skip	no
GUCY2C_LS008	chr12:14628737|14639862:-	GUCY2C	guanylate cyclase 2C	protein coding gene	yes	ENST00000261170.4	19.706	19.637	1.280	0.128(1227)	0.111(78)	0.172(2994)	non tumor-specific	nAS	yes
LPP_LS023	chr3:188472835|188484592:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	ENST00000474472.5	0.173	0.000	0.638	0.017(161)	0.017(12)	0.038(668)	non tumor-specific	nAS	yes
TRAFD1_LS009	chr12:112130569|112133140:+	TRAFD1	TRAF-type zinc finger domain containing 1	protein coding gene	no	ENST00000548092.5	0.006	0.016	0.628	0.197(1891)	0.248(174)	0.022(381)	non tumor-specific	exon_skip	yes
ADRA1A_LS006	chr8:26766149|26770281:-	ADRA1A	adrenoceptor alpha 1D	protein coding gene	no	ENST00000354550.4	0.597	0.148	0.680	0.013(125)	0.05(35)	0.014(250)	non tumor-specific	intron_retention	yes
PRSS16_LS033	chr6:27252949|27254986:+	PRSS16	serine protease 16	protein coding gene	no	ENST00000481125.5;ENST00000492575.5;ENST00000459736.5;ENST00000481125.5;ENST00000492575.5;ENST00000459736.5	0.478	0.477	1.380	0.64(6128)	0.769(540)	0.321(5586)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NBL1_LS0033	chr1:19657151|19657628:-	NBL1	NBL1, DAN family BMP antagonist	protein coding gene	no	.	3.962	3.270	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
LLGL2_LS015	chr17:75556143|75558155:+	LLGL2	LLGL scribble cell polarity complex component 2	protein coding gene	no	ENST00000580578.5;ENST00000167462.9;ENST00000375227.8;ENST00000392550.7;ENST00000578363.5;ENST00000579392.5;ENST00000577200.5;ENST00000578536.5;ENST00000581713.5;ENST00000583658.1	36.056	30.451	7.963	0.95(9099)	0.989(694)	0.93(16171)	non tumor-specific	nAS	yes
RGL2_LS024	chr6:33296464|33296598:-	RGL2	ral guanine nucleotide dissociation stimulator like 2	protein coding gene	no	ENST00000491168.5;ENST00000483151.5;ENST00000437840.6;ENST00000497454.5;ENST00000478610.5;ENST00000494550.5;ENST00000485077.5;ENST00000460988.1;ENST00000425946.1	49.544	29.040	82.247	0.991(9498)	0.996(699)	0.979(17020)	non tumor-specific	alt_5prime	yes
UN_ZNF34_LS0029	chr8:144781873|144787279:-	ZNF34	zinc finger protein 34	protein coding gene	no	.	1.217	0.090	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_EIF3CL_LS0043	chr16:28391997|28392062:-	EIF3CL	eukaryotic translation initiation factor 3 subunit C like	protein coding gene	no	.	73.687	3.592	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC104823.1_LS001	chr2:195448612|195455510:+	AC104823.1	-	lncRNA gene	no	ENST00000413290.1	5.976	0.729	0.753	0.033(320)	0.003(2)	0.002(33)	non tumor-specific	nAS	yes
UN_FAM47E-STBD1_LS0019	chr4:76290060|76291088:+	FAM47E-STBD1	FAM47E-STBD1 readthrough	protein coding gene	no	.	1.205	0.382	0.000	0.005(44)	0.013(9)	0(0)	non tumor-specific	nAS	no
RAB17_LS013	chr2:237577382|237586042:-	RAB17	RAB17, member RAS oncogene family	protein coding gene	no	.;.;.	2.517	0.528	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL512343.2_UP_LS0015	chr1:226127555|226134904:-	AL512343.2	-	lncRNA gene	no	.	2.236	1.101	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RASL10A_LS0009	chr22:29315496|29315865:-	RASL10A	RAS like family 10 member A	protein coding gene	yes	.	1.876	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NLRP1_LS0043	chr17:5533384|5536851:-	NLRP1	NLR family pyrin domain containing 1	protein coding gene	no	.	4.170	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
AL139220.2_LS031	chr1:44105514|44110394:+	AL139220.2	-	lncRNA gene	no	ENST00000627999.1	0.811	0.099	0.689	0.002(23)	0.001(1)	0.027(461)	non tumor-specific	nAS	yes
OXCT1_LS014	chr5:41807438|41840451:-	OXCT1	3-oxoacid CoA-transferase 1	protein coding gene	no	ENST00000196371.9;ENST00000509987.1	32.034	30.713	23.486	0.935(8958)	0.922(647)	0.965(16781)	non tumor-specific	exon_skip	yes
MALAT1_LS001	chr11:65497865|65498682:+	MALAT1	metastasis associated lung adenocarcinoma transcript 1	lncRNA gene	yes	ENST00000619449.2	0.775	0.043	0.630	0.011(107)	0.007(5)	0.025(431)	non tumor-specific	nAS	yes
UN_MARCH1_UP_LS0030	chr4:164920426|164921686:-	MARCH1	membrane associated ring-CH-type finger 1	protein coding gene	no	.	1.057	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NEXN_LS015	chr1:77942208|77942461:+	NEXN	nexilin F-actin binding protein	protein coding gene	no	ENST00000330010.12;ENST00000334785.11;ENST00000342754.5;ENST00000480732.2;ENST00000470735.1	12.772	23.299	44.957	0.906(8683)	0.933(655)	0.966(16788)	non tumor-specific	intron_retention	yes
AL513478.2_LS003	chr9:66162887|66164295:-	AL513478.2	-	lncRNA gene	no	ENST00000610400.1	1.207	0.000	0.709	0.004(38)	0(0)	0.007(128)	non tumor-specific	nAS	yes
TRMT2A_LS007	chr22:20113007|20113118:-	TRMT2A	tRNA methyltransferase 2 homolog A	protein coding gene	no	ENST00000252136.11;ENST00000403707.7;ENST00000444845.5;ENST00000404751.7;ENST00000487668.5;ENST00000439169.2;ENST00000487378.1;ENST00000494820.5	56.376	24.099	61.146	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SGTA_LS0011	chr19:2754973|2755150:+	SGTA	small glutamine rich tetratricopeptide repeat containing alpha	protein coding gene	no	.	2.737	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
PDLIM5_LS017	chr4:94576034|94585565:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	ENST00000317968.8;ENST00000627587.2;ENST00000542407.5;ENST00000513341.5	36.351	35.290	21.843	0.977(9365)	0.994(698)	0.977(16976)	non tumor-specific	exon_skip	yes
LAD1_LS020	chr1:201389303|201399878:-	LAD1	ladinin 1	protein coding gene	no	ENST00000631576.1	0.823	0.288	0.734	0(2)	0.001(1)	0.03(523)	non tumor-specific	nAS	yes
UN_UBQLN4_LS0031	chr1:156051793|156053594:-	UBQLN4	ubiquilin 4	protein coding gene	no	.	2.404	1.320	0.000	0.092(879)	0.085(60)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ALG1L5P_LS005	chr7:6926979|6928520:+	ALG1L5P	ALG1 like 5, pseudogene	pseudogene	no	ENST00000482043.1	2.597	0.259	0.702	0.05(475)	0.01(7)	0.017(290)	non tumor-specific	nAS	yes
UN_TUBA1C_LS0110	chr12:49272681|49273048:-	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	12.040	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ARAF_LS009	chrX:47564899|47564985:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8;ENST00000377039.2;ENST00000489496.1	106.518	79.073	78.616	0.993(9510)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
ALKBH3_LS020	chr11:43901725|43919042:+	ALKBH3	alkB homolog 3, alpha-ketoglutarate dependent dioxygenase	protein coding gene	no	ENST00000530803.5	0.420	0.147	0.716	0.069(657)	0.061(43)	0.16(2788)	non tumor-specific	alt_3prime	yes
ITIH1_LS027	chr3:52791628|52791782:+	ITIH1	inter-alpha-trypsin inhibitor heavy chain 1	protein coding gene	no	ENST00000273283.6;ENST00000628722.2;ENST00000537050.5;ENST00000428133.5;ENST00000405128.3;ENST00000494705.1	8.177	155.726	1.306	0.148(1422)	0.164(115)	0.449(7810)	non tumor-specific	alt_5prime	yes
LINC00477_LS001	chr12:24567208|24567662:-	LINC00477	long intergenic non-protein coding RNA 477	lncRNA gene	no	ENST00000483544.1	1.120	0.000	0.644	0(4)	0(0)	0.003(50)	non tumor-specific	nAS	yes
ZNF793_LS002	chr19:37507047|37508265:+	ZNF793	zinc finger protein 793	protein coding gene	no	ENST00000587143.5	0.341	0.273	1.315	0.097(932)	0.091(64)	0.27(4699)	non tumor-specific	alt_5prime	yes
PRG4_LS013	chr1:186311170|186311440:+	PRG4	proteoglycan 4	protein coding gene	no	ENST00000635041.1;ENST00000445192.6;ENST00000367483.8;ENST00000367485.4	45.333	42.720	6.778	0.195(1868)	0.409(287)	0.699(12153)	non tumor-specific	exon_skip	yes
SLC2A5_LS007	chr1:9040189|9041785:-	SLC2A5	solute carrier family 2 member 5	protein coding gene	no	ENST00000377424.8	12.359	10.979	3.191	0.743(7119)	0.672(472)	0.802(13944)	non tumor-specific	alt_3prime;intron_retention	yes
SH3D21_LS028	chr1:36320787|36320915:+	SH3D21	SH3 domain containing 21	protein coding gene	no	.;.	4.412	0.038	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
DPH7_LS030	chr9:137576402|137577577:-	DPH7	diphthamide biosynthesis 7	protein coding gene	no	ENST00000460572.1	0.401	0.215	0.685	0.134(1283)	0.078(55)	0.132(2289)	non tumor-specific	alt_5prime;exon_skip	yes
KRTCAP3_LS006	chr2:27443280|27443398:+	KRTCAP3	keratinocyte associated protein 3	protein coding gene	no	ENST00000543753.5;ENST00000288873.7;ENST00000453171.5;ENST00000407293.5;ENST00000464699.5;ENST00000494572.1	99.772	52.171	7.010	0.935(8959)	0.979(687)	0.95(16521)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
POMC_LS010	chr2:25165685|25168498:-	POMC	proopiomelanocortin	protein coding gene	no	ENST00000380794.5;ENST00000264708.7;ENST00000449220.1	3.862	0.093	1.101	0.075(718)	0.014(10)	0.269(4676)	non tumor-specific	exon_skip	yes
UN_AC009502.1_UP_LS0003	chr2:219683753|219684186:+	AC009502.1	-	lncRNA gene	no	.	3.439	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ARAF_LS019	chrX:47567432|47568718:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8	103.033	75.702	80.475	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
AL121972.1_LS003	chr6:73524546|73525886:+	AL121972.1	-	lncRNA gene	no	ENST00000429386.1	0.793	0.260	0.689	0.005(44)	0.004(3)	0.078(1352)	non tumor-specific	nAS	yes
LMTK3_LS014	chr19:48509513|48510023:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	ENST00000600059.5;ENST00000270238.3;ENST00000650440.1	6.476	6.456	2.004	0.118(1130)	0.16(112)	0.47(8168)	non tumor-specific	nAS	yes
TSR1_LS006	chr17:2329475|2330515:-	TSR1	TSR1 ribosome maturation factor	protein coding gene	no	ENST00000301364.9	70.769	33.176	28.886	0.995(9532)	0.997(700)	0.978(17000)	non tumor-specific	exon_skip	yes
IGF1R_LS035	chr15:98948708|98960834:+	IGF1R	insulin like growth factor 1 receptor	protein coding gene	yes	.;.	2.317	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
MORF4L1_LS028	chr15:78891014|78891484:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	ENST00000379535.8;ENST00000426013.6;ENST00000331268.9;ENST00000559930.5;ENST00000558746.5;ENST00000558893.5;ENST00000558830.5;ENST00000559345.5;ENST00000558502.5;ENST00000559690.5;ENST00000559158.5;ENST00000560422.5;ENST00000559244.5;ENST00000559751.1;ENST00000558923.5	225.884	177.728	489.345	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
UN_FOXK2_LS0049	chr17:82587272|82587535:+	FOXK2	forkhead box K2	protein coding gene	no	.	7.833	0.159	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
MORC2_LS030	chr22:30958694|30967822:-	MORC2	MORC family CW-type zinc finger 2	protein coding gene	no	ENST00000397641.7;ENST00000397641.7	19.007	10.941	13.301	0.896(8583)	0.907(637)	0.974(16924)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ANKRD28_LS0032	chr3:15738707|15772732:+	ANKRD28	ankyrin repeat domain 28	protein coding gene	no	.	1.863	0.354	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
EGFL6_LS003	chrX:13594928|13599975:+	EGFL6	EGF like domain multiple 6	protein coding gene	no	ENST00000361306.5;ENST00000380602.3	8.722	6.091	1.615	0.506(4848)	0.452(317)	0.34(5906)	non tumor-specific	exon_skip	yes
UN_NCF4_LS0012	chr22:36874124|36875653:+	NCF4	neutrophil cytosolic factor 4	protein coding gene	no	.	2.586	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
APEX1_LS025	chr14:20456101|20456668:+	APEX1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein coding gene	no	ENST00000555414.5;ENST00000216714.7;ENST00000553681.5;ENST00000554813.5;ENST00000557344.5;ENST00000555306.5;ENST00000553555.5;ENST00000398030.8;ENST00000554325.1;ENST00000557181.5;ENST00000555839.5;ENST00000557159.5;ENST00000556054.5;ENST00000557592.5;ENST00000557365.1;ENST00000557150.5;ENST00000438886.1	129.203	63.939	174.897	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ABCA9_LS016	chr17:68993084|68995895:-	ABCA9	ATP binding cassette subfamily A member 9	protein coding gene	no	ENST00000340001.8;ENST00000453985.6	2.983	3.675	9.811	0.176(1688)	0.638(448)	0.912(15844)	non tumor-specific	exon_skip;intron_retention	yes
SMG1P7_LS008	chr16:70226963|70227107:-	SMG1P7	SMG1 pseudogene 7	pseudogene	no	ENST00000565246.6	6.476	0.000	0.641	0.001(8)	0(0)	0.002(34)	non tumor-specific	nAS	yes
UN_SLC7A2_LS0001	chr8:17497237|17501035:+	SLC7A2	solute carrier family 7 member 2	protein coding gene	no	.	1.152	0.137	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SMG1_LS052	chr16:18872345|18872494:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	ENST00000446231.6;ENST00000565324.5;ENST00000563235.5;ENST00000568038.1	5.673	2.731	3.684	0.731(7004)	0.839(589)	0.85(14770)	non tumor-specific	nAS	yes
UN_BRI3_LS0010	chr7:98267361|98268391:-	BRI3	integral membrane protein 2C	protein coding gene	no	.	1.820	0.621	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02024_LS002	chr3:117680972|117689955:-	LINC02024	long intergenic non-protein coding RNA 2024	lncRNA gene	no	ENST00000493545.1	1.638	0.000	0.690	0(1)	0(0)	0.003(53)	non tumor-specific	nAS	yes
LINC01828_LS018	chr2:67283519|67287756:+	LINC01828	long intergenic non-protein coding RNA 1828	lncRNA gene	no	ENST00000630617.2	0.507	0.000	0.635	0.001(5)	0(0)	0.012(209)	non tumor-specific	nAS	yes
MAPK4_LS002	chr18:50560243|50715079:+	MAPK4	mitogen-activated protein kinase 4	protein coding gene	no	ENST00000540640.3	0.148	0.065	0.876	0.114(1090)	0.249(175)	0.071(1230)	non tumor-specific	exon_skip	yes
ST3GAL1_LS020	chr8:133539729|133545774:-	ST3GAL1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein coding gene	no	ENST00000648219.1;ENST00000522873.1	0.124	0.106	0.958	0.373(3577)	0.524(368)	0.414(7200)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DKK3_LS0026	chr11:11964535|11965857:+	DKK3	dickkopf WNT signaling pathway inhibitor 3	protein coding gene	yes	.	1.208	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
VPS28_LS014	chr8:144425772|144425875:-	VPS28	VPS28 subunit of ESCRT-I	protein coding gene	no	ENST00000526204.5	9.088	2.500	5.813	0.15(1438)	0.127(89)	0.962(16723)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC013270.1_LS002	chr2:96529849|96532227:-	AC013270.1	-	lncRNA gene	no	ENST00000425578.1	0.838	0.205	0.821	0.078(752)	0.061(43)	0.114(1987)	non tumor-specific	nAS	yes
UN_SHISA5_LS0052	chr3:48468348|48468376:+	SHISA5	shisa family member 5	protein coding gene	no	.	14.080	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NRSN2-AS1_LS0003	chr20:320781|325142:-	NRSN2-AS1	NRSN2 antisense RNA 1	lncRNA gene	no	.	0.956	0.149	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACYBP_LS002	chr1:174999689|175004614:+	CACYBP	calcyclin binding protein	protein coding gene	no	ENST00000613570.4;ENST00000461977.1	0.917	0.744	3.220	0.915(8766)	0.949(666)	0.915(15905)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRKCZ_LS0006	chr1:2055545|2056484:+	PRKCZ	protein kinase C zeta	protein coding gene	no	.	2.860	0.748	0.000	0.01(93)	0.014(10)	0(0)	non tumor-specific	alt_5prime	no
ABCC8_LS030	chr11:17407209|17407354:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000646592.1;ENST00000643925.1;ENST00000645884.1	3.117	0.398	0.000	0.007(68)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TNRC18_LS024	chr7:5359569|5361897:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	ENST00000440081.2	2.292	1.087	6.751	0.887(8501)	0.87(611)	0.965(16769)	non tumor-specific	exon_skip	yes
DTD1_LS003	chr20:18596241|18628127:+	DTD1	D-aminoacyl-tRNA deacylase 1	protein coding gene	no	ENST00000377452.3;ENST00000494921.2	108.192	52.461	49.622	0.997(9548)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_OTX2-AS1_LS0014	chr14:56954584|56963463:-	OTX2-AS1	OTX2 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.148	1.258	0.000	0.002(19)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC008014.1_LS0013	chr12:46387972|46571256:+	AC008014.1	-	lncRNA gene	no	.	2.844	0.558	0.000	0.014(131)	0.011(8)	0(0)	non tumor-specific	nAS	no
CDH3_LS024	chr16:68695923|68722425:+	CDH3	cadherin 15	protein coding gene	no	ENST00000569080.1	0.527	0.233	1.287	0.537(5143)	0.563(395)	0.244(4245)	non tumor-specific	alt_3prime;exon_skip	yes
PLRG1_LS028	chr4:154548935|154550300:-	PLRG1	pleiotropic regulator 1	protein coding gene	no	ENST00000499023.6;ENST00000302078.9;ENST00000506192.5;ENST00000512719.5;ENST00000503751.5;ENST00000515520.1;ENST00000499023.6;ENST00000302078.9;ENST00000506192.5;ENST00000512719.5;ENST00000503751.5;ENST00000515520.1	36.309	26.681	39.140	0.984(9427)	0.994(698)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FBXO45_LS0013	chr3:196585564|196585964:-	FBXO45	F-box protein 45	protein coding gene	no	.	0.870	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RUNX1_LS0150	chr21:35864467|35943381:-	RUNX1	RUNX family transcription factor 1	protein coding gene	yes	.	3.225	0.330	0.000	0.007(70)	0.007(5)	0(0)	non tumor-specific	nAS	no
LUC7L3_LS022	chr17:50744813|50745720:+	LUC7L3	LUC7 like 3 pre-mRNA splicing factor	protein coding gene	no	ENST00000505658.5;ENST00000393227.6;ENST00000240304.5;ENST00000508482.5;ENST00000504065.5	29.445	20.245	196.142	0.994(9526)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC02428_LS0014	chr4:103293960|103343092:+	LINC02428	long intergenic non-protein coding RNA 2428	lncRNA gene	no	.	2.445	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SYNPR_LS011	chr3:63351615|63480832:+	SYNPR	synaptoporin	protein coding gene	no	ENST00000493532.5	0.001	0.001	1.193	0.041(389)	0.019(13)	0.033(568)	non tumor-specific	nAS	yes
TTC28_LS010	chr22:27992663|27993287:-	TTC28	tetratricopeptide repeat domain 28	protein coding gene	no	ENST00000612946.4;ENST00000397906.6;ENST00000431039.1;ENST00000469670.1	3.677	3.501	6.856	0.813(7792)	0.927(651)	0.909(15800)	non tumor-specific	exon_skip	yes
UN_LINC00668_LS0013	chr18:6929560|6929739:-	LINC00668	long intergenic non-protein coding RNA 668	lncRNA gene	no	.	3.063	0.509	0.000	0.032(304)	0.041(29)	0(0)	non tumor-specific	nAS	no
CAPN3_LS036	chr15:42405943|42408211:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000397163.7;ENST00000397200.8;ENST00000567071.5;ENST00000569136.5;ENST00000565559.5;ENST00000565274.5;ENST00000318023.11;ENST00000397163.7;ENST00000397200.8;ENST00000567071.5;ENST00000569136.5;ENST00000565559.5;ENST00000565274.5	31.617	1.921	17.153	0.591(5661)	0.708(497)	0.944(16407)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_PHF14_LS0055	chr7:11164391|11169416:+	PHF14	PHD finger protein 14	protein coding gene	no	.	3.210	0.114	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MSH6_LS032	chr2:47806358|47806452:+	MSH6	mutS homolog 6	protein coding gene	no	ENST00000614496.4;ENST00000540021.5;ENST00000622629.4;ENST00000445503.5;ENST00000234420.9;ENST00000538136.1	130.219	44.526	51.836	0.998(9558)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AZI2_LS001	chr3:28315171|28319202:-	AZI2	5-azacytidine induced 2	protein coding gene	no	ENST00000429369.5	0.025	0.016	0.655	0.01(100)	0.016(11)	0.005(79)	non tumor-specific	nAS	yes
STARD13-AS_LS020	chr13:33274058|33277440:+	STARD13-AS	STARD13 antisense RNA	lncRNA gene	no	ENST00000628131.2;ENST00000609233.5;ENST00000609137.5;ENST00000608205.5;ENST00000609608.5;ENST00000609997.5	0.836	0.000	0.708	0.001(5)	0(0)	0.002(42)	non tumor-specific	nAS	yes
PIK3CA_LS002	chr3:179148603|179198750:+	PIK3CA	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein coding gene	yes	ENST00000263967.3;ENST00000643187.1	1.457	1.335	2.057	0.722(6920)	0.853(599)	0.789(13707)	non tumor-specific	exon_skip	yes
GYPA_LS008	chr4:144118752|144140599:-	GYPA	glycophorin A (MNS blood group)	protein coding gene	no	ENST00000512789.5	0.128	0.000	0.784	0.006(59)	0(0)	0.006(109)	non tumor-specific	nAS	yes
FAM234B_LS017	chr12:13080914|13083003:+	FAM234B	family with sequence similarity 234 member B	protein coding gene	no	ENST00000416494.6	0.936	0.398	0.723	0.24(2299)	0.246(173)	0.072(1252)	non tumor-specific	alt_5prime;intron_retention	yes
TRAPPC9_LS031	chr8:140360193|140370964:-	TRAPPC9	trafficking protein particle complex 9	protein coding gene	no	ENST00000648948.1;ENST00000438773.3;ENST00000389328.8;ENST00000520857.5;ENST00000649035.1	18.926	12.606	15.388	0.978(9374)	0.989(694)	0.978(17002)	non tumor-specific	exon_skip	yes
AC106744.1_LS001	chr5:18966231|19142058:-	AC106744.1	-	lncRNA gene	no	ENST00000504827.1	0.299	0.000	0.987	0.006(55)	0(0)	0(1)	non tumor-specific	nAS	yes
UN_RNU6ATAC28P_UP_LS0032	chr14:83289576|83303810:+	RNU6ATAC28P	RNA, U6atac small nuclear 28, pseudogene	small non-coding RNA gene	no	.	4.516	0.578	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC087258.1_LS003	chr12:23185542|23188127:+	AC087258.1	-	lncRNA gene	no	ENST00000534841.1	1.074	0.000	0.845	0.006(58)	0(0)	0.016(277)	non tumor-specific	nAS	yes
UN_KCTD21-AS1_UP_LS0005	chr11:78081441|78085620:+	KCTD21-AS1	KCTD21 antisense RNA 1	lncRNA gene	no	.	1.958	1.084	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
OBSCN_LS126	chr1:228356344|228359597:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000474237.1;ENST00000474237.1	0.517	0.411	1.207	0.361(3457)	0.39(274)	0.324(5627)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PSMD12_LS0013	chr17:67347241|67347336:-	PSMD12	proteasome 26S subunit, non-ATPase 12	protein coding gene	no	.	9.109	1.751	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
NEB_LS085	chr2:151540801|151541447:-	NEB	nebulin	protein coding gene	no	ENST00000409198.5;ENST00000427231.6;ENST00000618972.4;ENST00000397345.7;ENST00000172853.14;ENST00000413693.5;ENST00000604864.5;ENST00000603639.5	5.804	114.910	1.619	0.135(1289)	0.154(108)	0.67(11640)	non tumor-specific	nAS	yes
UN_MMP9_LS0011	chr20:46011751|46012142:-	MMP9	matrix metallopeptidase 9	protein coding gene	no	.	31.378	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOXB3_LS0083	chr17:48579443|48590125:-	HOXB3	homeobox B3	protein coding gene	no	.	2.476	0.884	0.000	0.005(48)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_OSMR_LS0033	chr5:38932535|38932875:+	OSMR	oncostatin M receptor	protein coding gene	no	.	12.966	0.437	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
CCDC30_LS035	chr1:42589483|42610978:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000477155.5;ENST00000340612.5;ENST00000428554.6;ENST00000507855.5;ENST00000471390.5;ENST00000342022.8	3.291	2.842	2.161	0.295(2829)	0.517(363)	0.748(13000)	non tumor-specific	alt_5prime	yes
UN_FOXO6_LS0009	chr1:41375811|41375994:-	FOXO6	forkhead box O6	protein coding gene	yes	.	3.780	0.723	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ARPC5L_LS0012	chr9:124864107|124868671:+	ARPC5L	actin related protein 2/3 complex subunit 5 like	protein coding gene	no	.	0.740	0.295	0.000	0.018(177)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
ZNF583_LS009	chr19:56414440|56422891:+	ZNF583	zinc finger protein 583	protein coding gene	no	ENST00000537943.5;ENST00000291598.11;ENST00000333201.13;ENST00000391778.3	3.479	2.248	2.918	0.692(6630)	0.853(599)	0.873(15172)	non tumor-specific	exon_skip	yes
RAB31_LS003	chr18:9708444|9792154:+	RAB31	RAB31, member RAS oncogene family	protein coding gene	no	ENST00000578734.5	0.534	0.541	0.990	0.674(6461)	0.746(524)	0.426(7398)	non tumor-specific	exon_skip	yes
DPP7_LS007	chr9:137111754|137112112:-	DPP7	dipeptidyl peptidase 7	protein coding gene	no	ENST00000470766.5;ENST00000470766.5	0.893	0.522	2.547	0.852(8163)	0.842(591)	0.814(14146)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TPBG_LS0019	chr6:82365246|82365334:-	TPBG	trophoblast glycoprotein	protein coding gene	no	.	1.455	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZFP36_LS0004	chr19:39406928|39407745:+	ZFP36	ZFP36 ring finger protein	protein coding gene	yes	.	32.123	7.135	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UBE2V2_LS008	chr8:48035061|48043033:+	UBE2V2	ubiquitin conjugating enzyme E2 V2	protein coding gene	no	ENST00000521346.5	0.334	0.190	0.910	0.354(3391)	0.34(239)	0.472(8202)	non tumor-specific	exon_skip;mutex_exons	yes
VWA3B_LS041	chr2:98250436|98256124:+	VWA3B	von Willebrand factor A domain containing 3B	protein coding gene	no	ENST00000432242.5;ENST00000409460.5;ENST00000477737.5;ENST00000495571.5;ENST00000489630.5;ENST00000473149.5;ENST00000490947.2;ENST00000614454.1	3.173	3.302	1.055	0.075(718)	0.138(97)	0.159(2768)	non tumor-specific	exon_skip	yes
SLC12A9_LS029	chr7:100855837|100858835:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	.;.;.	2.540	0.550	0.000	0.015(141)	0.014(10)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
BPIFB5P_LS003	chr20:33323346|33323775:+	BPIFB5P	BPI fold containing family B member 5, pseudogene	pseudogene	no	ENST00000457066.1	3.679	0.000	1.148	0(3)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_QSOX1_LS0127	chr1:180196629|180197305:-	QSOX1	quiescin sulfhydryl oxidase 1	protein coding gene	no	.	2.829	2.705	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
WDR74_LS019	chr11:62839428|62839507:-	WDR74	WD repeat domain 74	protein coding gene	no	ENST00000311713.11;ENST00000278856.8;ENST00000529106.5;ENST00000525239.5;ENST00000541930.5;ENST00000540620.5;ENST00000453708.6;ENST00000538277.1;ENST00000538098.2	18.694	10.024	30.934	0.985(9434)	0.984(691)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
DDX3Y_LS012	chrY:12914649|12915067:+	DDX3Y	DEAD-box helicase 3 Y-linked	protein coding gene	no	.;.;.	2.317	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TICRR_LS003	chr15:89582965|89584289:+	TICRR	TOPBP1 interacting checkpoint and replication regulator	protein coding gene	no	ENST00000560985.5	3.029	0.220	0.837	0.245(2347)	0.036(25)	0.079(1380)	non tumor-specific	alt_3prime	yes
UN_AP000679.1_UP_LS0046	chr11:119929656|119938067:+	AP000679.1	-	lncRNA gene	no	.	4.716	2.134	0.000	0.053(508)	0.111(78)	0(0)	non tumor-specific	nAS	no
UN_SPECC1_LS0036	chr17:20231831|20232323:+	SPECC1	sperm antigen with calponin homology and coiled-coil domains 1	protein coding gene	no	.	1.635	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
STAU2_LS037	chr8:73697442|73738284:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000521419.5	0.028	0.036	0.704	0.023(220)	0.033(23)	0.111(1923)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BCAT2_LS0014	chr19:48806710|48807000:-	BCAT2	branched chain amino acid transaminase 2	protein coding gene	no	.	5.117	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
KIAA2026_LS002	chr9:5881675|5913858:-	KIAA2026	KIAA2026	protein coding gene	no	.;.	2.597	0.063	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PLCE1_LS027	chr10:94308699|94313254:+	PLCE1	phospholipase C epsilon 1	protein coding gene	yes	ENST00000371380.7;ENST00000371385.7;ENST00000371375.1	9.160	12.231	12.394	0.754(7223)	0.856(601)	0.915(15905)	non tumor-specific	nAS	yes
DIP2A_LS005	chr21:46497107|46504361:+	DIP2A	disco interacting protein 2 homolog A	protein coding gene	no	.;.	2.741	0.430	0.000	0.001(11)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PRKN_LS020	chr6:162443473|162727662:-	PRKN	parkin RBR E3 ubiquitin protein ligase	protein coding gene	no	ENST00000366898.5;ENST00000366897.5;ENST00000366896.5;ENST00000366894.5;ENST00000338468.7;ENST00000366892.5	2.198	2.465	1.763	0.32(3067)	0.679(477)	0.721(12533)	non tumor-specific	exon_skip	yes
AMD1_LS006	chr6:110887591|110888857:+	AMD1	adenosylmethionine decarboxylase 1	protein coding gene	no	ENST00000368885.7;ENST00000368876.2	97.216	82.721	32.978	0.986(9443)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
MGST1_LS027	chr12:16383604|16609094:+	MGST1	microsomal glutathione S-transferase 1	protein coding gene	no	ENST00000539036.5	0.043	0.015	0.692	0.101(971)	0.103(72)	0.08(1386)	non tumor-specific	nAS	yes
UN_INTS11_LS0052	chr1:1315142|1315179:+	INTS11	integrator complex subunit 11	protein coding gene	no	.	2.464	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HES6_LS0018	chr2:238239017|238239073:+	HES6	hes family bHLH transcription factor 6	protein coding gene	yes	.	4.898	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
RPS24_LS010	chr10:78035720|78037194:+	RPS24	ribosomal protein S24	protein coding gene	no	ENST00000647545.1;ENST00000435275.5;ENST00000613865.5;ENST00000645440.1;ENST00000478655.6;ENST00000485708.7;ENST00000464716.6;ENST00000360830.9;ENST00000372360.8;ENST00000440692.6;ENST00000645698.1;ENST00000476545.6;ENST00000465692.2;ENST00000475468.6;ENST00000482069.5;ENST00000645195.1;ENST00000647545.1;ENST00000435275.5;ENST00000613865.5;ENST00000645440.1;ENST00000478655.6;ENST00000485708.7;ENST00000464716.6;ENST00000360830.9;ENST00000372360.8;ENST00000440692.6;ENST00000645698.1;ENST00000476545.6;ENST00000465692.2;ENST00000475468.6;ENST00000482069.5;ENST00000645195.1	5960.777	2875.182	4220.427	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_SIPA1_LS0009	chr11:65638420|65638535:+	SIPA1	signal-induced proliferation-associated 1	protein coding gene	no	.	0.641	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_WDR4_LS0012	chr21:42848341|42848637:-	WDR4	WD repeat domain 4	protein coding gene	no	.	4.945	0.943	0.000	0.024(226)	0.011(8)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ANKRD11_LS0211	chr16:89300133|89300242:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	.	4.241	0.941	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
EIF4G1_LS006	chr3:184315545|184315763:+	EIF4G1	eukaryotic translation initiation factor 4 gamma 1	protein coding gene	no	ENST00000346169.6;ENST00000414031.5;ENST00000382330.7;ENST00000413967.5;ENST00000426123.5;ENST00000485712.5;ENST00000440448.5;ENST00000427141.6;ENST00000342981.8	25.602	18.133	17.823	0.985(9437)	0.99(695)	0.975(16949)	non tumor-specific	intron_retention	yes
UN_RNF38_LS0048	chr9:36421660|36424613:-	RNF38	ring finger protein 38	protein coding gene	no	.	2.389	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC112229.4_LS0016	chr2:110389779|110390760:-	AC112229.4	-	lncRNA gene	no	.	3.046	0.024	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDC123_LS018	chr10:12237534|12238457:+	CDC123	cell division cycle 123	protein coding gene	no	ENST00000498747.1	0.046	0.016	0.651	0.024(227)	0.013(9)	0.012(208)	non tumor-specific	exon_skip	yes
MYLK_LS035	chr3:123737543|123738897:-	MYLK	myosin light chain kinase	protein coding gene	no	ENST00000360772.7;ENST00000354792.9;ENST00000359169.5;ENST00000360304.7;ENST00000464489.5;ENST00000346322.9;ENST00000475616.5;ENST00000506361.5	5.604	9.574	2.908	0.553(5299)	0.805(565)	0.613(10658)	non tumor-specific	nAS	yes
ANKRD12_LS025	chr18:9279644|9280941:+	ANKRD12	ankyrin repeat domain 12	protein coding gene	no	ENST00000262126.8;ENST00000400020.7	16.595	12.752	21.283	0.927(8878)	0.983(690)	0.977(16988)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00476_LS0026	chr9:95850292|95874509:-	LINC00476	long intergenic non-protein coding RNA 476	lncRNA gene	no	.	1.035	0.165	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
CNTNAP5_LS013	chr2:124609920|124647758:+	CNTNAP5	contactin associated protein family member 5	protein coding gene	no	ENST00000431078.1	5.243	0.568	1.127	0.051(484)	0.021(15)	0.066(1151)	non tumor-specific	exon_skip	yes
LYST_LS014	chr1:235716778|235720661:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000389793.6;ENST00000473037.5;ENST00000389794.7;ENST00000475277.1	6.384	2.920	8.752	0.812(7784)	0.929(652)	0.967(16811)	non tumor-specific	exon_skip	yes
NOL8_LS035	chr9:92323503|92325306:-	NOL8	nucleolar protein 8	protein coding gene	no	ENST00000542053.5;ENST00000542053.5	0.029	0.024	0.661	0.173(1657)	0.221(155)	0.159(2765)	non tumor-specific	alt_5prime;exon_skip	yes
MYO18B_LS045	chr22:25955364|25992363:+	MYO18B	myosin XVIIIB	protein coding gene	yes	ENST00000536101.5;ENST00000335473.11;ENST00000407587.6;ENST00000539302.5;ENST00000418374.6;ENST00000543971.1	5.374	5.654	1.778	0.079(759)	0.066(46)	0.399(6942)	non tumor-specific	nAS	yes
UN_TMEM177_LS0008	chr2:119682053|119685658:+	TMEM177	transmembrane protein 177	protein coding gene	no	.	3.182	1.242	0.000	0.059(561)	0.064(45)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SLC18A1_LS023	chr8:20171494|20173036:-	SLC18A1	solute carrier family 18 member A1	protein coding gene	no	ENST00000265808.11;ENST00000276373.9;ENST00000440926.3;ENST00000437980.3;ENST00000517776.5;ENST00000519026.5;ENST00000381608.8;ENST00000522513.5;ENST00000524272.1	22.763	2.474	0.935	0.062(596)	0.07(49)	0.075(1297)	non tumor-specific	nAS	yes
UN_TPD52L1_LS0025	chr6:125219806|125220078:+	TPD52L1	TPD52 like 1	protein coding gene	no	.	2.164	0.357	0.000	0.031(297)	0.088(62)	0(0)	non tumor-specific	alt_5prime	no
KIF21A_LS017	chr12:39320013|39321348:-	KIF21A	kinesin family member 21A	protein coding gene	no	ENST00000547108.5	0.191	0.324	3.162	0.423(4054)	0.591(415)	0.717(12456)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PRKCA_LS0030	chr17:66618346|66621942:-	PRKCA	protein kinase C alpha	protein coding gene	yes	.	11.065	0.419	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF183_LS010	chr9:113301888|113302195:-	RNF183	ring finger protein 183	protein coding gene	no	.;.;.	1.909	0.326	0.000	0.011(107)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02391_LS0009	chr12:92268979|92337465:-	LINC02391	long intergenic non-protein coding RNA 2391	lncRNA gene	no	.	1.524	0.175	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GALK2_LS0019	chr15:49308777|49319604:+	GALK2	galactokinase 2	protein coding gene	no	.	2.185	0.156	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LINC02434_LS001	chr4:188160102|188160501:+	LINC02434	long intergenic non-protein coding RNA 2434	lncRNA gene	no	ENST00000502419.1	0.277	0.002	1.005	0.011(104)	0.001(1)	0(4)	non tumor-specific	nAS	yes
UN_COL1A1_LS0179	chr17:50185429|50185519:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	128.376	7.120	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRIM51_LS0001	chr11:55883384|55885298:+	TRIM51	tripartite motif-containing 51	protein coding gene	no	.	0.761	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02015_LS0013	chr3:177844145|177895613:+	LINC02015	long intergenic non-protein coding RNA 2015	lncRNA gene	no	.	1.106	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HIBADH_LS0056	chr7:27649618|27662698:-	HIBADH	3-hydroxyisobutyrate dehydrogenase	protein coding gene	no	.	27.396	1.715	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_ABHD14B_LS0025	chr3:51969054|51969103:+	ABHD14B	abhydrolase domain containing 14B	protein coding gene	no	.	3.517	0.661	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
CYP24A1_LS009	chr20:54158164|54158957:-	CYP24A1	cytochrome P450 family 24 subfamily A member 1	protein coding gene	yes	ENST00000216862.7;ENST00000395955.7;ENST00000395954.3	7.853	7.495	1.442	0.342(3279)	0.402(282)	0.19(3295)	non tumor-specific	nAS	yes
C12orf73_LS006	chr12:103953534|103954875:-	C12orf73	chromosome 12 open reading frame 73	protein coding gene	no	ENST00000549960.5;ENST00000552460.1	0.073	0.161	1.966	0.729(6981)	0.695(488)	0.786(13669)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZBTB18_LS008	chr1:244051444|244053788:+	ZBTB18	zinc finger and BTB domain containing 18	protein coding gene	yes	ENST00000358704.4;ENST00000358704.4	0.236	0.296	1.052	0.243(2325)	0.266(187)	0.223(3879)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
POC1A_LS010	chr3:52149987|52151016:-	POC1A	POC1 centriolar protein A	protein coding gene	no	ENST00000296484.6;ENST00000394970.6;ENST00000474012.1	9.916	2.429	2.106	0.94(9004)	0.883(620)	0.833(14484)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC012617.1_UP_LS0005	chr19:36269622|36272146:+	AC012617.1	-	lncRNA gene	no	.	11.035	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POP4_LS0004	chr19:29612178|29613910:+	POP4	POP4 homolog, ribonuclease P/MRP subunit	protein coding gene	no	.	11.996	0.216	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ENG_LS0035	chr9:127815654|127815943:-	ENG	endoglin	protein coding gene	no	.	36.178	1.314	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_ATP6AP2_LS0007	chrX:40590944|40591234:+	ATP6AP2	ATPase H+ transporting accessory protein 2	protein coding gene	no	.	1.893	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FRMD8_LS0039	chr11:65405336|65411242:+	FRMD8	FERM domain containing 8	protein coding gene	no	.	5.085	0.250	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC087667.1_LS002	chr8:126327386|126328308:+	AC087667.1	-	lncRNA gene	no	ENST00000500180.2	2.085	0.000	0.656	0.012(117)	0(0)	0.01(170)	non tumor-specific	nAS	yes
EP400P1_LS017	chr12:132104170|132104378:+	EP400P1	EP400 pseudogene 1	pseudogene	no	ENST00000454179.6;ENST00000389560.6;ENST00000539205.5	1.475	0.524	4.888	0.633(6063)	0.487(342)	0.938(16298)	non tumor-specific	alt_3prime;intron_retention	yes
POLD1_LS026	chr19:50408901|50409122:+	POLD1	DNA polymerase delta 1, catalytic subunit	protein coding gene	no	ENST00000600859.5;ENST00000440232.6;ENST00000613923.5;ENST00000643407.1;ENST00000595904.6;ENST00000599857.6;ENST00000644560.1;ENST00000596425.1	35.209	9.378	14.565	0.985(9442)	0.987(693)	0.978(16999)	non tumor-specific	alt_3prime	yes
FMO3_LS007	chr1:171092790|171103785:+	FMO3	flavin containing dimethylaniline monoxygenase 3	protein coding gene	no	ENST00000367755.8;ENST00000479749.1	9.763	21.309	2.760	0.517(4951)	0.665(467)	0.706(12268)	non tumor-specific	alt_3prime;exon_skip	yes
TRIM2_LS006	chr4:153152612|153270338:+	TRIM2	tripartite motif containing 2	protein coding gene	no	ENST00000441616.5;ENST00000441616.5;ENST00000441616.5	0.348	0.310	0.841	0.295(2830)	0.462(324)	0.144(2510)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
IL10RB_LS001	chr21:33266514|33268394:+	IL10RB	interleukin 10 receptor subunit beta	protein coding gene	no	ENST00000290200.6;ENST00000422891.5	19.836	15.787	12.430	0.949(9094)	0.97(681)	0.966(16794)	non tumor-specific	intron_retention	yes
PIH1D1_LS024	chr19:49449654|49450782:-	PIH1D1	PIH1 domain containing 1	protein coding gene	no	ENST00000596916.5;ENST00000262265.9;ENST00000596049.5;ENST00000601807.5;ENST00000601053.5;ENST00000595516.5;ENST00000599366.5;ENST00000597415.5;ENST00000593900.5;ENST00000595074.1;ENST00000599791.1;ENST00000601825.1	104.266	56.140	111.947	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL355499.1_LS0021	chr6:8185416|8194378:+	AL355499.1	-	no	no	.	0.791	0.889	0.000	0.002(23)	0.026(18)	0(0)	non tumor-specific	nAS	no
FAM110B_LS011	chr8:58077214|58145907:+	FAM110B	family with sequence similarity 110 member B	protein coding gene	no	ENST00000522059.5;ENST00000521413.1	0.094	0.002	0.620	0.139(1331)	0.148(104)	0.035(606)	non tumor-specific	exon_skip	yes
UN_ATXN2L_LS0039	chr16:28832399|28832817:+	ATXN2L	ataxin 2 like	protein coding gene	no	.	7.125	0.508	0.000	0.015(139)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GLP1R_LS011	chr6:39079702|39080698:+	GLP1R	glucagon like peptide 1 receptor	protein coding gene	no	ENST00000373256.4	3.503	0.663	1.350	0.088(846)	0.08(56)	0.259(4495)	non tumor-specific	nAS	yes
POLR2B_LS009	chr4:56986426|56994404:+	POLR2B	RNA polymerase II subunit B	protein coding gene	no	ENST00000431623.6;ENST00000639658.1	0.125	0.120	1.061	0.584(5592)	0.688(483)	0.554(9635)	non tumor-specific	exon_skip	yes
UN_AC090578.1_LS0031	chr8:88842847|88847184:-	AC090578.1	-	lncRNA gene	no	.	2.559	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AC098487.1_LS007	chr4:102419794|102430397:-	AC098487.1	-	lncRNA gene	no	ENST00000506972.1	0.297	0.151	0.808	0.14(1338)	0.123(86)	0.269(4670)	non tumor-specific	exon_skip	yes
ATRIP_LS002	chr3:48447092|48450037:+	ATRIP	ATR interacting protein	protein coding gene	no	ENST00000346691.9;ENST00000320211.9;ENST00000635464.1	3.082	1.540	3.520	0.916(8777)	0.936(657)	0.916(15919)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BLM_LS0003	chr15:90717440|90724038:+	BLM	BLM RecQ like helicase	protein coding gene	yes	.	0.532	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPSTI1_LS0003	chr13:42892003|42897404:+	EPSTI1	epithelial stromal interaction 1	protein coding gene	no	.	1.843	0.089	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DOCK7_LS0027	chr1:62577363|62577762:-	DOCK7	dedicator of cytokinesis 7	protein coding gene	no	.	0.775	0.037	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02198_LS002	chr5:69027111|69027921:-	LINC02198	long intergenic non-protein coding RNA 2198	lncRNA gene	no	ENST00000504280.1	0.801	0.000	0.668	0.001(14)	0(0)	0.002(41)	non tumor-specific	nAS	yes
PSMC3IP_LS004	chr17:42573587|42574099:-	PSMC3IP	PSMC3 interacting protein	protein coding gene	no	ENST00000253789.9	0.124	0.113	0.795	0.65(6231)	0.437(307)	0.311(5402)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
FLNA_LS017	chrX:154351950|154353393:-	FLNA	filamin A	protein coding gene	yes	ENST00000610817.4	0.092	0.098	0.725	0.008(80)	0.02(14)	0.166(2882)	non tumor-specific	nAS	yes
AL355312.2_LS002	chr6:149798161|149799056:-	AL355312.2	-	lncRNA gene	no	ENST00000622897.2	0.270	0.017	0.618	0.008(79)	0.004(3)	0.002(34)	non tumor-specific	nAS	yes
UN_LINC02532_LS0020	chr6:106730712|106737538:+	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	.	5.038	0.441	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_STAT6_LS0072	chr12:57096639|57098514:+	STAT6	signal transducer and activator of transcription 6	protein coding gene	no	.	1.962	0.104	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF445_LS0011	chr3:44448736|44449513:-	ZNF445	zinc finger protein 445	protein coding gene	no	.	2.625	0.591	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_UTRN_LS0045	chr6:144539445|144542795:+	UTRN	utrophin	protein coding gene	no	.	2.316	0.392	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
OSBPL8_LS021	chr12:76410634|76422511:-	OSBPL8	oxysterol binding protein like 8	protein coding gene	no	ENST00000546946.5	0.007	0.063	1.031	0.229(2190)	0.269(189)	0.115(2005)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LIPT2_LS0003	chr11:74492364|74493149:-	LIPT2	lipoyl(octanoyl) transferase 2	protein coding gene	no	.	0.691	0.073	0.000	0.017(164)	0.016(11)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
SIGLEC6_LS013	chr19:51531411|51531582:-	SIGLEC6	sialic acid binding Ig like lectin 6	protein coding gene	no	ENST00000436458.5;ENST00000496422.5	0.117	0.040	0.711	0.06(578)	0.11(77)	0.081(1410)	non tumor-specific	alt_3prime;intron_retention	yes
ABHD11_LS013	chr7:73737220|73737562:-	ABHD11	abhydrolase domain containing 11	protein coding gene	no	ENST00000412965.5	0.209	0.113	1.533	0.856(8202)	0.853(599)	0.667(11589)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
CYBA_LS010	chr16:88647175|88648045:-	CYBA	cytochrome b-245 alpha chain	protein coding gene	no	ENST00000261623.7;ENST00000566534.5;ENST00000566229.1;ENST00000567174.5;ENST00000569359.5;ENST00000563526.5;ENST00000568278.1;ENST00000562209.1	540.900	261.436	119.391	0.997(9556)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
AVIL_LS012	chr12:57806539|57808194:-	AVIL	advillin	protein coding gene	no	.;.	1.891	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC011481.2_UP_LS0010	chr19:44909348|44961719:-	AC011481.2	-	lncRNA gene	no	.	1.200	0.043	0.000	0.019(181)	0.001(1)	0(0)	non tumor-specific	nAS	no
TRAPPC1_LS002	chr17:7931145|7931731:-	TRAPPC1	trafficking protein particle complex 1	protein coding gene	no	.;.	56.097	3.732	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CNTN5_LS015	chr11:100308468|100340463:+	CNTN5	contactin 5	protein coding gene	no	ENST00000528682.5;ENST00000524871.5;ENST00000418526.6;ENST00000279463.7;ENST00000619298.1;ENST00000524560.1	2.742	0.794	1.243	0.075(714)	0.101(71)	0.155(2693)	non tumor-specific	nAS	yes
UN_LIN7C_LS0008	chr11:27495365|27495409:+	LIN7C	lin-7 homolog C, crumbs cell polarity complex component	protein coding gene	no	.	3.199	0.324	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
FO538757.1_LS007	chr1:188266|188439:-	FO538757.1	-	pseudogene	no	ENST00000623083.4	22.093	11.399	7.050	0.966(9260)	0.937(658)	0.884(15359)	non tumor-specific	nAS	yes
TP53BP1_LS048	chr15:43492468|43493037:-	TP53BP1	tumor protein p53 binding protein 1	protein coding gene	yes	ENST00000382044.8;ENST00000382039.7;ENST00000450115.6;ENST00000572085.5;ENST00000413546.1	5.396	3.776	4.574	0.861(8248)	0.896(629)	0.919(15969)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_PTK2_LS0032	chr8:140735322|140744750:-	PTK2	protein tyrosine kinase 2	protein coding gene	no	.	1.208	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP1_LS0108	chr11:46678589|46678659:+	ARHGAP1	Rho GTPase activating protein 1	protein coding gene	no	.	3.334	0.569	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
DYNC1H1_LS084	chr14:102049582|102049714:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	ENST00000360184.9;ENST00000647366.1;ENST00000645039.1;ENST00000645149.1;ENST00000644881.1;ENST00000643437.1;ENST00000643829.1;ENST00000647204.1;ENST00000645085.1;ENST00000644239.1;ENST00000643591.1;ENST00000647143.1	565.194	279.545	279.426	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
SPATA2L_LS001	chr16:89696864|89698195:-	SPATA2L	spermatogenesis associated 2 like	protein coding gene	no	ENST00000335360.11	0.276	0.114	0.650	0.052(495)	0.038(27)	0.008(136)	non tumor-specific	intron_retention	yes
UN_ICE1_LS0001	chr5:5420840|5421403:-	ICE1	interactor of little elongation complex ELL subunit 1	protein coding gene	no	.	2.218	0.766	0.000	0.19(1825)	0.197(138)	0(0)	non tumor-specific	nAS	no
UN_RBPMS2_LS0003	chr15:64741242|64741383:-	RBPMS2	RNA binding protein, mRNA processing factor 2	protein coding gene	no	.	1.563	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CYB561A3_LS025	chr11:61353992|61361733:-	CYB561A3	cytochrome b561 family member A3	protein coding gene	no	ENST00000540317.5;ENST00000540317.5	0.037	0.051	0.927	0.187(1787)	0.107(75)	0.279(4848)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FTSJ1_LS026	chrX:48481715|48482420:+	FTSJ1	FtsJ RNA 2'-O-methyltransferase 1	protein coding gene	no	ENST00000475806.5	0.352	0.148	0.774	0.766(7342)	0.684(480)	0.376(6531)	non tumor-specific	alt_3prime;intron_retention	yes
UN_TNFAIP8L1_LS0004	chr19:4641000|4651867:+	TNFAIP8L1	TNF alpha induced protein 8 like 1	protein coding gene	no	.	1.302	1.223	0.000	0.063(606)	0.114(80)	0(0)	non tumor-specific	alt_5prime	no
UN_NOMO2_LS0827	chr16:18434767|18515967:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	57.309	13.960	0.000	0.006(55)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_CNDP2_LS0026	chr18:74512532|74513258:+	CNDP2	carnosine dipeptidase 2	protein coding gene	yes	.	4.840	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PHLDB2_LS0035	chr3:111881255|111884064:+	PHLDB2	pleckstrin homology like domain family B member 2	protein coding gene	no	.	0.862	0.056	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_FLJ34503_UP_LS0003	chr6:113856191|113857738:+	FLJ34503	long intergenic non-protein coding RNA 2880	lncRNA gene	no	.	1.599	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_INPP5A_LS0031	chr10:132681951|132690392:+	INPP5A	inositol polyphosphate-5-phosphatase A	protein coding gene	no	.	6.574	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF224_LS006	chr19:44100927|44101133:+	ZNF224	zinc finger protein 224	protein coding gene	no	ENST00000589680.5;ENST00000336976.10;ENST00000589870.5;ENST00000591511.1	10.800	6.068	18.183	0.953(9126)	0.979(687)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_SPIRE1_LS0001	chr18:12447636|12449428:+	SPIRE1	spire type actin nucleation factor 1	protein coding gene	no	.	1.757	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IFITM2_LS0029	chr11:308428|314263:-	IFITM2	interferon induced transmembrane protein 2	protein coding gene	no	.	7.935	1.717	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA2_LS0030	chr8:38957386|38969421:+	PLEKHA2	pleckstrin homology domain containing A2	protein coding gene	no	.	1.445	0.115	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SIGLEC11_LS0002	chr19:49959077|49959448:-	SIGLEC11	sialic acid binding Ig like lectin 11	protein coding gene	no	.	4.394	4.625	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UBXN4_LS012	chr2:135769823|135770571:+	UBXN4	UBX domain protein 4	protein coding gene	no	ENST00000272638.13;ENST00000490163.5	133.748	93.268	76.040	0.992(9503)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
BAGE2_LS002	chr21:10414911|10451427:+	BAGE2	BAGE family member 2	pseudogene	no	ENST00000474011.5	1.686	0.060	0.671	0.042(406)	0.003(2)	0.001(11)	non tumor-specific	nAS	yes
UN_MROH2A_LS0029	chr2:233824755|233828630:+	MROH2A	maestro heat like repeat family member 2A	protein coding gene	no	.	2.689	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
AP1G2_LS044	chr14:23566419|23567111:-	AP1G2	adaptor related protein complex 1 subunit gamma 2	protein coding gene	no	ENST00000460049.6;ENST00000465445.6;ENST00000556743.5;ENST00000556943.5;ENST00000555896.5;ENST00000557619.5;ENST00000553756.1;ENST00000460049.6;ENST00000465445.6;ENST00000556743.5;ENST00000556943.5;ENST00000555896.5;ENST00000557619.5;ENST00000553756.1;ENST00000460049.6;ENST00000465445.6;ENST00000556743.5;ENST00000556943.5;ENST00000555896.5;ENST00000557619.5;ENST00000553756.1	0.972	0.583	5.867	0.872(8353)	0.838(588)	0.944(16411)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GBA_LS014	chr1:155238650|155239616:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000368373.7;ENST00000327247.9;ENST00000428024.3;ENST00000493842.5;ENST00000473570.5	86.968	48.271	23.866	0.995(9530)	0.996(699)	0.978(17008)	non tumor-specific	exon_skip	yes
UN_AMZ1_LS0018	chr7:2722138|2723465:-	AMZ1	archaelysin family metallopeptidase 1	protein coding gene	no	.	1.142	0.036	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
TRBV5-7_LS001	chr7:142520138|142520263:+	TRBV5-7	T cell receptor beta variable 5-7 (non-functional)	no	no	ENST00000390378.1	0.241	0.040	0.718	0.017(165)	0.014(10)	0.004(69)	non tumor-specific	nAS	yes
UN_RF00002_UP_LS0049	chr20:30612223|30613676:-	RF00002	-	small non-coding RNA gene	no	.	3.049	0.480	0.000	0.015(147)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SLC25A3_LS0023	chr12:98601411|98601442:-	SLC25A3	solute carrier family 25 member 3	protein coding gene	no	.	4.140	0.000	0.000	0.008(72)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EDARADD_LS0015	chr1:236427450|236482267:+	EDARADD	EDAR associated death domain	protein coding gene	no	.	3.358	0.217	0.000	0.008(80)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
APAF1_LS021	chr12:98703499|98706485:+	APAF1	apoptotic peptidase activating factor 1	protein coding gene	yes	ENST00000551964.5;ENST00000550527.5;ENST00000546491.1	7.513	4.004	3.761	0.873(8360)	0.922(647)	0.924(16058)	non tumor-specific	exon_skip	yes
CADPS2_LS003	chr7:122345681|122360788:-	CADPS2	calcium dependent secretion activator 2	protein coding gene	no	ENST00000313070.11;ENST00000334010.11;ENST00000615869.4;ENST00000462699.5;ENST00000412584.6;ENST00000449022.6;ENST00000397721.4	35.290	35.888	20.495	0.93(8912)	0.983(690)	0.939(16320)	non tumor-specific	exon_skip	yes
UN_ACSM2A_LS0011	chr16:20475441|20475672:+	ACSM2A	acyl-CoA synthetase medium chain family member 2A	protein coding gene	no	.	9.924	43.289	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
PPP2R2D_LS046	chr10:131958447|131958707:+	PPP2R2D	protein phosphatase 2 regulatory subunit Bdelta	protein coding gene	no	.;.	0.971	0.103	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LOXL3_LS0020	chr2:74549172|74555156:+	LOXL3	lysyl oxidase like 3	protein coding gene	no	.	1.676	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
KAT6A_LS015	chr8:41974822|41977008:-	KAT6A	lysine acetyltransferase 6A	protein coding gene	yes	ENST00000406337.6;ENST00000265713.7;ENST00000396930.4;ENST00000648335.1;ENST00000649827.1;ENST00000485568.5;ENST00000647809.1;ENST00000647746.1;ENST00000648030.1;ENST00000650356.1;ENST00000470574.2;ENST00000463961.1	14.631	11.555	11.495	0.914(8753)	0.96(674)	0.967(16811)	non tumor-specific	nAS	yes
UN_VSIG10_LS0020	chr12:118071064|118071359:-	VSIG10	V-set and immunoglobulin domain containing 10	protein coding gene	no	.	3.022	1.527	0.000	0.06(578)	0.068(48)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_BX248415.1_UP_LS0027	chr1:196745978|196830604:+	BX248415.1	-	pseudogene	no	.	48.697	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
CA12_LS001	chr15:63323717|63326197:-	CA12	carbonic anhydrase 12	protein coding gene	no	.;.	10.185	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RPL23AP7_LS0021	chr2:113626277|113626478:-	RPL23AP7	ribosomal protein L23a pseudogene 7	pseudogene	no	.	1.026	0.046	0.000	0.004(34)	0.007(5)	0(0)	non tumor-specific	nAS	no
RAF1_LS019	chr3:12603537|12604136:-	RAF1	ribonuclease A family member 3	protein coding gene	yes	ENST00000442415.6	0.144	0.493	1.090	0.029(279)	0.017(12)	0.306(5316)	non tumor-specific	exon_skip;intron_retention	yes
UN_TNFSF10_LS0001	chr3:172505814|172505841:-	TNFSF10	TNF superfamily member 10	protein coding gene	no	.	132.231	32.780	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MT-ND5_LS0128	chrM:13653|13683:-	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	protein coding gene	no	.	53.075	0.654	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_OTUD5_LS0039	chrX:48944283|48954648:-	OTUD5	OTU deubiquitinase 5	protein coding gene	no	.	2.153	1.379	0.000	0.085(812)	0.152(107)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
COL9A2_LS001	chr1:40301381|40301812:-	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	ENST00000372748.7;ENST00000482722.5	33.999	20.079	15.617	0.889(8515)	0.875(614)	0.938(16309)	non tumor-specific	nAS	yes
UN_WDR6_LS0067	chr3:49013683|49013734:-	WDR6	WD repeat domain 6	protein coding gene	no	.	1.742	0.484	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL121970.1_UP_LS0034	chr6:134804113|134805738:-	AL121970.1	-	lncRNA gene	no	.	2.680	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00624_LS0014	chr1:147507751|147514338:-	LINC00624	long intergenic non-protein coding RNA 624	lncRNA gene	no	.	3.483	0.291	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COL1A1_LS0658	chr17:50189517|50194745:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	52.888	0.166	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SIRT2_LS0005	chr19:38878724|38878760:+	SIRT2	sirtuin 2	protein coding gene	yes	.	10.127	0.077	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
SNX4_LS013	chr3:125497388|125497834:-	SNX4	sorting nexin 4	protein coding gene	no	ENST00000251775.8;ENST00000471751.5;ENST00000473417.5;ENST00000465505.2	58.281	50.747	22.273	0.985(9438)	0.997(700)	0.978(16996)	non tumor-specific	nAS	yes
UN_CBWD6_UP_LS0002	chr9:41229729|41229774:-	CBWD6	COBW domain containing 6	protein coding gene	no	.	6.850	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KRT8P4_UP_LS0043	chr8:89596512|89611434:-	KRT8P4	keratin 8 pseudogene 4	pseudogene	no	.	1.584	0.176	0.000	0.021(204)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_CWC22_UP_LS0002	chr2:180117576|180119167:-	CWC22	CWC22 spliceosome associated protein homolog	protein coding gene	no	.	19.346	2.744	0.000	0.021(204)	0.017(12)	0(0)	non tumor-specific	nAS	no
AKR1E2_LS004	chr10:4826277|4830675:+	AKR1E2	aldo-keto reductase family 1 member E2	protein coding gene	no	ENST00000474119.5	0.060	0.008	0.641	0.122(1172)	0.104(73)	0.02(343)	non tumor-specific	alt_5prime	yes
UN_FAM131C_LS0008	chr1:16063636|16064024:-	FAM131C	family with sequence similarity 131 member C	protein coding gene	no	.	3.413	1.440	0.000	0.005(50)	0.046(32)	0(0)	non tumor-specific	nAS	no
NBPF6_LS002	chr1:108450779|108452190:+	NBPF6	NBPF member 6	protein coding gene	no	ENST00000370040.7;ENST00000495380.6;ENST00000531446.2	0.523	0.024	0.678	0.07(674)	0.026(18)	0.002(39)	non tumor-specific	nAS	yes
PRKAB2_LS012	chr1:147162573|147166846:-	PRKAB2	protein kinase AMP-activated non-catalytic subunit beta 2	protein coding gene	no	.;.	1.469	0.384	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PARVA_LS020	chr11:12518517|12527849:+	PARVA	parvin alpha	protein coding gene	no	ENST00000334956.13;ENST00000649199.1	71.112	73.298	79.433	0.922(8831)	0.922(647)	0.954(16574)	non tumor-specific	exon_skip	yes
ATP11B_LS027	chr3:182886010|182887586:+	ATP11B	ATPase phospholipid transporting 11B (putative)	protein coding gene	no	ENST00000323116.9;ENST00000498086.5;ENST00000490303.5;ENST00000466758.5	31.324	19.481	12.036	0.957(9166)	0.991(696)	0.965(16766)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CYP21A2_UP_LS0150	chr6:31998869|32031575:+	CYP21A2	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	.	34.416	27.969	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
TNS1_LS047	chr2:217900512|217903603:-	TNS1	tensin 1	protein coding gene	no	ENST00000310858.10	0.114	0.017	0.697	0.075(723)	0.194(136)	0.108(1878)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HMGB1P38_UP_LS0024	chr3:80633971|80761438:-	HMGB1P38	high mobility group box 1 pseudogene 38	pseudogene	no	.	3.900	0.744	0.000	0.032(307)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TTC23_LS0021	chr15:99148709|99150018:-	TTC23	tetratricopeptide repeat domain 23	protein coding gene	no	.	1.847	0.203	0.000	0.006(55)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
NCDN_LS006	chr1:35557883|35559107:+	NCDN	neurochondrin	protein coding gene	no	ENST00000373253.7;ENST00000373253.7;ENST00000373253.7	0.126	2.494	11.234	0.694(6651)	0.717(503)	0.265(4604)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TRMT2B_LS0013	chrX:101021315|101023470:-	TRMT2B	tRNA methyltransferase 2 homolog B	protein coding gene	no	.	0.621	0.000	0.000	0.012(112)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
RDX_LS018	chr11:110247833|110279681:-	RDX	radixin	protein coding gene	no	ENST00000528900.5	0.217	0.060	0.642	0.012(118)	0.007(5)	0.003(46)	non tumor-specific	nAS	yes
KCNQ4_LS005	chr1:40818990|40819347:+	KCNQ4	potassium voltage-gated channel subfamily Q member 4	protein coding gene	no	ENST00000506017.1	0.067	0.030	0.667	0.073(701)	0.125(88)	0.015(265)	non tumor-specific	nAS	yes
UN_MAPK3_LS0048	chr16:30115378|30115595:-	MAPK3	mitogen-activated protein kinase 3	protein coding gene	no	.	2.243	0.395	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_NUMA1_LS0266	chr11:72017840|72018895:+	NUMA1	nuclear mitotic apparatus protein 1	protein coding gene	no	.	0.676	0.236	0.000	0.028(264)	0.034(24)	0(0)	non tumor-specific	nAS	no
ACACB_LS052	chr12:109256236|109258268:+	ACACB	acetyl-CoA carboxylase beta	protein coding gene	no	ENST00000338432.11;ENST00000377854.9;ENST00000377848.7;ENST00000538526.5	12.646	21.444	33.340	0.784(7509)	0.974(684)	0.97(16854)	non tumor-specific	exon_skip	yes
LARP1_LS030	chr5:154806032|154808459:+	LARP1	La ribonucleoprotein 1, translational regulator	protein coding gene	no	ENST00000336314.8;ENST00000519194.1	75.415	42.028	61.224	0.99(9484)	0.993(697)	0.979(17016)	non tumor-specific	exon_skip	yes
MDN1_LS057	chr6:89706192|89707361:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	ENST00000369393.7;ENST00000629399.2	6.231	4.036	4.661	0.663(6351)	0.821(576)	0.912(15857)	non tumor-specific	nAS	yes
UN_JPT1_LS0031	chr17:75136259|75146666:-	JPT1	Jupiter microtubule associated homolog 1	protein coding gene	no	.	25.157	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RIN2_LS0095	chr20:19970929|19974646:+	RIN2	Ras and Rab interactor 2	protein coding gene	no	.	2.851	0.319	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RDM1P5_LS001	chr17:39057159|39061097:+	RDM1P5	RDM1 pseudogene 5	pseudogene	no	ENST00000578423.1	1.917	0.264	0.773	0.046(438)	0.009(6)	0.255(4426)	non tumor-specific	nAS	yes
UN_DHX8_LS0030	chr17:43524161|43536412:+	DHX8	DEAH-box helicase 8	protein coding gene	no	.	0.798	0.132	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PIGG_LS010	chr4:500601|501741:+	PIGG	phosphatidylinositol glycan anchor biosynthesis class G	protein coding gene	no	.;.	2.047	0.103	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPL41_LS0011	chr12:56116867|56117198:+	RPL41	ribosomal protein L41	protein coding gene	no	.	11.822	6.152	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MEGF10_LS0009	chr5:127409998|127410389:+	MEGF10	multiple EGF like domains 10	protein coding gene	no	.	1.902	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_CD300LF_LS0006	chr17:74703155|74704478:-	CD300LF	CD300 molecule like family member f	protein coding gene	no	.	6.515	0.065	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
SNED1_LS024	chr2:241052468|241053153:+	SNED1	sushi, nidogen and EGF like domains 1	protein coding gene	no	ENST00000401884.5;ENST00000405547.7;ENST00000310397.12;ENST00000469006.1	4.547	4.805	11.691	0.628(6016)	0.9(632)	0.941(16360)	non tumor-specific	alt_5prime	yes
GTF3C2_LS002	chr2:27326723|27327177:-	GTF3C2	general transcription factor IIIC subunit 2	protein coding gene	no	ENST00000431028.5	0.453	0.223	2.599	0.895(8574)	0.873(613)	0.899(15628)	non tumor-specific	alt_3prime	yes
UN_LMAN1_LS0028	chr18:59353301|59353732:-	LMAN1	lectin, mannose binding 1	protein coding gene	no	.	1.356	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AP001636.3_LS0004	chr11:58999689|59044020:-	AP001636.3	-	lncRNA gene	no	.	2.084	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
GREB1L_LS034	chr18:21508591|21513821:+	GREB1L	GREB1 like retinoic acid receptor coactivator	protein coding gene	no	ENST00000424526.5;ENST00000269218.10;ENST00000580732.6	3.279	0.866	1.190	0.157(1505)	0.184(129)	0.379(6592)	non tumor-specific	alt_5prime	yes
AC027130.1_LS003	chr16:19762036|19765969:-	AC027130.1	-	lncRNA gene	no	ENST00000568843.1	7.307	0.694	0.989	0.02(188)	0.001(1)	0.003(52)	non tumor-specific	nAS	yes
UN_SOCS7_LS0011	chr17:38373989|38377714:+	SOCS7	suppressor of cytokine signaling 7	protein coding gene	no	.	1.308	0.315	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_BCAR1_LS0002	chr16:75229223|75229247:+	BCAR1	BCAR1 scaffold protein, Cas family member	protein coding gene	no	.	3.144	0.135	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WDR20_LS0021	chr14:102197847|102208862:+	WDR20	WD repeat domain 20	protein coding gene	no	.	1.043	0.311	0.000	0.011(103)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RBL1_LS008	chr20:37035508|37040153:-	RBL1	RB transcriptional corepressor like 1	protein coding gene	yes	ENST00000373664.7;ENST00000344359.7	9.905	2.680	3.269	0.831(7961)	0.83(583)	0.91(15813)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LEXM_LS0001	chr1:54807083|54807536:+	LEXM	lymphocyte expansion molecule	protein coding gene	no	.	1.362	0.744	0.000	0.001(13)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_AC058822.1_LS0013	chr4:53399839|53414621:+	AC058822.1	-	protein coding gene	no	.	8.532	0.274	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SSH1_LS0045	chr12:108812460|108814366:+	SSH1	slingshot protein phosphatase 1	protein coding gene	no	.	3.548	0.310	0.000	0.016(152)	0.006(4)	0(0)	non tumor-specific	nAS	no
CCDC65_LS009	chr12:48918903|48920930:+	CCDC65	coiled-coil domain containing 65	protein coding gene	no	ENST00000266984.9;ENST00000552942.5;ENST00000547861.5;ENST00000320516.4;ENST00000552188.1	2.412	2.465	1.614	0.476(4559)	0.647(454)	0.545(9471)	non tumor-specific	alt_5prime;exon_skip	yes
MYO15B_LS122	chr17:75624269|75624543:+	MYO15B	myosin XVB	protein coding gene	no	ENST00000621743.4;ENST00000610510.4;ENST00000642007.1;ENST00000621743.4;ENST00000610510.4;ENST00000642007.1	0.063	0.807	0.721	0(3)	0.001(1)	0.098(1711)	non tumor-specific	alt_5prime;exon_skip	yes
IL6ST_LS019	chr5:55959671|55960402:-	IL6ST	interleukin 6 signal transducer	protein coding gene	no	ENST00000503773.6	0.158	0.917	1.359	0.231(2217)	0.459(322)	0.497(8640)	non tumor-specific	exon_skip	yes
HDLBP_LS074	chr2:241268541|241315102:-	HDLBP	high density lipoprotein binding protein	protein coding gene	no	ENST00000391976.6;ENST00000391976.6	7.287	7.049	18.033	0.55(5274)	0.691(485)	0.976(16967)	non tumor-specific	alt_3prime;exon_skip	yes
INF2_LS032	chr14:104716017|104718795:+	INF2	inverted formin 2	protein coding gene	no	ENST00000481338.1	0.248	0.307	1.193	0.82(7853)	0.795(558)	0.53(9216)	non tumor-specific	exon_skip;mutex_exons	yes
DNAH8_LS095	chr6:39026667|39030105:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000359357.7	7.817	0.794	0.985	0.035(331)	0.017(12)	0.115(2006)	non tumor-specific	nAS	yes
MYO7A_LS022	chr11:77179129|77179735:+	MYO7A	myosin VIIA	protein coding gene	no	ENST00000409709.8;ENST00000620575.4;ENST00000458637.6;ENST00000409619.6;ENST00000409893.6	2.924	2.466	2.173	0.306(2928)	0.309(217)	0.738(12835)	non tumor-specific	exon_skip	yes
UN_NUTM2B-AS1_LS0024	chr10:79724036|79766271:-	NUTM2B-AS1	NUTM2B antisense RNA 1	lncRNA gene	no	.	2.825	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PAG1_LS0025	chr8:81030089|81065260:-	PAG1	phosphoprotein membrane anchor with glycosphingolipid microdomains 1	protein coding gene	no	.	2.233	0.156	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	nAS	no
STARD3_LS009	chr17:39651845|39653481:+	STARD3	StAR related lipid transfer domain containing 3	protein coding gene	no	ENST00000581894.5;ENST00000579479.5	0.049	0.031	0.897	0.388(3716)	0.395(277)	0.481(8368)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ARMC10_LS0021	chr7:103093540|103097277:+	ARMC10	armadillo repeat containing 10	protein coding gene	yes	.	1.918	0.509	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
CAND2_LS009	chr3:12810324|12812990:+	CAND2	cullin associated and neddylation dissociated 2 (putative)	protein coding gene	no	ENST00000295989.9;ENST00000446928.5;ENST00000456430.6;ENST00000650119.1	2.576	2.074	4.855	0.476(4562)	0.741(520)	0.854(14841)	non tumor-specific	nAS	yes
UN_GTF2IP1_LS0016	chr7:75201304|75207956:-	GTF2IP1	general transcription factor IIi pseudogene 1	pseudogene	no	.	30.919	0.129	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PARP16_LS005	chr15:65261026|65263149:-	PARP16	poly(ADP-ribose) polymerase family member 16	protein coding gene	no	ENST00000261888.10;ENST00000444347.2;ENST00000649807.1;ENST00000560149.5	12.074	8.337	13.945	0.958(9177)	0.987(693)	0.976(16973)	non tumor-specific	exon_skip	yes
UN_APOE_LS0083	chr19:44908692|44908825:-	APOE	apolipoprotein E	protein coding gene	no	.	40.615	3.817	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCL_LS0012	chr2:231455127|231455535:+	NCL	nucleolin	protein coding gene	no	.	4.851	0.451	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
C11orf24_LS009	chr11:68267397|68268054:-	C11orf24	chromosome 11 open reading frame 24	protein coding gene	no	ENST00000529590.5;ENST00000532534.5	3.442	1.886	1.841	0.598(5726)	0.566(397)	0.451(7844)	non tumor-specific	alt_3prime	yes
PALM_LS001	chr19:709151|726138:+	PALM	paralemmin	protein coding gene	no	ENST00000264560.11;ENST00000592870.5;ENST00000338448.9;ENST00000589012.5	2.718	1.958	20.429	0.795(7616)	0.9(632)	0.922(16034)	non tumor-specific	nAS	yes
UN_DLEU2_LS0011	chr13:49991366|49997074:-	DLEU2	deleted in lymphocytic leukemia 2	lncRNA gene	yes	.	1.906	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
CTNNA2_LS034	chr2:80545074|80545907:+	CTNNA2	catenin alpha 2	protein coding gene	yes	ENST00000466387.5;ENST00000496558.5;ENST00000629316.2;ENST00000402739.8;ENST00000541047.5;ENST00000493024.5;ENST00000343114.7;ENST00000361291.8;ENST00000540488.5;ENST00000409550.2;ENST00000465616.1	14.610	4.546	3.701	0.195(1868)	0.067(47)	0.374(6500)	non tumor-specific	nAS	yes
AK7_LS019	chr14:96487056|96488305:+	AK7	adenylate kinase 7	protein coding gene	no	ENST00000267584.8	3.530	2.805	1.863	0.341(3267)	0.662(465)	0.602(10470)	non tumor-specific	exon_skip	yes
UN_WWTR1_LS0011	chr3:149520986|149526013:-	WWTR1	WW domain containing transcription regulator 1	protein coding gene	yes	.	18.150	2.243	0.000	0.009(90)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_AC244157.2_UP_LS0244	chr22:22895630|22901147:-	AC244157.2	-	pseudogene	no	.	106.398	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
FCHSD2_LS020	chr11:72921950|72984088:-	FCHSD2	FCH and double SH3 domains 2	protein coding gene	no	ENST00000311172.11;ENST00000409314.5;ENST00000409418.8;ENST00000458644.6;ENST00000409853.5	28.768	16.996	17.337	0.936(8965)	0.984(691)	0.977(16985)	non tumor-specific	nAS	yes
PUS7L_LS008	chr12:43748609|43755217:-	PUS7L	pseudouridine synthase 7 like	protein coding gene	no	ENST00000547156.1	0.164	0.099	0.700	0.358(3430)	0.349(245)	0.13(2263)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
GALP_LS003	chr19:56177195|56182172:+	GALP	galanin like peptide	protein coding gene	no	ENST00000440823.1;ENST00000590002.1	0.961	0.066	0.912	0.044(421)	0.037(26)	0.021(360)	non tumor-specific	exon_skip	yes
UN_AL360007.1_UP_LS0001	chr6:142263250|142263960:-	AL360007.1	-	lncRNA gene	no	.	1.775	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STK24_LS0079	chr13:98519473|98567872:-	STK24	serine/threonine kinase 24	protein coding gene	no	.	1.393	0.090	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LIMS1_LS0020	chr2:108595729|108601275:-	LIMS1	LIM zinc finger domain containing 1	protein coding gene	no	.	3.582	1.228	0.000	0.018(174)	0.097(68)	0(0)	non tumor-specific	nAS	no
UNC79_LS014	chr14:93529326|93532550:+	UNC79	unc-79 homolog, NALCN channel complex subunit	protein coding gene	no	ENST00000256339.8;ENST00000555664.5;ENST00000553484.5;ENST00000393151.6;ENST00000621021.1	4.480	0.290	1.919	0.057(546)	0.007(5)	0.193(3349)	non tumor-specific	exon_skip	yes
TAC4_LS015	chr17:49844157|49847895:-	TAC4	tachykinin precursor 4	protein coding gene	no	ENST00000334568.8;ENST00000608861.1	0.053	0.005	0.778	0.052(497)	0.026(18)	0.019(323)	non tumor-specific	alt_5prime	yes
UN_SPPL2B_LS0093	chr19:2353192|2353264:-	SPPL2B	signal peptide peptidase like 2B	protein coding gene	no	.	2.546	0.107	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP000769.1_LS0006	chr11:65456460|65456638:+	AP000769.1	-	pseudogene	no	.	2.512	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
LINC01673_LS001	chr21:27638923|27648665:+	LINC01673	long intergenic non-protein coding RNA 1673	lncRNA gene	no	ENST00000426418.1	0.717	0.000	0.814	0(4)	0(0)	0.001(23)	non tumor-specific	nAS	yes
UN_DEPTOR_LS0029	chr8:119989114|120001525:+	DEPTOR	DEP domain containing MTOR interacting protein	protein coding gene	no	.	0.440	0.015	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
INTS6_LS002	chr13:51365845|51367805:-	INTS6	integrator complex subunit 6	protein coding gene	yes	ENST00000476666.5;ENST00000398119.6;ENST00000469430.5;ENST00000311234.8;ENST00000497989.5;ENST00000483441.5;ENST00000490542.5	29.929	18.032	24.536	0.979(9378)	0.983(690)	0.979(17018)	non tumor-specific	nAS	yes
CX3CR1_LS002	chr3:39266518|39280249:-	CX3CR1	C-X3-C motif chemokine receptor 1	protein coding gene	no	ENST00000542107.5;ENST00000435290.1	0.054	0.010	0.800	0.116(1108)	0.154(108)	0.024(409)	non tumor-specific	nAS	yes
UN_AC007326.4_LS0001	chr22:18906484|18906578:+	AC007326.4	-	protein coding gene	no	.	10.491	0.496	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AAK1_LS0052	chr2:69509463|69514471:-	AAK1	AP2 associated kinase 1	protein coding gene	no	.	3.176	2.345	0.000	0.287(2745)	0.356(250)	0(0)	non tumor-specific	alt_3prime	no
DNAJB11_LS008	chr3:186577800|186581371:+	DNAJB11	DnaJ heat shock protein family (Hsp40) member B11	protein coding gene	no	ENST00000439351.5;ENST00000265028.7;ENST00000439351.5;ENST00000265028.7;ENST00000439351.5;ENST00000265028.7	184.889	81.298	48.997	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC006453.1_UP_LS0320	chr2:90173358|90221329:-	AC006453.1	-	pseudogene	no	.	43.342	13.710	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MTND3P4_UP_LS0002	chr9:101822647|101823002:-	MTND3P4	MT-ND3 pseudogene 4	pseudogene	no	.	2.846	0.578	0.000	0.006(60)	0.017(12)	0(0)	non tumor-specific	nAS	no
MTHFR_LS025	chr1:11803129|11803799:-	MTHFR	methylenetetrahydrofolate reductase	protein coding gene	no	ENST00000431243.6	0.044	0.000	0.635	0.003(26)	0.006(4)	0.003(47)	non tumor-specific	alt_5prime;intron_retention	yes
UN_ALKBH4_LS0016	chr7:102459792|102464430:+	ALKBH4	alkB homolog 4, lysine demethylase	protein coding gene	no	.	1.599	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DOCK3_LS017	chr3:51228088|51228661:+	DOCK3	dedicator of cytokinesis 3	protein coding gene	no	ENST00000266037.9	4.583	2.649	2.447	0.17(1627)	0.164(115)	0.622(10805)	non tumor-specific	nAS	yes
UN_STAG3L5P_LS0018	chr7:100340891|100345865:+	STAG3L5P	stromal antigen 3-like 5 pseudogene	pseudogene	no	.	0.982	0.242	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
GOLGA8G_LS010	chr15:28526511|28526902:-	GOLGA8G	golgin A8 family member G	protein coding gene	no	ENST00000382949.7;ENST00000562627.5;ENST00000524859.5;ENST00000569308.5;ENST00000525590.2	1.117	0.000	0.635	0.001(12)	0(0)	0.002(39)	non tumor-specific	nAS	yes
UN_PNPLA7_LS0015	chr9:137464504|137467317:-	PNPLA7	patatin like phospholipase domain containing 7	protein coding gene	no	.	2.910	2.282	0.000	0.003(26)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_ADAR_LS0089	chr1:154583995|154584201:+	ADAR	adenosine deaminase RNA specific	protein coding gene	no	.	1.899	0.146	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CEP290_LS0034	chr12:88114620|88115098:-	CEP290	centrosomal protein 290	protein coding gene	no	.	1.656	0.317	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_OGFOD2_UP_LS0002	chr12:122865163|122865359:+	OGFOD2	2-oxoglutarate and iron dependent oxygenase domain containing 2	protein coding gene	no	.	2.279	0.690	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
NUP107_LS026	chr12:68721177|68721841:+	NUP107	nucleoporin 107	protein coding gene	no	ENST00000229179.8;ENST00000378905.6;ENST00000535718.5;ENST00000539906.5;ENST00000538993.1	45.394	17.887	22.010	0.983(9420)	0.991(696)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_IL2RA_LS0006	chr10:6026068|6026952:+	IL2RA	interleukin 2 receptor subunit alpha	protein coding gene	no	.	5.852	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
KYAT1_LS029	chr9:128845411|128881903:-	KYAT1	kynurenine aminotransferase 1	protein coding gene	no	.;.	1.025	0.374	0.000	0.053(511)	0.04(28)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRPF40B_LS023	chr12:49634092|49634332:+	PRPF40B	pre-mRNA processing factor 40 homolog B	protein coding gene	no	ENST00000548825.6;ENST00000548436.5;ENST00000261897.5;ENST00000380281.5	20.981	13.087	28.594	0.938(8990)	0.952(668)	0.967(16812)	non tumor-specific	exon_skip	yes
UN_SHH_LS0009	chr7:155807422|155808993:-	SHH	sonic hedgehog signaling molecule	protein coding gene	no	.	1.892	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MALT1_LS0006	chr18:58677646|58680472:-	MALT1	MALT1 paracaspase	protein coding gene	yes	.	2.194	0.775	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RFTN1_LS0040	chr3:16444865|16446355:+	RFTN1	raftlin, lipid raft linker 1	protein coding gene	no	.	4.165	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
PKHD1_LS050	chr6:52054165|52055587:-	PKHD1	PKHD1 ciliary IPT domain containing fibrocystin/polyductin	protein coding gene	no	ENST00000371117.7;ENST00000340994.4	3.890	2.822	1.230	0.083(794)	0.195(137)	0.037(651)	non tumor-specific	alt_3prime	yes
HDHD5_LS025	chr22:17149849|17159126:-	HDHD5	haloacid dehalogenase like hydrolase domain containing 5	protein coding gene	no	.;.	3.950	0.241	0.000	0(4)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
SLC26A9_LS022	chr1:205932035|205932945:-	SLC26A9	solute carrier family 26 member 9	protein coding gene	no	.;.;.	2.002	0.793	0.000	0.005(44)	0.016(11)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FENDRR_LS0003	chr16:86477199|86478701:-	FENDRR	FOXF1 adjacent non-coding developmental regulatory RNA	lncRNA gene	no	.	2.366	3.235	0.000	0.05(477)	0.134(94)	0(0)	non tumor-specific	nAS	no
MYEOV_LS002	chr11:69294576|69295327:+	MYEOV	myeloma overexpressed	protein coding gene	no	ENST00000308946.3	0.754	0.617	1.994	0.323(3095)	0.278(195)	0.24(4174)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
BRWD1_LS042	chr21:39277351|39278743:-	BRWD1	bromodomain and WD repeat domain containing 1	protein coding gene	no	ENST00000333229.6;ENST00000342449.7;ENST00000380800.7;ENST00000445668.5;ENST00000430093.5;ENST00000445245.5;ENST00000455867.5;ENST00000412604.1	2.715	1.904	3.510	0.633(6065)	0.805(565)	0.877(15246)	non tumor-specific	exon_skip	yes
UN_PMS2CL_LS0021	chr7:6735389|6741685:+	PMS2CL	PMS2 C-terminal like pseudogene	pseudogene	no	.	1.871	0.125	0.000	0.026(249)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ANGPT1_LS0006	chr8:107347097|107419536:-	ANGPT1	angiopoietin 1	protein coding gene	no	.	3.897	0.175	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LY75-CD302_LS0014	chr2:159808571|159815405:-	LY75-CD302	LY75-CD302 readthrough	protein coding gene	no	.	2.530	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LIMCH1_LS041	chr4:41661510|41662821:+	LIMCH1	LIM and calponin homology domains 1	protein coding gene	no	ENST00000513024.5;ENST00000508501.5;ENST00000512946.5;ENST00000313860.11;ENST00000512632.5;ENST00000512820.5;ENST00000503057.5;ENST00000511496.5;ENST00000514096.5;ENST00000509277.5;ENST00000396595.7;ENST00000381753.8;ENST00000508466.1	30.711	42.286	30.641	0.856(8202)	0.973(683)	0.934(16234)	non tumor-specific	alt_3prime	yes
PDGFRA_LS029	chr4:54287541|54288799:+	PDGFRA	platelet derived growth factor receptor alpha	protein coding gene	yes	ENST00000257290.9	18.925	21.777	27.451	0.749(7176)	0.97(681)	0.931(16183)	non tumor-specific	nAS	yes
TNR_LS002	chr1:175323476|175324356:-	TNR	tenascin R	protein coding gene	no	ENST00000367674.6;ENST00000263525.6	18.864	3.833	10.374	0.093(892)	0.073(51)	0.216(3751)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF655_LS017	chr7:99561973|99562344:+	ZNF655	zinc finger protein 655	protein coding gene	no	ENST00000423973.5	0.118	0.109	0.839	0.254(2429)	0.271(190)	0.379(6592)	non tumor-specific	alt_3prime;intron_retention	yes
UN_VWCE_LS0018	chr11:61269014|61271557:-	VWCE	von Willebrand factor C and EGF domains	protein coding gene	no	.	2.447	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
HEATR9_LS004	chr17:35856357|35856732:-	HEATR9	HEAT repeat containing 9	protein coding gene	no	ENST00000605080.5;ENST00000603852.5	7.219	0.000	0.687	0(1)	0(0)	0.007(128)	non tumor-specific	nAS	yes
GABRP_LS016	chr5:170805853|170809568:+	GABRP	gamma-aminobutyric acid type A receptor subunit pi	protein coding gene	no	.;.	12.740	3.439	0.000	0.023(217)	0.041(29)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DISC1-IT1_LS003	chr1:231943959|231944923:+	DISC1-IT1	DISC1 intronic transcript 1	lncRNA gene	no	ENST00000456782.1	0.930	0.000	0.689	0(1)	0(0)	0.001(10)	non tumor-specific	nAS	yes
CHD5_LS033	chr1:6136638|6136728:-	CHD5	guided entry of tail-anchored proteins factor 1	protein coding gene	yes	ENST00000262450.7;ENST00000462991.5;ENST00000496404.1	4.162	3.508	2.027	0.072(689)	0.047(33)	0.456(7931)	non tumor-specific	nAS	yes
WDR27_LS062	chr6:169689308|169701551:-	WDR27	WD repeat domain 27	protein coding gene	no	ENST00000648472.1;ENST00000647790.1;ENST00000647873.1;ENST00000649303.1;ENST00000647889.1;ENST00000650296.1;ENST00000474018.1	1.759	0.780	4.373	0.768(7360)	0.792(556)	0.917(15931)	non tumor-specific	alt_5prime;exon_skip	yes
LAS1L_LS023	chrX:65525050|65528260:-	LAS1L	LAS1 like ribosome biogenesis factor	protein coding gene	no	ENST00000374807.9;ENST00000374811.7;ENST00000374804.9	68.372	31.159	38.330	0.994(9525)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PNPLA7_LS0039	chr9:137484736|137485140:-	PNPLA7	patatin like phospholipase domain containing 7	protein coding gene	no	.	0.758	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PNPLA8_LS0011	chr7:108485762|108487759:-	PNPLA8	patatin like phospholipase domain containing 8	protein coding gene	no	.	3.900	2.489	0.000	0.015(146)	0.03(21)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_TMEM131L_LS0023	chr4:153585611|153586246:+	TMEM131L	transmembrane 131 like	protein coding gene	no	.	1.848	0.164	0.000	0.009(84)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
UN_AC068946.2_LS0063	chr2:219220524|219220747:-	AC068946.2	-	protein coding gene	no	.	17.355	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_LINC00630_LS0059	chrX:102878119|102884143:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	.	1.186	0.146	0.000	0.019(186)	0.007(5)	0(0)	non tumor-specific	nAS	no
AP006259.1_LS001	chr11:9242829|9245331:-	AP006259.1	-	lncRNA gene	no	ENST00000528520.1	0.050	0.022	0.630	0.116(1110)	0.107(75)	0.003(44)	non tumor-specific	nAS	yes
DNAJC6_LS004	chr1:65264932|65364635:+	DNAJC6	DnaJ heat shock protein family (Hsp40) member C6	protein coding gene	no	ENST00000395325.7	0.104	0.475	1.247	0.135(1292)	0.168(118)	0.315(5473)	non tumor-specific	exon_skip	yes
XAGE3_LS003	chrX:52866538|52867053:-	XAGE3	X antigen family member 3	protein coding gene	no	ENST00000375491.7;ENST00000346279.3	5.532	0.367	0.792	0.025(244)	0.036(25)	0.08(1390)	non tumor-specific	nAS	yes
AK8_LS005	chr9:132823336|132826854:-	AK8	adenylate kinase 8	protein coding gene	no	ENST00000298545.3;ENST00000477396.5;ENST00000476719.1	6.552	4.250	2.979	0.674(6461)	0.756(531)	0.806(14002)	non tumor-specific	nAS	yes
UN_DKC1_LS0005	chrX:154776223|154776897:-	DKC1	dyskerin pseudouridine synthase 1	protein coding gene	no	.	0.634	0.435	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
C1orf112_LS023	chr1:169827840|169829263:+	C1orf112	chromosome 1 open reading frame 112	protein coding gene	no	ENST00000498289.5;ENST00000359326.8;ENST00000459772.5;ENST00000286031.10;ENST00000413811.3	10.757	2.469	3.499	0.881(8442)	0.742(521)	0.918(15948)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_EGR1_LS0189	chr5:138467595|138467841:-	EGR1	early growth response 1	protein coding gene	yes	.	10.068	14.184	0.000	0.005(52)	0.007(5)	0(0)	non tumor-specific	nAS	no
AUTS2_LS008	chr7:70317046|70435752:+	AUTS2	activator of transcription and developmental regulator AUTS2	protein coding gene	no	ENST00000475660.2	0.049	0.002	0.669	0.017(164)	0.004(3)	0.014(251)	non tumor-specific	nAS	yes
AC103993.1_LS001	chr8:113600438|113615504:+	AC103993.1	-	lncRNA gene	no	ENST00000521500.2	0.080	0.000	0.897	0.005(50)	0(0)	0.004(73)	non tumor-specific	nAS	yes
UN_SLC39A4_LS0012	chr8:144412626|144412883:+	SLC39A4	solute carrier family 39 member 4	protein coding gene	yes	.	3.584	2.551	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC02235_LS003	chr8:81885440|81922792:+	LINC02235	long intergenic non-protein coding RNA 2235	no	no	ENST00000534675.1	0.099	0.000	0.800	0.005(48)	0(0)	0.004(70)	non tumor-specific	nAS	yes
ZNF143_LS002	chr11:9461076|9463771:+	ZNF143	zinc finger protein 143	protein coding gene	no	ENST00000412390.6	0.038	0.019	0.622	0.024(232)	0.03(21)	0.03(514)	non tumor-specific	exon_skip	yes
POMT1_LS025	chr9:131511467|131512041:+	POMT1	protein O-mannosyltransferase 1	protein coding gene	no	ENST00000404875.6;ENST00000423007.5;ENST00000441334.5;ENST00000341012.11;ENST00000372228.7;ENST00000402686.7	24.133	17.684	22.243	0.987(9452)	0.997(700)	0.978(17007)	non tumor-specific	alt_5prime;intron_retention	yes
UN_STK36_LS0032	chr2:218699348|218701324:+	STK36	serine/threonine kinase 36	protein coding gene	no	.	5.492	0.064	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
AP000424.1_LS002	chr8:100475836|100500965:+	AP000424.1	-	lncRNA gene	no	ENST00000523831.1	0.481	0.157	0.941	0.04(381)	0.057(40)	0.013(231)	non tumor-specific	nAS	yes
PRSS46P_LS002	chr3:46733895|46734065:-	PRSS46P	serine protease 46, pseudogene	pseudogene	no	ENST00000463091.2;ENST00000645911.1	1.033	0.000	0.801	0.002(17)	0(0)	0.073(1261)	non tumor-specific	nAS	yes
FRY_LS038	chr13:32202040|32202356:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	5.542	4.185	4.143	0.501(4801)	0.749(526)	0.899(15634)	non tumor-specific	nAS	yes
MYO15B_LS089	chr17:75615884|75617085:+	MYO15B	myosin XVB	protein coding gene	no	ENST00000619501.4	0.023	0.018	0.705	0.038(363)	0.024(17)	0.049(858)	non tumor-specific	nAS	yes
UN_AC018638.8_LS0004	chr7:128623132|128623575:+	AC018638.8	-	pseudogene	no	.	1.543	0.687	0.000	0.065(626)	0.08(56)	0(0)	non tumor-specific	nAS	no
UN_LYPLA2_LS0082	chr1:23795160|23795220:-	LYPLA2	lysophospholipase 2	protein coding gene	no	.	10.528	1.180	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	nAS	no
OTOG_LS016	chr11:17561137|17561662:+	OTOG	otogelin	protein coding gene	no	ENST00000399391.6;ENST00000399397.5;ENST00000498332.5	1.346	0.000	0.980	0.007(70)	0(0)	0.016(276)	non tumor-specific	nAS	yes
UN_SNCAIP_LS0021	chr5:122321764|122323320:-	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	.	1.707	1.842	0.000	0.002(17)	0.01(7)	0(0)	non tumor-specific	nAS	no
UBR4_LS028	chr1:19099677|19100078:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000467272.6	0.223	2.051	0.666	0.34(3262)	0.422(296)	0.042(727)	non tumor-specific	alt_3prime;alt_5prime	yes
SNTG1_LS027	chr8:50569019|50575668:+	SNTG1	syntrophin gamma 1	protein coding gene	no	ENST00000642286.1	1.271	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
DCUN1D1_LS009	chr3:182965753|182980835:-	DCUN1D1	defective in cullin neddylation 1 domain containing 1	protein coding gene	yes	ENST00000487822.5;ENST00000466812.1	0.690	0.204	0.698	0.01(92)	0.019(13)	0.077(1336)	non tumor-specific	nAS	yes
HS6ST2_LS004	chrX:132708494|132956808:-	HS6ST2	heparan sulfate 6-O-sulfotransferase 2	protein coding gene	no	ENST00000521489.5;ENST00000370833.6	2.229	1.486	1.348	0.136(1300)	0.194(136)	0.148(2567)	non tumor-specific	exon_skip	yes
UN_ARSDP1_UP_LS0001	chrY:12328043|12347136:+	ARSDP1	arylsulfatase D pseudogene 1	pseudogene	no	.	1.876	0.658	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RBPMS_LS0001	chr8:30384637|30384659:-	RBPMS	RNA binding protein, mRNA processing factor	protein coding gene	no	.	2.298	0.629	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_F5_LS0121	chr1:169541252|169541280:+	F5	coagulation factor V	protein coding gene	no	.	8.389	4.896	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ADI1P2_UP_LS0001	chr8:102699021|102716276:-	ADI1P2	acireductone dioxygenase 1 pseudogene 2	pseudogene	no	.	2.269	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
ADAM12_LS006	chr10:126042235|126043040:-	ADAM12	ADAM metallopeptidase domain 12	protein coding gene	no	ENST00000368676.8	0.921	0.218	0.807	0.135(1293)	0.047(33)	0.082(1423)	non tumor-specific	alt_3prime	yes
ARFGEF3_LS003	chr6:138207123|138209910:+	ARFGEF3	ARFGEF family member 3	protein coding gene	no	ENST00000251691.4	7.163	5.555	1.612	0.47(4500)	0.667(468)	0.461(8016)	non tumor-specific	nAS	yes
HOOK1_LS024	chr1:59868351|59871042:+	HOOK1	hook microtubule tethering protein 1	protein coding gene	no	ENST00000371208.3;ENST00000465876.5;ENST00000466803.1	11.371	12.248	7.390	0.851(8155)	0.94(660)	0.688(11961)	non tumor-specific	nAS	yes
UN_AC005538.1_UP_LS0009	chr2:234148608|234191832:-	AC005538.1	-	lncRNA gene	no	.	2.154	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
MLLT10_LS028	chr10:21673919|21681332:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	ENST00000631589.1;ENST00000377072.7;ENST00000307729.11;ENST00000377059.7;ENST00000438473.5;ENST00000420525.1	9.416	5.956	13.808	0.906(8684)	0.974(684)	0.967(16811)	non tumor-specific	exon_skip;mutex_exons	yes
FGF8_LS004	chr10:101774879|101775542:-	FGF8	fibroblast growth factor 8	protein coding gene	yes	ENST00000469792.6	0.001	0.000	0.945	0(3)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_OPA1_LS0044	chr3:193694788|193695380:+	OPA1	OPA1 mitochondrial dynamin like GTPase	protein coding gene	no	.	1.533	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
IGHMBP2_LS001	chr11:68904038|68906069:+	IGHMBP2	immunoglobulin mu DNA binding protein 2	protein coding gene	no	ENST00000255078.7;ENST00000539224.1;ENST00000545146.1	3.937	2.527	6.910	0.909(8705)	0.942(661)	0.96(16691)	non tumor-specific	exon_skip	yes
TTC19_LS001	chr17:16000032|16000118:+	TTC19	tetratricopeptide repeat domain 19	protein coding gene	no	ENST00000261647.9;ENST00000466729.5;ENST00000475723.5;ENST00000583704.1;ENST00000470399.1	1.121	1.125	8.568	0.867(8308)	0.91(639)	0.955(16603)	non tumor-specific	intron_retention	yes
SEC16B_LS010	chr1:177932806|177933214:-	SEC16B	SEC16 homolog B, endoplasmic reticulum export factor	protein coding gene	no	ENST00000495165.5;ENST00000308284.10;ENST00000528461.5	7.188	4.814	7.191	0.608(5830)	0.689(484)	0.91(15820)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COL1A1_LS0521	chr17:50186900|50190840:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	8.298	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
MAGED1_LS008	chrX:51894794|51895053:+	MAGED1	MAGE family member D1	protein coding gene	no	ENST00000375695.2	0.144	1.448	0.977	0.227(2176)	0.178(125)	0.441(7657)	non tumor-specific	exon_skip	yes
UN_AMYP1_UP_LS0012	chr1:103651250|103656285:+	AMYP1	amylase alpha pseudogene 1	pseudogene	no	.	1.992	1.197	0.000	0.044(420)	0.124(87)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CBX3_LS0011	chr7:26208555|26211650:+	CBX3	chromobox 3	protein coding gene	no	.	47.151	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
PRC1-AS1_LS001	chr15:90966678|90972860:+	PRC1-AS1	PRC1 antisense RNA 1	lncRNA gene	no	ENST00000556200.1	0.123	0.046	0.742	0.349(3343)	0.135(95)	0.015(256)	non tumor-specific	nAS	yes
SLC4A2_LS034	chr7:151074293|151074675:+	SLC4A2	solute carrier family 4 member 2	protein coding gene	no	.;.	7.709	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
MGLL_LS003	chr3:127692323|127710576:-	MGLL	monoglyceride lipase	protein coding gene	no	ENST00000487473.5	0.020	0.021	0.779	0.584(5595)	0.754(529)	0.305(5303)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BAALC-AS1_LS0004	chr8:103157038|103285838:-	BAALC-AS1	BAALC antisense RNA 1	lncRNA gene	no	.	3.474	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LRRC4B_LS0025	chr19:50551307|50567944:-	LRRC4B	leucine rich repeat containing 4B	protein coding gene	no	.	2.302	0.740	0.000	0.068(652)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MIR4704_UP_LS0004	chr13:66141647|66146877:+	MIR4704	microRNA 4704	small non-coding RNA gene	no	.	18.274	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ADAMTS18_LS002	chr16:77284071|77289264:-	ADAMTS18	ADAM metallopeptidase with thrombospondin type 1 motif 18	protein coding gene	yes	ENST00000282849.9	4.290	2.277	2.253	0.122(1166)	0.142(100)	0.325(5655)	non tumor-specific	exon_skip	yes
PRODH_LS004	chr22:18918491|18919451:-	PRODH	proline dehydrogenase 1	protein coding gene	yes	ENST00000610940.4;ENST00000491604.5;ENST00000420436.5;ENST00000313755.9;ENST00000429300.5;ENST00000482858.5;ENST00000334029.6;ENST00000357068.10;ENST00000609229.1	17.471	17.223	36.578	0.842(8064)	0.939(659)	0.935(16260)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COX11_LS0002	chr17:54964852|54965577:-	COX11	cytochrome c oxidase copper chaperone COX11	protein coding gene	no	.	2.634	1.567	0.000	0.046(440)	0.073(51)	0(0)	non tumor-specific	exon_skip	no
RPL28_LS004	chr19:55386438|55386570:+	RPL28	ribosomal protein L28	protein coding gene	no	ENST00000344063.6;ENST00000431533.6;ENST00000428193.6;ENST00000558815.5;ENST00000560583.5;ENST00000560055.5;ENST00000560881.5;ENST00000559463.5;ENST00000558131.1;ENST00000426763.3;ENST00000558752.1	5478.052	1894.459	2710.656	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_RHEX_LS0066	chr1:206062216|206062879:+	RHEX	regulator of hemoglobinization and erythroid cell expansion	protein coding gene	no	.	7.457	0.512	0.000	0.019(185)	0.004(3)	0(0)	non tumor-specific	nAS	no
ITSN2_LS038	chr2:24302102|24303799:-	ITSN2	intersectin 2	protein coding gene	no	ENST00000361999.7;ENST00000355123.8;ENST00000622089.4;ENST00000406921.7;ENST00000412011.5	17.091	14.286	14.648	0.867(8308)	0.959(673)	0.971(16879)	non tumor-specific	nAS	yes
UN_NPIPB3_LS0065	chr16:21403549|21404522:+	NPIPB3	nuclear pore complex interacting protein family member B3	protein coding gene	no	.	4.029	0.271	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC098864.1_LS006	chr4:182081826|182144047:-	AC098864.1	-	lncRNA gene	no	ENST00000509012.5	2.396	0.199	0.885	0.009(82)	0.024(17)	0.17(2952)	non tumor-specific	nAS	yes
UN_RPL31P41_UP_LS0012	chr8:64858915|64860010:+	RPL31P41	ribosomal protein L31 pseudogene 41	pseudogene	no	.	1.122	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PPFIA1_LS050	chr11:70362488|70365373:+	PPFIA1	PTPRF interacting protein alpha 1	protein coding gene	no	ENST00000648755.1;ENST00000644155.1;ENST00000526262.5;ENST00000638133.1	2.338	0.958	1.472	0.035(334)	0.023(16)	0.47(8169)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DCAF1_LS0022	chr3:51414808|51416787:-	DCAF1	DDB1 and CUL4 associated factor 1	protein coding gene	no	.	3.409	0.458	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
IGHG3_LS007	chr14:105770525|105770669:-	IGHG3	immunoglobulin heavy constant gamma 3 (G3m marker)	no	no	ENST00000641136.1;ENST00000390551.6	82.564	29.572	5.320	0.856(8199)	0.916(643)	0.679(11808)	non tumor-specific	nAS	yes
UN_APAF1_LS0031	chr12:98712435|98715460:+	APAF1	apoptotic peptidase activating factor 1	protein coding gene	yes	.	14.961	0.364	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NUP85_LS035	chr17:75226157|75228998:+	NUP85	nucleoporin 85	protein coding gene	no	ENST00000580879.5;ENST00000580879.5	0.260	0.237	4.221	0.785(7519)	0.724(508)	0.922(16028)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ELK1P1_UP_LS0001	chr7:45425788|45454892:-	ELK1P1	ELK1 pseudogene 1	pseudogene	no	.	2.908	0.926	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ADGRL2_LS0080	chr1:81987029|81987260:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	.	3.844	0.679	0.000	0.01(93)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_BICDL1_LS0022	chr12:120062763|120064733:+	BICDL1	BICD family like cargo adaptor 1	protein coding gene	no	.	13.322	13.044	0.000	0.016(151)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_TPSD1_UP_LS0026	chr16:1229267|1240939:+	TPSD1	tryptase delta 1	protein coding gene	no	.	2.629	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UBR4_LS025	chr1:19096638|19099597:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	.;.	1.384	1.366	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PRPS1_LS008	chrX:107645350|107647606:+	PRPS1	phosphoribosyl pyrophosphate synthetase 1	protein coding gene	no	ENST00000372428.8;ENST00000372435.9;ENST00000643795.1;ENST00000372418.3;ENST00000644642.1	118.816	64.625	49.784	0.996(9543)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_PLEKHA5_LS0034	chr12:19268578|19269770:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	.	1.459	0.047	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC009126.1_LS0019	chr5:96881751|96934122:-	AC009126.1	-	lncRNA gene	no	.	0.713	0.246	0.000	0.003(30)	0.016(11)	0(0)	non tumor-specific	nAS	no
ANGEL2_LS009	chr1:213007198|213008210:-	ANGEL2	angel homolog 2	protein coding gene	no	ENST00000366962.7;ENST00000360506.6;ENST00000535388.2;ENST00000476904.5;ENST00000460337.5	17.447	10.747	11.116	0.986(9450)	0.994(698)	0.976(16961)	non tumor-specific	exon_skip	yes
UN_HEXB_LS0016	chr5:74705084|74721603:-	HEXB	hexosaminidase subunit beta	protein coding gene	no	.	1.249	0.045	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
EYA1_LS035	chr8:71535848|71568725:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000518177.2	0.616	0.000	0.709	0.002(17)	0(0)	0.001(19)	non tumor-specific	nAS	yes
SLC30A5_LS019	chr5:69121752|69121754:+	SLC30A5	solute carrier family 30 member 5	protein coding gene	no	ENST00000621204.4	46.055	0.000	0.603	0(1)	0(0)	0.024(416)	non tumor-specific	nAS	yes
UN_PARP9_LS0027	chr3:122534708|122536168:-	PARP9	poly(ADP-ribose) polymerase family member 9	protein coding gene	no	.	4.623	1.253	0.000	0.091(874)	0.114(80)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_ZMIZ1_LS0014	chr10:79110534|79118915:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	.	2.273	0.144	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COL1A2_LS0113	chr7:94423075|94427736:-	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	.	2.286	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IKBKE_LS0033	chr1:206494969|206496112:+	IKBKE	inhibitor of nuclear factor kappa B kinase subunit epsilon	protein coding gene	yes	.	4.721	0.095	0.000	0.011(106)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF468_UP_LS0001	chr19:52892704|52992204:-	ZNF468	zinc finger protein 468	protein coding gene	no	.	2.945	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ACE_LS019	chr17:63485066|63485236:+	ACE	angiotensin I converting enzyme	protein coding gene	no	ENST00000290863.10;ENST00000582005.5;ENST00000413513.7;ENST00000579314.5	0.053	0.019	0.701	0.026(250)	0.021(15)	0.035(608)	non tumor-specific	alt_5prime	yes
ZNF471_LS002	chr19:56510900|56511517:+	ZNF471	zinc finger protein 471	protein coding gene	no	ENST00000591759.1	0.567	0.382	2.669	0.343(3291)	0.5(351)	0.799(13884)	non tumor-specific	alt_5prime;exon_skip	yes
ANKRD49_LS003	chr11:94496828|94498071:+	ANKRD49	ankyrin repeat domain 49	protein coding gene	no	ENST00000535502.1	0.113	0.013	0.654	0.332(3181)	0.387(272)	0.037(650)	non tumor-specific	alt_5prime;intron_retention	yes
DNAL1_LS001	chr14:73645042|73651167:+	DNAL1	dynein axonemal light chain 1	protein coding gene	no	ENST00000555919.7	0.127	0.091	0.735	0.197(1884)	0.189(133)	0.198(3438)	non tumor-specific	exon_skip	yes
UN_TPPP3_LS0001	chr16:67389883|67389933:+	TPPP3	tubulin polymerization promoting protein family member 3	protein coding gene	no	.	10.115	0.604	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0667	chr21:8401644|8445766:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	142.750	0.747	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC02266_LS0001	chr4:145336119|145336205:-	LINC02266	long intergenic non-protein coding RNA 2266	lncRNA gene	no	.	3.480	0.909	0.000	0.023(223)	0.017(12)	0(0)	non tumor-specific	nAS	no
SSBP2_LS002	chr5:81420533|81437430:-	SSBP2	single stranded DNA binding protein 2	protein coding gene	yes	ENST00000509053.5	0.194	0.127	1.859	0.17(1629)	0.212(149)	0.777(13503)	non tumor-specific	exon_skip	yes
LINC-PINT_LS014	chr7:130959970|130967389:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000647288.1	1.720	0.793	0.000	0.007(66)	0.014(10)	0(0)	non tumor-specific	nAS	yes
UN_ABCC11_LS0023	chr16:48230573|48247314:-	ABCC11	ATP binding cassette subfamily C member 11	protein coding gene	no	.	2.061	0.212	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AL592486.1_UP_LS0001	chr9:88681818|88682510:-	AL592486.1	-	lncRNA gene	no	.	2.777	0.772	0.000	0.016(154)	0.016(11)	0(0)	non tumor-specific	nAS	no
ZNF638_LS001	chr2:71276754|71348753:+	ZNF638	zinc finger protein 638	protein coding gene	no	ENST00000410075.5	0.200	0.048	0.921	0.453(4339)	0.484(340)	0.313(5443)	non tumor-specific	exon_skip	yes
UN_PRDX6_LS0004	chr1:173478584|173480586:+	PRDX6	peroxiredoxin 6	protein coding gene	no	.	2.668	0.136	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PGS1_LS0036	chr17:78419725|78423192:+	PGS1	phosphatidylglycerophosphate synthase 1	protein coding gene	no	.	3.773	0.090	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
NAA80_LS006	chr3:50298083|50298821:-	NAA80	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein coding gene	no	ENST00000442620.5;ENST00000452674.1	0.057	0.018	0.809	0.304(2917)	0.292(205)	0.337(5851)	non tumor-specific	intron_retention	yes
UN_AC110285.2_UP_LS0001	chr17:81390483|81390918:-	AC110285.2	-	lncRNA gene	no	.	5.683	0.108	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TTLL3_LS0010	chr3:9817759|9818581:+	TTLL3	tubulin tyrosine ligase like 3	protein coding gene	no	.	3.450	0.507	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RAD50_LS0020	chr5:132604046|132604844:+	RAD50	RAD50 double strand break repair protein	protein coding gene	no	.	6.487	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AL645728.1_UP_LS0431	chr1:1482564|1520228:+	AL645728.1	-	lncRNA gene	no	.	8.669	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TAF2_LS014	chr8:119762608|119767003:-	TAF2	TATA-box binding protein associated factor 2	protein coding gene	no	ENST00000519355.5	0.031	0.008	0.662	0.538(5155)	0.563(395)	0.057(988)	non tumor-specific	alt_5prime;exon_skip	yes
PLCD4_LS012	chr2:218621599|218632295:+	PLCD4	phospholipase C delta 4	protein coding gene	no	ENST00000465713.5	0.300	0.046	0.591	0.003(26)	0.006(4)	0.024(410)	non tumor-specific	nAS	yes
UN_AKR1C4_UP_LS0025	chr10:4972749|5102516:+	AKR1C4	aldo-keto reductase family 1 member C4	protein coding gene	no	.	66.903	13.753	0.000	0.017(167)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_WWOX_LS0099	chr16:78984615|78996202:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	2.608	0.074	0.000	0.019(185)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
VAX2_LS016	chr2:70961022|70961596:+	VAX2	ventral anterior homeobox 2	protein coding gene	no	ENST00000432367.6;ENST00000646783.1	79.336	64.298	2.651	0.661(6337)	0.654(459)	0.736(12801)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MBTPS1_LS0017	chr16:84060813|84061783:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	.	8.148	0.522	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNPY4_LS002	chr7:100120399|100121161:+	CNPY4	canopy FGF signaling regulator 4	protein coding gene	no	ENST00000470153.1	0.038	0.030	0.829	0.339(3244)	0.279(196)	0.369(6414)	non tumor-specific	alt_5prime	yes
BARD1_LS014	chr2:214769312|214780560:-	BARD1	BRCA1 associated RING domain 1	protein coding gene	yes	ENST00000260947.8;ENST00000617164.4;ENST00000455743.5	6.304	2.181	3.003	0.756(7241)	0.762(535)	0.833(14483)	non tumor-specific	alt_5prime;exon_skip	yes
DMKN_LS023	chr19:35500580|35502136:-	DMKN	dermokine	protein coding gene	no	ENST00000460327.5;ENST00000434389.5;ENST00000488542.6;ENST00000402589.6;ENST00000462721.5;ENST00000339686.7;ENST00000490622.5;ENST00000436012.5;ENST00000467532.5;ENST00000414866.6;ENST00000480502.5;ENST00000467637.5;ENST00000429837.5;ENST00000419602.5;ENST00000462126.5;ENST00000443640.5;ENST00000597212.5;ENST00000472252.6;ENST00000602781.5;ENST00000492341.6;ENST00000460051.5;ENST00000498211.5;ENST00000483855.5;ENST00000493979.5;ENST00000464709.6;ENST00000463292.5;ENST00000465927.5;ENST00000464894.5;ENST00000493517.5;ENST00000466587.6;ENST00000602679.5;ENST00000482321.5;ENST00000476246.5;ENST00000471786.6;ENST00000486450.5;ENST00000498593.5;ENST00000471017.5;ENST00000498269.5	4.257	2.909	18.824	0.88(8436)	0.976(685)	0.954(16579)	non tumor-specific	alt_3prime;exon_skip	yes
TNNI3K_LS014	chr1:74367964|74369022:+	TNNI3K	TNNI3 interacting kinase	protein coding gene	no	ENST00000326637.7	1.234	1.148	5.782	0.207(1988)	0.489(343)	0.896(15566)	non tumor-specific	nAS	yes
UN_TOX4_LS0031	chr14:21493012|21493040:-	TOX4	TOX high mobility group box family member 4	protein coding gene	no	.	5.375	0.721	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
CILP2_LS006	chr19:19541246|19542375:+	CILP2	cartilage intermediate layer protein 2	protein coding gene	no	ENST00000586018.5;ENST00000291495.5;ENST00000588333.2	3.085	0.870	0.856	0.412(3950)	0.151(106)	0.272(4731)	non tumor-specific	nAS	yes
UN_LINC00513_LS0007	chr7:130866685|130884317:-	LINC00513	long intergenic non-protein coding RNA 513	lncRNA gene	no	.	8.354	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
BBIP1_LS001	chr10:110900526|110901026:-	BBIP1	BBSome interacting protein 1	protein coding gene	no	ENST00000398289.2	0.016	0.027	0.848	0.401(3843)	0.442(310)	0.356(6187)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LPGAT1_LS0038	chr1:211829319|211830045:-	LPGAT1	lysophosphatidylglycerol acyltransferase 1	protein coding gene	no	.	0.873	0.141	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
HINT3_LS003	chr6:125972328|125974847:+	HINT3	histidine triad nucleotide binding protein 3	protein coding gene	no	ENST00000229633.6	35.491	33.303	28.031	0.985(9436)	0.994(698)	0.978(17004)	non tumor-specific	nAS	yes
UN_TSPAN14_LS0136	chr10:80518803|80518909:-	TSPAN14	tetraspanin 14	protein coding gene	no	.	1.685	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
LGMN_LS032	chr14:92733810|92748489:-	LGMN	legumain	protein coding gene	no	ENST00000554397.5	0.011	0.013	0.642	0.173(1661)	0.182(128)	0.095(1653)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL645728.1_UP_LS0565	chr1:1496024|1534429:+	AL645728.1	-	lncRNA gene	no	.	6.325	1.186	0.000	0.071(683)	0.04(28)	0(0)	non tumor-specific	nAS	no
UN_SAGE1_LS0016	chrX:135905782|135906024:+	SAGE1	sarcoma antigen 1	protein coding gene	no	.	1.487	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_AC092295.1_LS0001	chr19:36528851|36534861:+	AC092295.1	-	lncRNA gene	no	.	3.160	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TSPAN8_LS0029	chr12:71158040|71158530:-	TSPAN8	tetraspanin 8	protein coding gene	no	.	3.870	0.135	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_IGFBP5_LS0194	chr2:216674051|216674096:+	IGFBP5	insulin like growth factor binding protein 5	protein coding gene	yes	.	25.822	1.125	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
SORBS2_LS050	chr4:185678822|185775060:-	SORBS2	sorbin and SH3 domain containing 2	protein coding gene	no	ENST00000457247.5	0.051	0.013	0.800	0.007(69)	0.021(15)	0.214(3721)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_NOL3_LS0009	chr16:67171457|67173929:+	NOL3	nucleolar protein 3	protein coding gene	no	.	3.986	0.570	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MT1X_LS0005	chr16:56683177|56684046:-	MT1X	metallothionein 1X	protein coding gene	no	.	24.699	12.355	0.000	0.005(47)	0.01(7)	0(0)	non tumor-specific	nAS	no
EIF2S3B_LS001	chr12:10507210|10522603:+	EIF2S3B	eukaryotic translation initiation factor 2 subunit gamma B	protein coding gene	no	ENST00000322446.3	0.001	0.007	0.597	0.136(1300)	0.108(76)	0.002(29)	non tumor-specific	nAS	yes
UN_AC011491.1_UP_LS0008	chr19:6369462|6372752:+	AC011491.1	-	pseudogene	no	.	22.015	1.677	0.000	0.007(63)	0.004(3)	0(0)	non tumor-specific	nAS	no
CBX8_LS004	chr17:79796315|79796930:-	CBX8	chromobox 8	protein coding gene	yes	.;.	1.145	2.037	0.000	0(1)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_USP18_LS0003	chr22:18164920|18167890:+	USP18	ubiquitin specific peptidase 18	protein coding gene	no	.	7.065	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PGLYRP3_LS0009	chr1:153309035|153310611:-	PGLYRP3	peptidoglycan recognition protein 3	protein coding gene	no	.	2.117	0.583	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC096741.1_LS004	chr4:169220134|169220285:+	AC096741.1	-	lncRNA gene	no	ENST00000510225.1	5.325	0.000	0.591	0(3)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_COASY_LS0015	chr17:42562664|42562686:-	COASY	Coenzyme A synthase	protein coding gene	no	.	3.456	0.526	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
DNAH10OS_LS001	chr12:123930543|123934065:-	DNAH10OS	dynein axonemal heavy chain 10 opposite strand	lncRNA gene	no	ENST00000514254.3	1.205	0.772	0.740	0.023(218)	0.031(22)	0.023(397)	non tumor-specific	nAS	yes
SIGLECL1_LS007	chr19:51265649|51265777:+	SIGLECL1	SIGLEC family like 1	protein coding gene	no	ENST00000597610.5;ENST00000316401.11;ENST00000614422.4	4.015	0.000	0.675	0.002(23)	0(0)	0.007(117)	non tumor-specific	nAS	yes
PLAGL1_LS042	chr6:143968978|144064468:-	PLAGL1	PLAG1 like zinc finger 1	protein coding gene	yes	ENST00000437412.5;ENST00000437412.5	0.433	0.274	0.863	0.044(418)	0.064(45)	0.229(3984)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PALM_LS0019	chr19:727082|727545:-	PALM	paralemmin	protein coding gene	no	.	1.291	0.486	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_THEM6_LS0035	chr8:142730376|142732621:-	THEM6	thioesterase superfamily member 6	protein coding gene	no	.	2.448	2.882	0.000	0.011(102)	0.026(18)	0(0)	non tumor-specific	nAS	no
NECAB2_LS002	chr16:83972175|83978444:+	NECAB2	N-terminal EF-hand calcium binding protein 2	protein coding gene	no	ENST00000305202.8;ENST00000565691.5	1.667	3.339	1.704	0.224(2143)	0.15(105)	0.474(8242)	non tumor-specific	exon_skip	yes
ZNF542P_LS007	chr19:56369337|56373157:+	ZNF542P	zinc finger protein 542, pseudogene	pseudogene	no	ENST00000467807.5;ENST00000462524.5;ENST00000468396.5;ENST00000587341.5	0.080	0.173	0.839	0.394(3775)	0.595(418)	0.388(6752)	non tumor-specific	nAS	yes
ABCG4_LS003	chr11:119149688|119149954:+	ABCG4	ATP binding cassette subfamily G member 4	protein coding gene	no	ENST00000615496.4	0.051	0.001	0.858	0.009(91)	0.001(1)	0.035(602)	non tumor-specific	nAS	yes
UN_CENPP_LS0009	chr9:92345787|92347412:+	CENPP	centromere protein P	protein coding gene	no	.	2.793	0.000	0.000	0.006(55)	0(0)	0(0)	non tumor-specific	exon_skip	no
ARPC5L_LS001	chr9:124862398|124863988:+	ARPC5L	actin related protein 2/3 complex subunit 5 like	protein coding gene	no	ENST00000353214.6	1.161	0.293	1.620	0.204(1956)	0.224(157)	0.462(8028)	non tumor-specific	nAS	yes
AL355076.2_LS003	chr14:65247723|65302529:-	AL355076.2	-	lncRNA gene	no	ENST00000555736.1	1.691	0.196	0.639	0.004(38)	0.001(1)	0.012(201)	non tumor-specific	nAS	yes
PRR5_LS010	chr22:44714671|44726577:+	PRR5	proline rich 5	protein coding gene	yes	ENST00000477331.5	2.972	1.816	0.993	0.646(6187)	0.679(477)	0.466(8093)	non tumor-specific	exon_skip	yes
UN_SERPINE2_UP_LS0002	chr2:224057041|224058864:-	SERPINE2	serpin family E member 2	protein coding gene	no	.	2.273	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
IGHV1OR15-9_LS001	chr15:19964972|19965056:-	IGHV1OR15-9	immunoglobulin heavy variable 1/OR15-9 (non-functional)	no	no	ENST00000338912.5	0.087	0.037	0.674	0.039(376)	0.064(45)	0.002(38)	non tumor-specific	nAS	yes
UN_DEDD2_LS0051	chr19:42209840|42220074:-	DEDD2	death effector domain containing 2	protein coding gene	no	.	2.150	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
C1orf61_LS056	chr1:156414753|156426798:-	C1orf61	MIR9-1 host gene	protein coding gene	no	ENST00000471156.5;ENST00000497824.5;ENST00000310027.9;ENST00000357975.4;ENST00000484428.5;ENST00000489877.5;ENST00000476966.5;ENST00000471156.5;ENST00000497824.5;ENST00000310027.9;ENST00000357975.4;ENST00000484428.5;ENST00000489877.5;ENST00000476966.5	39.273	4.131	1.699	0.118(1126)	0.017(12)	0.383(6659)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ADAM33_LS0028	chr20:3674849|3674988:-	ADAM33	ADAM metallopeptidase domain 33	protein coding gene	no	.	5.356	2.097	0.000	0.03(287)	0.095(67)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ADGRB3_LS014	chr6:69048334|69049271:+	ADGRB3	adhesion G protein-coupled receptor B3	protein coding gene	no	ENST00000370598.5;ENST00000546190.5	4.129	3.351	2.518	0.121(1161)	0.201(141)	0.673(11701)	non tumor-specific	nAS	yes
TOGARAM1_LS014	chr14:45027474|45028176:+	TOGARAM1	TOG array regulator of axonemal microtubules 1	protein coding gene	no	ENST00000361577.7;ENST00000557423.5;ENST00000361462.6;ENST00000556105.1	5.309	4.679	7.344	0.864(8275)	0.96(674)	0.95(16512)	non tumor-specific	exon_skip	yes
USP45_LS025	chr6:99482883|99488200:-	USP45	ubiquitin specific peptidase 45	protein coding gene	no	ENST00000500704.6;ENST00000327681.10;ENST00000369233.6;ENST00000506871.5;ENST00000507717.5;ENST00000329966.10;ENST00000472914.6	6.682	4.720	7.705	0.918(8799)	0.923(648)	0.961(16709)	non tumor-specific	alt_3prime;exon_skip	yes
ASTN2_LS029	chr9:117141478|117214358:-	ASTN2	astrotactin 2	protein coding gene	no	ENST00000313400.8;ENST00000373986.7	11.737	3.889	2.389	0.29(2778)	0.437(307)	0.586(10184)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BX284668.6_UP_LS0005	chr1:16978314|16980951:-	BX284668.6	-	lncRNA gene	no	.	3.517	0.000	0.000	0.007(65)	0(0)	0(0)	non tumor-specific	nAS	no
STEAP2_LS020	chr7:90212045|90225498:+	STEAP2	STEAP2 metalloreductase	protein coding gene	no	.;.	1.015	0.086	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC009310.1_UP_LS0019	chr2:221286381|221288372:-	AC009310.1	-	pseudogene	no	.	2.688	0.657	0.000	0.009(84)	0.031(22)	0(0)	non tumor-specific	nAS	no
KRAS_LS006	chr12:25227412|25245274:-	KRAS	KRAS proto-oncogene, GTPase	protein coding gene	yes	ENST00000311936.7;ENST00000256078.8	20.091	14.287	10.910	0.961(9212)	0.983(690)	0.973(16913)	non tumor-specific	exon_skip	yes
PHF21A_LS042	chr11:46092223|46117922:-	PHF21A	PHD finger protein 21A	protein coding gene	no	ENST00000525438.5;ENST00000527782.5;ENST00000532010.5;ENST00000528893.1	0.430	0.318	1.602	0.284(2720)	0.343(241)	0.767(13331)	non tumor-specific	exon_skip	yes
UN_RF00017_UP_LS0230	chr2:63107008|63160118:+	RF00017	-	small non-coding RNA gene	no	.	0.643	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
WDPCP_LS034	chr2:63813707|63827622:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000490935.5;ENST00000467687.1	4.237	1.994	0.913	0.012(115)	0.1(70)	0.11(1914)	non tumor-specific	exon_skip	yes
UN_EEF1A2_LS0020	chr20:63496310|63497620:-	EEF1A2	eukaryotic translation elongation factor 1 alpha 2	protein coding gene	yes	.	54.131	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AC012157.1_LS001	chr12:115961585|115962632:+	AC012157.1	-	lncRNA gene	no	ENST00000549725.1	0.368	0.000	0.730	0.004(43)	0.001(1)	0(7)	non tumor-specific	nAS	yes
UN_AC090365.1_LS0005	chr18:28695088|28720937:+	AC090365.1	-	lncRNA gene	no	.	1.324	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRD5A3_LS0024	chr4:55367722|55369087:+	SRD5A3	steroid 5 alpha-reductase 3	protein coding gene	no	.	0.887	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	exon_skip	no
DAGLA_LS018	chr11:61737755|61738135:+	DAGLA	diacylglycerol lipase alpha	protein coding gene	no	ENST00000257215.9;ENST00000540717.1	7.833	7.524	5.021	0.732(7014)	0.813(571)	0.901(15661)	non tumor-specific	nAS	yes
FAM156B_LS006	chrX:52897409|52899059:+	FAM156B	family with sequence similarity 156 member B	protein coding gene	no	ENST00000616419.4	0.012	0.015	0.659	0.197(1883)	0.258(181)	0.002(34)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CTBP1_LS025	chr4:1238337|1248916:-	CTBP1	C-terminal binding protein 1	protein coding gene	no	ENST00000290921.10	0.516	0.965	8.638	0.968(9277)	0.983(690)	0.975(16952)	non tumor-specific	exon_skip	yes
EIF3G_LS009	chr19:10116989|10117084:-	EIF3G	eukaryotic translation initiation factor 3 subunit G	protein coding gene	no	ENST00000253108.8;ENST00000589454.5;ENST00000588709.5;ENST00000589009.5;ENST00000593066.5;ENST00000589674.1;ENST00000593095.5;ENST00000587993.5	264.045	148.213	405.961	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
GUCD1_LS013	chr22:24549001|24555615:-	GUCD1	guanylyl cyclase domain containing 1	protein coding gene	no	ENST00000621833.4;ENST00000404664.7	2.439	2.158	4.410	0.937(8975)	0.967(679)	0.945(16431)	non tumor-specific	exon_skip	yes
ADCY3_LS029	chr2:24838622|24839873:-	ADCY3	adenylate cyclase 8	protein coding gene	no	ENST00000260600.9;ENST00000405392.5;ENST00000454027.1;ENST00000427849.5;ENST00000435135.5	17.608	9.825	23.985	0.936(8969)	0.95(667)	0.973(16909)	non tumor-specific	exon_skip	yes
UN_PCDHGA11_LS0106	chr5:141512577|141512628:-	PCDHGA11	protocadherin gamma subfamily A, 11	protein coding gene	no	.	3.776	0.326	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SLCO1A2_LS0011	chr12:21273385|21274469:-	SLCO1A2	solute carrier organic anion transporter family member 1A2	protein coding gene	no	.	4.834	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ANXA9_LS0005	chr1:150984069|150984293:+	ANXA9	annexin A9	protein coding gene	no	.	3.368	2.627	0.000	0.002(21)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
TSPOAP1_LS035	chr17:58322776|58322950:-	TSPOAP1	TSPO associated protein 1	protein coding gene	no	ENST00000268893.10;ENST00000343736.8	6.334	7.425	13.764	0.335(3214)	0.499(350)	0.956(16615)	non tumor-specific	exon_skip	yes
UN_AC099518.5_UP_LS0007	chr16:19305215|19367811:-	AC099518.5	-	lncRNA gene	no	.	1.109	0.277	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC26_LS023	chr7:139181198|139189321:+	TTC26	tetratricopeptide repeat domain 26	protein coding gene	no	ENST00000430935.5	0.055	0.039	0.642	0.256(2453)	0.255(179)	0.064(1119)	non tumor-specific	exon_skip	yes
UN_AC144831.1_UP_LS0003	chr17:83100676|83100726:+	AC144831.1	-	lncRNA gene	no	.	1.580	0.419	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZSCAN5A_LS0025	chr19:56235297|56236033:-	ZSCAN5A	zinc finger and SCAN domain containing 5A	protein coding gene	no	.	3.890	0.831	0.000	0.018(168)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC008764.4_LS002	chr19:16578409|16630468:-	AC008764.4	-	protein coding gene	no	ENST00000593991.5	0.124	0.005	0.633	0.007(67)	0.006(4)	0.005(92)	non tumor-specific	exon_skip	yes
AL080316.1_LS001	chr6:97711198|97712337:-	AL080316.1	-	lncRNA gene	no	ENST00000432438.1	0.669	0.000	0.580	0.006(55)	0(0)	0.001(9)	non tumor-specific	nAS	yes
UN_PPP1R13B_LS0062	chr14:103844718|103847299:-	PPP1R13B	protein phosphatase 1 regulatory subunit 13B	protein coding gene	no	.	0.411	0.391	0.000	0.001(13)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_SAMD1_LS0031	chr19:14090479|14090546:-	SAMD1	sterile alpha motif domain containing 1	protein coding gene	no	.	2.010	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01564_UP_LS0007	chr6:53616800|53621209:+	LINC01564	long intergenic non-protein coding RNA 1564	lncRNA gene	no	.	2.202	0.350	0.000	0.054(515)	0.048(34)	0(0)	non tumor-specific	nAS	no
SEPT7_LS028	chr7:35890793|35898248:+	SEPT7	septin 7	protein coding gene	no	ENST00000399034.7;ENST00000350320.10;ENST00000435235.6;ENST00000635175.1;ENST00000399035.7;ENST00000425198.1;ENST00000492940.1	262.663	165.799	294.409	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TMPRSS9_LS007	chr19:2398862|2399018:+	TMPRSS9	transmembrane serine protease 9	protein coding gene	no	ENST00000648592.1;ENST00000395264.3	9.175	0.363	0.775	0.038(368)	0.021(15)	0.1(1738)	non tumor-specific	nAS	yes
UN_MIR8071-2_UP_LS0012	chr14:105586939|105624605:+	MIR8071-2	microRNA 8071-2	small non-coding RNA gene	no	.	46.302	29.252	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPSAP19_LS0041	chr1:101786607|101786966:-	RPSAP19	ribosomal protein SA pseudogene 19	pseudogene	no	.	7.510	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC073869.1_LS009	chr2:131506442|131508537:+	AC073869.1	-	pseudogene	no	ENST00000415574.6;ENST00000438378.2	10.384	4.730	21.314	0.945(9055)	0.947(665)	0.977(16979)	non tumor-specific	nAS	yes
UN_AFF1_LS0027	chr4:86949704|86949862:+	AFF1	AF4/FMR2 family member 1	protein coding gene	yes	.	1.137	0.778	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
MUC4_LS119	chr3:195779593|195781274:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	1.407	0.783	0.000	0.001(5)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
C3_LS008	chr19:6679208|6679407:-	C3	complement C3	protein coding gene	no	ENST00000245907.10;ENST00000599899.5	1450.525	1976.105	375.760	0.98(9394)	0.997(700)	0.978(16996)	non tumor-specific	alt_3prime;alt_5prime	yes
FAM107B_LS013	chr10:14530515|14556016:-	FAM107B	family with sequence similarity 107 member B	protein coding gene	no	ENST00000478076.5	0.245	0.021	0.774	0.009(91)	0.051(36)	0.025(437)	non tumor-specific	exon_skip	yes
UN_PRPF40B_LS0012	chr12:49604538|49622675:-	PRPF40B	pre-mRNA processing factor 40 homolog B	protein coding gene	no	.	0.654	0.111	0.000	0.008(78)	0.014(10)	0(0)	non tumor-specific	nAS	no
CACNA2D3_LS004	chr3:54197507|54320442:+	CACNA2D3	calcium voltage-gated channel auxiliary subunit alpha2delta 3	protein coding gene	yes	ENST00000468658.1	0.019	0.000	0.632	0.001(10)	0(0)	0.009(165)	non tumor-specific	nAS	yes
DPP3_LS003	chr11:66480465|66482196:+	DPP3	dipeptidyl peptidase 3	protein coding gene	no	ENST00000532677.5;ENST00000530165.5;ENST00000544603.1	0.708	1.234	2.954	0.942(9025)	0.962(675)	0.908(15780)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01967_LS006	chr3:27997868|28010470:-	LINC01967	long intergenic non-protein coding RNA 1967	lncRNA gene	no	ENST00000437506.2	1.767	0.038	0.669	0.034(322)	0.007(5)	0.005(84)	non tumor-specific	nAS	yes
UN_SLC25A37_UP_LS0004	chr8:23490793|23492172:+	SLC25A37	solute carrier family 25 member 37	protein coding gene	no	.	1.040	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ABCA8_LS025	chr17:68903499|68906044:-	ABCA8	ATP binding cassette subfamily A member 8	protein coding gene	no	ENST00000269080.6;ENST00000430352.6;ENST00000586539.5;ENST00000541225.5;ENST00000589533.5;ENST00000615593.4	8.472	14.677	20.018	0.352(3370)	0.873(613)	0.925(16084)	non tumor-specific	nAS	yes
ITGB5_LS010	chr3:124773912|124796388:-	ITGB5	integrin subunit beta 5	protein coding gene	no	ENST00000296181.8;ENST00000481591.5;ENST00000488466.5	164.644	94.813	140.761	0.99(9481)	0.997(700)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FMNL1_LS0010	chr17:45239241|45240490:-	FMNL1	formin like 1	protein coding gene	no	.	2.061	0.155	0.000	0.059(568)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_YIPF3_LS0029	chr6:43512889|43513072:+	YIPF3	Yip1 domain family member 3	protein coding gene	no	.	1.831	0.031	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC020907.6_LS0042	chr19:35123509|35123534:-	AC020907.6	-	protein coding gene	no	.	10.517	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SYNE2_LS067	chr14:64093480|64097949:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000557060.1;ENST00000394768.6	2.483	6.016	10.047	0.729(6983)	0.869(610)	0.909(15808)	non tumor-specific	nAS	yes
PELI3_LS009	chr11:66468904|66471242:+	PELI3	pellino E3 ubiquitin protein ligase family member 3	protein coding gene	no	ENST00000320740.11;ENST00000524466.5;ENST00000527230.1	7.076	5.565	7.007	0.887(8496)	0.952(668)	0.96(16684)	non tumor-specific	exon_skip	yes
UN_IQCE_LS0055	chr7:2612537|2612685:+	IQCE	IQ motif containing E	protein coding gene	no	.	15.430	0.715	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
LRRN4CL_LS001	chr11:62688513|62689427:-	LRRN4CL	LRRN4 C-terminal like	protein coding gene	no	ENST00000317449.4	8.075	3.093	12.290	0.709(6797)	0.866(608)	0.854(14849)	non tumor-specific	nAS	yes
LINC02487_LS001	chr6:167681937|167682333:-	LINC02487	long intergenic non-protein coding RNA 2487	lncRNA gene	no	ENST00000400831.2;ENST00000644320.1	1.773	2.041	0.984	0.046(441)	0.058(41)	0.162(2812)	non tumor-specific	nAS	yes
RIPOR1_LS014	chr16:67539068|67539728:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	ENST00000379312.7;ENST00000566522.5;ENST00000042381.8;ENST00000540839.7;ENST00000422602.8;ENST00000565176.5;ENST00000428437.6;ENST00000569253.5;ENST00000566559.5;ENST00000566815.5;ENST00000561534.5	21.467	20.214	44.382	0.957(9172)	0.987(693)	0.979(17018)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AL359265.1_UP_LS0003	chr1:176229364|176230986:+	AL359265.1	-	pseudogene	no	.	1.580	0.207	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CALHM2_LS0003	chr10:103448035|103449387:-	CALHM2	calcium homeostasis modulator family member 2	protein coding gene	no	.	6.670	1.818	0.000	0.023(216)	0.019(13)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_KIAA1257_LS0100	chr3:129000670|129002051:-	KIAA1257	cilia and flagella associated protein 92 (putative)	protein coding gene	no	.	1.552	0.119	0.000	0.044(424)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
PRKACB_LS024	chr1:84202805|84204482:+	PRKACB	protein kinase cAMP-activated catalytic subunit beta	protein coding gene	no	ENST00000370688.7;ENST00000370684.5	2.309	1.822	2.004	0.762(7304)	0.855(600)	0.767(13327)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC153_LS013	chr11:119193885|119194923:-	CCDC153	coiled-coil domain containing 153	protein coding gene	no	ENST00000503566.6;ENST00000375140.7;ENST00000415318.2	2.672	1.604	2.126	0.638(6116)	0.728(511)	0.793(13776)	non tumor-specific	alt_3prime;exon_skip	yes
EFCAB14-AS1_LS004	chr1:46686763|46691874:+	EFCAB14-AS1	EFCAB14 antisense RNA 1	lncRNA gene	no	ENST00000442839.5;ENST00000418985.1	0.363	0.107	0.667	0.011(105)	0.017(12)	0.008(138)	non tumor-specific	nAS	yes
SLC24A3_LS017	chr20:19698680|19717528:+	SLC24A3	solute carrier family 24 member 3	protein coding gene	no	ENST00000328041.10;ENST00000613834.1	11.396	13.108	10.845	0.708(6783)	0.879(617)	0.909(15804)	non tumor-specific	nAS	yes
UN_ZNF432_LS0032	chr19:52049071|52049164:-	ZNF432	zinc finger protein 432	protein coding gene	no	.	1.805	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_PROC_UP_LS0003	chr2:127389185|127405815:+	PROC	protein C, inactivator of coagulation factors Va and VIIIa	protein coding gene	no	.	2.962	0.156	0.000	0.012(114)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RNF157_LS0028	chr17:76145533|76153125:+	RNF157	ring finger protein 157	protein coding gene	no	.	2.220	0.770	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
KCNE3_LS012	chr11:74462103|74467632:-	KCNE3	potassium voltage-gated channel subfamily E regulatory subunit 3	protein coding gene	no	ENST00000532569.5	0.092	0.038	0.689	0.08(771)	0.101(71)	0.018(315)	non tumor-specific	exon_skip	yes
CFB_LS014	chr6:31950147|31950286:+	CFB	complement factor B	protein coding gene	no	ENST00000425368.6;ENST00000452035.6;ENST00000467360.1	443.490	523.430	31.587	0.96(9193)	0.994(698)	0.959(16669)	non tumor-specific	intron_retention	yes
STMND1_LS006	chr6:17129243|17130594:+	STMND1	stathmin domain containing 1	protein coding gene	no	ENST00000536551.5;ENST00000354384.5;ENST00000366215.2	0.837	1.388	1.296	0.308(2955)	0.426(299)	0.187(3244)	non tumor-specific	exon_skip	yes
MMEL1_LS024	chr1:2603973|2604147:-	MMEL1	membrane metalloendopeptidase like 1	protein coding gene	no	ENST00000378412.7;ENST00000504800.5	5.039	1.230	1.034	0.069(665)	0.046(32)	0.36(6252)	non tumor-specific	nAS	yes
AC007834.1_LS001	chr12:109880728|109887793:+	AC007834.1	-	lncRNA gene	no	ENST00000446473.2	0.152	0.078	0.747	0.072(686)	0.085(60)	0.053(918)	non tumor-specific	nAS	yes
UN_KIAA1328_LS0006	chr18:36833388|36834320:+	KIAA1328	KIAA1328	protein coding gene	no	.	0.812	0.068	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
MBD5_LS051	chr2:148510135|148512870:+	MBD5	methyl-CpG binding domain protein 5	protein coding gene	no	ENST00000407073.5;ENST00000638043.2;ENST00000642680.1;ENST00000629878.2;ENST00000404807.5;ENST00000416015.2;ENST00000628572.2;ENST00000496893.3	7.277	4.986	9.535	0.837(8016)	0.889(624)	0.963(16744)	non tumor-specific	exon_skip	yes
UN_ARHGAP44_LS0014	chr17:12956746|12958723:+	ARHGAP44	Rho GTPase activating protein 44	protein coding gene	no	.	7.922	3.730	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	nAS	no
WDR47_LS002	chr1:108974754|108981733:-	WDR47	WD repeat domain 47	protein coding gene	no	ENST00000400794.7;ENST00000369962.7;ENST00000361054.7;ENST00000369965.8;ENST00000357672.7	17.080	17.553	17.862	0.955(9152)	0.973(683)	0.977(16983)	non tumor-specific	alt_3prime;exon_skip	yes
COPS8_LS017	chr2:237097802|237098958:+	COPS8	COP9 signalosome subunit 8	protein coding gene	no	ENST00000447464.1	0.465	0.241	1.987	0.529(5066)	0.536(376)	0.75(13034)	non tumor-specific	intron_retention	yes
FOLH1_LS041	chr11:49206874|49208292:-	FOLH1	folate hydrolase 1	protein coding gene	no	ENST00000340334.11;ENST00000533034.1;ENST00000529646.5;ENST00000340334.11;ENST00000533034.1;ENST00000529646.5	0.183	0.093	1.871	0.173(1659)	0.254(178)	0.179(3111)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AL391244.1_LS007	chr1:1400303|1400605:+	AL391244.1	-	lncRNA gene	no	ENST00000448629.5;ENST00000444362.2;ENST00000418833.2;ENST00000447725.2	29.414	15.250	14.176	0.973(9322)	0.973(683)	0.978(17001)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ZNF44_LS0057	chr19:12291250|12292502:-	ZNF44	zinc finger protein 44	protein coding gene	no	.	1.207	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC015849.5_LS001	chr17:35894323|35906168:-	AC015849.5	-	lncRNA gene	no	ENST00000604907.1	0.622	0.008	0.707	0.004(40)	0.004(3)	0.003(53)	non tumor-specific	nAS	yes
UN_LAPTM5_LS0052	chr1:30742549|30746815:-	LAPTM5	lysosomal protein transmembrane 5	protein coding gene	no	.	2.903	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
XPO1_LS042	chr2:61534678|61537562:-	XPO1	exportin 1	protein coding gene	no	ENST00000457483.5	1.060	0.639	1.657	0.664(6366)	0.766(538)	0.718(12473)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_CCDC88B_LS0031	chr11:64354044|64354122:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	.	4.189	0.504	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
WNK1_LS021	chr12:878361|879573:+	WNK1	WNK lysine deficient protein kinase 1	protein coding gene	no	ENST00000530271.6;ENST00000315939.10;ENST00000535698.1	0.650	0.807	3.322	0.666(6381)	0.754(529)	0.856(14871)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ITPRID2_LS035	chr2:181920662|181921948:+	ITPRID2	ITPR interacting domain containing 2	protein coding gene	no	ENST00000431877.6;ENST00000320370.11;ENST00000440623.5;ENST00000416081.5;ENST00000491720.5;ENST00000409136.5;ENST00000467172.2	35.294	29.932	60.341	0.989(9476)	0.996(699)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
SUN1_LS060	chr7:886650|887370:+	SUN1	Sad1 and UNC84 domain containing 1	protein coding gene	no	ENST00000457861.1	112.280	60.436	66.868	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_SULF2_LS0007	chr20:47659730|47661363:-	SULF2	sulfatase 2	protein coding gene	no	.	1.756	0.139	0.000	0.022(209)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SNX5_LS023	chr20:17954223|17955365:-	SNX5	sorting nexin 5	protein coding gene	no	ENST00000474883.5;ENST00000475716.5;ENST00000469704.1	0.199	0.139	1.719	0.731(7001)	0.682(479)	0.776(13487)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HMGN2P13_UP_LS0003	chr3:152856883|152870381:+	HMGN2P13	high mobility group nucleosomal binding domain 2 pseudogene 13	pseudogene	no	.	2.437	0.179	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CDX1_LS0002	chr5:150167321|150179016:+	CDX1	caudal type homeobox 1	protein coding gene	no	.	1.214	9.296	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	nAS	no
TMIE_LS002	chr3:46701580|46705790:+	TMIE	transmembrane inner ear	protein coding gene	no	ENST00000643606.1;ENST00000326431.3	0.564	0.182	1.677	0.265(2536)	0.363(255)	0.332(5764)	non tumor-specific	nAS	yes
UN_SLC17A9_LS0014	chr20:62960603|62962287:+	SLC17A9	solute carrier family 17 member 9	protein coding gene	no	.	13.014	0.143	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GCNT1_LS0075	chr9:76615237|76629192:-	GCNT1	glucosaminyl (N-acetyl) transferase 1	protein coding gene	no	.	2.591	0.543	0.000	0.009(84)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_NCAPH2_LS0011	chr22:50521609|50521745:+	NCAPH2	non-SMC condensin II complex subunit H2	protein coding gene	no	.	11.557	2.103	0.000	0.023(223)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ATXN2_LS049	chr12:111525316|111598784:-	ATXN2	ataxin 2	protein coding gene	no	ENST00000549455.1	0.054	0.029	0.717	0.228(2188)	0.212(149)	0.143(2479)	non tumor-specific	exon_skip	yes
ABCF1_LS027	chr6:30586548|30586641:+	ABCF1	ATP binding cassette subfamily F member 1	protein coding gene	no	ENST00000326195.12;ENST00000376545.7;ENST00000475993.1	142.479	74.625	79.929	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
AC092378.1_LS002	chr16:58734314|58755976:+	AC092378.1	-	lncRNA gene	no	ENST00000568134.5	0.336	0.129	0.822	0.031(300)	0.027(19)	0.103(1787)	non tumor-specific	nAS	yes
UN_GALNT18_LS0030	chr11:11432787|11448735:-	GALNT18	polypeptide N-acetylgalactosaminyltransferase 18	protein coding gene	no	.	4.273	0.694	0.000	0.006(56)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_HIST1H4PS1_UP_LS0011	chr6:27757738|27761725:+	HIST1H4PS1	H4 clustered histone 10, pseudogene	pseudogene	no	.	1.486	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AL049775.1_LS001	chr14:85525507|85528617:-	AL049775.1	-	lncRNA gene	no	ENST00000380722.2	0.451	0.233	1.072	0.16(1537)	0.211(148)	0.379(6592)	non tumor-specific	nAS	yes
UN_YLPM1_LS0048	chr14:74781715|74781893:-	YLPM1	YLP motif containing 1	protein coding gene	no	.	1.432	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STEAP1B_LS0049	chr7:22492729|22494772:-	STEAP1B	STEAP family member 1B	protein coding gene	no	.	2.808	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
PCGF3_LS007	chr4:731110|733672:+	PCGF3	polycomb group ring finger 3	protein coding gene	no	ENST00000362003.9;ENST00000400151.6;ENST00000482726.5;ENST00000427463.5;ENST00000470161.6;ENST00000430644.5;ENST00000484141.5;ENST00000433814.5	12.123	7.256	17.770	0.99(9485)	0.99(695)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL671277.1_UP_LS0008	chr6:29943509|30007560:-	AL671277.1	-	pseudogene	no	.	156.812	21.896	0.000	0.063(606)	0.031(22)	0(0)	non tumor-specific	nAS	no
KDM5B_LS009	chr1:202740812|202741367:-	KDM5B	lysine demethylase 5B	protein coding gene	yes	ENST00000367265.8;ENST00000648338.1;ENST00000649542.1;ENST00000647757.1;ENST00000649400.1;ENST00000367264.7;ENST00000650569.1;ENST00000648473.1;ENST00000648056.1;ENST00000649230.1;ENST00000650506.1;ENST00000649770.1;ENST00000648469.1;ENST00000650417.1;ENST00000235790.9;ENST00000650422.1	52.996	24.479	16.927	0.975(9337)	0.983(690)	0.977(16982)	non tumor-specific	alt_5prime	yes
SNX25_LS010	chr4:185310816|185320733:+	SNX25	sorting nexin 25	protein coding gene	no	ENST00000618785.4;ENST00000504273.5;ENST00000264694.12;ENST00000512853.5	13.323	13.146	8.665	0.924(8855)	0.983(690)	0.959(16667)	non tumor-specific	exon_skip	yes
TMTC1_LS014	chr12:29572218|29583407:-	TMTC1	transmembrane O-mannosyltransferase targeting cadherins 1	protein coding gene	no	ENST00000256062.9;ENST00000551659.5;ENST00000319685.12;ENST00000539277.5;ENST00000553189.5;ENST00000550354.1;ENST00000546582.1	10.108	11.473	13.210	0.721(6904)	0.923(648)	0.943(16399)	non tumor-specific	exon_skip	yes
UN_AGTPBP1_LS0020	chr9:85633037|85633137:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	.	2.076	0.044	0.000	0.011(102)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_AC090617.5_UP_LS0002	chr17:2048758|2049689:-	AC090617.5	-	lncRNA gene	no	.	3.198	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
RTF2_LS010	chr20:56473395|56474678:+	RTF2	replication termination factor 2	protein coding gene	no	ENST00000023939.8;ENST00000357348.9;ENST00000395881.7;ENST00000449062.1;ENST00000487211.5;ENST00000466260.1	177.967	129.657	124.420	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
GUK1_LS028	chr1:228144752|228145511:+	GUK1	guanylate kinase 1	protein coding gene	no	ENST00000366718.5	0.525	0.106	2.652	0.012(111)	0.05(35)	0.85(14781)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
NFKB1_LS019	chr4:102584820|102593425:+	NFKB1	nuclear factor kappa B subunit 1	protein coding gene	yes	ENST00000226574.8;ENST00000394820.8;ENST00000505458.5;ENST00000600343.5;ENST00000508584.1	38.117	28.011	25.719	0.972(9315)	0.99(695)	0.978(16998)	non tumor-specific	nAS	yes
UN_CYCSP6_UP_LS0048	chr2:79086879|79122050:-	CYCSP6	CYCS pseudogene 6	pseudogene	no	.	19.581	1.494	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AEBP2_LS002	chr12:19404216|19462510:+	AEBP2	AE binding protein 2	protein coding gene	no	ENST00000538425.5	0.192	0.001	0.607	0.371(3550)	0.41(288)	0.003(53)	non tumor-specific	alt_5prime	yes
UN_AC133919.2_LS0021	chr16:90156091|90159433:+	AC133919.2	-	lncRNA gene	no	.	1.044	0.076	0.000	0.011(107)	0.016(11)	0(0)	non tumor-specific	nAS	no
DNAAF1_LS014	chr16:84170356|84172260:+	DNAAF1	dynein axonemal assembly factor 1	protein coding gene	no	ENST00000570298.5;ENST00000563093.5;ENST00000378553.9;ENST00000563818.5	3.700	2.644	2.793	0.158(1517)	0.326(229)	0.369(6411)	non tumor-specific	nAS	yes
UN_ARFRP1_LS0052	chr20:63707097|63707661:-	ARFRP1	ADP ribosylation factor related protein 1	protein coding gene	no	.	1.439	0.102	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
LINC01120_LS002	chr2:131405447|131407463:+	LINC01120	long intergenic non-protein coding RNA 1120	lncRNA gene	no	ENST00000437751.1	1.571	0.010	0.731	0.021(197)	0.001(1)	0.022(391)	non tumor-specific	nAS	yes
UN_GLYR1_LS0034	chr16:4811802|4811889:-	GLYR1	glyoxylate reductase 1 homolog	protein coding gene	no	.	6.943	3.711	0.000	0.137(1312)	0.085(60)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RELN_LS014	chr7:103496768|103497820:-	RELN	reelin	protein coding gene	no	ENST00000428762.5;ENST00000343529.9;ENST00000424685.2	8.704	6.716	3.279	0.26(2488)	0.739(519)	0.747(12990)	non tumor-specific	nAS	yes
ALPK1_LS027	chr4:112427665|112429149:+	ALPK1	alpha kinase 1	protein coding gene	no	ENST00000504176.6;ENST00000458497.5;ENST00000177648.13;ENST00000509722.5;ENST00000505127.5;ENST00000504745.1	4.955	3.448	7.944	0.836(8011)	0.934(656)	0.933(16221)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NFATC2_LS004	chr20:51398730|51432067:-	NFATC2	nuclear factor of activated T cells 2	protein coding gene	yes	ENST00000371564.7;ENST00000610033.5;ENST00000414705.5;ENST00000609507.1	3.675	2.998	1.921	0.648(6208)	0.877(616)	0.718(12475)	non tumor-specific	exon_skip	yes
FTSJ1_LS034	chrX:48483341|48485736:+	FTSJ1	FtsJ RNA 2'-O-methyltransferase 1	protein coding gene	no	ENST00000489599.1	0.201	0.103	1.329	0.32(3065)	0.181(127)	0.654(11376)	non tumor-specific	alt_5prime;exon_skip	yes
MTOR_LS054	chr1:11247733|11247819:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	13.342	10.708	6.709	0.854(8184)	0.942(661)	0.949(16493)	non tumor-specific	exon_skip	yes
UN_PRKAG2_LS0059	chr7:151786541|151805815:-	PRKAG2	protein kinase AMP-activated non-catalytic subunit gamma 2	protein coding gene	no	.	1.047	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC122108.2_UP_LS0050	chr15:44832346|45068180:-	AC122108.2	-	lncRNA gene	no	.	1.177	0.145	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AP006748.1_UP_LS0008	chr21:41608810|41609754:-	AP006748.1	-	lncRNA gene	no	.	2.601	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
GOSR2_LS019	chr17:46935225|46938599:+	GOSR2	golgi SNAP receptor complex member 2	protein coding gene	no	ENST00000623037.2	4.640	2.031	0.712	0.026(246)	0.027(19)	0.214(3723)	non tumor-specific	nAS	yes
GARS_LS014	chr7:30614285|30615896:+	GARS	glycyl-tRNA synthetase 1	protein coding gene	no	ENST00000484093.1	0.138	0.086	0.669	0.903(8648)	0.902(633)	0.129(2234)	non tumor-specific	alt_3prime	yes
UN_ADGRA3_LS0011	chr4:22392690|22397991:-	ADGRA3	adhesion G protein-coupled receptor A3	protein coding gene	no	.	2.687	1.269	0.000	0.045(434)	0.036(25)	0(0)	non tumor-specific	exon_skip	no
UN_CXCR4_LS0008	chr2:136114974|136115130:+	CXCR4	C-X-C motif chemokine receptor 4	protein coding gene	yes	.	2.617	3.457	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM161B-AS1_LS014	chr5:88282866|88285741:+	TMEM161B-AS1	TMEM161B antisense RNA 1	lncRNA gene	no	ENST00000507736.1	2.299	1.742	4.431	0.912(8736)	0.937(658)	0.928(16136)	non tumor-specific	nAS	yes
UN_ATN1_LS0001	chr12:6925195|6933840:+	ATN1	atrophin 1	protein coding gene	no	.	0.987	0.121	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
NEMF_LS052	chr14:49849707|49851563:-	NEMF	nuclear export mediator factor	protein coding gene	no	ENST00000554162.1	0.046	0.000	0.625	0.046(441)	0.068(48)	0.004(78)	non tumor-specific	exon_skip	yes
UN_GSAP_LS0006	chr7:77317744|77320725:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	2.394	0.103	0.000	0.019(182)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ACAA2_LS007	chr18:49787361|49791470:-	ACAA2	acetyl-CoA acyltransferase 2	protein coding gene	no	ENST00000285093.14;ENST00000589432.5;ENST00000587994.5;ENST00000285093.14;ENST00000589432.5;ENST00000587994.5	235.423	359.612	117.159	0.995(9534)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC246787.2_UP_LS1196	chr14:105741777|105769398:+	AC246787.2	-	lncRNA gene	no	.	96.490	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALPK1_LS0031	chr4:112382552|112384127:+	ALPK1	alpha kinase 1	protein coding gene	no	.	0.894	0.169	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
CD163L1_LS014	chr12:7374923|7375281:-	CD163L1	CD163 molecule like 1	protein coding gene	no	ENST00000313599.7;ENST00000416109.2	4.062	3.944	1.810	0.357(3419)	0.496(348)	0.623(10828)	non tumor-specific	nAS	yes
UN_ACTN4_LS0039	chr19:38705773|38729760:-	ACTN4	actinin alpha 4	protein coding gene	yes	.	2.948	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
KPNA3_LS009	chr13:49719819|49721955:-	KPNA3	karyopherin subunit alpha 3	protein coding gene	no	ENST00000261667.7	34.735	24.541	16.871	0.948(9079)	0.987(693)	0.975(16944)	non tumor-specific	nAS	yes
UN_LYPD5_LS0014	chr19:43818762|43820540:-	LYPD5	LY6/PLAUR domain containing 5	protein coding gene	no	.	2.537	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RAB11FIP4_LS0035	chr17:31530237|31530326:+	RAB11FIP4	RAB11 family interacting protein 4	protein coding gene	no	.	0.521	0.014	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC004917.1_LS013	chr7:106760681|106770152:-	AC004917.1	-	lncRNA gene	no	ENST00000592441.1	2.122	0.000	0.665	0.003(27)	0(0)	0.039(680)	non tumor-specific	nAS	yes
ZZEF1_LS044	chr17:4076759|4076868:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	ENST00000381638.6;ENST00000574474.1	9.183	8.245	11.341	0.656(6281)	0.833(585)	0.965(16775)	non tumor-specific	nAS	yes
UN_PPFIA3_LS0005	chr19:49125921|49127859:+	PPFIA3	PTPRF interacting protein alpha 3	protein coding gene	no	.	0.930	0.246	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FGFR1_LS0071	chr8:38416060|38417250:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	.	3.802	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AL157392.5_LS0012	chr10:13621772|13630260:+	AL157392.5	-	protein coding gene	no	.	0.407	0.121	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
RASA4_LS004	chr7:102584338|102587635:-	RASA4	RAS p21 protein activator 4	protein coding gene	no	ENST00000262940.11;ENST00000461209.5;ENST00000449970.6;ENST00000522223.5;ENST00000462172.5	5.619	4.894	0.638	0.971(9299)	0.973(683)	0.001(24)	non tumor-specific	nAS	yes
SLC4A11_LS006	chr20:3229263|3229346:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	ENST00000380056.7;ENST00000380059.7;ENST00000642402.1;ENST00000644692.1;ENST00000644011.1;ENST00000647296.1;ENST00000474451.5;ENST00000539553.7	13.767	8.637	4.685	0.75(7184)	0.702(493)	0.82(14259)	non tumor-specific	alt_3prime	yes
SLC25A17_LS011	chr22:40779125|40792525:-	SLC25A17	solute carrier family 25 member 17	protein coding gene	no	ENST00000435456.6;ENST00000447566.5;ENST00000420970.5;ENST00000430221.5;ENST00000427084.5;ENST00000458600.5;ENST00000443810.5;ENST00000412879.5;ENST00000434193.5;ENST00000449676.5;ENST00000435456.6;ENST00000447566.5;ENST00000420970.5;ENST00000430221.5;ENST00000427084.5;ENST00000458600.5;ENST00000443810.5;ENST00000412879.5;ENST00000434193.5;ENST00000449676.5	34.101	20.714	15.037	0.991(9494)	0.996(699)	0.975(16943)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
C17orf53_LS008	chr17:44151044|44152637:+	C17orf53	homologous recombination factor with OB-fold	protein coding gene	no	ENST00000319977.8;ENST00000585683.5	5.029	0.754	1.376	0.703(6739)	0.325(228)	0.598(10403)	non tumor-specific	exon_skip	yes
SEPT9_LS062	chr17:77498765|77500407:+	SEPT9	septin 9	protein coding gene	yes	ENST00000590294.5	0.240	0.021	0.650	0.006(61)	0.003(2)	0.007(128)	non tumor-specific	intron_retention	yes
UN_RPL14_LS0004	chr3:40457958|40461423:-	RPL14	ribosomal protein L14	protein coding gene	no	.	4.157	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL671762.1_UP_LS0230	chr6:31816242|31828338:+	AL671762.1	-	lncRNA gene	no	.	61.593	10.934	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	nAS	no
AP002370.2_LS005	chr11:83693071|83693732:+	AP002370.2	-	lncRNA gene	no	ENST00000533669.5	2.046	0.000	0.704	0(4)	0(0)	0.037(642)	non tumor-specific	nAS	yes
UN_EIF2AK2_LS0026	chr2:37103920|37104212:-	EIF2AK2	eukaryotic translation initiation factor 2 alpha kinase 2	protein coding gene	no	.	7.181	0.232	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010149.2_UP_LS0005	chr2:230690331|230694551:-	AC010149.2	-	pseudogene	no	.	2.704	0.139	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
LUC7L3_LS019	chr17:50741246|50741657:+	LUC7L3	LUC7 like 3 pre-mRNA splicing factor	protein coding gene	no	ENST00000505658.5;ENST00000508045.5;ENST00000504563.6;ENST00000393227.6;ENST00000240304.5;ENST00000505619.5;ENST00000508482.5;ENST00000507200.5;ENST00000513025.2;ENST00000507503.1	108.937	53.218	211.103	0.996(9538)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
SEMA5B_LS001	chr3:122910301|122910840:-	SEMA5B	semaphorin 5B	protein coding gene	no	ENST00000648990.1;ENST00000451055.6;ENST00000616742.4;ENST00000195173.8;ENST00000451541.5;ENST00000357599.7;ENST00000475244.5;ENST00000650207.1	11.597	3.086	4.194	0.605(5797)	0.497(349)	0.793(13782)	non tumor-specific	exon_skip	yes
UN_TIMM10_UP_LS0002	chr11:57531012|57531190:-	TIMM10	translocase of inner mitochondrial membrane 10	protein coding gene	no	.	1.860	0.048	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TONSL_LS0060	chr8:144440210|144440316:-	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	.	4.426	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PITPNM2_LS0036	chr12:122995660|122996300:-	PITPNM2	phosphatidylinositol transfer protein membrane associated 2	protein coding gene	no	.	0.997	0.014	0.000	0.008(72)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
AC073869.1_LS018	chr2:131519666|131520097:+	AC073869.1	-	pseudogene	no	ENST00000438378.2	26.162	11.349	46.363	0.987(9457)	0.986(692)	0.979(17018)	non tumor-specific	nAS	yes
ZNF596_LS008	chr8:232694|240824:+	ZNF596	zinc finger protein 596	protein coding gene	no	ENST00000398612.2;ENST00000518414.5	0.243	0.185	0.850	0.341(3263)	0.472(331)	0.405(7042)	non tumor-specific	alt_5prime	yes
UN_PCAT14_LS0015	chr22:23544306|23546848:+	PCAT14	prostate cancer associated transcript 14	lncRNA gene	no	.	4.283	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01119_LS0007	chr2:46849162|46855923:+	LINC01119	long intergenic non-protein coding RNA 1119	lncRNA gene	no	.	0.717	0.178	0.000	0.004(42)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC007318.2_LS002	chr2:65207196|65222467:-	AC007318.2	-	pseudogene	no	ENST00000650256.1	0.868	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	yes
CD4_LS027	chr12:6818914|6819299:+	CD4	CD4 molecule	protein coding gene	yes	ENST00000011653.8;ENST00000437800.6	49.623	37.102	11.445	0.951(9110)	0.977(686)	0.948(16480)	non tumor-specific	nAS	yes
DRAIC_LS001	chr15:69463125|69464833:+	DRAIC	downregulated RNA in cancer, inhibitor of cell invasion and migration	lncRNA gene	no	ENST00000558633.5;ENST00000558309.5	0.294	0.094	0.842	0.008(76)	0.02(14)	0.081(1404)	non tumor-specific	nAS	yes
VDAC3_LS007	chr8:42395133|42396656:+	VDAC3	voltage dependent anion channel 3	protein coding gene	no	ENST00000518495.5	0.066	0.009	0.673	0.033(312)	0.028(20)	0.059(1025)	non tumor-specific	exon_skip	yes
SYT15_LS007	chr10:46583902|46584495:+	SYT15	synaptotagmin 15	protein coding gene	no	ENST00000374323.8;ENST00000374321.8;ENST00000503753.5;ENST00000374328.3	0.585	1.136	1.837	0.256(2450)	0.677(475)	0.618(10746)	non tumor-specific	nAS	yes
HLA-L_LS006	chr6:30261703|30262295:+	HLA-L	major histocompatibility complex, class I, L (pseudogene)	pseudogene	no	ENST00000482052.5;ENST00000463348.5	1.060	6.000	2.976	0.567(5435)	0.496(348)	0.865(15037)	non tumor-specific	nAS	yes
UN_AL031281.2_LS0007	chr1:22025984|22027414:+	AL031281.2	-	protein coding gene	no	.	3.581	0.424	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_NQO2_LS0041	chr6:3002286|3004495:+	NQO2	N-ribosyldihydronicotinamide:quinone reductase 2	protein coding gene	no	.	0.840	0.220	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
CPSF6_LS013	chr12:69257905|69258035:+	CPSF6	cleavage and polyadenylation specific factor 6	protein coding gene	no	ENST00000650046.1;ENST00000266679.8	3.504	2.971	4.098	0.943(9035)	0.957(672)	0.926(16094)	non tumor-specific	exon_skip;intron_retention	yes
UN_MARCO_LS0010	chr2:118970338|118974333:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	.	12.408	9.153	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ZBTB4_LS0054	chr17:7462450|7462511:+	ZBTB4	zinc finger and BTB domain containing 4	protein coding gene	yes	.	0.874	0.711	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
MSH3_LS023	chr5:80854316|80864813:+	MSH3	mutS homolog 3	protein coding gene	no	ENST00000265081.6	32.228	20.818	13.141	0.99(9484)	0.996(699)	0.977(16989)	non tumor-specific	alt_3prime;exon_skip	yes
ABLIM2_LS009	chr4:8008197|8009050:-	ABLIM2	actin binding LIM protein family member 2	protein coding gene	no	ENST00000361737.9;ENST00000341937.9;ENST00000361581.9;ENST00000505872.5;ENST00000510277.1	3.893	2.747	5.764	0.565(5412)	0.597(419)	0.89(15467)	non tumor-specific	alt_3prime	yes
UN_TRIM47_UP_LS0002	chr17:75889827|75931659:-	TRIM47	tripartite motif containing 47	protein coding gene	no	.	7.464	1.351	0.000	0.013(122)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IGKV2-4_UP_LS0024	chr2:88947596|88978936:-	IGKV2-4	immunoglobulin kappa variable 2-4 (pseudogene)	no	no	.	143.669	3.248	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MYH15_UP_LS0001	chr3:108529391|108549411:-	MYH15	myosin heavy chain 15	protein coding gene	no	.	1.271	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
EXO5_LS028	chr1:40509625|40514515:+	EXO5	exonuclease 5	protein coding gene	no	.;.	2.226	0.609	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PLCH1_LS0010	chr3:155485705|155488028:-	PLCH1	phospholipase C eta 1	protein coding gene	no	.	2.282	0.149	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_SRGAP1_LS0001	chr12:63844883|63848570:+	SRGAP1	SLIT-ROBO Rho GTPase activating protein 1	protein coding gene	no	.	1.299	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LINC-PINT_LS023	chr7:130984109|131107720:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000423414.5	0.099	0.042	1.146	0.078(752)	0.11(77)	0.552(9593)	non tumor-specific	nAS	yes
UN_VSIG10L_LS0023	chr19:51339142|51340433:-	VSIG10L	V-set and immunoglobulin domain containing 10 like	protein coding gene	no	.	1.044	0.078	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC6_LS015	chr14:37739155|37874460:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000533625.5	1.906	0.692	0.765	0.001(11)	0.001(1)	0.009(159)	non tumor-specific	nAS	yes
UN_CCDC88C_LS0019	chr14:91279914|91281457:-	CCDC88C	coiled-coil domain containing 88C	protein coding gene	no	.	0.589	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PLEKHH3_LS0026	chr17:42672447|42673176:-	PLEKHH3	pleckstrin homology, MyTH4 and FERM domain containing H3	protein coding gene	no	.	3.731	0.599	0.000	0.018(168)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_SMYD3_LS0006	chr1:245764149|245808507:-	SMYD3	SET and MYND domain containing 3	protein coding gene	no	.	4.254	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDKN2AIPNLP2_UP_LS0001	chr2:26827601|26832411:-	CDKN2AIPNLP2	CDKN2A interacting protein N-terminal like pseudogene 2	pseudogene	no	.	6.655	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
STRA6LP_LS067	chr9:97362441|97365673:+	STRA6LP	STRA6 like, pseudogene	lncRNA gene	no	ENST00000532526.5	1.070	0.000	1.006	0.004(42)	0.001(1)	0.324(5637)	non tumor-specific	exon_skip	yes
AC104986.2_LS001	chr8:98996966|99012869:-	AC104986.2	-	lncRNA gene	no	ENST00000521696.1	11.175	7.793	11.371	0.929(8899)	0.972(682)	0.963(16743)	non tumor-specific	nAS	yes
TMPRSS11A_LS015	chr4:67944637|67946450:-	TMPRSS11A	transmembrane serine protease 11A	protein coding gene	yes	ENST00000508048.5;ENST00000334830.11	8.390	44.301	23.913	0.101(963)	0.075(53)	0.067(1161)	non tumor-specific	alt_3prime;exon_skip	yes
LTBP3_LS037	chr11:65552982|65553164:-	LTBP3	latent transforming growth factor beta binding protein 3	protein coding gene	no	ENST00000322147.8;ENST00000301873.9;ENST00000528516.5;ENST00000530866.5;ENST00000526825.5;ENST00000524798.1	75.649	72.039	84.213	0.97(9294)	0.986(692)	0.978(16992)	non tumor-specific	alt_3prime;exon_skip	yes
TMBIM6_LS044	chr12:49759321|49761704:+	TMBIM6	transmembrane BAX inhibitor motif containing 6	protein coding gene	no	ENST00000552699.5;ENST00000267115.9;ENST00000549385.5;ENST00000423828.5;ENST00000552370.5;ENST00000395006.8;ENST00000547798.1;ENST00000547013.1;ENST00000550040.1;ENST00000549471.1	1437.046	1011.491	477.588	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CAPRIN1_LS003	chr11:34052162|34052421:+	CAPRIN1	cell cycle associated protein 1	protein coding gene	no	ENST00000534825.5	0.137	0.144	0.626	0.352(3369)	0.306(215)	0.039(681)	non tumor-specific	nAS	yes
HAPLN1_LS002	chr5:83644665|83652453:-	HAPLN1	hyaluronan and proteoglycan link protein 1	protein coding gene	no	ENST00000274341.8;ENST00000510978.5;ENST00000508307.5;ENST00000503117.1;ENST00000504713.5	3.845	1.878	1.736	0.526(5038)	0.319(224)	0.345(5989)	non tumor-specific	nAS	yes
UN_KIAA1328_LS0016	chr18:36885670|36897203:+	KIAA1328	KIAA1328	protein coding gene	no	.	3.010	0.311	0.000	0.019(181)	0.006(4)	0(0)	non tumor-specific	nAS	no
GYG2P1_LS006	chrY:12406937|12407193:-	GYG2P1	glycogenin 2 pseudogene 1	pseudogene	no	ENST00000493160.5;ENST00000382963.5	0.721	0.404	1.305	0.132(1264)	0.215(151)	0.239(4153)	non tumor-specific	nAS	yes
UN_TUBBP5_LS0031	chr9:138176206|138176884:+	TUBBP5	tubulin beta pseudogene 5	pseudogene	no	.	2.611	0.832	0.000	0.083(800)	0.057(40)	0(0)	non tumor-specific	nAS	no
UN_AC020687.1_LS0001	chr15:87433233|87501748:-	AC020687.1	-	lncRNA gene	no	.	2.502	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RIMBP2_LS0018	chr12:130432321|130434734:-	RIMBP2	RIMS binding protein 2	protein coding gene	no	.	5.206	0.488	0.000	0.049(469)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
GPSM2_LS014	chr1:108885578|108896864:+	GPSM2	G protein signaling modulator 2	protein coding gene	no	ENST00000406462.6;ENST00000645164.1;ENST00000435987.5;ENST00000642355.1;ENST00000264126.8;ENST00000643094.1;ENST00000435475.5;ENST00000446797.1	12.944	5.095	6.558	0.863(8269)	0.848(595)	0.88(15303)	non tumor-specific	exon_skip	yes
NDST1_LS029	chr5:150545486|150549678:+	NDST1	N-deacetylase and N-sulfotransferase 1	protein coding gene	no	ENST00000523767.5	0.472	0.286	1.298	0.493(4724)	0.507(356)	0.649(11281)	non tumor-specific	exon_skip	yes
EFCAB3_LS019	chr17:62406673|62407028:+	EFCAB3	EF-hand calcium binding domain 3	protein coding gene	no	ENST00000636041.1;ENST00000450662.7;ENST00000305286.7	6.611	0.000	0.774	0.001(12)	0(0)	0.005(85)	non tumor-specific	nAS	yes
QRFPR_LS007	chr4:121334619|121336807:-	QRFPR	pyroglutamylated RFamide peptide receptor	protein coding gene	no	ENST00000507331.5	0.284	0.003	0.714	0.05(481)	0.013(9)	0.013(220)	non tumor-specific	exon_skip	yes
CSPG4P10_LS011	chr15:82472445|82473311:+	CSPG4P10	chondroitin sulfate proteoglycan 4 pseudogene 10	pseudogene	no	ENST00000612093.1	5.222	2.078	1.039	0.251(2408)	0.182(128)	0.515(8947)	non tumor-specific	nAS	yes
UN_AC037450.1_UP_LS0004	chr8:87944054|87951827:+	AC037450.1	-	lncRNA gene	no	.	3.585	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
NOS3_LS024	chr7:151009267|151009398:+	NOS3	nitric oxide synthase 3	protein coding gene	no	ENST00000297494.7;ENST00000461406.5;ENST00000473057.1;ENST00000475017.1	8.159	7.232	10.668	0.924(8849)	0.97(681)	0.944(16413)	non tumor-specific	alt_3prime;exon_skip	yes
MYO1C_LS037	chr17:1484303|1485122:-	MYO1C	myosin IE	protein coding gene	no	ENST00000545534.6	0.041	0.142	0.684	0.076(731)	0.094(66)	0.158(2744)	non tumor-specific	nAS	yes
HLF_LS012	chr17:55284057|55288881:+	HLF	HLF transcription factor, PAR bZIP family member	protein coding gene	yes	ENST00000572234.2	0.257	0.025	0.712	0.002(16)	0.001(1)	0.015(267)	non tumor-specific	exon_skip	yes
SIGLEC20P_LS004	chr19:51186546|51187170:+	SIGLEC20P	sialic acid binding Ig like lectin 20, pseudogene	pseudogene	no	ENST00000595243.1	9.625	0.000	0.725	0.001(7)	0(0)	0.014(245)	non tumor-specific	nAS	yes
UBXN2A_LS006	chr2:23958355|23968919:+	UBXN2A	UBX domain protein 2A	protein coding gene	no	ENST00000446425.2	0.953	0.369	1.328	0.513(4915)	0.55(386)	0.697(12109)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RBM3_LS0017	chrX:48577682|48577816:-	RBM3	RNA binding motif protein 3	protein coding gene	yes	.	11.609	0.628	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAH7_LS005	chr2:195756285|195771660:-	DNAH7	dynein axonemal heavy chain 7	protein coding gene	no	ENST00000409063.5;ENST00000312428.10	4.562	2.595	1.869	0.294(2818)	0.46(323)	0.561(9744)	non tumor-specific	nAS	yes
SLC1A5_LS010	chr19:46784559|46787239:-	SLC1A5	solute carrier family 1 member 5	protein coding gene	no	ENST00000412532.6	1.252	0.947	1.114	0.633(6060)	0.732(514)	0.412(7154)	non tumor-specific	exon_skip	yes
UN_CHAF1A_LS0005	chr19:4405312|4405912:+	CHAF1A	chromatin assembly factor 1 subunit A	protein coding gene	no	.	1.025	0.061	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
TLE2_LS033	chr19:3019466|3019699:-	TLE2	TLE family member 2, transcriptional corepressor	protein coding gene	no	ENST00000426948.6;ENST00000591529.5;ENST00000590536.5;ENST00000587217.5;ENST00000590183.5;ENST00000592584.1	2.599	3.652	13.504	0.884(8466)	0.983(690)	0.946(16437)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PROC_LS017	chr2:127423408|127426085:+	PROC	protein C, inactivator of coagulation factors Va and VIIIa	protein coding gene	no	ENST00000234071.7;ENST00000442644.5;ENST00000409048.1;ENST00000464089.1	16.720	36.883	1.200	0.704(6746)	0.604(424)	0.289(5015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GOLGA3_LS0079	chr12:132795751|132795852:-	GOLGA3	golgin A3	protein coding gene	no	.	1.902	0.107	0.000	0.012(113)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
DNAH17_LS092	chr17:78567166|78569166:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6;ENST00000589793.1	2.033	0.000	0.657	0.001(12)	0(0)	0.014(250)	non tumor-specific	nAS	yes
PEX10_LS014	chr1:2406952|2408452:-	PEX10	peroxisomal biogenesis factor 10	protein coding gene	no	.;.;.	4.069	2.433	0.000	0.168(1605)	0.087(61)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TTC39C_LS0038	chr18:24083081|24088017:+	TTC39C	tetratricopeptide repeat domain 39C	protein coding gene	no	.	3.841	0.332	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL121977.1_UP_LS0012	chr6:82678039|82678852:-	AL121977.1	-	pseudogene	no	.	2.860	1.323	0.000	0.005(48)	0.009(6)	0(0)	non tumor-specific	nAS	no
SGK3_LS005	chr8:66712833|66737226:+	SGK3	serum/glucocorticoid regulated kinase family member 3	protein coding gene	no	ENST00000494528.2	0.164	0.061	0.624	0.115(1099)	0.199(140)	0.057(985)	non tumor-specific	nAS	yes
AC093162.2_LS001	chr2:85315554|85315627:+	AC093162.2	-	pseudogene	no	ENST00000501107.2	2.291	0.000	0.651	0(1)	0(0)	0.011(183)	non tumor-specific	nAS	yes
CAPZB_LS004	chr1:19339617|19342752:-	CAPZB	capping actin protein of muscle Z-line subunit beta	protein coding gene	no	ENST00000375142.5;ENST00000375142.5;ENST00000375142.5	19.006	34.830	34.700	0.838(8028)	0.922(647)	0.951(16529)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL391427.1_UP_LS0030	chr10:4961283|4965914:+	AL391427.1	-	lncRNA gene	no	.	1.715	0.016	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_FAM83H_LS0159	chr8:143726355|143726639:+	FAM83H	family with sequence similarity 83 member H	protein coding gene	no	.	0.920	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
PDCD7_LS003	chr15:65119463|65129032:-	PDCD7	programmed cell death 7	protein coding gene	no	ENST00000560313.2	0.545	0.309	1.440	0.796(7625)	0.823(578)	0.727(12643)	non tumor-specific	exon_skip	yes
UN_TPM1_LS0008	chr15:63048695|63048832:-	TPM1	tropomyosin 1	protein coding gene	no	.	3.029	0.352	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
GPAT3_LS012	chr4:83597515|83598051:+	GPAT3	glycerol-3-phosphate acyltransferase 3	protein coding gene	no	ENST00000611707.4;ENST00000395226.6;ENST00000264409.4	14.876	31.088	6.452	0.714(6842)	0.97(681)	0.915(15912)	non tumor-specific	exon_skip	yes
TP73-AS1_LS017	chr1:3741373|3742804:-	TP73-AS1	TP73 antisense RNA 1	pseudogene	no	ENST00000624948.1	0.038	0.028	0.762	0.11(1053)	0.189(133)	0.243(4216)	non tumor-specific	nAS	yes
AKT1_LS030	chr14:104780216|104786291:-	AKT1	AKT serine/threonine kinase 1	protein coding gene	yes	ENST00000555380.1	0.051	0.060	0.639	0.839(8039)	0.889(624)	0.075(1310)	non tumor-specific	nAS	yes
RPL28_LS012	chr19:55388048|55388243:+	RPL28	ribosomal protein L28	protein coding gene	no	ENST00000344063.6;ENST00000560881.5;ENST00000559463.5;ENST00000558131.1	2352.330	693.687	2577.827	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HUWE1_LS066	chrX:53602658|53603368:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12	34.006	23.136	15.563	0.825(7904)	0.933(655)	0.964(16751)	non tumor-specific	alt_3prime	yes
MUC16_LS032	chr19:8885313|8885645:-	MUC16	mucin 16, cell surface associated	protein coding gene	no	ENST00000397910.8;ENST00000596768.5;ENST00000601404.5;ENST00000599436.1	18.332	4.013	1.682	0.299(2863)	0.281(197)	0.197(3424)	non tumor-specific	mutex_exons	yes
FP700111.1_LS003	chr1:144917306|144917865:+	FP700111.1	-	lncRNA gene	no	ENST00000441760.2	0.718	0.000	0.518	0(4)	0(0)	0(4)	non tumor-specific	nAS	yes
RAE1_LS011	chr20:57366893|57367008:+	RAE1	ribonuclease A family member 7	protein coding gene	no	ENST00000395841.6;ENST00000371242.6;ENST00000527947.5;ENST00000492498.5;ENST00000395840.6	101.945	40.381	38.439	0.994(9524)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
MNT_LS004	chr17:2388049|2392704:-	MNT	MAX network transcriptional repressor	protein coding gene	yes	ENST00000572892.5	0.096	0.019	0.587	0.013(126)	0.004(3)	0.004(74)	non tumor-specific	nAS	yes
UN_FLNA_LS0352	chrX:154353641|154353682:+	FLNA	filamin A	protein coding gene	yes	.	6.881	0.196	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IGKC_LS0029	chr2:88857276|88857491:+	IGKC	immunoglobulin kappa constant	no	no	.	214.684	0.559	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC009005.1_LS002	chr19:567648|571440:-	AC009005.1	-	lncRNA gene	no	ENST00000588908.5	0.107	0.083	0.775	0.448(4297)	0.191(134)	0.162(2817)	non tumor-specific	nAS	yes
EPS8_LS013	chr12:15662099|15662193:-	EPS8	epidermal growth factor receptor pathway substrate 8	protein coding gene	yes	ENST00000542903.1	0.034	0.010	0.663	0.036(347)	0.02(14)	0.024(422)	non tumor-specific	intron_retention	yes
UN_ABCC10_LS0005	chr6:43427967|43433232:+	ABCC10	ATP binding cassette subfamily C member 10	protein coding gene	no	.	0.680	1.155	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
RAB3GAP1_LS009	chr2:135120918|135124165:+	RAB3GAP1	RAB3 GTPase activating protein catalytic subunit 1	protein coding gene	no	ENST00000264158.12;ENST00000442034.5;ENST00000487003.5;ENST00000539493.2	37.471	30.105	33.294	0.961(9207)	0.986(692)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
AC007663.1_LS002	chr22:20303800|20304836:+	AC007663.1	-	pseudogene	no	ENST00000438948.1	4.666	2.402	0.740	0.1(958)	0.08(56)	0.093(1618)	non tumor-specific	nAS	yes
KRT84_LS008	chr12:52383798|52385040:-	KRT84	keratin 84	protein coding gene	no	ENST00000257951.3	4.851	5.338	0.837	0.024(226)	0.017(12)	0.089(1544)	non tumor-specific	nAS	yes
FBXL5_LS011	chr4:15640883|15641524:-	FBXL5	F-box and leucine rich repeat protein 5	protein coding gene	no	ENST00000511441.5	0.080	0.493	0.783	0.493(4722)	0.631(443)	0.31(5394)	non tumor-specific	exon_skip	yes
POLE2_LS009	chr14:49647360|49650265:-	POLE2	DNA polymerase epsilon 2, accessory subunit	protein coding gene	no	ENST00000556937.5;ENST00000216367.9;ENST00000539565.6;ENST00000556584.5	7.156	1.657	3.006	0.873(8367)	0.625(439)	0.874(15185)	non tumor-specific	exon_skip	yes
EFS_LS007	chr14:23360281|23365008:-	EFS	embryonal Fyn-associated substrate	protein coding gene	no	ENST00000429593.6;ENST00000351354.3	1.672	0.935	9.055	0.676(6476)	0.848(595)	0.886(15406)	non tumor-specific	exon_skip	yes
UN_CUBN_LS0035	chr10:16972703|16985225:+	CUBN	cubilin	protein coding gene	no	.	2.753	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CHCHD2_LS001	chr7:56101861|56102867:-	CHCHD2	coiled-coil-helix-coiled-coil-helix domain containing 2	protein coding gene	no	ENST00000395422.3	630.165	296.738	719.731	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC9A5_LS001	chr16:67238456|67252542:+	SLC9A5	solute carrier family 9 member A5	protein coding gene	no	ENST00000564704.5	0.695	0.257	1.008	0.037(358)	0.021(15)	0.421(7325)	non tumor-specific	nAS	yes
MFRP_LS002	chr11:119340440|119340695:-	MFRP	membrane frizzled-related protein	protein coding gene	no	ENST00000619721.5	13.512	8.648	15.931	0.826(7913)	0.845(593)	0.926(16096)	non tumor-specific	nAS	yes
CDH11_LS014	chr16:64993034|64998562:-	CDH11	cadherin 11	protein coding gene	yes	ENST00000394156.7;ENST00000268603.8;ENST00000566827.5;ENST00000569128.1;ENST00000567934.5	41.012	22.480	17.978	0.904(8662)	0.92(646)	0.92(15983)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LPL_LS013	chr8:19956083|19960901:+	LPL	lipoprotein lipase	protein coding gene	no	ENST00000650478.1	1.355	0.329	0.000	0.001(6)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CEP70_LS0013	chr3:138504079|138505295:-	CEP70	centrosomal protein 70	protein coding gene	no	.	1.835	0.166	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HSPA1B_LS0026	chr6:31828547|31828632:-	HSPA1B	heat shock protein family A (Hsp70) member 1B	protein coding gene	no	.	5.558	0.142	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYBPC1_LS063	chr12:101682662|101685582:+	MYBPC1	myosin binding protein C1	protein coding gene	no	ENST00000452455.6;ENST00000452455.6	0.368	0.001	3.139	0.016(158)	0.023(16)	0.099(1714)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC01671_UP_LS0006	chr21:42621424|42623068:-	LINC01671	long intergenic non-protein coding RNA 1671	lncRNA gene	no	.	3.110	1.403	0.000	0.009(82)	0.028(20)	0(0)	non tumor-specific	nAS	no
AGBL4_LS004	chr1:48587166|48590833:-	AGBL4	ATP/GTP binding protein like 4	protein coding gene	no	ENST00000371839.5;ENST00000334103.11;ENST00000416121.5	1.237	1.176	1.357	0.151(1443)	0.318(223)	0.377(6549)	non tumor-specific	nAS	yes
UN_LINC01805_LS0005	chr2:64489406|64490020:-	LINC01805	long intergenic non-protein coding RNA 1805	lncRNA gene	no	.	4.369	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATP5F1AP3_UP_LS0001	chr16:72024440|72027939:-	ATP5F1AP3	ATP synthase F1 subunit alpha pseudogene 3	pseudogene	no	.	1.410	0.503	0.000	0.002(21)	0.013(9)	0(0)	non tumor-specific	nAS	no
CAPN1_LS050	chr11:65210872|65211260:+	CAPN1	calpain 1	protein coding gene	no	ENST00000533820.5;ENST00000533129.5;ENST00000524773.5;ENST00000279247.10;ENST00000527323.5;ENST00000530567.1;ENST00000533820.5;ENST00000533129.5;ENST00000524773.5;ENST00000279247.10;ENST00000527323.5;ENST00000530567.1	244.804	112.571	154.698	0.773(7403)	0.856(601)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC098820.1_LS0002	chr2:216487377|216488117:-	AC098820.1	-	lncRNA gene	no	.	2.898	0.174	0.000	0.014(138)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NT5DC2_LS0057	chr3:52533147|52533506:-	NT5DC2	5'-nucleotidase domain containing 2	protein coding gene	no	.	4.952	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZCCHC4_UP_LS0001	chr4:25156605|25279842:+	ZCCHC4	zinc finger CCHC-type containing 4	protein coding gene	no	.	15.759	0.118	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEK10_LS045	chr3:27346216|27352465:-	NEK10	NIMA related kinase 10	protein coding gene	no	ENST00000429845.6;ENST00000341435.9;ENST00000491627.1;ENST00000435750.1	1.224	0.880	0.915	0.092(884)	0.322(226)	0.309(5374)	non tumor-specific	nAS	yes
SNTG1_LS022	chr8:50502880|50530177:+	SNTG1	syntrophin gamma 1	protein coding gene	no	ENST00000518864.5;ENST00000642720.1;ENST00000642164.1;ENST00000642286.1;ENST00000643999.1;ENST00000522124.5;ENST00000647073.1;ENST00000643809.1;ENST00000644469.1;ENST00000517473.5;ENST00000642826.1;ENST00000643740.1;ENST00000647273.1;ENST00000520825.5	6.878	0.591	3.746	0.087(835)	0.01(7)	0.193(3360)	non tumor-specific	nAS	yes
UN_KIAA1191_LS0034	chr5:176347777|176347958:+	KIAA1191	KIAA1191	protein coding gene	no	.	1.576	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC108448.1_LS001	chr11:3189618|3189710:+	AC108448.1	-	lncRNA gene	no	ENST00000455154.1	0.662	0.034	1.705	0.02(187)	0.009(6)	0.032(558)	non tumor-specific	nAS	yes
UN_PODXL_LS0035	chr7:131507658|131508951:-	PODXL	podocalyxin like	protein coding gene	no	.	3.034	1.610	0.000	0.007(67)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NTNG2_LS0005	chr9:132162239|132162337:+	NTNG2	netrin G2	protein coding gene	no	.	4.129	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NLRP10_LS002	chr11:7963540|7965246:-	NLRP10	NLR family pyrin domain containing 10	protein coding gene	no	ENST00000526590.1	0.360	0.034	1.782	0.032(303)	0.011(8)	0.089(1554)	non tumor-specific	nAS	yes
CYP4F25P_LS001	chr9:64465758|64466086:+	CYP4F25P	cytochrome P450 family 4 subfamily F member 25, pseudogene	pseudogene	no	ENST00000446871.1	0.359	0.054	0.730	0.021(199)	0.007(5)	0.021(368)	non tumor-specific	nAS	yes
UN_DAGLA_LS0022	chr11:61720250|61722859:+	DAGLA	diacylglycerol lipase alpha	protein coding gene	no	.	1.192	0.393	0.000	0.025(240)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_AC012668.3_LS0009	chr2:215613743|215624143:-	AC012668.3	-	lncRNA gene	no	.	1.937	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CNOT7_LS007	chr8:17237373|17242992:-	CNOT7	CCR4-NOT transcription complex subunit 7	protein coding gene	no	ENST00000361272.8;ENST00000523917.5;ENST00000519954.5;ENST00000519918.5;ENST00000524358.5	98.603	64.051	37.362	0.995(9534)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
DDB1_LS022	chr11:61316393|61316492:-	DDB1	damage specific DNA binding protein 1	protein coding gene	no	ENST00000301764.11;ENST00000540166.5;ENST00000537877.5;ENST00000535967.5;ENST00000539739.5;ENST00000540784.5;ENST00000545930.5;ENST00000535174.5	167.895	123.117	103.035	0.99(9488)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
KHSRP_LS028	chr19:6421688|6422340:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	ENST00000398148.7;ENST00000619396.4;ENST00000599395.5;ENST00000595548.5;ENST00000595258.1;ENST00000597704.1	148.262	73.951	71.244	0.993(9517)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
RAP1GAP2_LS030	chr17:3020595|3026008:+	RAP1GAP2	RAP1 GTPase activating protein 2	protein coding gene	no	ENST00000637138.1;ENST00000540393.6;ENST00000254695.12;ENST00000366401.8;ENST00000542807.1;ENST00000575979.1	9.424	10.406	8.765	0.885(8479)	0.903(634)	0.948(16477)	non tumor-specific	exon_skip	yes
AURKAIP1_LS003	chr1:1374445|1375154:-	AURKAIP1	aurora kinase A interacting protein 1	protein coding gene	no	.;.;.	2.881	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SIDT2_LS009	chr11:117181971|117182519:+	SIDT2	SID1 transmembrane family member 2	protein coding gene	no	ENST00000530948.5	0.683	0.667	0.782	0.572(5483)	0.745(523)	0.317(5515)	non tumor-specific	exon_skip	yes
UN_CACNB4_LS0003	chr2:151842088|151852909:-	CACNB4	calcium voltage-gated channel auxiliary subunit beta 4	protein coding gene	no	.	3.196	0.242	0.000	0.008(75)	0.033(23)	0(0)	non tumor-specific	nAS	no
TMEM167A_LS001	chr5:83057154|83061877:-	TMEM167A	transmembrane protein 167A	protein coding gene	no	ENST00000502346.1;ENST00000511450.5;ENST00000511118.1;ENST00000504622.5;ENST00000503892.1	96.672	55.595	64.289	0.94(9005)	0.943(662)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_SNN_LS0029	chr16:11678025|11678206:-	SNN	stannin	protein coding gene	no	.	1.289	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TCTN3_LS010	chr10:95684624|95685556:-	TCTN3	tectonic family member 3	protein coding gene	no	ENST00000614499.4;ENST00000371217.9;ENST00000265993.13;ENST00000371209.5	82.694	56.022	29.476	0.992(9505)	0.997(700)	0.978(17001)	non tumor-specific	exon_skip	yes
UN_CALML3-AS1_LS0004	chr10:5522129|5524282:-	CALML3-AS1	CALML3 antisense RNA 1	lncRNA gene	no	.	1.802	0.697	0.000	0.015(146)	0.011(8)	0(0)	non tumor-specific	nAS	no
SCNM1_LS004	chr1:151166252|151166476:+	SCNM1	sodium channel modifier 1	protein coding gene	no	.;.	3.707	0.217	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
SNTG2_LS022	chr2:1239776|1247327:+	SNTG2	syntrophin gamma 2	protein coding gene	no	ENST00000308624.9;ENST00000407292.1	2.947	1.148	2.314	0.039(373)	0.125(88)	0.701(12178)	non tumor-specific	exon_skip	yes
STIM2_LS009	chr4:26995490|26999232:+	STIM2	stromal interaction molecule 2	protein coding gene	no	ENST00000494628.6;ENST00000463501.5;ENST00000467087.5;ENST00000467011.5;ENST00000465503.5;ENST00000639640.1;ENST00000639195.1	18.321	12.834	11.128	0.935(8960)	0.973(683)	0.974(16931)	non tumor-specific	exon_skip	yes
UN_AC097534.2_LS0005	chr4:173369610|173369910:-	AC097534.2	-	lncRNA gene	no	.	1.746	0.723	0.000	0.014(135)	0.03(21)	0(0)	non tumor-specific	nAS	no
CD55_LS017	chr1:207337409|207359546:+	CD55	CD55 molecule (Cromer blood group)	protein coding gene	no	.;.	58.711	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SUSD4_LS013	chr1:223268675|223363278:-	SUSD4	sushi domain containing 4	protein coding gene	no	ENST00000484758.6	0.334	0.387	0.787	0.209(2002)	0.285(200)	0.085(1482)	non tumor-specific	exon_skip	yes
UN_DPY30_LS0006	chr2:31883476|31891991:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	.	14.256	3.496	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TULP4_LS0061	chr6:158452268|158461565:+	TULP4	TUB like protein 4	protein coding gene	no	.	2.689	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NPFFR2_LS006	chr4:72128919|72138040:+	NPFFR2	neuropeptide FF receptor 2	protein coding gene	no	ENST00000308744.10;ENST00000395999.5;ENST00000358749.3	2.774	0.423	0.787	0.105(1005)	0.091(64)	0.087(1513)	non tumor-specific	exon_skip	yes
AL732372.2_LS016	chr1:497299|498073:-	AL732372.2	-	pseudogene	no	ENST00000599771.6;ENST00000641579.1	2.498	1.188	1.032	0.854(8186)	0.832(584)	0.39(6779)	non tumor-specific	nAS	yes
UN_MAP4K4_LS0040	chr2:101877146|101882559:+	MAP4K4	mitogen-activated protein kinase kinase kinase kinase 4	protein coding gene	no	.	12.842	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP001317.1_UP_LS0004	chr11:98489259|98489702:-	AP001317.1	-	pseudogene	no	.	4.056	0.453	0.000	0.007(66)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RN7SL831P_UP_LS0023	chr1:96521421|96524020:+	RN7SL831P	RNA, 7SL, cytoplasmic 831, pseudogene	small non-coding RNA gene	no	.	3.712	1.284	0.000	0.004(39)	0.028(20)	0(0)	non tumor-specific	nAS	no
ZFP2_LS009	chr5:178915771|178916565:+	ZFP2	ZFP2 zinc finger protein	protein coding gene	no	ENST00000523286.1	0.169	0.042	0.669	0.019(181)	0.043(30)	0.025(442)	non tumor-specific	exon_skip	yes
VWDE_LS003	chr7:12336236|12336988:-	VWDE	von Willebrand factor D and EGF domains	protein coding gene	no	ENST00000275358.7;ENST00000521169.5;ENST00000452576.6;ENST00000614403.4	7.658	1.766	1.636	0.278(2667)	0.298(209)	0.449(7810)	non tumor-specific	exon_skip	yes
ABI3BP_LS053	chr3:100833157|100834684:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000471714.5;ENST00000495591.5;ENST00000487012.5;ENST00000466947.5;ENST00000533795.5;ENST00000495063.5;ENST00000528490.5;ENST00000487249.1;ENST00000534413.5	4.151	8.830	16.541	0.568(5438)	0.905(635)	0.863(14998)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PLEKHS1_LS0167	chr10:113781562|113781695:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	4.125	0.082	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM123_LS007	chr11:102448375|102448812:-	TMEM123	transmembrane protein 123	protein coding gene	no	ENST00000526676.1	0.016	0.031	0.684	0.21(2010)	0.248(174)	0.147(2547)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DOT1L_LS0034	chr19:2220222|2222185:+	DOT1L	DOT1 like histone lysine methyltransferase	protein coding gene	no	.	1.071	0.436	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LINC02101_UP_LS0002	chr5:58152020|58153172:-	LINC02101	long intergenic non-protein coding RNA 2101	lncRNA gene	no	.	4.165	0.166	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC00587_LS0004	chr9:102553950|102652566:-	LINC00587	long intergenic non-protein coding RNA 587	lncRNA gene	no	.	7.154	0.000	0.000	0.027(262)	0(0)	0(0)	non tumor-specific	nAS	no
STK32A_LS002	chr5:147239686|147275958:+	STK32A	serine/threonine kinase 32A	protein coding gene	no	ENST00000648628.1	0.565	0.040	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	exon_skip	yes
UN_ADAR_LS0016	chr1:154582659|154582767:+	ADAR	adenosine deaminase RNA specific	protein coding gene	no	.	3.802	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CASTOR3_LS011	chr7:100211994|100222597:-	CASTOR3	CASTOR family member 3	protein coding gene	no	ENST00000435519.6	0.531	0.478	1.081	0.183(1756)	0.179(126)	0.266(4629)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_GRIN2C_LS0010	chr17:74850368|74850556:-	GRIN2C	glutamate ionotropic receptor NMDA type subunit 2C	protein coding gene	no	.	7.142	0.913	0.000	0.019(186)	0.034(24)	0(0)	non tumor-specific	alt_3prime	no
UN_AC127381.2_UP_LS0004	chr15:19847860|19871535:-	AC127381.2	-	pseudogene	no	.	6.176	0.160	0.000	0.014(136)	0.003(2)	0(0)	non tumor-specific	nAS	no
NUP133_LS008	chr1:229463676|229464624:-	NUP133	nucleoporin 133	protein coding gene	no	ENST00000261396.5	66.066	35.647	41.258	0.993(9515)	0.997(700)	0.979(17010)	non tumor-specific	exon_skip	yes
DGCR6_LS014	chr22:18910098|18910172:+	DGCR6	DiGeorge syndrome critical region gene 6	protein coding gene	no	ENST00000427407.5	0.598	0.382	1.641	0.689(6597)	0.744(522)	0.639(11113)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CSRP1_LS0052	chr1:201483786|201484638:+	CSRP1	cysteine and glycine rich protein 1	protein coding gene	no	.	2.900	3.184	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHD7_LS0021	chr8:60809384|60816387:+	CHD7	chromodomain helicase DNA binding protein 7	protein coding gene	no	.	1.095	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF25_LS0014	chr2:218666056|218666159:-	RNF25	ring finger protein 25	protein coding gene	no	.	5.427	0.326	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC073218.2_LS0004	chr2:34694298|34696240:-	AC073218.2	-	lncRNA gene	no	.	1.559	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RALGAPA2_LS019	chr20:20531795|20535745:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	ENST00000430436.5;ENST00000202677.11	11.430	9.010	7.979	0.801(7677)	0.949(666)	0.956(16615)	non tumor-specific	exon_skip	yes
RRM1_LS008	chr11:4105691|4106046:+	RRM1	ribonucleotide reductase catalytic subunit M1	protein coding gene	no	ENST00000532170.5	0.039	0.417	0.650	0.088(847)	0.095(67)	0.105(1825)	non tumor-specific	exon_skip	yes
UN_AC087857.1_LS0006	chr3:5963515|6073257:+	AC087857.1	-	lncRNA gene	no	.	3.063	0.473	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CBWD5_LS0016	chr9:65703014|65703880:+	CBWD5	COBW domain containing 5	protein coding gene	no	.	2.372	0.385	0.000	0.021(197)	0.017(12)	0(0)	non tumor-specific	nAS	no
NUTM2A_LS001	chr10:87226212|87228263:+	NUTM2A	NUT family member 2A	protein coding gene	no	ENST00000381707.6;ENST00000381689.4	1.062	1.082	1.123	0.696(6669)	0.811(569)	0.567(9847)	non tumor-specific	nAS	yes
UN_CD96_LS0087	chr3:111663163|111665527:+	CD96	CD96 molecule	protein coding gene	no	.	1.906	0.072	0.000	0.011(109)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DLEU1_LS033	chr13:50415202|50527866:+	DLEU1	deleted in lymphocytic leukemia 1	lncRNA gene	yes	ENST00000470593.5	0.321	0.012	0.641	0.041(394)	0.006(4)	0.002(42)	non tumor-specific	exon_skip	yes
UN_HOXD9_UP_LS0005	chr2:176106725|176118954:+	HOXD9	homeobox D9	protein coding gene	yes	.	2.565	0.224	0.000	0.01(97)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM91A1_LS006	chr8:123778092|123778659:+	FAM91A1	family with sequence similarity 91 member A1	protein coding gene	no	ENST00000521166.5;ENST00000334705.11;ENST00000519721.5	26.449	13.198	9.664	0.898(8602)	0.967(679)	0.962(16726)	non tumor-specific	nAS	yes
UN_CBX5_LS0042	chr12:54246212|54252041:-	CBX5	chromobox 5	protein coding gene	yes	.	8.348	1.622	0.000	0.034(323)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC084128.1_LS003	chr8:86200222|86212195:+	AC084128.1	-	lncRNA gene	no	ENST00000523112.1	2.317	0.000	0.680	0.003(29)	0(0)	0.005(83)	non tumor-specific	nAS	yes
SLC7A2_LS003	chr8:17497237|17543318:+	SLC7A2	solute carrier family 7 member 2	protein coding gene	no	ENST00000522656.5	0.801	0.915	2.150	0.42(4028)	0.775(544)	0.637(11073)	non tumor-specific	exon_skip	yes
UN_AL133163.1_UP_LS0010	chr14:35401486|35401610:-	AL133163.1	-	pseudogene	no	.	2.798	1.694	0.000	0.035(332)	0.09(63)	0(0)	non tumor-specific	nAS	no
ATG2A_LS025	chr11:64906815|64907255:-	ATG2A	autophagy related 2A	protein coding gene	no	ENST00000418259.5;ENST00000377264.7	17.593	11.523	14.812	0.945(9058)	0.987(693)	0.977(16981)	non tumor-specific	nAS	yes
UN_WDR27_LS0083	chr6:169664286|169664770:-	WDR27	WD repeat domain 27	protein coding gene	no	.	1.983	0.263	0.000	0.018(175)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CIRBP_LS033	chr19:1270882|1270928:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	ENST00000588230.5	2.204	2.297	55.501	0.587(5626)	0.697(489)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
NF1P1_LS008	chr15:20933120|20934509:-	NF1P1	neurofibromin 1 pseudogene 1	pseudogene	no	ENST00000604105.1	4.895	0.000	0.584	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_AC021683.3_LS0014	chr17:77530939|77533178:+	AC021683.3	-	lncRNA gene	no	.	3.048	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
ADAMTS9_LS015	chr3:64594434|64596830:-	ADAMTS9	ADAM metallopeptidase with thrombospondin type 1 motif 9	protein coding gene	yes	ENST00000498707.5;ENST00000295903.8;ENST00000481060.2;ENST00000482490.5	9.578	7.375	10.438	0.776(7432)	0.862(605)	0.894(15545)	non tumor-specific	exon_skip	yes
UN_DHX29_LS0005	chr5:55261444|55262630:-	DHX29	DExH-box helicase 29	protein coding gene	no	.	6.678	1.073	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_LYRM4_LS0023	chr6:5189333|5189424:+	LYRM4	LYR motif containing 4	protein coding gene	no	.	23.414	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
FKRP_LS003	chr19:46746090|46747579:+	FKRP	fukutin related protein	protein coding gene	no	ENST00000593800.5;ENST00000597403.5	0.154	0.042	0.641	0.038(368)	0.033(23)	0.023(404)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NUPR1_LS0003	chr16:28533332|28534326:-	NUPR1	nuclear protein 1, transcriptional regulator	protein coding gene	yes	.	0.651	0.228	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
ADAMTS16_LS008	chr5:5191790|5200132:+	ADAMTS16	ADAM metallopeptidase with thrombospondin type 1 motif 16	protein coding gene	no	ENST00000511368.5;ENST00000274181.7;ENST00000433402.2	4.953	4.759	1.370	0.208(1992)	0.349(245)	0.302(5251)	non tumor-specific	exon_skip	yes
UN_TTC6_LS0036	chr14:37714796|37722100:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	.	2.622	0.371	0.000	0.006(53)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
CDC25C_LS005	chr5:138287267|138289501:-	CDC25C	cell division cycle 25C	protein coding gene	yes	ENST00000323760.10;ENST00000348983.7;ENST00000415130.6;ENST00000648466.1;ENST00000513970.5;ENST00000514555.5	11.195	1.879	1.318	0.739(7080)	0.209(147)	0.356(6183)	non tumor-specific	alt_5prime;exon_skip	yes
PRMT2_LS023	chr21:46649739|46663383:+	PRMT2	protein arginine methyltransferase 2	protein coding gene	no	ENST00000458387.6	0.440	0.224	1.198	0.377(3613)	0.252(177)	0.512(8898)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
RSPH10B2_LS031	chr7:6789759|6796568:+	RSPH10B2	radial spoke head 10 homolog B2	protein coding gene	no	ENST00000463354.6	0.357	0.305	0.870	0(4)	0.009(6)	0.028(492)	non tumor-specific	exon_skip	yes
DGKK_LS008	chrX:50378691|50379627:-	DGKK	diacylglycerol kinase kappa	protein coding gene	no	ENST00000611977.1	5.442	0.105	1.842	0.048(458)	0.003(2)	0.072(1248)	non tumor-specific	nAS	yes
UN_CDCA7L_LS0018	chr7:21916894|21943405:-	CDCA7L	cell division cycle associated 7 like	protein coding gene	no	.	0.834	0.011	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ACSBG1_LS007	chr15:78180936|78181969:-	ACSBG1	acyl-CoA synthetase bubblegum family member 1	protein coding gene	no	ENST00000258873.8;ENST00000560124.5;ENST00000560817.5;ENST00000559707.5;ENST00000558728.1	5.459	5.982	7.566	0.174(1664)	0.174(122)	0.443(7705)	non tumor-specific	nAS	yes
UN_RAP2C_LS0002	chrX:132205587|132207422:-	RAP2C	RAP2C, member of RAS oncogene family	protein coding gene	no	.	3.851	0.284	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
FAM138A_LS001	chr1:35174|35277:-	FAM138A	family with sequence similarity 138 member A	lncRNA gene	no	ENST00000417324.1	0.037	0.005	0.888	0.015(142)	0.028(20)	0(4)	non tumor-specific	nAS	yes
UN_PUM3_LS0034	chr9:2807880|2810344:-	PUM3	pumilio RNA binding family member 3	protein coding gene	no	.	5.401	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ABCA5_LS013	chr17:69255634|69255733:-	ABCA5	ATP binding cassette subfamily A member 5	protein coding gene	no	ENST00000392676.7;ENST00000588877.5;ENST00000591234.5;ENST00000586995.5;ENST00000586811.1	16.024	16.442	29.118	0.91(8720)	0.983(690)	0.976(16959)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01578_LS005	chr15:92883619|92883744:+	LINC01578	CHD2 adjacent suppressive regulatory RNA	lncRNA gene	no	ENST00000554894.5	0.080	0.032	0.828	0.24(2295)	0.255(179)	0.371(6456)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CAPN8_LS036	chr1:223622900|223625805:-	CAPN8	calpain 8	protein coding gene	no	ENST00000366872.9;ENST00000419193.6;ENST00000366873.6;ENST00000467384.6;ENST00000465098.1;ENST00000366872.9;ENST00000419193.6;ENST00000366873.6;ENST00000467384.6;ENST00000465098.1;ENST00000366872.9;ENST00000419193.6;ENST00000366873.6;ENST00000467384.6;ENST00000465098.1	15.488	13.003	1.533	0.392(3751)	0.584(410)	0.389(6753)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_MIATNB_LS0061	chr22:26773394|26773444:-	MIATNB	MIAT neighbor	lncRNA gene	no	.	2.035	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RCOR2_UP_LS0001	chr11:63919855|63920104:-	RCOR2	REST corepressor 2	protein coding gene	no	.	1.062	0.097	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
HPSE_LS013	chr4:83310890|83319344:-	HPSE	heparanase	protein coding gene	no	ENST00000513463.1	0.887	0.394	0.759	0.186(1782)	0.181(127)	0.148(2567)	non tumor-specific	exon_skip	yes
UN_ZNF106_LS0009	chr15:42415880|42416010:+	ZNF106	zinc finger protein 106	protein coding gene	no	.	1.232	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTMA_LS0071	chr2:231712516|231712843:+	PTMA	prothymosin alpha	protein coding gene	yes	.	422.589	6.930	0.000	0.01(97)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
AGL_LS026	chr1:99884703|99887978:+	AGL	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein coding gene	no	ENST00000361915.7;ENST00000294724.8;ENST00000370165.7;ENST00000370163.7;ENST00000361302.7;ENST00000370161.6;ENST00000637337.1	11.909	13.089	6.660	0.862(8258)	0.969(680)	0.931(16190)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPSAP68_UP_LS0382	chr21:8399718|8443789:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	1051.196	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA4_LS0015	chr19:48856368|48865800:+	PLEKHA4	pleckstrin homology domain containing A4	protein coding gene	no	.	1.852	0.722	0.000	0.011(103)	0.003(2)	0(0)	non tumor-specific	nAS	no
RANBP17_LS011	chr5:170916584|170918713:+	RANBP17	RAN binding protein 17	protein coding gene	no	ENST00000523189.5;ENST00000389118.8;ENST00000519256.5;ENST00000522533.5;ENST00000522066.5;ENST00000519949.5;ENST00000520864.5	0.503	0.427	1.120	0.359(3435)	0.285(200)	0.505(8779)	non tumor-specific	exon_skip	yes
UN_UBALD2_UP_LS0010	chr17:76134797|76153125:+	UBALD2	UBA like domain containing 2	protein coding gene	no	.	1.768	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RETREG2_LS0003	chr2:219176847|219178121:-	RETREG2	reticulophagy regulator family member 2	protein coding gene	no	.	3.263	1.984	0.000	0.573(5491)	0.691(485)	0(0)	non tumor-specific	nAS	no
COL1A1_LS006	chr17:50186922|50196155:-	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.;.	2064.618	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AC004980.1_UP_LS0003	chr7:76522077|76524517:+	AC004980.1	-	pseudogene	no	.	2.802	0.313	0.000	0.008(81)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
MATK_LS008	chr19:3781672|3782818:-	MATK	megakaryocyte-associated tyrosine kinase	protein coding gene	no	ENST00000588983.5	0.826	0.396	0.756	0.028(271)	0.023(16)	0.018(307)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_FUT3_LS0024	chr19:5843475|5843556:+	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	.	3.366	1.126	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYH7_LS036	chr14:23432795|23433084:-	MYH7	myosin heavy chain 7	protein coding gene	no	ENST00000355349.3	20.896	367.440	1.498	0.028(269)	0.064(45)	0.552(9595)	non tumor-specific	nAS	yes
UN_GPCPD1_LS0046	chr20:5610247|5610842:-	GPCPD1	glycerophosphocholine phosphodiesterase 1	protein coding gene	no	.	1.111	0.434	0.000	0.007(70)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
COG7_LS013	chr16:23410360|23413448:-	COG7	component of oligomeric golgi complex 7	protein coding gene	no	ENST00000307149.9;ENST00000567821.1	49.250	29.711	29.634	0.992(9506)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_AC087857.1_UP_LS0021	chr3:5740760|5743664:+	AC087857.1	-	lncRNA gene	no	.	1.732	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL136531.2_LS0016	chr20:1350481|1373078:+	AL136531.2	-	protein coding gene	no	.	0.849	0.160	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_WASH7P_UP_LS0106	chr1:15873|186372:-	WASH7P	WASP family homolog 7, pseudogene	pseudogene	no	.	12.955	0.361	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
GIGYF2_LS069	chr2:232839971|232844012:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	ENST00000471011.1	0.655	0.480	0.653	0.052(503)	0.105(74)	0.05(871)	non tumor-specific	alt_3prime	yes
UN_PLEC_LS0045	chr8:143915420|143915482:+	PLEC	plectin	protein coding gene	no	.	8.793	0.449	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LGSN_UP_LS0006	chr6:63321299|63350727:-	LGSN	lengsin, lens protein with glutamine synthetase domain	protein coding gene	no	.	2.828	0.521	0.000	0.02(191)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DNMBP_LS0028	chr10:99904987|99906610:+	DNMBP	dynamin binding protein	protein coding gene	no	.	7.285	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AKAP8_LS005	chr19:15362251|15368235:-	AKAP8	A-kinase anchoring protein 8	protein coding gene	no	ENST00000269701.6;ENST00000598597.6;ENST00000537303.5	50.029	26.500	33.386	0.991(9496)	0.996(699)	0.979(17017)	non tumor-specific	nAS	yes
ESR2_LS014	chr14:64268911|64279981:-	ESR2	estrogen receptor 2	protein coding gene	yes	ENST00000556275.5;ENST00000554572.5;ENST00000353772.7;ENST00000358599.9;ENST00000555278.5;ENST00000344288.10;ENST00000553796.5;ENST00000557772.5;ENST00000267525.10;ENST00000554520.1;ENST00000341099.5	1.712	0.705	1.106	0.099(945)	0.185(130)	0.344(5974)	non tumor-specific	exon_skip	yes
UN_EPOR_LS0004	chr19:11378778|11380053:-	EPOR	erythropoietin receptor	protein coding gene	no	.	2.674	0.359	0.000	0.024(227)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_DNAAF5_LS0074	chr7:768121|768178:+	DNAAF5	dynein axonemal assembly factor 5	protein coding gene	no	.	3.191	0.083	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC34A3_LS011	chr9:137233404|137233863:+	SLC34A3	solute carrier family 34 member 3	protein coding gene	no	.;.	2.382	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SLC12A9_LS015	chr7:100852839|100858835:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	ENST00000448342.5	0.013	0.020	0.715	0.213(2041)	0.097(68)	0.211(3672)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PAK5_UP_LS0010	chr20:9884932|9889689:-	PAK5	p21 (RAC1) activated kinase 6	protein coding gene	no	.	3.350	0.241	0.000	0.033(312)	0.006(4)	0(0)	non tumor-specific	nAS	no
GADL1_LS001	chr3:30728415|30778179:-	GADL1	glutamate decarboxylase like 1	protein coding gene	no	ENST00000282538.9;ENST00000498387.1	3.678	3.764	1.291	0.02(189)	0.127(89)	0.14(2425)	non tumor-specific	nAS	yes
TAF1_LS011	chrX:71382663|71382761:+	TAF1	TATA-box binding protein associated factor 1	protein coding gene	yes	ENST00000423759.5;ENST00000373790.8;ENST00000276072.7	12.899	7.934	9.279	0.82(7860)	0.91(639)	0.959(16675)	non tumor-specific	nAS	yes
ST7_LS033	chr7:117189393|117190133:+	ST7	suppression of tumorigenicity 7	protein coding gene	yes	ENST00000487459.5;ENST00000543837.5	0.736	0.523	3.927	0.518(4960)	0.57(400)	0.904(15719)	non tumor-specific	exon_skip	yes
AL670729.3_LS001	chr1:228384459|228384789:-	AL670729.3	-	lncRNA gene	no	ENST00000602345.1	0.197	0.050	0.768	0.093(890)	0.05(35)	0.149(2597)	non tumor-specific	nAS	yes
SFPQ_LS005	chr1:35178036|35178665:-	SFPQ	splicing factor proline and glutamine rich	protein coding gene	yes	ENST00000466745.5	0.981	0.431	2.567	0.723(6931)	0.705(495)	0.882(15324)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AC007743.1_LS001	chr2:56176150|56177563:-	AC007743.1	-	lncRNA gene	no	ENST00000596663.5;ENST00000432793.5;ENST00000447423.2	1.261	0.813	2.254	0.235(2250)	0.528(371)	0.704(12245)	non tumor-specific	nAS	yes
UN_SPON2_UP_LS0002	chr4:1209635|1210783:-	SPON2	spondin 2	protein coding gene	no	.	2.270	0.839	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC027644.4_LS0025	chr7:66654626|66712167:+	AC027644.4	-	protein coding gene	no	.	1.785	0.585	0.000	0.02(190)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_RAB1A_LS0036	chr2:65098066|65104741:-	RAB1A	RAB1A, member RAS oncogene family	protein coding gene	no	.	3.359	0.596	0.000	0.013(128)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC244517.11_LS0124	chr5:141188679|141241282:-	AC244517.11	-	lncRNA gene	no	.	2.724	0.249	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
POP1_LS013	chr8:98140888|98146568:+	POP1	pyrin domain containing 1	protein coding gene	no	ENST00000401707.6;ENST00000349693.3	7.195	3.047	2.467	0.869(8329)	0.821(576)	0.861(14959)	non tumor-specific	nAS	yes
OTUD5_LS010	chrX:48934612|48934711:-	OTUD5	OTU deubiquitinase 5	protein coding gene	no	ENST00000396743.7;ENST00000376488.7;ENST00000610466.4;ENST00000428668.2;ENST00000481142.1	124.211	73.324	94.408	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AC010983.1_UP_LS0020	chr2:195399504|195413308:-	AC010983.1	-	lncRNA gene	no	.	4.159	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CDX2_LS003	chr13:27963369|27964870:-	CDX2	caudal type homeobox 2	protein coding gene	yes	ENST00000381020.7;ENST00000548877.1;ENST00000381020.7;ENST00000548877.1	31.214	38.440	1.988	0.225(2152)	0.141(99)	0.11(1905)	non tumor-specific	alt_5prime;exon_skip	yes
TREM2_LS002	chr6:41158780|41159792:-	TREM2	triggering receptor expressed on myeloid cells 2	protein coding gene	no	ENST00000338469.3	0.150	0.350	1.065	0.788(7548)	0.617(433)	0.226(3928)	non tumor-specific	exon_skip	yes
AP005230.1_LS001	chr18:1884062|1886406:-	AP005230.1	-	lncRNA gene	no	ENST00000585072.6;ENST00000584867.1	0.953	0.082	0.715	0.04(382)	0.023(16)	0.013(224)	non tumor-specific	nAS	yes
ICOS_LS005	chr2:203957883|203959586:+	ICOS	inducible T cell costimulator	protein coding gene	no	ENST00000316386.10	3.030	1.365	1.015	0.359(3435)	0.299(210)	0.206(3582)	non tumor-specific	exon_skip	yes
UN_CENPK_LS0004	chr5:65529199|65541404:-	CENPK	centromere protein K	protein coding gene	no	.	1.086	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TBC1D32_LS037	chr6:121294660|121299446:-	TBC1D32	TBC1 domain family member 32	protein coding gene	no	ENST00000275159.10;ENST00000464622.5;ENST00000398212.6	2.494	1.365	1.620	0.39(3735)	0.486(341)	0.697(12115)	non tumor-specific	exon_skip	yes
DNAH17_LS076	chr17:78525161|78526651:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000585328.5;ENST00000389840.6	3.408	1.095	0.801	0.061(587)	0.014(10)	0.095(1656)	non tumor-specific	exon_skip	yes
UN_AC062020.1_UP_LS0048	chr2:122220919|122238047:+	AC062020.1	-	lncRNA gene	no	.	1.358	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-933P_UP_LS0038	chr11:61138835|61166278:-	RNU6-933P	RNA, U6 small nuclear 933, pseudogene	small non-coding RNA gene	no	.	3.311	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ESF1_LS003	chr20:13718984|13728378:-	ESF1	ESF1 nucleolar pre-rRNA processing protein homolog	protein coding gene	no	ENST00000202816.5	14.160	6.956	15.662	0.961(9207)	0.991(696)	0.963(16741)	non tumor-specific	exon_skip	yes
MAP2K5_LS006	chr15:67580823|67585890:+	MAP2K5	mitogen-activated protein kinase kinase 5	protein coding gene	no	ENST00000178640.9;ENST00000560591.5;ENST00000395476.6;ENST00000354498.9;ENST00000439036.5	25.488	16.256	19.810	0.978(9366)	0.991(696)	0.978(17006)	non tumor-specific	exon_skip	yes
HDLBP_LS080	chr2:241268953|241272761:-	HDLBP	high density lipoprotein binding protein	protein coding gene	no	ENST00000458564.5	0.051	0.063	0.663	0.265(2537)	0.199(140)	0.121(2111)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RRBP1_LS061	chr20:17659244|17659635:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.	40.279	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_GRIK4_LS0026	chr11:120576563|120653688:+	GRIK4	glutamate ionotropic receptor kainate type subunit 4	protein coding gene	no	.	1.228	0.537	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PSMD2_LS030	chr3:184308567|184308708:+	PSMD2	proteasome 26S subunit, non-ATPase 2	protein coding gene	no	ENST00000310118.8;ENST00000435761.5;ENST00000439383.5	193.719	85.628	190.170	0.991(9491)	0.996(699)	0.979(17021)	non tumor-specific	nAS	yes
UN_SRPK3_LS0013	chrX:153778661|153778813:+	SRPK3	SRSF protein kinase 3	protein coding gene	no	.	2.942	0.209	0.000	0.041(397)	0.013(9)	0(0)	non tumor-specific	nAS	no
EXOC3L1_LS013	chr16:67186657|67186759:-	EXOC3L1	exocyst complex component 3 like 1	protein coding gene	no	ENST00000314586.10;ENST00000564324.5	5.685	4.299	3.159	0.619(5926)	0.695(488)	0.774(13462)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DNAH10_LS040	chr12:123859268|123861012:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	3.002	1.059	0.942	0.011(103)	0.054(38)	0.068(1176)	non tumor-specific	nAS	yes
NUCKS1_LS005	chr1:205720653|205723926:-	NUCKS1	nuclear casein kinase and cyclin dependent kinase substrate 1	protein coding gene	no	ENST00000367142.4;ENST00000367142.4	530.598	278.123	178.485	0.999(9569)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PRUNE1_LS0002	chr1:151008671|151017815:+	PRUNE1	prune exopolyphosphatase 1	protein coding gene	no	.	4.880	1.159	0.000	0.006(61)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
DMBT1P1_LS026	chr10:122820550|122820918:+	DMBT1P1	deleted in malignant brain tumors 1 like 1 (pseudogene)	pseudogene	no	ENST00000442370.6	4.483	0.000	0.841	0.001(14)	0(0)	0.05(861)	non tumor-specific	nAS	yes
UN_MED12_LS0050	chrX:71140857|71141284:+	MED12	mediator complex subunit 12	protein coding gene	no	.	9.072	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_CABYR_LS0006	chr18:24141114|24155989:-	CABYR	calcium binding tyrosine phosphorylation regulated	protein coding gene	no	.	2.833	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
C3_LS031	chr19:6697556|6697652:-	C3	complement C3	protein coding gene	no	ENST00000245907.10	271.773	362.635	86.402	0.914(8753)	0.976(685)	0.965(16771)	non tumor-specific	alt_3prime	yes
UN_PSMF1_LS0102	chr20:1184380|1185138:-	PSMF1	proteasome inhibitor subunit 1	protein coding gene	no	.	1.346	0.224	0.000	0.059(562)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF404_LS0011	chr19:43881792|43883956:-	ZNF404	zinc finger protein 404	protein coding gene	no	.	1.457	0.495	0.000	0.027(258)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_DIRC3_LS0001	chr2:217328152|217336174:-	DIRC3	disrupted in renal carcinoma 3	lncRNA gene	no	.	1.279	0.051	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FTCD_LS0027	chr21:46143132|46145417:-	FTCD	formimidoyltransferase cyclodeaminase	protein coding gene	no	.	2.204	2.122	0.000	0.005(46)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NBPF5P_LS007	chr1:108381136|108382546:+	NBPF5P	NBPF member 5, pseudogene	pseudogene	no	ENST00000357046.4	4.791	0.161	0.692	0.033(316)	0.007(5)	0.002(40)	non tumor-specific	nAS	yes
RASA4CP_LS006	chr7:44034311|44036672:-	RASA4CP	RAS p21 protein activator 4C, pseudogene	pseudogene	no	ENST00000424092.2	9.059	5.364	4.992	0.665(6376)	0.789(554)	0.942(16378)	non tumor-specific	nAS	yes
UN_UVRAG_LS0071	chr11:76116007|76140711:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	.	4.708	0.042	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AP001029.2_UP_LS0005	chr18:12438624|12438890:+	AP001029.2	-	lncRNA gene	no	.	2.414	0.007	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
CHRNB4_LS013	chr15:78649439|78652578:-	CHRNB4	cholinergic receptor nicotinic beta 4 subunit	protein coding gene	no	ENST00000559849.5	1.166	0.000	0.649	0.002(23)	0(0)	0.003(52)	non tumor-specific	exon_skip	yes
UN_CAPN15_LS0105	chr16:553041|553315:+	CAPN15	calpain 15	protein coding gene	no	.	8.831	2.911	0.000	0.118(1131)	0.088(62)	0(0)	non tumor-specific	alt_3prime	no
AC010975.1_LS002	chr2:79498155|79498925:-	AC010975.1	-	lncRNA gene	no	ENST00000443301.1	3.550	0.081	1.789	0.021(199)	0.003(2)	0.101(1753)	non tumor-specific	nAS	yes
UN_ZNF124_LS0027	chr1:247159813|247171338:-	ZNF124	zinc finger protein 124	protein coding gene	no	.	1.372	0.233	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_PYY2_UP_LS0013	chr17:28224101|28224278:+	PYY2	peptide YY 2 (pseudogene)	pseudogene	no	.	0.852	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01378_LS005	chr4:117464538|117468150:+	LINC01378	long intergenic non-protein coding RNA 1378	lncRNA gene	no	ENST00000437514.1	0.635	0.680	1.345	0.001(12)	0.004(3)	0.039(682)	non tumor-specific	nAS	yes
SAFB_LS008	chr19:5648043|5648989:+	SAFB	scaffold attachment factor B	protein coding gene	yes	ENST00000589863.5;ENST00000292123.9;ENST00000592224.5;ENST00000454510.5;ENST00000588852.1	103.390	56.115	48.425	0.994(9523)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CYP4F25P_LS002	chr9:64466155|64466345:+	CYP4F25P	cytochrome P450 family 4 subfamily F member 25, pseudogene	pseudogene	no	ENST00000446871.1	0.276	0.040	0.735	0.02(194)	0.007(5)	0.063(1089)	non tumor-specific	nAS	yes
FOCAD_LS055	chr9:20952515|20952985:+	FOCAD	focadhesin	protein coding gene	no	ENST00000603631.1	1.161	0.507	0.779	0.002(23)	0.034(24)	0.03(530)	non tumor-specific	nAS	yes
SLC22A25_LS018	chr11:63228564|63229251:-	SLC22A25	solute carrier family 22 member 25	protein coding gene	no	ENST00000306494.10;ENST00000527057.5;ENST00000528239.5	2.524	1.778	1.030	0.024(227)	0.06(42)	0.042(733)	non tumor-specific	nAS	yes
CYP4A22_LS001	chr1:47137680|47140780:+	CYP4A22	cytochrome P450 family 4 subfamily A member 22	protein coding gene	no	ENST00000490948.5;ENST00000485117.1;ENST00000371890.7;ENST00000619754.4;ENST00000294337.7;ENST00000371891.7;ENST00000620131.1	9.672	19.159	6.487	0.027(258)	0.131(92)	0.022(376)	non tumor-specific	nAS	yes
SLC4A1AP_LS010	chr2:27677364|27677738:+	SLC4A1AP	solute carrier family 4 member 1 adaptor protein	protein coding gene	no	ENST00000326019.10;ENST00000613058.4;ENST00000618046.4	55.876	32.622	31.312	0.992(9500)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
SRC_LS002	chr20:37345229|37365204:+	SRC	SRC proto-oncogene, non-receptor tyrosine kinase	protein coding gene	yes	.;.	6.185	2.941	0.000	0.048(461)	0.098(69)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
COL16A1_LS090	chr1:31692509|31692598:-	COL16A1	collagen type XVI alpha 1 chain	protein coding gene	no	ENST00000373672.7;ENST00000373668.7;ENST00000373667.4	19.184	12.209	48.781	0.817(7823)	0.905(635)	0.943(16393)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF862_LS0032	chr7:149853068|149854255:+	ZNF862	zinc finger protein 862	protein coding gene	no	.	0.923	0.018	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FAM160B2_LS0045	chr8:22099622|22099704:+	FAM160B2	family with sequence similarity 160 member B2	protein coding gene	no	.	1.152	0.033	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_MICALL2_LS0012	chr7:1435741|1436742:-	MICALL2	MICAL like 2	protein coding gene	no	.	16.241	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SULT1A2_LS004	chr16:28592443|28595367:-	SULT1A2	sulfotransferase family 1A member 2	protein coding gene	no	.;.	4.969	2.722	0.000	0.011(108)	0.014(10)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_GPC5_LS0018	chr13:91764856|91823397:+	GPC5	glypican 5	protein coding gene	yes	.	3.361	0.512	0.000	0.008(76)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
UN_EI24P4_UP_LS0001	chr7:144404662|144601595:+	EI24P4	EI24 pseudogene 4	pseudogene	no	.	2.342	0.087	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
HNRNPUL2_LS006	chr11:62721423|62721820:-	HNRNPUL2	heterogeneous nuclear ribonucleoprotein U like 2	protein coding gene	no	ENST00000301785.6	228.261	142.640	195.333	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
CFDP1_LS020	chr16:75414695|75433289:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000283882.3;ENST00000566901.5;ENST00000564286.1	68.649	44.314	65.257	0.932(8934)	0.949(666)	0.979(17020)	non tumor-specific	nAS	yes
TMEM50B_LS003	chr21:33436992|33439214:-	TMEM50B	transmembrane protein 50B	protein coding gene	no	ENST00000484377.5;ENST00000468874.2	5.307	2.561	23.872	0.965(9241)	0.96(674)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRODH2_LS0006	chr19:35812045|35812134:-	PRODH2	proline dehydrogenase 2	protein coding gene	no	.	8.089	3.272	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SUSD5_LS001	chr3:33154033|33174886:-	SUSD5	sushi domain containing 5	protein coding gene	no	ENST00000309558.7	3.449	1.911	2.400	0.366(3505)	0.553(388)	0.68(11819)	non tumor-specific	exon_skip	yes
UN_CDC42EP1_LS0155	chr22:37568849|37568939:-	CDC42EP1	CDC42 effector protein 1	protein coding gene	no	.	6.378	0.608	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
TPM4_LS022	chr19:16089120|16093536:+	TPM4	tropomyosin 4	protein coding gene	no	ENST00000344824.10;ENST00000646974.1;ENST00000647464.1;ENST00000586833.6;ENST00000588507.5;ENST00000300933.8;ENST00000645471.1;ENST00000647037.1;ENST00000643579.1;ENST00000646575.1;ENST00000642221.1;ENST00000590180.2;ENST00000592138.5;ENST00000588032.5;ENST00000586193.5;ENST00000591645.2	534.946	363.011	444.017	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
SCIN_LS027	chr7:12640517|12644138:+	SCIN	scinderin	protein coding gene	no	ENST00000297029.9;ENST00000519209.5	45.744	57.579	3.648	0.691(6616)	0.798(560)	0.706(12267)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC145343.1_UP_LS0005	chr17:68116212|68116375:-	AC145343.1	-	lncRNA gene	no	.	0.958	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC023310.4_UP_LS0009	chr15:20646512|20669468:-	AC023310.4	-	lncRNA gene	no	.	5.567	0.788	0.000	0.051(488)	0.031(22)	0(0)	non tumor-specific	nAS	no
TG_LS047	chr8:132967970|132969458:+	TG	thyroglobulin	protein coding gene	no	ENST00000220616.8;ENST00000523756.5;ENST00000519178.5;ENST00000519543.5	129.358	394.010	2.105	0.129(1233)	0.168(118)	0.731(12700)	non tumor-specific	exon_skip	yes
LINC01099_LS004	chr4:177903948|177907744:-	LINC01099	long intergenic non-protein coding RNA 1099	lncRNA gene	no	ENST00000514736.1	0.116	0.071	0.987	0.05(479)	0.084(59)	0.076(1323)	non tumor-specific	nAS	yes
GCOM1_LS031	chr15:57691972|57711984:+	GCOM1	RNA polymerase II subunit M	protein coding gene	no	ENST00000496627.5;ENST00000463717.5	0.035	0.033	0.676	0.003(31)	0.011(8)	0.008(137)	non tumor-specific	mutex_exons	yes
CACFD1_LS008	chr9:133465158|133465322:+	CACFD1	calcium channel flower domain containing 1	protein coding gene	no	ENST00000474734.5	0.132	0.472	0.804	0.211(2022)	0.352(247)	0.324(5625)	non tumor-specific	exon_skip	yes
UN_SLC7A13_LS0002	chr8:86223103|86229221:-	SLC7A13	solute carrier family 7 member 13	protein coding gene	no	.	7.357	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
CFL1_LS002	chr11:65824648|65826276:-	CFL1	cofilin 1	protein coding gene	no	ENST00000527752.1	1.329	0.448	0.728	0.002(20)	0.007(5)	0.081(1409)	non tumor-specific	nAS	yes
RNMT_LS012	chr18:13746337|13752305:+	RNMT	RNA guanine-7 methyltransferase	protein coding gene	no	ENST00000593007.1	0.375	0.221	0.665	0.122(1170)	0.114(80)	0.105(1824)	non tumor-specific	alt_3prime	yes
DUXAP10_LS010	chr14:19331617|19337580:-	DUXAP10	double homeobox A pseudogene 10	pseudogene	no	ENST00000612696.4;ENST00000616922.4	0.084	0.036	0.605	0.293(2806)	0.135(95)	0(8)	non tumor-specific	nAS	yes
SH3BP5_LS020	chr3:15330566|15331784:-	SH3BP5	SH3 domain binding protein 5	protein coding gene	no	ENST00000459627.1	0.011	0.012	0.666	0.475(4554)	0.682(479)	0.046(792)	non tumor-specific	alt_5prime	yes
TBX19_LS005	chr1:168300483|168305008:+	TBX19	T-box transcription factor 19	protein coding gene	no	ENST00000367821.7;ENST00000441464.1	1.332	0.754	3.128	0.681(6524)	0.709(498)	0.842(14632)	non tumor-specific	exon_skip	yes
FO393401.2_LS003	chr20:35522238|35522391:-	FO393401.2	-	pseudogene	no	ENST00000422009.5;ENST00000432650.1	0.186	0.000	0.684	0(4)	0(0)	0.006(107)	non tumor-specific	nAS	yes
UN_C12orf49_LS0021	chr12:116723223|116730585:-	C12orf49	SREBF pathway regulator in golgi 1	protein coding gene	no	.	2.137	0.565	0.000	0.013(127)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PAXIP1_LS026	chr7:154998784|155000080:-	PAXIP1	PAX interacting protein 1	protein coding gene	no	ENST00000473219.5	0.397	0.141	0.884	0.438(4198)	0.456(320)	0.428(7444)	non tumor-specific	alt_5prime;exon_skip	yes
UN_OSBPL5_LS0046	chr11:3129169|3155677:-	OSBPL5	oxysterol binding protein like 5	protein coding gene	no	.	1.616	0.000	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC106881.1_LS0001	chr4:95549231|95549549:+	AC106881.1	-	lncRNA gene	no	.	3.648	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
DPF3_LS023	chr14:72806872|72836084:-	DPF3	double PHD fingers 3	protein coding gene	no	ENST00000555469.1	0.082	0.000	0.693	0(1)	0(0)	0.002(34)	non tumor-specific	nAS	yes
AC009299.3_LS005	chr2:161246614|161248524:-	AC009299.3	-	lncRNA gene	no	ENST00000435692.6;ENST00000628617.2;ENST00000628042.2;ENST00000628613.2;ENST00000610254.1	0.096	0.000	0.669	0(4)	0(0)	0.003(44)	non tumor-specific	nAS	yes
AC079848.1_LS002	chr3:126084452|126092565:+	AC079848.1	-	lncRNA gene	no	ENST00000507924.1	0.362	0.145	0.780	0.047(446)	0.125(88)	0.182(3166)	non tumor-specific	nAS	yes
UN_SETD6P1_UP_LS0042	chr2:108505749|108511930:-	SETD6P1	SET domain containing 6 pseudogene 1	pseudogene	no	.	1.426	0.109	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
SAG_LS014	chr2:233327197|233328478:+	SAG	S-antigen visual arrestin	protein coding gene	yes	ENST00000409110.5;ENST00000474206.1	3.284	0.121	1.512	0.003(28)	0.004(3)	0.076(1319)	non tumor-specific	nAS	yes
UN_PDAP1_LS0077	chr7:99400418|99403398:-	PDAP1	PDGFA associated protein 1	protein coding gene	no	.	36.701	6.045	0.000	0.008(81)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CCDC39_LS048	chr3:180708904|180711193:-	CCDC39	coiled-coil domain containing 39	protein coding gene	no	ENST00000476379.5	4.818	0.497	3.854	0.012(111)	0.058(41)	0.703(12222)	non tumor-specific	nAS	yes
AC245052.1_LS001	chr19:54199756|54199865:-	AC245052.1	-	lncRNA gene	no	ENST00000426213.1	0.266	0.023	0.660	0.004(35)	0.004(3)	0.003(51)	non tumor-specific	nAS	yes
UN_TULP4_LS0019	chr6:158245333|158282263:+	TULP4	TUB like protein 4	protein coding gene	no	.	1.284	0.409	0.000	0.048(464)	0.026(18)	0(0)	non tumor-specific	nAS	no
ARAP2_LS053	chr4:36229645|36244179:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	ENST00000303965.8	1.921	1.564	2.437	0.631(6048)	0.785(551)	0.717(12460)	non tumor-specific	nAS	yes
CNTNAP3P2_LS004	chr9:67174007|67188785:+	CNTNAP3P2	CNTNAP3 pseudogene 2	pseudogene	no	ENST00000617175.1	2.934	1.606	0.817	0.207(1984)	0.409(287)	0.238(4130)	non tumor-specific	alt_3prime;exon_skip	yes
ASB5_LS011	chr4:176275906|176277229:-	ASB5	ankyrin repeat and SOCS box containing 5	protein coding gene	no	ENST00000505299.1	1.338	1.796	0.989	0.061(587)	0.218(153)	0.146(2536)	non tumor-specific	nAS	yes
GGA1_LS042	chr22:37623633|37629462:+	GGA1	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein coding gene	no	ENST00000325180.12;ENST00000325180.12	5.150	2.840	3.453	0.88(8435)	0.882(619)	0.941(16354)	non tumor-specific	alt_3prime;exon_skip	yes
AMHR2_LS003	chr12:53424900|53425165:+	AMHR2	anti-Mullerian hormone receptor type 2	protein coding gene	no	ENST00000257863.8;ENST00000550311.5;ENST00000379791.7	3.492	1.554	0.870	0.01(93)	0.003(2)	0.029(497)	non tumor-specific	exon_skip	yes
HERC2_LS006	chr15:28116859|28117013:-	HERC2	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000261609.11;ENST00000650509.1;ENST00000566635.5	53.941	33.377	48.192	0.985(9434)	0.989(694)	0.978(17005)	non tumor-specific	alt_5prime	yes
LCAT_LS006	chr16:67940478|67942671:-	LCAT	lecithin-cholesterol acyltransferase	protein coding gene	no	.;.	0.832	0.281	0.000	0.003(28)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_STEAP1B_LS0418	chr7:22572760|22575980:-	STEAP1B	STEAP family member 1B	protein coding gene	no	.	1.457	0.159	0.000	0.005(49)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RASGEF1A_LS0024	chr10:43206122|43218676:-	RASGEF1A	RasGEF domain family member 1A	protein coding gene	no	.	0.832	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
WNK3_LS020	chrX:54294847|54298175:-	WNK3	WNK lysine deficient protein kinase 3	protein coding gene	no	ENST00000375169.7;ENST00000354646.6;ENST00000375159.6;ENST00000620763.1	14.678	0.488	0.841	0.125(1200)	0.164(115)	0.323(5607)	non tumor-specific	nAS	yes
PARP12_LS018	chr7:140041839|140046884:-	PARP12	poly(ADP-ribose) polymerase family member 12	protein coding gene	no	ENST00000263549.7;ENST00000473341.5;ENST00000488726.5;ENST00000493262.1	23.114	14.707	12.973	0.985(9437)	0.994(698)	0.972(16888)	non tumor-specific	alt_3prime;exon_skip	yes
ZER1_LS018	chr9:128755659|128771581:-	ZER1	zyg-11 related cell cycle regulator	protein coding gene	no	ENST00000291900.6	11.910	14.416	15.598	0.954(9138)	0.981(689)	0.977(16989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMCO3_LS0021	chr13:113510424|113510541:+	TMCO3	transmembrane and coiled-coil domains 3	protein coding gene	no	.	3.889	0.196	0.000	0.013(126)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PLEC_LS040	chr8:143937242|143937749:-	PLEC	plectin	protein coding gene	no	ENST00000528025.5	0.123	0.429	1.150	0.385(3687)	0.456(320)	0.237(4127)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ANXA11_LS015	chr10:80166197|80166890:-	ANXA11	annexin A11	protein coding gene	no	ENST00000372231.7;ENST00000438331.5;ENST00000265447.8;ENST00000422982.7	460.674	378.530	242.899	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CNTNAP3B_LS033	chr9:41986311|41991610:-	CNTNAP3B	contactin associated protein family member 3B	protein coding gene	no	ENST00000612828.4;ENST00000377561.6;ENST00000619138.4;ENST00000618777.4;ENST00000479351.5;ENST00000617422.4;ENST00000341990.8	1.540	0.963	2.705	0.321(3075)	0.598(420)	0.682(11849)	non tumor-specific	nAS	yes
PAK1_LS036	chr11:77392541|77455881:-	PAK1	protein kinase N1	protein coding gene	yes	ENST00000524847.5	0.056	0.002	0.691	0.005(44)	0.001(1)	0.03(528)	non tumor-specific	exon_skip;mutex_exons	yes
UN_WWP2_LS0023	chr16:69917467|69917709:+	WWP2	WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	.	1.386	0.203	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_GJC1_LS0010	chr17:44801173|44801762:-	GJC1	gap junction protein delta 3	protein coding gene	no	.	1.220	0.369	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
OSBP2_LS006	chr22:30764392|30870429:+	OSBP2	oxysterol binding protein 2	protein coding gene	no	ENST00000401475.5	0.001	0.001	0.772	0.176(1684)	0.182(128)	0.002(38)	non tumor-specific	nAS	yes
UBTF_LS015	chr17:44209733|44210124:-	UBTF	upstream binding transcription factor	protein coding gene	no	ENST00000343638.9;ENST00000302904.8;ENST00000527034.5;ENST00000533177.5;ENST00000436088.5;ENST00000393606.7;ENST00000526094.5;ENST00000529383.5;ENST00000531368.1;ENST00000529373.1	108.517	65.851	113.991	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PTPN12_LS0017	chr7:77592256|77600664:+	PTPN12	protein tyrosine phosphatase non-receptor type 12	protein coding gene	yes	.	30.356	3.398	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MTMR2_LS001	chr11:95835451|95836148:-	MTMR2	myotubularin related protein 2	protein coding gene	no	ENST00000346299.9;ENST00000393223.7;ENST00000409459.5;ENST00000352297.11;ENST00000444541.6	48.047	29.426	33.706	0.947(9072)	0.954(670)	0.978(16995)	non tumor-specific	nAS	yes
UN_LRRK1_LS0042	chr15:101050779|101065442:-	LRRK1	leucine rich repeat kinase 1	protein coding gene	no	.	1.431	0.587	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
VEGFA_LS007	chr6:43778536|43778889:+	VEGFA	vascular endothelial growth factor A	protein coding gene	yes	ENST00000372067.7;ENST00000640482.1;ENST00000417285.6;ENST00000611736.5;ENST00000621747.5;ENST00000640653.1;ENST00000615393.5;ENST00000640499.1;ENST00000413642.7;ENST00000372055.8;ENST00000617771.5;ENST00000482630.6;ENST00000425836.6;ENST00000372064.8;ENST00000372077.8;ENST00000519767.5;ENST00000520948.5;ENST00000518538.5;ENST00000523873.5;ENST00000523950.5;ENST00000518689.5;ENST00000523125.5;ENST00000518824.5;ENST00000230480.10;ENST00000480614.1;ENST00000497139.5;ENST00000493786.2	76.608	36.172	144.539	0.996(9539)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TTC4P1_UP_LS0009	chr7:46193351|46205112:-	TTC4P1	tetratricopeptide repeat domain 4 pseudogene 1	pseudogene	no	.	2.033	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SRP54-AS1_LS011	chr14:34969307|34982430:-	SRP54-AS1	SRP54 antisense RNA 1 (head to head)	pseudogene	no	ENST00000556355.5;ENST00000636540.1	2.868	1.405	1.104	0.069(663)	0.068(48)	0.613(10663)	non tumor-specific	nAS	yes
DPY19L2P1_LS009	chr7:35118789|35119649:-	DPY19L2P1	DPY19L2 pseudogene 1	pseudogene	no	ENST00000458672.5	1.424	0.016	0.896	0.016(149)	0.001(1)	0.059(1031)	non tumor-specific	nAS	yes
CD300LF_LS012	chr17:74703098|74704478:-	CD300LF	CD300 molecule like family member f	protein coding gene	no	ENST00000343125.8;ENST00000326165.10;ENST00000469092.5;ENST00000301573.13;ENST00000464910.5;ENST00000462044.5	5.394	4.592	1.356	0.601(5756)	0.486(341)	0.418(7261)	non tumor-specific	alt_3prime	yes
GINS3_LS005	chr16:58329949|58386621:+	GINS3	GINS complex subunit 3	protein coding gene	no	ENST00000568468.5	2.306	0.138	1.547	0.056(536)	0.01(7)	0.177(3085)	non tumor-specific	exon_skip	yes
UN_RHPN2_LS0005	chr19:32978916|32979053:+	RHPN2	rhophilin Rho GTPase binding protein 2	protein coding gene	no	.	3.771	0.645	0.000	0.009(85)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MRTFA_LS0075	chr22:40590645|40594674:-	MRTFA	myocardin related transcription factor A	protein coding gene	no	.	1.201	0.191	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MCAM_LS003	chr11:119309915|119310756:-	MCAM	melanoma cell adhesion molecule	protein coding gene	no	ENST00000524940.5	1.123	1.072	13.054	0.839(8035)	0.887(623)	0.906(15747)	non tumor-specific	exon_skip	yes
UN_GNG5_LS0002	chr1:84498548|84506011:-	GNG5	G protein subunit gamma 5	protein coding gene	no	.	49.631	22.277	0.000	0.47(4499)	0.429(301)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC018638.4_UP_LS0024	chr7:128631323|128631680:+	AC018638.4	-	pseudogene	no	.	2.715	0.189	0.000	0.004(42)	0.006(4)	0(0)	non tumor-specific	nAS	no
INTS4_LS027	chr11:77960391|77960953:-	INTS4	integrator complex subunit 4	protein coding gene	yes	ENST00000433818.6;ENST00000534064.5;ENST00000529807.5	18.931	10.080	11.256	0.941(9014)	0.976(685)	0.975(16946)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_THORLNC_LS0001	chr2:118132372|118142880:-	THORLNC	testis associated oncogenic lncRNA	lncRNA gene	no	.	2.167	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
THOC2_LS056	chrX:123696154|123696721:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000433883.1	15.853	8.696	10.488	0.863(8264)	0.942(661)	0.95(16517)	non tumor-specific	intron_retention	yes
UN_ARHGAP33_LS0011	chr19:35782901|35784172:+	ARHGAP33	Rho GTPase activating protein 33	protein coding gene	no	.	2.265	0.017	0.000	0.012(113)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
MCM3_LS020	chr6:52282175|52282653:-	MCM3	minichromosome maintenance complex component 3	protein coding gene	no	ENST00000229854.11;ENST00000596288.5;ENST00000616552.4;ENST00000419835.7;ENST00000596983.1	98.846	36.666	25.088	0.988(9462)	0.994(698)	0.979(17012)	non tumor-specific	nAS	yes
UN_ZNF770_LS0010	chr15:34983490|34984379:-	ZNF770	zinc finger protein 770	protein coding gene	no	.	1.451	0.217	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ORC2_LS0030	chr2:200943147|200949554:-	ORC2	origin recognition complex subunit 2	protein coding gene	no	.	1.376	0.481	0.000	0.018(174)	0.026(18)	0(0)	non tumor-specific	exon_skip	no
LRRC28_LS003	chr15:99251984|99255898:+	LRRC28	leucine rich repeat containing 28	protein coding gene	no	ENST00000558861.1	0.040	0.076	0.673	0.392(3751)	0.556(390)	0.104(1811)	non tumor-specific	nAS	yes
TCP11_LS008	chr6:35122337|35128580:-	TCP11	t-complex 11	protein coding gene	no	ENST00000505335.1	0.071	0.000	0.729	0(4)	0(0)	0.001(19)	non tumor-specific	nAS	yes
RAD54L_LS030	chr1:46272802|46273355:+	RAD54L	RAD54 like	protein coding gene	no	ENST00000442598.5;ENST00000371975.8;ENST00000476687.2;ENST00000459678.2	9.361	1.193	2.260	0.761(7294)	0.241(169)	0.681(11831)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC009630.1_LS001	chr8:41534410|41537071:-	AC009630.1	-	lncRNA gene	no	ENST00000523081.1	0.532	0.350	0.862	0.249(2382)	0.333(234)	0.39(6774)	non tumor-specific	nAS	yes
UN_PRKD2_LS0030	chr19:46713965|46716131:-	PRKD2	protein kinase D2	protein coding gene	no	.	3.019	0.483	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BPIFA1_LS008	chr20:33239910|33240233:+	BPIFA1	BPI fold containing family A member 1	protein coding gene	no	ENST00000354297.8;ENST00000375422.6;ENST00000375413.8;ENST00000618484.1	16.194	5.358	1.886	0.114(1096)	0.15(105)	0.058(1002)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FAM126B_LS0031	chr2:201061424|201071610:-	FAM126B	family with sequence similarity 126 member B	protein coding gene	no	.	0.538	0.156	0.000	0.015(148)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
PDZD3_LS012	chr11:119185952|119186616:+	PDZD3	PDZ domain containing 3	protein coding gene	no	ENST00000528730.1	0.097	0.000	0.657	0(1)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_AL049697.1_LS0015	chr6:87435053|87464020:+	AL049697.1	-	protein coding gene	no	.	1.876	0.818	0.000	0.019(181)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC092920.1_LS0027	chr3:176844754|176845215:-	AC092920.1	-	lncRNA gene	no	.	3.162	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
RYR2_LS099	chr1:237792323|237793867:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7;ENST00000608590.5	4.934	4.905	9.459	0.246(2356)	0.38(267)	0.807(14026)	non tumor-specific	nAS	yes
UN_ZNF653_LS0015	chr19:11504649|11505488:-	ZNF653	zinc finger protein 653	protein coding gene	no	.	0.623	0.399	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SP100_LS0079	chr2:230521075|230539267:+	SP100	SP100 nuclear antigen	protein coding gene	yes	.	2.410	1.876	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC025244.2_LS003	chr4:75347453|75358970:-	AC025244.2	-	lncRNA gene	no	ENST00000509215.1	1.366	0.000	0.841	0.002(15)	0(0)	0.009(149)	non tumor-specific	nAS	yes
UN_PRKCD_LS0036	chr3:53168820|53178404:+	PRKCD	protein kinase C delta	protein coding gene	yes	.	1.410	0.081	0.000	0.015(146)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LSS_LS0062	chr21:46192999|46193472:+	LSS	lanosterol synthase	protein coding gene	no	.	6.688	0.184	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
AL139220.2_LS032	chr1:44105514|44113821:+	AL139220.2	-	lncRNA gene	no	ENST00000627824.2	0.485	0.159	0.690	0.006(54)	0.009(6)	0.016(286)	non tumor-specific	nAS	yes
UN_LRP4_LS0069	chr11:46902929|46907382:-	LRP4	LDL receptor related protein 4	protein coding gene	no	.	0.783	0.161	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_WDR34_LS0036	chr9:128636338|128636368:-	WDR34	dynein 2 intermediate chain 2	protein coding gene	no	.	74.676	3.057	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
MTHFD2P1_LS005	chr3:95681125|95682601:-	MTHFD2P1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1	pseudogene	no	ENST00000494840.1	0.059	0.000	0.756	0.002(17)	0(0)	0.004(72)	non tumor-specific	nAS	yes
LCN15_LS008	chr9:136764009|136764393:-	LCN15	lipocalin 15	protein coding gene	no	ENST00000316144.5	9.260	1.766	0.920	0.067(642)	0.103(72)	0.136(2367)	non tumor-specific	alt_3prime;intron_retention	yes
NFYA_LS010	chr6:41084192|41089579:+	NFYA	nuclear transcription factor Y subunit alpha	protein coding gene	no	ENST00000341376.10;ENST00000353205.5	26.426	12.592	11.444	0.968(9279)	0.983(690)	0.977(16978)	non tumor-specific	alt_3prime;exon_skip	yes
AKR1E2_LS008	chr10:4830842|4835675:+	AKR1E2	aldo-keto reductase family 1 member E2	protein coding gene	no	ENST00000525281.5	0.154	0.090	0.981	0.279(2672)	0.249(175)	0.494(8585)	non tumor-specific	exon_skip	yes
PMP2_LS003	chr8:81444601|81447314:-	PMP2	peripheral myelin protein 2	protein coding gene	no	ENST00000519260.1	0.474	0.187	2.514	0.084(809)	0.046(32)	0.222(3857)	non tumor-specific	exon_skip	yes
LINC00311_LS001	chr16:85283557|85284998:+	LINC00311	long intergenic non-protein coding RNA 311	lncRNA gene	no	ENST00000366314.4	0.112	0.009	0.614	0.011(104)	0.004(3)	0.008(145)	non tumor-specific	nAS	yes
MROH2B_LS031	chr5:41049436|41050977:-	MROH2B	maestro heat like repeat family member 2B	protein coding gene	no	ENST00000503890.5;ENST00000515297.5;ENST00000506092.6;ENST00000399564.4;ENST00000508575.1	13.657	0.000	0.667	0(3)	0(0)	0.019(331)	non tumor-specific	nAS	yes
SLX4_LS004	chr16:3591310|3592699:-	SLX4	SLX4 structure-specific endonuclease subunit	protein coding gene	yes	ENST00000294008.3	5.530	2.508	3.699	0.817(7827)	0.798(560)	0.943(16384)	non tumor-specific	exon_skip	yes
UN_UNKL_LS0052	chr16:1397295|1397383:-	UNKL	unk like zinc finger	protein coding gene	no	.	1.643	0.544	0.000	0.006(53)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SYT15_LS0001	chr10:46579175|46580169:+	SYT15	synaptotagmin 15	protein coding gene	no	.	0.452	0.404	0.000	0.002(20)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_AC131009.2_LS0001	chr12:131860765|131863051:+	AC131009.2	-	lncRNA gene	no	.	2.094	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CYP1B1-AS1_LS001	chr2:38073490|38074307:+	CYP1B1-AS1	CYP1B1 antisense RNA 1	lncRNA gene	no	ENST00000628232.2;ENST00000629719.2	0.102	0.000	0.672	0(1)	0(0)	0.059(1031)	non tumor-specific	nAS	yes
UN_ZDHHC20P1_UP_LS0008	chr6:29721148|29792107:-	ZDHHC20P1	zinc finger DHHC-type containing 20 pseudogene 1	pseudogene	no	.	1.972	0.068	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AP002495.1_LS021	chr11:71928035|71928449:-	AP002495.1	-	protein coding gene	no	.;.	3.479	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
PAM16_LS013	chr16:4343594|4345786:-	PAM16	presequence translocase associated motor 16	protein coding gene	no	ENST00000571941.5	0.043	0.042	0.800	0.537(5143)	0.476(334)	0.375(6514)	non tumor-specific	nAS	yes
UN_IL4R_LS0051	chr16:27362861|27362986:-	IL4R	interleukin 4 receptor	protein coding gene	no	.	3.260	1.577	0.000	0.009(85)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_PCGF2_LS0027	chr17:38735341|38735492:-	PCGF2	polycomb group ring finger 2	protein coding gene	yes	.	2.217	4.923	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PPM1J_LS013	chr1:112713611|112714058:-	PPM1J	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein coding gene	no	ENST00000464951.1	0.879	0.235	1.952	0.163(1558)	0.08(56)	0.692(12030)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_EIF4EBP2_LS0050	chr10:70427587|70427772:-	EIF4EBP2	eukaryotic translation initiation factor 4E binding protein 2	protein coding gene	no	.	1.861	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRPF38B_LS011	chr1:108696337|108696740:+	PRPF38B	pre-mRNA processing factor 38B	protein coding gene	no	ENST00000370022.9	0.028	0.023	0.740	0.195(1869)	0.177(124)	0.276(4794)	non tumor-specific	intron_retention	yes
HSPA5_LS007	chr9:125240907|125241005:-	HSPA5	heat shock protein family A (Hsp70) member 5	protein coding gene	yes	ENST00000324460.6	600.671	341.345	161.766	0.995(9531)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
TGM4_LS012	chr3:44903987|44906949:+	TGM4	transglutaminase 4	protein coding gene	no	ENST00000296125.8;ENST00000459830.1	0.656	1.161	0.850	0.121(1158)	0.081(57)	0.063(1101)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_NANOGP10_UP_LS0009	chrX:43619198|43621106:-	NANOGP10	Nanog homeobox pseudogene 10	pseudogene	no	.	6.681	0.211	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC139769.1_LS0048	chr19:23784472|23786272:+	AC139769.1	-	pseudogene	no	.	2.445	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
WDR5_LS007	chr9:134141583|134141949:+	WDR5	WD repeat domain 5	protein coding gene	no	ENST00000608739.5;ENST00000358625.3	71.810	32.575	34.487	0.992(9504)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
PDP2_LS017	chr16:66886645|66892554:+	PDP2	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein coding gene	no	ENST00000566805.5	1.162	0.126	0.719	0.007(64)	0.028(20)	0.159(2765)	non tumor-specific	exon_skip	yes
UN_STX10_LS0011	chr19:13144870|13145292:-	STX10	syntaxin 10	protein coding gene	no	.	32.955	9.325	0.000	0.013(120)	0.013(9)	0(0)	non tumor-specific	alt_5prime;mutex_exons	no
ADH1A_LS006	chr4:99279564|99280144:-	ADH1A	alcohol dehydrogenase 1A (class I), alpha polypeptide	protein coding gene	no	ENST00000209668.2	42.538	196.918	0.912	0.075(717)	0.197(138)	0.209(3627)	non tumor-specific	exon_skip	yes
ELOB_LS013	chr16:2777127|2777237:-	ELOB	elongin B	protein coding gene	no	ENST00000262306.11;ENST00000409906.8;ENST00000572954.1	542.150	271.035	469.580	0.994(9519)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ZCRB1_LS002	chr12:42313765|42313874:-	ZCRB1	zinc finger CCHC-type and RNA binding motif containing 1	protein coding gene	no	ENST00000266529.7;ENST00000552673.5;ENST00000552235.1	238.048	128.119	110.494	0.997(9553)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC115522.1_UP_LS0002	chr19:43795901|43796256:-	AC115522.1	-	lncRNA gene	no	.	2.570	0.567	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EXTL3_LS0017	chr8:28690754|28697972:-	EXTL3	exostosin like glycosyltransferase 3	protein coding gene	yes	.	4.200	0.100	0.000	0.025(235)	0.003(2)	0(0)	non tumor-specific	nAS	no
ASAH1_LS019	chr8:18064531|18067250:-	ASAH1	N-acylsphingosine amidohydrolase 1	protein coding gene	no	ENST00000637603.1	69.502	41.276	0.972	0.005(46)	0.009(6)	0.501(8707)	non tumor-specific	alt_5prime	yes
RHBDD2_LS004	chr7:75879260|75881365:+	RHBDD2	rhomboid domain containing 2	protein coding gene	no	ENST00000318622.8;ENST00000454791.1;ENST00000468304.1	32.541	22.069	24.246	0.971(9304)	0.976(685)	0.978(16995)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RPS2_LS0003	chr16:1962152|1962186:+	RPS2	ribosomal protein S2	protein coding gene	no	.	100.383	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
CATSPERE_LS028	chr1:244593578|244605695:+	CATSPERE	catsper channel auxiliary subunit epsilon	protein coding gene	no	ENST00000473875.5;ENST00000366531.7;ENST00000366534.8;ENST00000366533.8;ENST00000428042.1	2.652	0.717	1.844	0.049(472)	0.117(82)	0.764(13282)	non tumor-specific	exon_skip	yes
UN_CLEC1A_LS0007	chr12:10079009|10081237:-	CLEC1A	C-type lectin domain family 1 member A	protein coding gene	no	.	1.915	0.387	0.000	0.008(77)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC007773.1_LS0001	chr19:32390333|32391116:-	AC007773.1	-	lncRNA gene	no	.	4.139	1.375	0.000	0.286(2744)	0.178(125)	0(0)	non tumor-specific	nAS	no
CREG1_LS002	chr1:167533397|167546101:-	CREG1	cellular repressor of E1A stimulated genes 1	protein coding gene	no	ENST00000466652.2	0.235	0.074	0.665	0.078(744)	0.095(67)	0.164(2847)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0058	chr6:31816907|31828853:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	91.370	25.488	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	nAS	no
TRAK1_LS019	chr3:42201054|42202436:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	ENST00000487159.5;ENST00000484786.5;ENST00000327628.9;ENST00000449246.5;ENST00000613405.4;ENST00000341421.7;ENST00000396175.5;ENST00000427771.1	50.222	40.625	37.217	0.994(9523)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
AC092902.2_LS012	chr3:125863113|125866083:-	AC092902.2	-	lncRNA gene	no	ENST00000616043.1	0.163	0.092	0.786	0.234(2246)	0.211(148)	0.271(4716)	non tumor-specific	nAS	yes
UN_ENPP7P4_LS0010	chr3:125848447|125908437:-	ENPP7P4	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4	pseudogene	no	.	2.608	0.112	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
PARP4_LS018	chr13:24459310|24459972:-	PARP4	poly(ADP-ribose) polymerase family member 4	protein coding gene	no	ENST00000381989.3	45.803	32.421	16.411	0.938(8983)	0.984(691)	0.971(16879)	non tumor-specific	nAS	yes
UN_ALCAM_LS0002	chr3:105503955|105504610:-	ALCAM	activated leukocyte cell adhesion molecule	protein coding gene	no	.	3.502	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_JPX_LS0008	chrX:73944662|73962731:+	JPX	JPX transcript, XIST activator	lncRNA gene	no	.	1.301	0.038	0.000	0.024(233)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RAI1_LS0032	chr17:17723600|17724028:+	RAI1	ribonuclease A family member 12 (inactive)	protein coding gene	no	.	1.576	0.604	0.000	0.147(1410)	0.078(55)	0(0)	non tumor-specific	alt_5prime	no
COL7A1_LS089	chr3:48582653|48583013:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000487017.5;ENST00000328333.12	10.907	2.562	7.063	0.595(5703)	0.42(295)	0.911(15841)	non tumor-specific	alt_3prime	yes
UN_SYN1_LS0076	chrX:47586638|47586675:-	SYN1	synapsin I	protein coding gene	no	.	186.455	2.440	0.000	0.008(75)	0.004(3)	0(0)	non tumor-specific	nAS	no
CCDC12_LS027	chr3:46978297|46979474:-	CCDC12	coiled-coil domain containing 12	protein coding gene	no	.;.	0.891	0.595	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MAN2B2_LS0032	chr4:6605329|6605954:+	MAN2B2	mannosidase alpha class 2B member 2	protein coding gene	no	.	3.366	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TMEM147_LS004	chr19:35546585|35547119:+	TMEM147	transmembrane protein 147	protein coding gene	no	ENST00000593027.6	0.413	0.202	0.835	0.935(8959)	0.947(665)	0.365(6351)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TXNDC12_LS0013	chr1:52028630|52032193:-	TXNDC12	thioredoxin domain containing 12	protein coding gene	no	.	4.359	0.179	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZFP69B_LS003	chr1:40451088|40454203:+	ZFP69B	ZFP69 zinc finger protein B	protein coding gene	no	ENST00000469416.1;ENST00000411995.6;ENST00000361584.4	1.237	0.405	0.957	0.505(4841)	0.319(224)	0.414(7188)	non tumor-specific	exon_skip	yes
UN_HERC1_LS0064	chr15:63659574|63659736:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	.	0.786	0.154	0.000	0.007(66)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_LENG8_LS0007	chr19:54454588|54454610:+	LENG8	leukocyte receptor cluster member 8	protein coding gene	no	.	12.827	0.885	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
AMPD2_LS010	chr1:109621266|109625662:+	AMPD2	adenosine monophosphate deaminase 2	protein coding gene	no	ENST00000358729.8;ENST00000486282.6	0.035	0.785	1.668	0.518(4959)	0.62(435)	0.594(10328)	non tumor-specific	exon_skip	yes
NTF4_LS001	chr19:49062009|49063734:-	NTF4	neurotrophin 4	protein coding gene	no	.;.	2.295	0.457	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TBC1D2_LS0033	chr9:98213218|98220151:-	TBC1D2	TBC1 domain family member 2	protein coding gene	no	.	1.619	0.467	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_AC009262.1_UP_LS0011	chr7:34197926|34198294:+	AC009262.1	-	lncRNA gene	no	.	2.246	0.122	0.000	0.025(243)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAP1GAP2_LS002	chr17:2770445|2800515:+	RAP1GAP2	RAP1 GTPase activating protein 2	protein coding gene	no	ENST00000637138.1	1.548	0.870	1.980	0.024(229)	0.04(28)	0.165(2872)	non tumor-specific	nAS	yes
UN_SCO1_LS0010	chr17:10681015|10681214:-	SCO1	synthesis of cytochrome C oxidase 1	protein coding gene	no	.	3.456	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_RGL3_LS0016	chr19:11395128|11397244:-	RGL3	ral guanine nucleotide dissociation stimulator like 3	protein coding gene	no	.	10.046	0.450	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
LYRM1_LS018	chr16:20902717|20920122:+	LYRM1	LYR motif containing 1	protein coding gene	no	ENST00000562740.5	0.155	0.121	2.071	0.763(7312)	0.845(593)	0.835(14518)	non tumor-specific	exon_skip	yes
BCAS3_LS034	chr17:61002727|61003800:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	ENST00000587037.5	0.034	0.007	0.654	0.004(40)	0.006(4)	0.003(58)	non tumor-specific	nAS	yes
HTT_LS078	chr4:3228745|3228880:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10;ENST00000510626.5;ENST00000513806.1	49.233	31.311	28.374	0.988(9462)	0.996(699)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_RBPMS_LS0051	chr8:30542450|30544494:+	RBPMS	RNA binding protein, mRNA processing factor	protein coding gene	no	.	0.999	0.318	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
UN_TXNDC15_LS0019	chr5:134900459|134900999:+	TXNDC15	thioredoxin domain containing 15	protein coding gene	no	.	13.922	2.529	0.000	0.019(181)	0.016(11)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
SIN3B_LS025	chr19:16876578|16877545:+	SIN3B	SIN3 transcription regulator family member B	protein coding gene	no	ENST00000248054.9;ENST00000379803.5;ENST00000595541.1;ENST00000595049.5;ENST00000248054.9;ENST00000379803.5;ENST00000595541.1;ENST00000595049.5	35.984	23.608	59.953	0.988(9463)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
SOX5_LS035	chr12:24277312|24368563:-	SOX5	SRY-box transcription factor 5	protein coding gene	no	ENST00000646273.1;ENST00000446891.7;ENST00000429944.6	1.871	1.011	2.040	0.203(1949)	0.457(321)	0.656(11407)	non tumor-specific	nAS	yes
AC107953.2_LS001	chr8:119063240|119067674:-	AC107953.2	-	lncRNA gene	no	ENST00000518362.1	0.093	0.033	0.944	0.016(158)	0.034(24)	0.072(1254)	non tumor-specific	nAS	yes
UN_PAXBP1_LS0021	chr21:32759269|32759471:-	PAXBP1	PAX3 and PAX7 binding protein 1	protein coding gene	no	.	4.467	0.466	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_TRIOBP_LS0071	chr22:37745540|37746045:-	TRIOBP	TRIO and F-actin binding protein	protein coding gene	no	.	1.354	0.261	0.000	0.005(51)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL022100.1_UP_LS0002	chr1:168202076|168287141:+	AL022100.1	-	pseudogene	no	.	1.911	0.861	0.000	0.051(493)	0.078(55)	0(0)	non tumor-specific	nAS	no
UN_BCRP2_LS0006	chr22:21118949|21121931:+	BCRP2	DDB1 and CUL4 associated factor 5	pseudogene	no	.	3.193	0.421	0.000	0.019(184)	0.017(12)	0(0)	non tumor-specific	nAS	no
C12orf75_LS014	chr12:105367509|105370634:+	C12orf75	chromosome 12 open reading frame 75	protein coding gene	no	ENST00000548458.6;ENST00000612117.4;ENST00000443585.5;ENST00000552457.1;ENST00000549934.2;ENST00000548336.1	149.243	69.469	34.884	0.981(9400)	0.987(693)	0.976(16959)	non tumor-specific	nAS	yes
UN_UBE2Q2_LS0015	chr15:75873568|75874825:+	UBE2Q2	ubiquitin conjugating enzyme E2 Q2	protein coding gene	no	.	3.075	0.314	0.000	0.011(103)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
PIGN_LS073	chr18:62162512|62163531:-	PIGN	phosphatidylinositol glycan anchor biosynthesis class N	protein coding gene	no	ENST00000593225.1	0.045	0.058	0.633	0.141(1349)	0.134(94)	0.046(804)	non tumor-specific	alt_3prime	yes
FSD1_LS011	chr19:4311879|4323572:+	FSD1	fibronectin type III and SPRY domain containing 1	protein coding gene	no	ENST00000597480.1	0.408	0.076	0.970	0.092(877)	0.011(8)	0.051(888)	non tumor-specific	nAS	yes
FABP6_LS002	chr5:160199157|160213736:+	FABP6	fatty acid binding protein 6	protein coding gene	no	ENST00000393980.8	1.475	2.340	1.291	0.192(1843)	0.189(133)	0.143(2488)	non tumor-specific	exon_skip	yes
RABAC1_LS004	chr19:41957119|41958286:-	RABAC1	Rab acceptor 1	protein coding gene	no	ENST00000600292.5;ENST00000222008.10;ENST00000601078.5;ENST00000596171.1	490.251	277.289	435.622	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC007192.1_LS0154	chr19:18177764|18177855:+	AC007192.1	-	protein coding gene	no	.	232.943	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EIF3H_LS0044	chr8:116679033|116679952:+	EIF3H	eukaryotic translation initiation factor 3 subunit H	protein coding gene	no	.	1.223	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CGNL1_UP_LS0002	chr15:57323932|57324850:+	CGNL1	cingulin like 1	protein coding gene	no	.	11.068	0.766	0.000	0.011(110)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COMTD1_LS0019	chr10:75235178|75235417:-	COMTD1	catechol-O-methyltransferase domain containing 1	protein coding gene	no	.	7.283	0.598	0.000	0.006(57)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
FSTL3_LS010	chr19:680879|681333:+	FSTL3	follistatin like 3	protein coding gene	no	ENST00000592947.5;ENST00000591573.1	0.825	0.473	1.423	0.705(6752)	0.694(487)	0.699(12142)	non tumor-specific	alt_5prime	yes
COL8A1_LS015	chr3:99745021|99794230:+	COL8A1	collagen type VIII alpha 1 chain	protein coding gene	no	.;.	1.099	0.048	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC115_LS005	chr2:130339762|130340908:-	CCDC115	coiled-coil domain containing 115	protein coding gene	no	ENST00000442217.5	4.339	2.970	3.785	0.891(8537)	0.823(578)	0.931(16191)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SCG3_LS014	chr15:51701244|51713333:+	SCG3	sarcoglycan gamma	protein coding gene	no	ENST00000220478.7;ENST00000542355.6;ENST00000220478.7;ENST00000542355.6	97.923	26.750	2.898	0.223(2136)	0.255(179)	0.564(9810)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SYT7_UP_LS0008	chr11:61649863|61653727:-	SYT7	synaptotagmin 7	protein coding gene	no	.	1.721	1.224	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC011451.1_LS0003	chr19:9291903|9293180:+	AC011451.1	-	lncRNA gene	no	.	0.516	0.095	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LIFR_LS0035	chr5:38588330|38595261:-	LIFR	LIF receptor subunit alpha	protein coding gene	yes	.	1.006	4.042	0.000	0.002(18)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_RNU6-563P_UP_LS0003	chr20:47500951|47501569:-	RNU6-563P	RNA, U6 small nuclear 563, pseudogene	small non-coding RNA gene	no	.	2.514	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
MYB_LS004	chr6:135187905|135189791:+	MYB	MYB proto-oncogene, transcription factor	protein coding gene	yes	ENST00000618728.4;ENST00000463282.6;ENST00000525477.5;ENST00000533837.5;ENST00000339290.9;ENST00000341911.9;ENST00000367812.6;ENST00000616088.4;ENST00000316528.12;ENST00000442647.6;ENST00000367814.8;ENST00000527615.5;ENST00000525369.5;ENST00000528140.5;ENST00000528774.5;ENST00000534121.5;ENST00000525940.5;ENST00000534044.5;ENST00000533624.5;ENST00000529262.5;ENST00000528015.5;ENST00000526187.5;ENST00000533384.5;ENST00000531634.5;ENST00000531737.5;ENST00000525002.5;ENST00000526565.5;ENST00000528343.5;ENST00000438901.6;ENST00000525514.5;ENST00000531519.5;ENST00000526320.5;ENST00000526889.5;ENST00000533808.5;ENST00000529586.5;ENST00000531845.5;ENST00000430686.2	18.709	6.421	1.953	0.56(5365)	0.513(360)	0.45(7817)	non tumor-specific	exon_skip	yes
UN_AL512343.2_UP_LS0013	chr1:226122746|226123487:-	AL512343.2	-	lncRNA gene	no	.	1.263	1.140	0.000	0.001(12)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_GAPDH_LS0259	chr12:6537996|6538125:+	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	217.408	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_ALDH4A1_LS0001	chr1:18871608|18871688:+	ALDH4A1	aldehyde dehydrogenase 4 family member A1	protein coding gene	no	.	4.676	2.084	0.000	0.004(36)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_DMAC1_LS0018	chr9:7799658|7799695:+	DMAC1	distal membrane arm assembly complex 1	protein coding gene	no	.	12.999	1.399	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC114781.4_UP_LS0003	chr4:83453945|83463494:-	AC114781.4	-	pseudogene	no	.	1.415	0.706	0.000	0.033(316)	0.058(41)	0(0)	non tumor-specific	nAS	no
UN_SVIL-AS1_LS0020	chr10:29420661|29482833:+	SVIL-AS1	SVIL antisense RNA 1	pseudogene	no	.	4.213	1.578	0.000	0.008(81)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_SPI1_LS0011	chr11:47355072|47355311:-	SPI1	Spi-1 proto-oncogene	protein coding gene	yes	.	6.173	1.739	0.000	0.028(271)	0.02(14)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_CENPU_LS0019	chr4:184730968|184733296:-	CENPU	centromere protein U	protein coding gene	no	.	0.758	0.209	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_ALG10_LS0002	chr12:34022566|34023962:+	ALG10	ALG10 alpha-1,2-glucosyltransferase	protein coding gene	no	.	0.250	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AC010325.2_LS001	chr19:50792791|50793432:-	AC010325.2	-	lncRNA gene	no	ENST00000594114.1	0.149	0.024	0.681	0.014(130)	0.004(3)	0.004(63)	non tumor-specific	nAS	yes
UN_USB1_LS0038	chr16:58020431|58020600:-	USB1	U6 snRNA biogenesis phosphodiesterase 1	protein coding gene	no	.	3.429	0.171	0.000	0.009(83)	0.004(3)	0(0)	non tumor-specific	nAS	no
LAIR1_LS009	chr19:54356966|54359843:-	LAIR1	leukocyte associated immunoglobulin like receptor 1	protein coding gene	no	ENST00000440716.5	0.036	0.214	0.808	0.244(2342)	0.234(164)	0.151(2620)	non tumor-specific	alt_5prime;exon_skip	yes
ALKBH5_LS004	chr17:18206970|18208219:+	ALKBH5	alkB homolog 5, RNA demethylase	protein coding gene	no	ENST00000541285.1;ENST00000399138.4;ENST00000490106.1	161.239	119.611	79.292	0.988(9463)	0.99(695)	0.979(17021)	non tumor-specific	exon_skip	yes
C16orf87_LS001	chr16:46803070|46807969:-	C16orf87	chromosome 16 open reading frame 87	protein coding gene	no	ENST00000565112.1	0.030	0.002	0.640	0.029(282)	0.023(16)	0.01(176)	non tumor-specific	exon_skip;mutex_exons	yes
MYL10_LS007	chr7:101624021|101624172:-	MYL10	myosin light chain 10	protein coding gene	no	ENST00000223167.4	0.415	0.000	0.712	0.004(34)	0(0)	0.006(107)	non tumor-specific	nAS	yes
UN_CECR2_LS0013	chr22:17542838|17548148:+	CECR2	CECR2 histone acetyl-lysine reader	protein coding gene	no	.	1.281	0.361	0.000	0.008(81)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_XYLB_LS0036	chr3:38414875|38419842:+	XYLB	xylulokinase	protein coding gene	no	.	3.079	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATP6V0A1_LS0026	chr17:42514690|42521027:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	.	2.502	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PYY2_LS002	chr17:28227493|28227608:+	PYY2	peptide YY 2 (pseudogene)	pseudogene	no	ENST00000315776.4	0.305	0.654	0.772	0.143(1367)	0.038(27)	0.077(1336)	non tumor-specific	nAS	yes
SEL1L3_LS032	chr4:25847864|25860601:-	SEL1L3	SEL1L family member 3	protein coding gene	no	ENST00000510880.1	0.045	0.013	0.774	0.185(1770)	0.165(116)	0.042(736)	non tumor-specific	nAS	yes
DNMBP_LS001	chr10:99877336|99879811:-	DNMBP	dynamin binding protein	protein coding gene	no	ENST00000543621.6;ENST00000636706.1;ENST00000324109.8	33.589	27.879	18.379	0.98(9387)	0.991(696)	0.976(16971)	non tumor-specific	nAS	yes
UN_BAZ2A_LS0076	chr12:56612246|56613005:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	.	2.560	1.202	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_HNRNPC_LS0052	chr14:21216110|21230319:-	HNRNPC	heterogeneous nuclear ribonucleoprotein C	protein coding gene	no	.	0.341	0.007	0.000	0.017(167)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PAX4_LS013	chr7:127617400|127617962:-	PAX4	paired box 4	protein coding gene	yes	ENST00000639438.1	3.804	0.316	0.740	0.003(30)	0.001(1)	0.008(142)	non tumor-specific	nAS	yes
TAB3_LS018	chrX:30867549|30871699:-	TAB3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein coding gene	no	ENST00000378933.5;ENST00000378932.6;ENST00000467136.5;ENST00000288422.3	5.559	4.276	3.016	0.787(7537)	0.926(650)	0.891(15492)	non tumor-specific	exon_skip	yes
UN_TMEM131L_LS0043	chr4:153617794|153620756:+	TMEM131L	transmembrane 131 like	protein coding gene	no	.	1.043	0.056	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TRAF3_LS016	chr14:102891417|102897261:+	TRAF3	TNF receptor associated factor 3	protein coding gene	no	ENST00000560371.5;ENST00000347662.8;ENST00000392745.6;ENST00000351691.9;ENST00000559734.1	13.908	7.951	8.737	0.98(9389)	0.99(695)	0.974(16938)	non tumor-specific	exon_skip	yes
UN_B3GNT3_LS0009	chr19:17800735|17810260:+	B3GNT3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein coding gene	no	.	8.582	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC114737.1_UP_LS0001	chr7:77018887|77046785:-	AC114737.1	-	lncRNA gene	no	.	15.235	2.995	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
FAM192A_LS040	chr16:57174688|57185821:-	FAM192A	proteasome activator subunit 3 interacting protein 1	protein coding gene	no	ENST00000566584.5	0.004	0.007	1.150	0.805(7716)	0.791(555)	0.605(10520)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_DNMBP_LS0047	chr10:99929859|99955674:+	DNMBP	dynamin binding protein	protein coding gene	no	.	0.784	0.180	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC12_LS054	chr11:113368576|113383377:+	TTC12	tetratricopeptide repeat domain 12	protein coding gene	no	ENST00000393020.5	0.096	0.066	0.689	0.004(37)	0.004(3)	0.02(340)	non tumor-specific	nAS	yes
RRP1_LS020	chr21:43802387|43803512:+	RRP1	ribosomal RNA processing 1B	protein coding gene	no	ENST00000497547.1;ENST00000467112.5;ENST00000471909.1;ENST00000497547.1;ENST00000467112.5;ENST00000471909.1	39.285	14.087	31.800	0.967(9267)	0.964(677)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL606752.1_UP_LS0006	chr1:159520301|159534450:+	AL606752.1	-	pseudogene	no	.	1.551	1.035	0.000	0.007(64)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_SCRIB_LS0048	chr8:143792857|143803731:+	SCRIB	scribble planar cell polarity protein	protein coding gene	yes	.	0.540	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
STXBP5L_LS031	chr3:121413323|121415857:+	STXBP5L	syntaxin binding protein 5 like	protein coding gene	no	ENST00000273666.10;ENST00000471454.5;ENST00000471262.1	5.756	2.075	4.217	0.123(1179)	0.155(109)	0.307(5338)	non tumor-specific	nAS	yes
UN_PSMF1_LS0076	chr20:1166427|1180908:+	PSMF1	proteasome inhibitor subunit 1	protein coding gene	no	.	0.911	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AKR1A1_LS015	chr1:45568090|45568934:+	AKR1A1	aldo-keto reductase family 1 member A1	protein coding gene	no	ENST00000495913.5	0.045	0.061	1.342	0.889(8517)	0.883(620)	0.712(12370)	non tumor-specific	alt_5prime;mutex_exons	yes
UN_AC007966.1_LS0001	chr2:185729419|185731724:+	AC007966.1	-	lncRNA gene	no	.	2.121	0.042	0.000	0.031(300)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL590079.1_LS004	chr14:104287553|104287834:+	AL590079.1	-	lncRNA gene	no	ENST00000553757.1	0.265	0.216	0.758	0.035(338)	0.046(32)	0.037(638)	non tumor-specific	nAS	yes
UN_RPL13A_LS0077	chr19:49491827|49491850:-	RPL13A	ribosomal protein L13a	protein coding gene	no	.	40.036	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
KRT1_LS011	chr12:52677480|52677650:-	KRT1	keratin 1	protein coding gene	no	ENST00000252244.3	30.770	9.350	5.831	0.128(1227)	0.104(73)	0.86(14947)	non tumor-specific	alt_3prime	yes
UN_CLEC4GP1_LS0002	chr19:7787978|7788308:+	CLEC4GP1	C-type lectin domain family 4 member G pseudogene 1	pseudogene	no	.	3.090	1.437	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC011443.1_UP_LS0004	chr19:39193789|39201560:-	AC011443.1	-	lncRNA gene	no	.	2.376	0.809	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AQP7P3_UP_LS0003	chr9:65877641|65878741:+	AQP7P3	aquaporin 7 pseudogene 3	pseudogene	no	.	6.284	5.028	0.000	0.002(16)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_NDUFV1_LS0050	chr11:67611565|67611893:-	NDUFV1	NADH:ubiquinone oxidoreductase core subunit V1	protein coding gene	no	.	3.379	1.956	0.000	0.157(1504)	0.123(86)	0(0)	non tumor-specific	nAS	no
UN_HHLA2_LS0021	chr3:108369424|108376493:+	HHLA2	HERV-H LTR-associating 2	protein coding gene	no	.	3.423	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AL080317.3_UP_LS0002	chr6:111298625|111300557:+	AL080317.3	-	lncRNA gene	no	.	0.356	0.097	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HR_LS0023	chr8:22121416|22121613:-	HR	HR lysine demethylase and nuclear receptor corepressor	protein coding gene	no	.	2.256	0.785	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
EML3_LS009	chr11:62605180|62605642:-	EML3	EMAP like 3	protein coding gene	no	ENST00000394773.6;ENST00000394776.8;ENST00000278845.8;ENST00000460939.5;ENST00000531557.5;ENST00000494176.6;ENST00000529309.5;ENST00000494448.5;ENST00000483199.5;ENST00000524518.1	82.057	41.869	64.233	0.996(9544)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_EMC3_LS0076	chr3:9997383|9998455:+	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	.	0.560	0.111	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DBF4_LS0012	chr7:87888368|87896474:+	DBF4	DBF4 zinc finger	protein coding gene	no	.	1.496	0.000	0.000	0.007(65)	0(0)	0(0)	non tumor-specific	exon_skip	no
COL9A2_LS034	chr1:40314387|40315238:-	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	ENST00000488463.6;ENST00000496215.5;ENST00000461118.6	0.348	0.467	2.161	0.408(3911)	0.467(328)	0.641(11134)	non tumor-specific	alt_5prime;exon_skip	yes
PLEKHH1_LS037	chr14:67584124|67585568:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5;ENST00000561370.5;ENST00000558366.5;ENST00000559981.1;ENST00000561057.1	11.052	13.255	8.704	0.855(8194)	0.829(582)	0.881(15314)	non tumor-specific	exon_skip	yes
UN_AC073878.1_UP_LS0009	chr7:141656701|141659580:-	AC073878.1	-	lncRNA gene	no	.	3.398	0.925	0.000	0.023(216)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_AL354674.1_UP_LS0008	chr13:30063709|30072054:-	AL354674.1	-	lncRNA gene	no	.	1.418	2.381	0.000	0.002(16)	0.009(6)	0(0)	non tumor-specific	nAS	no
CLPB_LS005	chr11:72295648|72301803:-	CLPB	caseinolytic mitochondrial matrix peptidase chaperone subunit B	protein coding gene	no	ENST00000294053.8;ENST00000437826.6;ENST00000538039.5;ENST00000645105.1;ENST00000642187.1;ENST00000535990.5;ENST00000340729.9;ENST00000543042.6;ENST00000535477.6;ENST00000646359.1;ENST00000538021.5;ENST00000642288.1;ENST00000544382.5	36.083	17.366	10.915	0.994(9528)	0.996(699)	0.978(16995)	non tumor-specific	nAS	yes
SAA3P_LS002	chr11:18113287|18115986:-	SAA3P	serum amyloid A3, pseudogene	pseudogene	no	ENST00000534768.1	0.389	0.012	0.639	0.002(18)	0.001(1)	0.007(114)	non tumor-specific	nAS	yes
UN_PTPRA_LS0037	chr20:2999425|3005056:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	2.170	0.373	0.000	0.021(202)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
PTPRB_LS005	chr12:70534955|70536025:-	PTPRB	protein tyrosine phosphatase receptor type B	protein coding gene	no	ENST00000334414.10;ENST00000550358.5;ENST00000538708.5;ENST00000550857.5;ENST00000261266.9	16.725	25.179	30.290	0.815(7812)	0.956(671)	0.935(16256)	non tumor-specific	nAS	yes
PHACTR2_LS009	chr6:143753912|143755305:+	PHACTR2	phosphatase and actin regulator 2	protein coding gene	no	ENST00000397980.3	0.362	0.181	0.656	0.1(961)	0.158(111)	0.075(1298)	non tumor-specific	alt_3prime;intron_retention	yes
UN_XPOT_LS0017	chr12:64428120|64430052:+	XPOT	exportin for tRNA	protein coding gene	no	.	6.280	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CTPS2_LS011	chrX:16678450|16683094:-	CTPS2	CTP synthase 2	protein coding gene	no	ENST00000443824.5;ENST00000359276.8;ENST00000380241.7	29.652	14.586	11.079	0.984(9425)	0.997(700)	0.971(16881)	non tumor-specific	exon_skip	yes
UN_AC114814.2_UP_LS0020	chr2:235421276|235421626:-	AC114814.2	-	pseudogene	no	.	8.111	0.688	0.000	0.002(19)	0.019(13)	0(0)	non tumor-specific	nAS	no
PI4KB_LS016	chr1:151302298|151303541:-	PI4KB	phosphatidylinositol 4-kinase beta	protein coding gene	no	ENST00000368874.8;ENST00000368875.6;ENST00000368873.5;ENST00000529142.5;ENST00000368872.5;ENST00000430800.5	93.175	57.763	73.634	0.986(9445)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_HMGN1P19_UP_LS0013	chr7:46366125|46388549:+	HMGN1P19	high mobility group nucleosome binding domain 1 pseudogene 19	pseudogene	no	.	3.304	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC107884.1_LS017	chr11:7457959|7461239:-	AC107884.1	-	lncRNA gene	no	ENST00000530169.5;ENST00000504206.6	0.394	0.452	0.797	0.111(1062)	0.148(104)	0.239(4148)	non tumor-specific	nAS	yes
UN_VILL_LS0004	chr3:37988238|37993046:+	VILL	villin like	protein coding gene	no	.	1.629	1.180	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GAPVD1_LS0001	chr9:125261959|125287762:+	GAPVD1	GTPase activating protein and VPS9 domains 1	protein coding gene	no	.	1.216	0.215	0.000	0.012(117)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
PKM_LS006	chr15:72200655|72203022:-	PKM	pyruvate kinase M1/2	protein coding gene	no	ENST00000319622.10;ENST00000565184.5;ENST00000568883.5;ENST00000565154.5;ENST00000568459.5;ENST00000561609.5;ENST00000319622.10;ENST00000565184.5;ENST00000568883.5;ENST00000565154.5;ENST00000568459.5;ENST00000561609.5	11.957	42.555	70.584	0.967(9266)	0.94(660)	0.978(16993)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WHAMMP2_LS0001	chr15:28738559|28739105:+	WHAMMP2	WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2	pseudogene	no	.	2.114	0.106	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CYP4F11_LS0007	chr19:15924082|15924685:-	CYP4F11	cytochrome P450 family 4 subfamily F member 11	protein coding gene	no	.	5.948	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_PTMS_LS0038	chr12:6766540|6766598:-	PTMS	parathymosin	protein coding gene	no	.	1.943	0.815	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
P3H3_LS020	chr12:6834049|6837423:+	P3H3	prolyl 3-hydroxylase 3	protein coding gene	no	.;.	2.762	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01005_LS003	chr7:64029361|64029997:-	LINC01005	long intergenic non-protein coding RNA 1005	lncRNA gene	no	ENST00000649157.1;ENST00000451440.1	0.020	0.006	0.741	0.006(59)	0.007(5)	0.002(40)	non tumor-specific	nAS	yes
UN_CCDC92_LS0054	chr12:123944364|123971740:-	CCDC92	coiled-coil domain containing 92	protein coding gene	no	.	2.328	0.473	0.000	0.013(121)	0.04(28)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_SLC3A2_LS0073	chr11:62888546|62888583:-	SLC3A2	solute carrier family 3 member 2	protein coding gene	yes	.	6.761	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SDAD1_LS0016	chr4:75971458|75972169:-	SDAD1	SDA1 domain containing 1	protein coding gene	no	.	1.127	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPS8L2_LS0057	chr11:726991|727112:-	EPS8L2	EPS8 like 2	protein coding gene	no	.	2.007	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MUC17_LS039	chr7:101039628|101041573:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.;.;.	3.302	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MAST4_LS057	chr5:67145379|67149389:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11	0.169	0.391	1.187	0.123(1179)	0.298(209)	0.36(6258)	non tumor-specific	exon_skip	yes
UN_PERP_LS0016	chr6:138091131|138091216:+	PERP	p53 apoptosis effector related to PMP22	protein coding gene	no	.	1.175	0.307	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
CASC15_LS016	chr6:22063240|22110747:+	CASC15	cancer susceptibility 15	lncRNA gene	no	ENST00000444265.6;ENST00000636388.1	3.320	0.465	1.354	0.056(534)	0.073(51)	0.478(8316)	non tumor-specific	nAS	yes
EPS8L1_LS009	chr19:55079057|55079690:+	EPS8L1	EPS8 like 1	protein coding gene	no	ENST00000592824.5;ENST00000591219.5;ENST00000201647.10	21.566	17.316	11.697	0.676(6480)	0.866(608)	0.488(8489)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TOR1AIP2_LS0080	chr1:179869284|179877693:-	TOR1AIP2	torsin 1A interacting protein 2	protein coding gene	no	.	0.984	0.087	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DCAF6_LS022	chr1:168004793|168022988:+	DCAF6	DDB1 and CUL4 associated factor 6	protein coding gene	no	ENST00000367843.7;ENST00000367843.7	12.865	10.227	12.640	0.972(9308)	0.991(696)	0.972(16889)	non tumor-specific	alt_5prime;exon_skip	yes
GCNT1_LS010	chr9:76501931|76502239:+	GCNT1	glucosaminyl (N-acetyl) transferase 1	protein coding gene	no	ENST00000488136.5	1.373	1.080	0.863	0.09(864)	0.071(50)	0.093(1618)	non tumor-specific	exon_skip	yes
UN_SMC4_LS0026	chr3:160434503|160434556:+	SMC4	structural maintenance of chromosomes 4	protein coding gene	no	.	62.738	1.038	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TLE2_LS0043	chr19:3019343|3019699:-	TLE2	TLE family member 2, transcriptional corepressor	protein coding gene	no	.	2.538	0.234	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_FAM170A_UP_LS0001	chr5:119420813|119456315:+	FAM170A	family with sequence similarity 170 member A	protein coding gene	no	.	6.578	0.395	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FBXW5_LS0023	chr9:136940961|136941293:+	FBXW5	F-box and WD repeat domain containing 5	protein coding gene	no	.	1.215	1.096	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_UBXN11_LS0032	chr1:26286037|26301694:-	UBXN11	UBX domain protein 11	protein coding gene	no	.	1.886	0.178	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PREPL_LS034	chr2:44356368|44361380:-	PREPL	prolyl endopeptidase like	protein coding gene	no	ENST00000477410.1	0.021	0.009	0.672	0.015(148)	0.03(21)	0.013(232)	non tumor-specific	exon_skip	yes
PIEZO1_LS008	chr16:88716898|88717023:-	PIEZO1	piezo type mechanosensitive ion channel component 1	protein coding gene	no	ENST00000301015.14;ENST00000419505.5;ENST00000484567.6;ENST00000327397.8	106.941	62.146	115.668	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CDK4_LS021	chr12:57751736|57752175:-	CDK4	cyclin dependent kinase 4	protein coding gene	yes	ENST00000312990.10;ENST00000257904.10;ENST00000553237.5;ENST00000551888.5;ENST00000550419.5;ENST00000551706.1	18.698	13.597	66.720	0.986(9448)	0.99(695)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
FAM41C_LS002	chr1:868675|869528:-	FAM41C	family with sequence similarity 41 member C	lncRNA gene	no	ENST00000432963.1	2.682	0.074	0.729	0.014(132)	0.007(5)	0.021(373)	non tumor-specific	nAS	yes
MIR7515HG_LS006	chr2:6649325|6650106:-	MIR7515HG	MIR7515 host gene	lncRNA gene	no	ENST00000450467.1	0.580	0.000	0.697	0.001(6)	0(0)	0.001(19)	non tumor-specific	nAS	yes
UN_STIMATE_LS0021	chr3:52897327|52897559:-	STIMATE	STIM activating enhancer	protein coding gene	no	.	0.438	0.020	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
PROM1_LS009	chr4:15980537|15984263:-	PROM1	prominin 1	protein coding gene	no	ENST00000503884.5;ENST00000447510.6;ENST00000540805.5;ENST00000539194.5;ENST00000505450.5;ENST00000508167.5;ENST00000510224.5;ENST00000513946.1	46.589	49.384	5.196	0.604(5784)	0.838(588)	0.704(12245)	non tumor-specific	exon_skip	yes
CCDC18_LS005	chr1:93183495|93183978:+	CCDC18	coiled-coil domain containing 18	protein coding gene	no	ENST00000343253.11;ENST00000401026.7;ENST00000448243.5;ENST00000370276.5;ENST00000481180.5	0.833	0.429	1.090	0.359(3437)	0.189(133)	0.542(9416)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MFGE8_LS0117	chr15:88899811|88900657:-	MFGE8	milk fat globule EGF and factor V/VIII domain containing	protein coding gene	no	.	10.720	2.580	0.000	0.035(331)	0.048(34)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TCF25_LS054	chr16:89912645|89913232:+	TCF25	transcription factor 25	protein coding gene	no	ENST00000640279.1	0.521	0.321	4.850	0.794(7605)	0.764(536)	0.92(15984)	non tumor-specific	intron_retention	yes
UN_NQO2_LS0036	chr6:3001232|3002050:+	NQO2	N-ribosyldihydronicotinamide:quinone reductase 2	protein coding gene	no	.	1.145	0.039	0.000	0.014(130)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SSX7_LS005	chrX:52652984|52653404:-	SSX7	SSX family member 7	protein coding gene	no	ENST00000298181.5	1.995	0.000	0.601	0(4)	0(0)	0(8)	non tumor-specific	nAS	yes
RUNX1T1_LS011	chr8:91994623|92005116:-	RUNX1T1	RUNX1 partner transcriptional co-repressor 1	protein coding gene	yes	ENST00000520978.5	0.179	0.000	0.734	0.016(153)	0.063(44)	0.2(3482)	non tumor-specific	exon_skip	yes
PIGC_LS010	chr1:172397272|172399819:-	PIGC	phosphatidylinositol glycan anchor biosynthesis class C	protein coding gene	no	ENST00000484368.1	0.140	0.179	0.802	0.419(4017)	0.493(346)	0.405(7035)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AL669831.3_LS0277	chr1:630464|633961:-	AL669831.3	-	pseudogene	no	.	252.552	26.497	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	nAS	no
GOT1L1_LS002	chr8:37935215|37935704:-	GOT1L1	glutamic-oxaloacetic transaminase 1 like 1	protein coding gene	no	ENST00000307599.4;ENST00000518826.3	0.402	0.000	0.709	0.001(14)	0(0)	0.031(538)	non tumor-specific	nAS	yes
UN_ARHGEF37_LS0028	chr5:149620464|149621736:+	ARHGEF37	Rho guanine nucleotide exchange factor 37	protein coding gene	no	.	2.452	0.878	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_EVC2_LS0002	chr4:5563115|5564627:-	EVC2	EvC ciliary complex subunit 2	protein coding gene	no	.	1.633	0.211	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_INHBC_LS0002	chr12:57442214|57449277:+	INHBC	inhibin subunit beta C	protein coding gene	no	.	0.991	0.353	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
KIF3C_LS006	chr2:25930063|25951789:-	KIF3C	kinesin family member 3C	protein coding gene	no	ENST00000264712.7;ENST00000405914.1	15.721	14.978	7.337	0.921(8827)	0.907(637)	0.949(16489)	non tumor-specific	alt_3prime;exon_skip	yes
AC004980.1_LS002	chr7:76549858|76551463:+	AC004980.1	-	pseudogene	no	ENST00000429707.1	0.464	0.065	0.623	0.003(25)	0.004(3)	0.012(209)	non tumor-specific	nAS	yes
WDR33_LS004	chr2:127709856|127713583:-	WDR33	WD repeat domain 33	protein coding gene	no	ENST00000322313.8	49.993	27.352	21.736	0.995(9533)	0.996(699)	0.979(17009)	non tumor-specific	alt_5prime;exon_skip	yes
RPN1_LS008	chr3:128630143|128631948:-	RPN1	ribophorin I	protein coding gene	no	ENST00000296255.7;ENST00000497289.5	604.848	324.005	133.611	0.998(9564)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BX890604.2_LS0028	chrX:3818703|3822073:-	BX890604.2	-	lncRNA gene	no	.	2.735	0.740	0.000	0.064(615)	0.06(42)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
GNB1_LS024	chr1:1825499|1839190:-	GNB1	G protein subunit beta 1	protein coding gene	no	ENST00000615252.4;ENST00000378609.8;ENST00000439272.6;ENST00000434686.6;ENST00000472614.2	215.089	152.104	122.472	0.998(9564)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_LGALS7_UP_LS0010	chr19:38773514|38789618:-	LGALS7	galectin 7	protein coding gene	yes	.	0.550	0.069	0.000	0.032(308)	0.026(18)	0(0)	non tumor-specific	nAS	no
CACNA1C_LS032	chr12:2601960|2605081:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000335762.9;ENST00000399655.5;ENST00000480911.5;ENST00000399595.5;ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000399621.5;ENST00000399637.5;ENST00000399591.5;ENST00000399641.5;ENST00000347598.8;ENST00000399606.5;ENST00000399601.5;ENST00000344100.7;ENST00000399629.5;ENST00000327702.11;ENST00000399649.5;ENST00000402845.7;ENST00000399603.5;ENST00000399634.5;ENST00000399617.5;ENST00000406454.7	1.840	2.720	5.375	0.343(3285)	0.54(379)	0.848(14747)	non tumor-specific	alt_3prime	yes
UN_FLNA_LS0106	chrX:154348938|154349376:+	FLNA	filamin A	protein coding gene	yes	.	21.211	6.269	0.000	0.011(103)	0.001(1)	0(0)	non tumor-specific	nAS	no
PAFAH2_LS012	chr1:25988327|25989448:-	PAFAH2	platelet activating factor acetylhydrolase 2	protein coding gene	no	ENST00000374282.7;ENST00000374284.5;ENST00000439092.6;ENST00000441420.1	6.017	7.967	4.457	0.946(9066)	0.987(693)	0.937(16285)	non tumor-specific	alt_5prime;exon_skip	yes
TRPC5_LS006	chrX:111847436|111852298:-	TRPC5	transient receptor potential cation channel subfamily C member 5	protein coding gene	no	ENST00000262839.2	3.652	1.629	1.223	0.052(502)	0.013(9)	0.07(1215)	non tumor-specific	nAS	yes
UN_PWWP2A_LS0027	chr5:160108614|160112939:-	PWWP2A	PWWP domain containing 2A	protein coding gene	no	.	0.497	0.144	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_BANCR_LS0001	chr9:69296867|69297328:-	BANCR	BRAF-activated non-protein coding RNA	lncRNA gene	no	.	2.666	3.044	0.000	0.001(13)	0.066(46)	0(0)	non tumor-specific	nAS	no
UN_CA3_LS0008	chr8:85441815|85442105:-	CA3	carbonic anhydrase 3	protein coding gene	no	.	1.995	0.469	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CAPZB_LS0079	chr1:19484234|19485436:-	CAPZB	capping actin protein of muscle Z-line subunit beta	protein coding gene	no	.	4.582	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01739_LS004	chr1:63000803|63012334:-	LINC01739	long intergenic non-protein coding RNA 1739	lncRNA gene	no	ENST00000420659.1	0.081	0.123	0.864	0.006(58)	0.013(9)	0.001(11)	non tumor-specific	nAS	yes
NUP155_LS013	chr5:37309267|37310552:-	NUP155	nucleoporin 155	protein coding gene	no	ENST00000231498.7;ENST00000381843.6	23.031	8.157	7.542	0.96(9202)	0.974(684)	0.964(16752)	non tumor-specific	exon_skip	yes
FCRL3_LS013	chr1:157695625|157696040:-	FCRL3	Fc receptor like 3	protein coding gene	no	ENST00000492769.5	0.584	1.745	0.778	0.013(122)	0.009(6)	0.019(336)	non tumor-specific	alt_3prime	yes
UN_TBC1D3P5_UP_LS0001	chr17:27334377|27352490:+	TBC1D3P5	TBC1 domain family member 3 pseudogene 5	pseudogene	no	.	1.846	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ALYREF_LS0005	chr17:81888333|81888530:+	ALYREF	Aly/REF export factor	protein coding gene	no	.	2.046	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RHCE_LS0010	chr1:25402746|25428953:-	RHCE	Rh blood group CcEe antigens	protein coding gene	no	.	1.577	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
PRKAR2A-AS1_LS001	chr3:48848025|48848105:+	PRKAR2A-AS1	PRKAR2A antisense RNA 1	lncRNA gene	no	ENST00000435419.1;ENST00000431705.1	0.211	0.139	0.941	0.455(4357)	0.48(337)	0.477(8294)	non tumor-specific	nAS	yes
UN_AP2A1_UP_LS0003	chr19:49717970|49719457:+	AP2A1	adaptor related protein complex 2 subunit alpha 1	protein coding gene	no	.	1.432	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_B4GALNT4_LS0019	chr11:378143|378222:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	.	7.191	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
CRISP2_LS005	chr6:49697957|49698362:-	CRISP2	cysteine rich secretory protein 2	protein coding gene	no	ENST00000616725.4;ENST00000618917.4;ENST00000339139.4	3.837	3.817	1.200	0.068(649)	0.251(176)	0.288(5003)	non tumor-specific	nAS	yes
UN_STOM_LS0042	chr9:121353302|121353403:-	STOM	stomatin	protein coding gene	no	.	1.900	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC005779.2_LS001	chr19:45179942|45187331:+	AC005779.2	-	protein coding gene	no	ENST00000593083.1	0.372	0.031	0.778	0.015(142)	0.006(4)	0.284(4934)	non tumor-specific	nAS	yes
UN_RUSC1-AS1_LS0005	chr1:155319953|155321625:-	RUSC1-AS1	RUSC1 antisense RNA 1	lncRNA gene	no	.	0.437	0.098	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC083805.1_LS0024	chr12:57889909|57890313:+	AC083805.1	-	lncRNA gene	no	.	3.098	0.917	0.000	0.083(793)	0.047(33)	0(0)	non tumor-specific	nAS	no
UN_REXO2_UP_LS0002	chr11:114380556|114401698:+	REXO2	RNA exonuclease 2	protein coding gene	no	.	1.158	0.286	0.000	0.01(92)	0.013(9)	0(0)	non tumor-specific	nAS	no
EPB41L1_LS004	chr20:36092813|36113693:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	ENST00000373946.7;ENST00000452261.5	0.428	0.035	0.771	0.015(142)	0.03(21)	0.006(106)	non tumor-specific	exon_skip;mutex_exons	yes
MAG_LS005	chr19:35294290|35295613:+	MAG	myelin associated glycoprotein	protein coding gene	no	ENST00000600291.5	0.086	0.085	1.175	0.059(562)	0.009(6)	0.051(878)	non tumor-specific	exon_skip	yes
UN_AC128685.1_UP_LS0012	chr3:162914234|162930660:+	AC128685.1	-	lncRNA gene	no	.	6.864	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
SAP130_LS007	chr2:127955344|127986785:-	SAP130	splicing factor 3b subunit 3	protein coding gene	no	ENST00000259235.7	4.088	1.396	4.135	0.767(7353)	0.621(436)	0.95(16508)	non tumor-specific	exon_skip	yes
UN_HERC6_LS0021	chr4:88416079|88419302:-	HERC6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein coding gene	no	.	3.689	2.276	0.000	0.127(1219)	0.103(72)	0(0)	non tumor-specific	nAS	no
SEC14L5_LS008	chr16:4997044|5000655:+	SEC14L5	SEC14 like lipid binding 5	protein coding gene	no	ENST00000251170.11	3.127	2.297	1.410	0.095(909)	0.101(71)	0.439(7637)	non tumor-specific	nAS	yes
SLC34A2_LS008	chr4:25662612|25662708:+	SLC34A2	solute carrier family 34 member 2	protein coding gene	no	ENST00000645788.1;ENST00000513204.5;ENST00000504570.5;ENST00000503434.5	37.122	60.747	2.120	0.445(4264)	0.702(493)	0.226(3922)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SMYD5_LS009	chr2:73221234|73221826:+	SMYD5	SMYD family member 5	protein coding gene	no	ENST00000389501.8;ENST00000258100.8;ENST00000474652.1;ENST00000477038.1	25.984	14.371	31.151	0.993(9511)	0.993(697)	0.978(17002)	non tumor-specific	exon_skip	yes
UN_IFNA12P_UP_LS0001	chr9:21268956|21336621:+	IFNA12P	interferon alpha 12, pseudogene	pseudogene	no	.	13.374	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
ACBD7_LS003	chr10:15079040|15088306:-	ACBD7	acyl-CoA binding domain containing 7	protein coding gene	no	ENST00000496890.1	0.041	0.039	1.255	0.107(1023)	0.058(41)	0.066(1148)	non tumor-specific	nAS	yes
MRPL20_LS009	chr1:1402601|1405809:-	MRPL20	mitochondrial ribosomal protein L20	protein coding gene	no	ENST00000492508.1	0.439	0.137	5.452	0.954(9137)	0.959(673)	0.963(16737)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_CHRM3_UP_LS0013	chr1:239208329|239211832:+	CHRM3	cholinergic receptor muscarinic 3	protein coding gene	no	.	5.348	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC023157.2_UP_LS0005	chr12:31751353|31753148:-	AC023157.2	-	pseudogene	no	.	3.655	1.410	0.000	0.022(210)	0.044(31)	0(0)	non tumor-specific	nAS	no
DPY19L3_LS001	chr19:32405909|32408217:+	DPY19L3	dpy-19 like C-mannosyltransferase 3	protein coding gene	no	ENST00000587077.6;ENST00000592503.5;ENST00000392250.6;ENST00000586987.5	1.131	0.806	1.998	0.698(6685)	0.783(550)	0.79(13735)	non tumor-specific	nAS	yes
VAV3_LS038	chr1:107777296|107777670:-	VAV3	vav guanine nucleotide exchange factor 3	protein coding gene	yes	ENST00000469325.5	0.770	0.000	0.689	0.003(32)	0.001(1)	0.011(193)	non tumor-specific	exon_skip	yes
UN_NOX4_LS0012	chr11:89365073|89373432:-	NOX4	NADPH oxidase 4	protein coding gene	no	.	1.625	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
SLC2A5_LS003	chr1:9038506|9038828:-	SLC2A5	solute carrier family 2 member 5	protein coding gene	no	ENST00000377424.8;ENST00000487492.1	22.940	13.696	5.041	0.856(8202)	0.812(570)	0.882(15328)	non tumor-specific	exon_skip	yes
EPHX2_LS027	chr8:27541542|27543749:+	EPHX2	epoxide hydrolase 2	protein coding gene	no	ENST00000521400.5;ENST00000517536.5;ENST00000521780.5;ENST00000380476.7;ENST00000518379.5	85.376	151.650	47.822	0.952(9123)	0.997(700)	0.977(16980)	non tumor-specific	nAS	yes
UN_FBXL20_LS0045	chr17:39303639|39304815:-	FBXL20	F-box and leucine rich repeat protein 20	protein coding gene	no	.	1.825	0.088	0.000	0.02(193)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RIN2_LS0013	chr20:19799747|19886711:+	RIN2	Ras and Rab interactor 2	protein coding gene	no	.	0.839	0.279	0.000	0.007(66)	0.007(5)	0(0)	non tumor-specific	nAS	no
TANK_LS016	chr2:161160486|161161285:+	TANK	TRAF family member associated NFKB activator	protein coding gene	yes	ENST00000406287.5;ENST00000402568.5;ENST00000477952.1;ENST00000494976.1;ENST00000406287.5;ENST00000402568.5;ENST00000477952.1;ENST00000494976.1;ENST00000406287.5;ENST00000402568.5;ENST00000477952.1;ENST00000494976.1	0.498	0.205	2.514	0.894(8561)	0.903(634)	0.872(15161)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
CDKN3_LS003	chr14:54399912|54408745:+	CDKN3	cyclin dependent kinase inhibitor 3	protein coding gene	yes	ENST00000442975.6	0.366	0.307	0.657	0.259(2481)	0.046(32)	0.047(819)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
DPYD_LS020	chr1:97699547|97720825:-	DPYD	dihydropyrimidine dehydrogenase	protein coding gene	no	ENST00000474241.1	0.403	0.074	0.699	0.201(1927)	0.34(239)	0.116(2016)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SH3BP4_LS006	chr2:234978900|234979462:+	SH3BP4	SH3 domain binding protein 4	protein coding gene	no	ENST00000489601.1;ENST00000489601.1	0.297	0.259	0.852	0.216(2065)	0.345(242)	0.14(2428)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TNRC18_LS031	chr7:5376993|5377371:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	ENST00000399537.8;ENST00000430969.5;ENST00000413081.1	41.989	23.071	24.725	0.968(9276)	0.986(692)	0.977(16981)	non tumor-specific	exon_skip	yes
MUC3A_LS008	chr7:100965347|100965704:+	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	ENST00000379458.8;ENST00000483366.5;ENST00000414964.5	5.857	2.785	1.900	0.218(2085)	0.172(121)	0.46(7988)	non tumor-specific	nAS	yes
BUD31_LS016	chr7:99411186|99417429:+	BUD31	BUD31 homolog	protein coding gene	no	ENST00000456893.6	0.101	0.095	0.653	0.956(9164)	0.963(676)	0.049(853)	non tumor-specific	alt_3prime;exon_skip	yes
AC114956.2_LS001	chr5:43511299|43514193:+	AC114956.2	-	lncRNA gene	no	ENST00000512498.1	1.129	0.206	1.287	0.176(1688)	0.066(46)	0.608(10560)	non tumor-specific	nAS	yes
UN_HLA-F_UP_LS0003	chr6:29708511|29709869:+	HLA-F	major histocompatibility complex, class I, F	protein coding gene	no	.	2.987	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM86B3P_LS0024	chr8:8241962|8242316:+	FAM86B3P	family with sequence similarity 86 member B3, pseudogene	pseudogene	no	.	1.757	0.184	0.000	0.019(182)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MMP24OS_LS0008	chr20:35272145|35277721:-	MMP24OS	MMP24 opposite strand	protein coding gene	no	.	4.169	1.479	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC091906.1_LS001	chr5:9363423|9367348:+	AC091906.1	-	lncRNA gene	no	ENST00000511310.1	0.241	0.143	0.604	0.004(43)	0.004(3)	0.014(244)	non tumor-specific	nAS	yes
UN_KIFC3_LS0069	chr16:57788713|57790930:-	KIFC3	kinesin family member C3	protein coding gene	no	.	2.167	1.039	0.000	0.189(1814)	0.34(239)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_RTN4IP1_LS0004	chr6:106583420|106586895:-	RTN4IP1	reticulon 4 interacting protein 1	protein coding gene	yes	.	3.798	0.421	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	nAS	no
SNCAIP_LS040	chr5:122443685|122444106:+	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	.;.	0.778	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ASH1L_LS0061	chr1:155462599|155477886:-	ASH1L	ASH1 like histone lysine methyltransferase	protein coding gene	no	.	2.290	0.103	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_BAG4_LS0010	chr8:38209267|38210028:+	BAG4	BAG cochaperone 4	protein coding gene	no	.	2.590	0.410	0.000	0.006(58)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_SLC38A1_LS0028	chr12:46197162|46197720:-	SLC38A1	solute carrier family 38 member 1	protein coding gene	no	.	1.555	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_UBC_LS0313	chr12:124912427|124912611:+	UBC	ubiquitin C	protein coding gene	no	.	103.110	19.736	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MTND6P9_UP_LS0027	chr2:155814067|155906360:-	MTND6P9	MT-ND6 pseudogene 9	pseudogene	no	.	2.686	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM262_LS002	chr11:65088531|65088683:-	TMEM262	transmembrane protein 262	protein coding gene	no	ENST00000524632.1	0.382	0.584	0.678	0.004(43)	0.007(5)	0.006(101)	non tumor-specific	alt_5prime;intron_retention	yes
UN_FOXO3_LS0049	chr6:108683541|108683659:-	FOXO3	forkhead box O3	protein coding gene	yes	.	2.359	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BICDL1_LS0015	chr12:119999912|120014164:+	BICDL1	BICD family like cargo adaptor 1	protein coding gene	no	.	2.553	1.616	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_SON_LS0137	chr21:33552130|33552152:-	SON	SON DNA and RNA binding protein	protein coding gene	no	.	2.547	0.401	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
EDRF1_LS018	chr10:125735904|125737923:+	EDRF1	erythroid differentiation regulatory factor 1	protein coding gene	no	ENST00000368815.6	0.172	0.470	0.694	0.109(1040)	0.117(82)	0.198(3445)	non tumor-specific	alt_3prime	yes
UN_CCDC115_LS0020	chr2:130341944|130342011:-	CCDC115	coiled-coil domain containing 115	protein coding gene	no	.	2.578	1.131	0.000	0.011(105)	0.013(9)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AC013268.5_LS0003	chr2:109959850|109984104:+	AC013268.5	-	lncRNA gene	no	.	1.320	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DCAF1_LS0066	chr3:51490246|51492389:-	DCAF1	DDB1 and CUL4 associated factor 1	protein coding gene	no	.	0.809	0.258	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZFPM2-AS1_LS005	chr8:105785217|105787449:-	ZFPM2-AS1	ZFPM2 antisense RNA 1	lncRNA gene	no	ENST00000520594.5	0.392	0.003	0.770	0.291(2788)	0.107(75)	0.115(2000)	non tumor-specific	nAS	yes
UN_AC091153.4_UP_LS0003	chr17:4739636|4740026:-	AC091153.4	-	lncRNA gene	no	.	0.909	0.333	0.000	0.002(21)	0.01(7)	0(0)	non tumor-specific	nAS	no
DGKH_LS029	chr13:42198593|42199566:+	DGKH	diacylglycerol kinase eta	protein coding gene	no	ENST00000498255.6	1.588	0.074	0.620	0.003(29)	0.001(1)	0.032(548)	non tumor-specific	alt_5prime	yes
UN_GLYATL1_LS0052	chr11:58999689|59009693:-	GLYATL1	glycine-N-acyltransferase like 1	protein coding gene	no	.	2.219	0.261	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	nAS	no
NRG1-IT1_LS003	chr8:32029485|32061686:+	NRG1-IT1	NRG1 intronic transcript 1	lncRNA gene	no	ENST00000520444.5	0.841	0.000	0.723	0(1)	0(0)	0.001(17)	non tumor-specific	nAS	yes
AMT_LS021	chr3:49419393|49419710:-	AMT	aminomethyltransferase	protein coding gene	no	ENST00000636865.1	2.082	0.496	0.921	0.002(22)	0.003(2)	0.463(8056)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SRPK1_LS021	chr6:35891013|35920065:-	SRPK1	SRSF protein kinase 1	protein coding gene	no	ENST00000507909.1	0.254	0.099	0.877	0.356(3409)	0.439(308)	0.4(6956)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRAMD1B_LS0055	chr11:123591678|123594082:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	.	2.445	0.236	0.000	0.024(230)	0.017(12)	0(0)	non tumor-specific	alt_5prime	no
TRIP11_LS007	chr14:91977248|91988284:-	TRIP11	thyroid hormone receptor interactor 11	protein coding gene	no	ENST00000557017.1	0.927	0.415	1.047	0.201(1922)	0.363(255)	0.345(5995)	non tumor-specific	exon_skip	yes
ERBIN_LS036	chr5:66075230|66076316:+	ERBIN	erbb2 interacting protein	protein coding gene	no	ENST00000284037.9;ENST00000380943.6;ENST00000416865.6;ENST00000380938.6;ENST00000511297.5;ENST00000506030.5;ENST00000505822.1	37.779	27.558	29.666	0.981(9397)	0.987(693)	0.978(17003)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SMURF1_LS0056	chr7:99048023|99071540:+	SMURF1	SMAD specific E3 ubiquitin protein ligase 1	protein coding gene	yes	.	3.574	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
TCTN2_LS004	chr12:123672127|123673615:+	TCTN2	tectonic family member 2	protein coding gene	no	.;.	3.672	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
AL138902.1_LS001	chr1:24307780|24308178:-	AL138902.1	-	lncRNA gene	no	ENST00000437965.1	1.053	0.000	0.643	0(1)	0(0)	0.016(278)	non tumor-specific	nAS	yes
AC087457.1_LS003	chr15:34777431|34810496:+	AC087457.1	-	lncRNA gene	no	ENST00000503496.5	0.092	0.161	0.921	0.008(76)	0.001(1)	0.015(265)	non tumor-specific	nAS	yes
SERPINA12_LS008	chr14:94516154|94517401:-	SERPINA12	serpin family A member 12	protein coding gene	no	ENST00000341228.2	1.071	0.000	0.808	0.006(54)	0(0)	0.038(661)	non tumor-specific	nAS	yes
SVIL_LS039	chr10:29529844|29530607:-	SVIL	supervillin	protein coding gene	no	ENST00000375400.7;ENST00000375398.6;ENST00000355867.8	14.207	22.630	20.474	0.837(8022)	0.943(662)	0.944(16409)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNA5SP389_UP_LS0292	chr14:106606171|106872807:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	8.875	4.488	0.000	0.042(403)	0.07(49)	0(0)	non tumor-specific	nAS	no
GANC_LS004	chr15:42274044|42274168:+	GANC	glucosidase alpha, neutral C	protein coding gene	no	ENST00000566442.5	0.478	0.341	0.785	0.285(2732)	0.363(255)	0.394(6850)	non tumor-specific	alt_5prime;intron_retention	yes
UN_WWC2_LS0045	chr4:183300976|183312341:+	WWC2	WW and C2 domain containing 2	protein coding gene	no	.	4.551	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CES3_LS0027	chr16:66974876|66974927:-	CES3	carboxylesterase 3	protein coding gene	no	.	3.021	2.889	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
CDC42BPB_LS002	chr14:102938174|102938306:-	CDC42BPB	CDC42 binding protein kinase beta	protein coding gene	no	ENST00000361246.6	166.919	117.322	147.242	0.993(9510)	0.997(700)	0.978(17003)	non tumor-specific	alt_3prime	yes
TNFRSF14_LS009	chr1:2556261|2556585:+	TNFRSF14	TNF receptor superfamily member 14	protein coding gene	no	ENST00000409119.5	0.047	0.087	1.031	0.817(7828)	0.869(610)	0.397(6897)	non tumor-specific	alt_5prime	yes
AL161630.1_LS005	chr9:117655787|117656396:+	AL161630.1	-	lncRNA gene	no	ENST00000450938.1	2.249	0.662	0.976	0.075(723)	0.093(65)	0.21(3642)	non tumor-specific	nAS	yes
UN_B4GALT1_LS0113	chr9:33112302|33112353:+	B4GALT1	beta-1,4-galactosyltransferase 1	protein coding gene	no	.	2.744	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BIRC6_LS077	chr2:32597968|32599739:+	BIRC6	baculoviral IAP repeat containing 6	protein coding gene	no	ENST00000421745.6;ENST00000471232.5	49.484	29.853	46.084	0.989(9475)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime	yes
STARD9_LS021	chr15:42673963|42674440:+	STARD9	StAR related lipid transfer domain containing 9	protein coding gene	no	ENST00000569419.1	1.341	0.652	1.369	0.025(240)	0.044(31)	0.471(8188)	non tumor-specific	exon_skip	yes
PTPN18_LS008	chr2:130358975|130369133:+	PTPN18	protein tyrosine phosphatase non-receptor type 18	protein coding gene	no	ENST00000483617.5	1.740	1.478	3.344	0.837(8018)	0.887(623)	0.88(15290)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EAF1_UP_LS0001	chr3:15341644|15343497:+	EAF1	Snf2 related CREBBP activator protein	protein coding gene	yes	.	3.356	1.100	0.000	0.014(135)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ASH1L_LS0086	chr1:155546523|155547487:+	ASH1L	ASH1 like histone lysine methyltransferase	protein coding gene	no	.	1.175	0.502	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYRF_LS026	chr11:61781329|61781573:+	MYRF	myelin regulatory factor	protein coding gene	no	ENST00000278836.9;ENST00000265460.9;ENST00000389602.4;ENST00000537318.5;ENST00000546247.1	26.238	25.829	5.219	0.69(6608)	0.719(505)	0.812(14117)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZFP62_LS0062	chr5:180860679|180861074:-	ZFP62	ZFP62 zinc finger protein	protein coding gene	no	.	1.023	0.086	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
ERCC2_LS026	chr19:45368743|45368930:-	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit	protein coding gene	no	ENST00000391945.9;ENST00000646507.1;ENST00000391944.7;ENST00000391941.6;ENST00000485403.6;ENST00000586131.6;ENST00000591309.5;ENST00000586441.1;ENST00000586856.1	25.841	14.411	13.466	0.977(9358)	0.99(695)	0.978(16993)	non tumor-specific	alt_3prime;exon_skip	yes
TYRO3_LS013	chr15:41570340|41570604:+	TYRO3	TYRO3 protein tyrosine kinase	protein coding gene	no	ENST00000559066.5;ENST00000263798.7	21.022	17.827	14.286	0.845(8097)	0.843(592)	0.933(16220)	non tumor-specific	nAS	yes
ALDH1B1_LS002	chr9:38392807|38395740:+	ALDH1B1	aldehyde dehydrogenase 1 family member B1	protein coding gene	no	ENST00000377698.3	20.553	20.027	9.831	0.901(8635)	0.92(646)	0.939(16314)	non tumor-specific	nAS	yes
UN_AC090630.1_UP_LS0010	chr12:41979560|41987435:-	AC090630.1	-	lncRNA gene	no	.	6.030	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ARAF_LS017	chrX:47566911|47566986:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8	89.028	70.224	82.240	0.994(9523)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZFP91-CNTF_LS0016	chr11:58616815|58616993:+	ZFP91-CNTF	ZFP91-CNTF readthrough (NMD candidate)	protein coding gene	no	.	16.766	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
USP2-AS1_LS002	chr11:119381908|119395032:+	USP2-AS1	USP2 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000578923.1	0.684	0.547	0.687	0.024(231)	0.011(8)	0.047(823)	non tumor-specific	nAS	yes
UN_ARHGEF10_LS0041	chr8:1898525|1902219:+	ARHGEF10	Rho guanine nucleotide exchange factor 10	protein coding gene	no	.	1.039	0.153	0.000	0.008(74)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_TK1_LS0054	chr17:78174785|78175050:-	TK1	thymidine kinase 1	protein coding gene	no	.	4.884	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_GIPC2_LS0014	chr1:78025113|78080675:+	GIPC2	GIPC PDZ domain containing family member 2	protein coding gene	no	.	0.992	0.371	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
DHX57_LS017	chr2:38837947|38843005:-	DHX57	DExH-box helicase 57	protein coding gene	no	ENST00000457308.5;ENST00000452978.5;ENST00000622155.4;ENST00000620517.4	13.161	7.062	8.269	0.957(9169)	0.956(671)	0.967(16803)	non tumor-specific	exon_skip	yes
UN_ZC3H18_LS0010	chr16:88599946|88608934:+	ZC3H18	zinc finger CCCH-type containing 18	protein coding gene	no	.	10.396	0.438	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
MLPH_LS041	chr2:237540957|237542567:+	MLPH	melanophilin	protein coding gene	no	ENST00000410032.5;ENST00000264605.7;ENST00000468178.5;ENST00000338530.8;ENST00000464123.5;ENST00000478712.5;ENST00000437893.5;ENST00000432475.5;ENST00000434770.1	63.277	28.608	19.062	0.829(7944)	0.964(677)	0.858(14906)	non tumor-specific	alt_5prime;exon_skip	yes
LINC02541_LS001	chr6:113617423|113622881:-	LINC02541	long intergenic non-protein coding RNA 2541	lncRNA gene	no	ENST00000649523.1	2.227	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_SAV1_LS0006	chr14:50634660|50635214:-	SAV1	salvador family WW domain containing protein 1	protein coding gene	no	.	1.741	0.147	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL121845.3_LS0066	chr20:63736712|63736855:+	AL121845.3	-	protein coding gene	no	.	2.153	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CITED4_LS0028	chr1:40861401|40861481:+	CITED4	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4	protein coding gene	no	.	2.241	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC015910.1_UP_LS0005	chr17:39210234|39210982:+	AC015910.1	-	pseudogene	no	.	3.077	0.195	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC01926_LS0003	chr18:58827237|58828427:+	LINC01926	long intergenic non-protein coding RNA 1926	lncRNA gene	no	.	2.776	3.568	0.000	0.002(15)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SYMPK_LS0018	chr19:45816902|45817959:-	SYMPK	symplekin	protein coding gene	no	.	81.188	4.547	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLIT3_UP_LS0005	chr5:169312517|169374003:-	SLIT3	slit guidance ligand 3	protein coding gene	no	.	3.370	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ADSL_LS008	chr22:40350035|40354248:+	ADSL	adenylosuccinate lyase	protein coding gene	no	ENST00000623632.3	0.078	0.038	1.199	0.452(4329)	0.467(328)	0.642(11164)	non tumor-specific	exon_skip	yes
UN_RHPN2_LS0016	chr19:32986786|32990514:-	RHPN2	rhophilin Rho GTPase binding protein 2	protein coding gene	no	.	0.835	0.184	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_NUP98_LS0017	chr11:3702892|3704746:-	NUP98	nucleoporin 98 and 96 precursor	protein coding gene	yes	.	2.348	1.112	0.000	0.093(893)	0.157(110)	0(0)	non tumor-specific	exon_skip	no
UN_EPOR_LS0014	chr19:11382105|11383168:-	EPOR	erythropoietin receptor	protein coding gene	no	.	0.554	0.186	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AC012435.2_LS0008	chr15:74491582|74512392:+	AC012435.2	-	lncRNA gene	no	.	1.806	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TJAP1_LS0017	chr6:43503706|43504299:+	TJAP1	tight junction associated protein 1	protein coding gene	no	.	2.327	0.480	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
HSPG2_LS025	chr1:21833614|21833816:-	HSPG2	heparan sulfate proteoglycan 2	protein coding gene	no	ENST00000374695.7;ENST00000471322.2	132.525	104.025	150.122	0.992(9501)	0.991(696)	0.963(16736)	non tumor-specific	nAS	yes
UN_GRN_LS0167	chr17:44351746|44352523:-	GRN	granulin precursor	protein coding gene	no	.	32.025	0.746	0.000	0.012(112)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MMP14_LS0188	chr14:22846707|22846900:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	6.144	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AREL1_LS001	chr14:74653498|74656879:-	AREL1	apoptosis resistant E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000554070.1	0.948	0.000	0.700	0.001(7)	0(0)	0.038(669)	non tumor-specific	exon_skip	yes
UN_AC008763.2_LS0041	chr19:7641003|7641731:+	AC008763.2	-	protein coding gene	no	.	28.078	5.008	0.000	0.011(108)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_LINC00205_LS0010	chr21:45288244|45288976:+	LINC00205	long intergenic non-protein coding RNA 205	no	no	.	1.191	0.303	0.000	0.058(559)	0.051(36)	0(0)	non tumor-specific	nAS	no
C3orf58_LS006	chr3:143973255|143985543:+	C3orf58	divergent protein kinase domain 2A	protein coding gene	no	ENST00000492452.2	0.096	0.073	0.638	0.034(321)	0.036(25)	0.016(276)	non tumor-specific	nAS	yes
COG1_LS013	chr17:73206262|73206708:+	COG1	component of oligomeric golgi complex 1	protein coding gene	no	ENST00000618996.4;ENST00000299886.8;ENST00000438720.7;ENST00000580271.5;ENST00000582512.5;ENST00000577238.1;ENST00000582672.1	71.344	40.248	70.397	0.997(9552)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;intron_retention	yes
UN_MEGF8_LS0018	chr19:42348472|42349529:+	MEGF8	multiple EGF like domains 8	protein coding gene	no	.	1.348	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GIGYF2_LS052	chr2:232788590|232790698:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	ENST00000410033.1;ENST00000458528.1	0.009	0.009	0.691	0.521(4989)	0.631(443)	0.002(40)	non tumor-specific	nAS	yes
Z83839.2_LS001	chr22:32141339|32143072:+	Z83839.2	-	lncRNA gene	no	ENST00000436294.1	0.041	0.017	0.821	0.033(314)	0.023(16)	0.001(21)	non tumor-specific	nAS	yes
PLXNA3_LS031	chrX:154468969|154469056:+	PLXNA3	plexin A3	protein coding gene	no	ENST00000369682.4;ENST00000491066.1	30.920	9.852	40.579	0.976(9355)	0.934(656)	0.977(16990)	non tumor-specific	nAS	yes
GPKOW_LS008	chrX:49119814|49122398:-	GPKOW	G-patch domain and KOW motifs	protein coding gene	no	ENST00000156109.6	57.175	33.978	25.194	0.995(9529)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
UN_SON_LS0191	chr21:33553990|33554039:-	SON	SON DNA and RNA binding protein	protein coding gene	no	.	4.870	0.975	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
CYP2A6_LS002	chr19:40844772|40845294:-	CYP2A6	cytochrome P450 family 2 subfamily A member 6	protein coding gene	no	ENST00000301141.9	110.156	379.013	1.002	0.09(866)	0.288(202)	0.254(4409)	non tumor-specific	alt_3prime;intron_retention;mutex_exons	yes
CORO1B_LS011	chr11:67440439|67441333:-	CORO1B	coronin 1B	protein coding gene	no	.;.	16.431	0.453	0.000	0.01(96)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MAP2K6_LS0025	chr17:69502685|69504459:+	MAP2K6	mitogen-activated protein kinase kinase 6	protein coding gene	no	.	0.535	0.235	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LPCAT4_LS009	chr15:34360209|34362196:-	LPCAT4	lysophosphatidylcholine acyltransferase 4	protein coding gene	no	ENST00000567507.1;ENST00000567507.1	6.960	3.000	5.697	0.938(8985)	0.903(634)	0.951(16534)	non tumor-specific	alt_3prime;exon_skip	yes
ABHD2_LS013	chr15:89104270|89106270:+	ABHD2	abhydrolase domain containing 2, acylglycerol lipase	protein coding gene	no	ENST00000565825.5	0.022	0.039	0.658	0.048(457)	0.044(31)	0.01(169)	non tumor-specific	alt_5prime;exon_skip	yes
TLL2_LS006	chr10:96379092|96384587:-	TLL2	tolloid like 2	protein coding gene	no	ENST00000357947.3	2.313	0.221	0.872	0.033(315)	0.009(6)	0.113(1962)	non tumor-specific	nAS	yes
DYNC2LI1_LS015	chr2:43794643|43795890:+	DYNC2LI1	dynein cytoplasmic 2 light intermediate chain 1	protein coding gene	no	ENST00000260605.12;ENST00000479242.5;ENST00000489222.6;ENST00000378587.3	21.758	13.894	16.053	0.988(9469)	0.996(699)	0.959(16665)	non tumor-specific	alt_3prime;exon_skip	yes
NOTCH2_LS033	chr1:119997332|120005329:-	NOTCH2	notch receptor 2	protein coding gene	yes	ENST00000256646.6;ENST00000479412.2;ENST00000579475.7;ENST00000602566.5	7.990	7.247	6.888	0.821(7869)	0.936(657)	0.92(15987)	non tumor-specific	exon_skip	yes
NEK3_LS012	chr13:52144891|52148415:-	NEK3	NIMA related kinase 3	protein coding gene	no	ENST00000620675.4;ENST00000611833.4;ENST00000610828.4;ENST00000618534.4;ENST00000617054.1;ENST00000551355.5	11.045	6.459	16.832	0.923(8840)	0.97(681)	0.975(16947)	non tumor-specific	exon_skip	yes
SLC4A10_LS044	chr2:161976876|161983179:+	SLC4A10	solute carrier family 4 member 10	protein coding gene	no	ENST00000272716.9	5.115	0.456	1.607	0.08(765)	0.046(32)	0.204(3551)	non tumor-specific	exon_skip	yes
UN_COL1A2_LS0057	chr7:94416510|94420557:-	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	.	0.617	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
NDUFA6-DT_LS032	chr22:42136714|42137027:+	NDUFA6-DT	NDUFA6 divergent transcript	lncRNA gene	no	ENST00000439129.5;ENST00000621190.1	8.207	6.798	1.018	0.687(6585)	0.842(591)	0.428(7445)	non tumor-specific	nAS	yes
UN_AGO2_LS0027	chr8:140585311|140591112:-	AGO2	argonaute RISC catalytic component 2	protein coding gene	no	.	0.835	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_ZNF473_LS0012	chr19:50041978|50044632:-	ZNF473	zinc finger protein 473	protein coding gene	no	.	2.077	1.172	0.000	0.004(43)	0.013(9)	0(0)	non tumor-specific	nAS	no
PQLC2L_LS003	chr3:157553340|157569307:+	PQLC2L	solute carrier family 66 member 1 like	protein coding gene	no	ENST00000468043.5	1.924	1.292	4.197	0.524(5017)	0.742(521)	0.755(13125)	non tumor-specific	exon_skip	yes
UN_NPSR1-AS1_LS0012	chr7:34569861|34655186:-	NPSR1-AS1	NPSR1 antisense RNA 1	lncRNA gene	no	.	2.493	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SCARB2_LS015	chr4:76179705|76180954:-	SCARB2	scavenger receptor class B member 2	protein coding gene	no	ENST00000264896.7;ENST00000639300.1;ENST00000638295.1;ENST00000640640.1;ENST00000638603.1;ENST00000639145.1;ENST00000638663.1;ENST00000638372.1;ENST00000640957.1;ENST00000639324.1;ENST00000640916.1	125.216	100.553	51.773	0.992(9506)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
AGL_LS017	chr1:99876597|99877641:+	AGL	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein coding gene	no	ENST00000361915.7;ENST00000294724.8;ENST00000370165.7;ENST00000370163.7;ENST00000361302.7;ENST00000370161.6;ENST00000637337.1	9.074	9.972	5.809	0.793(7593)	0.95(667)	0.912(15844)	non tumor-specific	nAS	yes
SBDS_LS004	chr7:66993417|66994220:-	SBDS	SBDS ribosome maturation factor	protein coding gene	no	ENST00000414306.5;ENST00000490953.5;ENST00000463579.1	6.892	7.294	0.755	0.878(8414)	0.947(665)	0.297(5161)	non tumor-specific	alt_5prime;exon_skip	yes
CNOT1_LS017	chr16:58532395|58534147:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	ENST00000317147.9;ENST00000569240.5;ENST00000567188.5;ENST00000568917.1	125.340	74.302	83.173	0.991(9495)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_EPHB6_LS0009	chr7:142861186|142862085:+	EPHB6	EPH receptor B6	protein coding gene	yes	.	1.549	0.419	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAJB5_LS010	chr9:34992986|34993200:+	DNAJB5	DnaJ heat shock protein family (Hsp40) member B5	protein coding gene	no	ENST00000443266.2	0.135	0.156	1.169	0.302(2896)	0.353(248)	0.328(5694)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_GOLM1_LS0029	chr9:86027893|86032008:-	GOLM1	golgi membrane protein 1	protein coding gene	no	.	2.038	1.544	0.000	0.019(180)	0.03(21)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
CYP19A1_LS022	chr15:51323924|51338495:-	CYP19A1	cytochrome P450 family 19 subfamily A member 1	protein coding gene	no	ENST00000396404.8	0.524	0.000	0.365	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_CUBN_LS0029	chr10:16954548|16963927:-	CUBN	cubilin	protein coding gene	no	.	1.512	0.011	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
GAA_LS011	chr17:80108409|80108489:+	GAA	glucosidase alpha, acid	protein coding gene	no	ENST00000390015.7;ENST00000302262.7	128.541	87.515	44.057	0.989(9476)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AP002990.1_LS0011	chr11:62559727|62560097:+	AP002990.1	-	protein coding gene	no	.	51.317	20.476	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_FGFRL1_UP_LS0006	chr4:1005989|1007614:+	FGFRL1	fibroblast growth factor receptor like 1	protein coding gene	no	.	4.003	0.505	0.000	0.094(897)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_ATP1A1_LS0076	chr1:116393046|116393531:+	ATP1A1	ATPase Na+/K+ transporting subunit alpha 1	protein coding gene	no	.	144.638	35.259	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
HNF1A_LS008	chr12:120993626|120996604:+	HNF1A	HNF1 homeobox A	protein coding gene	no	ENST00000543427.5	0.104	0.000	0.651	0.002(22)	0.001(1)	0(3)	non tumor-specific	nAS	yes
UN_PAK1IP1_LS0020	chr6:10707514|10708957:+	PAK1IP1	PAK1 interacting protein 1	protein coding gene	no	.	12.154	1.148	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PEX5_UP_LS0011	chr12:7128494|7130580:+	PEX5	peroxisomal biogenesis factor 5	protein coding gene	no	.	1.154	0.193	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CXorf67_LS0001	chrX:51407611|51407744:+	CXorf67	EZH inhibitory protein	protein coding gene	no	.	9.460	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR29B2CHG_LS0016	chr1:207817414|207823617:-	MIR29B2CHG	MIR29B2 and MIR29C host gene	lncRNA gene	no	.	1.098	0.580	0.000	0.009(82)	0.021(15)	0(0)	non tumor-specific	nAS	no
ETV1_LS007	chr7:13909700|13911239:-	ETV1	ETS variant transcription factor 1	protein coding gene	yes	ENST00000430479.5;ENST00000420159.6;ENST00000399357.7;ENST00000242066.9;ENST00000405358.8;ENST00000403527.5;ENST00000405218.6;ENST00000443137.5;ENST00000403685.5;ENST00000472931.6;ENST00000438956.5	14.377	6.368	5.729	0.663(6350)	0.801(562)	0.862(14981)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ETV7_LS0020	chr6:36385669|36386401:-	ETV7	ETS variant transcription factor 7	protein coding gene	no	.	0.871	0.184	0.000	0.02(193)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_ST3GAL4_LS0030	chr11:126408194|126409268:+	ST3GAL4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein coding gene	no	.	3.489	0.069	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
TUFT1_LS005	chr1:151540426|151562593:+	TUFT1	tuftelin 1	protein coding gene	no	.;.	11.272	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RAMP1_LS001	chr2:237859127|237877224:+	RAMP1	receptor activity modifying protein 1	protein coding gene	no	ENST00000404910.6	2.419	0.826	2.509	0.615(5897)	0.533(374)	0.587(10206)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HMGB2_LS0001	chr4:173332181|173332935:+	HMGB2	high mobility group box 2	protein coding gene	no	.	5.219	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TPRG1_LS0002	chr3:188948535|189000774:+	TPRG1	tumor protein p63 regulated 1	protein coding gene	no	.	2.471	0.552	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPL23AP7_LS0008	chr2:113622019|113622113:-	RPL23AP7	ribosomal protein L23a pseudogene 7	pseudogene	no	.	2.569	0.711	0.000	0.012(117)	0.013(9)	0(0)	non tumor-specific	nAS	no
ZDHHC13_LS004	chr11:19117276|19146181:+	ZDHHC13	zinc finger DHHC-type palmitoyltransferase 13	protein coding gene	no	ENST00000399351.7;ENST00000525490.5	0.362	0.311	1.051	0.642(6155)	0.674(473)	0.484(8420)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SEPHS2_UP_LS0001	chr16:30446194|30446523:-	SEPHS2	selenophosphate synthetase 2	protein coding gene	no	.	1.343	32.621	0.000	0.012(118)	0.056(39)	0(0)	non tumor-specific	nAS	no
MROH1_LS005	chr8:144161089|144163771:+	MROH1	maestro heat like repeat family member 1	protein coding gene	no	ENST00000525287.5;ENST00000528919.5	7.421	4.532	7.155	0.946(9064)	0.933(655)	0.967(16804)	non tumor-specific	exon_skip	yes
SNAI3_LS001	chr16:88678629|88681094:-	SNAI3	snail family transcriptional repressor 3	protein coding gene	no	ENST00000332281.5	3.645	2.180	1.770	0.632(6059)	0.697(489)	0.69(12002)	non tumor-specific	nAS	yes
UN_AL513348.1_UP_LS0007	chr1:194227247|194238501:+	AL513348.1	-	lncRNA gene	no	.	3.135	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ST3GAL3_LS070	chr1:43921638|43930132:+	ST3GAL3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein coding gene	no	ENST00000643252.1;ENST00000642331.1;ENST00000645640.1;ENST00000645705.1;ENST00000645142.1;ENST00000647148.1;ENST00000646686.1;ENST00000645670.1	2.337	0.461	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	exon_skip	yes
UN_LINC01473_UP_LS0005	chr2:186086370|186178599:-	LINC01473	long intergenic non-protein coding RNA 1473	lncRNA gene	no	.	1.646	0.082	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
PHYHD1_LS001	chr9:128921284|128921482:+	PHYHD1	phytanoyl-CoA dioxygenase domain containing 1	protein coding gene	no	ENST00000428610.5;ENST00000412476.5	0.890	0.605	2.483	0.161(1546)	0.379(266)	0.643(11178)	non tumor-specific	intron_retention	yes
UN_AC012313.8_UP_LS0005	chr19:58419327|58421199:+	AC012313.8	-	lncRNA gene	no	.	1.360	0.345	0.000	0.018(174)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_GPR143_LS0009	chrX:9746153|9786242:-	GPR143	G protein-coupled receptor 143	protein coding gene	no	.	1.817	0.528	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ZZEF1_LS0013	chr17:4008954|4009612:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	.	4.436	0.957	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
DOCK3_LS033	chr3:51330223|51333001:+	DOCK3	dedicator of cytokinesis 3	protein coding gene	no	ENST00000266037.9	2.528	2.795	2.811	0.061(589)	0.014(10)	0.233(4051)	non tumor-specific	nAS	yes
HOXB-AS1_LS009	chr17:48550402|48551024:+	HOXB-AS1	HOXB cluster antisense RNA 1	lncRNA gene	no	ENST00000435312.5	1.368	0.924	2.540	0.211(2023)	0.198(139)	0.699(12150)	non tumor-specific	nAS	yes
BVES_LS004	chr6:105124655|105125391:-	BVES	blood vessel epicardial substance	protein coding gene	no	ENST00000314641.9;ENST00000336775.9;ENST00000446408.2	5.498	3.664	3.486	0.439(4208)	0.692(486)	0.753(13089)	non tumor-specific	alt_3prime;exon_skip	yes
ENDOU_LS004	chr12:47713388|47716300:-	ENDOU	endonuclease, poly(U) specific	protein coding gene	no	ENST00000229003.7;ENST00000422538.7;ENST00000545824.2	2.980	16.447	2.892	0.138(1318)	0.14(98)	0.765(13304)	non tumor-specific	nAS	yes
NME9_LS012	chr3:138318219|138319478:-	NME9	NME/NM23 family member 9	protein coding gene	no	ENST00000317876.8;ENST00000383180.6;ENST00000492993.5;ENST00000333911.7;ENST00000474690.5;ENST00000478220.5;ENST00000475751.5	1.393	0.774	1.726	0.177(1698)	0.262(184)	0.356(6194)	non tumor-specific	exon_skip	yes
FUOM_LS004	chr10:133355811|133356640:-	FUOM	fucose mutarotase	protein coding gene	no	ENST00000278025.8;ENST00000368552.7;ENST00000447176.5;ENST00000465384.5;ENST00000368551.1;ENST00000478895.1	40.637	42.028	19.887	0.992(9506)	0.994(698)	0.977(16985)	non tumor-specific	alt_3prime;exon_skip	yes
GSTA2_LS003	chr6:52752995|52754943:-	GSTA2	glutathione S-transferase alpha 2	protein coding gene	no	ENST00000493422.2	24.848	114.541	1.880	0.345(3309)	0.627(440)	0.201(3493)	non tumor-specific	nAS	yes
UN_AC073869.1_LS0044	chr2:131511801|131513864:+	AC073869.1	-	pseudogene	no	.	0.987	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PRKAG2_LS026	chr7:151675637|151735900:-	PRKAG2	protein kinase AMP-activated non-catalytic subunit gamma 2	protein coding gene	no	ENST00000492843.5	0.528	0.260	1.199	0.212(2035)	0.36(253)	0.363(6303)	non tumor-specific	exon_skip	yes
FER1L4_LS009	chr20:35562969|35563854:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	ENST00000616711.4;ENST00000615531.4	0.763	0.106	0.798	0.047(454)	0.014(10)	0.109(1891)	non tumor-specific	nAS	yes
GRIK4_LS007	chr11:120576563|120802693:+	GRIK4	glutamate ionotropic receptor kainate type subunit 4	protein coding gene	no	ENST00000526536.1	0.379	0.024	0.735	0.019(181)	0.001(1)	0.011(195)	non tumor-specific	exon_skip	yes
UN_ZFP36L2_LS0093	chr2:43224535|43224635:+	ZFP36L2	ZFP36 ring finger protein like 2	protein coding gene	yes	.	4.710	0.008	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLEKHF2_LS002	chr8:95134331|95154031:+	PLEKHF2	pleckstrin homology and FYVE domain containing 2	protein coding gene	no	ENST00000519516.1	0.007	0.573	0.656	0.472(4527)	0.595(418)	0.034(583)	non tumor-specific	nAS	yes
CARD14_LS008	chr17:80170056|80178526:+	CARD14	caspase recruitment domain family member 14	protein coding gene	no	ENST00000575465.6;ENST00000575465.6;ENST00000575465.6	0.063	0.017	0.814	0.099(948)	0.095(67)	0.064(1112)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_IPO8_LS0009	chr12:30630957|30631822:-	IPO8	importin 8	protein coding gene	no	.	3.346	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
HERC2P8_LS005	chr16:33099816|33100527:-	HERC2P8	hect domain and RLD 2 pseudogene 8	pseudogene	no	ENST00000564334.6	0.000	0.493	0.664	0(0)	0.001(1)	0.047(818)	non tumor-specific	nAS	yes
UN_BICC1_LS0014	chr10:58614374|58616896:+	BICC1	BicC family RNA binding protein 1	protein coding gene	no	.	4.058	0.590	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC013717.1_LS0012	chr2:44201328|44209210:+	AC013717.1	-	protein coding gene	no	.	0.943	0.240	0.000	0.029(280)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC105999.1_UP_LS0009	chr8:40173201|40177153:+	AC105999.1	-	lncRNA gene	no	.	2.763	0.789	0.000	0.003(29)	0.011(8)	0(0)	non tumor-specific	nAS	no
PPP1R3B_LS002	chr8:9141668|9151347:-	PPP1R3B	protein phosphatase 1 regulatory subunit 3B	protein coding gene	no	ENST00000519699.1	1.256	1.467	0.975	0.479(4588)	0.661(464)	0.302(5244)	non tumor-specific	nAS	yes
TLE6_LS022	chr19:2989785|2991843:+	TLE6	TLE family member 6, subcortical maternal complex member	protein coding gene	no	ENST00000246112.8;ENST00000452088.5;ENST00000497878.5;ENST00000469572.1	1.026	0.459	2.794	0.7(6709)	0.762(535)	0.826(14349)	non tumor-specific	nAS	yes
FRYL_LS034	chr4:48547769|48548690:-	FRYL	FRY like transcription coactivator	protein coding gene	no	ENST00000503238.5;ENST00000358350.8;ENST00000507873.7;ENST00000641795.1;ENST00000514617.5;ENST00000502925.1	5.363	4.321	5.523	0.831(7962)	0.91(639)	0.932(16193)	non tumor-specific	alt_3prime	yes
UN_CR769775.3_UP_LS0011	chr9:62350247|62376498:-	CR769775.3	-	pseudogene	no	.	2.190	0.346	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PIAS4_LS0062	chr19:4036257|4036410:-	PIAS4	protein inhibitor of activated STAT 4	protein coding gene	no	.	105.578	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP001931.1_LS0004	chr11:57742771|57742863:+	AP001931.1	-	protein coding gene	no	.	14.901	0.611	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RASGRP2_LS010	chr11:64737034|64739360:-	RASGRP2	RAS guanyl releasing protein 2	protein coding gene	no	ENST00000464324.5;ENST00000377494.5;ENST00000421556.5;ENST00000394432.7;ENST00000377497.7;ENST00000354024.7	13.149	8.283	28.940	0.662(6345)	0.886(622)	0.97(16862)	non tumor-specific	alt_3prime	yes
RIPOR1_LS012	chr16:67538550|67538990:+	RIPOR1	RHO family interacting cell polarization regulator 1	protein coding gene	no	ENST00000569253.5	0.155	0.234	0.670	0.254(2438)	0.358(251)	0.091(1589)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RF00066_UP_LS0003	chr15:89999360|90067110:+	RF00066	-	small non-coding RNA gene	no	.	1.883	0.998	0.000	0.022(209)	0.064(45)	0(0)	non tumor-specific	nAS	no
UN_MT-CO2_LS0048	chrM:8067|8126:-	MT-CO2	mitochondrially encoded cytochrome c oxidase II	protein coding gene	no	.	102.108	30.386	0.000	0.03(286)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_UVRAG_LS0047	chr11:76008867|76016821:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	.	22.696	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ARAP2_LS011	chr4:36046849|36052006:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	ENST00000503225.5	3.205	0.000	0.775	0.001(7)	0(0)	0.07(1212)	non tumor-specific	exon_skip	yes
ACER2_LS005	chr9:19424841|19434947:+	ACER2	alkaline ceramidase 2	protein coding gene	no	ENST00000340967.2	4.142	5.672	2.651	0.638(6110)	0.822(577)	0.839(14590)	non tumor-specific	exon_skip	yes
UN_RF00012_UP_LS0078	chr15:69460710|69462012:-	RF00012	-	small non-coding RNA gene	no	.	2.948	0.402	0.000	0.032(303)	0.023(16)	0(0)	non tumor-specific	nAS	no
SPEM3_LS002	chr17:7429247|7429368:+	SPEM3	SPEM family member 3	protein coding gene	no	ENST00000636696.2	6.651	0.000	0.706	0(2)	0(0)	0.011(183)	non tumor-specific	nAS	yes
PLOD3_LS028	chr7:101215152|101215908:-	PLOD3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein coding gene	no	ENST00000223127.7;ENST00000421736.1;ENST00000478082.5;ENST00000424135.5	111.010	38.543	36.293	0.991(9495)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
SLC39A14_LS006	chr8:22367737|22404696:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	ENST00000289952.9;ENST00000289952.9	0.469	1.932	1.259	0.148(1422)	0.208(146)	0.443(7696)	non tumor-specific	alt_5prime;exon_skip	yes
PMS2CL_LS001	chr7:6710238|6710750:+	PMS2CL	PMS2 C-terminal like pseudogene	pseudogene	no	ENST00000486256.5	0.451	0.020	0.637	0.001(6)	0.001(1)	0.009(162)	non tumor-specific	nAS	yes
CTSH_LS002	chr15:78923118|78925334:-	CTSH	cathepsin H	protein coding gene	no	ENST00000220166.9;ENST00000527715.5;ENST00000649928.1;ENST00000525807.5;ENST00000533777.5;ENST00000534237.5;ENST00000615999.4;ENST00000534533.5	604.310	635.269	166.139	0.997(9554)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_ATP9A_UP_LS0008	chr20:51795976|51825364:-	ATP9A	ATPase phospholipid transporting 9A (putative)	protein coding gene	no	.	2.929	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC231533.1_LS001	chrX:48699162|48700106:-	AC231533.1	-	lncRNA gene	no	ENST00000416061.1	0.174	0.033	0.710	0.053(509)	0.027(19)	0.088(1522)	non tumor-specific	nAS	yes
RPS3_LS023	chr11:75401733|75402380:+	RPS3	ribosomal protein S3	protein coding gene	no	.;.	1176.994	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
IFFO1_LS007	chr12:6548825|6549476:-	IFFO1	intermediate filament family orphan 1	protein coding gene	no	ENST00000436152.6;ENST00000465801.5;ENST00000336604.8;ENST00000356896.8;ENST00000615885.4	8.135	4.448	9.026	0.856(8197)	0.954(670)	0.97(16860)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MTM1_LS008	chrX:150614699|150619038:+	MTM1	myotubularin 1	protein coding gene	no	ENST00000370396.6;ENST00000490530.1	10.553	10.043	7.830	0.892(8549)	0.981(689)	0.965(16782)	non tumor-specific	exon_skip	yes
ANKRD13C_LS005	chr1:70270956|70274720:-	ANKRD13C	ankyrin repeat domain 13C	protein coding gene	no	ENST00000370944.8;ENST00000262346.6;ENST00000464236.1	15.823	11.722	15.486	0.975(9337)	0.991(696)	0.972(16902)	non tumor-specific	alt_5prime;exon_skip	yes
UN_QSOX1_LS0195	chr1:180197291|180197367:-	QSOX1	quiescin sulfhydryl oxidase 1	protein coding gene	no	.	4.418	0.134	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
ST7_LS047	chr7:117222062|117222861:+	ST7	suppression of tumorigenicity 7	protein coding gene	yes	ENST00000265437.9;ENST00000464020.1	11.814	7.822	7.422	0.941(9018)	0.957(672)	0.909(15797)	non tumor-specific	alt_3prime	yes
TTC17_LS005	chr11:43370385|43379233:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	ENST00000534347.5	0.392	0.240	0.685	0.163(1562)	0.172(121)	0.079(1370)	non tumor-specific	exon_skip;mutex_exons	yes
AC090282.1_LS002	chr17:3160288|3163693:-	AC090282.1	-	lncRNA gene	no	ENST00000572821.5	0.731	0.117	0.668	0.011(107)	0.001(1)	0.006(99)	non tumor-specific	nAS	yes
UN_CELSR2_LS0002	chr1:109251183|109251664:+	CELSR2	cadherin EGF LAG seven-pass G-type receptor 2	protein coding gene	no	.	1.499	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_SMG1P5_LS0002	chr16:30279794|30280443:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	.	2.494	0.439	0.000	0.046(444)	0.019(13)	0(0)	non tumor-specific	nAS	no
PDZD7_LS009	chr10:101015811|101016377:-	PDZD7	PDZ domain containing 7	protein coding gene	no	ENST00000433616.6;ENST00000619208.5	0.604	0.563	1.389	0.096(922)	0.067(47)	0.362(6291)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL583722.2_LS001	chr14:104769386|104769647:+	AL583722.2	-	lncRNA gene	no	ENST00000557223.1	1.972	1.423	8.249	0.907(8687)	0.937(658)	0.976(16959)	non tumor-specific	nAS	yes
L3MBTL1_LS030	chr20:43530889|43532773:+	L3MBTL1	L3MBTL histone methyl-lysine binding protein 1	protein coding gene	no	ENST00000439769.2;ENST00000418998.6;ENST00000649084.1;ENST00000427442.8;ENST00000649917.1;ENST00000647860.1;ENST00000422861.2;ENST00000373135.8;ENST00000373134.5;ENST00000648774.1	0.682	0.748	3.014	0.576(5523)	0.608(427)	0.882(15336)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GPR107_LS0026	chr9:130129987|130135025:+	GPR107	G protein-coupled receptor 107	protein coding gene	no	.	4.324	0.201	0.000	0.009(83)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_SLC50A1_LS0031	chr1:155138535|155138802:-	SLC50A1	solute carrier family 50 member 1	protein coding gene	no	.	2.985	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACOXL_LS0029	chr2:111092966|111104053:+	ACOXL	acyl-CoA oxidase like	protein coding gene	no	.	1.677	0.595	0.000	0.01(98)	0.037(26)	0(0)	non tumor-specific	nAS	no
FGF12_LS002	chr3:192170656|192268651:-	FGF12	fibroblast growth factor 12	protein coding gene	no	ENST00000440901.4	0.014	0.006	0.752	0.035(334)	0.043(30)	0.013(230)	non tumor-specific	nAS	yes
UN_AC091551.1_LS0038	chr18:51019961|51029918:-	AC091551.1	-	protein coding gene	no	.	1.960	0.377	0.000	0.011(108)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC010735.2_UP_LS0009	chr2:226117325|226123221:+	AC010735.2	-	lncRNA gene	no	.	5.098	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LMO7_LS047	chr13:75838196|75838347:+	LMO7	LIM domain 7	protein coding gene	no	ENST00000525107.6	0.082	0.037	1.303	0.124(1192)	0.255(179)	0.467(8118)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
R3HDM2_LS032	chr12:57297387|57298090:-	R3HDM2	R3H domain containing 2	protein coding gene	no	ENST00000347140.7;ENST00000358907.6;ENST00000441731.6;ENST00000402412.5;ENST00000634871.1;ENST00000403821.6;ENST00000547262.1;ENST00000347140.7;ENST00000358907.6;ENST00000441731.6;ENST00000402412.5;ENST00000634871.1;ENST00000403821.6;ENST00000547262.1	27.029	20.128	27.067	0.958(9178)	0.987(693)	0.978(17007)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MDC1_LS0009	chr6:30702877|30703418:-	MDC1	mediator of DNA damage checkpoint 1	protein coding gene	yes	.	1.226	0.028	0.000	0.009(91)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UBR4_LS051	chr1:19121434|19121934:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7;ENST00000425413.5;ENST00000417040.1	23.163	16.981	34.700	0.897(8592)	0.969(680)	0.978(16993)	non tumor-specific	nAS	yes
TMEM123_LS001	chr11:102398891|102401539:-	TMEM123	transmembrane protein 123	protein coding gene	no	ENST00000361236.7;ENST00000398136.6;ENST00000532161.5;ENST00000528969.5	249.425	178.617	75.302	0.979(9382)	0.987(693)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_ZBTB48_LS0007	chr1:6580136|6585919:+	ZBTB48	zinc finger and BTB domain containing 48	protein coding gene	yes	.	1.619	0.381	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ARNT_LS0004	chr1:150812107|150813172:-	ARNT	aryl hydrocarbon receptor nuclear translocator	protein coding gene	no	.	4.839	0.307	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
RRBP1_LS050	chr20:17658920|17659665:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.;.	17.361	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PEPD_LS009	chr19:33396155|33401721:-	PEPD	peptidase D	protein coding gene	no	ENST00000588328.5	0.025	0.056	0.795	0.835(8000)	0.87(611)	0.314(5461)	non tumor-specific	exon_skip	yes
UN_C12orf76_LS0002	chr12:110027766|110028416:+	C12orf76	chromosome 12 open reading frame 76	protein coding gene	no	.	5.166	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC008750.1_UP_LS0001	chr19:51403625|51411410:+	AC008750.1	-	lncRNA gene	no	.	0.815	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RABEP1_LS0029	chr17:5358705|5361208:+	RABEP1	rabaptin, RAB GTPase binding effector protein 1	protein coding gene	no	.	1.165	0.289	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SP2_LS005	chr17:47897927|47915312:+	SP2	Sp2 transcription factor	protein coding gene	no	ENST00000637314.1	3.945	2.313	1.726	0.494(4737)	0.487(342)	0.821(14265)	non tumor-specific	nAS	yes
UN_GDF15_LS0033	chr19:18388314|18388477:-	GDF15	growth differentiation factor 15	protein coding gene	no	.	1.026	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
ARVCF_LS035	chr22:19982091|19987073:-	ARVCF	ARVCF delta catenin family member	protein coding gene	no	ENST00000401994.5;ENST00000406522.5;ENST00000487793.5	2.100	1.760	4.702	0.843(8076)	0.926(650)	0.894(15531)	non tumor-specific	exon_skip	yes
UN_SPSB3_LS0044	chr16:1778607|1781358:-	SPSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein coding gene	no	.	7.071	0.665	0.000	0.028(272)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
STRA6_LS019	chr15:74190901|74191167:-	STRA6	signaling receptor and transporter of retinol STRA6	protein coding gene	yes	ENST00000395105.8;ENST00000423167.6;ENST00000323940.9;ENST00000449139.6;ENST00000416286.7;ENST00000545137.5;ENST00000574439.5;ENST00000616000.4;ENST00000535552.5;ENST00000563965.5;ENST00000574278.5	12.788	7.185	1.161	0.651(6233)	0.379(266)	0.306(5316)	non tumor-specific	alt_3prime;intron_retention	yes
UN_ARMH4_LS0054	chr14:58267492|58267957:-	ARMH4	armadillo like helical domain containing 4	protein coding gene	no	.	1.228	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ALDH1L1_LS042	chr3:126161002|126180312:-	ALDH1L1	aldehyde dehydrogenase 1 family member L1	protein coding gene	no	ENST00000460368.5	0.026	0.046	1.031	0.228(2183)	0.45(316)	0.288(4999)	non tumor-specific	alt_5prime	yes
ADAM8_LS001	chr10:133263233|133263688:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7;ENST00000559018.1	27.858	6.910	6.731	0.968(9275)	0.96(674)	0.957(16635)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AMFR_LS0050	chr16:56409516|56414252:-	AMFR	autocrine motility factor receptor	protein coding gene	no	.	10.036	6.522	0.000	0.067(645)	0.111(78)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GLCCI1_LS006	chr7:8022569|8055433:+	GLCCI1	glucocorticoid induced 1	protein coding gene	no	ENST00000223145.9;ENST00000430798.1	3.649	3.516	1.905	0.753(7213)	0.89(625)	0.765(13289)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KCNJ10_LS0008	chr1:160021448|160022783:+	KCNJ10	potassium inwardly rectifying channel subfamily J member 10	protein coding gene	no	.	2.128	0.060	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_USP32P3_LS0014	chr17:20420609|20424592:+	USP32P3	ubiquitin specific peptidase 32 pseudogene 3	pseudogene	no	.	1.911	0.082	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PRKAR1B_LS0019	chr7:551470|552689:-	PRKAR1B	protein kinase cAMP-dependent type I regulatory subunit beta	protein coding gene	no	.	3.855	0.792	0.000	0.021(198)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_ATP5F1D_LS0015	chr19:1242358|1242486:+	ATP5F1D	ATP synthase F1 subunit delta	protein coding gene	no	.	5.795	0.134	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AL137782.1_LS0005	chr13:75605923|75621763:+	AL137782.1	-	lncRNA gene	no	.	1.617	0.087	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEK5_LS006	chr13:52075826|52076063:-	NEK5	NIMA related kinase 5	protein coding gene	no	ENST00000647945.1;ENST00000355568.8;ENST00000617045.1	1.518	0.871	0.830	0.112(1069)	0.13(91)	0.205(3569)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF700_LS002	chr19:11925273|11947181:+	ZNF700	zinc finger protein 700	protein coding gene	no	ENST00000254321.9	4.073	2.781	2.499	0.886(8493)	0.956(671)	0.871(15142)	non tumor-specific	nAS	yes
MIR9-3HG_LS014	chr15:89387881|89388501:+	MIR9-3HG	MIR9-3 host gene	lncRNA gene	no	ENST00000561327.5;ENST00000538734.6;ENST00000559235.5;ENST00000558754.5;ENST00000546186.2	1.857	0.448	1.902	0.44(4220)	0.452(317)	0.327(5690)	non tumor-specific	nAS	yes
HJURP_LS001	chr2:233833732|233837277:-	HJURP	Holliday junction recognition protein	protein coding gene	no	ENST00000433484.2	0.279	0.000	0.630	0(2)	0(0)	0.006(107)	non tumor-specific	nAS	yes
UN_TMEM260_LS0003	chr14:56578824|56579438:+	TMEM260	transmembrane protein 260	protein coding gene	no	.	1.157	0.154	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CFAP410_LS0023	chr21:44332937|44333237:+	CFAP410	cilia and flagella associated protein 410	protein coding gene	no	.	2.606	0.303	0.000	0.005(51)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC011478.1_UP_LS0021	chr19:31156417|31180961:-	AC011478.1	-	lncRNA gene	no	.	0.981	1.245	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
MAP2K6_LS005	chr17:69502685|69505780:+	MAP2K6	mitogen-activated protein kinase kinase 6	protein coding gene	no	ENST00000589647.5	1.257	1.237	1.374	0.453(4343)	0.662(465)	0.404(7018)	non tumor-specific	exon_skip	yes
FHAD1_LS004	chr1:15272529|15289399:+	FHAD1	forkhead associated phosphopeptide binding domain 1	protein coding gene	no	ENST00000358897.8;ENST00000375998.8	3.609	1.601	0.832	0.112(1073)	0.094(66)	0.162(2818)	non tumor-specific	exon_skip	yes
PLEKHH2_LS033	chr2:43741043|43742741:+	PLEKHH2	pleckstrin homology, MyTH4 and FERM domain containing H2	protein coding gene	no	ENST00000282406.8;ENST00000480103.5;ENST00000493408.2;ENST00000282406.8;ENST00000480103.5;ENST00000493408.2	1.993	2.156	7.670	0.643(6159)	0.83(583)	0.894(15535)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
APCDD1L-DT_LS004	chr20:58519599|58522301:+	APCDD1L-DT	APCDD1L divergent transcript	lncRNA gene	no	ENST00000427794.1	1.306	0.228	0.804	0.072(694)	0.204(143)	0.074(1290)	non tumor-specific	nAS	yes
SYNE2_LS054	chr14:64062895|64065432:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5	4.827	3.669	6.373	0.683(6545)	0.835(586)	0.856(14872)	non tumor-specific	nAS	yes
UN_HEATR6_LS0011	chr17:60073886|60074023:-	HEATR6	HEAT repeat containing 6	protein coding gene	no	.	1.374	0.182	0.000	0.008(79)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_RPL23AP93_UP_LS0006	chr3:194575449|194604287:-	RPL23AP93	ribosomal protein L23a pseudogene 93	pseudogene	no	.	4.435	0.191	0.000	0.01(93)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADGRE2_LS021	chr19:14765397|14765524:-	ADGRE2	adhesion G protein-coupled receptor E2	protein coding gene	no	ENST00000315576.7;ENST00000360222.8;ENST00000596991.6;ENST00000392965.7;ENST00000594294.5;ENST00000594076.5;ENST00000595839.5;ENST00000601345.5;ENST00000595208.5;ENST00000392962.3	9.975	4.469	1.948	0.715(6852)	0.751(527)	0.731(12707)	non tumor-specific	nAS	yes
UN_AC008813.1_UP_LS0028	chr19:52592228|52621099:+	AC008813.1	-	pseudogene	no	.	1.641	0.160	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HLA-E_LS0091	chr6:30491236|30491584:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	4.912	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL162417.1_LS0028	chr9:133098410|133098580:+	AL162417.1	-	protein coding gene	no	.	2.523	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPB41L5_LS0001	chr2:120013210|120042006:+	EPB41L5	erythrocyte membrane protein band 4.1 like 5	protein coding gene	no	.	0.413	0.144	0.000	0.012(116)	0.031(22)	0(0)	non tumor-specific	exon_skip	no
UN_PXDN_LS0081	chr2:1693134|1707771:-	PXDN	peroxidasin	protein coding gene	no	.	0.906	0.089	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SLC13A4_LS0004	chr7:135687322|135688904:+	SLC13A4	solute carrier family 13 member 4	protein coding gene	no	.	1.782	0.144	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CHCHD3_LS012	chr7:132974024|132975169:-	CHCHD3	coiled-coil-helix-coiled-coil-helix domain containing 3	protein coding gene	no	ENST00000481152.2	0.606	0.344	0.998	0.671(6429)	0.664(466)	0.525(9132)	non tumor-specific	nAS	yes
ZCCHC10_LS001	chr5:132998832|133000132:-	ZCCHC10	zinc finger CCHC-type containing 10	protein coding gene	no	ENST00000355372.6	0.128	0.306	0.639	0.66(6322)	0.765(537)	0.027(464)	non tumor-specific	alt_3prime	yes
NSUN6_LS016	chr10:18648645|18655025:-	NSUN6	NOP2/Sun RNA methyltransferase 6	protein coding gene	no	ENST00000606425.2	0.353	0.209	0.812	0.367(3517)	0.387(272)	0.341(5928)	non tumor-specific	nAS	yes
UN_AL390728.4_LS0038	chr1:247209520|247210691:-	AL390728.4	-	pseudogene	no	.	0.748	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HAGH_LS0023	chr16:1819741|1819897:-	HAGH	hydroxyacylglutathione hydrolase	protein coding gene	no	.	4.407	0.912	0.000	0.016(152)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_LINC01320_LS0070	chr2:34061203|34069099:+	LINC01320	long intergenic non-protein coding RNA 1320	lncRNA gene	no	.	0.916	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
GABRA3_LS013	chrX:152364596|152389306:-	GABRA3	gamma-aminobutyric acid type A receptor subunit alpha3	protein coding gene	no	ENST00000535043.1	0.044	0.005	0.735	0.002(17)	0.001(1)	0.003(56)	non tumor-specific	nAS	yes
EFHC1_LS018	chr6:52438454|52452688:+	EFHC1	EF-hand domain containing 1	protein coding gene	no	ENST00000636311.1	1.674	0.000	0.668	0(1)	0(0)	0.083(1450)	non tumor-specific	alt_5prime;exon_skip	yes
FN1_LS028	chr2:215379317|215382212:-	FN1	fibronectin 1	protein coding gene	no	ENST00000421182.5;ENST00000357867.8;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000456923.5;ENST00000421182.5;ENST00000357867.8;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000456923.5;ENST00000421182.5;ENST00000357867.8;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000456923.5	188.520	187.369	68.968	0.964(9232)	0.989(694)	0.971(16875)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC25A17_LS004	chr22:40776308|40777040:-	SLC25A17	solute carrier family 25 member 17	protein coding gene	no	ENST00000420970.5	0.057	0.289	0.780	0.553(5296)	0.55(386)	0.328(5700)	non tumor-specific	exon_skip	yes
COL5A3_LS008	chr19:9960557|9960651:-	COL5A3	collagen type V alpha 3 chain	protein coding gene	no	ENST00000264828.3	25.838	11.072	65.646	0.906(8679)	0.85(597)	0.967(16806)	non tumor-specific	nAS	yes
UN_AGPAT5P1_UP_LS0003	chrY:3058784|3199500:+	AGPAT5P1	1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1	pseudogene	no	.	2.102	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004448.2_UP_LS0011	chr17:19580355|19615452:-	AC004448.2	-	lncRNA gene	no	.	1.233	1.269	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
DAZ2_LS008	chrY:23232112|23234432:+	DAZ2	deleted in azoospermia 2	protein coding gene	no	ENST00000400493.6;ENST00000449947.5;ENST00000382449.5;ENST00000382431.8;ENST00000382306.6;ENST00000382424.8;ENST00000382440.5;ENST00000382433.4	3.327	0.000	0.629	0.005(51)	0(0)	0.001(11)	non tumor-specific	nAS	yes
AURKAIP1_LS004	chr1:1374590|1374705:-	AURKAIP1	aurora kinase A interacting protein 1	protein coding gene	no	ENST00000496905.1	0.091	0.118	1.967	0.766(7335)	0.741(520)	0.849(14753)	non tumor-specific	intron_retention	yes
UN_TNNI1_UP_LS0004	chr1:201457401|201460787:-	TNNI1	troponin I1, slow skeletal type	protein coding gene	no	.	1.256	0.041	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_POLR3A_LS0019	chr10:78010540|78011532:-	POLR3A	RNA polymerase III subunit A	protein coding gene	no	.	1.368	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
ITGA10_LS002	chr1:145893274|145893540:-	ITGA10	integrin subunit alpha 10	protein coding gene	no	ENST00000369304.7;ENST00000539363.2	3.368	1.646	11.213	0.338(3242)	0.477(335)	0.957(16627)	non tumor-specific	nAS	yes
UN_PPOX_LS0046	chr1:161175129|161175808:-	PPOX	protoporphyrinogen oxidase	protein coding gene	no	.	0.215	0.000	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
AC063979.2_LS006	chr5:72761670|72762610:-	AC063979.2	-	lncRNA gene	no	ENST00000508217.2	0.358	0.128	0.877	0.047(448)	0.091(64)	0.107(1860)	non tumor-specific	nAS	yes
DZIP3_LS001	chr3:108589839|108605335:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	ENST00000361582.7;ENST00000495008.5	4.122	3.145	2.984	0.644(6168)	0.818(574)	0.844(14679)	non tumor-specific	exon_skip	yes
NOC3L_LS024	chr10:94361872|94362830:-	NOC3L	NOC3 like DNA replication regulator	protein coding gene	no	ENST00000371361.3;ENST00000463649.5;ENST00000461562.1	10.348	5.623	5.809	0.824(7892)	0.899(631)	0.94(16336)	non tumor-specific	alt_3prime	yes
UN_LINC00636_LS0004	chr3:107859681|107923631:+	LINC00636	long intergenic non-protein coding RNA 636	lncRNA gene	no	.	3.832	0.719	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADCY2_LS007	chr5:7626316|7690691:+	ADCY2	adenylate cyclase 2	protein coding gene	no	ENST00000338316.8;ENST00000515681.1	9.893	6.214	5.157	0.328(3142)	0.402(282)	0.746(12969)	non tumor-specific	exon_skip	yes
UN_RALGAPB_LS0073	chr20:38575034|38575873:+	RALGAPB	Ral GTPase activating protein non-catalytic subunit beta	protein coding gene	no	.	2.957	0.740	0.000	0.033(312)	0.026(18)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
MACF1_LS113	chr1:39452812|39453707:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000567887.5;ENST00000372915.7;ENST00000361689.6;ENST00000564288.5;ENST00000372925.6;ENST00000289893.8;ENST00000487656.1	107.008	89.888	128.891	0.99(9486)	0.994(698)	0.979(17020)	non tumor-specific	nAS	yes
CHCHD4_LS002	chr3:14116519|14124655:-	CHCHD4	coiled-coil-helix-coiled-coil-helix domain containing 4	protein coding gene	no	.;.	1.952	0.249	0.000	0.01(93)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DCAF1_LS012	chr3:51420997|51422307:-	DCAF1	DDB1 and CUL4 associated factor 1	protein coding gene	no	ENST00000423656.5;ENST00000504652.5	20.910	14.993	12.211	0.955(9151)	0.98(688)	0.968(16823)	non tumor-specific	alt_5prime	yes
TBPL1_LS007	chr6:133982650|133982817:+	TBPL1	TATA-box binding protein like 1	protein coding gene	no	ENST00000416965.5;ENST00000613034.4;ENST00000367871.5;ENST00000237264.8;ENST00000367869.1	29.689	17.895	22.874	0.99(9485)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
NDUFAF5_LS001	chr20:13785290|13787312:+	NDUFAF5	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein coding gene	no	ENST00000378106.9;ENST00000378081.9;ENST00000463598.1;ENST00000485738.5;ENST00000477732.5;ENST00000481249.5;ENST00000475968.5	20.249	11.493	13.335	0.964(9235)	0.956(671)	0.973(16913)	non tumor-specific	alt_3prime	yes
UN_PRR16_UP_LS0017	chr5:120138635|120218146:+	PRR16	proline rich 16	protein coding gene	no	.	2.467	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GOLGA8N_LS019	chr15:32602611|32603186:+	GOLGA8N	golgin A8 family member N	protein coding gene	no	ENST00000448387.6;ENST00000569659.5;ENST00000605665.1	2.655	1.719	0.663	0.749(7172)	0.822(577)	0.076(1329)	non tumor-specific	alt_3prime	yes
UN_AP000769.1_LS0005	chr11:65455581|65456638:+	AP000769.1	-	pseudogene	no	.	3.868	0.042	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
MFRP_LS008	chr11:119343003|119344632:-	MFRP	membrane frizzled-related protein	protein coding gene	no	ENST00000360167.4	0.348	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
LGI4_LS009	chr19:35131860|35131971:-	LGI4	leucine rich repeat LGI family member 4	protein coding gene	no	ENST00000310123.7;ENST00000392225.7;ENST00000493050.5;ENST00000587780.5;ENST00000591840.5;ENST00000593248.5;ENST00000591633.2;ENST00000473160.6;ENST00000592346.1	3.915	7.450	89.541	0.748(7163)	0.972(682)	0.957(16639)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FTL_LS0205	chr19:48966594|48966657:-	FTL	ferritin light chain	protein coding gene	no	.	108.021	93.490	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLF2_LS001	chr19:16324998|16325216:+	KLF2	Kruppel like factor 2	protein coding gene	yes	ENST00000248071.5	19.680	30.479	98.566	0.927(8878)	0.967(679)	0.978(17004)	non tumor-specific	exon_skip;intron_retention	yes
UN_LINC00910_LS0014	chr17:43381660|43387801:-	LINC00910	long intergenic non-protein coding RNA 910	lncRNA gene	no	.	0.587	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LRRC59_LS0064	chr17:50392858|50397255:+	LRRC59	leucine rich repeat containing 59	protein coding gene	no	.	2.161	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SLC26A6_LS015	chr3:48628541|48629642:-	SLC26A6	solute carrier family 26 member 6	protein coding gene	no	ENST00000489483.5;ENST00000489483.5	0.040	0.042	0.887	0.049(465)	0.027(19)	0.356(6193)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PPP1R12A_LS006	chr12:79778600|79781815:-	PPP1R12A	protein phosphatase 1 regulatory subunit 12A	protein coding gene	no	ENST00000261207.9;ENST00000450142.6;ENST00000437004.6;ENST00000546762.5;ENST00000550903.5;ENST00000547253.5;ENST00000550351.5;ENST00000546369.5;ENST00000550107.5;ENST00000261207.9;ENST00000450142.6;ENST00000437004.6;ENST00000546762.5;ENST00000550903.5;ENST00000547253.5;ENST00000550351.5;ENST00000546369.5;ENST00000550107.5	35.538	19.544	39.904	0.979(9383)	0.986(692)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF44_LS0027	chr19:12271977|12274973:-	ZNF44	zinc finger protein 44	protein coding gene	no	.	1.338	0.437	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
KATNAL1_LS009	chr13:30241086|30255447:-	KATNAL1	katanin catalytic subunit A1 like 1	protein coding gene	no	ENST00000380615.7;ENST00000380617.7	7.418	5.218	7.014	0.795(7618)	0.907(637)	0.953(16557)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC245164.1_UP_LS0009	chr8:2006769|2007142:+	AC245164.1	-	lncRNA gene	no	.	2.415	0.978	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
HSPA12A_LS018	chr10:116835022|116849566:-	HSPA12A	heat shock protein family A (Hsp70) member 12A	protein coding gene	no	ENST00000635765.1	2.498	1.745	1.734	0.196(1880)	0.335(235)	0.619(10768)	non tumor-specific	nAS	yes
INTS12_LS026	chr4:105708162|105708638:-	INTS12	integrator complex subunit 12	protein coding gene	no	ENST00000433009.1	0.037	0.019	0.668	0.343(3291)	0.342(240)	0.157(2733)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_PIK3C2B_LS0033	chr1:204447578|204448751:-	PIK3C2B	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein coding gene	no	.	1.440	0.209	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
DTX2_LS003	chr7:76461836|76463654:+	DTX2	deltex E3 ubiquitin ligase 2	protein coding gene	no	ENST00000425780.5	0.027	0.056	0.834	0.534(5119)	0.499(350)	0.389(6757)	non tumor-specific	alt_3prime;exon_skip	yes
TBX4_LS010	chr17:61478779|61479881:+	TBX4	T-box transcription factor 4	protein coding gene	no	ENST00000393853.8;ENST00000644296.1;ENST00000240335.1;ENST00000642491.1;ENST00000590174.5;ENST00000589449.5;ENST00000586874.2	2.738	4.732	1.224	0.206(1972)	0.245(172)	0.262(4552)	non tumor-specific	nAS	yes
UN_SCP2_LS0024	chr1:53040256|53047858:+	SCP2	synaptonemal complex protein 2	protein coding gene	no	.	2.449	1.276	0.000	0.012(118)	0.011(8)	0(0)	non tumor-specific	nAS	no
TEKT4_LS003	chr2:94873590|94873965:+	TEKT4	tektin 4	protein coding gene	no	ENST00000468063.1;ENST00000295201.4	8.204	2.998	1.232	0.059(562)	0.113(79)	0.068(1190)	non tumor-specific	exon_skip;intron_retention	yes
UN_RNU6-1187P_UP_LS0001	chr4:77154976|77155270:-	RNU6-1187P	RNA, U6 small nuclear 1187, pseudogene	small non-coding RNA gene	no	.	2.489	0.623	0.000	0.052(495)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_RPL23AP7_LS0012	chr2:113622161|113625609:-	RPL23AP7	ribosomal protein L23a pseudogene 7	pseudogene	no	.	4.751	0.816	0.000	0.048(459)	0.027(19)	0(0)	non tumor-specific	nAS	no
LOXL3_LS030	chr2:74552646|74555661:-	LOXL3	lysyl oxidase like 3	protein coding gene	no	.;.	0.434	0.276	0.000	0.011(103)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KLK11_LS0038	chr19:51026387|51026540:+	KLK11	kallikrein related peptidase 11	protein coding gene	no	.	1.138	0.086	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	nAS	no
ZNF786_LS003	chr7:149074538|149090623:-	ZNF786	zinc finger protein 786	protein coding gene	no	ENST00000316286.13	0.745	0.520	1.547	0.798(7644)	0.826(580)	0.751(13059)	non tumor-specific	exon_skip	yes
NPIPB11_LS008	chr16:29394076|29397568:-	NPIPB11	nuclear pore complex interacting protein family member B11	protein coding gene	no	ENST00000614927.1	0.122	0.115	0.780	0.122(1172)	0.101(71)	0.162(2815)	non tumor-specific	nAS	yes
CYB561A3_LS030	chr11:61356728|61361733:-	CYB561A3	cytochrome b561 family member A3	protein coding gene	no	ENST00000536687.1	0.012	0.014	1.397	0.797(7635)	0.852(598)	0.648(11270)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KIAA0355_LS0012	chr19:34299152|34299679:+	KIAA0355	granule associated Rac and RHOG effector 1	protein coding gene	no	.	1.097	0.177	0.000	0.024(227)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_MARCH10_LS0017	chr17:62706469|62750646:+	MARCH10	membrane associated ring-CH-type finger 10	protein coding gene	no	.	4.394	0.252	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
FKBP9_LS010	chr7:32988652|32992722:+	FKBP9	FKBP prolyl isomerase 9	protein coding gene	no	ENST00000489038.5	0.368	0.326	0.836	0.734(7029)	0.842(591)	0.367(6380)	non tumor-specific	nAS	yes
KCNH6_LS001	chr17:63523489|63524139:+	KCNH6	potassium voltage-gated channel subfamily H member 6	protein coding gene	no	ENST00000456941.6;ENST00000581784.5;ENST00000580652.5;ENST00000583465.1;ENST00000314672.9;ENST00000583023.1	6.935	1.579	1.210	0.107(1021)	0.187(131)	0.092(1602)	non tumor-specific	alt_3prime	yes
ABHD12B_LS005	chr14:50878847|50880452:+	ABHD12B	abhydrolase domain containing 12B	protein coding gene	no	ENST00000382029.7;ENST00000337334.6;ENST00000557345.5	7.002	1.064	3.213	0.094(905)	0.097(68)	0.286(4969)	non tumor-specific	exon_skip	yes
UN_FAM83H_LS0097	chr8:143725220|143725359:+	FAM83H	family with sequence similarity 83 member H	protein coding gene	no	.	2.084	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
DENND3_LS032	chr8:141175459|141176591:+	DENND3	DENN domain containing 3	protein coding gene	no	ENST00000262585.6;ENST00000519811.5;ENST00000518668.5;ENST00000424248.2;ENST00000523066.1	13.268	12.104	20.412	0.856(8199)	0.926(650)	0.975(16949)	non tumor-specific	alt_5prime;intron_retention	yes
UN_PTER_LS0045	chr10:16468690|16484337:+	PTER	phosphotriesterase related	protein coding gene	no	.	1.538	0.080	0.000	0.014(132)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ISY1-RAB43_LS0044	chr3:129090569|129090627:+	ISY1-RAB43	ISY1-RAB43 readthrough	protein coding gene	no	.	2.282	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SEMA4F_LS003	chr2:74654521|74657565:+	SEMA4F	ssemaphorin 4F	protein coding gene	no	ENST00000458114.5	0.043	0.026	0.691	0.187(1792)	0.205(144)	0.204(3549)	non tumor-specific	exon_skip	yes
AP002991.1_LS001	chr11:115659724|115676686:+	AP002991.1	-	lncRNA gene	no	ENST00000539305.1	0.411	0.010	1.026	0.023(224)	0.001(1)	0.098(1703)	non tumor-specific	nAS	yes
UN_OSBPL6_LS0002	chr2:178216854|178217777:+	OSBPL6	oxysterol binding protein like 6	protein coding gene	no	.	1.657	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RABEP2_LS0022	chr16:28914906|28919786:-	RABEP2	rabaptin, RAB GTPase binding effector protein 2	protein coding gene	no	.	4.688	0.098	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_CPSF7_LS0014	chr11:61404704|61405118:-	CPSF7	cleavage and polyadenylation specific factor 7	protein coding gene	no	.	9.108	1.667	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AC011676.4_LS001	chr8:141326368|141326964:+	AC011676.4	-	lncRNA gene	no	ENST00000523604.1	1.090	0.000	0.730	0.002(19)	0(0)	0.003(50)	non tumor-specific	nAS	yes
LINC01729_LS002	chr20:5508328|5509876:-	LINC01729	long intergenic non-protein coding RNA 1729	lncRNA gene	no	ENST00000450640.1	2.214	0.000	0.644	0.001(6)	0(0)	0.004(71)	non tumor-specific	nAS	yes
FAM153C_LS025	chr5:178052687|178053840:+	FAM153C	family with sequence similarity 153 member C, pseudogene	protein coding gene	no	ENST00000506096.5	0.977	0.651	2.859	0.169(1623)	0.191(134)	0.682(11850)	non tumor-specific	exon_skip	yes
UN_TCTA_LS0015	chr3:49415549|49415603:+	TCTA	T cell leukemia translocation altered	protein coding gene	no	.	9.557	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	intron_retention	no
SYCP2_LS061	chr20:59920487|59921310:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000357552.7;ENST00000371001.6;ENST00000446834.5;ENST00000476314.1;ENST00000425931.1	1.561	0.303	1.432	0.479(4590)	0.483(339)	0.678(11782)	non tumor-specific	exon_skip	yes
C17orf80_LS007	chr17:73233325|73242244:+	C17orf80	chromosome 17 open reading frame 80	protein coding gene	no	ENST00000582793.1	0.479	0.251	0.754	0.442(4232)	0.464(326)	0.222(3867)	non tumor-specific	exon_skip	yes
RHEX_LS005	chr1:206098181|206101136:+	RHEX	regulator of hemoglobinization and erythroid cell expansion	protein coding gene	no	ENST00000603378.5	0.063	0.073	0.628	0.106(1016)	0.097(68)	0.03(521)	non tumor-specific	nAS	yes
TRAM1_LS004	chr8:70586999|70587106:-	TRAM1	translocation associated membrane protein 1	protein coding gene	no	ENST00000521425.5;ENST00000262213.6;ENST00000521049.5	338.248	234.835	109.509	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ZNF429_LS0038	chr19:21526986|21527390:+	ZNF429	zinc finger protein 429	protein coding gene	no	.	0.869	0.110	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
DPAGT1_LS016	chr11:119100408|119101018:-	DPAGT1	dolichyl-phosphate N-acetylglucosaminephosphotransferase 1	protein coding gene	no	ENST00000481084.5;ENST00000481084.5	0.021	0.052	0.619	0.119(1137)	0.08(56)	0.066(1139)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ANO1_LS010	chr11:70108404|70111707:+	ANO1	anoctamin 1	protein coding gene	no	ENST00000355303.9;ENST00000531604.5;ENST00000316296.9;ENST00000530676.5;ENST00000529913.1;ENST00000531349.5	5.151	4.008	8.948	0.806(7727)	0.957(672)	0.811(14090)	non tumor-specific	exon_skip	yes
UN_RNF166_LS0026	chr16:88703072|88706171:-	RNF166	ring finger protein 166	protein coding gene	no	.	1.871	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RAB11FIP3_LS0040	chr16:494832|494956:+	RAB11FIP3	RAB11 family interacting protein 3	protein coding gene	no	.	9.552	2.381	0.000	0.043(416)	0.067(47)	0(0)	non tumor-specific	nAS	no
GCNT2_LS021	chr6:10619631|10621351:+	GCNT2	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein coding gene	no	ENST00000485764.1	0.110	0.126	0.719	0.207(1985)	0.385(270)	0.122(2117)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CDC42_LS0001	chr1:22052868|22074094:+	CDC42	cell division cycle 42	protein coding gene	no	.	3.706	0.112	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SEC14L1_LS391	chr17:77216088|77216258:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	7.872	1.592	0.000	0.006(60)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AL138752.2_LS0051	chr9:37763865|37764609:+	AL138752.2	-	protein coding gene	no	.	0.677	0.019	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC021382.1_LS001	chr18:27343311|27344221:+	AC021382.1	-	lncRNA gene	no	ENST00000584547.1	0.114	0.000	0.722	0.001(7)	0(0)	0.005(90)	non tumor-specific	nAS	yes
EZH2_LS026	chr7:148826632|148827164:-	EZH2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein coding gene	yes	ENST00000492143.5;ENST00000478654.5;ENST00000460911.5;ENST00000350995.6;ENST00000320356.6;ENST00000476773.5;ENST00000483967.5;ENST00000498186.5;ENST00000483012.1	23.320	3.791	3.340	0.94(9004)	0.665(467)	0.874(15196)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF814_LS0017	chr19:57863323|57865493:+	ZNF814	zinc finger protein 814	protein coding gene	no	.	2.821	0.098	0.000	0.01(97)	0.003(2)	0(0)	non tumor-specific	nAS	no
RSRC1_LS007	chr3:158122298|158123866:+	RSRC1	arginine and serine rich coiled-coil 1	protein coding gene	no	ENST00000480820.5;ENST00000494002.5;ENST00000611884.4;ENST00000295930.7;ENST00000471994.5;ENST00000464171.5;ENST00000312179.10;ENST00000475278.6;ENST00000480119.5;ENST00000468344.5;ENST00000471911.5;ENST00000476899.5;ENST00000477788.5	31.377	16.067	17.272	0.98(9387)	0.994(698)	0.978(16992)	non tumor-specific	alt_3prime	yes
UN_FAM111A-DT_LS0007	chr11:59135588|59136035:-	FAM111A-DT	FAM111A divergent transcript	lncRNA gene	no	.	1.712	0.368	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
TEN1_LS009	chr17:75991577|76000141:+	TEN1	teneurin transmembrane protein 1	protein coding gene	no	ENST00000588202.5	1.470	2.715	0.900	0.869(8324)	0.87(611)	0.504(8762)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PKN1_LS0003	chr19:14434122|14441143:+	PKN1	protein kinase N1	protein coding gene	no	.	1.265	0.228	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
SBNO2_LS041	chr19:1127765|1132090:-	SBNO2	strawberry notch homolog 2	protein coding gene	no	ENST00000438103.6;ENST00000592222.5	6.909	3.545	8.471	0.818(7834)	0.856(601)	0.901(15654)	non tumor-specific	nAS	yes
ALDH1L2_LS021	chr12:105066665|105068719:-	ALDH1L2	aldehyde dehydrogenase 1 family member L2	protein coding gene	no	ENST00000552270.1	0.317	0.285	0.674	0.049(470)	0.023(16)	0.104(1808)	non tumor-specific	alt_3prime	yes
UN_ADGRL2_LS0027	chr1:81721200|81761811:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	.	1.955	0.160	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ARPP19_LS019	chr15:52568902|52569116:-	ARPP19	cAMP regulated phosphoprotein 19	protein coding gene	no	ENST00000566423.5;ENST00000569723.5;ENST00000561971.1	6.032	4.533	8.471	0.969(9283)	0.98(688)	0.968(16821)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TBX2_LS007	chr17:61403207|61404421:+	TBX2	T-box transcription factor 2	protein coding gene	yes	ENST00000240328.3;ENST00000419047.5;ENST00000477081.1	57.779	44.948	46.083	0.954(9137)	0.98(688)	0.943(16386)	non tumor-specific	alt_5prime;exon_skip	yes
ZBTB7C_LS019	chr18:48162397|48165131:-	ZBTB7C	zinc finger and BTB domain containing 7C	protein coding gene	yes	ENST00000588982.5;ENST00000592656.5;ENST00000592387.5;ENST00000588053.5;ENST00000591526.5	0.237	0.048	0.698	0.082(788)	0.067(47)	0.065(1123)	non tumor-specific	exon_skip;mutex_exons	yes
GPT2_LS007	chr16:46885331|46885467:+	GPT2	glutamic--pyruvic transaminase 2	protein coding gene	no	ENST00000440783.2	0.119	0.035	1.108	0.09(859)	0.104(73)	0.251(4357)	non tumor-specific	alt_5prime;exon_skip	yes
UGDH-AS1_LS001	chr4:39528338|39531969:+	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	ENST00000504032.1	8.655	7.268	7.184	0.956(9157)	0.993(697)	0.962(16717)	non tumor-specific	nAS	yes
SLC10A1_LS004	chr14:69786307|69796800:-	SLC10A1	solute carrier family 10 member 1	protein coding gene	no	ENST00000216540.4	15.810	37.390	1.118	0.043(411)	0.091(64)	0.037(642)	non tumor-specific	nAS	yes
TEP1_LS031	chr14:20378853|20378981:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000262715.9;ENST00000555008.5;ENST00000555727.5;ENST00000556935.5;ENST00000557314.5	9.044	6.536	9.336	0.877(8406)	0.929(652)	0.964(16748)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SH3BP5_LS021	chr3:15330566|15332271:-	SH3BP5	SH3 domain binding protein 5	protein coding gene	no	ENST00000383791.7;ENST00000450625.1	9.488	16.900	35.790	0.965(9242)	0.994(698)	0.978(17006)	non tumor-specific	alt_5prime;exon_skip	yes
MBNL1_LS030	chr3:152455577|152456267:+	MBNL1	muscleblind like splicing regulator 1	protein coding gene	no	ENST00000282488.11;ENST00000493459.5;ENST00000324210.9;ENST00000545754.5;ENST00000465907.6	9.001	6.013	15.768	0.937(8976)	0.969(680)	0.972(16890)	non tumor-specific	exon_skip	yes
UN_DPY19L3_LS0035	chr19:32468813|32470375:+	DPY19L3	dpy-19 like C-mannosyltransferase 3	protein coding gene	no	.	4.911	0.027	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ENO3_LS0019	chr17:4950630|4951143:+	ENO3	enolase 3	protein coding gene	no	.	0.493	0.016	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC104002.3_UP_LS0008	chr15:27679193|27682159:-	AC104002.3	-	lncRNA gene	no	.	6.268	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLMN_LS0043	chr14:95310194|95319711:-	CLMN	calmin	protein coding gene	no	.	1.522	0.580	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
C12orf42_LS013	chr12:103270308|103277150:-	C12orf42	chromosome 12 open reading frame 42	protein coding gene	no	ENST00000552977.5	0.731	0.000	0.798	0.004(34)	0(0)	0.025(440)	non tumor-specific	exon_skip	yes
UN_AC244197.3_LS0077	chrX:149526794|149526936:-	AC244197.3	-	protein coding gene	no	.	6.043	1.072	0.000	0.022(214)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_FAM120AOS_LS0032	chr9:93450599|93450751:-	FAM120AOS	family with sequence similarity 120A opposite strand	protein coding gene	no	.	3.232	0.888	0.000	0.004(40)	0.01(7)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NIPAL3_LS014	chr1:24453504|24454054:+	NIPAL3	NIPA like domain containing 3	protein coding gene	no	ENST00000358028.8	0.046	0.016	0.715	0.132(1265)	0.144(101)	0.088(1537)	non tumor-specific	alt_3prime	yes
TNNI1_LS003	chr1:201410435|201411357:-	TNNI1	troponin I1, slow skeletal type	protein coding gene	no	ENST00000622580.4;ENST00000361379.8;ENST00000336092.8;ENST00000367312.5	19.221	35.948	3.181	0.113(1078)	0.275(193)	0.743(12910)	non tumor-specific	nAS	yes
SELP_LS012	chr1:169597176|169603026:-	SELP	selectin P	protein coding gene	no	ENST00000426706.6;ENST00000263686.10;ENST00000367786.6;ENST00000367788.6	4.929	8.127	7.637	0.536(5131)	0.932(654)	0.775(13473)	non tumor-specific	exon_skip	yes
UN_KLRG1_LS0011	chr12:8971226|8992206:+	KLRG1	killer cell lectin like receptor G1	protein coding gene	no	.	0.659	0.185	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_SPATA13_LS0009	chr13:23998276|23998947:+	SPATA13	spermatogenesis associated 13	lncRNA gene	no	.	1.593	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP468_UP_LS0001	chr19:17950277|17954561:+	RNA5SP468	RNA, 5S ribosomal pseudogene 468	no	no	.	1.757	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
PKD1P1_LS036	chr16:16324934|16325028:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	ENST00000458669.1	11.328	6.987	11.566	0.838(8026)	0.84(590)	0.897(15586)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CD7_LS005	chr17:82317011|82317414:-	CD7	CD7 molecule	protein coding gene	no	ENST00000578509.1	0.068	0.134	0.853	0.243(2328)	0.207(145)	0.129(2241)	non tumor-specific	alt_3prime;intron_retention	yes
GYS2_LS013	chr12:21574326|21575866:-	GYS2	glycogen synthase 2	protein coding gene	no	ENST00000261195.2	9.085	22.709	1.035	0.039(372)	0.158(111)	0.261(4531)	non tumor-specific	nAS	yes
UN_AC090114.3_LS0002	chr7:128533730|128562315:+	AC090114.3	-	pseudogene	no	.	2.377	0.307	0.000	0.012(117)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_RAB5B_LS0099	chr12:55993860|55994104:-	RAB5B	RAB5B, member RAS oncogene family	protein coding gene	no	.	2.578	0.301	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ATF6B_LS0028	chr6:32117694|32118775:-	ATF6B	activating transcription factor 6 beta	protein coding gene	no	.	17.392	7.568	0.000	0.018(175)	0.019(13)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_TOR1A_UP_LS0002	chr9:129828041|130077135:-	TOR1A	torsin family 1 member A	protein coding gene	no	.	11.191	4.307	0.000	0.018(168)	0.006(4)	0(0)	non tumor-specific	nAS	no
TEP1_LS055	chr14:20389740|20390681:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000262715.9;ENST00000555008.5;ENST00000555727.5;ENST00000556935.5	6.921	4.107	7.575	0.729(6984)	0.832(584)	0.945(16424)	non tumor-specific	exon_skip	yes
EIPR1_LS024	chr2:3338149|3354550:-	EIPR1	EARP complex and GARP complex interacting protein 1	protein coding gene	no	ENST00000398659.8;ENST00000382125.8;ENST00000463662.5;ENST00000435721.5;ENST00000443925.6;ENST00000444776.1	41.631	23.071	14.943	0.994(9521)	0.997(700)	0.979(17009)	non tumor-specific	exon_skip	yes
RAB29_LS006	chr1:205770854|205775273:-	RAB29	RAB29, member RAS oncogene family	protein coding gene	no	ENST00000468887.1;ENST00000468887.1	0.146	0.087	0.631	0.407(3904)	0.538(378)	0.042(722)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TRAC_UP_LS0081	chr14:22543240|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	3.493	1.566	0.000	0.093(892)	0.1(70)	0(0)	non tumor-specific	nAS	no
UN_UBQLN1_LS0025	chr9:83683066|83707500:-	UBQLN1	ubiquilin 1	protein coding gene	no	.	7.147	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PCDH17_LS006	chr13:57666526|57666664:+	PCDH17	protocadherin 17	protein coding gene	yes	ENST00000612954.4	0.631	0.468	0.872	0.369(3533)	0.343(241)	0.192(3335)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MYO6_LS0008	chr6:75813688|75817501:+	MYO6	myosin VI	protein coding gene	no	.	5.825	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TRIP12_LS038	chr2:229818512|229829193:-	TRIP12	thyroid hormone receptor interactor 12	protein coding gene	no	ENST00000283943.9;ENST00000389045.7;ENST00000389044.8;ENST00000479037.5	39.675	32.668	20.834	0.892(8544)	0.97(681)	0.975(16949)	non tumor-specific	exon_skip	yes
SLC24A3_LS012	chr20:19681991|19684176:+	SLC24A3	solute carrier family 24 member 3	protein coding gene	no	ENST00000328041.10;ENST00000613834.1	11.805	13.221	8.885	0.656(6288)	0.873(613)	0.895(15553)	non tumor-specific	nAS	yes
TBRG4_LS030	chr7:45109287|45111643:-	TBRG4	transforming growth factor beta regulator 4	protein coding gene	no	ENST00000258770.7;ENST00000361278.7;ENST00000461363.1;ENST00000471142.5;ENST00000258770.7;ENST00000361278.7;ENST00000461363.1;ENST00000471142.5	30.969	13.498	23.806	0.992(9509)	0.994(698)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KCP_LS0031	chr7:128865533|128865570:-	KCP	kielin cysteine rich BMP regulator	protein coding gene	no	.	12.426	0.711	0.000	0.011(101)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAVS_LS0098	chr20:3869155|3871447:-	MAVS	mitochondrial antiviral signaling protein	protein coding gene	no	.	1.970	0.420	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ASB15_LS004	chr7:123604212|123614501:+	ASB15	ankyrin repeat and SOCS box containing 15	protein coding gene	no	ENST00000437535.5	1.249	6.129	5.117	0.003(29)	0.02(14)	0.095(1652)	non tumor-specific	exon_skip	yes
FLJ46906_LS004	chr6:138696755|138696995:+	FLJ46906	-	lncRNA gene	no	ENST00000428044.5	0.767	0.322	2.596	0.377(3614)	0.291(204)	0.412(7166)	non tumor-specific	nAS	yes
UN_MASP1_UP_LS0032	chr3:187478433|187507766:-	MASP1	mannan binding lectin serine peptidase 1	protein coding gene	no	.	3.793	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC068533.3_LS001	chr7:66119742|66120553:-	AC068533.3	-	lncRNA gene	no	ENST00000435524.2	2.229	0.000	0.679	0.001(6)	0(0)	0.002(40)	non tumor-specific	nAS	yes
CRMP1_LS019	chr4:5866756|5892589:-	CRMP1	collapsin response mediator protein 1	protein coding gene	no	ENST00000324989.11	0.198	0.233	6.650	0.158(1511)	0.108(76)	0.209(3637)	non tumor-specific	nAS	yes
SEC24A_LS006	chr5:134675217|134676023:+	SEC24A	SEC24 homolog A, COPII coat complex component	protein coding gene	no	ENST00000398844.6;ENST00000322887.8	20.572	15.020	11.856	0.92(8814)	0.977(686)	0.961(16707)	non tumor-specific	exon_skip	yes
UN_BAZ2B_LS0024	chr2:159348857|159349007:-	BAZ2B	bromodomain adjacent to zinc finger domain 2B	protein coding gene	no	.	3.736	0.138	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SIDT2_LS0029	chr11:117197146|117197230:-	SIDT2	SID1 transmembrane family member 2	protein coding gene	no	.	4.436	1.340	0.000	0.039(378)	0.016(11)	0(0)	non tumor-specific	nAS	no
CCDC39_LS052	chr3:180748316|180751348:-	CCDC39	coiled-coil domain containing 39	protein coding gene	no	ENST00000471307.6	1.213	0.604	0.857	0.002(20)	0.011(8)	0.29(5039)	non tumor-specific	alt_3prime	yes
UN_LINC01571_LS0004	chr16:51771672|51772379:+	LINC01571	long intergenic non-protein coding RNA 1571	lncRNA gene	no	.	2.981	2.181	0.000	0.004(35)	0.016(11)	0(0)	non tumor-specific	nAS	no
AC016582.1_LS003	chr19:37833514|37836893:-	AC016582.1	-	pseudogene	no	ENST00000592640.5;ENST00000636341.1;ENST00000433142.6;ENST00000587395.5	3.801	0.000	0.703	0.013(127)	0(0)	0.007(128)	non tumor-specific	nAS	yes
MIB1_LS016	chr18:21819646|21838365:+	MIB1	mindbomb E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000578646.5;ENST00000261537.6	16.126	10.963	6.430	0.849(8136)	0.946(664)	0.935(16255)	non tumor-specific	nAS	yes
UN_LINC02535_LS0002	chr6:85389557|85389940:-	LINC02535	long intergenic non-protein coding RNA 2535	lncRNA gene	no	.	2.056	2.267	0.000	0.014(132)	0.06(42)	0(0)	non tumor-specific	nAS	no
SSPO_LS010	chr7:149778939|149782182:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000486824.3	0.318	0.000	0.704	0.001(13)	0(0)	0.043(750)	non tumor-specific	nAS	yes
UN_LMTK3_LS0043	chr19:48501562|48501814:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	.	1.479	0.682	0.000	0.092(882)	0.081(57)	0(0)	non tumor-specific	alt_5prime	no
L34079.1_LS002	chr19:43561020|43592868:-	L34079.1	-	protein coding gene	no	ENST00000594374.1	0.060	0.058	0.875	0.465(4456)	0.383(269)	0.351(6102)	non tumor-specific	nAS	yes
UN_GLS_LS0032	chr2:190910321|190920215:+	GLS	glutaminase 2	protein coding gene	no	.	3.338	0.779	0.000	0.012(115)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
UN_DDR1_LS0071	chr6:30892164|30892379:-	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	.	2.885	0.108	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MST1R_LS0037	chr3:49902430|49903464:+	MST1R	macrophage stimulating 1 receptor	protein coding gene	yes	.	0.707	0.243	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
STAC2_LS006	chr17:39214330|39214791:-	STAC2	SH3 and cysteine rich domain 2	protein coding gene	no	ENST00000333461.5;ENST00000584501.1	14.653	15.520	6.238	0.263(2524)	0.46(323)	0.716(12449)	non tumor-specific	alt_3prime;exon_skip	yes
BCL10_LS006	chr1:85270906|85276296:-	BCL10	BCL10 immune signaling adaptor	protein coding gene	yes	ENST00000648566.1;ENST00000370580.6;ENST00000620248.2;ENST00000649434.1	8.347	9.419	10.874	0.977(9363)	0.987(693)	0.972(16887)	non tumor-specific	nAS	yes
AC008440.1_LS002	chr19:53857964|53863080:-	AC008440.1	-	lncRNA gene	no	ENST00000455835.2	0.409	0.027	0.648	0.018(169)	0.026(18)	0.025(431)	non tumor-specific	nAS	yes
LIPM_LS007	chr10:88815503|88816816:+	LIPM	lipase family member M	protein coding gene	no	ENST00000404743.8;ENST00000539337.2	4.366	0.714	31.305	0.015(142)	0.017(12)	0.111(1927)	non tumor-specific	alt_3prime	yes
DCAF1_LS022	chr3:51463227|51466806:-	DCAF1	DDB1 and CUL4 associated factor 1	protein coding gene	no	ENST00000504652.5	0.105	0.048	0.608	0.063(599)	0.068(48)	0.047(816)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BCOR_LS0011	chrX:40063810|40064336:-	BCOR	BCL6 corepressor	protein coding gene	no	.	3.106	0.471	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_RNF157_LS0024	chr17:76145523|76147294:+	RNF157	ring finger protein 157	protein coding gene	no	.	1.476	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MROH4P_UP_LS0010	chr8:142599530|142599982:-	MROH4P	maestro heat like repeat family member 4, pseudogene	pseudogene	no	.	13.239	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MPHOSPH8_LS002	chr13:19642270|19646443:+	MPHOSPH8	M-phase phosphoprotein 8	protein coding gene	no	ENST00000361479.9	33.120	38.006	50.638	0.984(9431)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
GPT_LS002	chr8:144504466|144504604:+	GPT	glutamic--pyruvic transaminase	protein coding gene	no	ENST00000528431.5;ENST00000527165.5;ENST00000394955.2;ENST00000531330.5;ENST00000354769.8;ENST00000534702.5;ENST00000527961.1	5.466	25.123	10.045	0.668(6400)	0.855(600)	0.833(14473)	non tumor-specific	alt_3prime;intron_retention	yes
WDR7_LS021	chr18:56757352|56758865:+	WDR7	WD repeat domain 7	protein coding gene	no	ENST00000357574.7;ENST00000615645.4;ENST00000254442.7;ENST00000591524.1	6.864	6.277	5.732	0.836(8005)	0.944(663)	0.954(16588)	non tumor-specific	nAS	yes
DENND4A_LS002	chr15:65661987|65664330:-	DENND4A	DENN domain containing 4A	protein coding gene	no	ENST00000443035.7;ENST00000431932.6;ENST00000635620.1;ENST00000562540.1	14.267	9.542	24.677	0.972(9308)	0.991(696)	0.979(17017)	non tumor-specific	nAS	yes
UN_GAPLINC_LS0004	chr18:3467203|3478756:+	GAPLINC	gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA	lncRNA gene	no	.	3.804	0.629	0.000	0.019(186)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_PRELID3BP6_UP_LS0006	chr5:42889688|42891307:+	PRELID3BP6	PRELI domain containing 3B pseudogene 6	pseudogene	no	.	2.259	0.295	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SLC35D2_LS0002	chr9:96320177|96320998:-	SLC35D2	solute carrier family 35 member D2	protein coding gene	no	.	1.464	0.036	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PARG_LS0003	chr10:49819491|49820165:-	PARG	poly(ADP-ribose) glycohydrolase	protein coding gene	no	.	5.133	2.203	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
RALGAPB_LS024	chr20:38535207|38539776:+	RALGAPB	Ral GTPase activating protein non-catalytic subunit beta	protein coding gene	no	ENST00000397042.7;ENST00000262879.10;ENST00000397040.5;ENST00000438490.2;ENST00000461423.1;ENST00000632792.1	24.104	16.554	11.313	0.945(9056)	0.976(685)	0.97(16862)	non tumor-specific	exon_skip	yes
UN_PKD1L2_LS0016	chr16:81122335|81123651:-	PKD1L2	polycystin 1 like 2 (gene/pseudogene)	pseudogene	no	.	2.785	1.172	0.000	0.002(19)	0.011(8)	0(0)	non tumor-specific	nAS	no
NPEPPS_LS017	chr17:47582712|47582827:+	NPEPPS	aminopeptidase puromycin sensitive	protein coding gene	no	ENST00000534691.1	0.296	0.000	0.683	0.013(127)	0.013(9)	0.166(2878)	non tumor-specific	intron_retention	yes
UN_CDHR5_LS0026	chr11:618702|618733:+	CDHR5	cadherin related family member 5	protein coding gene	no	.	14.472	8.486	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
LINC01973_LS001	chr17:77883538|77883922:-	LINC01973	long intergenic non-protein coding RNA 1973	lncRNA gene	no	ENST00000374983.3	0.103	0.000	0.863	0.007(66)	0.001(1)	0.013(233)	non tumor-specific	nAS	yes
ACKR2_LS012	chr3:42839279|42864466:+	ACKR2	atypical chemokine receptor 2	protein coding gene	no	ENST00000497921.2	0.807	0.319	0.708	0.158(1516)	0.266(187)	0.089(1552)	non tumor-specific	nAS	yes
LIPA_LS019	chr10:89293668|89314543:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	ENST00000487618.5	0.477	0.118	1.288	0.025(242)	0.011(8)	0.268(4666)	non tumor-specific	exon_skip	yes
ANGPT1_LS011	chr8:107322128|107336150:-	ANGPT1	angiopoietin 1	protein coding gene	no	ENST00000517746.5;ENST00000297450.7;ENST00000520734.5;ENST00000520052.1	8.709	8.420	5.193	0.544(5210)	0.826(580)	0.827(14381)	non tumor-specific	exon_skip	yes
AP4S1_LS001	chr14:31025298|31066126:+	AP4S1	adaptor related protein complex 4 subunit sigma 1	protein coding gene	no	ENST00000557346.5;ENST00000622409.4	0.135	0.112	0.681	0.347(3323)	0.415(291)	0.103(1790)	non tumor-specific	alt_5prime	yes
UN_ZNF658_LS0003	chr9:66903576|66908256:+	ZNF658	zinc finger protein 658	protein coding gene	no	.	1.655	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TTF2_LS011	chr1:117081947|117084018:+	TTF2	transcription termination factor 2	protein coding gene	no	ENST00000369466.8	12.946	3.816	3.426	0.832(7971)	0.828(581)	0.883(15347)	non tumor-specific	exon_skip	yes
PLEKHG6_LS004	chr12:6312364|6313629:+	PLEKHG6	pleckstrin homology and RhoGEF domain containing G6	protein coding gene	no	ENST00000011684.11;ENST00000536531.5;ENST00000396988.7	12.977	14.102	6.478	0.668(6399)	0.818(574)	0.478(8303)	non tumor-specific	alt_3prime	yes
UN_SERPINF1_LS0028	chr17:1777366|1777404:-	SERPINF1	serpin family F member 1	protein coding gene	no	.	6.085	2.549	0.000	0.044(417)	0.064(45)	0(0)	non tumor-specific	nAS	no
PTPN23_LS018	chr3:47407186|47407309:+	PTPN23	protein tyrosine phosphatase non-receptor type 23	protein coding gene	yes	ENST00000602307.5;ENST00000265562.4	43.339	26.875	35.553	0.968(9273)	0.987(693)	0.979(17016)	non tumor-specific	alt_5prime;exon_skip	yes
MFGE8_LS012	chr15:88901735|88903937:-	MFGE8	milk fat globule EGF and factor V/VIII domain containing	protein coding gene	no	.;.;.	4.943	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FP671120.1_LS0258	chr21:8216581|8217023:+	FP671120.1	-	lncRNA gene	no	.	299.049	88.407	0.000	0.043(413)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_PALLD_LS0054	chr4:168891057|168903757:+	PALLD	palladin, cytoskeletal associated protein	protein coding gene	no	.	2.082	1.750	0.000	0.031(294)	0.026(18)	0(0)	non tumor-specific	exon_skip	no
LINC01748_LS004	chr1:60529249|60540249:-	LINC01748	long intergenic non-protein coding RNA 1748	lncRNA gene	no	ENST00000634836.1	3.356	0.106	1.022	0.029(279)	0.003(2)	0.129(2242)	non tumor-specific	nAS	yes
AC133555.1_LS001	chr16:29479030|29482485:+	AC133555.1	-	pseudogene	no	ENST00000546408.1	0.080	0.054	0.601	0.212(2028)	0.246(173)	0.001(24)	non tumor-specific	nAS	yes
FRG2_LS004	chr4:190026768|190027027:-	FRG2	FSHD region gene 2	protein coding gene	no	ENST00000504750.5	4.177	0.560	0.682	0.02(194)	0.074(52)	0.001(20)	non tumor-specific	alt_3prime	yes
UN_LINC01527_UP_LS0081	chr1:153003105|153032431:-	LINC01527	long intergenic non-protein coding RNA 1527	lncRNA gene	no	.	36.629	9.397	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
VPS45_LS019	chr1:150081997|150082716:+	VPS45	symbol withdrawn, see [HGNC:14579](/data/gene-symbol-report/#!/hgnc_id/HGNC:14579)	protein coding gene	no	ENST00000643970.1;ENST00000535106.5;ENST00000369130.7;ENST00000369128.9;ENST00000611412.4;ENST00000644510.2;ENST00000491789.2;ENST00000642919.1;ENST00000419023.3;ENST00000644526.1;ENST00000477558.2;ENST00000644704.1	25.067	16.016	48.314	0.991(9490)	0.996(699)	0.979(17018)	non tumor-specific	exon_skip	yes
ABCB7_LS022	chrX:75099061|75112886:-	ABCB7	ATP binding cassette subfamily B member 7	protein coding gene	no	ENST00000645829.1;ENST00000253577.8;ENST00000644766.1;ENST00000373394.7;ENST00000529949.5;ENST00000526404.1;ENST00000643632.1	22.458	15.177	11.311	0.957(9172)	0.986(692)	0.971(16882)	non tumor-specific	exon_skip	yes
ALDH1A3_LS020	chr15:100905687|100907121:+	ALDH1A3	aldehyde dehydrogenase 1 family member A3	protein coding gene	no	ENST00000329841.9;ENST00000346623.6;ENST00000558869.1	35.263	25.918	11.616	0.866(8295)	0.964(677)	0.917(15940)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SCARA3_LS0020	chr8:27658611|27658645:+	SCARA3	scavenger receptor class A member 3	protein coding gene	no	.	24.756	7.553	0.000	0.009(88)	0.013(9)	0(0)	non tumor-specific	intron_retention	no
UN_AC021683.2_LS0057	chr17:77561920|77562663:-	AC021683.2	-	lncRNA gene	no	.	8.105	0.455	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
FANCM_LS007	chr14:45154052|45154697:+	FANCM	FA complementation group M	protein coding gene	no	ENST00000556036.5;ENST00000267430.9;ENST00000542564.6	1.522	0.733	1.093	0.39(3735)	0.436(306)	0.54(9388)	non tumor-specific	exon_skip	yes
UN_ZBTB26_LS0011	chr9:122919944|122931441:-	ZBTB26	zinc finger and BTB domain containing 26	protein coding gene	no	.	2.101	1.100	0.000	0.32(3069)	0.366(257)	0(0)	non tumor-specific	alt_5prime	no
UN_BRD4_LS0139	chr19:15273133|15330084:-	BRD4	bromodomain containing 4	protein coding gene	yes	.	1.143	0.061	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRPL1_LS012	chr4:77909372|77949797:+	MRPL1	mitochondrial ribosomal protein L1	protein coding gene	no	ENST00000315567.12;ENST00000504901.2	95.980	57.875	36.924	0.997(9556)	0.997(700)	0.977(16981)	non tumor-specific	exon_skip	yes
UN_LINC00299_UP_LS0018	chr2:8440291|8440967:-	LINC00299	long intergenic non-protein coding RNA 299	lncRNA gene	no	.	1.045	0.113	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
RHBDF1_LS036	chr16:65039|76253:-	RHBDF1	rhomboid 5 homolog 1	protein coding gene	no	ENST00000450643.5;ENST00000472390.1	0.072	0.066	1.912	0.258(2475)	0.333(234)	0.612(10634)	non tumor-specific	nAS	yes
UN_C15orf38-AP3S2_LS0017	chr15:89835147|89835404:+	C15orf38-AP3S2	ARPIN-AP3S2 readthrough	protein coding gene	no	.	1.333	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
RGPD5_LS016	chr2:109819783|109822050:+	RGPD5	RANBP2 like and GRIP domain containing 5	protein coding gene	no	ENST00000413468.1	0.046	0.008	0.657	0.032(305)	0.041(29)	0.005(80)	non tumor-specific	alt_3prime	yes
UN_CUEDC1_LS0026	chr17:57866544|57867623:-	CUEDC1	CUE domain containing 1	protein coding gene	no	.	4.284	0.345	0.000	0.018(172)	0.006(4)	0(0)	non tumor-specific	intron_retention;mutex_exons	no
PIF1_LS011	chr15:64819223|64819847:-	PIF1	PIF1 5'-to-3' DNA helicase	protein coding gene	no	ENST00000268043.8;ENST00000333425.10;ENST00000559239.1;ENST00000558380.1	2.179	0.299	2.387	0.699(6700)	0.271(190)	0.782(13596)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM14C_UP_LS0007	chr6:10691319|10697321:+	TMEM14C	transmembrane protein 14C	protein coding gene	no	.	2.425	0.932	0.000	0.051(489)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_AC002378.1_UP_LS0013	chr22:30246797|30248158:-	AC002378.1	-	lncRNA gene	no	.	1.327	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PEX19_LS010	chr1:160282502|160282826:-	PEX19	peroxisomal biogenesis factor 19	protein coding gene	no	ENST00000533104.1	0.164	0.098	0.706	0.772(7398)	0.895(628)	0.246(4278)	non tumor-specific	alt_5prime	yes
UN_TYW3_LS0004	chr1:74736926|74737014:-	TYW3	tRNA-yW synthesizing protein 3 homolog	protein coding gene	no	.	3.379	1.314	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MLANA_LS0014	chr9:5906995|5908640:+	MLANA	melan-A	protein coding gene	yes	.	45.836	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_PSORS1C1_LS0025	chr6:31129645|31138359:+	PSORS1C1	psoriasis susceptibility 1 candidate 1	protein coding gene	no	.	2.914	0.556	0.000	0.101(970)	0.048(34)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_SLC44A3_LS0001	chr1:94820478|94820959:+	SLC44A3	solute carrier family 44 member 3	protein coding gene	no	.	1.487	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_STRA6_LS0025	chr15:74185055|74185311:-	STRA6	signaling receptor and transporter of retinol STRA6	protein coding gene	yes	.	3.407	0.115	0.000	0.026(245)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
PRKDC_LS067	chr8:47915418|47918277:-	PRKDC	protein kinase, DNA-activated, catalytic subunit	protein coding gene	no	ENST00000314191.6;ENST00000338368.7	12.201	5.285	4.755	0.787(7537)	0.87(611)	0.893(15530)	non tumor-specific	exon_skip	yes
BCL11A_LS022	chr2:60541925|60545971:-	BCL11A	BAF chromatin remodeling complex subunit BCL11A	protein coding gene	yes	ENST00000409351.5	0.066	0.037	1.196	0.055(523)	0.087(61)	0.144(2506)	non tumor-specific	alt_3prime	yes
SLC16A4_LS010	chr1:110381143|110382834:-	SLC16A4	solute carrier family 16 member 4	protein coding gene	no	ENST00000472422.6	2.440	3.383	0.789	0.458(4389)	0.705(495)	0.224(3895)	non tumor-specific	exon_skip	yes
UN_RPS2P46_LS0087	chr17:19446695|19446816:-	RPS2P46	ribosomal protein S2 pseudogene 46	pseudogene	no	.	45.822	3.510	0.000	0.006(56)	0.003(2)	0(0)	non tumor-specific	nAS	no
BCRP2_LS006	chr22:21118309|21118787:+	BCRP2	DDB1 and CUL4 associated factor 5	pseudogene	no	ENST00000461808.5;ENST00000447763.1	0.790	0.072	0.835	0.056(538)	0.047(33)	0.016(275)	non tumor-specific	nAS	yes
ZNF702P_LS008	chr19:52986846|52990093:-	ZNF702P	zinc finger protein 702, pseudogene	pseudogene	no	ENST00000599665.5;ENST00000600949.5;ENST00000595137.1	0.270	0.358	1.093	0.443(4248)	0.652(458)	0.514(8935)	non tumor-specific	nAS	yes
ME3_LS005	chr11:86448255|86449889:-	ME3	protocadherin gamma subfamily A, 5	protein coding gene	no	ENST00000393324.7;ENST00000543262.5;ENST00000524826.5;ENST00000530520.5	31.400	19.595	44.810	0.939(8996)	0.972(682)	0.968(16820)	non tumor-specific	exon_skip	yes
CMAHP_LS024	chr6:25137823|25369946:-	CMAHP	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudogene	no	ENST00000643807.1	1.268	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
FAM66B_LS002	chr8:7319842|7323100:-	FAM66B	family with sequence similarity 66 member B	lncRNA gene	no	ENST00000606573.1	0.172	0.062	0.696	0.002(15)	0.003(2)	0(4)	non tumor-specific	nAS	yes
UN_TMEM45B_LS0029	chr11:129839702|129850582:+	TMEM45B	transmembrane protein 45B	protein coding gene	no	.	0.894	1.693	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_H3F3C_UP_LS0002	chr12:31802163|31804675:-	H3F3C	H3.5 histone	protein coding gene	no	.	3.487	1.060	0.000	0.088(847)	0.048(34)	0(0)	non tumor-specific	nAS	no
UN_SYTL3_LS0013	chr6:158663378|158665387:+	SYTL3	synaptotagmin like 3	protein coding gene	no	.	1.616	0.635	0.000	0.011(101)	0.026(18)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
BOC_LS033	chr3:113280005|113280558:+	BOC	BOC cell adhesion associated, oncogene regulated	protein coding gene	yes	ENST00000495514.5;ENST00000273395.8;ENST00000355385.7;ENST00000466059.5;ENST00000479182.5;ENST00000463971.1	11.901	13.765	27.735	0.879(8418)	0.916(643)	0.932(16204)	non tumor-specific	alt_3prime	yes
UN_AL353705.1_UP_LS0005	chr9:78235515|78235991:-	AL353705.1	-	pseudogene	no	.	1.087	0.053	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SHROOM4_LS006	chrX:50608184|50627614:-	SHROOM4	shroom family member 4	protein coding gene	no	ENST00000376020.6;ENST00000289292.11;ENST00000460112.3	4.728	5.208	4.065	0.656(6288)	0.802(563)	0.871(15144)	non tumor-specific	exon_skip	yes
WDFY2_LS007	chr13:51727790|51739049:+	WDFY2	WD repeat and FYVE domain containing 2	protein coding gene	no	ENST00000298125.6	22.440	15.837	16.216	0.953(9132)	0.987(693)	0.977(16975)	non tumor-specific	exon_skip	yes
UN_AC023669.2_UP_LS0004	chr7:46186700|46263900:+	AC023669.2	-	lncRNA gene	no	.	4.816	0.329	0.000	0.008(73)	0.009(6)	0(0)	non tumor-specific	nAS	no
HECW1_LS041	chr7:43554790|43561815:+	HECW1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000395891.6;ENST00000453890.5	3.845	2.333	1.570	0.085(811)	0.145(102)	0.373(6478)	non tumor-specific	nAS	yes
UN_BAG3_LS0004	chr10:119651855|119655561:+	BAG3	BAG cochaperone 3	protein coding gene	no	.	2.834	1.327	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_LNCTAM34A_LS0017	chr1:9183807|9190999:+	LNCTAM34A	long non coding transcriptional activator of miR34a	lncRNA gene	no	.	1.378	0.167	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
GNB3_LS014	chr12:6843237|6843363:+	GNB3	G protein subunit beta 3	protein coding gene	no	ENST00000540458.5;ENST00000229264.7;ENST00000541257.5;ENST00000541978.5;ENST00000435982.6;ENST00000539127.5;ENST00000537035.1	1.343	0.460	4.287	0.287(2748)	0.215(151)	0.865(15028)	non tumor-specific	intron_retention	yes
UTP4_LS021	chr16:69153680|69154393:+	UTP4	UTP4 small subunit processome component	protein coding gene	no	ENST00000314423.11;ENST00000562237.5;ENST00000563094.5	90.338	48.404	43.916	0.991(9492)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
TTC6_LS049	chr14:37927974|37936234:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000533625.5	3.008	0.227	0.937	0.004(43)	0.001(1)	0.073(1271)	non tumor-specific	exon_skip;mutex_exons	yes
UN_COLCA2_LS0022	chr11:111300017|111300426:+	COLCA2	colorectal cancer associated 2	protein coding gene	no	.	1.644	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
COL13A1_LS053	chr10:69937715|69944125:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000479733.5;ENST00000357811.7;ENST00000517713.5;ENST00000522165.5;ENST00000520133.5;ENST00000456019.1	4.692	3.211	3.506	0.626(5993)	0.61(428)	0.812(14122)	non tumor-specific	exon_skip	yes
UN_PEBP1_LS0084	chr12:118145320|118145344:-	PEBP1	phosphatidylethanolamine binding protein 1	protein coding gene	yes	.	12.242	0.787	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADAMTSL3_LS035	chr15:84031432|84036773:+	ADAMTSL3	ADAMTS like 3	protein coding gene	no	ENST00000286744.9;ENST00000567476.1	4.550	6.721	5.766	0.406(3891)	0.872(612)	0.836(14526)	non tumor-specific	exon_skip	yes
UN_AC018362.3_LS0031	chr15:42539218|42539529:-	AC018362.3	-	protein coding gene	no	.	1.892	0.627	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KRT8P20_UP_LS0002	chr7:38336826|38342256:+	KRT8P20	keratin 8 pseudogene 20	pseudogene	no	.	4.033	0.954	0.000	0.024(227)	0.043(30)	0(0)	non tumor-specific	nAS	no
AL353608.3_LS009	chr9:68328690|68330126:+	AL353608.3	-	lncRNA gene	no	ENST00000603200.5;ENST00000414223.4	0.671	0.194	1.224	0.026(251)	0.013(9)	0.066(1139)	non tumor-specific	exon_skip	yes
GPR107_LS020	chr9:130124964|130127483:+	GPR107	G protein-coupled receptor 107	protein coding gene	no	ENST00000372406.5;ENST00000347136.10;ENST00000372410.7;ENST00000493417.5;ENST00000610997.1;ENST00000483935.1	24.999	17.240	19.795	0.988(9469)	0.994(698)	0.979(17009)	non tumor-specific	exon_skip	yes
PLD3_LS054	chr19:40371873|40374481:+	PLD3	phospholipase D family member 3	protein coding gene	no	ENST00000409419.5;ENST00000409587.5;ENST00000409735.8;ENST00000356508.9;ENST00000409281.5;ENST00000475983.1	773.278	401.261	286.458	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
DYNC1I2_LS013	chr2:171692894|171707287:+	DYNC1I2	dynein cytoplasmic 1 intermediate chain 2	protein coding gene	no	ENST00000452242.5;ENST00000340296.8;ENST00000508530.5;ENST00000409197.5;ENST00000409317.5;ENST00000435234.5;ENST00000425485.5;ENST00000430778.5;ENST00000422646.1;ENST00000452242.5;ENST00000340296.8;ENST00000508530.5;ENST00000409197.5;ENST00000409317.5;ENST00000435234.5;ENST00000425485.5;ENST00000430778.5;ENST00000422646.1	49.649	37.770	75.248	0.996(9545)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
MYL12B_LS006	chr18:3277414|3277765:+	MYL12B	myosin light chain 12B	protein coding gene	no	ENST00000648965.1;ENST00000237500.9;ENST00000581193.5;ENST00000400175.9;ENST00000584539.1	1737.679	1118.996	890.459	0.994(9524)	0.984(691)	0.979(17021)	non tumor-specific	alt_3prime	yes
SGO1-AS1_LS011	chr3:20360684|20381175:+	SGO1-AS1	SGO1 antisense RNA 1	lncRNA gene	no	ENST00000634618.1	1.441	0.000	0.678	0(2)	0(0)	0.046(797)	non tumor-specific	nAS	yes
LINC02009_LS004	chr3:46422798|46423545:-	LINC02009	long intergenic non-protein coding RNA 2009	lncRNA gene	no	ENST00000635852.1	4.130	0.154	0.759	0.037(359)	0.009(6)	0.076(1324)	non tumor-specific	nAS	yes
UN_PAIP2_LS0018	chr5:139364750|139368733:+	PAIP2	poly(A) binding protein interacting protein 2	protein coding gene	yes	.	44.383	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_TNFRSF1A_LS0028	chr12:6329398|6329463:+	TNFRSF1A	TNF receptor superfamily member 1A	protein coding gene	no	.	2.572	0.128	0.000	0.014(134)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAD9B_LS011	chr12:110506693|110515050:+	RAD9B	RAD9 checkpoint clamp component B	protein coding gene	no	ENST00000433301.5	0.401	0.151	0.782	0.054(516)	0.054(38)	0.267(4636)	non tumor-specific	exon_skip	yes
SPTBN4_LS011	chr19:40502507|40502775:+	SPTBN4	spectrin beta, non-erythrocytic 4	protein coding gene	no	ENST00000595535.5;ENST00000392025.5;ENST00000352632.7;ENST00000598249.5;ENST00000338932.7	1.756	1.435	2.187	0.126(1209)	0.105(74)	0.744(12925)	non tumor-specific	nAS	yes
UN_PNLIPRP2_LS0001	chr10:116620978|116623945:+	PNLIPRP2	pancreatic lipase related protein 2 (gene/pseudogene)	pseudogene	no	.	1.554	1.177	0.000	0.005(51)	0.011(8)	0(0)	non tumor-specific	nAS	no
SLC6A9_LS023	chr1:44011722|44024248:-	SLC6A9	solute carrier family 6 member 9	protein coding gene	no	ENST00000466926.1	0.037	0.011	0.810	0.22(2105)	0.178(125)	0.251(4363)	non tumor-specific	exon_skip	yes
UN_AC073111.3_LS0023	chr7:150371155|150372661:-	AC073111.3	-	protein coding gene	no	.	1.431	0.690	0.000	0.011(109)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL606834.2_UP_LS0001	chr14:50830517|50831458:-	AL606834.2	-	lncRNA gene	no	.	1.223	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CPNE4_LS025	chr3:132034790|132035335:-	CPNE4	copine 4	protein coding gene	no	ENST00000506687.5	0.143	0.015	0.719	0.031(298)	0.031(22)	0.004(75)	non tumor-specific	alt_3prime;intron_retention	yes
AP001596.1_LS004	chr21:26416661|26470751:+	AP001596.1	-	lncRNA gene	no	ENST00000444306.1	0.016	0.003	0.833	0.098(936)	0.068(48)	0.04(690)	non tumor-specific	nAS	yes
UN_SDR39U1_LS0015	chr14:24441795|24441885:-	SDR39U1	short chain dehydrogenase/reductase family 39U member 1	protein coding gene	no	.	4.542	0.242	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_MECP2_LS0031	chrX:154048660|154092184:-	MECP2	methyl-CpG binding protein 2	protein coding gene	no	.	1.077	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TGM7_LS005	chr15:43282086|43282517:-	TGM7	transglutaminase 7	protein coding gene	no	ENST00000452443.2	3.303	0.467	0.818	0.01(94)	0.017(12)	0.022(376)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LONP2_LS0016	chr16:48270274|48275087:+	LONP2	lon peptidase 2, peroxisomal	protein coding gene	no	.	0.736	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AGO2_LS0001	chr8:140520688|140531423:-	AGO2	argonaute RISC catalytic component 2	protein coding gene	no	.	2.126	0.007	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP98_UP_LS0001	chr2:75711034|75724643:+	RNA5SP98	RNA, 5S ribosomal pseudogene 98	no	no	.	0.999	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RANBP2_LS0014	chr2:108758548|108763237:+	RANBP2	RAN binding protein 2	protein coding gene	no	.	1.759	0.529	0.000	0.012(113)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
GABRA2_LS024	chr4:46388716|46475067:-	GABRA2	gamma-aminobutyric acid type A receptor subunit alpha2	protein coding gene	no	ENST00000510861.5	0.000	0.000	0.665	0(4)	0(0)	0.001(12)	non tumor-specific	nAS	yes
MIS12_LS004	chr17:5486420|5488823:+	MIS12	MIS12 kinetochore complex component	protein coding gene	no	ENST00000576988.1;ENST00000576988.1	0.108	0.081	0.827	0.442(4236)	0.595(418)	0.377(6552)	non tumor-specific	alt_5prime;exon_skip	yes
SULT6B1_LS002	chr2:37171590|37175132:-	SULT6B1	sulfotransferase family 6B member 1	protein coding gene	no	ENST00000535679.5;ENST00000407963.1	2.132	0.000	0.778	0(4)	0(0)	0.01(180)	non tumor-specific	nAS	yes
SERPINE3_LS003	chr13:51340925|51341075:+	SERPINE3	serpin family E member 3	protein coding gene	no	ENST00000419898.2	0.137	0.000	0.713	0.001(12)	0(0)	0.014(237)	non tumor-specific	alt_5prime	yes
PDIA2_LS012	chr16:285703|286371:+	PDIA2	protein disulfide isomerase family A member 2	protein coding gene	no	ENST00000435833.1	7.063	0.892	2.515	0.133(1279)	0.03(21)	0.27(4694)	non tumor-specific	alt_3prime	yes
UN_FBXO31_LS0018	chr16:87343765|87345028:-	FBXO31	F-box protein 31	protein coding gene	yes	.	3.671	0.412	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
MKS1_LS016	chr17:58210724|58212378:-	MKS1	MKS transition zone complex subunit 1	protein coding gene	no	.;.	1.401	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
NFYC_LS002	chr1:40691867|40723689:+	NFYC	nuclear transcription factor Y subunit gamma	protein coding gene	no	ENST00000453631.5	0.073	0.057	0.720	0.249(2385)	0.248(174)	0.282(4894)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MC1R_LS0003	chr16:89913649|89915008:+	MC1R	melanocortin 1 receptor	protein coding gene	no	.	1.313	0.051	0.000	0.007(70)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AL645929.1_UP_LS0047	chr6:29889428|29927419:-	AL645929.1	-	pseudogene	no	.	5.235	4.677	0.000	0.04(388)	0.064(45)	0(0)	non tumor-specific	nAS	no
UN_FBLN1_LS0035	chr22:45548744|45550435:+	FBLN1	fibulin 1	protein coding gene	yes	.	64.450	14.326	0.000	0.008(77)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
KRT26_LS007	chr17:40771236|40771673:-	KRT26	keratin 26	protein coding gene	no	ENST00000335552.4	10.637	0.963	3.335	0.001(5)	0.001(1)	0.023(397)	non tumor-specific	nAS	yes
BMPR1A_LS002	chr10:86838979|86843406:+	BMPR1A	bone morphogenetic protein receptor type 1A	protein coding gene	yes	ENST00000480152.2	1.360	1.777	1.831	0.728(6971)	0.852(598)	0.662(11504)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NPTX2_LS0016	chr7:98628893|98628975:-	NPTX2	neuronal pentraxin 2	protein coding gene	no	.	19.484	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SYCP2L_LS010	chr6:10906054|10907542:+	SYCP2L	synaptonemal complex protein 2 like	protein coding gene	no	ENST00000341041.8;ENST00000283141.10;ENST00000543878.5	1.053	0.134	0.914	0.073(702)	0.019(13)	0.325(5655)	non tumor-specific	nAS	yes
C14orf93_LS050	chr14:23005130|23010017:-	C14orf93	chromosome 14 open reading frame 93	protein coding gene	no	ENST00000554179.5;ENST00000557513.5;ENST00000553316.1	0.068	0.049	0.652	0.119(1142)	0.162(114)	0.111(1933)	non tumor-specific	exon_skip;mutex_exons	yes
AC097478.1_LS009	chr4:89691405|89719826:+	AC097478.1	-	lncRNA gene	no	ENST00000507916.6	4.742	0.370	1.221	0.072(687)	0.036(25)	0.129(2248)	non tumor-specific	nAS	yes
UN_NIT1_LS0010	chr1:161119335|161119930:-	NIT1	nitrilase 1	protein coding gene	no	.	1.152	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COX14_UP_LS0003	chr12:50111380|50111505:+	COX14	cytochrome c oxidase assembly factor COX14	protein coding gene	no	.	5.133	10.823	0.000	0.002(22)	0.017(12)	0(0)	non tumor-specific	nAS	no
TAOK3_LS006	chr12:118172660|118177201:-	TAOK3	TAO kinase 3	protein coding gene	no	ENST00000419821.6;ENST00000392533.7;ENST00000537305.5;ENST00000537952.1	63.769	41.071	31.431	0.978(9366)	0.991(696)	0.979(17018)	non tumor-specific	exon_skip	yes
ACTN1_LS017	chr14:68882592|68882873:-	ACTN1	actinin alpha 1	protein coding gene	no	ENST00000193403.10;ENST00000556083.1;ENST00000394419.8;ENST00000438964.6;ENST00000376839.7;ENST00000538545.6	189.013	150.021	165.812	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ATP5F1B_LS0035	chr12:56640118|56643410:+	ATP5F1B	ATP synthase F1 subunit beta	protein coding gene	no	.	0.912	1.102	0.000	0.005(51)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SEC63_LS0009	chr6:107885484|107893482:-	SEC63	SEC63 homolog, protein translocation regulator	protein coding gene	no	.	5.064	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TRIB1_LS0006	chr8:125430586|125430691:-	TRIB1	tribbles pseudokinase 1	protein coding gene	yes	.	2.872	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
LYNX1_LS003	chr8:142775694|142777106:-	LYNX1	Ly6/neurotoxin 1	protein coding gene	no	ENST00000522906.1	0.363	0.391	2.158	0.215(2061)	0.402(282)	0.512(8892)	non tumor-specific	exon_skip	yes
UN_CD55_LS0005	chr1:207324750|207325624:+	CD55	CD55 molecule (Cromer blood group)	protein coding gene	no	.	35.553	35.735	0.000	0.01(93)	0.021(15)	0(0)	non tumor-specific	alt_3prime	no
UN_PDE7B_LS0003	chr6:135856007|135880769:-	PDE7B	phosphodiesterase 7B	protein coding gene	no	.	1.938	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TSPYL5_LS0003	chr8:97274745|97274947:+	TSPYL5	TSPY like 5	protein coding gene	no	.	1.084	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS1286	chr14:105742022|105769671:+	AC246787.2	-	lncRNA gene	no	.	10.776	0.721	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRAMD2A_LS024	chr15:72169939|72197731:-	GRAMD2A	GRAM domain containing 2A	protein coding gene	no	ENST00000309731.11	0.667	1.603	1.553	0.297(2846)	0.611(429)	0.352(6124)	non tumor-specific	nAS	yes
UN_TBCD_LS0093	chr17:82891713|82893547:+	TBCD	tubulin folding cofactor D	protein coding gene	no	.	6.915	1.222	0.000	0.004(34)	0.019(13)	0(0)	non tumor-specific	alt_5prime	no
UGP2_LS026	chr2:63857936|63882466:+	UGP2	UDP-glucose pyrophosphorylase 2	protein coding gene	no	ENST00000394417.6;ENST00000466642.5;ENST00000482668.5;ENST00000467648.6;ENST00000483108.5;ENST00000493222.5;ENST00000337130.9;ENST00000488245.6;ENST00000497883.5;ENST00000445915.6;ENST00000496334.6;ENST00000467999.6;ENST00000475462.5;ENST00000487042.5;ENST00000491621.5;ENST00000472047.5;ENST00000613823.1;ENST00000494536.5;ENST00000495020.1	107.103	142.821	124.515	0.994(9521)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ABI3BP_LS0001	chr3:100752945|100753819:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	.	4.364	2.017	0.000	0.005(50)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_HMBOX1_LS0027	chr8:29047453|29048960:+	HMBOX1	homeobox containing 1	protein coding gene	no	.	1.877	0.561	0.000	0.046(445)	0.058(41)	0(0)	non tumor-specific	alt_3prime	no
PNPLA2_LS003	chr11:818958|821717:+	PNPLA2	patatin like phospholipase domain containing 2	protein coding gene	no	.;.	2.257	18.569	0.000	0(1)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GABARAPL1_LS029	chr12:10214779|10218063:+	GABARAPL1	GABA type A receptor associated protein like 1	protein coding gene	no	ENST00000540424.5;ENST00000541960.5	0.151	0.381	10.659	0.59(5653)	0.54(379)	0.966(16799)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PHC1_LS010	chr12:8921065|8922633:+	PHC1	polyhomeotic homolog 1	protein coding gene	no	.;.	2.371	0.338	0.000	0.028(269)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ADCY4_LS003	chr14:24318778|24319098:-	ADCY4	adenylate cyclase 4	protein coding gene	no	ENST00000310677.8;ENST00000557056.5;ENST00000554577.5;ENST00000554068.6;ENST00000545213.5;ENST00000554781.5;ENST00000418030.6	10.623	12.020	33.228	0.749(7175)	0.91(639)	0.973(16914)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC011752.1_LS001	chr2:21320494|21396021:+	AC011752.1	-	lncRNA gene	no	ENST00000451476.1	1.990	0.000	0.628	0(1)	0(0)	0.005(83)	non tumor-specific	nAS	yes
CIAPIN1_LS010	chr16:57434212|57436656:-	CIAPIN1	cytokine induced apoptosis inhibitor 1	protein coding gene	no	ENST00000394391.8;ENST00000567518.5;ENST00000569370.5;ENST00000568940.5;ENST00000569979.5;ENST00000570000.5;ENST00000565786.5;ENST00000569246.5;ENST00000565368.5;ENST00000566284.1	66.439	37.603	43.337	0.996(9543)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TEX9_LS0026	chr15:56384031|56385232:+	TEX9	testis expressed 9	protein coding gene	no	.	1.343	0.126	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
EPB41L2_LS019	chr6:130870126|130878104:-	EPB41L2	erythrocyte membrane protein band 4.1 like 2	protein coding gene	no	ENST00000337057.7;ENST00000368128.6;ENST00000524581.5;ENST00000527423.5;ENST00000534166.1	5.891	8.219	30.213	0.934(8952)	0.963(676)	0.939(16327)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PPT2_LS001	chr6:32153636|32153999:+	PPT2	palmitoyl-protein thioesterase 2	protein coding gene	no	ENST00000395523.5	1.094	0.547	1.212	0.196(1879)	0.154(108)	0.481(8359)	non tumor-specific	intron_retention	yes
DIS3L2_LS001	chr2:231961765|232014835:+	DIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein coding gene	no	ENST00000273009.10;ENST00000325385.11;ENST00000409401.7;ENST00000390005.9;ENST00000445090.5	2.097	1.558	6.464	0.922(8829)	0.962(675)	0.962(16726)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MGA_LS0018	chr15:41707859|41710691:+	MGA	maltase-glucoamylase	protein coding gene	no	.	1.135	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RN7SL592P_UP_LS0003	chr9:2230688|2277950:-	RN7SL592P	RNA, 7SL, cytoplasmic 592, pseudogene	small non-coding RNA gene	no	.	2.957	0.513	0.000	0.006(54)	0.011(8)	0(0)	non tumor-specific	nAS	no
TAF5L_LS001	chr1:229595094|229602195:-	TAF5L	TATA-box binding protein associated factor 5 like	protein coding gene	no	ENST00000366676.5;ENST00000258281.6	23.150	13.175	18.993	0.957(9173)	0.947(665)	0.975(16943)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TBC1D9_LS0022	chr4:140701614|140717212:-	TBC1D9	TBC1 domain family member 9	protein coding gene	no	.	1.420	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CSF1_LS0111	chr1:109930256|109930792:-	CSF1	colony stimulating factor 1	protein coding gene	yes	.	0.986	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WASHC2C_LS0025	chr10:45784693|45787035:+	WASHC2C	WASH complex subunit 2C	protein coding gene	no	.	2.926	0.131	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CMYA5_LS020	chr5:79789104|79790970:+	CMYA5	cardiomyopathy associated 5	protein coding gene	no	ENST00000446378.2;ENST00000506603.5	7.724	7.317	11.564	0.497(4760)	0.648(455)	0.939(16330)	non tumor-specific	nAS	yes
NUP188_LS038	chr9:128998623|128999172:+	NUP188	nucleoporin 188	protein coding gene	no	ENST00000372577.2;ENST00000477069.5	40.372	17.369	33.745	0.985(9438)	0.991(696)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
PFKFB3_LS003	chr10:6164011|6213623:+	PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein coding gene	no	ENST00000639949.1	1.462	0.267	0.647	0.005(45)	0.003(2)	0.102(1778)	non tumor-specific	alt_5prime	yes
ACVR1_LS011	chr2:157799500|157806737:-	ACVR1	activin A receptor type 1	protein coding gene	no	ENST00000409283.6	0.004	0.005	0.670	0.413(3960)	0.51(358)	0.045(782)	non tumor-specific	nAS	yes
GPSM3_LS002	chr6:32191870|32192148:-	GPSM3	G protein signaling modulator 3	protein coding gene	no	ENST00000472768.5	4.031	3.422	2.498	0.937(8979)	0.96(674)	0.834(14501)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_GPR68_LS0016	chr14:91235179|91243109:-	GPR68	G protein-coupled receptor 68	protein coding gene	no	.	1.443	0.542	0.000	0.056(541)	0.061(43)	0(0)	non tumor-specific	nAS	no
UN_SDHAF1_LS0010	chr19:35995703|35995817:-	SDHAF1	succinate dehydrogenase complex assembly factor 1	protein coding gene	no	.	1.449	0.402	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
TSPO_LS003	chr22:43151604|43159210:+	TSPO	translocator protein	protein coding gene	no	ENST00000337554.7;ENST00000472378.1;ENST00000337554.7;ENST00000472378.1	79.766	57.388	169.640	0.938(8983)	0.952(668)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP005230.1_LS0096	chr18:2351429|2363315:+	AP005230.1	-	lncRNA gene	no	.	3.660	0.395	0.000	0.035(339)	0.003(2)	0(0)	non tumor-specific	nAS	no
PGBD2_LS009	chr1:248914559|248917279:+	PGBD2	piggyBac transposable element derived 2	protein coding gene	no	.;.	0.654	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LTF_LS002	chr3:46438129|46439296:-	LTF	lactotransferrin	protein coding gene	yes	ENST00000231751.8;ENST00000426532.6;ENST00000417439.5;ENST00000443496.5;ENST00000493056.5;ENST00000478874.2	36.140	87.702	6.999	0.747(7160)	0.92(646)	0.906(15750)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01837_LS006	chr19:31937301|31941621:-	LINC01837	long intergenic non-protein coding RNA 1837	lncRNA gene	no	ENST00000635947.1;ENST00000593211.1	11.897	0.000	0.738	0(2)	0(0)	0.004(68)	non tumor-specific	nAS	yes
UBAP2L_LS008	chr1:154221396|154225084:+	UBAP2L	ubiquitin associated protein 2 like	protein coding gene	no	ENST00000456325.5	1.706	0.670	1.922	0.886(8491)	0.885(621)	0.803(13962)	non tumor-specific	exon_skip	yes
TBP_LS005	chr6:170557083|170561791:+	TBP	TATA-box binding protein	protein coding gene	no	ENST00000421512.5;ENST00000392092.6;ENST00000616883.4;ENST00000230354.10;ENST00000423353.1;ENST00000636632.1	24.409	14.215	16.949	0.986(9449)	0.994(698)	0.978(17002)	non tumor-specific	exon_skip	yes
C11orf80_LS054	chr11:66843069|66843169:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	ENST00000525908.6;ENST00000360962.9;ENST00000527634.5;ENST00000540737.6;ENST00000642265.1;ENST00000532565.6;ENST00000525449.6;ENST00000532727.5;ENST00000531415.1	12.240	4.554	11.346	0.942(9027)	0.917(644)	0.956(16625)	non tumor-specific	intron_retention	yes
AL138694.1_LS001	chr13:108335572|108336088:+	AL138694.1	-	lncRNA gene	no	ENST00000636191.1	2.632	0.000	0.948	0(4)	0(0)	0.077(1344)	non tumor-specific	nAS	yes
EMBP1_LS003	chr1:121538420|121556510:+	EMBP1	embigin pseudogene 1	pseudogene	no	ENST00000618253.1;ENST00000648011.1	0.745	0.238	0.802	0.224(2148)	0.132(93)	0.189(3281)	non tumor-specific	nAS	yes
C22orf34_LS015	chr22:49623610|49624178:-	C22orf34	chromosome 22 open reading frame 34	lncRNA gene	no	ENST00000343999.1	0.253	0.000	0.696	0.002(15)	0(0)	0.052(896)	non tumor-specific	nAS	yes
LINC02328_LS006	chr14:86070967|86127950:+	LINC02328	long intergenic non-protein coding RNA 2328	lncRNA gene	no	ENST00000557195.5;ENST00000553668.2	5.246	1.371	1.643	0.2(1919)	0.131(92)	0.664(11537)	non tumor-specific	nAS	yes
UN_KRT17P1_LS0002	chr17:16841039|16841963:-	KRT17P1	keratin 17 pseudogene 1	pseudogene	no	.	0.283	0.007	0.934	0.012(114)	0.006(4)	0.002(43)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0112	chr14:105624380|105668124:+	AC246787.2	-	lncRNA gene	no	.	12.169	0.133	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
NUP210L_LS028	chr1:154100143|154104012:-	NUP210L	nucleoporin 210 like	protein coding gene	no	ENST00000368559.7;ENST00000271854.3	2.698	0.825	0.834	0.014(130)	0.01(7)	0.177(3080)	non tumor-specific	nAS	yes
ZHX1_LS004	chr8:123256171|123267273:-	ZHX1	zinc fingers and homeoboxes 1	protein coding gene	no	ENST00000297857.3;ENST00000395571.7;ENST00000522655.5;ENST00000522595.5;ENST00000524267.5	17.335	16.014	9.907	0.924(8851)	0.977(686)	0.954(16575)	non tumor-specific	nAS	yes
SRP54_LS017	chr14:35013902|35014744:+	SRP54	signal recognition particle 54	protein coding gene	no	ENST00000556994.5;ENST00000546080.5;ENST00000216774.10;ENST00000555557.5	109.936	66.486	69.632	0.986(9451)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_GMDS-DT_LS0100	chr6:2399037|2453964:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	.	0.342	0.031	0.000	0.007(69)	0.017(12)	0(0)	non tumor-specific	nAS	no
SCML4_LS008	chr6:107745143|107749684:-	SCML4	Scm polycomb group protein like 4	protein coding gene	no	.;.	1.456	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GPAT4_LS032	chr8:41618977|41620893:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	ENST00000396987.7;ENST00000521349.1;ENST00000396987.7;ENST00000521349.1	49.971	26.226	87.471	0.995(9535)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PHKB_LS033	chr16:47610920|47619130:+	PHKB	phosphorylase kinase regulatory subunit beta	protein coding gene	no	ENST00000568439.1	0.206	0.065	0.689	0.763(7308)	0.852(598)	0.113(1961)	non tumor-specific	nAS	yes
CERCAM_LS001	chr9:128412072|128419160:+	CERCAM	cerebral endothelial cell adhesion molecule	protein coding gene	no	ENST00000372842.5	18.808	11.552	22.788	0.03(291)	0.009(6)	0.259(4498)	non tumor-specific	exon_skip	yes
UN_LINC02137_LS0006	chr16:58423348|58433810:+	LINC02137	long intergenic non-protein coding RNA 2137	lncRNA gene	no	.	1.757	0.988	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC245054.2_UP_LS0005	chr22:22906789|22923471:+	AC245054.2	-	pseudogene	no	.	1.642	0.080	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
CAPS2_LS024	chr12:75323222|75325239:-	CAPS2	calcyphosine 2	protein coding gene	no	ENST00000409799.5;ENST00000409445.7;ENST00000393284.7;ENST00000328705.7;ENST00000493070.1	1.100	0.519	0.865	0.116(1116)	0.383(269)	0.395(6861)	non tumor-specific	alt_3prime;exon_skip	yes
UN_POLR2J4_LS0114	chr7:44014773|44016433:-	POLR2J4	RNA polymerase II subunit J4, pseudogene	pseudogene	no	.	13.471	0.096	0.000	0.018(177)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DCAKD_LS0009	chr17:45024003|45024079:+	DCAKD	dephospho-CoA kinase domain containing	protein coding gene	no	.	3.043	0.188	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC211476.2_UP_LS0006	chr7:72946304|73301166:-	AC211476.2	-	lncRNA gene	no	.	0.863	0.248	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
FTX_LS022	chrX:74281848|74293352:-	FTX	FTX transcript, XIST regulator	lncRNA gene	no	ENST00000602812.5;ENST00000602420.5;ENST00000603037.2;ENST00000430772.5	0.618	0.536	1.591	0.55(5266)	0.722(507)	0.736(12793)	non tumor-specific	nAS	yes
CPNE6_LS005	chr14:24071136|24071540:+	CPNE6	copine 6	protein coding gene	no	ENST00000559778.5	0.173	0.070	0.914	0.004(37)	0.001(1)	0.017(298)	non tumor-specific	intron_retention	yes
PAX4_LS002	chr7:127611206|127611535:-	PAX4	paired box 4	protein coding gene	yes	ENST00000341640.6;ENST00000639438.1;ENST00000463946.5	5.111	0.259	0.924	0.016(157)	0.01(7)	0.025(430)	non tumor-specific	alt_3prime	yes
AC092745.1_LS002	chr12:8322088|8323553:+	AC092745.1	-	lncRNA gene	no	ENST00000535746.5	0.190	0.201	0.672	0.025(236)	0.093(65)	0.004(68)	non tumor-specific	nAS	yes
UN_LINC02391_LS0013	chr12:92272616|92337465:-	LINC02391	long intergenic non-protein coding RNA 2391	lncRNA gene	no	.	2.620	0.172	0.000	0.02(187)	0.02(14)	0(0)	non tumor-specific	nAS	no
MLXIP_LS005	chr12:122129629|122129941:+	MLXIP	MLX interacting protein	protein coding gene	no	ENST00000319080.11;ENST00000535430.5;ENST00000539861.5	17.033	15.596	30.780	0.985(9438)	0.99(695)	0.979(17009)	non tumor-specific	exon_skip;intron_retention	yes
KAT2B_LS001	chr3:20040780|20072333:+	KAT2B	lysine acetyltransferase 2B	protein coding gene	no	ENST00000263754.4;ENST00000426228.1	2.769	3.705	10.472	0.796(7627)	0.942(661)	0.973(16920)	non tumor-specific	exon_skip	yes
UN_SH3BGRL_LS0017	chrX:81298299|81298332:-	SH3BGRL	SH3 domain binding glutamate rich protein like	protein coding gene	no	.	6.929	0.603	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC19A1_LS017	chr21:45538008|45544137:-	SLC19A1	solute carrier family 19 member 1	protein coding gene	no	ENST00000567670.5;ENST00000443742.1	0.193	0.122	2.088	0.268(2570)	0.39(274)	0.321(5580)	non tumor-specific	exon_skip	yes
UN_AC008012.1_LS0056	chr12:4357927|4358247:-	AC008012.1	-	protein coding gene	no	.	1.286	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
BICC1_LS008	chr10:58789456|58789682:+	BICC1	BicC family RNA binding protein 1	protein coding gene	no	ENST00000373886.7	12.982	13.640	5.950	0.524(5019)	0.782(549)	0.801(13930)	non tumor-specific	alt_3prime;exon_skip	yes
MRPL27_LS014	chr17:50370586|50372871:-	MRPL27	mitochondrial ribosomal protein L41	protein coding gene	no	ENST00000507088.5	0.019	0.104	0.721	0.881(8444)	0.915(642)	0.083(1443)	non tumor-specific	nAS	yes
ZDHHC8_LS016	chr22:20143756|20147644:+	ZDHHC8	zinc finger DHHC-type palmitoyltransferase 8	protein coding gene	no	.;.	4.274	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FBLN2_LS006	chr3:13609642|13613984:+	FBLN2	fibulin 2	protein coding gene	no	ENST00000404922.7;ENST00000295760.11;ENST00000492059.5	17.831	25.208	40.172	0.887(8502)	0.98(688)	0.939(16328)	non tumor-specific	exon_skip	yes
UN_KLF8_UP_LS0023	chrX:56129341|56204973:+	KLF8	Kruppel like factor 8	protein coding gene	yes	.	2.544	0.522	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_KDM2A_LS0011	chr11:67132073|67134534:+	KDM2A	lysine demethylase 2A	protein coding gene	yes	.	1.655	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SETX_LS025	chr9:132297054|132298080:-	SETX	senataxin	protein coding gene	no	ENST00000436441.5;ENST00000224140.5	26.674	20.891	14.257	0.929(8901)	0.979(687)	0.976(16964)	non tumor-specific	nAS	yes
UN_ZNF92_LS0005	chr7:65388254|65388806:+	ZNF92	zinc finger protein 92	protein coding gene	no	.	1.451	0.011	0.000	0.008(75)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TUBGCP2_LS0004	chr10:133280095|133281273:-	TUBGCP2	tubulin gamma complex associated protein 2	protein coding gene	no	.	17.530	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ORC5_LS019	chr7:104202544|104204142:-	ORC5	origin recognition complex subunit 5	protein coding gene	no	ENST00000422497.5;ENST00000448563.3;ENST00000626700.1	0.065	0.033	0.623	0.096(917)	0.101(71)	0.051(889)	non tumor-specific	exon_skip	yes
UN_AL671762.1_UP_LS0178	chr6:31816219|31828281:+	AL671762.1	-	lncRNA gene	no	.	64.274	6.288	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
PHYKPL_LS005	chr5:178211970|178212973:-	PHYKPL	5-phosphohydroxy-L-lysine phospho-lyase	protein coding gene	no	ENST00000308158.9;ENST00000481436.5;ENST00000481811.5;ENST00000489262.5;ENST00000474052.5;ENST00000393488.2;ENST00000476487.5;ENST00000506045.1	59.553	40.310	72.576	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
NAA35_LS023	chr9:86016675|86017498:+	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein coding gene	no	ENST00000361671.9;ENST00000361671.9	40.799	24.917	24.172	0.99(9486)	0.996(699)	0.977(16986)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
IL36A_LS002	chr2:113006087|113006598:+	IL36A	interleukin 36 alpha	protein coding gene	no	ENST00000259211.6	10.378	79.993	0.903	0.087(837)	0.07(49)	0.15(2614)	non tumor-specific	nAS	yes
ITGB1_LS025	chr10:32935558|32935895:-	ITGB1	integrin subunit beta 1	protein coding gene	yes	ENST00000472147.1	0.110	0.034	0.690	0.037(353)	0.033(23)	0.133(2306)	non tumor-specific	alt_5prime;exon_skip	yes
ZC3H7A_LS010	chr16:11765153|11765489:-	ZC3H7A	zinc finger CCCH-type containing 7A	protein coding gene	no	ENST00000396516.6;ENST00000355758.8;ENST00000571405.5;ENST00000571198.5;ENST00000571676.5	22.712	18.206	34.816	0.98(9385)	0.994(698)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_EFNA5_LS0025	chr5:107669766|107670489:-	EFNA5	ephrin A5	protein coding gene	yes	.	1.431	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
PRKAR1A_LS040	chr17:68528719|68528870:+	PRKAR1A	protein kinase cAMP-dependent type I regulatory subunit alpha	protein coding gene	yes	ENST00000586541.5	0.103	0.115	0.687	0.113(1080)	0.134(94)	0.14(2441)	non tumor-specific	exon_skip	yes
HEBP2_LS001	chr6:138403698|138405145:+	HEBP2	heme binding protein 2	protein coding gene	no	ENST00000448741.5	0.014	0.037	0.692	0.426(4084)	0.42(295)	0.085(1480)	non tumor-specific	nAS	yes
UN_VCAN_LS0016	chr5:83538200|83542029:+	VCAN	versican	protein coding gene	no	.	3.748	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
MAP1LC3B_LS005	chr16:87389872|87391598:+	MAP1LC3B	microtubule associated protein 1 light chain 3 beta	protein coding gene	no	ENST00000561823.1	0.494	0.000	0.610	0.001(13)	0(0)	0.008(142)	non tumor-specific	nAS	yes
DIS3L_LS027	chr15:66332020|66332736:+	DIS3L	DIS3 like exosome 3'-5' exoribonuclease	protein coding gene	no	ENST00000319194.9;ENST00000319212.8;ENST00000530537.1	43.502	27.264	25.560	0.988(9465)	0.996(699)	0.979(17011)	non tumor-specific	intron_retention	yes
UN_KIF12_LS0035	chr9:114099084|114099198:-	KIF12	kinesin family member 12	protein coding gene	no	.	0.846	0.158	0.000	0.009(91)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC068587.4_LS0143	chr8:12605107|12605299:-	AC068587.4	-	lncRNA gene	no	.	5.301	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF641_LS006	chr12:48344712|48347252:-	ZNF641	zinc finger protein 641	protein coding gene	no	.;.;.	2.752	1.190	0.000	0.053(512)	0.073(51)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
KLHDC2_LS020	chr14:49780775|49782542:+	KLHDC2	kelch domain containing 2	protein coding gene	no	ENST00000555739.5;ENST00000555739.5	0.852	1.936	0.690	0.096(924)	0.131(92)	0.099(1714)	non tumor-specific	alt_3prime;exon_skip	yes
SLC7A2_LS018	chr8:17563711|17564950:+	SLC7A2	solute carrier family 7 member 2	protein coding gene	no	ENST00000494857.5;ENST00000522656.5;ENST00000470360.5;ENST00000004531.14;ENST00000398090.3;ENST00000640220.1	10.670	14.958	12.597	0.716(6860)	0.959(673)	0.893(15516)	non tumor-specific	alt_3prime	yes
CSRNP3_LS008	chr2:165595213|165657761:+	CSRNP3	cysteine and serine rich nuclear protein 3	protein coding gene	no	ENST00000421875.5;ENST00000314499.11;ENST00000409664.5;ENST00000342316.8;ENST00000409420.1	1.688	1.542	1.123	0.204(1952)	0.422(296)	0.467(8110)	non tumor-specific	nAS	yes
SEC31A_LS045	chr4:82867316|82870325:-	SEC31A	SEC31 homolog A, COPII coat complex component	protein coding gene	no	ENST00000348405.8;ENST00000513858.5;ENST00000395310.6;ENST00000443462.6;ENST00000509142.5;ENST00000311785.11;ENST00000448323.5;ENST00000505472.5;ENST00000500777.6;ENST00000508502.5;ENST00000355196.6;ENST00000264405.9;ENST00000505984.5;ENST00000508479.5;ENST00000436790.6	91.057	79.699	73.448	0.982(9409)	0.994(698)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
TBC1D3D_LS004	chr17:38007766|38008210:+	TBC1D3D	TBC1 domain family member 3D	protein coding gene	no	ENST00000616101.4	1.142	0.629	0.652	0.543(5198)	0.417(293)	0.047(813)	non tumor-specific	nAS	yes
MMGT1_LS004	chrX:135971110|135973900:-	MMGT1	membrane magnesium transporter 1	protein coding gene	no	.;.	0.631	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SMG6_LS0037	chr17:2087179|2172658:-	SMG6	SMG6 nonsense mediated mRNA decay factor	protein coding gene	no	.	0.954	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PKP3_LS0159	chr11:404135|404245:+	PKP3	plakophilin 3	protein coding gene	no	.	53.059	14.915	0.000	0.005(47)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
PBX1_LS020	chr1:164657372|164792494:+	PBX1	PBX homeobox 1	protein coding gene	yes	ENST00000560641.5	0.035	0.000	0.556	0.011(101)	0.01(7)	0.01(171)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MALRD1_LS0025	chr10:19498646|19531198:+	MALRD1	MAM and LDL receptor class A domain containing 1	protein coding gene	no	.	2.744	0.311	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_MSI2_LS0041	chr17:57561676|57596868:+	MSI2	musashi RNA binding protein 2	protein coding gene	no	.	2.391	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
USP39_LS028	chr2:85645899|85647930:+	USP39	ubiquitin specific peptidase 39	protein coding gene	no	ENST00000465514.1	2.422	0.906	7.592	0.831(7962)	0.779(547)	0.973(16904)	non tumor-specific	alt_3prime;exon_skip	yes
AC074344.2_LS001	chr4:159398628|159400778:+	AC074344.2	-	lncRNA gene	no	ENST00000502846.1	0.128	0.015	0.625	0.006(55)	0.003(2)	0.005(83)	non tumor-specific	nAS	yes
ABCG1_LS007	chr21:42225914|42271070:+	ABCG1	ATP binding cassette subfamily G member 1	protein coding gene	no	ENST00000398457.6;ENST00000462050.5;ENST00000347800.6;ENST00000450121.5;ENST00000398449.7;ENST00000361802.6;ENST00000343687.7	18.883	15.057	13.389	0.945(9056)	0.97(681)	0.951(16532)	non tumor-specific	exon_skip	yes
LRRC43_LS007	chr12:122186300|122187701:+	LRRC43	leucine rich repeat containing 43	protein coding gene	no	ENST00000537729.5;ENST00000537113.5;ENST00000339777.4	3.488	2.962	1.616	0.334(3199)	0.452(317)	0.576(10010)	non tumor-specific	exon_skip	yes
C17orf102_LS001	chr17:34577620|34578871:-	C17orf102	chromosome 17 open reading frame 102	no	no	ENST00000623254.1	0.226	0.152	1.102	0.022(211)	0.016(11)	0.043(747)	non tumor-specific	nAS	yes
UN_RRBP1_LS0197	chr20:17659274|17659305:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	51.088	30.746	0.000	0.01(92)	0.016(11)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
PHACTR1_LS001	chr6:12716896|12717509:+	PHACTR1	phosphatase and actin regulator 1	protein coding gene	no	ENST00000332995.11	0.174	1.004	3.578	0.014(133)	0.01(7)	0.084(1465)	non tumor-specific	exon_skip	yes
UN_EXT2_LS0028	chr11:44236375|44244154:+	EXT2	exostoses (multiple) 3	protein coding gene	yes	.	14.585	0.922	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC01770_LS0002	chr1:1430662|1431805:-	LINC01770	long intergenic non-protein coding RNA 1770	lncRNA gene	no	.	2.447	0.321	0.000	0.005(51)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TFCP2_LS0001	chr12:51098918|51099667:-	TFCP2	transcription factor CP2	protein coding gene	yes	.	10.963	3.227	0.000	0.017(164)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
EPDR1_LS004	chr7:37921208|37950200:+	EPDR1	ependymin related 1	protein coding gene	no	ENST00000423717.1	1.716	1.081	2.677	0.617(5911)	0.748(525)	0.755(13120)	non tumor-specific	exon_skip	yes
CYB5B_LS003	chr16:69447278|69448115:+	CYB5B	cytochrome b5 type B	protein coding gene	no	ENST00000512062.5;ENST00000307892.12;ENST00000514123.5;ENST00000561792.5;ENST00000568342.2	218.283	166.232	78.929	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ZSWIM4_LS016	chr19:13819492|13823346:+	ZSWIM4	zinc finger SWIM-type containing 4	protein coding gene	no	ENST00000254323.6;ENST00000590508.5	16.822	6.831	4.759	0.951(9116)	0.947(665)	0.948(16479)	non tumor-specific	exon_skip	yes
TCF7L1_LS002	chr2:85134079|85134323:+	TCF7L1	transcription factor 7 like 1	protein coding gene	no	ENST00000282111.3	20.955	17.605	18.096	0.877(8407)	0.99(695)	0.93(16169)	non tumor-specific	nAS	yes
UN_ECM1_LS0025	chr1:150511521|150511597:-	ECM1	extracellular matrix protein 1	protein coding gene	no	.	1.485	1.445	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM114A1_LS015	chr4:38935790|38938468:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	ENST00000513966.1	0.208	0.089	0.700	0.222(2126)	0.251(176)	0.124(2157)	non tumor-specific	nAS	yes
RNF17_LS037	chr13:24870739|24874114:+	RNF17	ring finger protein 17	protein coding gene	no	ENST00000255324.9;ENST00000418120.5;ENST00000339524.3	11.687	0.244	0.921	0.024(233)	0.004(3)	0.122(2121)	non tumor-specific	exon_skip	yes
UN_AC022726.2_UP_LS0013	chr18:63031770|63033438:+	AC022726.2	-	lncRNA gene	no	.	2.620	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM89B_LS0082	chr11:65573799|65573868:-	FAM89B	family with sequence similarity 89 member B	protein coding gene	no	.	2.184	0.067	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
BPHL_LS020	chr6:3137493|3152488:+	BPHL	biphenyl hydrolase like	protein coding gene	no	.;.	0.768	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
DDX39B_LS005	chr6:31531178|31531296:-	DDX39B	DExD-box helicase 39B	protein coding gene	no	ENST00000484566.5;ENST00000478365.1	1.599	0.349	30.558	0.931(8917)	0.927(651)	0.979(17021)	non tumor-specific	alt_3prime	yes
PTPRN2_LS016	chr7:158110915|158133677:-	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	ENST00000409483.5;ENST00000389416.8;ENST00000389418.8;ENST00000404321.3	18.765	14.679	4.350	0.361(3456)	0.415(291)	0.46(7995)	non tumor-specific	exon_skip	yes
AP001001.1_LS004	chr11:106095851|106101652:-	AP001001.1	-	lncRNA gene	no	ENST00000532422.1	3.531	0.000	0.529	0(2)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_NPIPA1_LS0060	chr16:14951768|14951838:-	NPIPA1	nuclear pore complex interacting protein family member A1	protein coding gene	no	.	2.264	0.857	0.000	0.1(957)	0.048(34)	0(0)	non tumor-specific	nAS	no
DOK4_LS005	chr16:57475219|57475506:-	DOK4	docking protein 4	protein coding gene	no	ENST00000566936.5;ENST00000340099.8;ENST00000569548.5;ENST00000569010.5;ENST00000561918.1;ENST00000569250.5;ENST00000564378.5;ENST00000562737.5;ENST00000568617.5;ENST00000567276.5;ENST00000566588.5;ENST00000567214.5;ENST00000569538.5	25.553	24.668	25.292	0.981(9401)	0.996(699)	0.969(16840)	non tumor-specific	alt_3prime;exon_skip	yes
SLC28A3_LS011	chr9:84290279|84292668:-	SLC28A3	solute carrier family 28 member 3	protein coding gene	no	ENST00000376238.4;ENST00000376238.4;ENST00000376238.4	5.257	3.086	1.568	0.307(2945)	0.258(181)	0.234(4059)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_HERC4_LS0010	chr10:67936235|67940939:-	HERC4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein coding gene	no	.	3.211	0.014	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CYP4V2_LS0037	chr4:186204470|186205200:+	CYP4V2	cytochrome P450 family 4 subfamily V member 2	protein coding gene	no	.	1.733	0.264	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FLAD1_LS016	chr1:154990257|154990339:+	FLAD1	flavin adenine dinucleotide synthetase 1	protein coding gene	no	ENST00000315144.14;ENST00000368432.5;ENST00000292180.7;ENST00000477609.5	96.844	33.597	28.912	0.997(9556)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
TRIM16L_LS021	chr17:18732134|18734877:+	TRIM16L	tripartite motif containing 16 like	protein coding gene	no	ENST00000572555.5;ENST00000449552.6;ENST00000571708.5;ENST00000641936.1;ENST00000395671.9;ENST00000571542.5;ENST00000424146.2;ENST00000641182.1;ENST00000574042.2	17.363	11.810	11.633	0.976(9351)	0.991(696)	0.965(16765)	non tumor-specific	exon_skip	yes
UN_ANKRD55_LS0003	chr5:56111777|56116615:-	ANKRD55	ankyrin repeat domain 55	protein coding gene	no	.	4.053	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_FTCD_LS0048	chr21:46150525|46150941:-	FTCD	formimidoyltransferase cyclodeaminase	protein coding gene	no	.	12.419	1.357	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_MCM3AP_LS0090	chr21:46285394|46285576:-	MCM3AP	minichromosome maintenance complex component 3 associated protein	protein coding gene	no	.	2.731	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
AC112722.1_LS002	chr4:185371065|185390584:+	AC112722.1	-	lncRNA gene	no	ENST00000514884.1	0.534	0.105	0.671	0.023(221)	0.031(22)	0.035(610)	non tumor-specific	nAS	yes
LTN1_LS026	chr21:28967179|28969466:-	LTN1	listerin E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000361371.9;ENST00000389194.6;ENST00000614971.4;ENST00000389195.6	5.807	4.593	5.151	0.762(7300)	0.897(630)	0.895(15563)	non tumor-specific	alt_5prime;exon_skip	yes
TTC3-AS1_LS001	chr21:37188643|37193808:-	TTC3-AS1	TTC3 antisense RNA 1	lncRNA gene	no	ENST00000424733.1	0.034	0.011	0.714	0.042(400)	0.036(25)	0.004(64)	non tumor-specific	nAS	yes
UN_AC017104.3_UP_LS0012	chr2:231412925|231414110:+	AC017104.3	-	lncRNA gene	no	.	1.505	1.076	0.000	0.003(33)	0.019(13)	0(0)	non tumor-specific	nAS	no
COL7A1_LS114	chr3:48588788|48588870:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000328333.12	10.883	2.635	5.627	0.523(5011)	0.395(277)	0.872(15164)	non tumor-specific	exon_skip	yes
MORN3_LS002	chr12:121652808|121653075:-	MORN3	MORN repeat containing 3	protein coding gene	no	ENST00000355329.7	1.947	1.169	1.619	0.504(4826)	0.543(381)	0.597(10372)	non tumor-specific	exon_skip	yes
UN_AL592293.1_UP_LS0002	chr9:14925273|14925358:+	AL592293.1	-	pseudogene	no	.	2.561	0.196	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	nAS	no
FENDRR_LS003	chr16:86478051|86478705:-	FENDRR	FOXF1 adjacent non-coding developmental regulatory RNA	lncRNA gene	no	ENST00000595886.1	1.702	0.510	0.906	0.022(213)	0.144(101)	0.094(1638)	non tumor-specific	nAS	yes
UN_MT-TS1_UP_LS0379	chrM:7944|8927:-	MT-TS1	mitochondrially encoded tRNA-Ser (UCN) 1	small non-coding RNA gene	no	.	368.292	121.764	0.000	0.021(198)	0.017(12)	0(0)	non tumor-specific	nAS	no
PRMT5_LS021	chr14:22926296|22926506:-	PRMT5	protein arginine methyltransferase 5	protein coding gene	yes	ENST00000324366.12;ENST00000397441.6;ENST00000216350.12;ENST00000553915.5;ENST00000553897.5;ENST00000553787.5;ENST00000553641.5;ENST00000554867.5;ENST00000557415.5;ENST00000556616.5;ENST00000554910.5	24.009	14.523	33.750	0.989(9479)	0.996(699)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime	yes
ZFYVE16_LS023	chr5:80450586|80451485:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	ENST00000338008.9;ENST00000510158.5;ENST00000505560.4;ENST00000512558.5;ENST00000511829.5	18.068	13.510	16.369	0.934(8950)	0.98(688)	0.978(16994)	non tumor-specific	nAS	yes
DGCR8_LS003	chr22:20086683|20087162:+	DGCR8	DGCR8 microprocessor complex subunit	protein coding gene	no	ENST00000351989.7;ENST00000383024.6;ENST00000407755.1	11.837	8.020	14.451	0.951(9111)	0.981(689)	0.972(16903)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
EPS8_LS026	chr12:15681302|15682893:-	EPS8	epidermal growth factor receptor pathway substrate 8	protein coding gene	yes	ENST00000543468.5;ENST00000543523.5;ENST00000644374.1;ENST00000281172.9;ENST00000646918.1;ENST00000642939.1;ENST00000645775.1;ENST00000646828.1;ENST00000647224.1;ENST00000642278.1;ENST00000646123.1;ENST00000647087.1;ENST00000543612.5;ENST00000546311.5;ENST00000535752.5;ENST00000543363.5;ENST00000536793.5;ENST00000544064.1	42.489	33.717	25.240	0.906(8678)	0.981(689)	0.955(16601)	non tumor-specific	exon_skip	yes
UN_RPL13P12_LS0021	chr17:17383745|17383806:-	RPL13P12	ribosomal protein L13 pseudogene 12	pseudogene	no	.	54.833	1.208	0.000	0.01(95)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01106_LS0015	chr2:110375395|110375436:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	3.584	1.428	0.000	0.019(179)	0.017(12)	0(0)	non tumor-specific	nAS	no
USP2_LS011	chr11:119359342|119359537:-	USP2	ubiquitin specific peptidase 2	protein coding gene	no	ENST00000455332.6;ENST00000260187.6;ENST00000525735.1;ENST00000525189.5;ENST00000532613.1	4.259	13.383	11.169	0.69(6613)	0.943(662)	0.905(15739)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RERGL_LS0006	chr12:18088956|18197336:-	RERGL	RERG like	protein coding gene	no	.	4.912	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CDKN2A_LS006	chr9:21968771|21970902:-	CDKN2A	cyclin dependent kinase inhibitor 2A	protein coding gene	yes	ENST00000498124.1	1.171	0.508	0.643	0.154(1475)	0.011(8)	0.011(183)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ERCC5_LS0026	chr13:102846350|102849118:+	ERCC5	ERCC excision repair 5, endonuclease	protein coding gene	no	.	0.970	0.076	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL37A_LS0031	chr2:216501691|216502202:-	RPL37A	ribosomal protein L37a	protein coding gene	no	.	1.557	0.133	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
EDNRA_LS004	chr4:147486101|147532506:+	EDNRA	endothelin receptor type A	protein coding gene	no	ENST00000514245.1	0.574	0.274	0.656	0.091(870)	0.131(92)	0.058(1014)	non tumor-specific	exon_skip	yes
UN_U2AF2_LS0082	chr19:55674217|55674602:+	U2AF2	U2 small nuclear RNA auxiliary factor 2	protein coding gene	no	.	0.878	0.032	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RN7SL607P_UP_LS0002	chr20:20759605|20761758:-	RN7SL607P	RNA, 7SL, cytoplasmic 607, pseudogene	small non-coding RNA gene	no	.	4.016	0.940	0.000	0.013(124)	0.001(1)	0(0)	non tumor-specific	nAS	no
POU2F1_LS005	chr1:167241610|167303474:+	POU2F1	POU class 2 homeobox 1	protein coding gene	no	ENST00000559038.5	0.143	0.008	0.625	0.035(335)	0.011(8)	0.029(498)	non tumor-specific	exon_skip	yes
C11orf54_LS018	chr11:93747448|93750346:+	C11orf54	chromosome 11 open reading frame 54	protein coding gene	no	ENST00000528288.5;ENST00000617482.4;ENST00000331239.8;ENST00000533585.5;ENST00000528099.5;ENST00000354421.7;ENST00000527003.5;ENST00000531650.5;ENST00000530279.5;ENST00000527363.5;ENST00000526335.1	24.644	48.660	21.509	0.983(9420)	0.996(699)	0.977(16982)	non tumor-specific	alt_3prime;exon_skip	yes
RGS8_LS011	chr1:182672932|182684356:-	RGS8	regulator of G protein signaling 8	protein coding gene	no	ENST00000515211.1	0.202	0.071	0.875	0.009(82)	0.006(4)	0.013(224)	non tumor-specific	nAS	yes
EPN2_LS003	chr17:19222374|19281955:+	EPN2	epsin 2	protein coding gene	no	ENST00000584707.5	0.053	0.039	0.653	0.038(361)	0.046(32)	0.024(419)	non tumor-specific	nAS	yes
UN_DHX29_LS0017	chr5:55281515|55283356:-	DHX29	DExH-box helicase 29	protein coding gene	no	.	1.928	0.421	0.000	0.009(82)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_GDF10_UP_LS0017	chr10:47210992|47224736:+	GDF10	growth differentiation factor 10	protein coding gene	no	.	3.732	0.572	0.000	0.011(108)	0.063(44)	0(0)	non tumor-specific	nAS	no
TLDC1_LS015	chr16:84498111|84504429:-	TLDC1	MTOR associated protein, eak-7 homolog	protein coding gene	no	.;.	1.705	0.291	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TMEM51-AS1_LS0013	chr1:15118746|15120972:-	TMEM51-AS1	TMEM51 antisense RNA 1	lncRNA gene	no	.	0.780	0.108	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBE3A_LS049	chr15:25421961|25438489:-	UBE3A	ubiquitin protein ligase E3A	protein coding gene	no	ENST00000637886.1	1.276	0.107	0.665	0.002(16)	0.001(1)	0.172(2997)	non tumor-specific	exon_skip;mutex_exons	yes
ERAP2_LS016	chr5:96901681|96902274:+	ERAP2	endoplasmic reticulum aminopeptidase 2	protein coding gene	no	ENST00000437043.7;ENST00000510373.5;ENST00000513084.5;ENST00000379904.8;ENST00000515095.5;ENST00000515387.1	25.532	20.169	5.918	0.74(7092)	0.795(558)	0.879(15277)	non tumor-specific	alt_5prime;exon_skip	yes
ESCO1_LS006	chr18:21540700|21560859:-	ESCO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein coding gene	no	ENST00000383276.1;ENST00000622333.1	3.004	1.900	2.243	0.832(7972)	0.883(620)	0.844(14672)	non tumor-specific	exon_skip	yes
UN_FAM53A_LS0042	chr4:1668905|1683263:-	FAM53A	family with sequence similarity 53 member A	protein coding gene	no	.	2.088	0.098	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_KMT2C_LS0068	chr7:152182594|152185558:-	KMT2C	lysine methyltransferase 2C	protein coding gene	yes	.	1.338	0.390	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
AC093627.4_LS002	chr7:150132|153409:+	AC093627.4	-	lncRNA gene	no	ENST00000471299.1	1.051	0.766	1.288	0.649(6218)	0.781(548)	0.644(11198)	non tumor-specific	nAS	yes
LRTM1_LS003	chr3:54925215|54966928:-	LRTM1	leucine rich repeats and transmembrane domains 1	protein coding gene	no	ENST00000493075.1	1.033	0.976	5.209	0.009(89)	0.016(11)	0.016(279)	non tumor-specific	exon_skip	yes
SPIB_LS003	chr19:50419973|50422473:+	SPIB	Spi-B transcription factor	protein coding gene	no	ENST00000439922.6;ENST00000595883.5;ENST00000599923.5;ENST00000594188.1;ENST00000597855.5;ENST00000596074.5;ENST00000594685.1;ENST00000270632.7	10.588	7.315	1.720	0.554(5304)	0.581(408)	0.343(5958)	non tumor-specific	nAS	yes
UN_UBQLN4P2_UP_LS0001	chr2:152717485|152720533:+	UBQLN4P2	ubiquilin 4 pseudogene 2	pseudogene	no	.	1.664	0.115	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
SNX21_LS017	chr20:45840458|45840639:+	SNX21	sorting nexin family member 21	protein coding gene	no	ENST00000462307.5;ENST00000472219.5;ENST00000372541.1;ENST00000478230.5;ENST00000372547.5;ENST00000465997.1	6.350	8.650	15.214	0.888(8510)	0.942(661)	0.966(16785)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_SRC_LS0019	chr20:37359402|37365204:+	SRC	SRC proto-oncogene, non-receptor tyrosine kinase	protein coding gene	yes	.	3.575	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AL513412.1_LS001	chr9:6902752|6973827:+	AL513412.1	-	lncRNA gene	no	ENST00000445708.1	3.761	0.000	0.639	0(4)	0(0)	0.016(283)	non tumor-specific	nAS	yes
UN_AC011718.1_UP_LS0002	chr22:18176860|18360619:+	AC011718.1	-	lncRNA gene	no	.	16.619	0.252	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GON4L_LS0021	chr1:155760654|155762190:-	GON4L	gon-4 like	protein coding gene	no	.	4.849	0.242	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ANK3_LS060	chr10:60139087|60140352:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000355288.6;ENST00000486349.2	2.660	7.479	1.898	0.565(5416)	0.813(571)	0.439(7629)	non tumor-specific	nAS	yes
UN_GAD1_UP_LS0005	chr2:170804710|170811134:+	GAD1	glutamate decarboxylase 1	protein coding gene	no	.	1.544	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FKBP10_UP_LS0016	chr17:41787128|41787538:+	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	0.868	0.086	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
TGFBRAP1_LS002	chr2:105267559|105269272:-	TGFBRAP1	transforming growth factor beta receptor associated protein 1	protein coding gene	no	ENST00000595531.5;ENST00000393359.6;ENST00000258449.2	26.952	15.504	12.448	0.974(9330)	0.973(683)	0.973(16913)	non tumor-specific	alt_3prime	yes
UN_NAAA_LS0006	chr4:75914985|75917541:-	NAAA	N-acylethanolamine acid amidase	protein coding gene	yes	.	6.945	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
NCAPH2_LS002	chr22:50508445|50515720:+	NCAPH2	non-SMC condensin II complex subunit H2	protein coding gene	no	ENST00000418794.1	0.060	0.005	0.961	0.545(5218)	0.46(323)	0.52(9034)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL049733.1_UP_LS0006	chrX:130573702|130575011:+	AL049733.1	-	pseudogene	no	.	1.551	0.032	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CPT1A_LS0021	chr11:68759661|68760256:-	CPT1A	carnitine palmitoyltransferase 1A	protein coding gene	no	.	24.391	0.369	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DNAJC7_LS026	chr17:42000570|42003359:-	DNAJC7	DnaJ heat shock protein family (Hsp40) member C7	protein coding gene	no	ENST00000585866.5;ENST00000589773.5;ENST00000591787.1	0.176	0.525	4.384	0.696(6666)	0.821(576)	0.912(15859)	non tumor-specific	exon_skip	yes
UN_MUC5AC_LS0520	chr11:1200788|1200908:-	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	.	29.283	10.857	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_JPH1_LS0003	chr8:74236609|74237208:-	JPH1	junctophilin 1	protein coding gene	no	.	4.994	1.119	0.000	0.094(897)	0.04(28)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_VLDLR-AS1_UP_LS0005	chr9:2667349|2667938:-	VLDLR-AS1	VLDLR antisense RNA 1	lncRNA gene	no	.	7.615	0.000	0.000	0.02(195)	0(0)	0(0)	non tumor-specific	nAS	no
UBA3_LS003	chr3:69056063|69056183:-	UBA3	ubiquitin like modifier activating enzyme 3	protein coding gene	no	ENST00000415609.6;ENST00000361055.8;ENST00000349511.8;ENST00000461934.5;ENST00000465627.5	66.517	42.795	70.412	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SUCLA2_LS011	chr13:47954282|47954396:-	SUCLA2	succinate-CoA ligase ADP-forming subunit beta	protein coding gene	no	ENST00000643584.1;ENST00000646932.1;ENST00000378654.8;ENST00000643023.1;ENST00000646804.1;ENST00000647361.1;ENST00000642944.1;ENST00000634878.2;ENST00000434484.5	43.566	40.344	60.215	0.989(9471)	0.997(700)	0.978(17001)	non tumor-specific	nAS	yes
RHAG_LS002	chr6:49605770|49607150:-	RHAG	Rh associated glycoprotein	protein coding gene	no	ENST00000618248.3	0.420	0.000	0.702	0(1)	0(0)	0.004(72)	non tumor-specific	nAS	yes
UN_RMDN3_LS0018	chr15:40749344|40751426:-	RMDN3	regulator of microtubule dynamics 3	protein coding gene	no	.	1.025	0.043	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SASH1_LS003	chr6:148390262|148440184:+	SASH1	SAM and SH3 domain containing 1	protein coding gene	yes	ENST00000367469.5;ENST00000367467.7	9.493	13.325	7.616	0.756(7241)	0.927(651)	0.915(15902)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PROSER3_LS0035	chr19:35768296|35768404:+	PROSER3	proline and serine rich 3	protein coding gene	no	.	0.725	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BPIFB2_LS019	chr20:33021799|33023342:+	BPIFB2	BPI fold containing family B member 2	protein coding gene	no	ENST00000170150.3	13.064	52.277	1.150	0.182(1748)	0.261(183)	0.253(4396)	non tumor-specific	exon_skip	yes
UN_ZIK1_LS0004	chr19:57584990|57588581:+	ZIK1	zinc finger protein interacting with K protein 1	protein coding gene	no	.	1.215	0.128	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CD247_LS005	chr1:167435431|167438570:-	CD247	CD247 molecule	protein coding gene	no	ENST00000392122.3;ENST00000470379.1	9.997	3.600	1.878	0.798(7641)	0.895(628)	0.701(12180)	non tumor-specific	alt_3prime	yes
AL031056.1_LS003	chr6:149218776|149229932:+	AL031056.1	-	lncRNA gene	no	ENST00000635954.1;ENST00000443992.1	0.121	0.018	2.184	0.083(792)	0.037(26)	0.164(2844)	non tumor-specific	exon_skip	yes
CTNNA1_LS049	chr5:138875738|138880195:+	CTNNA1	catenin alpha 1	protein coding gene	no	ENST00000518263.5	0.171	0.000	1.199	0.013(122)	0.006(4)	0.047(821)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
IKBKG_LS030	chrX:154561763|154562810:+	IKBKG	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein coding gene	no	ENST00000619941.4;ENST00000615874.4	0.673	0.783	1.526	0.776(7439)	0.836(587)	0.785(13646)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SHROOM1_LS035	chr5:132827607|132830594:-	SHROOM1	shroom family member 1	protein coding gene	no	ENST00000378679.7;ENST00000378679.7;ENST00000378679.7	0.487	0.398	1.530	0.214(2054)	0.283(199)	0.673(11696)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_TMOD3_LS0048	chr15:51925879|51926778:-	TMOD3	tropomodulin 3	protein coding gene	no	.	5.110	0.099	0.000	0.027(260)	0.001(1)	0(0)	non tumor-specific	nAS	no
FBXL2_LS015	chr3:33297962|33317477:+	FBXL2	F-box and leucine rich repeat protein 2	protein coding gene	no	ENST00000435207.5	0.006	0.000	0.656	0.007(69)	0.011(8)	0.009(161)	non tumor-specific	exon_skip;mutex_exons	yes
IL5_LS001	chr5:132541909|132542015:-	IL5	interleukin 5	protein coding gene	no	ENST00000231454.5	0.717	0.447	0.781	0.014(132)	0.014(10)	0.047(818)	non tumor-specific	nAS	yes
UN_AHNAK_LS0962	chr11:62525245|62529782:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.600	0.486	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_DUX4L32_UP_LS0002	chr20:29101550|29104216:+	DUX4L32	double homeobox 4 like 32 (pseudogene)	pseudogene	no	.	1.281	0.231	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CYP2F1_UP_LS0007	chr19:41103381|41103432:+	CYP2F1	cytochrome P450 family 2 subfamily F member 1	protein coding gene	no	.	1.255	0.483	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANKRD26P1_LS010	chr16:46498251|46499936:-	ANKRD26P1	ankyrin repeat domain 26 pseudogene 1	pseudogene	no	ENST00000571006.5;ENST00000566201.6	6.168	0.000	0.790	0.014(136)	0(0)	0.088(1523)	non tumor-specific	nAS	yes
DOCK8_LS001	chr9:215029|220748:+	DOCK8	dedicator of cytokinesis 8	protein coding gene	no	ENST00000524396.5	0.108	0.000	0.678	0.003(32)	0(0)	0.005(79)	non tumor-specific	exon_skip	yes
UN_AC079781.5_LS0025	chr7:97927808|97928082:-	AC079781.5	-	lncRNA gene	no	.	2.469	0.602	0.000	0.016(155)	0.03(21)	0(0)	non tumor-specific	nAS	no
R3HDM4_LS011	chr19:900952|901976:-	R3HDM4	R3H domain containing 4	protein coding gene	no	ENST00000589428.5	0.911	1.009	2.107	0.873(8369)	0.795(558)	0.834(14500)	non tumor-specific	exon_skip	yes
ABCA7_LS026	chr19:1051052|1051155:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	7.771	3.177	7.769	0.776(7436)	0.796(559)	0.956(16610)	non tumor-specific	exon_skip	yes
DGKB_LS013	chr7:14613413|14621378:-	DGKB	diacylglycerol kinase beta	protein coding gene	no	ENST00000399322.7;ENST00000403951.6;ENST00000402815.5;ENST00000407950.5;ENST00000406247.7;ENST00000403963.5;ENST00000471732.5	7.198	5.648	2.087	0.083(800)	0.091(64)	0.425(7379)	non tumor-specific	nAS	yes
FCGR1CP_LS003	chr1:143876306|143880437:+	FCGR1CP	Fc fragment of IgG receptor Ic, pseudogene	pseudogene	no	ENST00000579737.3	6.104	2.903	1.560	0.691(6620)	0.58(407)	0.464(8058)	non tumor-specific	nAS	yes
UN_ASH1L_LS0044	chr1:155439068|155440503:-	ASH1L	ASH1 like histone lysine methyltransferase	protein coding gene	no	.	1.969	0.844	0.000	0.047(449)	0.031(22)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CPNE1_LS034	chr20:35632923|35658930:-	CPNE1	copine 1	protein coding gene	no	ENST00000420363.5;ENST00000434795.5;ENST00000458038.5	0.208	0.292	6.376	0.918(8792)	0.963(676)	0.958(16649)	non tumor-specific	exon_skip	yes
UN_AP005264.5_UP_LS0001	chr18:12200571|12201122:+	AP005264.5	-	pseudogene	no	.	2.838	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FLT1_LS033	chr13:28434220|28438221:-	FLT1	fms related receptor tyrosine kinase 1	protein coding gene	no	ENST00000282397.8;ENST00000541932.5;ENST00000615840.4;ENST00000639477.1;ENST00000539099.1	16.078	12.786	7.666	0.84(8047)	0.927(651)	0.933(16222)	non tumor-specific	exon_skip	yes
UN_FAAH_LS0026	chr1:46410497|46410584:+	FAAH	fatty acid amide hydrolase	protein coding gene	no	.	3.461	0.512	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_CACNB1_LS0013	chr17:39178079|39182971:-	CACNB1	calcium voltage-gated channel auxiliary subunit beta 1	protein coding gene	no	.	1.977	0.809	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC010507.1_LS0098	chr19:200146|200391:-	AC010507.1	-	pseudogene	no	.	2.159	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR7E125P_UP_LS0024	chr8:7293388|7324297:-	OR7E125P	olfactory receptor family 7 subfamily E member 125 pseudogene	pseudogene	no	.	0.957	0.136	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TENM2_LS0037	chr5:167820675|167875986:+	TENM2	teneurin transmembrane protein 2	protein coding gene	no	.	3.169	0.904	0.000	0.064(610)	0.073(51)	0(0)	non tumor-specific	exon_skip	no
DMTN_LS044	chr8:22080870|22081113:+	DMTN	dematin actin binding protein	protein coding gene	no	ENST00000432128.5;ENST00000517600.5;ENST00000517305.4;ENST00000265800.9;ENST00000358242.5;ENST00000523266.5	48.958	59.203	32.299	0.936(8969)	0.987(693)	0.958(16658)	non tumor-specific	exon_skip;mutex_exons	yes
NNT_LS011	chr5:43616065|43619032:+	NNT	nicotinamide nucleotide transhydrogenase	protein coding gene	no	ENST00000512422.5;ENST00000264663.9;ENST00000344920.8;ENST00000512996.6	31.460	28.657	16.891	0.92(8814)	0.984(691)	0.973(16913)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NFRKB_LS018	chr11:129881853|129882086:-	NFRKB	nuclear factor related to kappaB binding protein	protein coding gene	no	ENST00000446488.7;ENST00000524794.5;ENST00000524746.5;ENST00000531755.5	14.147	9.075	12.477	0.931(8921)	0.959(673)	0.972(16897)	non tumor-specific	nAS	yes
AKIRIN1_LS005	chr1:39001106|39003347:+	AKIRIN1	akirin 1	protein coding gene	no	ENST00000432648.7;ENST00000372984.8	91.435	66.589	50.298	0.994(9528)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EDN1_UP_LS0002	chr6:12008657|12015526:+	EDN1	endothelin 1	protein coding gene	no	.	0.368	0.038	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC244517.5_UP_LS0002	chr5:141096806|141124006:-	AC244517.5	-	lncRNA gene	no	.	2.293	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ABHD5_LS006	chr3:43695153|43699276:+	ABHD5	abhydrolase domain containing 5, lysophosphatidic acid acyltransferase	protein coding gene	no	ENST00000646378.1	1.635	1.817	0.000	0.001(9)	0.006(4)	0(0)	non tumor-specific	nAS	yes
UN_DENND4B_LS0030	chr1:153941394|153941869:-	DENND4B	DENN domain containing 4B	protein coding gene	no	.	2.325	0.762	0.000	0.007(67)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TCF7L2_LS020	chr10:113146097|113150998:+	TCF7L2	transcription factor 7 like 2	protein coding gene	yes	ENST00000534894.5;ENST00000536810.5;ENST00000355995.8;ENST00000538897.5;ENST00000542695.5;ENST00000627217.2;ENST00000369397.8;ENST00000355717.9;ENST00000352065.10;ENST00000369395.6;ENST00000637321.1;ENST00000369389.6;ENST00000637416.1;ENST00000636447.1;ENST00000636236.1;ENST00000636309.1;ENST00000277945.11	18.326	18.577	21.552	0.95(9098)	0.986(692)	0.972(16898)	non tumor-specific	alt_3prime	yes
STARD3NL_LS012	chr7:38179145|38207447:+	STARD3NL	STARD3 N-terminal like	protein coding gene	no	ENST00000396013.5;ENST00000396013.5	2.020	1.527	2.423	0.859(8228)	0.88(618)	0.834(14497)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
IL13_LS006	chr5:132659471|132659724:+	IL13	interleukin 13	protein coding gene	no	ENST00000468334.5;ENST00000459878.5;ENST00000487267.5;ENST00000617259.2;ENST00000462480.1;ENST00000304506.7	0.214	0.567	0.798	0.055(525)	0.11(77)	0.215(3740)	non tumor-specific	nAS	yes
TRPM7_LS042	chr15:50657819|50662967:-	TRPM7	transient receptor potential cation channel subfamily M member 7	protein coding gene	no	ENST00000646667.1;ENST00000313478.11;ENST00000560955.5	10.559	7.692	6.375	0.77(7374)	0.92(646)	0.915(15904)	non tumor-specific	exon_skip	yes
UN_SCD_LS0096	chr10:100363906|100363978:-	SCD	solute carrier family 22 member 5	protein coding gene	no	.	19.628	2.096	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	nAS	no
F10_LS008	chr13:113144095|113147379:+	F10	coagulation factor X	protein coding gene	no	ENST00000409306.5;ENST00000375551.7;ENST00000375559.7;ENST00000410083.6;ENST00000498455.1	21.524	25.939	16.834	0.727(6964)	0.983(690)	0.914(15889)	non tumor-specific	exon_skip	yes
NTRK3_LS029	chr15:88132055|88135101:-	NTRK3	neurotrophic receptor tyrosine kinase 3	protein coding gene	yes	ENST00000559764.2	0.064	0.009	0.669	0.013(124)	0.01(7)	0.047(812)	non tumor-specific	nAS	yes
NETO1_LS006	chr18:72748164|72749014:-	NETO1	neuropilin and tolloid like 1	protein coding gene	no	ENST00000327305.10;ENST00000327305.10;ENST00000327305.10	3.307	0.289	1.455	0.15(1439)	0.016(11)	0.286(4977)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PRSS3P3_UP_LS0010	chr7:142331355|142335235:-	PRSS3P3	PRSS3 pseudogene 3	pseudogene	no	.	1.505	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC39A4_LS0052	chr8:144415419|144415777:-	SLC39A4	solute carrier family 39 member 4	protein coding gene	yes	.	47.056	2.868	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
GAS8_LS034	chr16:90042535|90043196:+	GAS8	growth arrest specific 8	protein coding gene	no	ENST00000536122.7;ENST00000268699.8;ENST00000620723.4;ENST00000566266.5;ENST00000569558.5;ENST00000564789.5;ENST00000568284.1	35.439	18.631	22.538	0.95(9101)	0.946(664)	0.973(16904)	non tumor-specific	alt_5prime;intron_retention	yes
UN_MUC1_LS0460	chr1:155190454|155190516:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	4.087	1.164	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
AMBRA1_LS032	chr11:46548500|46593828:-	AMBRA1	autophagy and beclin 1 regulator 1	protein coding gene	no	ENST00000533727.5;ENST00000534300.5;ENST00000531542.1;ENST00000533727.5;ENST00000534300.5;ENST00000531542.1	6.123	4.869	7.359	0.886(8488)	0.943(662)	0.96(16685)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PLEKHG5_LS0049	chr1:6485167|6487548:+	PLEKHG5	pleckstrin homology and RhoGEF domain containing G5	protein coding gene	no	.	4.503	0.239	0.000	0.011(107)	0.003(2)	0(0)	non tumor-specific	nAS	no
CASC15_LS024	chr6:22194116|22205185:+	CASC15	cancer susceptibility 15	lncRNA gene	no	ENST00000444265.6	2.294	0.000	0.725	0.001(12)	0(0)	0.006(112)	non tumor-specific	nAS	yes
TRIM27_LS022	chr6:28921987|28923213:-	TRIM27	tripartite motif containing 27	protein coding gene	no	ENST00000481474.5;ENST00000377194.7;ENST00000377199.3	13.101	7.922	30.711	0.953(9128)	0.964(677)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_RBCK1_LS0062	chr20:419731|420907:+	RBCK1	RANBP2-type and C3HC4-type zinc finger containing 1	protein coding gene	no	.	8.543	1.413	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
ZSWIM8_LS036	chr10:73799185|73800120:+	ZSWIM8	zinc finger SWIM-type containing 8	protein coding gene	no	.;.;.	5.873	0.881	0.000	0.022(215)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
NEU3_LS009	chr11:74994720|75005413:+	NEU3	neuraminidase 3	protein coding gene	no	ENST00000294064.8;ENST00000531509.5;ENST00000294064.8;ENST00000531509.5	4.270	2.252	2.056	0.81(7756)	0.88(618)	0.815(14173)	non tumor-specific	alt_5prime;exon_skip	yes
C15orf40_LS022	chr15:83010363|83011486:-	C15orf40	chromosome 15 open reading frame 40	protein coding gene	no	ENST00000512638.5;ENST00000563387.5;ENST00000506912.6	0.797	0.611	1.256	0.876(8397)	0.916(643)	0.699(12155)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_USF2_LS0084	chr19:35279527|35279647:-	USF2	upstream transcription factor 2, c-fos interacting	protein coding gene	no	.	12.831	1.903	0.000	0.031(299)	0.021(15)	0(0)	non tumor-specific	nAS	no
TNIK_LS018	chr3:171101633|171108065:-	TNIK	TRAF2 and NCK interacting kinase	protein coding gene	no	ENST00000284483.12;ENST00000475336.5;ENST00000460047.5;ENST00000470834.5;ENST00000284483.12;ENST00000475336.5;ENST00000460047.5;ENST00000470834.5	6.894	3.912	4.012	0.655(6271)	0.809(568)	0.903(15694)	non tumor-specific	alt_5prime;exon_skip	yes
NOD2_LS005	chr16:50698039|50699488:+	NOD2	nucleotide binding oligomerization domain containing 2	protein coding gene	no	ENST00000527070.5	0.032	0.012	0.646	0.013(124)	0.011(8)	0.005(79)	non tumor-specific	nAS	yes
UN_DCAKD_LS0042	chr17:45030442|45033935:-	DCAKD	dephospho-CoA kinase domain containing	protein coding gene	no	.	2.718	0.059	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CACNA1F_LS039	chrX:49226502|49226610:-	CACNA1F	calcium voltage-gated channel subunit alpha1 F	protein coding gene	no	ENST00000376251.5;ENST00000323022.9;ENST00000376265.2	3.556	0.364	1.104	0.04(388)	0.007(5)	0.483(8401)	non tumor-specific	nAS	yes
PNO1_LS001	chr2:68158141|68158380:+	PNO1	partner of NOB1 homolog	protein coding gene	no	ENST00000263657.6;ENST00000430742.1	54.295	25.582	25.066	0.971(9303)	0.972(682)	0.979(17011)	non tumor-specific	alt_5prime	yes
UN_TMEM185B_UP_LS0037	chr2:120454269|120460254:-	TMEM185B	transmembrane protein 185B	protein coding gene	no	.	1.555	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PFN4_LS0009	chr2:24122833|24123403:-	PFN4	profilin family member 4	protein coding gene	no	.	0.689	0.031	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_GTF2IP7_LS0008	chr7:76099956|76100909:-	GTF2IP7	general transcription factor IIi pseudogene 7	pseudogene	no	.	4.309	0.894	0.000	0.049(469)	0.091(64)	0(0)	non tumor-specific	nAS	no
SEC16A_LS023	chr9:136447909|136448084:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000313084.9;ENST00000431893.3	65.251	40.951	49.670	0.99(9481)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AC008686.1_LS003	chr19:13772633|13773817:-	AC008686.1	-	lncRNA gene	no	ENST00000591826.1	0.257	0.126	0.688	0.824(7894)	0.838(588)	0.13(2261)	non tumor-specific	nAS	yes
WDR1_LS006	chr4:10077448|10077753:-	WDR1	WD repeat domain 1	protein coding gene	no	ENST00000499869.6;ENST00000382451.6;ENST00000382452.6;ENST00000515743.5;ENST00000502702.5;ENST00000502962.5	589.987	382.438	328.974	0.998(9564)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
KHDC1_LS004	chr6:73242530|73262774:-	KHDC1	KH domain containing 1	protein coding gene	no	ENST00000257765.9;ENST00000610435.4	1.870	0.939	1.851	0.605(5796)	0.665(467)	0.673(11703)	non tumor-specific	alt_5prime	yes
UN_SLC25A40_LS0024	chr7:87860640|87875408:-	SLC25A40	solute carrier family 25 member 40	protein coding gene	no	.	1.072	0.302	0.000	0.024(228)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
PRR14_LS024	chr16:30655593|30655868:+	PRR14	proline rich 14	protein coding gene	no	ENST00000564946.5;ENST00000300835.8;ENST00000287463.8;ENST00000542965.2;ENST00000571654.1;ENST00000567989.1	91.053	41.895	113.401	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_MAP3K3_LS0003	chr17:63632804|63634709:+	MAP3K3	mitogen-activated protein kinase kinase kinase 3	protein coding gene	no	.	1.801	1.319	0.000	0.005(45)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FBRSL1_LS0095	chr12:132571231|132571323:+	FBRSL1	fibrosin like 1	protein coding gene	no	.	5.588	0.740	0.000	0.028(271)	0.027(19)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_MIR583HG_LS0009	chr5:96170257|96171798:-	MIR583HG	MIR583 host gene	lncRNA gene	no	.	7.506	8.134	0.000	0.078(746)	0.06(42)	0(0)	non tumor-specific	nAS	no
YWHAZ_LS001	chr8:100919229|100920590:-	YWHAZ	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein coding gene	yes	ENST00000523848.5	3.302	1.695	9.018	0.872(8355)	0.89(625)	0.965(16778)	non tumor-specific	intron_retention	yes
UN_PPAT_UP_LS0011	chr4:56525934|56528376:-	PPAT	phosphoribosyl pyrophosphate amidotransferase	protein coding gene	no	.	2.876	1.776	0.000	0.001(12)	0.007(5)	0(0)	non tumor-specific	nAS	no
CCDC84_LS016	chr11:119012003|119012149:+	CCDC84	coiled-coil domain containing 84	protein coding gene	no	ENST00000334418.5;ENST00000524670.5;ENST00000526463.5;ENST00000532132.5;ENST00000580556.5;ENST00000528088.1	20.162	9.251	45.268	0.991(9497)	0.994(698)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZFP82_LS0009	chr19:36400403|36405580:-	ZFP82	ZFP82 zinc finger protein	protein coding gene	yes	.	0.595	0.344	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_PARD3_LS0089	chr10:34737470|34747224:+	PARD3	par-3 family cell polarity regulator	protein coding gene	no	.	2.711	0.527	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AK2_LS0003	chr1:33008687|33008777:-	AK2	adenylate kinase 2	protein coding gene	no	.	4.114	0.324	0.000	0.017(160)	0.006(4)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FBN3_LS003	chr19:8073297|8075071:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	13.431	1.930	1.760	0.216(2066)	0.279(196)	0.297(5158)	non tumor-specific	alt_5prime;exon_skip	yes
ZBTB38_LS025	chr3:141404031|141438268:+	ZBTB38	zinc finger and BTB domain containing 38	protein coding gene	no	ENST00000513258.5;ENST00000514251.5;ENST00000513258.5;ENST00000514251.5	0.417	0.515	1.524	0.677(6484)	0.85(597)	0.65(11292)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SH2D3A_LS0006	chr19:6752753|6753408:-	SH2D3A	SH2 domain containing 3A	protein coding gene	no	.	3.601	1.623	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ENPEP_LS022	chr4:110553455|110559647:+	ENPEP	glutamyl aminopeptidase	protein coding gene	no	ENST00000265162.9	42.784	67.093	8.246	0.735(7044)	0.835(586)	0.894(15543)	non tumor-specific	exon_skip	yes
CHL1_LS004	chr3:198092|213204:+	CHL1	DEAD/H-box helicase 11	protein coding gene	yes	ENST00000486881.1	0.238	0.098	0.857	0.125(1198)	0.152(107)	0.161(2803)	non tumor-specific	exon_skip	yes
ABR_LS058	chr17:1154238|1154383:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	ENST00000574048.2	0.801	0.100	0.739	0.014(134)	0.006(4)	0.188(3263)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SRGAP1_LS0007	chr12:63844883|63937845:+	SRGAP1	SLIT-ROBO Rho GTPase activating protein 1	protein coding gene	no	.	4.927	0.243	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
GPAM_LS007	chr10:112158393|112159911:-	GPAM	glycerol-3-phosphate acyltransferase, mitochondrial	protein coding gene	no	ENST00000348367.8;ENST00000369425.5	7.197	10.923	4.277	0.833(7982)	0.94(660)	0.896(15580)	non tumor-specific	nAS	yes
ASB18_LS002	chr2:236196385|236214362:-	ASB18	ankyrin repeat and SOCS box containing 18	protein coding gene	no	ENST00000645891.1;ENST00000409749.7;ENST00000447030.1	0.120	0.060	1.174	0.019(186)	0.033(23)	0.078(1361)	non tumor-specific	nAS	yes
TFB2M_LS005	chr1:246556721|246557381:-	TFB2M	transcription factor B2, mitochondrial	protein coding gene	no	ENST00000366514.4	40.584	23.590	12.638	0.986(9443)	0.996(699)	0.969(16843)	non tumor-specific	exon_skip	yes
HSD3B2_LS006	chr1:119415561|119419418:+	HSD3B2	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein coding gene	no	ENST00000543831.5;ENST00000433745.5;ENST00000369416.3;ENST00000471656.5;ENST00000543831.5;ENST00000433745.5;ENST00000369416.3;ENST00000471656.5	7.946	429.354	1.005	0.056(535)	0.1(70)	0.297(5159)	non tumor-specific	alt_3prime;exon_skip	yes
CU633904.1_LS001	chr21:7430838|7443125:+	CU633904.1	-	lncRNA gene	no	ENST00000625096.3	0.072	0.091	0.488	0.524(5016)	0.611(429)	0(7)	non tumor-specific	nAS	yes
MOBP_LS004	chr3:39467740|39502066:+	MOBP	myelin associated oligodendrocyte basic protein	protein coding gene	no	ENST00000447324.5	0.091	0.004	3.336	0.046(442)	0.004(3)	0.118(2046)	non tumor-specific	exon_skip	yes
UN_UBAP1_LS0016	chr9:34199948|34220908:+	UBAP1	ubiquitin associated protein 1	protein coding gene	no	.	2.669	0.668	0.000	0.009(85)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
HUWE1_LS042	chrX:53569827|53573750:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10	53.162	34.172	29.237	0.85(8148)	0.956(671)	0.976(16971)	non tumor-specific	alt_5prime	yes
UN_AVPI1_UP_LS0002	chr10:97717786|97718857:-	AVPI1	arginine vasopressin induced 1	protein coding gene	no	.	1.637	0.425	0.000	0.016(155)	0.013(9)	0(0)	non tumor-specific	nAS	no
NF1_LS056	chr17:31299606|31325820:+	NF1	neurofibromin 1	protein coding gene	yes	ENST00000579081.5	0.007	0.138	0.658	0.104(992)	0.121(85)	0.004(61)	non tumor-specific	exon_skip;mutex_exons	yes
DUOXA1_LS011	chr15:45120805|45121087:-	DUOXA1	dual oxidase maturation factor 1	protein coding gene	no	ENST00000267803.8;ENST00000559014.5;ENST00000559013.5;ENST00000560572.5;ENST00000559988.5	7.021	8.760	2.829	0.465(4459)	0.591(415)	0.559(9708)	non tumor-specific	exon_skip	yes
UN_LINC01106_LS0008	chr2:110375315|110375596:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	4.978	1.454	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL669831.1_LS0016	chr1:726660|727885:-	AL669831.1	-	pseudogene	no	.	2.421	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHCHD3_LS0002	chr7:132785158|132785201:-	CHCHD3	coiled-coil-helix-coiled-coil-helix domain containing 3	protein coding gene	no	.	17.318	0.721	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
CLASP2_LS033	chr3:33581928|33584750:-	CLASP2	cytoplasmic linker associated protein 2	protein coding gene	no	ENST00000468888.6;ENST00000399362.8;ENST00000359576.9;ENST00000480013.5;ENST00000461133.7;ENST00000635664.1;ENST00000475576.1	23.418	19.615	19.930	0.855(8189)	0.93(653)	0.974(16928)	non tumor-specific	alt_5prime;exon_skip	yes
BTBD8_LS010	chr1:92147786|92150607:+	BTBD8	BTB domain containing 8	protein coding gene	no	ENST00000642070.1	1.681	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_LGALS8_LS0022	chr1:236542054|236550140:-	LGALS8	galectin 8	protein coding gene	no	.	0.405	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COL1A1_LS0612	chr17:50188967|50189397:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	21.719	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DHPS_LS027	chr19:12679922|12680150:-	DHPS	deoxyhypusine synthase	protein coding gene	no	ENST00000593423.5;ENST00000595100.1	0.222	0.221	5.204	0.928(8891)	0.922(647)	0.949(16492)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SLC9A3_LS0169	chr5:479997|480068:+	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	.	5.032	0.829	0.000	0.015(141)	0.006(4)	0(0)	non tumor-specific	nAS	no
DNMT1_LS001	chr19:10133701|10134217:-	DNMT1	DNA methyltransferase 1	protein coding gene	yes	ENST00000586588.5;ENST00000592705.5;ENST00000340748.8;ENST00000591798.5;ENST00000588913.5;ENST00000359526.8	108.180	23.784	42.552	0.982(9405)	0.98(688)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_CYP2D7_UP_LS0005	chr22:42145538|42149928:-	CYP2D7	cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	pseudogene	no	.	1.173	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
KCNS1_LS002	chr20:45098695|45099161:-	KCNS1	potassium voltage-gated channel modifier subfamily S member 1	protein coding gene	no	ENST00000306117.5;ENST00000537075.2	1.117	0.869	1.168	0.119(1138)	0.161(113)	0.094(1629)	non tumor-specific	exon_skip;intron_retention	yes
UN_LINC01004_LS0028	chr7:105000255|105000838:+	LINC01004	long intergenic non-protein coding RNA 1004	lncRNA gene	no	.	3.005	0.249	0.000	0.013(127)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CIART_LS0016	chr1:150286619|150286731:+	CIART	circadian associated repressor of transcription	protein coding gene	no	.	4.527	0.617	0.000	0.028(268)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ZSCAN25_LS016	chr7:99619997|99621373:+	ZSCAN25	zinc finger and SCAN domain containing 25	protein coding gene	no	ENST00000394150.5	1.001	0.709	1.216	0.665(6372)	0.692(486)	0.658(11439)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL691432.2_UP_LS0266	chr1:1641707|1708813:-	AL691432.2	-	lncRNA gene	no	.	1.764	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC025283.3_LS0052	chr16:3469283|3469379:-	AC025283.3	-	protein coding gene	no	.	1.509	1.259	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	nAS	no
LGALS1_LS013	chr22:37677065|37678506:+	LGALS1	galectin 1	protein coding gene	no	.;.	716.236	338.436	0.000	0.02(196)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01094_LS005	chr4:78649709|78673343:+	LINC01094	long intergenic non-protein coding RNA 1094	lncRNA gene	no	ENST00000507802.5	0.111	0.100	0.945	0.251(2407)	0.147(103)	0.165(2862)	non tumor-specific	nAS	yes
MID1_LS011	chrX:10506485|10523092:-	MID1	midline 1	protein coding gene	no	ENST00000610939.1	0.028	0.000	0.647	0.006(56)	0.01(7)	0.003(45)	non tumor-specific	nAS	yes
UN_BDH1_LS0087	chr3:197546486|197549505:-	BDH1	3-hydroxybutyrate dehydrogenase 1	protein coding gene	no	.	1.633	0.181	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
NCSTN_LS001	chr1:160343481|160343704:+	NCSTN	nicastrin	protein coding gene	no	ENST00000438008.5;ENST00000467837.5	0.285	0.149	0.799	0.466(4463)	0.494(347)	0.378(6565)	non tumor-specific	exon_skip;mutex_exons	yes
LINC01517_LS006	chr10:28801964|28806047:+	LINC01517	long intergenic non-protein coding RNA 1517	lncRNA gene	no	ENST00000426922.6	21.189	0.000	0.735	0(2)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_DHX16_LS0021	chr6:30671274|30672633:-	DHX16	DEAH-box helicase 16	protein coding gene	no	.	4.119	1.797	0.000	0.026(245)	0.024(17)	0(0)	non tumor-specific	alt_5prime	no
UN_CASK_LS0020	chrX:41621671|41647532:+	CASK	calcium/calmodulin dependent serine protein kinase	protein coding gene	no	.	3.768	1.153	0.000	0.008(80)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ABCA9_LS0010	chr17:68996014|69005051:-	ABCA9	ATP binding cassette subfamily A member 9	protein coding gene	no	.	0.719	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR53_LS017	chr3:196566995|196568079:-	WDR53	WD repeat domain 53	protein coding gene	no	.;.	1.558	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SLC27A4_LS004	chr9:128345549|128348545:+	SLC27A4	solute carrier family 27 member 4	protein coding gene	no	ENST00000300456.4	43.363	32.587	19.855	0.983(9420)	0.997(700)	0.978(16997)	non tumor-specific	exon_skip	yes
ZNF415_LS001	chr19:53109908|53115210:-	ZNF415	zinc finger protein 415	protein coding gene	no	ENST00000597503.5;ENST00000595193.5;ENST00000594011.5;ENST00000597748.5;ENST00000595813.5;ENST00000599261.5	0.475	0.728	4.123	0.581(5570)	0.798(560)	0.888(15440)	non tumor-specific	exon_skip;mutex_exons	yes
LAIR1_LS022	chr19:54361209|54370262:-	LAIR1	leukocyte associated immunoglobulin like receptor 1	protein coding gene	no	ENST00000391743.7;ENST00000391743.7	0.429	0.050	0.731	0.609(5837)	0.627(440)	0.066(1142)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATP11A_LS048	chr13:112878303|112881816:+	ATP11A	ATPase phospholipid transporting 11A	protein coding gene	no	.;.	4.143	1.811	0.000	0.335(3213)	0.386(271)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TIMELESS_LS010	chr12:56422191|56422847:-	TIMELESS	timeless circadian regulator	protein coding gene	no	ENST00000553532.5;ENST00000229201.4;ENST00000557589.1	39.371	9.490	7.416	0.95(9102)	0.959(673)	0.966(16783)	non tumor-specific	exon_skip	yes
ARHGAP5_LS015	chr14:32094383|32117143:+	ARHGAP5	Rho GTPase activating protein 5	protein coding gene	no	ENST00000432921.5	14.732	0.000	0.666	0(1)	0(0)	0.095(1646)	non tumor-specific	nAS	yes
UN_ACTN4_LS0285	chr19:38729547|38730374:+	ACTN4	actinin alpha 4	protein coding gene	yes	.	3.199	1.017	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
SOHLH2_LS011	chr13:36202093|36214479:-	SOHLH2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein coding gene	no	ENST00000379881.7;ENST00000317764.6	3.072	0.009	0.685	0.039(371)	0.007(5)	0.003(59)	non tumor-specific	nAS	yes
UN_BCAM_LS0070	chr19:44813607|44821275:-	BCAM	branched chain amino acid transaminase 2	protein coding gene	no	.	2.116	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
RFPL2_LS004	chr22:32194398|32196091:-	RFPL2	ret finger protein like 2	protein coding gene	no	.;.	3.036	0.711	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ABCC12_LS0006	chr16:48128737|48130772:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	.	10.857	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC104306.1_UP_LS0004	chr3:32370026|32441840:+	AC104306.1	-	pseudogene	no	.	3.517	1.667	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARPP21_LS042	chr3:35717361|35721605:+	ARPP21	cAMP regulated phosphoprotein 21	protein coding gene	no	ENST00000425289.5	0.073	0.145	0.939	0.033(318)	0.01(7)	0.061(1056)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NAT14_LS0010	chr19:55485780|55487054:+	NAT14	N-acetyltransferase 14 (putative)	protein coding gene	no	.	7.903	3.082	0.000	0.311(2977)	0.154(108)	0(0)	non tumor-specific	exon_skip;intron_retention	no
FAM210A_LS008	chr18:13682105|13697547:-	FAM210A	family with sequence similarity 210 member A	protein coding gene	no	ENST00000322247.7	0.047	0.111	0.645	0.044(420)	0.027(19)	0.04(691)	non tumor-specific	exon_skip;mutex_exons	yes
PEX14_LS002	chr1:10475002|10495274:+	PEX14	peroxisomal biogenesis factor 14	protein coding gene	no	ENST00000356607.8;ENST00000491661.2	6.903	5.028	20.367	0.988(9467)	0.987(693)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CYB561D1_LS0001	chr1:109494154|109494520:+	CYB561D1	cytochrome b561 family member D1	protein coding gene	no	.	0.631	0.118	0.000	0.011(105)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SNAP91_UP_LS0003	chr6:83799327|83898548:-	SNAP91	synaptosome associated protein 91	protein coding gene	no	.	1.383	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TRIM31-AS1_LS003	chr6:30111839|30114571:+	TRIM31-AS1	TRIM31 antisense RNA 1	lncRNA gene	no	ENST00000440874.1	1.602	0.158	0.773	0.028(267)	0.009(6)	0.06(1045)	non tumor-specific	nAS	yes
UN_ZNF703_LS0035	chr8:37697895|37697949:-	ZNF703	zinc finger protein 703	protein coding gene	yes	.	4.871	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC38_LS001	chr12:95867189|95869480:-	CCDC38	coiled-coil domain containing 38	protein coding gene	no	ENST00000546816.5;ENST00000549876.5;ENST00000344280.7	0.230	0.052	0.810	0.075(716)	0.047(33)	0.104(1802)	non tumor-specific	intron_retention	yes
UN_SH3D19_LS0021	chr4:151126258|151127618:-	SH3D19	SH3 domain containing 19	protein coding gene	no	.	1.852	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DIRC3-AS1_UP_LS0008	chr2:217263071|217263358:+	DIRC3-AS1	DIRC3 antisense RNA 1	lncRNA gene	no	.	2.432	0.527	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
CHMP2B_LS008	chr3:87245818|87249875:+	CHMP2B	charged multivesicular body protein 2B	protein coding gene	no	ENST00000494980.5	0.885	1.164	0.654	0.237(2273)	0.343(241)	0.143(2494)	non tumor-specific	alt_5prime	yes
UN_KIFC3_LS0064	chr16:57786000|57788575:-	KIFC3	kinesin family member C3	protein coding gene	no	.	1.317	0.537	0.000	0.018(175)	0.027(19)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
IST1_LS019	chr16:71903258|71915626:+	IST1	IST1 factor associated with ESCRT-III	protein coding gene	yes	ENST00000541918.5	0.039	0.032	0.709	0.324(3108)	0.385(270)	0.252(4386)	non tumor-specific	exon_skip	yes
UN_AP003390.1_LS0016	chr11:119731375|119733657:+	AP003390.1	-	lncRNA gene	no	.	2.054	0.187	0.000	0.01(94)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA6_LS0041	chr1:204249261|204250546:-	PLEKHA6	pleckstrin homology domain containing A6	protein coding gene	no	.	3.393	0.883	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_WASH8P_LS0088	chr12:22032|26801:-	WASH8P	WAS protein family homolog 8, pseudogene	pseudogene	no	.	2.538	1.289	0.000	0.382(3662)	0.275(193)	0(0)	non tumor-specific	nAS	no
UN_MPV17_LS0006	chr2:27312246|27312548:-	MPV17	mitochondrial inner membrane protein MPV17	protein coding gene	no	.	17.427	0.193	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
GOLGA4_LS042	chr3:37347296|37355101:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000361924.6;ENST00000356847.8;ENST00000437131.1	104.440	77.343	100.351	0.993(9516)	0.994(698)	0.979(17019)	non tumor-specific	exon_skip;intron_retention	yes
ACTR8_LS002	chr3:53870145|53871232:-	ACTR8	actin related protein 8	protein coding gene	no	ENST00000335754.7;ENST00000482349.5;ENST00000486794.1	49.629	28.236	26.894	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
ARMH3_LS021	chr10:102023563|102023675:-	ARMH3	armadillo like helical domain containing 3	protein coding gene	no	ENST00000370033.8	19.706	15.414	15.670	0.918(8794)	0.984(691)	0.976(16960)	non tumor-specific	exon_skip	yes
UN_MUM1_LS0027	chr19:1373160|1376145:+	MUM1	PWWP domain containing 3A, DNA repair factor	protein coding gene	yes	.	6.470	3.337	0.000	0.119(1142)	0.124(87)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
IL3_LS003	chr5:132062401|132062526:+	IL3	interleukin 3	protein coding gene	no	ENST00000296870.2	1.293	0.000	0.706	0(1)	0(0)	0.002(32)	non tumor-specific	nAS	yes
UN_AC012184.2_LS0018	chr16:70319709|70324585:+	AC012184.2	-	protein coding gene	no	.	1.623	0.163	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
PALM_LS006	chr19:727694|731095:+	PALM	paralemmin	protein coding gene	no	ENST00000264560.11;ENST00000592870.5;ENST00000338448.9;ENST00000589012.5	36.546	47.624	58.565	0.897(8596)	0.987(693)	0.95(16510)	non tumor-specific	exon_skip	yes
ASCC3_LS034	chr6:100767345|100798713:-	ASCC3	activating signal cointegrator 1 complex subunit 3	protein coding gene	no	ENST00000369162.6;ENST00000324696.8;ENST00000522650.5	11.225	6.107	4.446	0.811(7770)	0.907(637)	0.897(15599)	non tumor-specific	alt_3prime;exon_skip	yes
KRT16_LS009	chr17:41611501|41611639:-	KRT16	keratin 16	protein coding gene	no	ENST00000301653.8;ENST00000593067.1;ENST00000301653.8;ENST00000593067.1	424.493	114.277	2.691	0.524(5018)	0.426(299)	0.656(11401)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MYO6_LS029	chr6:75890265|75891228:+	MYO6	myosin VI	protein coding gene	no	ENST00000369981.7;ENST00000369985.8;ENST00000369977.7;ENST00000615563.4;ENST00000369975.5;ENST00000627432.2;ENST00000430435.1	66.399	53.621	25.546	0.965(9249)	0.996(699)	0.957(16628)	non tumor-specific	alt_5prime	yes
LINC00900_LS002	chr11:115758252|115758807:-	LINC00900	long intergenic non-protein coding RNA 900	lncRNA gene	no	ENST00000501294.1	0.303	0.157	0.767	0.052(502)	0.034(24)	0.116(2018)	non tumor-specific	nAS	yes
UTS2B_LS004	chr3:191275345|191276807:-	UTS2B	urotensin 2B	protein coding gene	no	ENST00000340524.9;ENST00000446788.5;ENST00000427544.6	0.706	0.286	0.746	0.052(498)	0.085(60)	0.218(3786)	non tumor-specific	exon_skip	yes
UN_CDHR5_UP_LS0001	chr11:626530|644437:-	CDHR5	cadherin related family member 5	protein coding gene	no	.	2.437	0.087	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RASGEF1A_LS0017	chr10:43201945|43202811:-	RASGEF1A	RasGEF domain family member 1A	protein coding gene	no	.	1.435	0.086	0.000	0.006(56)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AC136475.3_LS0004	chr11:287371|287494:+	AC136475.3	-	lncRNA gene	no	.	2.228	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MRTFB_LS016	chr16:14212409|14213545:+	MRTFB	myocardin related transcription factor B	protein coding gene	no	ENST00000571589.5;ENST00000574045.5;ENST00000318282.9;ENST00000575768.1;ENST00000572567.5;ENST00000573051.1	8.747	10.297	7.457	0.745(7136)	0.886(622)	0.919(15981)	non tumor-specific	nAS	yes
UN_HAUS5_LS0003	chr19:35614134|35615042:+	HAUS5	HAUS augmin like complex subunit 5	protein coding gene	no	.	1.572	0.088	0.000	0.023(219)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PRMT5_LS001	chr14:22920731|22920840:-	PRMT5	protein arginine methyltransferase 5	protein coding gene	yes	ENST00000476175.6	1.154	0.187	3.563	0.865(8290)	0.839(589)	0.944(16404)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
AC007370.1_LS001	chr4:12947666|12948448:-	AC007370.1	-	lncRNA gene	no	ENST00000503163.1	1.430	0.000	0.741	0.002(23)	0(0)	0.001(18)	non tumor-specific	nAS	yes
PTPN6_LS026	chr12:6955485|6955660:+	PTPN6	protein tyrosine phosphatase non-receptor type 6	protein coding gene	yes	ENST00000399448.5;ENST00000318974.13;ENST00000456013.5;ENST00000416215.6	49.496	26.886	24.392	0.99(9489)	0.994(698)	0.957(16626)	non tumor-specific	alt_3prime	yes
PKP4_LS051	chr2:158678654|158680429:+	PKP4	plakophilin 4	protein coding gene	no	ENST00000426248.7;ENST00000628904.2;ENST00000389757.7;ENST00000389759.7;ENST00000480171.7;ENST00000426248.7;ENST00000628904.2;ENST00000389757.7;ENST00000389759.7;ENST00000480171.7	117.184	87.554	73.952	0.987(9460)	0.976(685)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LEPROTL1_LS0008	chr8:30096230|30101898:+	LEPROTL1	leptin receptor overlapping transcript like 1	protein coding gene	no	.	0.704	0.212	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MT1A_UP_LS0007	chr16:56626484|56636440:+	MT1A	metallothionein 1A	protein coding gene	no	.	34.099	15.559	0.000	0.016(149)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_ARNT_LS0019	chr1:150823345|150829093:-	ARNT	aryl hydrocarbon receptor nuclear translocator	protein coding gene	no	.	4.901	0.249	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC01473_UP_LS0016	chr2:186153973|186154122:-	LINC01473	long intergenic non-protein coding RNA 1473	lncRNA gene	no	.	1.035	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BCAS3_LS035	chr17:61003889|61015751:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	ENST00000587037.5	1.291	0.533	0.894	0.039(373)	0.031(22)	0.471(8185)	non tumor-specific	exon_skip	yes
FAM155B_LS002	chrX:69529164|69529571:+	FAM155B	family with sequence similarity 155 member B	protein coding gene	no	ENST00000252338.4	5.822	2.978	2.294	0.589(5645)	0.554(389)	0.454(7895)	non tumor-specific	nAS	yes
UN_NREP_LS0010	chr5:111730935|111730980:+	NREP	neuronal regeneration related protein	protein coding gene	no	.	4.722	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
MRPS35_LS001	chr12:27710955|27714780:+	MRPS35	mitochondrial ribosomal protein S35	protein coding gene	no	ENST00000081029.7;ENST00000538315.5;ENST00000542199.1	81.276	53.789	34.519	0.968(9270)	0.98(688)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PLXNB3_LS0036	chrX:153776135|153776356:+	PLXNB3	plexin B3	protein coding gene	no	.	0.874	0.697	0.000	0.016(155)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_LINC02306_UP_LS0016	chr14:26281280|26281496:-	LINC02306	long intergenic non-protein coding RNA 2306	lncRNA gene	no	.	2.433	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
TVP23A_LS007	chr16:10769478|10771670:-	TVP23A	trans-golgi network vesicle protein 23 homolog A	protein coding gene	no	ENST00000619408.1	0.170	0.097	0.700	0.187(1788)	0.175(123)	0.012(215)	non tumor-specific	nAS	yes
UN_NDUFB1_LS0004	chr14:92118966|92121280:-	NDUFB1	NADH:ubiquinone oxidoreductase subunit B1	protein coding gene	no	.	26.601	8.270	0.000	0.004(41)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC244230.2_LS0032	chr10:46462694|46467356:-	AC244230.2	-	lncRNA gene	no	.	1.993	0.053	0.000	0.011(103)	0.001(1)	0(0)	non tumor-specific	nAS	no
TICRR_LS008	chr15:89595611|89599324:+	TICRR	TOPBP1 interacting checkpoint and replication regulator	protein coding gene	no	ENST00000268138.11;ENST00000560985.5	3.683	0.724	1.120	0.391(3742)	0.09(63)	0.176(3057)	non tumor-specific	exon_skip	yes
AC026310.2_LS002	chr12:24957240|24957934:+	AC026310.2	-	lncRNA gene	no	ENST00000546353.1	3.598	0.110	0.857	0.01(100)	0.001(1)	0.013(233)	non tumor-specific	nAS	yes
RRP8_LS002	chr11:6600582|6600669:-	RRP8	ribosomal RNA processing 8	protein coding gene	no	ENST00000254605.10;ENST00000534343.1;ENST00000526352.5;ENST00000533907.1	42.730	24.406	27.603	0.995(9537)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_PIK3CG_LS0007	chr7:106874807|106879519:+	PIK3CG	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein coding gene	no	.	1.233	0.099	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
CRYZL1_LS003	chr21:33589921|33602234:-	CRYZL1	crystallin zeta like 1	protein coding gene	no	ENST00000445393.5	0.025	0.020	0.634	0.173(1661)	0.205(144)	0.025(439)	non tumor-specific	nAS	yes
UN_POP1_LS0010	chr8:98147535|98148815:+	POP1	pyrin domain containing 1	protein coding gene	no	.	2.235	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CD81_LS0118	chr11:2397113|2397252:-	CD81	CD81 molecule	protein coding gene	no	.	2.960	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CHD5_LS043	chr1:6151155|6152412:-	CHD5	guided entry of tail-anchored proteins factor 1	protein coding gene	yes	ENST00000262450.7;ENST00000496404.1	4.647	6.132	1.849	0.075(717)	0.05(35)	0.497(8645)	non tumor-specific	nAS	yes
UN_CFH_UP_LS0008	chr1:195722034|195738116:+	CFH	complement factor H	protein coding gene	no	.	2.898	3.124	0.000	0.06(574)	0.093(65)	0(0)	non tumor-specific	nAS	no
ZNF490_LS005	chr19:12609202|12609870:-	ZNF490	zinc finger protein 490	protein coding gene	no	ENST00000414906.5	0.959	0.380	0.738	0.389(3728)	0.406(285)	0.232(4037)	non tumor-specific	exon_skip	yes
GGA1_LS009	chr22:37609154|37613033:+	GGA1	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein coding gene	no	ENST00000431745.5	0.504	0.193	0.675	0.046(444)	0.041(29)	0.009(165)	non tumor-specific	exon_skip	yes
ZNF213-AS1_LS003	chr16:3114887|3114968:-	ZNF213-AS1	ZNF213 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000572691.2	0.503	0.307	1.032	0.301(2884)	0.343(241)	0.501(8705)	non tumor-specific	nAS	yes
TUBA1B_LS009	chr12:49130344|49131298:-	TUBA1B	tubulin alpha 1b	protein coding gene	no	ENST00000552984.1	0.140	0.041	0.699	0.254(2432)	0.187(131)	0.195(3385)	non tumor-specific	alt_3prime;exon_skip	yes
AP003119.2_LS002	chr11:76782856|76782991:-	AP003119.2	-	lncRNA gene	no	ENST00000526585.1	1.263	0.564	1.277	0.499(4785)	0.514(361)	0.526(9150)	non tumor-specific	nAS	yes
UN_TLK2_UP_LS0006	chr17:62436004|62451532:+	TLK2	tousled like kinase 2	protein coding gene	no	.	4.753	0.900	0.000	0.068(650)	0.024(17)	0(0)	non tumor-specific	nAS	no
PANK4_LS019	chr1:2519954|2520322:-	PANK4	pantothenate kinase 4 (inactive)	protein coding gene	no	ENST00000378466.7;ENST00000435556.7;ENST00000505228.5;ENST00000486396.1	14.775	10.955	19.982	0.982(9410)	0.996(699)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MT-CO3_LS0016	chrM:9296|9522:-	MT-CO3	mitochondrially encoded cytochrome c oxidase III	protein coding gene	no	.	151.491	29.256	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
EIF2AK3_LS011	chr2:88588104|88588761:-	EIF2AK3	eukaryotic translation initiation factor 2 alpha kinase 3	protein coding gene	no	ENST00000419748.5;ENST00000303236.7;ENST00000415570.1	16.044	13.860	8.435	0.894(8568)	0.966(678)	0.957(16627)	non tumor-specific	nAS	yes
UN_RASSF8_LS0002	chr12:25959148|26064498:+	RASSF8	Ras association domain family member 8	protein coding gene	yes	.	1.180	0.439	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AP006245.2_UP_LS0015	chr8:36427064|36438296:-	AP006245.2	-	pseudogene	no	.	2.815	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PTPRE_LS006	chr10:128040990|128047390:+	PTPRE	protein tyrosine phosphatase receptor type E	protein coding gene	no	ENST00000254667.7;ENST00000442830.5;ENST00000471218.5;ENST00000455661.5	3.104	2.164	3.547	0.619(5929)	0.644(452)	0.854(14841)	non tumor-specific	exon_skip	yes
CREBZF_LS015	chr11:85663601|85682857:-	CREBZF	CREB/ATF bZIP transcription factor	protein coding gene	no	ENST00000534224.1	0.008	0.001	0.803	0.085(812)	0.1(70)	0.026(448)	non tumor-specific	nAS	yes
SMN1_LS020	chr5:70946815|70952439:+	SMN1	survival of motor neuron 1, telomeric	protein coding gene	no	ENST00000506239.6;ENST00000506239.6	0.057	0.104	0.644	0.625(5985)	0.637(447)	0.007(127)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AC079760.2_LS0021	chr7:91368323|91368514:-	AC079760.2	-	lncRNA gene	no	.	2.286	0.518	0.000	0.016(151)	0.011(8)	0(0)	non tumor-specific	nAS	no
B3GALT5_LS005	chr21:39646622|39659753:+	B3GALT5	beta-1,3-galactosyltransferase 5	protein coding gene	no	ENST00000380620.8	2.350	1.677	1.004	0.129(1232)	0.219(154)	0.164(2849)	non tumor-specific	exon_skip	yes
AJUBA_LS003	chr14:22974890|22974974:-	AJUBA	ajuba LIM protein	protein coding gene	no	ENST00000262713.6;ENST00000397388.7;ENST00000361265.8;ENST00000553592.5;ENST00000556731.5;ENST00000553911.1;ENST00000555479.1	27.048	19.267	9.679	0.964(9239)	0.974(684)	0.898(15607)	non tumor-specific	intron_retention	yes
UN_AC140172.1_UP_LS0007	chr5:21137035|21139067:+	AC140172.1	-	pseudogene	no	.	2.632	0.109	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MIR3144_UP_LS0057	chr6:119843107|119844567:+	MIR3144	microRNA 3144	small non-coding RNA gene	no	.	2.700	0.861	0.000	0.012(115)	0.027(19)	0(0)	non tumor-specific	nAS	no
Z94721.2_LS019	chr6:167136143|167136240:+	Z94721.2	-	lncRNA gene	no	ENST00000609590.1	2.212	1.353	1.082	0.514(4926)	0.677(475)	0.402(6993)	non tumor-specific	nAS	yes
DDN-AS1_LS005	chr12:49009389|49018236:+	DDN-AS1	DDN and PRKAG1 antisense RNA 1	lncRNA gene	no	ENST00000552284.1;ENST00000547395.1	1.515	0.282	1.239	0.293(2803)	0.09(63)	0.249(4323)	non tumor-specific	nAS	yes
UN_CTSD_LS0082	chr11:1752984|1753139:+	CTSD	cathepsin D	protein coding gene	no	.	11.005	2.325	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TEAD3_LS0029	chr6:35474189|35474907:+	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	1.805	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLS3-AS1_LS0012	chrX:115520653|115562626:-	PLS3-AS1	PLS3 antisense RNA 1	lncRNA gene	no	.	1.159	0.374	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CDC42EP5_LS0010	chr19:54472503|54472841:-	CDC42EP5	CDC42 effector protein 5	protein coding gene	no	.	15.390	3.769	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC116003.2_LS001	chr18:75433356|75436864:-	AC116003.2	-	lncRNA gene	no	ENST00000579278.1	0.783	0.000	0.818	0.001(10)	0(0)	0.001(25)	non tumor-specific	nAS	yes
MYCBP2_LS059	chr13:77174489|77176497:-	MYCBP2	MYC binding protein 2	protein coding gene	no	ENST00000544440.6;ENST00000357337.10	10.747	6.930	7.493	0.595(5700)	0.796(559)	0.947(16466)	non tumor-specific	nAS	yes
UN_MEF2A_LS0047	chr15:99671669|99674393:+	MEF2A	myocyte enhancer factor 2A	protein coding gene	no	.	3.082	0.541	0.000	0.03(285)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LINC01001_LS0020	chr11:128484|128533:-	LINC01001	long intergenic non-protein coding RNA 1001	lncRNA gene	no	.	1.807	0.022	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM210B_LS0012	chr20:56367378|56367514:-	FAM210B	family with sequence similarity 210 member B	protein coding gene	no	.	11.180	0.801	0.000	0.005(49)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NBPF13P_LS0018	chr1:147036788|147042950:-	NBPF13P	NBPF member 13, pseudogene	pseudogene	no	.	3.274	0.293	0.000	0.008(81)	0.007(5)	0(0)	non tumor-specific	nAS	no
PGLYRP4_LS003	chr1:153337299|153340381:-	PGLYRP4	peptidoglycan recognition protein 4	protein coding gene	no	ENST00000359650.9;ENST00000368739.3	5.676	3.848	11.610	0.17(1631)	0.077(54)	0.172(2997)	non tumor-specific	exon_skip	yes
UN_KRT8P37_UP_LS0009	chr10:8616570|8657148:-	KRT8P37	keratin 8 pseudogene 37	pseudogene	no	.	1.779	0.283	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WDR27_LS0089	chr6:169666671|169667136:-	WDR27	WD repeat domain 27	protein coding gene	no	.	1.841	0.107	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PHEX-AS1_UP_LS0004	chrX:22254065|22258013:-	PHEX-AS1	PHEX antisense RNA 1	lncRNA gene	no	.	1.638	0.614	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MSH3_LS0060	chr5:80872238|80873116:+	MSH3	mutS homolog 3	protein coding gene	no	.	2.460	1.858	0.000	0.011(105)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
GABRA5_LS005	chr15:26867418|26868729:+	GABRA5	gamma-aminobutyric acid type A receptor subunit alpha5	protein coding gene	no	ENST00000554038.5;ENST00000557449.5	0.314	0.113	3.515	0.047(450)	0.019(13)	0.133(2306)	non tumor-specific	alt_5prime	yes
UN_TMEFF1_LS0001	chr9:100513333|100516678:+	TMEFF1	transmembrane protein with EGF like and two follistatin like domains 1	protein coding gene	yes	.	3.372	0.657	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LDB3_LS0004	chr10:86680157|86691896:+	LDB3	LIM domain binding 3	protein coding gene	no	.	2.806	2.815	0.000	0.008(77)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
LRRK1_LS017	chr15:101022478|101024800:+	LRRK1	leucine rich repeat kinase 1	protein coding gene	no	.;.	0.944	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_NOTCH3_LS0218	chr19:15192106|15192197:+	NOTCH3	notch receptor 3	protein coding gene	yes	.	4.602	0.408	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
DENND5A_LS037	chr11:9179073|9180767:-	DENND5A	DENN domain containing 5A	protein coding gene	no	ENST00000328194.7;ENST00000530044.5;ENST00000526707.5	43.903	28.671	50.457	0.934(8944)	0.986(692)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
MYL12A_LS022	chr18:3254050|3255746:+	MYL12A	myosin light chain 12A	protein coding gene	no	ENST00000579226.5;ENST00000217652.7;ENST00000578611.5;ENST00000580887.5;ENST00000536605.1;ENST00000579226.5;ENST00000217652.7;ENST00000578611.5;ENST00000580887.5;ENST00000536605.1	949.269	635.596	929.457	0.99(9487)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NCAPG2_LS0024	chr7:158662367|158662992:-	NCAPG2	non-SMC condensin II complex subunit G2	protein coding gene	no	.	2.307	0.298	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
GAPDH_LS012	chr12:6536607|6536684:+	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	ENST00000619601.1	258.500	4.784	1.243	0.016(153)	0.075(53)	0.657(11414)	non tumor-specific	nAS	yes
UN_MYO15B_LS0006	chr17:75592301|75592474:+	MYO15B	myosin XVB	protein coding gene	no	.	3.784	0.281	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PCIF1_LS0006	chr20:45936123|45937418:+	PCIF1	PDX1 C-terminal inhibiting factor 1	protein coding gene	no	.	0.941	0.097	0.000	0.007(67)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PDCD1_LS0002	chr2:241852077|241852198:-	PDCD1	programmed cell death 1	protein coding gene	no	.	2.962	0.174	0.000	0.008(76)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_CTNS_LS0013	chr17:3638957|3650164:-	CTNS	cystinosin, lysosomal cystine transporter	protein coding gene	no	.	1.386	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GLMP_LS020	chr1:156293576|156293990:-	GLMP	glycosylated lysosomal membrane protein	protein coding gene	no	.;.	40.817	6.992	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_PPWD1_LS0013	chr5:65583214|65585014:+	PPWD1	peptidylprolyl isomerase domain and WD repeat containing 1	protein coding gene	no	.	4.233	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
KRT8_LS005	chr12:52900062|52900588:-	KRT8	keratin 8	protein coding gene	no	.;.	550.251	279.039	0.000	0.062(598)	0.046(32)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TMEM182_LS0021	chr2:102806773|102814748:+	TMEM182	transmembrane protein 182	protein coding gene	no	.	0.640	0.237	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AP000936.2_UP_LS0002	chr11:117138505|117205971:-	AP000936.2	-	pseudogene	no	.	1.403	1.127	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_OR5A2_UP_LS0004	chr11:59560877|59561136:-	OR5A2	olfactory receptor family 5 subfamily A member 2	protein coding gene	no	.	1.600	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC107208.1_UP_LS0002	chr4:155496474|155512337:+	AC107208.1	-	lncRNA gene	no	.	2.954	0.135	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C7orf31_LS0001	chr7:25136793|25140060:-	C7orf31	chromosome 7 open reading frame 31	protein coding gene	no	.	1.991	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL161646.2_UP_LS0006	chr10:104350333|104358341:+	AL161646.2	-	lncRNA gene	no	.	1.024	0.108	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBAK-RBAKDN_LS008	chr7:5063755|5072362:+	RBAK-RBAKDN	RBAK-RBAKDN readthrough	protein coding gene	no	ENST00000407184.5	1.042	0.328	0.897	0.199(1905)	0.104(73)	0.439(7628)	non tumor-specific	exon_skip	yes
UN_MZF1_LS0015	chr19:58562315|58562652:+	MZF1	myeloid zinc finger 1	protein coding gene	no	.	3.583	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE2E3_LS0003	chr2:180980187|180980942:+	UBE2E3	ubiquitin conjugating enzyme E2 E3	protein coding gene	no	.	0.355	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
CIZ1_LS025	chr9:128178490|128178709:-	CIZ1	CDKN1A interacting zinc finger protein 1	protein coding gene	yes	ENST00000372954.5;ENST00000393608.5;ENST00000357558.9;ENST00000538431.5;ENST00000629610.2;ENST00000277465.8;ENST00000372948.7;ENST00000372938.9;ENST00000634901.1;ENST00000415526.5;ENST00000476239.5	84.145	51.251	94.314	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
RBM24_LS004	chr6:17282928|17284657:+	RBM24	RNA binding motif protein 24	protein coding gene	no	ENST00000379052.9;ENST00000509686.5;ENST00000425446.6;ENST00000503965.5;ENST00000318204.5	4.102	4.896	5.375	0.507(4855)	0.816(573)	0.821(14272)	non tumor-specific	nAS	yes
ZFP64_LS011	chr20:52153428|52160123:-	ZFP64	ZFP64 zinc finger protein	protein coding gene	no	ENST00000346617.8;ENST00000371515.8;ENST00000216923.4	13.788	6.959	6.541	0.962(9213)	0.98(688)	0.955(16594)	non tumor-specific	nAS	yes
PRPF4B_LS004	chr6:4040927|4042487:+	PRPF4B	pre-mRNA processing factor 4B	protein coding gene	no	ENST00000480058.5;ENST00000337659.10;ENST00000481109.5;ENST00000490399.5;ENST00000463634.6	47.342	32.285	42.129	0.971(9301)	0.99(695)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0326	chr6:31817361|31829331:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	207.765	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TAPBP_LS010	chr6:33304217|33304297:-	TAPBP	TAP binding protein	protein coding gene	no	ENST00000434618.6;ENST00000475304.5;ENST00000489157.5;ENST00000426633.6	133.532	79.397	54.565	0.997(9555)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CC2D1B_LS024	chr1:52357698|52357781:-	CC2D1B	coiled-coil and C2 domain containing 1B	protein coding gene	no	ENST00000371586.6;ENST00000491136.6;ENST00000284376.7;ENST00000438021.5;ENST00000460261.5;ENST00000450942.2	28.690	15.994	31.028	0.99(9481)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RRBP1_LS0102	chr20:17658710|17659695:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	17.709	2.421	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
IDUA_LS009	chr4:1002485|1002732:+	IDUA	alpha-L-iduronidase	protein coding gene	no	ENST00000247933.8;ENST00000514698.5;ENST00000514224.1	5.874	3.463	28.605	0.906(8676)	0.907(637)	0.978(17004)	non tumor-specific	alt_5prime;exon_skip	yes
SEL1L_LS013	chr14:81498494|81499459:-	SEL1L	SEL1L adaptor subunit of ERAD E3 ubiquitin ligase	protein coding gene	no	ENST00000336735.8;ENST00000554744.1	24.208	23.411	14.108	0.952(9118)	0.99(695)	0.97(16864)	non tumor-specific	nAS	yes
UN_HRH1_LS0079	chr3:11207398|11210269:-	HRH1	histamine receptor H1	protein coding gene	no	.	1.363	0.346	0.000	0.012(112)	0.006(4)	0(0)	non tumor-specific	nAS	no
ATF2_LS024	chr2:175118369|175121444:-	ATF2	glial cell derived neurotrophic factor	protein coding gene	no	ENST00000264110.6;ENST00000426833.7;ENST00000409437.5;ENST00000435004.6;ENST00000428760.5;ENST00000392544.5;ENST00000417080.5;ENST00000421438.5;ENST00000429579.5;ENST00000409833.5	21.676	15.918	12.453	0.942(9022)	0.979(687)	0.975(16947)	non tumor-specific	alt_3prime;exon_skip	yes
KLHDC8A_LS017	chr1:205356569|205356988:-	KLHDC8A	kelch domain containing 8A	protein coding gene	no	ENST00000539253.5;ENST00000367156.7;ENST00000607173.5;ENST00000606887.5;ENST00000606111.1	0.711	0.208	1.023	0.068(652)	0.024(17)	0.087(1506)	non tumor-specific	nAS	yes
UN_ERO1A_LS0057	chr14:52683907|52694872:-	ERO1A	endoplasmic reticulum oxidoreductase 1 alpha	protein coding gene	no	.	1.144	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ITIH5_LS010	chr10:7586069|7600529:-	ITIH5	inter-alpha-trypsin inhibitor heavy chain 5	protein coding gene	no	ENST00000461751.1	0.239	0.128	0.703	0.117(1120)	0.385(270)	0.075(1297)	non tumor-specific	exon_skip	yes
NOTCH4_LS035	chr6:32222572|32223856:-	NOTCH4	notch receptor 4	protein coding gene	yes	.;.	0.300	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ATP6V1C1_LS012	chr8:103053982|103055868:+	ATP6V1C1	ATPase H+ transporting V1 subunit C1	protein coding gene	no	ENST00000518857.5;ENST00000395862.7;ENST00000521514.5;ENST00000518738.1;ENST00000521671.1	89.345	56.794	40.479	0.992(9509)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip;intron_retention	yes
PPFIA3_LS030	chr19:49148258|49148666:+	PPFIA3	PTPRF interacting protein alpha 3	protein coding gene	no	ENST00000334186.8;ENST00000602655.5;ENST00000602351.5;ENST00000602848.5;ENST00000602897.1	15.289	11.461	4.492	0.912(8737)	0.859(603)	0.861(14962)	non tumor-specific	alt_3prime;intron_retention	yes
OPRL1_LS006	chr20:64080352|64092688:+	OPRL1	opioid related nociceptin receptor 1	protein coding gene	no	ENST00000355631.8;ENST00000355631.8	1.515	0.641	0.836	0.386(3700)	0.396(278)	0.293(5088)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_APOE_LS0206	chr19:44909103|44909276:-	APOE	apolipoprotein E	protein coding gene	no	.	32.780	8.680	0.000	0.01(95)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MEI1_LS0020	chr22:41755386|41758365:+	MEI1	meiotic double-stranded break formation protein 1	protein coding gene	no	.	2.908	0.518	0.000	0.006(57)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_KCNIP3_LS0004	chr2:95297453|95374296:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	.	1.127	1.277	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_ADIPOQ_UP_LS0004	chr3:186826034|186826552:+	ADIPOQ	adiponectin, C1Q and collagen domain containing	protein coding gene	no	.	0.605	0.092	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTH2R_LS025	chr2:208819655|208824195:+	PTH2R	parathyroid hormone 2 receptor	protein coding gene	no	.;.	2.970	0.511	0.000	0.01(92)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_KRTAP5-10_UP_LS0019	chr11:71563754|71564565:+	KRTAP5-10	keratin associated protein 5-10	protein coding gene	no	.	3.645	0.425	0.000	0.018(175)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TMC3-AS1_LS0005	chr15:81380254|81400793:+	TMC3-AS1	TMC3 antisense RNA 1	lncRNA gene	no	.	3.128	0.107	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDK18_LS008	chr1:205517034|205523147:+	CDK18	cyclin dependent kinase 18	protein coding gene	no	ENST00000507240.1	0.181	0.071	0.700	0.296(2834)	0.283(199)	0.017(296)	non tumor-specific	nAS	yes
UN_RPL8_LS0123	chr8:144791495|144791629:-	RPL8	ribosomal protein L8	protein coding gene	no	.	504.296	0.083	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_5prime;mutex_exons	no
UN_PUM2_LS0055	chr2:20311678|20312236:-	PUM2	pumilio RNA binding family member 2	protein coding gene	no	.	6.091	0.039	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CA4_LS016	chr17:60157788|60158061:+	CA4	carbonic anhydrase 4	protein coding gene	no	ENST00000300900.8	14.091	128.573	15.532	0.466(4460)	0.839(589)	0.916(15922)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SLC35A5_UP_LS0020	chr3:112419534|112420791:+	SLC35A5	solute carrier family 35 member A5	protein coding gene	no	.	8.213	3.282	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
MTMR11_LS017	chr1:149933530|149933855:-	MTMR11	myotubularin related protein 11	protein coding gene	no	.;.;.	2.517	0.360	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RMND1_LS0018	chr6:151423655|151427482:-	RMND1	required for meiotic nuclear division 1 homolog	protein coding gene	no	.	17.449	2.864	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_AC126335.2_UP_LS0005	chr15:20973303|21047861:+	AC126335.2	-	lncRNA gene	no	.	2.953	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SEMA4A_LS030	chr1:156174847|156175086:+	SEMA4A	semaphorin 4A	protein coding gene	no	.;.	0.998	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
C9orf135_LS012	chr9:69902388|69905954:+	C9orf135	chromosome 9 open reading frame 135	protein coding gene	no	ENST00000529131.5	0.014	0.022	0.873	0.019(179)	0.046(32)	0.022(380)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FAM81A_LS0014	chr15:59408154|59409585:-	FAM81A	family with sequence similarity 81 member A	protein coding gene	no	.	2.086	0.371	0.000	0.02(195)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_AC073114.1_UP_LS0004	chr7:110010772|110019255:+	AC073114.1	-	pseudogene	no	.	4.281	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
COL4A6_LS007	chrX:108164698|108164877:-	COL4A6	collagen type IV alpha 6 chain	protein coding gene	no	ENST00000334504.11;ENST00000372216.8;ENST00000621266.4;ENST00000394872.6;ENST00000545689.2	8.403	8.678	3.910	0.306(2935)	0.632(444)	0.717(12467)	non tumor-specific	exon_skip	yes
UN_GDF15_LS0018	chr19:18386375|18388309:-	GDF15	growth differentiation factor 15	protein coding gene	no	.	2.044	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC103_LS002	chr17:44899829|44900990:+	CCDC103	coiled-coil domain containing 103	protein coding gene	no	ENST00000410006.6	0.218	0.202	0.919	0.695(6662)	0.688(483)	0.343(5968)	non tumor-specific	alt_5prime	yes
DISP3_LS017	chr1:11531033|11531565:+	DISP3	dispatched RND transporter family member 3	protein coding gene	no	ENST00000294484.6	5.039	0.835	2.452	0.171(1635)	0.021(15)	0.312(5429)	non tumor-specific	alt_3prime	yes
DENND1C_LS036	chr19:6480051|6481679:-	DENND1C	DENN domain containing 1C	protein coding gene	no	ENST00000381480.6	2.025	0.976	1.216	0.461(4421)	0.457(321)	0.421(7324)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GIGYF1_LS011	chr7:100683916|100684020:-	GIGYF1	GRB10 interacting GYF protein 1	protein coding gene	no	.;.	3.111	0.430	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EVI5L_LS022	chr19:7862018|7862122:+	EVI5L	ecotropic viral integration site 5 like	protein coding gene	no	ENST00000270530.8;ENST00000538904.6	17.226	11.071	21.779	0.969(9281)	0.977(686)	0.979(17012)	non tumor-specific	nAS	yes
HOMER2_LS001	chr15:82847247|82849689:-	HOMER2	homer scaffold protein 2	protein coding gene	yes	ENST00000558090.2	0.651	0.389	1.208	0.424(4066)	0.597(419)	0.403(7009)	non tumor-specific	alt_3prime;intron_retention	yes
C1GALT1_LS016	chr7:7238922|7243524:+	C1GALT1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein coding gene	no	ENST00000436587.6;ENST00000223122.3	22.873	12.190	15.200	0.991(9491)	0.993(697)	0.978(17007)	non tumor-specific	alt_3prime	yes
UN_ZNF205_LS0030	chr16:3119379|3119705:-	ZNF205	zinc finger protein 205	protein coding gene	no	.	0.816	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF880_LS008	chr19:52374427|52383849:+	ZNF880	zinc finger protein 880	protein coding gene	no	ENST00000422689.2;ENST00000422689.2	7.464	5.960	5.879	0.866(8294)	0.913(641)	0.94(16339)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UTY_LS028	chrY:13358521|13359767:-	UTY	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein coding gene	no	.;.	0.600	1.001	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
C20orf96_LS008	chr20:277383|278330:-	C20orf96	chromosome 20 open reading frame 96	protein coding gene	no	ENST00000382369.9;ENST00000360321.6;ENST00000400269.4	33.330	16.537	24.394	0.983(9422)	0.986(692)	0.977(16976)	non tumor-specific	nAS	yes
UN_TXNDC11_LS0035	chr16:11704064|11721577:-	TXNDC11	thioredoxin domain containing 11	protein coding gene	no	.	0.645	0.169	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LINC01081_LS0007	chr16:86273135|86278047:+	LINC01081	long intergenic non-protein coding RNA 1081	lncRNA gene	no	.	0.977	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
FAAHP1_LS002	chr1:46435248|46435912:+	FAAHP1	fatty acid amide hydrolase pseudogene 1	pseudogene	no	ENST00000606395.1	0.642	0.230	1.536	0.142(1362)	0.151(106)	0.619(10751)	non tumor-specific	nAS	yes
UN_ZNF628_LS0010	chr19:55479917|55480267:+	ZNF628	zinc finger protein 628	protein coding gene	no	.	1.296	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_TUBB3P1_UP_LS0007	chr6:89118172|89149265:+	TUBB3P1	tubulin beta 3 class III pseudogene 1	pseudogene	no	.	1.322	0.181	0.000	0.014(130)	0.001(1)	0(0)	non tumor-specific	nAS	no
TFEB_LS008	chr6:41689811|41690663:-	TFEB	transcription factor EB	protein coding gene	no	ENST00000343317.10;ENST00000230323.8;ENST00000358871.6;ENST00000403298.8;ENST00000373033.5;ENST00000394283.5;ENST00000419396.5;ENST00000416140.5;ENST00000419574.5	37.800	28.696	28.154	0.986(9447)	0.996(699)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KHSRP_LS0173	chr19:6424704|6424758:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	.	1.163	0.087	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
HERC2P9_LS014	chr15:28637630|28640259:+	HERC2P9	hect domain and RLD 2 pseudogene 9	pseudogene	no	ENST00000529624.5;ENST00000524476.5;ENST00000529353.1	4.740	2.562	2.007	0.82(7853)	0.86(604)	0.78(13560)	non tumor-specific	nAS	yes
UN_TECPR1_LS0035	chr7:98240354|98240851:-	TECPR1	tectonin beta-propeller repeat containing 1	protein coding gene	no	.	2.273	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOXB7_LS0060	chr17:48623135|48633514:-	HOXB7	homeobox B7	protein coding gene	no	.	4.791	0.848	0.000	0.065(623)	0.053(37)	0(0)	non tumor-specific	nAS	no
UN_AC015722.2_UP_LS0001	chr15:98321942|98324127:-	AC015722.2	-	lncRNA gene	no	.	5.225	0.361	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_STXBP6_UP_LS0001	chr14:25093935|25102054:-	STXBP6	syntaxin binding protein 6	protein coding gene	no	.	3.700	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL30P3_UP_LS0011	chr2:9139253|9145603:-	RPL30P3	ribosomal protein L30 pseudogene 3	pseudogene	no	.	1.540	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CRYL1_LS011	chr13:20439754|20472966:-	CRYL1	crystallin lambda 1	protein coding gene	no	ENST00000643035.1;ENST00000644153.1	6.084	0.465	0.000	0.016(150)	0.004(3)	0(0)	non tumor-specific	exon_skip	yes
PIPOX_LS004	chr17:28952476|28953364:+	PIPOX	pipecolic acid and sarcosine oxidase	protein coding gene	no	ENST00000577182.5	0.411	0.090	0.670	0.004(36)	0.001(1)	0.087(1511)	non tumor-specific	alt_5prime;intron_retention	yes
UN_NXNL2_LS0002	chr9:88534300|88535399:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	.	1.512	0.122	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SETDB2_LS0030	chr13:49480363|49480947:+	SETDB2	SET domain bifurcated histone lysine methyltransferase 2	protein coding gene	no	.	4.090	0.665	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_KCP_LS0136	chr7:128892433|128895976:+	KCP	kielin cysteine rich BMP regulator	protein coding gene	no	.	4.471	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MTMR14_LS005	chr3:9649742|9683178:+	MTMR14	myotubularin related protein 14	protein coding gene	no	ENST00000420925.5	0.013	0.013	0.615	0.254(2429)	0.255(179)	0.006(100)	non tumor-specific	nAS	yes
FLYWCH2_LS007	chr16:2896771|2899049:+	FLYWCH2	FLYWCH family member 2	protein coding gene	no	ENST00000396958.7;ENST00000293981.10;ENST00000396958.7;ENST00000293981.10	72.797	36.166	53.211	0.943(9038)	0.952(668)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HNRNPAB_LS006	chr5:178207225|178210132:+	HNRNPAB	heterogeneous nuclear ribonucleoprotein A/B	protein coding gene	no	.;.	8.974	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZFP69B_LS0004	chr1:40457071|40457341:+	ZFP69B	ZFP69 zinc finger protein B	protein coding gene	no	.	2.616	0.701	0.000	0.108(1033)	0.027(19)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC122108.2_UP_LS0016	chr15:44797129|44810418:-	AC122108.2	-	lncRNA gene	no	.	2.698	0.445	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01422_UP_LS0023	chr22:26877413|26884848:+	LINC01422	long intergenic non-protein coding RNA 1422	lncRNA gene	no	.	5.277	1.194	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SLC35D2_LS0004	chr9:96324169|96343904:-	SLC35D2	solute carrier family 35 member D2	protein coding gene	no	.	5.124	1.762	0.000	0.038(368)	0.021(15)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LINC00284_LS009	chr13:44022668|44028306:+	LINC00284	non-coding RNA in the aldehyde dehydrogenase 1A pathway	lncRNA gene	no	ENST00000617476.1	0.166	0.164	0.695	0.031(293)	0.114(80)	0.003(55)	non tumor-specific	nAS	yes
UN_AES_LS0148	chr19:3053586|3053918:+	AES	TLE family member 5, transcriptional modulator	protein coding gene	no	.	2.098	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GORAB_LS0012	chr1:170540665|170542491:+	GORAB	golgin, RAB6 interacting	protein coding gene	yes	.	1.747	0.022	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNMT3A_LS030	chr2:25248252|25251912:-	DNMT3A	DNA methyltransferase 3 alpha	protein coding gene	yes	ENST00000496570.1	0.597	0.194	0.730	0.596(5711)	0.433(304)	0.198(3442)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TRAF3IP2_LS0011	chr6:111565282|111570085:+	TRAF3IP2	TRAF3 interacting protein 2	protein coding gene	no	.	0.488	0.152	0.000	0.012(116)	0.017(12)	0(0)	non tumor-specific	nAS	no
CAST_LS015	chr5:96702915|96722639:+	CAST	RNA polymerase I subunit G	protein coding gene	no	ENST00000395813.5;ENST00000511049.5;ENST00000309190.9;ENST00000510156.5;ENST00000508117.6;ENST00000509903.5;ENST00000511782.5;ENST00000504465.5;ENST00000508197.1;ENST00000395813.5;ENST00000511049.5;ENST00000309190.9;ENST00000510156.5;ENST00000508117.6;ENST00000509903.5;ENST00000511782.5;ENST00000504465.5;ENST00000508197.1	8.071	8.369	14.252	0.885(8477)	0.915(642)	0.976(16965)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PTGIS_LS0009	chr20:49504629|49566166:+	PTGIS	prostaglandin I2 synthase	protein coding gene	no	.	2.970	0.364	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	nAS	no
STEAP3_LS007	chr2:119239430|119245489:+	STEAP3	STEAP3 metalloreductase	protein coding gene	no	ENST00000393106.6	3.241	2.367	1.769	0.739(7081)	0.858(602)	0.682(11861)	non tumor-specific	exon_skip;mutex_exons	yes
CACHD1_LS001	chr1:64470942|64550594:+	CACHD1	cache domain containing 1	protein coding gene	no	ENST00000290039.5	1.864	1.843	3.879	0.562(5383)	0.818(574)	0.853(14820)	non tumor-specific	nAS	yes
PARK7_LS001	chr1:7954323|7962763:+	PARK7	Parkinsonism associated deglycase	protein coding gene	yes	ENST00000493373.5	0.262	0.207	0.717	0.957(9165)	0.969(680)	0.131(2274)	non tumor-specific	alt_5prime	yes
MRPL20_LS014	chr1:1406346|1406909:-	MRPL20	mitochondrial ribosomal protein L20	protein coding gene	no	ENST00000477686.1	0.172	0.773	3.466	0.799(7654)	0.852(598)	0.92(15992)	non tumor-specific	alt_5prime;intron_retention	yes
UN_COL6A2_LS0041	chr21:46112162|46112259:-	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	.	3.417	1.836	0.000	0.016(154)	0.021(15)	0(0)	non tumor-specific	nAS	no
KCNIP3_LS008	chr2:95355282|95374296:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	ENST00000377181.2	0.712	0.000	0.635	0.001(5)	0(0)	0.008(135)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AHNAK2_LS0147	chr14:104942925|104950351:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.797	0.606	0.000	0.014(133)	0.013(9)	0(0)	non tumor-specific	nAS	no
LINC01902_LS008	chr18:39870968|39876388:+	LINC01902	long intergenic non-protein coding RNA 1902	lncRNA gene	no	ENST00000636983.1	2.458	0.000	0.727	0.001(6)	0(0)	0.037(637)	non tumor-specific	nAS	yes
PXN_LS034	chr12:120220091|120221623:-	PXN	paxillin	protein coding gene	no	ENST00000323871.9;ENST00000637617.1	0.624	1.210	2.366	0.203(1947)	0.276(194)	0.69(11992)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
LSR_LS019	chr19:35266532|35266839:+	LSR	lipolysis stimulated lipoprotein receptor	protein coding gene	no	ENST00000347609.8;ENST00000347609.8;ENST00000347609.8	0.025	0.025	0.746	0.243(2329)	0.242(170)	0.19(3305)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
IKZF3_LS001	chr17:39766493|39777651:-	IKZF3	IKAROS family zinc finger 3	protein coding gene	yes	ENST00000346872.7;ENST00000623724.3;ENST00000439167.6;ENST00000348427.7;ENST00000293068.9;ENST00000394189.6;ENST00000377944.7;ENST00000377958.6;ENST00000535189.5;ENST00000583368.1;ENST00000351680.7;ENST00000467757.5;ENST00000439016.2	3.394	1.301	1.205	0.496(4753)	0.574(403)	0.341(5934)	non tumor-specific	exon_skip	yes
SKIV2L_LS015	chr6:31962054|31962439:+	SKIV2L	Ski2 like RNA helicase	protein coding gene	no	ENST00000375394.6;ENST00000465703.5;ENST00000461073.5;ENST00000474839.5;ENST00000466290.1	43.832	23.606	43.345	0.987(9458)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime	yes
UN_LHX1-DT_LS0018	chr17:36871309|36878327:-	LHX1-DT	LHX1 divergent transcript	lncRNA gene	no	.	3.656	1.216	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SLC12A9_LS0069	chr7:100860232|100861392:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	.	5.012	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
GABRB3_LS017	chr15:26621534|26771999:-	GABRB3	gamma-aminobutyric acid type A receptor subunit beta3	protein coding gene	no	ENST00000636466.1	1.864	0.000	0.783	0(1)	0(0)	0.005(95)	non tumor-specific	nAS	yes
HSP90AA1_LS002	chr14:102082444|102083034:-	HSP90AA1	heat shock protein 90 alpha family class A member 1	protein coding gene	no	ENST00000216281.12;ENST00000334701.11	1473.083	763.648	527.023	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RAP1GAP_LS002	chr1:21597728|21597961:-	RAP1GAP	RAP1 GTPase activating protein	protein coding gene	yes	ENST00000290101.8;ENST00000374763.6;ENST00000374761.6;ENST00000471600.6;ENST00000374765.8;ENST00000611549.4;ENST00000542643.6;ENST00000495204.5	83.616	113.023	15.065	0.929(8897)	0.949(666)	0.868(15096)	non tumor-specific	exon_skip	yes
UN_AC090001.1_LS0009	chr12:95838416|95841614:-	AC090001.1	-	lncRNA gene	no	.	2.059	1.006	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL138881.1_LS0008	chr6:3595661|3623648:-	AL138881.1	-	lncRNA gene	no	.	1.218	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAM86C1_LS006	chr11:71789845|71793380:+	FAM86C1	family with sequence similarity 86 member C1, pseudogene	protein coding gene	no	ENST00000359244.8	0.844	0.580	0.807	0.41(3931)	0.511(359)	0.37(6423)	non tumor-specific	exon_skip	yes
UN_ERBIN_LS0023	chr5:66012139|66013549:+	ERBIN	erbb2 interacting protein	protein coding gene	no	.	4.715	1.558	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_RNU6-763P_UP_LS0002	chr2:174729824|174846931:+	RNU6-763P	RNA, U6 small nuclear 763, pseudogene	small non-coding RNA gene	no	.	19.834	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093582.1_UP_LS0027	chr7:65838090|65838183:+	AC093582.1	-	pseudogene	no	.	2.017	0.046	0.000	0.034(322)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAPK12_LS0037	chr22:50254486|50255197:-	MAPK12	mitogen-activated protein kinase 12	protein coding gene	no	.	5.737	0.499	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C7orf50_LS0079	chr7:1074533|1074633:+	C7orf50	chromosome 7 open reading frame 50	protein coding gene	no	.	4.225	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHVII-62-1_UP_LS0004	chr14:106652531|106675420:-	IGHVII-62-1	immunoglobulin heavy variable (II)-62-1 (pseudogene)	no	no	.	2.849	3.221	0.000	0.01(99)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_FAM241B_UP_LS0003	chr10:69575009|69576019:+	FAM241B	family with sequence similarity 241 member B	protein coding gene	no	.	5.104	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RFNG_LS011	chr17:82050764|82051012:-	RFNG	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein coding gene	no	ENST00000578356.1	0.117	0.192	1.329	0.899(8617)	0.895(628)	0.725(12602)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
METTL4_LS013	chr18:2567654|2571149:-	METTL4	methyltransferase like 4	protein coding gene	no	ENST00000319888.10;ENST00000574538.1;ENST00000577166.5;ENST00000574676.1	5.629	3.367	4.945	0.889(8515)	0.929(652)	0.958(16646)	non tumor-specific	alt_5prime	yes
CEP83_LS011	chr12:94335664|94367794:-	CEP83	centrosomal protein 83	protein coding gene	no	ENST00000397809.9;ENST00000339839.9;ENST00000397807.6;ENST00000547232.5	11.192	5.005	7.656	0.918(8799)	0.929(652)	0.959(16662)	non tumor-specific	alt_5prime;exon_skip	yes
NTN3_LS005	chr16:2473503|2473756:+	NTN3	netrin 3	protein coding gene	no	ENST00000293973.1	0.250	0.100	0.857	0.118(1133)	0.019(13)	0.146(2540)	non tumor-specific	nAS	yes
UN_VN1R82P_UP_LS0003	chr19:21103272|21172148:+	VN1R82P	vomeronasal 1 receptor 82 pseudogene	pseudogene	no	.	4.736	0.694	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KLF8_UP_LS0032	chrX:56205167|56205873:+	KLF8	Kruppel like factor 8	protein coding gene	yes	.	0.819	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SDF4_LS010	chr1:1223357|1223832:-	SDF4	stromal cell derived factor 4	protein coding gene	no	ENST00000360001.10;ENST00000465727.5;ENST00000263741.11;ENST00000403997.2	364.625	231.213	256.548	0.999(9575)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_AKR1C1_LS0020	chr10:4970398|4971920:-	AKR1C1	aldo-keto reductase family 1 member C1	protein coding gene	no	.	4.268	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF738_LS0006	chr19:21372261|21375238:+	ZNF738	zinc finger protein 738	protein coding gene	no	.	0.486	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
SRGAP3_LS031	chr3:9064581|9080025:-	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	ENST00000383836.7;ENST00000360413.7;ENST00000618999.4;ENST00000433332.7;ENST00000485983.6;ENST00000470951.5	3.521	3.270	2.649	0.564(5408)	0.644(452)	0.773(13443)	non tumor-specific	exon_skip	yes
AC090415.2_LS001	chr18:71000624|71001714:-	AC090415.2	-	lncRNA gene	no	ENST00000584078.1	1.429	0.009	0.761	0.002(19)	0.001(1)	0.006(97)	non tumor-specific	nAS	yes
UN_JPT2_LS0043	chr16:1700148|1700195:-	JPT2	Jupiter microtubule associated homolog 2	protein coding gene	no	.	1.736	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC3C_LS001	chr17:39941549|39943933:+	LRRC3C	leucine rich repeat containing 3C	protein coding gene	no	ENST00000377924.4	0.179	0.101	0.693	0.091(869)	0.125(88)	0.115(1995)	non tumor-specific	nAS	yes
UN_LUZP1_LS0021	chr1:23109127|23165551:-	LUZP1	leucine zipper protein 1	protein coding gene	no	.	0.767	0.167	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CYP4V2_LS011	chr4:186205058|186205200:+	CYP4V2	cytochrome P450 family 4 subfamily V member 2	protein coding gene	no	ENST00000502665.1	0.034	0.014	0.743	0.249(2382)	0.349(245)	0.166(2881)	non tumor-specific	intron_retention	yes
ANKDD1A_LS009	chr15:64917514|64921921:+	ANKDD1A	ankyrin repeat and death domain containing 1A	protein coding gene	no	ENST00000319580.12	0.064	0.296	1.229	0.153(1467)	0.313(220)	0.514(8930)	non tumor-specific	alt_5prime	yes
UN_TSPAN17_LS0033	chr5:176657791|176657871:-	TSPAN17	tetraspanin 17	protein coding gene	no	.	1.228	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PGGT1B_LS005	chr5:115222008|115230976:-	PGGT1B	protein geranylgeranyltransferase type I subunit beta	protein coding gene	no	ENST00000419445.5;ENST00000514178.5	22.557	16.618	9.651	0.975(9338)	0.991(696)	0.972(16899)	non tumor-specific	exon_skip	yes
LINC00632_LS005	chrX:140731044|140733878:+	LINC00632	long intergenic non-protein coding RNA 632	lncRNA gene	no	ENST00000498732.6;ENST00000650626.1	0.971	0.018	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_CDC42BPB_LS0043	chr14:102944032|102944138:-	CDC42BPB	CDC42 binding protein kinase beta	protein coding gene	no	.	1.477	3.528	0.000	0.005(50)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PTCD1_LS008	chr7:99429806|99433278:-	PTCD1	pentatricopeptide repeat domain 1	protein coding gene	no	ENST00000292478.8;ENST00000292478.8	22.695	10.098	6.906	0.977(9359)	0.987(693)	0.962(16720)	non tumor-specific	alt_5prime;exon_skip	yes
NBEAL1_LS012	chr2:203083525|203084463:+	NBEAL1	neurobeachin like 1	protein coding gene	no	ENST00000497505.5;ENST00000449802.5;ENST00000483147.1;ENST00000463830.1	0.878	1.602	2.597	0.734(7033)	0.852(598)	0.811(14091)	non tumor-specific	nAS	yes
ADAMTS19-AS1_LS001	chr5:129460079|129460425:-	ADAMTS19-AS1	ADAMTS19 antisense RNA 1	lncRNA gene	no	ENST00000502827.1	0.626	0.252	0.967	0.161(1542)	0.226(159)	0.185(3209)	non tumor-specific	nAS	yes
IL18BP_LS024	chr11:72000557|72001784:+	IL18BP	interleukin 18 binding protein	protein coding gene	no	ENST00000393707.4	0.008	0.004	0.661	0.042(407)	0.037(26)	0.021(359)	non tumor-specific	exon_skip	yes
UN_MIB2_LS0040	chr1:1627215|1627304:-	MIB2	mindbomb E3 ubiquitin protein ligase 2	protein coding gene	no	.	1.404	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OCA2_LS0036	chr15:27926254|27943274:-	OCA2	OCA2 melanosomal transmembrane protein	protein coding gene	no	.	4.010	0.077	0.000	0.008(79)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CHRNG_LS005	chr2:232540711|232542423:+	CHRNG	cholinergic receptor nicotinic gamma subunit	protein coding gene	no	ENST00000389492.3	0.470	0.053	1.824	0.012(111)	0.01(7)	0.04(693)	non tumor-specific	exon_skip	yes
ST7L_LS029	chr1:112607597|112610841:-	ST7L	suppression of tumorigenicity 7 like	protein coding gene	no	ENST00000477332.5;ENST00000473206.5	5.520	2.546	2.794	0.844(8090)	0.883(620)	0.912(15845)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RF00019_UP_LS0226	chr10:52423139|52479472:+	RF00019	-	small non-coding RNA gene	no	.	7.021	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
LARP7_LS029	chr4:112655510|112657247:+	LARP7	La ribonucleoprotein 7, transcriptional regulator	protein coding gene	no	ENST00000503898.1	0.058	0.040	0.781	0.161(1539)	0.251(176)	0.27(4695)	non tumor-specific	exon_skip;intron_retention	yes
UN_DIDO1_LS0017	chr20:62894189|62894413:-	DIDO1	death inducer-obliterator 1	protein coding gene	yes	.	2.861	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_ZNF358_LS0097	chr19:7520560|7520610:-	ZNF358	zinc finger protein 358	protein coding gene	no	.	2.407	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HECTD4_LS0066	chr12:112247076|112248067:-	HECTD4	HECT domain E3 ubiquitin protein ligase 4	protein coding gene	no	.	0.985	0.087	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CNDP1_LS015	chr18:74580271|74583561:+	CNDP1	carnosine dipeptidase 1	protein coding gene	no	ENST00000358821.7;ENST00000582365.1;ENST00000584004.5;ENST00000582461.1	4.632	18.214	1.551	0.285(2733)	0.362(254)	0.473(8222)	non tumor-specific	alt_3prime	yes
WAC_LS031	chr10:28614685|28616173:+	WAC	WW domain containing adaptor with coiled-coil	protein coding gene	no	ENST00000375664.8;ENST00000375646.5;ENST00000347934.8;ENST00000354911.8;ENST00000439676.5	94.083	68.089	85.673	0.991(9493)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SUZ12P1_LS0021	chr17:30742999|30743301:+	SUZ12P1	SUZ12 pseudogene 1	pseudogene	no	.	2.588	0.515	0.000	0.089(855)	0.038(27)	0(0)	non tumor-specific	nAS	no
UN_LINC02232_LS0013	chr4:64968985|64977489:-	LINC02232	long intergenic non-protein coding RNA 2232	lncRNA gene	no	.	2.580	0.084	0.000	0.006(61)	0.009(6)	0(0)	non tumor-specific	nAS	no
PLA2G6_LS025	chr22:38127458|38128269:-	PLA2G6	phospholipase A2 group VI	protein coding gene	no	ENST00000448094.5;ENST00000452794.5	1.306	1.163	15.110	0.84(8052)	0.811(569)	0.958(16657)	non tumor-specific	exon_skip;intron_retention	yes
LCTL_LS015	chr15:66563998|66565857:-	LCTL	lactase like	protein coding gene	no	ENST00000537670.5	0.788	0.000	1.081	0.051(490)	0(0)	0.062(1070)	non tumor-specific	exon_skip	yes
UN_LINC02294_UP_LS0001	chr14:27213676|27214694:-	LINC02294	long intergenic non-protein coding RNA 2294	lncRNA gene	no	.	2.752	0.093	0.000	0.01(94)	0.001(1)	0(0)	non tumor-specific	nAS	no
SPATA31D3_LS001	chr9:81944573|81945172:+	SPATA31D3	SPATA31 subfamily D member 3	protein coding gene	no	ENST00000445385.2	0.964	0.000	1.322	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
PTPRM_LS021	chr18:8143779|8244058:+	PTPRM	protein tyrosine phosphatase receptor type M	protein coding gene	no	ENST00000580170.5;ENST00000332175.12;ENST00000400053.8;ENST00000400060.8;ENST00000577468.2;ENST00000577827.5	21.502	18.210	34.823	0.889(8515)	0.98(688)	0.954(16583)	non tumor-specific	exon_skip	yes
C9orf57_LS003	chr9:72056843|72059235:-	C9orf57	chromosome 9 open reading frame 57	protein coding gene	no	ENST00000377024.7	1.150	0.000	0.633	0(4)	0(0)	0.002(43)	non tumor-specific	nAS	yes
PAK3_LS022	chrX:111147890|111152410:+	PAK3	p21 (RAC1) activated kinase 3	protein coding gene	no	ENST00000425146.5;ENST00000446737.5;ENST00000372010.5;ENST00000519681.5;ENST00000372007.9;ENST00000518291.5;ENST00000429193.5;ENST00000417227.5;ENST00000360648.8;ENST00000262836.6;ENST00000620137.3;ENST00000487802.1	0.795	1.744	2.324	0.265(2536)	0.393(276)	0.606(10531)	non tumor-specific	nAS	yes
UN_AC011287.1_LS0036	chr7:13102820|13102997:+	AC011287.1	-	lncRNA gene	no	.	2.153	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POLR2L_LS0017	chr11:840413|840459:+	POLR2L	RNA polymerase II, I and III subunit L	protein coding gene	no	.	1.540	0.310	0.000	0.006(53)	0.004(3)	0(0)	non tumor-specific	nAS	no
CBR3-AS1_LS005	chr21:36133074|36146256:-	CBR3-AS1	CBR3 antisense RNA 1	lncRNA gene	no	ENST00000453159.5;ENST00000623638.1	0.224	0.243	1.355	0.697(6674)	0.823(578)	0.554(9638)	non tumor-specific	nAS	yes
UN_CEP89_LS0012	chr19:32892669|32899857:-	CEP89	centrosomal protein 89	protein coding gene	no	.	1.060	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZYG11B_LS011	chr1:52801980|52802092:+	ZYG11B	zyg-11 family member B, cell cycle regulator	protein coding gene	no	ENST00000545132.5;ENST00000294353.6	9.447	9.951	5.588	0.836(8013)	0.953(669)	0.934(16230)	non tumor-specific	alt_5prime	yes
UN_SMARCA1_LS0007	chrX:129489081|129490060:-	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein coding gene	no	.	9.556	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
LSS_LS007	chr21:46191959|46194491:-	LSS	lanosterol synthase	protein coding gene	no	ENST00000356396.8;ENST00000397728.7;ENST00000419093.5;ENST00000457828.6;ENST00000522411.5	46.038	40.297	50.866	0.989(9474)	0.996(699)	0.979(17015)	non tumor-specific	intron_retention	yes
IFT140_LS023	chr16:1583386|1584217:-	IFT140	intraflagellar transport 140	protein coding gene	no	ENST00000426508.6;ENST00000565298.5;ENST00000397417.6;ENST00000439987.6	16.345	14.655	13.427	0.911(8725)	0.91(639)	0.964(16752)	non tumor-specific	exon_skip	yes
UN_PRMT8_LS0036	chr12:3539254|3540606:+	PRMT8	protein arginine methyltransferase 8	protein coding gene	no	.	1.139	0.207	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	nAS	no
CLDN4_LS009	chr7:73829489|73830964:+	CLDN4	claudin 4	protein coding gene	no	.;.;.	0.685	2.225	0.000	0.008(73)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HSF5_LS002	chr17:58458945|58462782:-	HSF5	heat shock transcription factor 5	protein coding gene	no	ENST00000323777.7	5.003	0.132	0.742	0.014(131)	0.003(2)	0.118(2044)	non tumor-specific	nAS	yes
LINC01632_LS001	chr1:144627237|144628537:-	LINC01632	long intergenic non-protein coding RNA 1632	lncRNA gene	no	ENST00000617368.1	9.437	0.234	0.947	0.016(158)	0.011(8)	0.064(1117)	non tumor-specific	nAS	yes
ATP2B2_LS012	chr3:10345575|10346031:-	ATP2B2	ATPase plasma membrane Ca2+ transporting 4	protein coding gene	no	ENST00000397077.6;ENST00000360273.6;ENST00000383800.8;ENST00000460129.5;ENST00000352432.9;ENST00000467702.3;ENST00000644553.1;ENST00000643662.1;ENST00000646379.1;ENST00000452124.2;ENST00000645850.1;ENST00000638646.2;ENST00000644807.1	9.776	9.507	3.571	0.216(2074)	0.15(105)	0.428(7434)	non tumor-specific	nAS	yes
FLNC_LS036	chr7:128850943|128851232:+	FLNC	filamin C	protein coding gene	no	ENST00000325888.12;ENST00000346177.6	22.730	43.860	21.206	0.705(6752)	0.887(623)	0.943(16388)	non tumor-specific	nAS	yes
UN_KRT8_LS0324	chr12:52945721|52949173:+	KRT8	keratin 8	protein coding gene	no	.	0.885	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZGRF1_LS007	chr4:112548380|112553835:-	ZGRF1	zinc finger GRF-type containing 1	protein coding gene	no	ENST00000445203.6;ENST00000505019.5;ENST00000506675.1	5.913	1.121	3.326	0.803(7696)	0.489(343)	0.904(15714)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ZNF703_LS0106	chr8:37698686|37698758:-	ZNF703	zinc finger protein 703	protein coding gene	yes	.	6.329	0.196	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	nAS	no
TBCE_LS005	chr1:235328778|235380019:+	TBCE	tubulin folding cofactor E	protein coding gene	no	ENST00000643418.1;ENST00000645351.1	0.411	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_MICAL1_LS0025	chr6:109451700|109451781:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	.	7.021	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_CAMKK1_LS0020	chr17:3880434|3882257:-	CAMKK1	calcium/calmodulin dependent protein kinase kinase 1	protein coding gene	no	.	1.216	0.053	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LGALS3_LS0045	chr14:55138216|55138253:-	LGALS3	galectin 3	protein coding gene	no	.	21.679	6.631	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPEF2_LS0028	chr5:35740219|35745100:-	SPEF2	sperm flagellar 2	protein coding gene	no	.	2.240	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
GYG1_LS006	chr3:148994277|148996302:+	GYG1	glycogenin 1	protein coding gene	no	ENST00000345003.8;ENST00000627418.2;ENST00000296048.10;ENST00000483267.5;ENST00000478067.1;ENST00000484197.5;ENST00000492285.6;ENST00000461191.1;ENST00000473005.1	36.349	24.974	45.531	0.986(9444)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AP000777.1_UP_LS0001	chr11:60834034|60834774:-	AP000777.1	-	lncRNA gene	no	.	2.200	1.115	0.000	0.012(111)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC012574.1_UP_LS0018	chr8:23668750|23679513:+	AC012574.1	-	lncRNA gene	no	.	3.293	2.351	0.000	0.027(254)	0.016(11)	0(0)	non tumor-specific	nAS	no
XAGE1B_LS009	chrX:52515573|52516980:-	XAGE1B	X antigen family member 1B	protein coding gene	no	ENST00000375613.7;ENST00000375616.5;ENST00000519579.1	7.257	0.137	0.660	0.247(2371)	0.219(154)	0.004(69)	non tumor-specific	alt_5prime;exon_skip	yes
PRPF8_LS018	chr17:1658763|1659357:-	PRPF8	pre-mRNA processing factor 8	protein coding gene	no	ENST00000304992.10;ENST00000572621.5	197.100	129.104	123.517	0.989(9479)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC009075.1_UP_LS0012	chr16:72269066|72284572:-	AC009075.1	-	lncRNA gene	no	.	3.331	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IFT122_LS0003	chr3:129454211|129455832:-	IFT122	intraflagellar transport 122	protein coding gene	no	.	1.699	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TCEA2_LS037	chr20:64070635|64071870:+	TCEA2	transcription elongation factor A2	protein coding gene	no	ENST00000361317.6;ENST00000343484.9;ENST00000395053.7;ENST00000465111.5;ENST00000458442.1;ENST00000495168.1;ENST00000461072.5;ENST00000475236.1	91.662	55.836	70.745	0.993(9515)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KCNAB1_LS0017	chr3:156455068|156456812:-	KCNAB1	potassium voltage-gated channel subfamily A member regulatory beta subunit 1	protein coding gene	no	.	2.530	0.829	0.000	0.011(103)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_RN7SL766P_UP_LS0004	chr13:21722197|21722552:+	RN7SL766P	RNA, 7SL, cytoplasmic 766, pseudogene	small non-coding RNA gene	no	.	7.101	2.818	0.000	0.007(63)	0.017(12)	0(0)	non tumor-specific	nAS	no
SHANK3_LS002	chr22:50675251|50676622:+	SHANK3	SH3 and multiple ankyrin repeat domains 3	protein coding gene	no	ENST00000414786.6;ENST00000445220.5;ENST00000262795.5	6.658	7.313	20.153	0.742(7105)	0.905(635)	0.918(15957)	non tumor-specific	nAS	yes
CENPN_LS002	chr16:81007445|81011930:+	CENPN	centromere protein N	protein coding gene	no	ENST00000564669.5	0.285	0.063	0.790	0.732(7013)	0.489(343)	0.224(3894)	non tumor-specific	alt_5prime	yes
UN_RACGAP1_LS0010	chr12:49989495|49989630:+	RACGAP1	Rac GTPase activating protein 1	protein coding gene	no	.	2.557	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DCLK3_UP_LS0003	chr3:36777779|36785327:-	DCLK3	doublecortin like kinase 3	protein coding gene	no	.	4.930	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP29_LS0054	chr1:94231643|94270959:-	ARHGAP29	Rho GTPase activating protein 29	protein coding gene	yes	.	0.966	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SMPD4_LS0068	chr2:130176637|130182264:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	.	1.373	1.275	0.000	0.113(1078)	0.114(80)	0(0)	non tumor-specific	alt_5prime	no
RETREG1_LS001	chr5:16473346|16474649:-	RETREG1	reticulophagy regulator 1	protein coding gene	no	ENST00000510362.5	0.079	0.046	0.706	0.262(2510)	0.423(297)	0.024(417)	non tumor-specific	intron_retention	yes
UN_LZIC_LS0010	chr1:9927728|9928012:+	LZIC	leucine zipper and CTNNBIP1 domain containing	protein coding gene	no	.	1.117	0.586	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACTL6A_LS011	chr3:179574501|179575403:+	ACTL6A	actin like 6A	protein coding gene	no	ENST00000468767.6	0.136	0.061	1.101	0.521(4990)	0.614(431)	0.595(10338)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NAV3_LS046	chr12:78188777|78189984:+	NAV3	neuron navigator 3	protein coding gene	no	ENST00000536525.6;ENST00000397909.6;ENST00000644176.1;ENST00000552895.5;ENST00000550788.1	1.066	1.255	3.308	0.281(2697)	0.326(229)	0.79(13737)	non tumor-specific	nAS	yes
CA3_LS003	chr8:85438943|85439712:+	CA3	carbonic anhydrase 3	protein coding gene	no	ENST00000285381.2;ENST00000522207.1	2.696	3.923	3.134	0.428(4098)	0.756(531)	0.859(14932)	non tumor-specific	intron_retention	yes
PRMT1_LS028	chr19:49685037|49686093:+	PRMT1	protein arginine methyltransferase 1	protein coding gene	no	ENST00000532489.5;ENST00000391851.8;ENST00000454376.6	275.400	141.044	216.479	0.988(9465)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
DNAH10_LS068	chr12:123917813|123918676:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	3.549	1.820	1.136	0.032(304)	0.07(49)	0.294(5109)	non tumor-specific	nAS	yes
LINC01498_LS003	chr12:108448886|108453751:-	LINC01498	long intergenic non-protein coding RNA 1498	lncRNA gene	no	ENST00000502160.6	10.252	0.000	0.811	0(3)	0(0)	0.087(1520)	non tumor-specific	nAS	yes
ABCC12_LS022	chr16:48105336|48108440:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	.;.	2.681	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
GALNT6_LS034	chr12:51383582|51391601:-	GALNT6	polypeptide N-acetylgalactosaminyltransferase 6	protein coding gene	no	ENST00000605822.5;ENST00000603482.5	0.249	0.235	1.092	0.637(6107)	0.714(501)	0.372(6470)	non tumor-specific	exon_skip;mutex_exons	yes
GTF2A2_LS020	chr15:59652326|59657406:-	GTF2A2	general transcription factor IIA subunit 2	protein coding gene	no	ENST00000396060.6;ENST00000396064.7;ENST00000484743.5;ENST00000559706.1;ENST00000480768.1;ENST00000396060.6;ENST00000396064.7;ENST00000484743.5;ENST00000559706.1;ENST00000480768.1	85.586	44.187	72.702	0.969(9284)	0.986(692)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MDM4_LS0025	chr1:204544669|204546797:+	MDM4	MDM4 regulator of p53	protein coding gene	yes	.	1.969	0.673	0.000	0.026(246)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TARDBP_LS023	chr1:11023329|11024064:+	TARDBP	TAR DNA binding protein	protein coding gene	no	ENST00000639599.1;ENST00000473869.5;ENST00000611963.4;ENST00000619555.4;ENST00000614494.1;ENST00000621573.1;ENST00000496840.1	0.964	0.431	8.641	0.843(8078)	0.842(591)	0.96(16687)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TAF5L_LS005	chr1:229610210|229614341:-	TAF5L	TATA-box binding protein associated factor 5 like	protein coding gene	no	ENST00000366676.5;ENST00000258281.6;ENST00000366675.3;ENST00000477957.1	21.269	13.432	11.400	0.964(9239)	0.989(694)	0.97(16855)	non tumor-specific	nAS	yes
UN_LAMTOR4_LS0012	chr7:100153966|100154010:-	LAMTOR4	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein coding gene	no	.	7.635	0.473	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
DPM2_LS009	chr9:127936655|127937818:-	DPM2	dolichyl-phosphate mannosyltransferase subunit 2, regulatory	protein coding gene	no	.;.	5.162	0.487	0.000	0.006(58)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LY6E_LS031	chr8:143023042|143023669:+	LY6E	lymphocyte antigen 6 family member E	protein coding gene	no	ENST00000519615.1	0.883	0.402	1.534	0.46(4403)	0.323(227)	0.6(10424)	non tumor-specific	exon_skip;intron_retention	yes
PDLIM3_LS014	chr4:185514337|185514703:-	PDLIM3	PDZ and LIM domain 3	protein coding gene	no	ENST00000504011.5	0.132	0.295	2.823	0.528(5056)	0.774(543)	0.652(11331)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_RCAN3_UP_LS0001	chr1:24413774|24419291:+	RCAN3	RCAN family member 3	protein coding gene	no	.	0.996	0.526	0.000	0.026(246)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
WDPCP_LS005	chr2:63174832|63313248:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000409354.6	0.114	0.191	1.834	0.547(5239)	0.573(402)	0.775(13476)	non tumor-specific	exon_skip	yes
PALMD_LS001	chr1:99646362|99662319:+	PALMD	palmdelphin	protein coding gene	no	ENST00000263174.8;ENST00000605497.5;ENST00000615664.1	9.504	17.662	21.981	0.845(8093)	0.909(638)	0.923(16048)	non tumor-specific	alt_5prime;exon_skip	yes
CLEC10A_LS011	chr17:7076987|7077997:-	CLEC10A	C-type lectin domain containing 10A	protein coding gene	no	ENST00000254868.8;ENST00000416562.6;ENST00000576617.5;ENST00000571664.1	7.376	11.205	7.567	0.711(6813)	0.925(649)	0.804(13971)	non tumor-specific	nAS	yes
LINC00698_LS003	chr3:62952083|62985036:+	LINC00698	long intergenic non-protein coding RNA 698	lncRNA gene	no	ENST00000475886.5	3.030	0.000	0.771	0.014(136)	0(0)	0.01(179)	non tumor-specific	nAS	yes
UN_H3F3B_LS0039	chr17:75778464|75778595:-	H3F3B	H3.3 histone B	protein coding gene	no	.	222.530	13.701	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PTPN12_LS024	chr7:77618565|77626705:+	PTPN12	protein tyrosine phosphatase non-receptor type 12	protein coding gene	yes	ENST00000248594.10;ENST00000415482.6;ENST00000435495.6	90.578	44.452	70.805	0.984(9424)	0.994(698)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
SMC6_LS012	chr2:17703292|17707219:-	SMC6	structural maintenance of chromosomes 6	protein coding gene	no	ENST00000448223.6;ENST00000351948.8;ENST00000402989.5;ENST00000446852.5	31.806	13.134	17.896	0.971(9303)	0.991(696)	0.977(16980)	non tumor-specific	exon_skip	yes
UN_PHF5A_LS0002	chr22:41459889|41460338:+	PHF5A	PHD finger protein 5A	protein coding gene	no	.	1.316	0.996	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL157944.1_LS0019	chr1:82623935|82625608:+	AL157944.1	-	lncRNA gene	no	.	1.563	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR5M14P_UP_LS0001	chr4:41734605|41741214:-	OR5M14P	olfactory receptor family 5 subfamily M member 14 pseudogene	pseudogene	no	.	2.231	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FCGR2A_LS0007	chr1:161511564|161513895:+	FCGR2A	Fc fragment of IgG receptor IIa	protein coding gene	no	.	3.232	0.442	0.000	0.009(87)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
ARHGAP23P1_LS003	chr16:33915486|33915767:-	ARHGAP23P1	Rho GTPase activating protein 23 pseudogene 1	pseudogene	no	ENST00000562773.1	1.586	0.352	0.660	0.036(346)	0.036(25)	0.075(1300)	non tumor-specific	nAS	yes
RECQL_LS013	chr12:21483574|21486479:-	RECQL	RecQ like helicase	protein coding gene	no	ENST00000444129.6;ENST00000421138.6;ENST00000396093.7;ENST00000314748.10	27.558	14.199	16.101	0.952(9124)	0.977(686)	0.975(16945)	non tumor-specific	exon_skip	yes
ZNF277_LS011	chr7:112336171|112337730:+	ZNF277	zinc finger protein 277	protein coding gene	no	ENST00000361822.7;ENST00000361946.8;ENST00000457808.5	34.237	21.680	23.248	0.994(9523)	0.997(700)	0.979(17014)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FARP2_LS0044	chr2:241465946|241468140:+	FARP2	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein coding gene	no	.	2.222	0.074	0.000	0.008(76)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_GBF1_LS0035	chr10:102360395|102362475:+	GBF1	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein coding gene	no	.	1.175	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RPSAP68_UP_LS0658	chr21:8401641|8445760:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	194.010	35.016	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	nAS	no
KRT1_LS016	chr12:52679954|52680060:-	KRT1	keratin 1	protein coding gene	no	.;.	153.523	60.511	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
GALNT7_LS017	chr4:173314176|173317634:+	GALNT7	polypeptide N-acetylgalactosaminyltransferase 15	protein coding gene	no	ENST00000265000.8;ENST00000505308.5;ENST00000503213.1;ENST00000265000.8;ENST00000505308.5;ENST00000503213.1	44.262	29.909	12.703	0.95(9106)	0.925(649)	0.966(16784)	non tumor-specific	alt_3prime;exon_skip	yes
AL031708.1_LS019	chr16:1668184|1669001:+	AL031708.1	-	protein coding gene	no	ENST00000454337.1	2.400	1.354	5.081	0.319(3053)	0.272(191)	0.934(16227)	non tumor-specific	alt_5prime	yes
UN_RPL7L1_LS0032	chr6:42887389|42889248:-	RPL7L1	ribosomal protein L7 like 1	protein coding gene	no	.	4.002	1.394	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	nAS	no
ADCY1_LS001	chr7:45574188|45574889:+	ADCY1	adenylate cyclase 1	protein coding gene	no	ENST00000432715.5	1.324	0.057	0.830	0.034(329)	0.017(12)	0.051(887)	non tumor-specific	nAS	yes
CYP4Z1_LS013	chr1:47115593|47116650:+	CYP4Z1	cytochrome P450 family 4 subfamily Z member 1	protein coding gene	no	ENST00000334194.3;ENST00000471598.1	0.969	0.946	2.103	0.218(2091)	0.352(247)	0.666(11584)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TAF15_LS0066	chr17:35842458|35844061:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	22.143	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC44A4_LS0045	chr6:31869252|31869540:-	SLC44A4	solute carrier family 44 member 4	protein coding gene	no	.	46.243	6.661	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
PRKCZ_LS015	chr1:2075133|2135262:+	PRKCZ	protein kinase C zeta	protein coding gene	no	ENST00000470596.5	0.003	0.002	1.521	0.037(355)	0.019(13)	0.096(1668)	non tumor-specific	nAS	yes
FBN2_LS006	chr5:128274683|128276038:-	FBN2	fibrillin 2	protein coding gene	no	ENST00000262464.8;ENST00000619499.4;ENST00000508053.5	10.657	2.293	1.666	0.483(4623)	0.338(237)	0.456(7930)	non tumor-specific	exon_skip	yes
DUSP3_LS008	chr17:43774938|43778800:-	DUSP3	dual specificity phosphatase 3	protein coding gene	no	ENST00000226004.7	42.588	39.953	42.019	0.972(9312)	0.983(690)	0.979(17020)	non tumor-specific	exon_skip	yes
UNC13C_LS001	chr15:53978927|54012648:+	UNC13C	unc-13 homolog C	protein coding gene	no	ENST00000647821.1	3.812	0.445	0.000	0.007(67)	0.009(6)	0(0)	non tumor-specific	nAS	yes
UN_RRP12_LS0048	chr10:97401368|97409662:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	.	0.671	0.125	0.000	0.007(70)	0.016(11)	0(0)	non tumor-specific	nAS	no
ADCY4_LS036	chr14:24330018|24331018:-	ADCY4	adenylate cyclase 4	protein coding gene	no	ENST00000557056.5;ENST00000557056.5;ENST00000557056.5	0.208	0.013	0.865	0.007(67)	0.017(12)	0.314(5462)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IGLC3_UP_LS0012	chr22:22432464|22904990:+	IGLC3	immunoglobulin lambda constant 3 (Kern-Oz+ marker)	no	no	.	269.532	1.703	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
NTAN1_LS021	chr16:15048099|15055891:-	NTAN1	N-terminal asparagine amidase	protein coding gene	no	ENST00000287706.7;ENST00000566419.1	5.683	4.849	15.062	0.951(9115)	0.959(673)	0.975(16944)	non tumor-specific	exon_skip	yes
C6orf203_LS008	chr6:107028797|107030025:+	C6orf203	mitochondrial transcription rescue factor 1	protein coding gene	no	ENST00000625458.1	1.848	1.504	0.861	0.505(4839)	0.567(398)	0.369(6409)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NOMO2_LS0167	chr16:18426651|18506972:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	51.989	4.705	0.000	0.021(201)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SNX30_LS0023	chr9:112866567|112868784:+	SNX30	sorting nexin 33	protein coding gene	no	.	1.753	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GSTM5_LS0009	chr1:109716489|109717337:+	GSTM5	glutathione S-transferase mu 5	protein coding gene	no	.	0.507	0.057	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
C20orf204_LS002	chr20:64036326|64037927:+	C20orf204	chromosome 20 open reading frame 204	protein coding gene	no	ENST00000636176.1	7.316	0.113	0.919	0.051(491)	0.001(1)	0.315(5481)	non tumor-specific	nAS	yes
SHF_LS006	chr15:45168133|45175219:-	SHF	Src homology 2 domain containing F	protein coding gene	no	ENST00000560734.5;ENST00000560734.5	0.996	0.646	3.023	0.846(8109)	0.919(645)	0.841(14612)	non tumor-specific	alt_3prime;exon_skip	yes
C21orf62_LS004	chr21:32794485|32813592:-	C21orf62	chromosome 21 open reading frame 62	protein coding gene	no	ENST00000487113.1	0.323	0.237	1.074	0.129(1234)	0.238(167)	0.096(1666)	non tumor-specific	exon_skip	yes
PREX1_LS013	chr20:48642489|48644409:-	PREX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein coding gene	no	ENST00000482556.5;ENST00000371941.3	34.348	18.588	22.338	0.952(9118)	0.979(687)	0.977(16988)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DIAPH1_LS0166	chr5:141573781|141573818:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	2.665	0.827	0.000	0.006(57)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_FAM157C_LS0113	chr16:90169211|90169261:+	FAM157C	family with sequence similarity 157 member C	lncRNA gene	no	.	6.507	1.044	0.000	0.06(572)	0.03(21)	0(0)	non tumor-specific	nAS	no
UN_MT-TQ_UP_LS0140	chrM:2513|5327:-	MT-TQ	mitochondrially encoded tRNA-Gln (CAA/G)	small non-coding RNA gene	no	.	259.992	61.563	0.000	0.008(72)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ZNF385A_LS0044	chr12:54369828|54369935:+	ZNF385A	zinc finger protein 385A	protein coding gene	no	.	7.215	1.141	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
TEP1_LS008	chr14:20371314|20371489:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000553365.5;ENST00000262715.9;ENST00000555008.5;ENST00000555727.5;ENST00000556935.5;ENST00000553984.1	15.211	8.946	21.427	0.97(9295)	0.991(696)	0.978(16997)	non tumor-specific	nAS	yes
UN_WDR62_LS0040	chr19:36099617|36101214:+	WDR62	WD repeat domain 62	protein coding gene	no	.	2.545	0.030	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
COL25A1_LS035	chr4:108896711|108899154:-	COL25A1	collagen type XXV alpha 1 chain	protein coding gene	no	ENST00000642955.1;ENST00000610288.4;ENST00000622134.4;ENST00000494183.5;ENST00000399132.5;ENST00000399127.5;ENST00000399126.1	4.358	0.815	1.414	0.074(705)	0.13(91)	0.485(8429)	non tumor-specific	exon_skip	yes
UN_HERC6_LS0038	chr4:88428741|88431162:+	HERC6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein coding gene	no	.	5.198	0.325	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
GBP3_LS005	chr1:89009140|89014083:-	GBP3	guanylate binding protein 3	protein coding gene	no	.;.	2.863	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC02353_UP_LS0013	chr4:32158081|32193759:+	LINC02353	long intergenic non-protein coding RNA 2353	lncRNA gene	no	.	3.128	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FXYD5_LS0007	chr19:35160801|35163029:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	.	35.234	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC024559.2_LS005	chr3:194078468|194080125:+	AC024559.2	-	lncRNA gene	no	ENST00000615240.1	0.000	0.000	0.787	0(0)	0(0)	0.001(22)	non tumor-specific	nAS	yes
UN_CROCCP2_LS0067	chr1:16635168|16644511:-	CROCCP2	CROCC pseudogene 2	pseudogene	no	.	0.939	0.075	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PCNX4_LS0006	chr14:60102009|60107586:+	PCNX4	pecanex 4	protein coding gene	no	.	3.093	0.199	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
INSYN2B_LS002	chr5:169881442|169882553:-	INSYN2B	inhibitory synaptic factor family member 2B	protein coding gene	no	ENST00000377365.3	3.635	1.335	1.691	0.159(1521)	0.303(213)	0.309(5369)	non tumor-specific	exon_skip	yes
UN_PIP4P2_LS0007	chr8:91024366|91026045:-	PIP4P2	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein coding gene	no	.	1.451	0.052	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC47A1P2_LS003	chr17:19629685|19630667:+	SLC47A1P2	SLC47A1 pseudogene 2	pseudogene	no	ENST00000452153.4	1.175	0.288	1.155	0.142(1358)	0.123(86)	0.367(6376)	non tumor-specific	nAS	yes
GUSB_LS035	chr7:65980409|65981851:-	GUSB	glucuronidase beta	protein coding gene	no	ENST00000476486.5	0.091	0.674	0.670	0.806(7725)	0.852(598)	0.108(1869)	non tumor-specific	alt_3prime;alt_5prime	yes
ITGA8_LS019	chr10:15644221|15646846:-	ITGA8	integrin subunit alpha 8	protein coding gene	no	ENST00000378076.3	5.256	8.359	4.068	0.368(3530)	0.788(553)	0.778(13529)	non tumor-specific	nAS	yes
CLTA_LS002	chr9:36191273|36197551:+	CLTA	clathrin light chain A	protein coding gene	no	ENST00000433436.6;ENST00000538225.5;ENST00000345519.9;ENST00000464497.5;ENST00000470744.5;ENST00000242285.10;ENST00000396603.6;ENST00000493185.2	164.427	67.898	242.721	0.921(8821)	0.916(643)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EPM2A_LS024	chr6:145721155|145735198:-	EPM2A	EPM2A glucan phosphatase, laforin	protein coding gene	no	ENST00000639049.1	0.487	0.240	0.870	0.045(431)	0.1(70)	0.389(6759)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
C4B_LS031	chr6:32029061|32029167:+	C4B	complement C4B (Chido blood group)	protein coding gene	no	ENST00000435363.7;ENST00000425700.3;ENST00000647698.1;ENST00000648821.1	126.745	141.644	20.088	0.924(8857)	0.977(686)	0.912(15860)	non tumor-specific	alt_3prime	yes
UN_CHD9_LS0028	chr16:53081808|53121300:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	2.342	0.144	0.000	0.011(107)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SBNO1_LS016	chr12:123321732|123323680:-	SBNO1	strawberry notch homolog 1	protein coding gene	no	ENST00000420886.6;ENST00000267176.8;ENST00000602398.2	19.129	11.817	8.109	0.927(8885)	0.969(680)	0.966(16796)	non tumor-specific	exon_skip	yes
UN_HSPE1P1_UP_LS0023	chr20:40597938|40605460:-	HSPE1P1	heat shock protein family E (Hsp10) member 1 pseudogene 1	pseudogene	no	.	2.516	0.039	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	nAS	no
MGAT5_LS019	chr2:134341759|134344930:+	MGAT5	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase	protein coding gene	no	ENST00000409645.5;ENST00000281923.3	18.963	16.583	7.113	0.889(8519)	0.916(643)	0.948(16476)	non tumor-specific	exon_skip	yes
AC012358.3_LS026	chr2:55329713|55339503:+	AC012358.3	-	lncRNA gene	no	ENST00000599352.5	1.540	0.188	0.706	0.03(291)	0.036(25)	0.197(3423)	non tumor-specific	nAS	yes
AC018730.1_LS002	chr2:104865832|104866642:-	AC018730.1	-	lncRNA gene	no	ENST00000454183.1	0.314	0.091	0.937	0.011(110)	0.09(63)	0.02(354)	non tumor-specific	nAS	yes
UN_CNPPD1_LS0030	chr2:219172750|219172776:+	CNPPD1	cyclin Pas1/PHO80 domain containing 1	protein coding gene	no	.	4.279	0.334	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC100756.3_LS002	chr15:23328158|23328812:-	AC100756.3	-	pseudogene	no	ENST00000618455.4	2.930	0.399	0.485	0.01(95)	0.001(1)	0(6)	non tumor-specific	nAS	yes
CAMTA2_LS008	chr17:4969337|4969630:-	CAMTA2	calmodulin binding transcription activator 2	protein coding gene	no	ENST00000574951.5;ENST00000381311.9;ENST00000574951.5;ENST00000381311.9;ENST00000574951.5;ENST00000381311.9	40.093	30.374	63.415	0.967(9267)	0.984(691)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LDLRAD4_LS0081	chr18:13542985|13543315:+	LDLRAD4	low density lipoprotein receptor class A domain containing 4	protein coding gene	no	.	5.598	0.173	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	no
MFN2_LS012	chr1:11982114|11989165:+	MFN2	mitofusin 2	protein coding gene	no	ENST00000490079.5;ENST00000235329.9;ENST00000497302.1;ENST00000490079.5;ENST00000235329.9;ENST00000497302.1	42.081	40.567	51.097	0.973(9327)	0.99(695)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CIRBP_LS0037	chr19:1271409|1271438:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	.	12.348	1.344	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BX571818.1_LS0012	chr1:206044988|206051853:+	BX571818.1	-	pseudogene	no	.	1.467	0.163	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RALGAPA2_LS0034	chr20:20511321|20512513:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	.	6.944	1.892	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
CU633906.2_LS007	chr21:6329607|6354358:+	CU633906.2	-	lncRNA gene	no	ENST00000624576.3	0.000	0.000	0.531	0.011(107)	0.014(10)	0(6)	non tumor-specific	nAS	yes
AC005699.1_LS007	chr4:11770475|11771705:+	AC005699.1	-	lncRNA gene	no	ENST00000508998.5	0.833	0.000	0.631	0.001(10)	0(0)	0.007(127)	non tumor-specific	nAS	yes
AC024475.1_LS001	chr11:46116726|46116863:+	AC024475.1	-	lncRNA gene	no	ENST00000528480.1	0.034	0.005	0.707	0.071(678)	0.066(46)	0.006(108)	non tumor-specific	nAS	yes
SYNE1_LS087	chr6:152325302|152325958:-	SYNE1	spectrin repeat containing nuclear envelope protein 1	protein coding gene	no	ENST00000367255.9;ENST00000423061.5;ENST00000490135.6;ENST00000448038.2	2.992	6.860	6.755	0.424(4060)	0.744(522)	0.922(16028)	non tumor-specific	nAS	yes
UN_NEK1_LS0026	chr4:169562196|169575456:-	NEK1	NIMA related kinase 1	protein coding gene	no	.	0.756	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
WDR91_LS002	chr7:135187169|135188433:-	WDR91	WD repeat domain 91	protein coding gene	no	ENST00000423565.5;ENST00000354475.4;ENST00000466182.5	33.951	17.057	28.488	0.972(9313)	0.994(698)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GOLGA8B_LS006	chr15:34528750|34529018:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	ENST00000342314.9;ENST00000438958.2;ENST00000569100.5;ENST00000484716.5;ENST00000568555.1	33.198	16.200	1.362	0.927(8886)	0.906(636)	0.622(10811)	non tumor-specific	nAS	yes
ZNF385B_LS019	chr2:179544969|179562399:-	ZNF385B	zinc finger protein 385B	protein coding gene	no	ENST00000336917.9;ENST00000469551.5	1.532	1.883	1.745	0.241(2311)	0.53(372)	0.201(3496)	non tumor-specific	exon_skip	yes
RBFADN_LS001	chr18:80047425|80048114:+	RBFADN	RBFA downstream neighbor	lncRNA gene	no	ENST00000562391.5	0.889	0.755	2.796	0.266(2552)	0.256(180)	0.88(15294)	non tumor-specific	alt_3prime;alt_5prime	yes
PDE1B_LS015	chr12:54573248|54573355:+	PDE1B	phosphodiesterase 1B	protein coding gene	no	ENST00000243052.7;ENST00000548855.5;ENST00000550285.5;ENST00000538346.5;ENST00000394277.7;ENST00000550620.1;ENST00000542335.5	6.230	10.783	15.731	0.602(5763)	0.829(582)	0.946(16440)	non tumor-specific	nAS	yes
KANK4_LS002	chr1:62247672|62253067:-	KANK4	KN motif and ankyrin repeat domains 4	protein coding gene	no	ENST00000317477.8;ENST00000371153.8;ENST00000371150.5;ENST00000354381.3	3.818	2.241	1.976	0.412(3944)	0.679(477)	0.548(9519)	non tumor-specific	exon_skip	yes
UN_TGFBR2_LS0064	chr3:30693573|30693658:-	TGFBR2	transforming growth factor beta receptor 2	protein coding gene	yes	.	1.553	0.191	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
CTDSPL2_LS027	chr15:44521406|44524109:+	CTDSPL2	CTD small phosphatase like 2	protein coding gene	no	ENST00000260327.8;ENST00000558966.5;ENST00000558373.5;ENST00000559738.1;ENST00000559175.1	21.453	11.656	11.005	0.946(9060)	0.969(680)	0.969(16851)	non tumor-specific	exon_skip	yes
TNFAIP8_LS010	chr5:119356121|119392816:+	TNFAIP8	TNF alpha induced protein 8	protein coding gene	no	ENST00000504771.2;ENST00000503646.1	1.320	0.991	4.754	0.867(8303)	0.963(676)	0.787(13686)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC30A6_LS0016	chr2:32197826|32197966:+	SLC30A6	solute carrier family 30 member 6	protein coding gene	no	.	2.715	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
PER1_LS042	chr17:8150845|8152337:-	PER1	post-GPI attachment to proteins phospholipase 3	protein coding gene	no	ENST00000317276.8;ENST00000582719.5;ENST00000579065.1	1.159	2.784	18.397	0.804(7707)	0.887(623)	0.971(16873)	non tumor-specific	alt_3prime;intron_retention	yes
UN_TMEM255B_LS0021	chr13:113800063|113800827:+	TMEM255B	transmembrane protein 255B	protein coding gene	no	.	2.987	0.669	0.000	0.019(181)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_ANO5_LS0003	chr11:21799988|21842805:+	ANO5	anoctamin 5	protein coding gene	no	.	1.586	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ANXA9_LS010	chr1:150986661|150987872:+	ANXA9	annexin A9	protein coding gene	no	ENST00000368947.8	21.816	21.974	2.740	0.618(5918)	0.744(522)	0.531(9222)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_CD59_LS0066	chr11:33720729|33722379:-	CD59	CD59 molecule (CD59 blood group)	protein coding gene	no	.	0.117	0.013	0.000	0.007(63)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_ACLY_LS0041	chr17:41907572|41908070:-	ACLY	ATP citrate lyase	protein coding gene	no	.	1.906	0.919	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
RNF139_LS002	chr8:124483407|124485831:+	RNF139	ring finger protein 139	protein coding gene	no	ENST00000517684.2	0.131	0.079	0.674	0.453(4342)	0.503(353)	0.179(3119)	non tumor-specific	exon_skip	yes
CATSPERB_LS013	chr14:91639250|91659837:-	CATSPERB	cation channel sperm associated auxiliary subunit beta	protein coding gene	no	ENST00000256343.7	1.423	0.751	0.918	0.04(380)	0.019(13)	0.258(4490)	non tumor-specific	exon_skip	yes
UN_CASC19_LS0031	chr8:127169117|127187785:-	CASC19	cancer susceptibility 19	lncRNA gene	no	.	1.412	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
RGS3_LS051	chr9:113581658|113582072:+	RGS3	regulator of G protein signaling 3	protein coding gene	no	ENST00000471324.6	0.389	0.198	0.778	0.154(1480)	0.218(153)	0.169(2944)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DPP3_LS029	chr11:66497477|66504612:+	DPP3	dipeptidyl peptidase 3	protein coding gene	no	ENST00000531863.5;ENST00000532677.5;ENST00000541961.5;ENST00000530165.5	83.365	34.978	21.633	0.991(9498)	0.997(700)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
ABCC8_LS034	chr11:17412746|17413394:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000644772.1;ENST00000643562.1;ENST00000643878.1;ENST00000389817.7;ENST00000302539.9;ENST00000646592.1;ENST00000646993.1;ENST00000644484.1;ENST00000642579.1;ENST00000646902.1;ENST00000642611.1;ENST00000642271.1;ENST00000647086.1;ENST00000643260.1;ENST00000647015.1;ENST00000644757.1;ENST00000644675.1;ENST00000642902.1;ENST00000645760.1;ENST00000646207.1;ENST00000645884.1;ENST00000645076.1;ENST00000647158.1;ENST00000646276.1;ENST00000645744.1;ENST00000647013.1;ENST00000527905.5;ENST00000644447.1;ENST00000644542.1;ENST00000526921.5;ENST00000529967.5;ENST00000644472.1;ENST00000531911.1	3.362	1.485	4.638	0.222(2124)	0.366(257)	0.648(11261)	non tumor-specific	alt_5prime	yes
THADA_LS059	chr2:43592416|43592844:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000403856.1	0.173	0.084	0.721	0.205(1960)	0.208(146)	0.263(4576)	non tumor-specific	exon_skip	yes
UN_PSME2_UP_LS0006	chr14:24171192|24171249:-	PSME2	proteasome activator subunit 2	protein coding gene	no	.	0.999	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTMR4_LS007	chr17:58504220|58504303:-	MTMR4	myotubularin related protein 4	protein coding gene	no	ENST00000323456.9	20.870	14.726	16.498	0.944(9046)	0.98(688)	0.976(16957)	non tumor-specific	exon_skip	yes
MIR4435-2HG_LS018	chr2:111344237|111494885:-	MIR4435-2HG	MIR4435-2 host gene	lncRNA gene	no	ENST00000431385.5	0.221	0.138	0.952	0.389(3725)	0.276(194)	0.417(7240)	non tumor-specific	nAS	yes
UN_SUGT1P1_LS0002	chr9:33504605|33508363:-	SUGT1P1	SUGT1 pseudogene 1	pseudogene	no	.	2.200	0.561	0.000	0.003(31)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_GOLGA2_LS0003	chr9:128256210|128256295:+	GOLGA2	golgin A2	protein coding gene	no	.	1.690	0.380	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNU6-403P_UP_LS0001	chr1:221840453|221913762:-	RNU6-403P	RNA, U6 small nuclear 403, pseudogene	small non-coding RNA gene	no	.	4.049	0.381	0.000	0.095(907)	0.061(43)	0(0)	non tumor-specific	nAS	no
CCDC30_LS028	chr1:42566475|42577020:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000477155.5;ENST00000340612.5;ENST00000428554.6;ENST00000507855.5;ENST00000509712.6;ENST00000471390.5;ENST00000342022.8;ENST00000514642.1	1.558	2.092	2.799	0.438(4193)	0.594(417)	0.849(14757)	non tumor-specific	exon_skip	yes
UN_RF00096_UP_LS0072	chr2:185425507|185434097:+	RF00096	-	small non-coding RNA gene	no	.	2.753	0.745	0.000	0.1(962)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_TPD52L2_LS0059	chr20:63890466|63891121:-	TPD52L2	TPD52 like 2	protein coding gene	no	.	2.885	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CIRBP-AS1_LS001	chr19:1268390|1269825:-	CIRBP-AS1	CIRBP antisense RNA 1	lncRNA gene	no	ENST00000585832.2	2.815	1.101	1.254	0.76(7280)	0.687(482)	0.621(10791)	non tumor-specific	nAS	yes
UN_ANKRD46_LS0018	chr8:100559150|100559532:-	ANKRD46	ankyrin repeat domain 46	protein coding gene	no	.	0.563	0.009	0.000	0.016(149)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
LDB2_LS027	chr4:16750927|16752407:-	LDB2	LIM domain binding 2	protein coding gene	no	ENST00000504189.1	0.752	0.842	0.693	0(1)	0.001(1)	0.028(490)	non tumor-specific	nAS	yes
UN_LINC00578_LS0080	chr3:177629555|177651290:+	LINC00578	long intergenic non-protein coding RNA 578	lncRNA gene	no	.	4.367	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKAA2_LS0001	chr1:56645481|56645729:+	PRKAA2	protein kinase AMP-activated catalytic subunit alpha 2	protein coding gene	yes	.	1.505	0.320	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NONO_UP_LS0007	chrX:71266727|71272282:+	NONO	non-POU domain containing octamer binding	protein coding gene	no	.	2.947	0.679	0.000	0.022(215)	0.016(11)	0(0)	non tumor-specific	nAS	no
AC087392.1_LS001	chr17:909932|910694:+	AC087392.1	-	lncRNA gene	no	ENST00000576252.1	2.229	0.682	1.789	0.343(3284)	0.496(348)	0.387(6731)	non tumor-specific	nAS	yes
UN_AC024475.3_UP_LS0011	chr11:46251987|46428884:-	AC024475.3	-	lncRNA gene	no	.	2.059	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRKCE_LS005	chr2:45675683|45676084:+	PRKCE	protein kinase C epsilon	protein coding gene	yes	ENST00000476675.5	0.370	0.078	0.680	0.068(647)	0.081(57)	0.049(847)	non tumor-specific	alt_5prime	yes
C3orf58_LS009	chr3:143978522|143985543:+	C3orf58	divergent protein kinase domain 2A	protein coding gene	no	ENST00000491798.1	0.304	0.122	0.675	0.044(419)	0.036(25)	0.026(457)	non tumor-specific	exon_skip	yes
UN_AGAP1_LS0039	chr2:235908906|235909078:+	AGAP1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	2.669	0.342	0.000	0.046(442)	0.004(3)	0(0)	non tumor-specific	nAS	no
CDKAL1_LS010	chr6:20548705|20649293:+	CDKAL1	CDK5 regulatory subunit associated protein 1 like 1	protein coding gene	no	ENST00000274695.8;ENST00000378610.1	15.773	9.066	7.450	0.942(9030)	0.98(688)	0.965(16772)	non tumor-specific	exon_skip	yes
NSD1_LS017	chr5:177238507|177239756:+	NSD1	nuclear receptor binding SET domain protein 1	protein coding gene	yes	ENST00000354179.8;ENST00000439151.6;ENST00000347982.8	10.803	7.417	7.461	0.89(8523)	0.936(657)	0.963(16737)	non tumor-specific	exon_skip	yes
IQSEC3_LS003	chr12:141285|157025:+	IQSEC3	IQ motif and Sec7 domain ArfGEF 3	protein coding gene	no	ENST00000538872.5;ENST00000382841.2	6.896	6.685	2.879	0.23(2200)	0.45(316)	0.721(12539)	non tumor-specific	nAS	yes
SLC26A2_LS001	chr5:149960979|149961993:+	SLC26A2	solute carrier family 26 member 2	protein coding gene	no	ENST00000433184.1	0.018	0.124	0.666	0.058(553)	0.132(93)	0.014(248)	non tumor-specific	exon_skip	yes
UN_AC008543.1_LS0012	chr19:11653007|11654053:+	AC008543.1	-	lncRNA gene	no	.	0.993	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF568_LS014	chr19:36974466|36976327:+	ZNF568	zinc finger protein 568	protein coding gene	no	ENST00000588596.1	0.908	0.311	1.085	0.131(1255)	0.175(123)	0.562(9765)	non tumor-specific	alt_3prime;exon_skip	yes
RAC1_LS010	chr7:6398718|6400126:+	RAC1	ribonuclease A family member 1, pancreatic	protein coding gene	yes	ENST00000356142.4	36.202	14.566	16.283	0.959(9188)	0.937(658)	0.93(16163)	non tumor-specific	alt_5prime;exon_skip	yes
NCOA3_LS022	chr20:47639822|47639925:+	NCOA3	nuclear receptor coactivator 3	protein coding gene	yes	ENST00000372004.7;ENST00000371998.7;ENST00000371997.3	23.144	13.455	11.421	0.899(8612)	0.962(675)	0.961(16712)	non tumor-specific	alt_3prime	yes
ZCCHC7_LS014	chr9:37284328|37302188:+	ZCCHC7	zinc finger CCHC-type containing 7	protein coding gene	no	ENST00000463625.6	0.132	0.195	0.750	0.368(3530)	0.37(260)	0.208(3615)	non tumor-specific	nAS	yes
F10_LS002	chr13:113129612|113129994:+	F10	coagulation factor X	protein coding gene	no	ENST00000483537.1	0.260	0.056	0.671	0.044(421)	0.083(58)	0.09(1571)	non tumor-specific	nAS	yes
POMC_LS007	chr2:25164792|25168498:-	POMC	proopiomelanocortin	protein coding gene	no	ENST00000395826.6;ENST00000395826.6	6.676	1.167	4.877	0.212(2033)	0.218(153)	0.55(9567)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ADGRA2_LS0031	chr8:37830923|37831461:+	ADGRA2	adhesion G protein-coupled receptor A2	protein coding gene	no	.	1.060	0.002	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ATAD2B_LS0041	chr2:23857503|23864809:-	ATAD2B	ATPase family AAA domain containing 2B	protein coding gene	no	.	5.535	0.075	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MYH8_LS009	chr17:10396718|10396803:-	MYH8	myosin heavy chain 8	protein coding gene	no	ENST00000403437.2	11.946	0.604	2.345	0.028(265)	0.028(20)	0.066(1151)	non tumor-specific	nAS	yes
UN_CEP164_LS0045	chr11:117392627|117393009:+	CEP164	centrosomal protein 164	protein coding gene	no	.	3.134	0.222	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_UBC_LS0847	chr12:124913194|124913295:+	UBC	ubiquitin C	protein coding gene	no	.	47.873	13.933	0.000	0.014(134)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1126P_UP_LS0008	chr7:55773740|55778813:+	RNU6-1126P	RNA, U6 small nuclear 1126, pseudogene	small non-coding RNA gene	no	.	2.283	0.945	0.000	0.021(203)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC026801.1_UP_LS0005	chr5:34900493|34908765:-	AC026801.1	-	pseudogene	no	.	1.289	0.467	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_COLQ_LS0015	chr3:15477192|15478977:-	COLQ	collagen like tail subunit of asymmetric acetylcholinesterase	protein coding gene	no	.	0.949	0.101	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
C6orf118_LS007	chr6:165290067|165293413:-	C6orf118	chromosome 6 open reading frame 118	protein coding gene	no	ENST00000230301.8	5.250	4.251	1.707	0.095(907)	0.138(97)	0.159(2763)	non tumor-specific	alt_5prime	yes
DENND4A_LS011	chr15:65668123|65669779:-	DENND4A	DENN domain containing 4A	protein coding gene	no	ENST00000443035.7;ENST00000431932.6;ENST00000635620.1	18.937	13.707	13.254	0.939(8998)	0.991(696)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_AC117457.1_LS0009	chr3:178526625|178535713:-	AC117457.1	-	protein coding gene	no	.	1.977	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STON1-GTF2A1L_LS0010	chr2:48549332|48580587:+	STON1-GTF2A1L	STON1-GTF2A1L readthrough	protein coding gene	no	.	1.211	0.065	0.000	0.009(91)	0.001(1)	0(0)	non tumor-specific	nAS	no
GOLGA6L11P_LS004	chrY:24170981|24171638:+	GOLGA6L11P	golgin A6 family like 11, pseudogene	pseudogene	no	ENST00000417252.2	0.312	0.000	0.588	0(2)	0(0)	0.001(25)	non tumor-specific	nAS	yes
UN_MTCYBP43_UP_LS0022	chr4:31961173|31961535:-	MTCYBP43	MT-CYB pseudogene 43	pseudogene	no	.	3.191	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RBM38_LS0008	chr20:57391724|57407565:-	RBM38	RNA binding motif protein 38	protein coding gene	yes	.	2.417	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADD1_LS0037	chr4:2928692|2928735:-	ADD1	adducin 1	protein coding gene	no	.	4.448	0.844	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
ETFA_LS021	chr15:76287945|76292431:-	ETFA	electron transfer flavoprotein subunit alpha	protein coding gene	no	ENST00000557943.5;ENST00000433983.6;ENST00000267950.12;ENST00000560726.5;ENST00000559973.5;ENST00000560595.5;ENST00000560899.5;ENST00000559075.5;ENST00000560044.5;ENST00000559758.5;ENST00000560345.5;ENST00000559386.1;ENST00000560309.5;ENST00000561092.1	144.233	133.690	146.840	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
MACROD1_LS019	chr11:64151355|64152292:-	MACROD1	mono-ADP ribosylhydrolase 1	protein coding gene	yes	ENST00000255681.6;ENST00000545464.5;ENST00000542359.5;ENST00000538595.1	99.044	68.865	59.375	0.995(9530)	0.997(700)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip	yes
MCM7_LS021	chr7:100100093|100101200:-	MCM7	minichromosome maintenance complex component 7	protein coding gene	no	ENST00000465688.1	0.125	0.079	0.655	0.127(1215)	0.058(41)	0.087(1511)	non tumor-specific	alt_5prime	yes
RIPK3_LS006	chr14:24338040|24338249:-	RIPK3	receptor interacting serine/threonine kinase 3	protein coding gene	no	ENST00000216274.9	7.998	8.679	6.479	0.812(7777)	0.903(634)	0.884(15363)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LMX1A_LS004	chr1:165208132|165210699:-	LMX1A	LIM homeobox transcription factor 1 alpha	protein coding gene	no	ENST00000342310.7;ENST00000294816.6;ENST00000489443.2;ENST00000367893.4	4.659	0.453	0.891	0.035(335)	0.057(40)	0.211(3663)	non tumor-specific	nAS	yes
UN_HNRNPUL2_LS0006	chr11:62714131|62714413:-	HNRNPUL2	heterogeneous nuclear ribonucleoprotein U like 2	protein coding gene	no	.	8.581	3.043	0.000	0.025(238)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_PLA1A_LS0011	chr3:119614286|119616012:+	PLA1A	phospholipase A1 member A	protein coding gene	no	.	2.284	0.064	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SCML4_LS004	chr6:107720993|107743942:-	SCML4	Scm polycomb group protein like 4	protein coding gene	no	ENST00000479803.1	0.057	0.007	0.719	0.073(696)	0.087(61)	0.014(246)	non tumor-specific	nAS	yes
AC007879.3_LS003	chr2:207235610|207235773:-	AC007879.3	-	lncRNA gene	no	ENST00000417096.5;ENST00000448786.1	0.351	0.061	0.717	0.015(146)	0.003(2)	0.038(668)	non tumor-specific	nAS	yes
UN_RF00409_UP_LS0007	chrX:15647338|15703600:+	RF00409	-	small non-coding RNA gene	no	.	3.400	0.153	0.000	0.025(237)	0.004(3)	0(0)	non tumor-specific	nAS	no
SMYD2_LS001	chr1:214281427|214305187:+	SMYD2	SET and MYND domain containing 2	protein coding gene	no	ENST00000491455.5;ENST00000471645.5;ENST00000366957.9	31.784	17.261	17.535	0.96(9200)	0.953(669)	0.977(16978)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ALOX15P2_LS0002	chr9:92920035|92920140:+	ALOX15P2	arachidonate 15-lipoxygenase pseudogene 2	pseudogene	no	.	3.790	0.472	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WWC3_LS0008	chrX:10078875|10079733:+	WWC3	WWC family member 3	protein coding gene	no	.	2.992	0.880	0.000	0.011(103)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL358472.7_LS0059	chr1:153960373|153960652:+	AL358472.7	-	protein coding gene	no	.	1.938	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOPX_UP_LS0013	chr4:56687912|56693719:-	HOPX	HOP homeobox	protein coding gene	yes	.	3.166	0.229	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
OSTF1_LS007	chr9:75127619|75130578:+	OSTF1	osteoclast stimulating factor 1	protein coding gene	no	ENST00000346234.6	169.121	116.632	81.510	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
POTEJ_LS002	chr2:130616904|130617065:+	POTEJ	POTE ankyrin domain family member J	protein coding gene	no	ENST00000409602.1	1.115	0.180	0.682	0.031(293)	0.024(17)	0.001(14)	non tumor-specific	nAS	yes
MLANA_LS010	chr9:5897653|5898081:+	MLANA	melan-A	protein coding gene	yes	ENST00000490518.1	4.434	0.177	0.784	0.055(530)	0.001(1)	0.052(912)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_KIFC3_LS0038	chr16:57772288|57784924:-	KIFC3	kinesin family member C3	protein coding gene	no	.	2.309	1.089	0.000	0.016(149)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_DOT1L_LS0032	chr19:2220203|2222013:-	DOT1L	DOT1 like histone lysine methyltransferase	protein coding gene	no	.	1.217	0.060	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRAMD2A_LS015	chr15:72168996|72169417:-	GRAMD2A	GRAM domain containing 2A	protein coding gene	no	ENST00000562288.1	0.272	0.062	0.680	0.023(221)	0.058(41)	0.035(601)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
PDCD6_LS017	chr5:306760|311293:+	PDCD6	programmed cell death 6	protein coding gene	no	ENST00000264933.8;ENST00000614778.4;ENST00000628729.2;ENST00000505526.1;ENST00000511482.1	262.875	111.311	94.381	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF780B_LS002	chr19:40036626|40047406:-	ZNF780B	zinc finger protein 780B	protein coding gene	no	ENST00000221355.10;ENST00000598845.5	0.617	0.474	1.080	0.473(4529)	0.604(424)	0.599(10418)	non tumor-specific	alt_5prime;exon_skip	yes
ACSM5P1_LS010	chr16:20602441|20604262:-	ACSM5P1	acyl-CoA synthetase medium chain family member 5 pseudogene 1	pseudogene	no	ENST00000566754.1	0.793	0.966	0.632	0.003(29)	0.01(7)	0.006(99)	non tumor-specific	nAS	yes
PDGFC_LS009	chr4:156772893|156774372:-	PDGFC	platelet derived growth factor C	protein coding gene	no	ENST00000510982.5	0.356	0.109	0.671	0.151(1447)	0.125(88)	0.054(939)	non tumor-specific	alt_5prime	yes
UN_ARHGEF6_LS0018	chrX:136737464|136737592:-	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor 6	protein coding gene	no	.	2.219	0.398	0.000	0.022(211)	0.024(17)	0(0)	non tumor-specific	exon_skip;intron_retention	no
NKAIN3_LS001	chr8:62248878|62248973:+	NKAIN3	sodium/potassium transporting ATPase interacting 3	protein coding gene	no	ENST00000519049.5	1.145	0.000	0.743	0(3)	0(0)	0(1)	non tumor-specific	nAS	yes
UN_ZSCAN12_LS0005	chr6:28382605|28383203:-	ZSCAN12	zinc finger and SCAN domain containing 12	protein coding gene	no	.	1.346	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SGSM2_LS0043	chr17:2365341|2367039:+	SGSM2	small G protein signaling modulator 2	protein coding gene	no	.	2.318	0.385	0.000	0.026(248)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
GBF1_LS015	chr10:102361120|102361718:+	GBF1	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein coding gene	no	ENST00000369983.3	34.005	25.454	24.507	0.952(9122)	0.984(691)	0.977(16974)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SRSF3_LS0021	chr6:36601785|36601971:+	SRSF3	serine and arginine rich splicing factor 3	protein coding gene	yes	.	29.370	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SYCP1_LS029	chr1:114946381|114947246:+	SYCP1	synaptonemal complex protein 1	protein coding gene	no	ENST00000369522.7;ENST00000455987.5;ENST00000618516.4;ENST00000369518.1	12.057	0.734	0.757	0.006(53)	0.003(2)	0.07(1210)	non tumor-specific	nAS	yes
UN_TAPBP_LS0104	chr6:33300446|33300751:+	TAPBP	TAP binding protein	protein coding gene	no	.	2.672	0.611	0.000	0.019(181)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_OTUB1_LS0088	chr11:63998061|63998102:+	OTUB1	OTU deubiquitinase, ubiquitin aldehyde binding 1	protein coding gene	no	.	40.725	2.726	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
MCTP1_LS030	chr5:94953319|95081426:-	MCTP1	multiple C2 and transmembrane domain containing 1	protein coding gene	no	ENST00000512425.5	0.122	0.065	0.707	0.213(2039)	0.333(234)	0.06(1042)	non tumor-specific	mutex_exons	yes
MTFR1_LS017	chr8:65707256|65707843:+	MTFR1	mitochondrial fission regulator 1	protein coding gene	no	ENST00000424808.6;ENST00000262146.8;ENST00000517944.5;ENST00000458689.2;ENST00000518800.5;ENST00000521247.6;ENST00000527155.5;ENST00000518352.1	27.436	17.897	15.973	0.993(9514)	0.996(699)	0.972(16890)	non tumor-specific	alt_3prime;alt_5prime	yes
CRLF1_LS006	chr19:18594107|18594247:-	CRLF1	cytokine receptor like factor 1	protein coding gene	no	ENST00000392386.7	10.699	4.169	22.250	0.608(5828)	0.731(513)	0.917(15941)	non tumor-specific	alt_3prime;exon_skip	yes
LRP1B_LS060	chr2:140769344|140770881:-	LRP1B	LDL receptor related protein 1B	protein coding gene	yes	ENST00000389484.7	2.926	0.909	1.183	0.068(650)	0.097(68)	0.239(4158)	non tumor-specific	nAS	yes
LFNG_LS003	chr7:2517944|2518548:+	LFNG	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein coding gene	no	ENST00000402045.5	0.022	0.124	0.808	0.054(516)	0.023(16)	0.145(2525)	non tumor-specific	intron_retention	yes
UN_TFF1_LS0006	chr21:42362446|42363282:+	TFF1	trefoil factor 1	protein coding gene	no	.	16.255	1.023	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
LAMTOR5-AS1_LS018	chr1:110413094|110414152:+	LAMTOR5-AS1	LAMTOR5 antisense RNA 1	lncRNA gene	no	ENST00000608719.5;ENST00000444238.6;ENST00000608635.5	0.000	0.000	0.840	0(1)	0(0)	0(8)	non tumor-specific	nAS	yes
SLTM_LS022	chr15:58899709|58901260:-	SLTM	SAFB like transcription modulator	protein coding gene	no	ENST00000559880.5	0.453	0.328	1.463	0.763(7313)	0.796(559)	0.719(12502)	non tumor-specific	alt_3prime	yes
ACTN1_LS046	chr14:68925672|68978952:-	ACTN1	actinin alpha 1	protein coding gene	no	ENST00000193403.10;ENST00000394419.8;ENST00000438964.6;ENST00000538545.6	20.147	22.581	102.598	0.983(9417)	0.99(695)	0.979(17018)	non tumor-specific	exon_skip	yes
PCDH15_LS002	chr10:53809546|53810547:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000615043.1	0.142	0.000	1.093	0(2)	0(0)	0(1)	non tumor-specific	nAS	yes
IL27RA_LS011	chr19:14050883|14051607:+	IL27RA	interleukin 27 receptor subunit alpha	protein coding gene	no	ENST00000263379.3	23.459	11.904	6.273	0.967(9265)	0.972(682)	0.959(16669)	non tumor-specific	nAS	yes
UN_MYO6_LS0031	chr6:75879945|75880043:+	MYO6	myosin VI	protein coding gene	no	.	14.479	0.147	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AL161908.1_LS0012	chr9:126609214|126610103:-	AL161908.1	-	lncRNA gene	no	.	1.836	1.653	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC52A3_LS006	chr20:766334|768297:-	SLC52A3	solute carrier family 52 member 3	protein coding gene	no	ENST00000488495.2	1.562	1.094	0.978	0.514(4921)	0.618(434)	0.3(5223)	non tumor-specific	alt_5prime	yes
YIPF1_LS013	chr1:53878402|53878642:-	YIPF1	Yip1 domain family member 1	protein coding gene	no	ENST00000464950.6;ENST00000371399.5;ENST00000072644.6;ENST00000469457.5;ENST00000480151.5;ENST00000465897.5;ENST00000472983.1;ENST00000464950.6;ENST00000371399.5;ENST00000072644.6;ENST00000469457.5;ENST00000480151.5;ENST00000465897.5;ENST00000472983.1	47.667	36.369	28.561	0.994(9526)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PHACTR2-AS1_LS001	chr6:143555230|143557531:-	PHACTR2-AS1	PHACTR2 antisense RNA 1	lncRNA gene	no	ENST00000450575.1	8.927	0.000	0.657	0.001(8)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_AHNAK_LS1006	chr11:62525637|62525800:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	18.028	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	intron_retention	no
CASC3_LS006	chr17:40141607|40161753:+	CASC3	CASC3 exon junction complex subunit	protein coding gene	no	ENST00000418132.7;ENST00000264645.11;ENST00000581849.1;ENST00000584997.1;ENST00000418132.7;ENST00000264645.11;ENST00000581849.1;ENST00000584997.1	15.890	10.476	89.080	0.982(9406)	0.99(695)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
NMD3_LS008	chr3:161221724|161221994:+	NMD3	NMD3 ribosome export adaptor	protein coding gene	no	ENST00000463518.5	0.208	0.215	1.231	0.862(8259)	0.893(627)	0.631(10964)	non tumor-specific	alt_5prime;intron_retention	yes
UN_AMDHD2_LS0011	chr16:2527985|2528069:+	AMDHD2	amidohydrolase domain containing 2	protein coding gene	no	.	5.488	0.823	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_USP9Y_LS0035	chrY:12816344|12833688:+	USP9Y	ubiquitin specific peptidase 9 Y-linked	protein coding gene	no	.	1.587	0.102	0.000	0.009(90)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
OLFM1_LS002	chr9:135075802|135076812:+	OLFM1	olfactomedin 1	protein coding gene	no	ENST00000371799.8	0.101	0.061	0.669	0.03(287)	0.024(17)	0.046(798)	non tumor-specific	exon_skip	yes
HNMT_LS004	chr2:137964628|138000918:+	HNMT	histamine N-methyltransferase	protein coding gene	no	ENST00000485653.1	0.081	1.966	1.330	0.737(7057)	0.868(609)	0.552(9597)	non tumor-specific	alt_3prime;exon_skip	yes
ARL8A_LS002	chr1:202135220|202135459:-	ARL8A	ADP ribosylation factor like GTPase 8A	protein coding gene	no	ENST00000272217.6;ENST00000491358.1;ENST00000486225.1	162.026	85.606	105.440	0.999(9569)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FBXO7_LS0004	chr22:32475398|32483897:+	FBXO7	F-box protein 7	protein coding gene	no	.	2.856	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MSH5-SAPCD1_LS0011	chr6:31744581|31746460:+	MSH5-SAPCD1	MSH5-SAPCD1 readthrough (NMD candidate)	protein coding gene	no	.	1.542	0.232	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_INF2_LS0047	chr14:104713309|104713449:+	INF2	inverted formin 2	protein coding gene	no	.	12.036	3.948	0.000	0.032(308)	0.024(17)	0(0)	non tumor-specific	alt_3prime	no
UN_AC083899.1_LS0012	chr2:87150107|87156278:+	AC083899.1	-	pseudogene	no	.	3.699	0.000	0.617	0.002(15)	0(0)	0.009(158)	non tumor-specific	nAS	no
SEC24B_LS025	chr4:109530464|109531385:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	ENST00000504968.6;ENST00000399100.6;ENST00000265175.5	53.795	37.467	56.172	0.991(9492)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
TRIM3_LS008	chr11:6456175|6456576:-	TRIM3	tripartite motif containing 3	protein coding gene	yes	ENST00000529058.1	0.351	0.169	1.412	0.611(5851)	0.645(453)	0.725(12601)	non tumor-specific	alt_5prime	yes
DLEC1_LS010	chr3:38085447|38086241:+	DLEC1	DLEC1 cilia and flagella associated protein	protein coding gene	yes	ENST00000440294.6;ENST00000346219.7;ENST00000308059.10	1.171	0.594	1.370	0.062(592)	0.12(84)	0.471(8185)	non tumor-specific	exon_skip	yes
SIGIRR_LS025	chr11:408893|409868:-	SIGIRR	single Ig and TIR domain containing	protein coding gene	no	ENST00000431843.6;ENST00000397632.7;ENST00000332725.7;ENST00000531205.5;ENST00000528698.5;ENST00000530494.1;ENST00000530683.5;ENST00000431843.6;ENST00000397632.7;ENST00000332725.7;ENST00000531205.5;ENST00000528698.5;ENST00000530494.1;ENST00000530683.5	24.743	19.982	9.243	0.97(9296)	0.989(694)	0.934(16239)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
TECR_LS010	chr19:14545180|14562525:+	TECR	trans-2,3-enoyl-CoA reductase	protein coding gene	no	ENST00000598987.5	1.513	1.511	7.818	0.096(924)	0.154(108)	0.909(15806)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_VARS_LS0022	chr6:31780779|31780870:-	VARS	valyl-tRNA synthetase 1	protein coding gene	no	.	34.457	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_OBSCN_LS0182	chr1:228368552|228368722:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	1.493	0.098	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
HSD3BP3_LS002	chr1:119542959|119545230:+	HSD3BP3	hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 3	pseudogene	no	ENST00000514706.1	0.007	0.000	0.618	0(1)	0(0)	0.002(37)	non tumor-specific	nAS	yes
UN_PDS5B_LS0036	chr13:32687285|32694223:+	PDS5B	PDS5 cohesin associated factor B	protein coding gene	yes	.	1.682	0.154	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ABCA10_LS0011	chr17:69165083|69175406:-	ABCA10	ATP binding cassette subfamily A member 10	protein coding gene	no	.	1.417	0.352	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
ITGA1_LS006	chr5:52864851|52864971:+	ITGA1	integrin subunit alpha 1	protein coding gene	no	ENST00000282588.6;ENST00000514262.5;ENST00000513737.5	18.773	20.711	11.975	0.832(7969)	0.949(666)	0.903(15703)	non tumor-specific	nAS	yes
UN_AL136455.1_UP_LS0003	chr1:103651377|103750424:+	AL136455.1	-	pseudogene	no	.	2.901	1.178	0.000	0.049(473)	0.094(66)	0(0)	non tumor-specific	nAS	no
UN_NEB_LS0041	chr2:151536033|151540287:+	NEB	nebulin	protein coding gene	no	.	2.402	0.120	0.000	0.007(65)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_VPS4B_LS0002	chr18:63390085|63390119:+	VPS4B	vacuolar protein sorting 4 homolog B	protein coding gene	no	.	6.972	1.134	0.000	0.011(101)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC013356.4_LS001	chr15:40369036|40369271:-	AC013356.4	-	lncRNA gene	no	ENST00000558421.1	0.035	0.034	1.099	0.225(2155)	0.175(123)	0.136(2357)	non tumor-specific	nAS	yes
ZFPL1_LS011	chr11:65085384|65086720:+	ZFPL1	zinc finger protein like 1	protein coding gene	no	ENST00000530744.5	0.011	0.003	0.711	0.315(3020)	0.279(196)	0.048(838)	non tumor-specific	alt_5prime	yes
AKTIP_LS006	chr16:53494605|53494839:-	AKTIP	AKT interacting protein	protein coding gene	yes	ENST00000568022.5	0.212	0.031	0.798	0.096(919)	0.155(109)	0.368(6390)	non tumor-specific	exon_skip	yes
UN_CLYBL_LS0001	chr13:99606757|99657893:+	CLYBL	citramalyl-CoA lyase	protein coding gene	no	.	1.754	0.325	0.000	0.027(261)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_GSAP_LS0013	chr7:77326273|77326813:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	0.422	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
AC012309.1_LS003	chr19:37156355|37195881:-	AC012309.1	-	protein coding gene	no	ENST00000590245.5	0.024	0.013	0.764	0.071(676)	0.138(97)	0(1)	non tumor-specific	nAS	yes
RIF1_LS038	chr2:151466120|151468000:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000444746.6;ENST00000453091.6;ENST00000428287.6;ENST00000243326.9;ENST00000430328.6;ENST00000454583.6	17.434	9.463	14.844	0.93(8914)	0.98(688)	0.971(16884)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_BIRC6_LS0079	chr2:32510634|32513079:+	BIRC6	baculoviral IAP repeat containing 6	protein coding gene	no	.	1.027	0.148	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_DZIP1_LS0031	chr13:95643257|95643523:-	DZIP1	DAZ interacting zinc finger protein 1	protein coding gene	no	.	1.882	0.353	0.000	0.01(97)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_HLA-E_LS0184	chr6:30493008|30493267:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	6.138	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPRD2_LS0031	chr1:150470980|150471883:+	RPRD2	regulation of nuclear pre-mRNA domain containing 2	protein coding gene	no	.	1.678	0.618	0.000	0.082(783)	0.048(34)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ALPP_LS002	chr2:232379087|232379200:+	ALPP	alkaline phosphatase, placental	protein coding gene	no	ENST00000392027.2;ENST00000474529.1	6.251	0.957	2.117	0.15(1439)	0.155(109)	0.036(627)	non tumor-specific	nAS	yes
UN_MIR99AHG_UP_LS0004	chr21:15880184|15894299:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	.	2.517	1.040	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCO2_LS002	chr22:50524424|50525472:-	SCO2	synthesis of cytochrome C oxidase 2	protein coding gene	no	ENST00000395693.7	25.359	12.997	17.712	0.95(9100)	0.923(648)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_C6orf48_UP_LS0520	chr6:31817484|31829603:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	67.696	15.518	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
ADAMTS17_LS015	chr15:100254179|100261479:-	ADAMTS17	ADAM metallopeptidase with thrombospondin type 1 motif 17	protein coding gene	no	ENST00000268070.8;ENST00000378898.8;ENST00000559976.1	0.923	0.435	1.271	0.255(2439)	0.248(174)	0.59(10249)	non tumor-specific	nAS	yes
UBA52_LS011	chr19:18571909|18573293:+	UBA52	ubiquitin A-52 residue ribosomal protein fusion product 1	protein coding gene	no	ENST00000598814.1;ENST00000442744.6;ENST00000598814.1;ENST00000442744.6;ENST00000598814.1;ENST00000442744.6	261.125	117.474	578.109	0.987(9453)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KDM5A_LS0021	chr12:295793|306946:-	KDM5A	lysine demethylase 5A	protein coding gene	yes	.	0.432	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
COPS7A_LS006	chr12:6724152|6728223:+	COPS7A	COP9 signalosome subunit 7A	protein coding gene	no	ENST00000542150.5;ENST00000542150.5	0.008	0.014	0.629	0.478(4582)	0.546(383)	0.09(1569)	non tumor-specific	alt_5prime;exon_skip	yes
SLC7A7_LS028	chr14:22815451|22822919:-	SLC7A7	solute carrier family 7 member 7	protein coding gene	no	ENST00000557629.5	0.208	0.134	0.987	0.273(2613)	0.312(219)	0.106(1837)	non tumor-specific	nAS	yes
PLCG2_LS045	chr16:81938915|81939892:+	PLCG2	phospholipase C gamma 2	protein coding gene	no	ENST00000564138.5;ENST00000359376.7;ENST00000567373.5;ENST00000563834.1;ENST00000567356.1	65.073	30.715	19.301	0.973(9318)	0.991(696)	0.967(16811)	non tumor-specific	alt_5prime	yes
UN_RAB38_LS0014	chr11:88149955|88173412:-	RAB38	RAB38, member RAS oncogene family	protein coding gene	no	.	4.056	0.520	0.000	0.052(500)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
AC084816.1_LS017	chr12:22888044|22969363:+	AC084816.1	-	lncRNA gene	no	ENST00000538317.5	2.727	0.000	0.773	0.02(188)	0(0)	0.065(1131)	non tumor-specific	nAS	yes
UN_AC093677.2_UP_LS0006	chr4:74330304|74335758:-	AC093677.2	-	lncRNA gene	no	.	1.992	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF43_LS0016	chr19:21808212|21808297:+	ZNF43	zinc finger protein 43	protein coding gene	no	.	2.965	0.221	0.000	0.008(77)	0.004(3)	0(0)	non tumor-specific	nAS	no
CDK16_LS025	chrX:47226909|47229371:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	ENST00000517426.5	0.422	0.199	0.625	0.285(2731)	0.235(165)	0.028(492)	non tumor-specific	nAS	yes
NEURL4_LS010	chr17:7319208|7320759:-	NEURL4	neuralized E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000315614.11;ENST00000399464.6;ENST00000573186.5;ENST00000570460.5;ENST00000571887.5;ENST00000572029.1	13.001	9.163	32.187	0.981(9399)	0.977(686)	0.979(17017)	non tumor-specific	nAS	yes
ZRSR2_LS007	chrX:15799953|15801274:+	ZRSR2	zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2	protein coding gene	no	ENST00000380308.7	1.122	0.604	0.786	0.743(7116)	0.792(556)	0.336(5843)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SFSWAP_LS011	chr12:131725630|131726940:+	SFSWAP	splicing factor SWAP	protein coding gene	no	ENST00000261674.8;ENST00000538548.5;ENST00000535236.5;ENST00000541286.5;ENST00000542813.2	30.303	15.644	60.294	0.987(9456)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
EGF_LS022	chr4:109983541|109987744:+	EGF	epidermal growth factor	protein coding gene	no	ENST00000509793.5;ENST00000265171.9;ENST00000503392.1;ENST00000511228.5	4.007	31.345	2.192	0.491(4706)	0.644(452)	0.53(9207)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC007731.5_LS0009	chr22:20430927|20431018:-	AC007731.5	-	protein coding gene	no	.	1.182	0.285	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C22orf39_LS0035	chr22:19405531|19405786:-	C22orf39	chromosome 22 open reading frame 39	protein coding gene	no	.	3.146	1.865	0.000	0.323(3096)	0.463(325)	0(0)	non tumor-specific	nAS	no
TUBGCP5_LS027	chr15:23032029|23032728:-	TUBGCP5	tubulin gamma complex associated protein 5	protein coding gene	no	ENST00000614508.4;ENST00000615383.4;ENST00000620435.4;ENST00000612085.4;ENST00000622507.1	8.391	5.081	10.811	0.91(8719)	0.966(678)	0.959(16663)	non tumor-specific	nAS	yes
UN_HSPB2_UP_LS0003	chr11:111878873|111882368:+	HSPB2	heat shock protein family B (small) member 2	protein coding gene	no	.	0.686	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL138752.2_LS0102	chr9:37798728|37801353:-	AL138752.2	-	protein coding gene	no	.	1.536	0.152	0.000	0.01(92)	0.011(8)	0(0)	non tumor-specific	nAS	no
ZSCAN31_LS035	chr6:28353482|28353862:-	ZSCAN31	zinc finger and SCAN domain containing 31	protein coding gene	no	ENST00000476001.1	0.447	0.292	0.731	0.059(565)	0.04(28)	0.099(1724)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
CD6_LS023	chr11:61017550|61017759:+	CD6	CD6 molecule	protein coding gene	no	ENST00000313421.11;ENST00000344931.9;ENST00000433107.6;ENST00000452451.6;ENST00000352009.9	3.724	2.472	2.454	0.686(6570)	0.697(489)	0.737(12811)	non tumor-specific	alt_3prime	yes
RPL29_LS011	chr3:51995469|51995731:-	RPL29	ribosomal protein L29	protein coding gene	no	ENST00000466397.5	0.036	0.254	0.681	0.461(4420)	0.481(338)	0.224(3886)	non tumor-specific	nAS	yes
MINK1_LS013	chr17:4886617|4887110:+	MINK1	misshapen like kinase 1	protein coding gene	no	ENST00000572330.5	0.321	0.526	4.528	0.43(4121)	0.399(280)	0.943(16385)	non tumor-specific	alt_5prime	yes
FAM78A_LS006	chr9:131262737|131263478:-	FAM78A	family with sequence similarity 78 member A	protein coding gene	no	ENST00000247295.4	0.182	0.221	0.712	0.029(281)	0.043(30)	0.038(655)	non tumor-specific	exon_skip	yes
MRPL3_LS011	chr3:131490080|131500430:-	MRPL3	mitochondrial ribosomal protein L3	protein coding gene	no	ENST00000512877.1	0.060	0.054	1.070	0.762(7301)	0.729(512)	0.565(9815)	non tumor-specific	alt_3prime;exon_skip	yes
HYAL6P_LS001	chr7:123815031|123819341:+	HYAL6P	hyaluronidase 6, pseudogene	pseudogene	no	ENST00000417674.1	0.263	0.008	0.596	0.011(106)	0.007(5)	0.002(31)	non tumor-specific	nAS	yes
C19orf24_LS003	chr19:1276673|1277183:+	C19orf24	family with sequence similarity 174 member C	protein coding gene	no	ENST00000590269.2	0.143	0.311	0.809	0.526(5037)	0.353(248)	0.377(6560)	non tumor-specific	alt_5prime;intron_retention	yes
CAST_LS052	chr5:96743746|96746342:+	CAST	RNA polymerase I subunit G	protein coding gene	no	ENST00000515663.5;ENST00000484552.5;ENST00000325674.11;ENST00000512191.1	0.054	0.044	0.695	0.065(627)	0.12(84)	0.083(1443)	non tumor-specific	nAS	yes
UN_AC131097.1_UP_LS0074	chr2:241806520|241807320:-	AC131097.1	-	lncRNA gene	no	.	1.364	5.912	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACTR8_LS006	chr3:53873146|53875948:-	ACTR8	actin related protein 8	protein coding gene	no	ENST00000486794.1	0.554	0.222	0.662	0.255(2440)	0.251(176)	0.118(2049)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GUCY1A2_UP_LS0005	chr11:107305395|107308283:-	GUCY1A2	guanylate cyclase 1 soluble subunit alpha 2	protein coding gene	no	.	1.594	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DNM2_LS0078	chr19:10831049|10831078:-	DNM2	dynamin 2	protein coding gene	no	.	4.972	0.963	0.000	0.009(90)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_MAPK10_LS0005	chr4:86090437|86098421:-	MAPK10	mitogen-activated protein kinase 10	protein coding gene	yes	.	1.728	0.155	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC25A24P1_LS002	chr1:108284351|108331171:+	SLC25A24P1	SLC25A24 pseudogene 1	pseudogene	no	ENST00000411846.6	3.833	0.163	0.736	0.078(744)	0.023(16)	0.061(1067)	non tumor-specific	nAS	yes
UN_AP001636.3_LS0013	chr11:59022118|59051260:-	AP001636.3	-	lncRNA gene	no	.	1.196	0.530	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF396_LS007	chr18:35374823|35377278:-	ZNF396	zinc finger protein 396	protein coding gene	no	ENST00000587422.1	0.106	0.035	0.661	0.004(42)	0.014(10)	0.003(56)	non tumor-specific	exon_skip	yes
AC083798.2_LS001	chr3:122416250|122420989:+	AC083798.2	-	lncRNA gene	no	ENST00000608465.5	1.151	0.596	0.758	0.489(4689)	0.567(398)	0.292(5068)	non tumor-specific	nAS	yes
CA7_LS001	chr16:66844527|66847030:+	CA7	carbonic anhydrase 7	protein coding gene	no	ENST00000338437.6	1.612	7.783	2.873	0.065(624)	0.087(61)	0.15(2605)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IPPK_LS0009	chr9:92617081|92631586:+	IPPK	inositol-pentakisphosphate 2-kinase	protein coding gene	no	.	1.199	0.118	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CDKAL1_LS0066	chr6:21000361|21028410:-	CDKAL1	CDK5 regulatory subunit associated protein 1 like 1	protein coding gene	no	.	3.385	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
IGHV3OR16-11_LS001	chr16:33859198|33859307:-	IGHV3OR16-11	immunoglobulin heavy variable 3/OR16-11 (pseudogene)	no	no	ENST00000565524.3	0.575	0.661	0.780	0.177(1693)	0.265(186)	0.032(562)	non tumor-specific	nAS	yes
UN_AL157413.1_UP_LS0019	chr20:24822458|24823374:-	AL157413.1	-	lncRNA gene	no	.	4.302	0.276	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARID4B_LS038	chr1:235234492|235240313:-	ARID4B	AT-rich interaction domain 4B	protein coding gene	no	ENST00000366603.6;ENST00000349213.7;ENST00000264183.8;ENST00000421364.5;ENST00000491632.5;ENST00000418304.1;ENST00000466653.1	14.000	8.964	8.159	0.887(8499)	0.967(679)	0.964(16750)	non tumor-specific	exon_skip	yes
CARF_LS021	chr2:202942967|202952559:+	CARF	CDKN2A interacting protein	protein coding gene	no	ENST00000402905.7;ENST00000431787.5;ENST00000444724.5;ENST00000414857.5;ENST00000422368.5;ENST00000471271.5;ENST00000457031.5;ENST00000427712.5;ENST00000438828.3	1.744	1.536	6.389	0.702(6728)	0.85(597)	0.943(16392)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MDH2_LS0028	chr7:76064438|76064876:+	MDH2	malate dehydrogenase 2	protein coding gene	no	.	64.802	14.352	0.000	0.013(126)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SMCHD1_LS024	chr18:2722663|2724899:+	SMCHD1	structural maintenance of chromosomes flexible hinge domain containing 1	protein coding gene	yes	ENST00000320876.10;ENST00000577880.5	8.851	5.764	8.497	0.714(6837)	0.866(608)	0.949(16498)	non tumor-specific	exon_skip;intron_retention	yes
UN_ZNF793_LS0004	chr19:37507201|37508265:+	ZNF793	zinc finger protein 793	protein coding gene	no	.	0.965	0.304	0.000	0.004(39)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_SP140L_LS0007	chr2:230342542|230357805:+	SP140L	SP140 nuclear body protein like	protein coding gene	no	.	2.007	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TAF15_LS046	chr17:35844728|35844858:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	ENST00000604694.1	7.503	3.618	1.391	0.961(9203)	0.919(645)	0.721(12537)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_COL5A1_LS0059	chr9:134815981|134817806:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	.	28.947	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NFYA_LS0030	chr6:41090309|41091567:+	NFYA	nuclear transcription factor Y subunit alpha	protein coding gene	no	.	4.143	0.628	0.000	0.004(42)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
LINC02029_LS001	chr3:157082918|157087859:+	LINC02029	long intergenic non-protein coding RNA 2029	lncRNA gene	no	ENST00000469196.1	0.364	0.091	0.857	0.076(726)	0.06(42)	0.06(1044)	non tumor-specific	nAS	yes
FAM129C_LS012	chr19:17537543|17539150:+	FAM129C	niban apoptosis regulator 3	protein coding gene	no	ENST00000595684.5;ENST00000332386.9;ENST00000335393.8;ENST00000601861.5;ENST00000599164.5;ENST00000449408.6;ENST00000600519.5;ENST00000600871.5;ENST00000599124.1;ENST00000599819.1	1.985	7.748	1.157	0.154(1477)	0.165(116)	0.309(5377)	non tumor-specific	exon_skip	yes
RELN_LS008	chr7:103483850|103486197:-	RELN	reelin	protein coding gene	no	ENST00000428762.5;ENST00000343529.9;ENST00000424685.2;ENST00000473945.1	9.352	6.554	4.871	0.308(2953)	0.815(572)	0.815(14162)	non tumor-specific	nAS	yes
LRRC9_LS021	chr14:59982060|59985105:+	LRRC9	leucine rich repeat containing 9	protein coding gene	no	ENST00000445360.5;ENST00000254271.8;ENST00000647410.1	9.174	0.052	1.073	0.009(87)	0.003(2)	0.072(1250)	non tumor-specific	nAS	yes
TESK2_LS011	chr1:45347062|45347918:-	TESK2	testis associated actin remodelling kinase 2	protein coding gene	no	.;.	1.774	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NNMT_LS0081	chr11:114298107|114312135:-	NNMT	nicotinamide N-methyltransferase	protein coding gene	no	.	4.016	2.332	0.000	0.092(877)	0.09(63)	0(0)	non tumor-specific	nAS	no
COX10-AS1_LS006	chr17:13880371|13892725:-	COX10-AS1	COX10 antisense RNA 1	lncRNA gene	no	ENST00000582752.6;ENST00000577798.6;ENST00000602743.1	1.391	0.563	1.013	0.077(733)	0.117(82)	0.492(8545)	non tumor-specific	nAS	yes
ITGA1_LS018	chr5:52910419|52915464:+	ITGA1	integrin subunit alpha 1	protein coding gene	no	ENST00000282588.6;ENST00000504669.5	23.814	27.250	22.763	0.911(8724)	0.969(680)	0.946(16445)	non tumor-specific	nAS	yes
AC022784.5_LS002	chr8:9141798|9145251:+	AC022784.5	-	lncRNA gene	no	ENST00000522057.1	0.306	0.097	0.739	0.094(904)	0.067(47)	0.046(799)	non tumor-specific	nAS	yes
KIAA0319L_LS028	chr1:35470960|35478966:-	KIAA0319L	KIAA0319 like	protein coding gene	no	ENST00000431916.5	0.084	0.068	0.670	0.678(6495)	0.786(552)	0.162(2815)	non tumor-specific	exon_skip	yes
UN_INPP5B_LS0031	chr1:37883732|37885638:-	INPP5B	inositol polyphosphate-5-phosphatase B	protein coding gene	no	.	0.999	0.272	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
KANK4_LS004	chr1:62263311|62266732:-	KANK4	KN motif and ankyrin repeat domains 4	protein coding gene	no	ENST00000371153.8;ENST00000371150.5;ENST00000354381.3	4.795	2.676	1.978	0.349(3340)	0.615(432)	0.553(9617)	non tumor-specific	nAS	yes
CYB561D2_LS014	chr3:50366331|50367437:+	CYB561D2	cytochrome b561 family member D2	lncRNA gene	yes	ENST00000607583.1	0.617	0.411	2.644	0.548(5248)	0.726(510)	0.794(13798)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
KIF1B_LS045	chr1:10345953|10347761:+	KIF1B	kinesin family member 1B	protein coding gene	yes	ENST00000263934.10;ENST00000377086.5;ENST00000377081.5;ENST00000620295.2;ENST00000622724.3;ENST00000465635.5;ENST00000483340.1	10.657	10.317	7.069	0.863(8269)	0.95(667)	0.962(16725)	non tumor-specific	exon_skip	yes
UBASH3A_LS020	chr21:42442596|42447057:+	UBASH3A	ubiquitin associated and SH3 domain containing A	protein coding gene	no	ENST00000398367.1	0.270	0.072	0.716	0.068(650)	0.046(32)	0.028(495)	non tumor-specific	nAS	yes
SH3BP2_LS042	chr4:2832412|2832990:+	SH3BP2	SH3 domain binding protein 2	protein coding gene	no	ENST00000452765.6;ENST00000442312.6;ENST00000435136.6;ENST00000511747.5;ENST00000503393.6;ENST00000515737.5;ENST00000356331.9;ENST00000510204.5;ENST00000515802.5;ENST00000504450.1;ENST00000513069.1	28.909	15.076	38.945	0.997(9554)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JPT1_LS0010	chr17:75135605|75135644:+	JPT1	Jupiter microtubule associated homolog 1	protein coding gene	no	.	3.339	0.202	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLA2G5_LS008	chr1:20063602|20068873:+	PLA2G5	phospholipase A2 group V	protein coding gene	no	ENST00000469069.5	1.191	1.524	2.213	0.043(414)	0.043(30)	0.146(2543)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MIR548U_UP_LS0001	chr6:57221717|57318437:+	MIR548U	microRNA 548u	small non-coding RNA gene	no	.	1.861	0.151	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TEX2_LS0007	chr17:64149115|64150841:-	TEX2	testis expressed 2	protein coding gene	no	.	2.270	0.276	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
THADA_LS031	chr2:43508780|43527879:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405975.6;ENST00000407351.5;ENST00000405006.8;ENST00000398653.5;ENST00000408045.7;ENST00000402796.5;ENST00000462185.1	16.806	9.669	12.938	0.937(8978)	0.972(682)	0.974(16928)	non tumor-specific	exon_skip	yes
MUC19_LS077	chr12:40510012|40510169:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9	30.798	0.737	0.801	0.002(19)	0.003(2)	0.03(526)	non tumor-specific	nAS	yes
UN_NIPBL_LS0020	chr5:36985309|36985376:+	NIPBL	NIPBL cohesin loading factor	protein coding gene	no	.	21.734	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAM219A_LS004	chr9:34401720|34402387:-	FAM219A	family with sequence similarity 219 member A	protein coding gene	no	ENST00000379089.5;ENST00000379087.5;ENST00000379084.5;ENST00000379081.5;ENST00000379080.5;ENST00000445726.5;ENST00000297620.8;ENST00000422409.5	27.575	19.757	35.392	0.97(9296)	0.976(685)	0.979(17013)	non tumor-specific	alt_3prime	yes
DDX11_LS044	chr12:31097997|31100635:+	DDX11	DEAD/H-box helicase 11	protein coding gene	no	ENST00000542838.5;ENST00000228264.10;ENST00000435753.6;ENST00000536265.5;ENST00000545668.5;ENST00000350437.8;ENST00000539699.5	10.247	2.703	14.833	0.981(9396)	0.953(669)	0.973(16906)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FBXO4_LS0001	chr5:41925420|41927013:+	FBXO4	F-box protein 4	protein coding gene	no	.	2.170	0.132	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_KHDC1_LS0024	chr6:73270527|73284636:+	KHDC1	KH domain containing 1	protein coding gene	no	.	1.677	0.531	0.000	0.035(333)	0.036(25)	0(0)	non tumor-specific	nAS	no
ZNF133_LS014	chr20:18290074|18305681:+	ZNF133	zinc finger protein 133	protein coding gene	no	.;.	1.942	0.703	0.000	0.12(1145)	0.114(80)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AGO3_LS022	chr1:36036267|36039790:+	AGO3	argonaute RISC catalytic component 3	protein coding gene	no	ENST00000373191.8;ENST00000634486.1;ENST00000246314.10	8.835	4.145	5.988	0.82(7852)	0.875(614)	0.965(16769)	non tumor-specific	nAS	yes
TCP11X2_LS002	chrX:102457812|102460597:-	TCP11X2	t-complex 11 family, X-linked 2	protein coding gene	no	ENST00000643059.1	2.205	0.000	1.049	0.004(38)	0(0)	0.045(784)	non tumor-specific	nAS	yes
CASP14_LS001	chr19:15049645|15052206:+	CASP14	caspase 14	protein coding gene	no	ENST00000427043.3	10.151	1.456	1.202	0.131(1251)	0.067(47)	0.209(3632)	non tumor-specific	exon_skip	yes
UN_KIFC2_LS0041	chr8:144472046|144472163:+	KIFC2	kinesin family member C2	protein coding gene	no	.	13.159	5.036	0.000	0.151(1444)	0.071(50)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_TRAPPC8_LS0018	chr18:31849739|31853849:-	TRAPPC8	trafficking protein particle complex 8	protein coding gene	no	.	2.631	0.146	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DPY19L1P1_LS0057	chr7:32726470|32728519:-	DPY19L1P1	DPY19L1 pseudogene 1	pseudogene	no	.	0.978	0.259	0.000	0.048(458)	0.044(31)	0(0)	non tumor-specific	nAS	no
GNB2_LS012	chr7:100676322|100676535:+	GNB2	G protein subunit beta 2	protein coding gene	no	ENST00000303210.8;ENST00000451587.5;ENST00000393926.5;ENST00000431068.5;ENST00000412215.5;ENST00000393924.1;ENST00000480159.1	175.378	98.919	185.271	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
PIGF_LS006	chr2:46581591|46591818:-	PIGF	phosphatidylinositol glycan anchor biosynthesis class F	protein coding gene	no	.;.	2.536	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC105277.1_LS006	chr1:58896009|58896998:-	AC105277.1	-	lncRNA gene	no	ENST00000635492.1	1.444	0.475	0.693	0.023(216)	0.021(15)	0.165(2870)	non tumor-specific	nAS	yes
PZP_LS020	chr12:9163789|9164133:-	PZP	PZP alpha-2-macroglobulin like	protein coding gene	no	ENST00000261336.6;ENST00000539983.5;ENST00000543108.1	0.803	3.200	0.816	0.042(403)	0.155(109)	0.12(2090)	non tumor-specific	exon_skip	yes
CFAP46_LS051	chr10:132920182|132922104:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	ENST00000368586.9	4.317	3.197	1.316	0.074(712)	0.144(101)	0.385(6690)	non tumor-specific	nAS	yes
STXBP1_LS013	chr9:127654964|127658375:+	STXBP1	syntaxin binding protein 1	protein coding gene	no	ENST00000637464.1;ENST00000637060.1	3.135	0.000	0.797	0(1)	0(0)	0.109(1903)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EIF4G1_LS0016	chr3:184317478|184319696:-	EIF4G1	eukaryotic translation initiation factor 4 gamma 1	protein coding gene	no	.	0.927	0.640	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PPIEL_LS0001	chr1:39522505|39526908:-	PPIEL	peptidylprolyl isomerase E like pseudogene	pseudogene	no	.	15.702	0.640	0.000	0.029(278)	0.023(16)	0(0)	non tumor-specific	nAS	no
PKD1P1_LS062	chr16:16333763|16335861:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	.;.;.	2.333	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
AC243571.1_LS001	chr17:37798961|37802101:-	AC243571.1	-	lncRNA gene	no	ENST00000615743.1	1.205	0.575	0.800	0.053(504)	0.111(78)	0.008(145)	non tumor-specific	nAS	yes
UN_CBS_LS0017	chr21:43073341|43073615:-	CBS	cystathionine beta-synthase	protein coding gene	no	.	3.612	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_CDH11_LS0009	chr16:65005038|65053804:-	CDH11	cadherin 11	protein coding gene	yes	.	12.983	2.102	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL021937.3_UP_LS0001	chr22:32353014|32354847:-	AL021937.3	-	lncRNA gene	no	.	2.060	0.157	0.000	0.024(234)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_RF00019_UP_LS1990	chr9:133071698|133087103:+	RF00019	-	small non-coding RNA gene	no	.	5.644	1.162	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP005230.1_LS0051	chr18:2111736|2114814:-	AP005230.1	-	lncRNA gene	no	.	2.441	0.715	0.000	0.004(34)	0.014(10)	0(0)	non tumor-specific	nAS	no
FRY_LS057	chr13:32244182|32247323:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	7.714	8.113	9.885	0.676(6472)	0.877(616)	0.964(16757)	non tumor-specific	exon_skip	yes
TMEM132A_LS025	chr11:60936016|60936747:+	TMEM132A	transmembrane protein 132A	protein coding gene	no	ENST00000535480.1	0.693	0.117	1.374	0.744(7126)	0.554(389)	0.487(8457)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MAP4K1_LS0021	chr19:38606215|38606896:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	.	1.990	0.274	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CNTNAP4_LS009	chr16:76448951|76452508:+	CNTNAP4	contactin associated protein family member 4	protein coding gene	no	ENST00000377504.8;ENST00000622250.4;ENST00000478060.5	0.329	0.239	1.616	0.042(403)	0.01(7)	0.084(1459)	non tumor-specific	exon_skip	yes
UN_FAM57B_UP_LS0002	chr16:30053072|30069895:-	FAM57B	TLC domain containing 3B	protein coding gene	no	.	4.618	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AC246787.2_LS004	chr14:105896108|105896476:+	AC246787.2	-	lncRNA gene	no	ENST00000418566.1	2.697	0.256	0.973	0.018(169)	0.01(7)	0.055(957)	non tumor-specific	nAS	yes
UN_MYH9_LS0168	chr22:36282491|36282558:+	MYH9	myosin heavy chain 9	protein coding gene	yes	.	7.450	0.392	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERCC2_LS014	chr19:45357699|45361524:-	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit	protein coding gene	no	ENST00000391945.9;ENST00000646507.1;ENST00000391944.7;ENST00000391942.6;ENST00000391941.6;ENST00000587376.6	42.555	21.823	21.484	0.993(9512)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
MOGS_LS009	chr2:74463386|74464896:-	MOGS	mannosyl-oligosaccharide glucosidase	protein coding gene	no	ENST00000647915.1;ENST00000647753.1	2.953	0.566	0.000	0.037(356)	0.027(19)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HERC4_LS030	chr10:68025676|68032778:-	HERC4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000277817.10;ENST00000412272.6;ENST00000395198.7;ENST00000427635.6;ENST00000373700.8	16.664	11.819	13.750	0.945(9056)	0.989(694)	0.975(16943)	non tumor-specific	alt_5prime;exon_skip	yes
PPA1_LS012	chr10:70230399|70233264:-	PPA1	inorganic pyrophosphatase 1	protein coding gene	no	ENST00000373232.7;ENST00000373230.7;ENST00000625364.1	147.760	89.738	104.907	0.95(9103)	0.979(687)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CTHRC1_LS002	chr8:103372659|103375738:+	CTHRC1	collagen triple helix repeat containing 1	protein coding gene	no	ENST00000520337.1	1.285	0.801	1.141	0.623(5968)	0.298(209)	0.295(5130)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CRELD2_LS0002	chr22:49919300|49919730:+	CRELD2	cysteine rich with EGF like domains 2	protein coding gene	no	.	5.992	1.396	0.000	0.007(67)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
USP9Y_LS012	chrY:12738309|12739525:+	USP9Y	ubiquitin specific peptidase 9 Y-linked	protein coding gene	no	ENST00000338981.7;ENST00000426564.6	4.582	3.262	4.755	0.229(2192)	0.375(263)	0.587(10201)	non tumor-specific	nAS	yes
UN_AC095032.2_UP_LS0004	chr1:102095810|102105778:+	AC095032.2	-	lncRNA gene	no	.	3.164	1.648	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FAM111A-DT_LS0001	chr11:59132151|59133579:-	FAM111A-DT	FAM111A divergent transcript	lncRNA gene	no	.	1.607	0.132	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
SEC14L5_LS006	chr16:4992030|4996348:+	SEC14L5	SEC14 like lipid binding 5	protein coding gene	no	ENST00000251170.11	2.905	1.645	1.425	0.088(846)	0.097(68)	0.444(7717)	non tumor-specific	nAS	yes
BBS1_LS032	chr11:66531028|66531656:+	BBS1	Bardet-Biedl syndrome 1	protein coding gene	no	ENST00000526760.5;ENST00000318312.11;ENST00000455748.6;ENST00000529955.5;ENST00000393994.4;ENST00000630659.2	34.285	35.223	31.590	0.982(9407)	0.994(698)	0.976(16969)	non tumor-specific	nAS	yes
UN_CCNL1_LS0001	chr3:157148577|157149287:-	CCNL1	minichromosome maintenance complex component 2	protein coding gene	yes	.	15.778	5.507	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_PLA2G6_LS0011	chr22:38113654|38115011:-	PLA2G6	phospholipase A2 group VI	protein coding gene	no	.	10.825	0.458	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MIR4458HG_LS0005	chr5:8458122|8459933:+	MIR4458HG	MIR4458 host gene	lncRNA gene	no	.	1.159	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEC24C_LS0026	chr10:73764812|73765451:+	SEC24C	SEC24 homolog C, COPII coat complex component	protein coding gene	no	.	2.542	0.688	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC108010.1_LS0001	chr7:128623781|128626295:+	AC108010.1	-	lncRNA gene	no	.	3.980	1.302	0.000	0.037(359)	0.034(24)	0(0)	non tumor-specific	nAS	no
UN_AC009021.1_UP_LS0002	chr16:22680974|22690963:-	AC009021.1	-	lncRNA gene	no	.	7.875	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPC2_LS0025	chr2:148769289|148770792:+	EPC2	enhancer of polycomb homolog 2	protein coding gene	no	.	0.810	0.391	0.000	0.012(116)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_AP000344.1_LS0006	chr22:23459572|23460353:+	AP000344.1	-	pseudogene	no	.	1.079	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC093827.5_LS016	chr4:86933542|86935988:-	AC093827.5	-	protein coding gene	no	ENST00000503001.5	1.336	1.001	1.638	0.586(5618)	0.765(537)	0.688(11962)	non tumor-specific	exon_skip	yes
UN_NR2F2-AS1_LS0001	chr15:96290783|96321388:-	NR2F2-AS1	NR2F2 antisense RNA 1	lncRNA gene	no	.	4.319	2.484	0.000	0.002(23)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ZNF431_LS0055	chr19:21184597|21191154:+	ZNF431	zinc finger protein 431	protein coding gene	no	.	3.041	0.238	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
DLG2_LS045	chr11:84534731|84720296:-	DLG2	membrane palmitoylated protein 2	protein coding gene	no	ENST00000648622.1	1.508	2.024	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	yes
AP000350.1_LS001	chr22:23941251|23942601:+	AP000350.1	-	pseudogene	no	ENST00000443377.1	2.554	0.369	0.799	0.003(26)	0.004(3)	0.007(124)	non tumor-specific	nAS	yes
UN_C6orf48_UP_LS0468	chr6:31817463|31829520:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	84.850	13.587	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	nAS	no
AP000769.3_LS002	chr11:65487620|65487890:-	AP000769.3	-	lncRNA gene	no	ENST00000622944.1	0.256	0.000	0.681	0.001(7)	0(0)	0.002(35)	non tumor-specific	nAS	yes
PDGFC_LS004	chr4:156763206|156767962:-	PDGFC	platelet derived growth factor C	protein coding gene	no	ENST00000422544.2;ENST00000422544.2	0.435	0.298	0.816	0.572(5479)	0.715(502)	0.319(5542)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ENPP7P2_LS0001	chr3:75447389|75491038:-	ENPP7P2	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 2	pseudogene	no	.	1.800	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PDPK1_LS030	chr16:2595850|2597123:+	PDPK1	3-phosphoinositide dependent protein kinase 1	protein coding gene	no	ENST00000342085.8;ENST00000268673.11;ENST00000389224.7	19.349	16.982	11.280	0.947(9069)	0.967(679)	0.973(16912)	non tumor-specific	exon_skip	yes
RBMS2_LS026	chr12:56588374|56589278:+	RBMS2	RNA binding motif single stranded interacting protein 2	protein coding gene	no	.;.	3.644	0.104	0.000	0.009(83)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RARG_LS0045	chr12:53211661|53213107:+	RARG	retinoic acid receptor gamma	protein coding gene	no	.	1.750	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MEX3D_LS0031	chr19:1555989|1556030:+	MEX3D	mex-3 RNA binding family member D	protein coding gene	no	.	1.947	0.516	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
RRN3P2_LS010	chr16:29094330|29096131:+	RRN3P2	RRN3 pseudogene 2	lncRNA gene	no	ENST00000564580.5	4.224	2.034	3.218	0.508(4870)	0.528(371)	0.855(14860)	non tumor-specific	nAS	yes
UN_RHOG_LS0009	chr11:3827178|3827231:+	RHOG	ras homolog family member G	protein coding gene	no	.	3.630	1.130	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
SUN5_LS011	chr20:33001278|33002587:-	SUN5	Sad1 and UNC84 domain containing 5	protein coding gene	no	ENST00000356173.7;ENST00000420875.5	2.250	0.000	0.689	0(2)	0(0)	0.013(218)	non tumor-specific	exon_skip	yes
UN_OSBPL9_LS0051	chr1:51786617|51787296:+	OSBPL9	oxysterol binding protein like 9	protein coding gene	no	.	12.105	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_TSC22D3_LS0040	chrX:107716230|107716690:-	TSC22D3	TSC22 domain family member 3	protein coding gene	no	.	79.950	20.514	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_FMO4_LS0008	chr1:171324300|171334411:+	FMO4	flavin containing dimethylaniline monoxygenase 4	protein coding gene	no	.	1.133	0.110	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_APOC4_UP_LS0009	chr19:44919235|44931029:+	APOC4	apolipoprotein C4	protein coding gene	no	.	38.188	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZDHHC23_LS012	chr3:113958538|113959521:+	ZDHHC23	zinc finger DHHC-type palmitoyltransferase 23	protein coding gene	no	ENST00000478793.1	1.855	0.877	1.057	0.344(3298)	0.261(183)	0.514(8930)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_HLA-H_LS0019	chr6:29888672|29888709:-	HLA-H	major histocompatibility complex, class I, H (pseudogene)	pseudogene	no	.	17.965	8.996	0.000	0.022(209)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_MIPEP_LS0005	chr13:23730462|23734547:+	MIPEP	mitochondrial intermediate peptidase	protein coding gene	no	.	1.175	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
FRY_LS041	chr13:32208964|32208966:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000380250.7	1.023	0.000	0.597	0(1)	0(0)	0.004(78)	non tumor-specific	nAS	yes
SH3GLB1_LS007	chr1:86724405|86730088:+	SH3GLB1	SH3 domain containing GRB2 like, endophilin B1	protein coding gene	yes	.;.	18.318	0.342	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BAG6_LS0099	chr6:31645125|31647712:+	BAG6	BAG cochaperone 6	protein coding gene	no	.	2.441	0.390	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC11B_LS0009	chr5:732880|733752:-	ZDHHC11B	zinc finger DHHC-type containing 11B	protein coding gene	no	.	1.603	0.060	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZMYM2_LS0039	chr13:20071923|20082016:+	ZMYM2	zinc finger MYM-type containing 2	protein coding gene	yes	.	2.462	0.000	0.000	0.008(75)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
RAD9B_LS016	chr12:110518782|110518874:+	RAD9B	RAD9 checkpoint clamp component B	protein coding gene	no	ENST00000409246.5;ENST00000392672.8;ENST00000409300.5;ENST00000409425.5;ENST00000409778.7;ENST00000358071.8	1.373	0.324	1.101	0.109(1048)	0.128(90)	0.569(9896)	non tumor-specific	nAS	yes
PMS1_LS037	chr2:189864228|189867799:+	PMS1	PMS1 homolog 1, mismatch repair system component	protein coding gene	no	ENST00000624204.3;ENST00000432292.7;ENST00000441310.6;ENST00000342075.8;ENST00000409823.7;ENST00000483293.1;ENST00000452382.1	18.114	9.180	9.995	0.976(9351)	0.981(689)	0.965(16782)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TMEM50A_LS004	chr1:25340579|25342961:+	TMEM50A	transmembrane protein 50A	protein coding gene	no	ENST00000374358.4;ENST00000480937.5;ENST00000468704.1	330.054	213.658	175.948	0.999(9571)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NSUN3_LS0006	chr3:94076598|94084107:+	NSUN3	NOP2/Sun RNA methyltransferase 3	protein coding gene	no	.	1.238	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_BMS1_UP_LS0002	chr10:42755425|42769279:+	BMS1	BMS1 ribosome biogenesis factor	protein coding gene	no	.	2.850	0.928	0.000	0.088(839)	0.11(77)	0(0)	non tumor-specific	nAS	no
VLDLR-AS1_LS011	chr9:2522046|2523053:-	VLDLR-AS1	VLDLR antisense RNA 1	lncRNA gene	no	ENST00000648733.1;ENST00000416826.6	1.316	0.255	1.470	0.059(561)	0.123(86)	0.577(10033)	non tumor-specific	nAS	yes
UN_MARK4_LS0044	chr19:45145260|45145338:+	MARK4	microtubule affinity regulating kinase 4	protein coding gene	no	.	6.133	0.608	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
CCDC50_LS006	chr3:191370036|191375062:+	CCDC50	coiled-coil domain containing 50	protein coding gene	no	ENST00000392455.8	12.774	11.859	2.212	0.869(8330)	0.963(676)	0.645(11203)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GALNT17_LS008	chr7:71421105|71571285:+	GALNT17	polypeptide N-acetylgalactosaminyltransferase like 6	protein coding gene	no	ENST00000333538.9;ENST00000498380.6;ENST00000467723.1;ENST00000618959.1	23.360	24.284	11.183	0.443(4249)	0.818(574)	0.861(14958)	non tumor-specific	alt_5prime;exon_skip	yes
UN_YAF2_LS0026	chr12:42238224|42238305:-	YAF2	YY1 associated factor 2	protein coding gene	no	.	0.278	0.039	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PPFIA1_UP_LS0001	chr11:70207003|70217545:+	PPFIA1	PTPRF interacting protein alpha 1	protein coding gene	no	.	1.729	0.042	0.000	0.015(147)	0.006(4)	0(0)	non tumor-specific	nAS	no
IGFBP1_LS005	chr7:45890717|45892960:+	IGFBP1	insulin like growth factor binding protein 1	protein coding gene	no	ENST00000468955.1;ENST00000468955.1	0.617	0.203	2.402	0.065(624)	0.108(76)	0.015(263)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AC090360.1_LS0007	chr18:80037506|80038521:+	AC090360.1	-	protein coding gene	no	.	6.856	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
Z84488.2_LS001	chr6:116399666|116426574:+	Z84488.2	-	protein coding gene	no	ENST00000644499.1	13.473	10.147	9.583	0.84(8050)	0.97(681)	0.944(16408)	non tumor-specific	alt_5prime	yes
UN_FEZ1_LS0062	chr11:125583957|125583995:-	FEZ1	leucine zipper tumor suppressor 1	protein coding gene	no	.	8.249	0.933	0.000	0.01(93)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AKAP9_UP_LS0012	chr7:91880864|91885616:+	AKAP9	A-kinase anchoring protein 9	protein coding gene	yes	.	2.073	0.649	0.000	0.199(1910)	0.158(111)	0(0)	non tumor-specific	nAS	no
UN_PLGRKT_UP_LS0026	chr9:5577511|5621371:-	PLGRKT	plasminogen receptor with a C-terminal lysine	protein coding gene	no	.	4.012	1.235	0.000	0.074(705)	0.007(5)	0(0)	non tumor-specific	nAS	no
CCM2_LS004	chr7:45000363|45063918:+	CCM2	CCM2 scaffold protein	protein coding gene	no	ENST00000541586.5	4.401	2.428	5.921	0.356(3408)	0.547(384)	0.97(16860)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MOV10_LS0041	chr1:112699612|112699685:+	MOV10	Mov10 RISC complex RNA helicase	protein coding gene	no	.	9.298	0.551	0.000	0.032(311)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
WLS_LS011	chr1:68153653|68155099:-	WLS	Wnt ligand secretion mediator	protein coding gene	no	ENST00000354777.6;ENST00000262348.8;ENST00000370976.7;ENST00000491811.5;ENST00000497187.5;ENST00000534713.5;ENST00000533537.5;ENST00000530486.5;ENST00000370973.2	111.380	113.410	62.431	0.971(9306)	0.997(700)	0.973(16920)	non tumor-specific	exon_skip	yes
MTMR9LP_LS014	chr1:32240664|32241137:-	MTMR9LP	myotubularin related protein 9 like, pseudogene	pseudogene	no	ENST00000441044.5	1.781	0.775	7.251	0.133(1271)	0.135(95)	0.9(15650)	non tumor-specific	nAS	yes
UN_INPP4B_LS0132	chr4:142721092|142725839:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	.	0.908	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ZHX3_LS042	chr20:41269083|41317509:-	ZHX3	zinc fingers and homeoboxes 3	protein coding gene	no	ENST00000559234.5;ENST00000441102.6;ENST00000559296.1	0.669	0.831	2.424	0.757(7254)	0.859(603)	0.832(14458)	non tumor-specific	exon_skip	yes
COL12A1_LS008	chr6:75090298|75091323:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000425443.6;ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6;ENST00000511023.1	58.159	23.241	43.137	0.927(8878)	0.977(686)	0.921(16007)	non tumor-specific	exon_skip	yes
UN_RPSAP68_UP_LS0285	chr21:8399316|8443494:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	390.089	122.827	0.000	0.014(135)	0.024(17)	0(0)	non tumor-specific	nAS	no
VPS13C_LS066	chr15:61964861|61966083:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	ENST00000644861.1;ENST00000249837.7;ENST00000261517.9;ENST00000645819.1;ENST00000395896.8;ENST00000395898.3	7.042	4.820	4.266	0.552(5293)	0.793(557)	0.852(14805)	non tumor-specific	nAS	yes
UN_AC073316.1_UP_LS0005	chr7:3196930|3264636:-	AC073316.1	-	lncRNA gene	no	.	2.478	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC138894.1_LS010	chr16:28476375|28477012:-	AC138894.1	-	protein coding gene	no	ENST00000636866.1;ENST00000636017.1;ENST00000638036.1	1.265	0.000	0.747	0(1)	0(0)	0.112(1953)	non tumor-specific	nAS	yes
FGF5_LS002	chr4:80267179|80274909:+	FGF5	fibroblast growth factor 5	protein coding gene	yes	ENST00000312465.11;ENST00000507780.1	3.776	0.632	2.137	0.094(897)	0.094(66)	0.218(3791)	non tumor-specific	exon_skip	yes
EML5_LS039	chr14:88704978|88705482:-	EML5	EMAP like 5	protein coding gene	no	ENST00000554922.5;ENST00000380664.9;ENST00000553281.5	2.379	0.762	1.161	0.092(883)	0.162(114)	0.401(6968)	non tumor-specific	nAS	yes
UN_DUS1L_LS0054	chr17:82065069|82065486:-	DUS1L	dihydrouridine synthase 1 like	protein coding gene	no	.	0.991	0.292	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	intron_retention	no
UN_CDK12_LS0032	chr17:39526316|39530633:+	CDK12	cyclin dependent kinase 12	protein coding gene	no	.	3.439	0.601	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC007277.1_LS005	chr2:170648066|170649922:-	AC007277.1	-	lncRNA gene	no	ENST00000428156.1	3.761	0.000	0.770	0.014(135)	0(0)	0.114(1980)	non tumor-specific	nAS	yes
UN_ACADVL_LS0045	chr17:7224524|7224635:-	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	.	1.742	0.307	0.000	0.044(418)	0.021(15)	0(0)	non tumor-specific	nAS	no
ERCC1_LS023	chr19:45423381|45478736:-	ERCC1	ERCC excision repair 1, endonuclease non-catalytic subunit	protein coding gene	no	ENST00000423698.6	0.172	0.107	0.985	0.506(4845)	0.406(285)	0.273(4739)	non tumor-specific	exon_skip	yes
USP24_LS063	chr1:55148570|55153870:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000294383.6	10.456	8.003	5.569	0.722(6921)	0.865(607)	0.914(15884)	non tumor-specific	exon_skip	yes
ZSCAN10_LS001	chr16:3090646|3091540:-	ZSCAN10	zinc finger and SCAN domain containing 10	protein coding gene	no	ENST00000576985.5;ENST00000252463.6;ENST00000575108.5;ENST00000538082.5;ENST00000571903.5;ENST00000572431.1;ENST00000572548.1	1.980	0.057	0.776	0.026(252)	0.001(1)	0.078(1349)	non tumor-specific	exon_skip	yes
ALDH6A1_LS002	chr14:74064920|74065181:-	ALDH6A1	aldehyde dehydrogenase 6 family member A1	protein coding gene	no	ENST00000553458.5;ENST00000554501.5;ENST00000350259.8;ENST00000555126.1	44.310	115.815	29.368	0.99(9489)	0.997(700)	0.975(16949)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
INPP4B_LS026	chr4:142270774|142305458:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	ENST00000513000.5;ENST00000262992.8;ENST00000508116.5;ENST00000509777.5;ENST00000511838.5;ENST00000512630.5;ENST00000510812.5;ENST00000514525.1;ENST00000506297.5;ENST00000507462.5	10.642	5.602	6.055	0.738(7067)	0.849(596)	0.923(16035)	non tumor-specific	exon_skip	yes
C1orf159_LS004	chr1:1082987|1083915:-	C1orf159	chromosome 1 open reading frame 159	protein coding gene	no	ENST00000379339.5;ENST00000379325.7;ENST00000477196.5;ENST00000467751.5;ENST00000464905.1;ENST00000379320.5;ENST00000434641.5;ENST00000379339.5;ENST00000379325.7;ENST00000477196.5;ENST00000467751.5;ENST00000464905.1;ENST00000379320.5;ENST00000434641.5	0.932	0.425	10.942	0.93(8914)	0.903(634)	0.968(16828)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CCNYL1_LS0015	chr2:207742342|207747032:+	CCNYL1	cyclin Y like 1	protein coding gene	no	.	7.946	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TMPO_LS004	chr12:98516517|98527886:+	TMPO	thymopoietin	protein coding gene	no	ENST00000549938.5	0.119	0.049	0.563	0.478(4578)	0.442(310)	0.009(165)	non tumor-specific	nAS	yes
TGDS_LS002	chr13:94576411|94577371:-	TGDS	TDP-glucose 4,6-dehydratase	protein coding gene	no	ENST00000261296.6	35.405	19.974	18.875	0.988(9465)	0.997(700)	0.976(16972)	non tumor-specific	exon_skip	yes
DPY19L1_LS011	chr7:34949898|34954698:-	DPY19L1	dpy-19 like C-mannosyltransferase 1	protein coding gene	no	ENST00000638088.1;ENST00000310974.8;ENST00000446375.1	18.117	10.079	6.192	0.912(8739)	0.959(673)	0.943(16396)	non tumor-specific	nAS	yes
SLC25A45_LS012	chr11:65377423|65379867:-	SLC25A45	solute carrier family 25 member 45	protein coding gene	no	.;.;.	2.083	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ZFYVE28_LS0003	chr4:2270856|2270937:-	ZFYVE28	zinc finger FYVE-type containing 28	protein coding gene	no	.	2.931	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
API5_LS005	chr11:43318801|43320821:+	API5	apoptosis inhibitor 5	protein coding gene	no	ENST00000455725.6;ENST00000531273.5;ENST00000378852.7;ENST00000534600.5	62.784	50.621	28.351	0.965(9247)	0.989(694)	0.977(16981)	non tumor-specific	exon_skip	yes
UN_AC073111.3_LS0132	chr7:150373021|150373157:-	AC073111.3	-	protein coding gene	no	.	1.607	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TRAM1_LS014	chr8:70600082|70606877:-	TRAM1	translocation associated membrane protein 1	protein coding gene	no	ENST00000521425.5	1.422	0.871	1.247	0.843(8079)	0.909(638)	0.571(9933)	non tumor-specific	alt_5prime;exon_skip	yes
SLC25A26_LS011	chr3:66346408|66356031:+	SLC25A26	solute carrier family 25 member 26	protein coding gene	no	ENST00000464350.6	0.092	0.005	0.777	0.042(405)	0.053(37)	0.379(6593)	non tumor-specific	exon_skip	yes
DRAXIN_LS006	chr1:11715208|11719584:+	DRAXIN	dorsal inhibitory axon guidance protein	protein coding gene	no	ENST00000294485.5	3.726	0.497	1.051	0.173(1654)	0.014(10)	0.166(2889)	non tumor-specific	nAS	yes
REV3L_LS029	chr6:111387913|111388001:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	ENST00000434009.5;ENST00000368802.7;ENST00000368805.5;ENST00000422377.5;ENST00000435970.5;ENST00000358835.7;ENST00000470871.1	3.584	3.044	3.527	0.673(6447)	0.855(600)	0.84(14608)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MGRN1_LS0100	chr16:4690076|4690183:-	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	2.971	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
VSIG10L_LS006	chr19:51339142|51339664:-	VSIG10L	V-set and immunoglobulin domain containing 10 like	protein coding gene	no	ENST00000600663.1	0.716	0.402	0.700	0.084(808)	0.101(71)	0.155(2700)	non tumor-specific	alt_5prime	yes
MYO9B_LS049	chr19:17210380|17210715:+	MYO9B	myosin IXB	protein coding gene	no	ENST00000595618.5;ENST00000594824.5;ENST00000397274.6;ENST00000597073.5;ENST00000598419.1	61.981	26.283	48.195	0.985(9441)	0.994(698)	0.963(16745)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CUTC_LS001	chr10:99702673|99722918:+	CUTC	cutC copper transporter	protein coding gene	no	ENST00000493385.5	0.509	0.309	0.691	0.177(1698)	0.217(152)	0.124(2155)	non tumor-specific	nAS	yes
CLEC16A_LS013	chr16:11003305|11020193:+	CLEC16A	C-type lectin domain containing 16A	protein coding gene	no	ENST00000409790.5;ENST00000494853.1	7.854	5.627	3.576	0.681(6520)	0.779(547)	0.924(16064)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TCEAL3_LS0009	chrX:103610607|103628406:+	TCEAL3	transcription elongation factor A like 3	protein coding gene	no	.	0.712	0.277	0.000	0.004(34)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
FER1L4_LS044	chr20:35602607|35602689:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	ENST00000615531.4;ENST00000430275.6	6.608	2.160	1.723	0.15(1435)	0.047(33)	0.654(11375)	non tumor-specific	nAS	yes
ATP8B2_LS022	chr1:154343568|154343893:+	ATP8B2	ATPase phospholipid transporting 8B2	protein coding gene	no	ENST00000368489.3	25.480	16.751	30.078	0.906(8681)	0.957(672)	0.977(16986)	non tumor-specific	alt_5prime	yes
FMR1_LS034	chrX:147943326|147944905:+	FMR1	FMRP translational regulator 1	protein coding gene	no	ENST00000370477.5	1.084	0.883	2.833	0.909(8708)	0.962(675)	0.912(15850)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PHF19_LS0045	chr9:120874756|120878614:-	PHF19	PHD finger protein 19	protein coding gene	no	.	2.297	0.068	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
NOL3_LS022	chr16:67174944|67175047:+	NOL3	nucleolar protein 3	protein coding gene	no	ENST00000268605.11;ENST00000564053.5;ENST00000566871.5;ENST00000568503.1;ENST00000563258.1;ENST00000568146.1	40.055	20.214	74.794	0.957(9165)	0.979(687)	0.978(17002)	non tumor-specific	alt_5prime	yes
UN_AC006453.4_UP_LS0092	chr2:88861927|89221700:+	AC006453.4	-	pseudogene	no	.	97.891	0.355	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGB2_LS021	chr21:44907095|44908074:-	ITGB2	integrin subunit beta 2	protein coding gene	no	ENST00000520389.5	0.068	0.230	0.801	0.268(2565)	0.305(214)	0.049(848)	non tumor-specific	alt_5prime;exon_skip	yes
PDS5A_LS031	chr4:39904191|39908395:-	PDS5A	PDS5 cohesin associated factor A	protein coding gene	no	ENST00000303538.12;ENST00000503396.5;ENST00000512643.1;ENST00000503867.1	26.700	17.870	18.332	0.987(9454)	0.994(698)	0.976(16967)	non tumor-specific	alt_5prime	yes
RCE1_LS002	chr11:66843861|66843956:+	RCE1	symbol withdrawn, see [HGNC:13721](/data/gene-symbol-report/#!/hgnc_id/HGNC:13721)	protein coding gene	no	ENST00000533277.5;ENST00000309657.7;ENST00000524506.5	10.949	5.986	13.387	0.991(9497)	0.994(698)	0.977(16979)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RASSF1_LS002	chr3:50331449|50331559:-	RASSF1	Ras association domain family member 1	protein coding gene	yes	ENST00000327761.7;ENST00000616212.4;ENST00000395126.7;ENST00000357043.6;ENST00000395117.6;ENST00000359365.8;ENST00000482447.1	66.859	35.987	83.416	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_AC098588.2_LS0004	chr4:144201978|144206021:-	AC098588.2	-	lncRNA gene	no	.	3.454	0.775	0.000	0.007(68)	0.031(22)	0(0)	non tumor-specific	nAS	no
IMPDH1_LS010	chr7:128394998|128395131:-	IMPDH1	inosine monophosphate dehydrogenase 1	protein coding gene	no	ENST00000460045.1	0.650	0.140	1.219	0.624(5980)	0.467(328)	0.64(11132)	non tumor-specific	alt_3prime;alt_5prime	yes
TBC1D27P_LS005	chr17:16926953|16927678:-	TBC1D27P	TBC1 domain family member 27, pseudogene	pseudogene	no	ENST00000261651.6	2.809	1.173	1.187	0.001(9)	0.001(1)	0.047(815)	non tumor-specific	nAS	yes
UN_NIPA1_LS0030	chr15:22812253|22819288:+	NIPA1	NIPA magnesium transporter 1	protein coding gene	no	.	1.783	0.100	0.000	0.009(85)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PPP1CB_LS0004	chr2:28752173|28781802:+	PPP1CB	protein phosphatase 1 catalytic subunit beta	protein coding gene	no	.	6.460	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
LIN52_LS008	chr14:74091306|74095948:+	LIN52	lin-52 DREAM MuvB core complex component	protein coding gene	no	ENST00000555028.5;ENST00000553404.5;ENST00000554076.5;ENST00000554289.1	11.123	8.082	8.417	0.93(8910)	0.976(685)	0.965(16769)	non tumor-specific	alt_3prime;exon_skip	yes
AC124067.1_LS001	chr8:37480219|37480772:+	AC124067.1	-	lncRNA gene	no	ENST00000517897.1	0.066	0.000	0.572	0(4)	0(0)	0(6)	non tumor-specific	nAS	yes
SPAG1_LS012	chr8:100194268|100213090:+	SPAG1	sperm associated antigen 1	protein coding gene	no	ENST00000251809.4;ENST00000388798.6	1.957	1.326	1.152	0.545(5218)	0.722(507)	0.5(8690)	non tumor-specific	nAS	yes
UN_PRDM11_LS0036	chr11:45204778|45209057:+	PRDM11	PR/SET domain 11	protein coding gene	yes	.	1.139	0.264	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL158066.1_LS0017	chr13:52235281|52279841:-	AL158066.1	-	lncRNA gene	no	.	3.080	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SFPQ_LS0114	chr1:35192832|35192878:+	SFPQ	splicing factor proline and glutamine rich	protein coding gene	yes	.	2.979	0.295	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C1GALT1_UP_LS0010	chr7:6990760|7037303:+	C1GALT1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein coding gene	no	.	0.785	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL121885.3_UP_LS0012	chr22:27654999|27677530:+	AL121885.3	-	lncRNA gene	no	.	3.048	0.091	0.000	0.025(239)	0.004(3)	0(0)	non tumor-specific	nAS	no
LAMP2_LS010	chrX:120448025|120448970:-	LAMP2	lysosomal associated membrane protein 2	protein coding gene	no	ENST00000434600.6;ENST00000200639.8;ENST00000486593.5;ENST00000371335.4	278.180	181.765	79.344	0.995(9534)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_PRKY_LS0021	chrY:7290657|7303937:+	PRKY	protein kinase Y-linked (pseudogene)	pseudogene	no	.	1.771	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GOLGA3_LS0100	chr12:132808544|132813307:-	GOLGA3	golgin A3	protein coding gene	no	.	3.774	0.704	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_ZNF385B_LS0061	chr2:179770672|179779617:-	ZNF385B	zinc finger protein 385B	protein coding gene	no	.	0.612	0.087	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
LCTL_LS006	chr15:66553258|66557722:-	LCTL	lactase like	protein coding gene	no	ENST00000341509.9;ENST00000537670.5;ENST00000565875.5	2.776	0.000	1.980	0.065(625)	0(0)	0.22(3824)	non tumor-specific	exon_skip	yes
FAM177A1_LS025	chr14:35081559|35099652:+	FAM177A1	family with sequence similarity 177 member A1	protein coding gene	no	ENST00000555260.1	0.224	0.057	0.657	0.092(879)	0.061(43)	0.032(550)	non tumor-specific	exon_skip;mutex_exons	yes
CEP250_LS022	chr20:35473552|35473870:+	CEP250	centrosomal protein 250	protein coding gene	no	ENST00000397527.5;ENST00000461386.5;ENST00000425934.5	8.468	3.957	3.995	0.773(7404)	0.699(491)	0.92(15985)	non tumor-specific	intron_retention	yes
GCFC2_LS010	chr2:75672016|75673444:-	GCFC2	GC-rich sequence DNA-binding factor 2	protein coding gene	no	ENST00000470197.5;ENST00000321027.7;ENST00000541687.5;ENST00000409857.7;ENST00000427862.1;ENST00000472230.5	34.409	20.736	21.308	0.982(9412)	0.994(698)	0.977(16982)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GALNT5_UP_LS0013	chr2:156841588|156864123:+	GALNT5	polypeptide N-acetylgalactosaminyltransferase 5	protein coding gene	no	.	1.503	0.268	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
PRPF6_LS002	chr20:63981316|63983130:+	PRPF6	pre-mRNA processing factor 6	protein coding gene	no	.;.	30.726	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SNX18P4_UP_LS0002	chr9:66084557|66086099:-	SNX18P4	sorting nexin 18 pseudogene 4	pseudogene	no	.	3.221	0.062	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC52A2_LS0010	chr8:144355638|144356072:+	SLC52A2	solute carrier family 52 member 2	protein coding gene	no	.	3.690	0.844	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
BAZ2A_LS047	chr12:56617532|56636182:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	ENST00000379441.7;ENST00000551812.5	0.876	0.669	2.302	0.488(4675)	0.54(379)	0.795(13821)	non tumor-specific	exon_skip	yes
SLC29A3_LS016	chr10:71375811|71379766:+	SLC29A3	solute carrier family 29 member 3	protein coding gene	no	ENST00000644895.1;ENST00000642772.1	2.168	0.643	0.000	0.018(173)	0.028(20)	0(0)	non tumor-specific	nAS	yes
SLC30A6_LS015	chr2:32187303|32192336:+	SLC30A6	solute carrier family 30 member 6	protein coding gene	no	ENST00000457724.2	0.095	0.107	0.565	0.166(1594)	0.158(111)	0.01(166)	non tumor-specific	exon_skip	yes
UN_GALNT15_UP_LS0022	chr3:15947228|16137391:+	GALNT15	polypeptide N-acetylgalactosaminyltransferase like 5	protein coding gene	no	.	2.572	0.136	0.000	0.007(70)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC092155.1_LS003	chr2:62612391|62613606:-	AC092155.1	-	lncRNA gene	no	ENST00000416111.1	3.068	0.518	0.695	0(1)	0.001(1)	0.025(433)	non tumor-specific	nAS	yes
UN_CD2BP2_LS0041	chr16:30353762|30354201:+	CD2BP2	CD2 cytoplasmic tail binding protein 2	protein coding gene	no	.	2.781	0.347	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
FER1L6_LS022	chr8:124049756|124060180:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	5.246	5.228	0.999	0.098(937)	0.319(224)	0.095(1644)	non tumor-specific	exon_skip	yes
UN_WASHC2C_LS0022	chr10:45765810|45773256:+	WASHC2C	WASH complex subunit 2C	protein coding gene	no	.	2.850	0.289	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SMARCAD1_LS025	chr4:94277159|94278422:+	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein coding gene	no	ENST00000359052.8;ENST00000457823.6;ENST00000354268.8;ENST00000394961.6;ENST00000509418.1	27.840	16.141	17.582	0.952(9119)	0.983(690)	0.968(16834)	non tumor-specific	exon_skip	yes
ABCA7_LS014	chr19:1043473|1043725:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	9.200	3.668	8.560	0.736(7056)	0.754(529)	0.959(16674)	non tumor-specific	alt_3prime	yes
OCEL1_LS020	chr19:17228309|17229009:+	OCEL1	occludin/ELL domain containing 1	protein coding gene	no	ENST00000600232.5;ENST00000599286.1;ENST00000600232.5;ENST00000599286.1	1.444	2.055	8.621	0.954(9138)	0.969(680)	0.963(16739)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF652_LS006	chr17:49312042|49312698:-	ZNF652	zinc finger protein 652	protein coding gene	no	ENST00000508237.5;ENST00000362063.6;ENST00000430262.2	8.306	5.063	4.234	0.85(8145)	0.923(648)	0.951(16528)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DAD1_LS0010	chr14:22575233|22580829:-	DAD1	defender against cell death 1	protein coding gene	no	.	3.572	0.461	0.000	0.031(300)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_CD38_UP_LS0004	chr4:15774247|15774502:+	CD38	CD38 molecule	protein coding gene	no	.	3.105	0.100	0.000	0.007(64)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_KLF3_LS0028	chr4:38697280|38697324:-	KLF3	Kruppel like factor 3	protein coding gene	no	.	2.466	0.755	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_DTNBP1_UP_LS0027	chr6:15825656|15826669:-	DTNBP1	dystrobrevin binding protein 1	protein coding gene	no	.	3.449	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF44_LS0041	chr19:12274064|12274969:-	ZNF44	zinc finger protein 44	protein coding gene	no	.	2.477	0.465	0.000	0.033(314)	0.05(35)	0(0)	non tumor-specific	nAS	no
MICA_LS003	chr6:31400763|31411209:+	MICA	MHC class I polypeptide-related sequence A	protein coding gene	no	.;.	8.200	1.857	0.000	0.006(61)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ITCH_LS015	chr20:34440344|34442208:+	ITCH	itchy E3 ubiquitin protein ligase	protein coding gene	no	ENST00000374864.8;ENST00000535650.7;ENST00000262650.10	20.268	16.378	16.575	0.945(9053)	0.984(691)	0.977(16990)	non tumor-specific	exon_skip	yes
UN_PUM3_LS0021	chr9:2782846|2804239:-	PUM3	pumilio RNA binding family member 3	protein coding gene	no	.	2.292	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02268_LS0008	chr4:174097829|174114181:-	LINC02268	long intergenic non-protein coding RNA 2268	lncRNA gene	no	.	2.592	0.340	0.000	0.008(79)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_SUSD4_LS0010	chr1:223248930|223251219:+	SUSD4	sushi domain containing 4	protein coding gene	no	.	3.099	0.856	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC00607_UP_LS0006	chr2:215886420|215916960:-	LINC00607	long intergenic non-protein coding RNA 607	lncRNA gene	no	.	10.039	0.273	0.000	0.001(14)	0.009(6)	0(0)	non tumor-specific	nAS	no
PFKM_LS005	chr12:48105810|48122767:+	PFKM	phosphofructokinase, muscle	protein coding gene	no	ENST00000550924.6;ENST00000550924.6	0.033	0.023	0.729	0.492(4718)	0.533(374)	0.184(3191)	non tumor-specific	alt_5prime;exon_skip	yes
UN_METRNL_LS0041	chr17:83084851|83084938:+	METRNL	meteorin like, glial cell differentiation regulator	protein coding gene	no	.	1.130	0.372	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_GZMM_LS0003	chr19:546963|547280:+	GZMM	granzyme M	protein coding gene	no	.	1.152	0.163	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
IGFBP3_LS003	chr7:45914548|45914805:-	IGFBP3	insulin like growth factor binding protein 3	protein coding gene	yes	ENST00000428530.5	0.073	0.486	0.663	0.158(1516)	0.111(78)	0.105(1823)	non tumor-specific	intron_retention	yes
PLEKHG5_LS006	chr1:6467893|6469042:-	PLEKHG5	pleckstrin homology and RhoGEF domain containing G5	protein coding gene	no	ENST00000377740.4;ENST00000377740.4	0.194	0.243	1.001	0.216(2068)	0.239(168)	0.326(5675)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TPST1_LS0124	chr7:66401394|66407290:-	TPST1	tyrosylprotein sulfotransferase 1	protein coding gene	no	.	1.210	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
TM7SF3_LS012	chr12:26979936|26980566:-	TM7SF3	transmembrane 7 superfamily member 3	protein coding gene	no	ENST00000343028.8;ENST00000545344.5;ENST00000535260.5	48.786	32.973	35.570	0.994(9521)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
SRRM3_LS011	chr7:76267435|76281441:+	SRRM3	serine/arginine repetitive matrix 3	protein coding gene	no	ENST00000611745.1	1.468	0.017	1.298	0.013(127)	0.004(3)	0.063(1093)	non tumor-specific	nAS	yes
ZNF423_LS006	chr16:49638874|49664091:-	ZNF423	zinc finger protein 423	protein coding gene	no	ENST00000535559.5	0.845	0.898	1.396	0.334(3197)	0.551(387)	0.485(8424)	non tumor-specific	nAS	yes
LGALS9_LS030	chr17:27647432|27648836:+	LGALS9	galectin 9	protein coding gene	no	ENST00000395473.6;ENST00000302228.9;ENST00000467111.5;ENST00000481514.5;ENST00000486774.1	177.914	96.042	32.222	0.986(9448)	0.991(696)	0.974(16928)	non tumor-specific	alt_5prime;exon_skip	yes
JAK2_LS011	chr9:5050831|5054563:+	JAK2	Janus kinase 2	protein coding gene	yes	ENST00000636127.1;ENST00000381652.3	10.080	7.906	10.172	0.779(7464)	0.922(647)	0.956(16613)	non tumor-specific	nAS	yes
SNHG5_LS004	chr6:85663726|85666004:-	SNHG5	small nucleolar RNA host gene 5	lncRNA gene	no	ENST00000623163.3;ENST00000623901.3;ENST00000650155.1;ENST00000589187.5	0.180	0.134	1.699	0.2(1916)	0.349(245)	0.679(11801)	non tumor-specific	nAS	yes
UN_SERPINB13_LS0004	chr18:63588981|63589656:+	SERPINB13	serpin family B member 13	protein coding gene	no	.	2.692	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
TMC1_LS024	chr9:72792352|72805382:+	TMC1	transmembrane channel like 1	protein coding gene	no	ENST00000297784.9;ENST00000645208.1;ENST00000645053.1;ENST00000645773.1;ENST00000340019.4;ENST00000644967.1;ENST00000646619.1;ENST00000486417.5	1.926	0.428	0.891	0.016(151)	0.04(28)	0.095(1645)	non tumor-specific	exon_skip	yes
DIAPH1_LS036	chr5:141578343|141578515:-	DIAPH1	diaphanous related formin 1	protein coding gene	no	ENST00000389054.7;ENST00000647433.1;ENST00000253811.10;ENST00000389057.9;ENST00000398557.8;ENST00000518047.5;ENST00000647330.1;ENST00000523100.5;ENST00000472516.1	69.905	45.142	29.380	0.977(9358)	0.99(695)	0.976(16972)	non tumor-specific	nAS	yes
USP5_LS006	chr12:6856450|6856707:+	USP5	ubiquitin specific peptidase 5	protein coding gene	no	ENST00000229268.12;ENST00000389231.9	79.634	46.264	52.001	0.993(9514)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
ANKRD31_LS023	chr5:75199674|75206411:-	ANKRD31	ankyrin repeat domain 31	protein coding gene	no	ENST00000506364.6;ENST00000274361.3	3.742	1.495	0.691	0.003(30)	0.014(10)	0.119(2066)	non tumor-specific	nAS	yes
ZNF577_LS014	chr19:51878515|51880323:-	ZNF577	zinc finger protein 577	protein coding gene	no	ENST00000638827.1;ENST00000640955.1;ENST00000301399.11;ENST00000639636.1;ENST00000451628.8;ENST00000638348.1;ENST00000638325.1;ENST00000638814.1;ENST00000638538.1;ENST00000638423.1	4.506	3.415	22.717	0.915(8767)	0.966(678)	0.967(16803)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_LTN1_LS0011	chr21:28946284|28947464:-	LTN1	listerin E3 ubiquitin protein ligase 1	protein coding gene	no	.	1.774	0.920	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
ALDH18A1_LS019	chr10:95653405|95656446:-	ALDH18A1	aldehyde dehydrogenase 18 family member A1	protein coding gene	no	ENST00000483788.1	0.265	0.275	1.195	0.822(7872)	0.872(612)	0.574(9970)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF714_LS011	chr19:21098311|21116829:+	ZNF714	zinc finger protein 714	protein coding gene	no	ENST00000618422.1;ENST00000618422.1	0.003	0.014	0.621	0.071(681)	0.044(31)	0.031(538)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COL16A1_LS0038	chr1:31669400|31669739:-	COL16A1	collagen type XVI alpha 1 chain	protein coding gene	no	.	3.269	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ESCO1_LS014	chr18:21593488|21596953:-	ESCO1	establishment of sister chromatid cohesion N-acetyltransferase 1	protein coding gene	no	ENST00000580101.1	0.702	0.061	0.665	0.035(336)	0.011(8)	0.092(1597)	non tumor-specific	exon_skip	yes
UN_ZNF254_LS0010	chr19:24034712|24036253:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	1.085	0.192	0.000	0.006(55)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
AC126755.2_LS001	chr16:18358588|18359382:-	AC126755.2	-	protein coding gene	no	ENST00000545114.5	0.672	0.553	0.692	0.898(8600)	0.838(588)	0.098(1707)	non tumor-specific	alt_3prime;exon_skip	yes
ADGRB3_LS032	chr6:69372441|69382831:+	ADGRB3	adhesion G protein-coupled receptor B3	protein coding gene	no	ENST00000370598.5;ENST00000546190.5;ENST00000238918.12	10.688	7.828	4.590	0.159(1526)	0.325(228)	0.798(13879)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RFTN2_LS0002	chr2:197572277|197595991:-	RFTN2	raftlin family member 2	protein coding gene	no	.	6.193	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	alt_3prime	no
VAX2_LS013	chr2:70960078|70960921:+	VAX2	ventral anterior homeobox 2	protein coding gene	no	ENST00000432367.6;ENST00000646783.1	38.109	32.880	2.641	0.672(6436)	0.664(466)	0.723(12570)	non tumor-specific	exon_skip	yes
MYRF_LS017	chr11:61779570|61779842:+	MYRF	myelin regulatory factor	protein coding gene	no	ENST00000278836.9;ENST00000265460.9;ENST00000389602.4;ENST00000536352.5;ENST00000537318.5	22.015	21.795	4.510	0.633(6063)	0.671(471)	0.746(12968)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HDGF_LS0104	chr1:156742967|156743016:+	HDGF	heparin binding growth factor	protein coding gene	no	.	6.157	0.141	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
CEP120_LS014	chr5:123386667|123388432:-	CEP120	centrosomal protein 120	protein coding gene	no	ENST00000306467.9;ENST00000328236.9;ENST00000306481.10;ENST00000508138.5;ENST00000508442.6	12.333	9.201	8.512	0.904(8664)	0.974(684)	0.964(16752)	non tumor-specific	alt_5prime	yes
UN_IDH1_LS0027	chr2:208253959|208254943:-	IDH1	isocitrate dehydrogenase (NADP(+)) 1	protein coding gene	yes	.	32.003	0.582	0.000	0.003(30)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
SYCP1_LS036	chr1:114994787|114994882:+	SYCP1	synaptonemal complex protein 1	protein coding gene	no	ENST00000369522.7;ENST00000618516.4;ENST00000613524.4;ENST00000369518.1;ENST00000477590.1	2.292	0.012	0.762	0.016(157)	0.009(6)	0.093(1616)	non tumor-specific	nAS	yes
UN_AC005186.1_LS0008	chr12:126013543|126030565:+	AC005186.1	-	lncRNA gene	no	.	2.368	0.086	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF100_LS002	chr19:21743223|21744017:-	ZNF100	zinc finger protein 100	protein coding gene	no	ENST00000598026.1	0.158	0.100	0.698	0.207(1983)	0.219(154)	0.118(2045)	non tumor-specific	nAS	yes
CLCN6_LS011	chr1:11826214|11827089:+	CLCN6	chloride voltage-gated channel 6	protein coding gene	no	ENST00000312413.10;ENST00000346436.10;ENST00000400892.3;ENST00000376496.4;ENST00000376492.3	3.598	3.488	11.500	0.812(7782)	0.902(633)	0.97(16863)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC018557.1_LS001	chr16:66721990|66731090:+	AC018557.1	-	lncRNA gene	no	ENST00000569274.1	0.023	0.024	0.665	0.89(8523)	0.906(636)	0.054(937)	non tumor-specific	nAS	yes
UN_JUN_LS0013	chr1:58782081|58782555:+	JUN	Jun proto-oncogene, AP-1 transcription factor subunit	protein coding gene	yes	.	3.668	0.758	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
HLA-J_LS008	chr6:30008462|30009038:+	HLA-J	major histocompatibility complex, class I, J (pseudogene)	pseudogene	no	ENST00000469281.5;ENST00000495278.5	0.201	0.059	1.256	0.135(1290)	0.174(122)	0.476(8281)	non tumor-specific	nAS	yes
NFRKB_LS001	chr11:129864850|129864966:-	NFRKB	nuclear factor related to kappaB binding protein	protein coding gene	no	ENST00000446488.7;ENST00000524794.5;ENST00000524746.5	33.151	18.296	36.458	0.985(9442)	0.991(696)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GPD1L_LS006	chr3:32128253|32140228:+	GPD1L	glycerol-3-phosphate dehydrogenase 1 like	protein coding gene	no	ENST00000425459.5	0.388	0.167	1.146	0.538(5157)	0.738(518)	0.483(8394)	non tumor-specific	alt_5prime;exon_skip	yes
CASTOR2_LS008	chr7:75024534|75024634:+	CASTOR2	cytosolic arginine sensor for mTORC1 subunit 2	protein coding gene	no	ENST00000616305.1	4.403	2.022	4.768	0.739(7084)	0.729(512)	0.954(16589)	non tumor-specific	nAS	yes
UN_EPHX1_LS0051	chr1:225842426|225844555:-	EPHX1	epoxide hydrolase 1	protein coding gene	no	.	3.799	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DGCR8_LS0012	chr22:20091014|20091435:+	DGCR8	DGCR8 microprocessor complex subunit	protein coding gene	no	.	3.437	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_CBR3_LS0008	chr21:36137302|36146256:-	CBR3	carbonyl reductase 3	protein coding gene	no	.	0.605	0.064	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
PYGM_LS003	chr11:64747358|64750376:-	PYGM	glycogen phosphorylase, muscle associated	protein coding gene	no	ENST00000377432.7;ENST00000164139.3	6.414	18.081	23.798	0.389(3728)	0.768(539)	0.964(16762)	non tumor-specific	exon_skip	yes
TSPOAP1-AS1_LS009	chr17:58337679|58351744:+	TSPOAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	lncRNA gene	no	ENST00000579527.5;ENST00000578334.5;ENST00000580633.5;ENST00000583826.5;ENST00000585236.5	0.714	0.826	2.005	0.253(2423)	0.355(249)	0.22(3821)	non tumor-specific	nAS	yes
UN_AL354854.1_UP_LS0002	chr9:31230654|31233747:-	AL354854.1	-	pseudogene	no	.	1.885	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SPNS2_LS003	chr17:4525193|4530632:+	SPNS2	sphingolipid transporter 2	protein coding gene	no	ENST00000329078.7	19.722	34.851	21.050	0.828(7937)	0.963(676)	0.943(16394)	non tumor-specific	exon_skip	yes
UN_ZNF768_LS0046	chr16:30525081|30525166:+	ZNF768	zinc finger protein 768	protein coding gene	no	.	5.804	0.870	0.000	0.017(165)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC087362.1_LS001	chr8:38336185|38337323:+	AC087362.1	-	lncRNA gene	no	ENST00000527912.1	0.044	0.056	0.711	0.38(3640)	0.489(343)	0.153(2659)	non tumor-specific	nAS	yes
UN_CD27_LS0028	chr12:6450980|6451110:-	CD27	CD27 molecule	protein coding gene	no	.	4.074	0.620	0.000	0.014(137)	0.016(11)	0(0)	non tumor-specific	nAS	no
TTTY2B_LS004	chrY:6411530|6412223:-	TTTY2B	testis-specific transcript, Y-linked 2B	lncRNA gene	no	ENST00000450591.1	3.640	0.032	0.623	0.002(21)	0.001(1)	0(4)	non tumor-specific	nAS	yes
AC139749.1_LS001	chr11:1049962|1051623:+	AC139749.1	-	lncRNA gene	no	ENST00000534584.2	1.653	0.929	1.231	0.125(1199)	0.256(180)	0.399(6927)	non tumor-specific	nAS	yes
DMGDH_LS006	chr5:79028650|79029904:-	DMGDH	dimethylglycine dehydrogenase	protein coding gene	no	ENST00000255189.7;ENST00000523732.1;ENST00000518477.5;ENST00000517853.5;ENST00000523201.1	10.458	40.850	3.121	0.349(3339)	0.627(440)	0.804(13981)	non tumor-specific	exon_skip	yes
UN_AC009120.2_LS0008	chr16:74305580|74331587:-	AC009120.2	-	lncRNA gene	no	.	2.179	0.405	0.000	0.016(149)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_ZNF488_LS0012	chr10:47379626|47379723:-	ZNF488	zinc finger protein 488	protein coding gene	no	.	1.043	0.069	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TYK2_LS0021	chr19:10353646|10354068:-	TYK2	tyrosine kinase 2	protein coding gene	no	.	14.482	2.556	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_AC068831.5_LS0001	chr15:91031440|91031521:-	AC068831.5	-	pseudogene	no	.	3.500	0.269	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MYH10_LS0037	chr17:8509088|8513220:+	MYH10	myosin heavy chain 10	protein coding gene	no	.	2.130	0.553	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AF241726.2_LS0063	chrX:37792059|37795951:+	AF241726.2	-	protein coding gene	no	.	1.710	0.233	0.000	0.014(138)	0.014(10)	0(0)	non tumor-specific	nAS	no
ANKRD36C_LS050	chr2:95916171|95917855:-	ANKRD36C	ankyrin repeat domain 36C	protein coding gene	no	ENST00000456556.5;ENST00000534304.5;ENST00000295246.6	2.682	0.190	1.380	0.092(882)	0.071(50)	0.608(10563)	non tumor-specific	exon_skip	yes
EP400P1_LS029	chr12:132125408|132125854:+	EP400P1	EP400 pseudogene 1	pseudogene	no	ENST00000332441.7	1.279	0.517	0.830	0.119(1143)	0.093(65)	0.392(6807)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LMLN_LS0028	chr3:198031513|198035833:+	LMLN	leishmanolysin like peptidase	protein coding gene	no	.	0.875	0.036	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CALML3_LS0021	chr10:5525601|5525653:-	CALML3	calmodulin like 3	protein coding gene	no	.	11.052	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKAR2A-AS1_UP_LS0004	chr3:48687796|48688492:+	PRKAR2A-AS1	PRKAR2A antisense RNA 1	lncRNA gene	no	.	1.347	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
FUBP1_LS006	chr1:77945642|77946530:-	FUBP1	far upstream element binding protein 1	protein coding gene	yes	ENST00000474632.5;ENST00000489495.5;ENST00000488814.5;ENST00000492405.5	10.940	3.575	27.017	0.945(9050)	0.883(620)	0.976(16965)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DPEP1_LS0026	chr16:89637971|89638057:+	DPEP1	dipeptidase 1	protein coding gene	no	.	32.166	35.218	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_GPATCH2L_UP_LS0002	chr14:76101713|76115690:+	GPATCH2L	G-patch domain containing 2 like	protein coding gene	no	.	3.244	0.515	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHMP2B_LS009	chr3:87245908|87249875:+	CHMP2B	charged multivesicular body protein 2B	protein coding gene	no	ENST00000471660.5;ENST00000263780.8;ENST00000472024.2	73.033	66.144	64.994	0.996(9540)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_C22orf39_LS0052	chr22:19410778|19431079:-	C22orf39	chromosome 22 open reading frame 39	protein coding gene	no	.	1.136	1.156	0.000	0.005(52)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC005726.1_LS0179	chr17:28578528|28578611:-	AC005726.1	-	protein coding gene	no	.	6.092	0.692	0.000	0.016(150)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_NFIC_LS0106	chr19:3464645|3464691:-	NFIC	nuclear factor I C	protein coding gene	no	.	6.849	0.355	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SETD2_LS0044	chr3:47079611|47080867:-	SETD2	SET domain containing 2, histone lysine methyltransferase	protein coding gene	yes	.	2.764	0.398	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_RPL23AP35_UP_LS0009	chr2:186344639|186456715:-	RPL23AP35	ribosomal protein L23a pseudogene 35	pseudogene	no	.	1.076	0.305	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC010928.1_LS004	chr18:60642068|60643532:+	AC010928.1	-	pseudogene	no	ENST00000589354.1	3.023	0.000	0.638	0(3)	0(0)	0.001(10)	non tumor-specific	nAS	yes
UN_RPSAP68_UP_LS0308	chr21:8399412|8443536:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	977.327	90.580	0.000	0.031(297)	0.02(14)	0(0)	non tumor-specific	nAS	no
TRAF4_LS001	chr17:28744255|28744701:+	TRAF4	TNF receptor associated factor 4	protein coding gene	no	ENST00000478021.1	0.114	0.006	0.748	0.09(861)	0.048(34)	0.158(2749)	non tumor-specific	alt_3prime;exon_skip	yes
UTS2B_LS005	chr3:191275345|191278072:-	UTS2B	urotensin 2B	protein coding gene	no	ENST00000440476.5;ENST00000425357.1	1.877	0.214	0.704	0.026(253)	0.021(15)	0.06(1050)	non tumor-specific	exon_skip	yes
UN_GSE1_LS0142	chr16:85633904|85633996:-	GSE1	Gse1 coiled-coil protein	protein coding gene	no	.	2.049	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CSMD3_LS055	chr8:112650349|112656154:-	CSMD3	CUB and Sushi multiple domains 3	protein coding gene	no	ENST00000343508.7;ENST00000297405.9;ENST00000339701.7;ENST00000455883.2	3.688	0.139	1.015	0.042(402)	0.004(3)	0.073(1277)	non tumor-specific	nAS	yes
SZT2_LS038	chr1:43428486|43429703:+	SZT2	SZT2 subunit of KICSTOR complex	protein coding gene	no	ENST00000634258.2;ENST00000562955.2	8.622	5.435	9.352	0.778(7454)	0.879(617)	0.964(16762)	non tumor-specific	alt_3prime	yes
UN_NPSR1-AS1_LS0023	chr7:34652635|34653657:-	NPSR1-AS1	NPSR1 antisense RNA 1	lncRNA gene	no	.	5.557	0.094	0.000	0.042(402)	0.001(1)	0(0)	non tumor-specific	nAS	no
USP22_LS005	chr17:21006987|21007870:-	USP22	ubiquitin specific peptidase 22	protein coding gene	yes	ENST00000261497.8;ENST00000537526.6;ENST00000579645.5;ENST00000478443.1	135.102	104.498	77.838	0.99(9482)	0.994(698)	0.979(17021)	non tumor-specific	nAS	yes
ITGA2B_LS018	chr17:44380153|44380246:-	ITGA2B	integrin subunit alpha 2b	protein coding gene	no	ENST00000648408.1;ENST00000262407.5;ENST00000592462.5;ENST00000592226.5	1.199	0.649	2.200	0.213(2042)	0.226(159)	0.708(12302)	non tumor-specific	nAS	yes
UN_SRGAP2B_LS0019	chr1:144995200|145067027:-	SRGAP2B	SLIT-ROBO Rho GTPase activating protein 2B	protein coding gene	no	.	1.557	0.086	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
ETFA_LS029	chr15:76295737|76311350:-	ETFA	electron transfer flavoprotein subunit alpha	protein coding gene	no	ENST00000557943.5;ENST00000267950.12;ENST00000560595.5;ENST00000559075.5;ENST00000559386.1;ENST00000561092.1	34.448	37.565	48.053	0.976(9347)	0.977(686)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_ARMCX5-GPRASP2_LS0007	chrX:102605653|102649954:+	ARMCX5-GPRASP2	ARMCX5-GPRASP2 readthrough	lncRNA gene	no	.	2.754	0.992	0.000	0.025(242)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_PTK2B_LS0042	chr8:27440436|27442674:-	PTK2B	protein tyrosine kinase 2 beta	protein coding gene	yes	.	1.249	0.470	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
PPP1R13L_LS014	chr19:45396436|45398005:-	PPP1R13L	protein phosphatase 1 regulatory subunit 13 like	protein coding gene	yes	.;.	2.023	0.224	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRDX6_LS0001	chr1:173477492|173478533:+	PRDX6	peroxiredoxin 6	protein coding gene	no	.	3.725	0.319	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_ITGB5_LS0016	chr3:124763458|124763497:+	ITGB5	integrin subunit beta 5	protein coding gene	no	.	6.280	1.427	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC008687.2_UP_LS0001	chr19:49024044|49055449:+	AC008687.2	-	lncRNA gene	no	.	11.050	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AFM_LS0003	chr4:73485677|73485862:+	AFM	afamin	protein coding gene	no	.	4.158	5.777	0.000	0.006(61)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_PEX6_LS0007	chr6:42964227|42964800:+	PEX6	peroxisomal biogenesis factor 6	protein coding gene	no	.	1.417	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PNPLA7_LS001	chr9:137460476|137460634:-	PNPLA7	patatin like phospholipase domain containing 7	protein coding gene	no	ENST00000492278.5;ENST00000469998.1;ENST00000277531.8;ENST00000406427.5	15.429	13.790	54.096	0.637(6107)	0.88(618)	0.975(16951)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RNU6-1313P_UP_LS0002	chr17:49977270|49980542:-	RNU6-1313P	RNA, U6 small nuclear 1313, pseudogene	small non-coding RNA gene	no	.	1.548	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TIMD4_LS002	chr5:156920503|156922099:-	TIMD4	T cell immunoglobulin and mucin domain containing 4	protein coding gene	no	ENST00000274532.6;ENST00000406964.5;ENST00000407087.4	12.497	4.622	1.362	0.279(2670)	0.443(311)	0.469(8159)	non tumor-specific	alt_5prime	yes
PTGES2_LS001	chr9:128121273|128122362:-	PTGES2	prostaglandin E synthase 2	protein coding gene	no	ENST00000338961.10;ENST00000617202.4;ENST00000277462.9;ENST00000496594.5;ENST00000476655.5;ENST00000493205.5	149.923	73.066	113.355	0.967(9264)	0.979(687)	0.979(17021)	non tumor-specific	exon_skip	yes
BTBD6_LS004	chr14:105249085|105249360:+	BTBD6	BTB domain containing 6	protein coding gene	no	.;.;.	0.816	0.090	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SGSH_LS005	chr17:80207685|80212071:-	SGSH	N-sulfoglucosamine sulfohydrolase	protein coding gene	no	ENST00000572257.5	0.429	0.134	0.873	0.253(2420)	0.164(115)	0.357(6206)	non tumor-specific	exon_skip	yes
NCEH1_LS007	chr3:172648114|172710847:-	NCEH1	neutral cholesterol ester hydrolase 1	protein coding gene	no	ENST00000475381.5;ENST00000538775.5;ENST00000424772.1	11.933	12.263	3.108	0.879(8423)	0.93(653)	0.87(15128)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC231532.1_UP_LS0008	chrX:52368628|52370007:+	AC231532.1	-	pseudogene	no	.	3.609	0.000	0.000	0.006(57)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBN2_LS0004	chr7:139237097|139258488:+	UBN2	ubinuclein 2	protein coding gene	no	.	3.001	0.305	0.000	0.008(78)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
AL353608.3_LS002	chr9:68311842|68323678:+	AL353608.3	-	lncRNA gene	no	ENST00000603200.5	0.550	0.000	0.770	0(3)	0(0)	0.009(159)	non tumor-specific	nAS	yes
SRPRA_LS019	chr11:126268086|126268688:-	SRPRA	SRP receptor subunit alpha	protein coding gene	no	ENST00000332118.10;ENST00000528744.5;ENST00000530680.1	36.974	29.407	50.605	0.972(9314)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IP6K1_LS0054	chr3:49748163|49786354:-	IP6K1	inositol hexakisphosphate kinase 1	protein coding gene	no	.	7.577	3.397	0.000	0.04(383)	0.044(31)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
CBLB_LS020	chr3:105720250|105724026:-	CBLB	Cbl proto-oncogene B	protein coding gene	yes	ENST00000645759.1	0.973	0.068	0.000	0.001(10)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
AC007240.1_LS010	chr2:10129154|10141854:+	AC007240.1	-	protein coding gene	no	ENST00000641498.1;ENST00000646978.1	7.749	0.320	0.000	0.018(174)	0.004(3)	0(0)	non tumor-specific	nAS	yes
GAPDH_LS022	chr12:6537996|6538101:+	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	ENST00000229239.9;ENST00000396856.5;ENST00000396861.5;ENST00000474249.5;ENST00000466588.5;ENST00000396859.5;ENST00000466525.1;ENST00000396858.5;ENST00000619601.1	9496.571	2586.662	5056.285	0.941(9011)	0.96(674)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
TNRC6A_LS047	chr16:24823013|24827501:+	TNRC6A	trinucleotide repeat containing adaptor 6A	protein coding gene	no	ENST00000569098.1	0.418	0.081	0.681	0.047(446)	0.048(34)	0.068(1181)	non tumor-specific	nAS	yes
AC112229.4_LS001	chr2:110387397|110423661:-	AC112229.4	-	lncRNA gene	no	ENST00000488671.1	1.386	0.575	0.785	0.193(1847)	0.235(165)	0.224(3891)	non tumor-specific	nAS	yes
UN_PHC1_LS0002	chr12:8921065|8930435:+	PHC1	polyhomeotic homolog 1	protein coding gene	no	.	0.565	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
MCM8_LS012	chr20:5968025|5972007:+	MCM8	minichromosome maintenance 8 homologous recombination repair factor	protein coding gene	no	ENST00000378883.5;ENST00000378896.7;ENST00000610722.4;ENST00000265187.4	12.667	3.416	4.986	0.877(8398)	0.838(588)	0.939(16321)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KCNIP2_LS024	chr10:101829199|101830424:-	KCNIP2	potassium voltage-gated channel interacting protein 2	protein coding gene	no	ENST00000434163.5	0.153	0.085	0.690	0.031(301)	0.083(58)	0.023(392)	non tumor-specific	nAS	yes
CDHR2_LS003	chr5:176549414|176565338:+	CDHR2	cadherin related family member 2	protein coding gene	no	ENST00000261944.9	2.048	4.236	3.081	0.135(1290)	0.261(183)	0.084(1457)	non tumor-specific	exon_skip	yes
LINGO1_LS013	chr15:77796053|77819271:-	LINGO1	leucine rich repeat and Ig domain containing 1	protein coding gene	no	ENST00000566711.5;ENST00000567605.5	0.479	0.508	3.175	0.128(1224)	0.085(60)	0.167(2899)	non tumor-specific	nAS	yes
UN_ENO1_LS0129	chr1:8864066|8865376:+	ENO1	enolase 1	protein coding gene	no	.	16.457	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BAP1_LS029	chr3:52409608|52409714:-	BAP1	ring finger protein 2	protein coding gene	yes	ENST00000460680.5;ENST00000296288.9;ENST00000483984.5;ENST00000490917.1;ENST00000470173.1	26.136	20.115	35.450	0.98(9392)	0.994(698)	0.979(17018)	non tumor-specific	nAS	yes
FLII_LS019	chr17:18248033|18248550:-	FLII	FLII actin remodeling protein	protein coding gene	no	ENST00000327031.8;ENST00000545457.6;ENST00000578101.5;ENST00000579294.5;ENST00000577402.1	99.039	70.120	138.491	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
PPIL2_LS011	chr22:21670376|21670566:+	PPIL2	peptidylprolyl isomerase like 2	protein coding gene	no	ENST00000484439.5	0.448	0.326	1.759	0.275(2638)	0.293(206)	0.591(10267)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_HCFC1_LS0125	chrX:153960414|153961038:-	HCFC1	host cell factor C1	protein coding gene	no	.	1.544	0.176	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
LMBR1L_LS061	chr12:49110668|49110813:-	LMBR1L	limb development membrane protein 1 like	protein coding gene	no	ENST00000551782.5	0.057	0.018	0.663	0.035(335)	0.014(10)	0.034(595)	non tumor-specific	intron_retention	yes
PEX3_LS002	chr6:143451115|143462916:+	PEX3	peroxisomal biogenesis factor 3	protein coding gene	no	ENST00000367592.5	0.864	0.631	0.780	0.603(5776)	0.709(498)	0.355(6168)	non tumor-specific	exon_skip	yes
UN_AL009178.2_UP_LS0017	chr6:167452116|167455611:+	AL009178.2	-	lncRNA gene	no	.	3.631	0.351	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
TNNT2_LS043	chr1:201373268|201377623:-	TNNT2	troponin T2, cardiac type	protein coding gene	no	ENST00000367318.9;ENST00000367322.5;ENST00000491504.5;ENST00000458432.6;ENST00000421663.6;ENST00000367320.6;ENST00000438742.5;ENST00000455702.5;ENST00000422165.5;ENST00000412633.2;ENST00000472177.2	1.034	3.337	3.626	0.332(3179)	0.504(354)	0.793(13785)	non tumor-specific	intron_retention	yes
UN_LCN2_LS0031	chr9:128149663|128150199:+	LCN2	lipocalin 2	protein coding gene	yes	.	178.100	5.715	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
ATP2A2_LS013	chr12:110328017|110332597:+	ATP2A2	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2	protein coding gene	no	ENST00000308664.10;ENST00000377685.9;ENST00000539276.6;ENST00000548169.2;ENST00000547050.1	181.106	114.940	93.101	0.986(9443)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_AL139351.1_UP_LS0016	chr20:48025265|48062656:+	AL139351.1	-	lncRNA gene	no	.	1.034	0.058	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC020922.1_UP_LS0001	chr19:55360633|55374918:-	AC020922.1	-	protein coding gene	no	.	4.743	0.530	0.000	0.009(84)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_EIF4H_LS0024	chr7:74195310|74195391:-	EIF4H	eukaryotic translation initiation factor 4H	protein coding gene	no	.	3.261	0.350	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WDR37_LS0050	chr10:1096246|1103535:+	WDR37	WD repeat domain 37	protein coding gene	no	.	1.470	0.751	0.000	0.024(231)	0.026(18)	0(0)	non tumor-specific	alt_3prime	no
NEDD9_LS004	chr6:11192446|11193591:-	NEDD9	neural precursor cell expressed, developmentally down-regulated 9	protein coding gene	yes	ENST00000379446.9;ENST00000620854.4;ENST00000448183.6;ENST00000504387.5	31.611	55.889	23.220	0.961(9204)	0.987(693)	0.971(16883)	non tumor-specific	alt_5prime;exon_skip	yes
ARMC7_LS005	chr17:75110606|75128677:+	ARMC7	armadillo repeat containing 7	protein coding gene	no	ENST00000245543.5	20.967	12.926	9.404	0.971(9304)	0.984(691)	0.974(16932)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MILR1_UP_LS0020	chr17:64446421|64447176:+	MILR1	mast cell immunoglobulin like receptor 1	protein coding gene	no	.	4.675	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
VAV3_LS019	chr1:107642755|107704550:-	VAV3	vav guanine nucleotide exchange factor 3	protein coding gene	yes	ENST00000529809.5	0.468	0.242	0.801	0.26(2492)	0.427(300)	0.147(2551)	non tumor-specific	exon_skip	yes
CA1_LS007	chr8:85333620|85341599:-	CA1	carbonic anhydrase 1	protein coding gene	no	ENST00000626824.1;ENST00000522389.5;ENST00000519991.5;ENST00000520663.5	0.106	0.748	0.937	0.021(202)	0.077(54)	0.019(322)	non tumor-specific	exon_skip	yes
ZNF510_LS002	chr9:96763213|96763506:-	ZNF510	zinc finger protein 510	protein coding gene	no	ENST00000223428.8;ENST00000375231.5;ENST00000472201.1;ENST00000374641.3	5.716	3.880	7.280	0.965(9243)	0.972(682)	0.965(16782)	non tumor-specific	nAS	yes
BIRC3_LS010	chr11:102325565|102326729:+	BIRC3	baculoviral IAP repeat containing 3	protein coding gene	yes	ENST00000527309.1	0.133	0.303	0.740	0.162(1554)	0.189(133)	0.172(2987)	non tumor-specific	exon_skip	yes
SLC7A1_LS013	chr13:29553860|29586725:-	SLC7A1	solute carrier family 7 member 1	protein coding gene	no	ENST00000450494.1	0.870	0.371	2.578	0.1(961)	0.067(47)	0.145(2514)	non tumor-specific	nAS	yes
UN_GARS_LS0019	chr7:30616058|30617193:+	GARS	glycyl-tRNA synthetase 1	protein coding gene	no	.	9.706	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PIWIL2_LS014	chr8:22306016|22307933:+	PIWIL2	piwi like RNA-mediated gene silencing 2	protein coding gene	yes	ENST00000356766.10;ENST00000521356.5;ENST00000454009.6;ENST00000611073.1	5.506	0.770	1.426	0.065(627)	0.145(102)	0.615(10685)	non tumor-specific	nAS	yes
UN_DSP_LS0108	chr6:7584915|7585084:-	DSP	desmoplakin	protein coding gene	yes	.	2.709	20.836	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CLIP2_LS0061	chr7:74404225|74404328:-	CLIP2	CAP-Gly domain containing linker protein 2	protein coding gene	no	.	1.720	0.174	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRC2_LS023	chr17:62688403|62688501:+	MRC2	mannose receptor C type 2	protein coding gene	no	ENST00000303375.9;ENST00000583597.5;ENST00000446119.2	89.321	61.461	44.587	0.96(9200)	0.991(696)	0.975(16946)	non tumor-specific	alt_3prime;exon_skip	yes
ZIC3_LS003	chrX:137569065|137570983:+	ZIC3	Zic family member 3	protein coding gene	no	.;.	2.279	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ANKRD39_LS0016	chr2:96853604|96857888:-	ANKRD39	ankyrin repeat domain 39	protein coding gene	no	.	3.304	0.199	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
PHYHIP_LS007	chr8:22228909|22231796:-	PHYHIP	phytanoyl-CoA 2-hydroxylase interacting protein	protein coding gene	no	ENST00000321613.7	0.748	3.357	2.803	0.109(1045)	0.073(51)	0.329(5726)	non tumor-specific	exon_skip	yes
UN_ARHGDIA_LS0116	chr17:81868089|81868370:+	ARHGDIA	Rho GDP dissociation inhibitor alpha	protein coding gene	no	.	13.001	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC144NL_LS001	chr17:20836535|20836977:-	CCDC144NL	CCDC144A N-terminal pseudogene	protein coding gene	no	ENST00000539484.1	0.066	0.000	0.791	0.001(8)	0(0)	0.004(61)	non tumor-specific	nAS	yes
UBXN4_LS009	chr2:135755691|135761818:+	UBXN4	UBX domain protein 4	protein coding gene	no	ENST00000272638.13;ENST00000426921.5;ENST00000416538.5	84.766	59.270	64.775	0.991(9492)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
DOCK5_LS016	chr8:25317131|25319578:+	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	ENST00000276440.11;ENST00000444569.5	9.040	3.917	5.123	0.586(5619)	0.789(554)	0.919(15966)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AFM_LS013	chr4:73499246|73500004:+	AFM	afamin	protein coding gene	no	ENST00000226355.4	44.822	122.558	0.953	0.058(554)	0.222(156)	0.079(1370)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZNF560_LS002	chr19:9469187|9469630:-	ZNF560	zinc finger protein 560	protein coding gene	no	ENST00000301480.4;ENST00000585974.1	6.525	0.181	0.753	0.202(1933)	0.044(31)	0.13(2255)	non tumor-specific	intron_retention	yes
UN_LAMTOR5-AS1_LS0012	chr1:110356031|110365978:+	LAMTOR5-AS1	LAMTOR5 antisense RNA 1	lncRNA gene	no	.	2.073	0.043	0.000	0.014(132)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNLS_LS0014	chr10:88362725|88370579:-	RNLS	renalase, FAD dependent amine oxidase	protein coding gene	no	.	2.208	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
C9orf3_LS019	chr9:94979427|95005158:+	C9orf3	aminopeptidase O (putative)	protein coding gene	no	ENST00000297979.9;ENST00000375315.6;ENST00000424143.5;ENST00000428313.5;ENST00000462125.5;ENST00000479161.5;ENST00000451893.5;ENST00000460573.5	2.636	1.827	2.745	0.918(8799)	0.92(646)	0.896(15577)	non tumor-specific	exon_skip	yes
NFASC_LS003	chr1:204871053|204920632:+	NFASC	neurofascin	protein coding gene	no	ENST00000404076.5	0.071	0.015	0.705	0.053(512)	0.101(71)	0.03(528)	non tumor-specific	alt_5prime	yes
GPX3_LS001	chr5:151020741|151020828:+	GPX3	glutathione peroxidase 3	protein coding gene	yes	ENST00000521650.5;ENST00000519214.5	1.872	5.340	15.656	0.574(5499)	0.819(575)	0.841(14611)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
TRIM68_LS009	chr11:4603340|4605079:-	TRIM68	tripartite motif containing 68	protein coding gene	no	ENST00000300747.9;ENST00000531101.5;ENST00000532108.1	6.707	5.518	7.228	0.915(8766)	0.976(685)	0.962(16724)	non tumor-specific	exon_skip	yes
UN_FUT11_LS0009	chr10:73775945|73778828:+	FUT11	fucosyltransferase 11	protein coding gene	no	.	4.490	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MUC1_LS0147	chr1:155188634|155190098:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	5.103	2.767	0.000	0.011(102)	0.004(3)	0(0)	non tumor-specific	nAS	no
RRBP1_LS013	chr20:17620807|17621458:-	RRBP1	ribosome binding protein 1	protein coding gene	no	ENST00000470422.5;ENST00000610403.4;ENST00000246043.8;ENST00000377813.5;ENST00000377807.6;ENST00000360807.8;ENST00000455029.3	378.953	222.716	122.274	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF133_LS027	chr20:18298464|18305668:+	ZNF133	zinc finger protein 133	protein coding gene	no	.;.	1.312	0.521	0.000	0.008(76)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CAMSAP1_LS017	chr9:135850461|135866456:-	CAMSAP1	calmodulin regulated spectrin associated protein 1	protein coding gene	no	ENST00000312405.10	0.213	0.095	1.416	0.675(6463)	0.708(497)	0.682(11850)	non tumor-specific	exon_skip	yes
UN_SLC37A4_LS0012	chr11:119026080|119026502:-	SLC37A4	solute carrier family 37 member 4	protein coding gene	no	.	4.874	0.318	0.000	0.014(138)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
GPNMB_LS027	chr7:23273176|23273521:+	GPNMB	glycoprotein nmb	protein coding gene	no	ENST00000463011.5	0.094	0.120	0.603	0.766(7341)	0.848(595)	0.025(428)	non tumor-specific	nAS	yes
TMTC4_LS001	chr13:100605142|100606358:-	TMTC4	transmembrane O-mannosyltransferase targeting cadherins 4	protein coding gene	no	ENST00000376234.7;ENST00000342624.9;ENST00000328767.9	23.245	12.706	10.974	0.916(8772)	0.936(657)	0.964(16753)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
VPS16_LS009	chr20:2861280|2861615:+	VPS16	VPS16 core subunit of CORVET and HOPS complexes	protein coding gene	no	ENST00000380445.7;ENST00000380469.7;ENST00000453689.5;ENST00000417508.1;ENST00000481812.4	36.123	20.022	36.782	0.987(9461)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
ARMH1_LS006	chr1:44674873|44689676:+	ARMH1	armadillo like helical domain containing 1	protein coding gene	no	ENST00000424484.5;ENST00000455805.5;ENST00000441519.5;ENST00000357508.5;ENST00000535358.5	0.638	0.361	1.585	0.234(2245)	0.265(186)	0.586(10192)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NDE1_LS0008	chr16:15667439|15677804:+	NDE1	nudE neurodevelopment protein 1	protein coding gene	no	.	6.522	1.092	0.000	0.052(503)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_XKR8_LS0013	chr1:27965881|27966503:+	XKR8	XK related 8	protein coding gene	no	.	2.199	0.522	0.000	0.023(225)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
SATB1-AS1_LS006	chr3:18466039|18468986:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000598149.5	0.770	0.176	0.911	0.263(2524)	0.239(168)	0.165(2864)	non tumor-specific	nAS	yes
DEPDC1B_LS016	chr5:60689050|60700046:-	DEPDC1B	DEP domain containing 1B	protein coding gene	no	ENST00000512078.5	0.021	0.000	0.432	0.014(132)	0.003(2)	0.005(80)	non tumor-specific	exon_skip;mutex_exons	yes
SLAIN2_LS011	chr4:48394653|48420125:+	SLAIN2	SLAIN motif family member 2	protein coding gene	no	ENST00000512093.5;ENST00000510595.1	25.502	25.146	23.477	0.981(9402)	0.997(700)	0.971(16877)	non tumor-specific	exon_skip	yes
COL1A2_LS004	chr7:94398396|94399049:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	ENST00000297268.10;ENST00000620463.1	557.390	294.054	107.883	0.969(9282)	0.994(698)	0.955(16595)	non tumor-specific	exon_skip	yes
HILPDA_LS003	chr7:128455909|128457201:+	HILPDA	hypoxia inducible lipid droplet associated	protein coding gene	no	ENST00000435296.2;ENST00000435296.2	2.539	1.018	2.467	0.822(7880)	0.783(550)	0.836(14524)	non tumor-specific	alt_3prime;alt_5prime	yes
LRGUK_LS012	chr7:134183853|134191655:+	LRGUK	leucine rich repeats and guanylate kinase domain containing	protein coding gene	no	ENST00000645682.1;ENST00000285928.2	2.946	1.224	1.268	0.138(1321)	0.13(91)	0.562(9773)	non tumor-specific	nAS	yes
MAP2K5_LS001	chr15:67543470|67550034:+	MAP2K5	mitogen-activated protein kinase kinase 5	protein coding gene	no	ENST00000178640.9;ENST00000560591.5;ENST00000395476.6	8.321	6.271	20.052	0.956(9164)	0.983(690)	0.978(17008)	non tumor-specific	exon_skip	yes
BARD1_LS010	chr2:214752555|214767482:-	BARD1	BRCA1 associated RING domain 1	protein coding gene	yes	ENST00000260947.8;ENST00000617164.4;ENST00000620057.4;ENST00000455743.5	7.305	2.399	3.780	0.785(7523)	0.776(545)	0.87(15117)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC087289.3_LS0020	chr17:75901027|75901712:-	AC087289.3	-	protein coding gene	no	.	34.807	0.052	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
SUPT7L_LS003	chr2:27657669|27660984:-	SUPT7L	SPT7 like, STAGA complex subunit gamma	protein coding gene	no	ENST00000337768.9;ENST00000406540.5;ENST00000405491.5;ENST00000464789.2	75.371	37.950	73.449	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DGCR2_LS0018	chr22:19036709|19036787:+	DGCR2	DiGeorge syndrome critical region gene 2	protein coding gene	no	.	1.302	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
F13B_LS002	chr1:197040377|197040522:-	F13B	coagulation factor XIII B chain	protein coding gene	no	ENST00000490002.1	9.617	6.215	29.626	0.018(171)	0.036(25)	0.006(107)	non tumor-specific	nAS	yes
TKFC_LS024	chr11:61342495|61342574:+	TKFC	triokinase and FMN cyclase	protein coding gene	no	ENST00000394900.7;ENST00000529479.5;ENST00000534134.1	38.892	52.611	19.137	0.994(9527)	0.997(700)	0.979(17015)	non tumor-specific	exon_skip;intron_retention	yes
MDH1_LS008	chr2:63589384|63594488:+	MDH1	malate dehydrogenase 1	protein coding gene	no	ENST00000432309.5;ENST00000539945.5;ENST00000544381.3;ENST00000421012.1	0.283	1.490	2.099	0.906(8684)	0.956(671)	0.631(10965)	non tumor-specific	exon_skip;mutex_exons	yes
ITSN2_LS036	chr2:24300171|24301154:-	ITSN2	intersectin 2	protein coding gene	no	ENST00000361999.7;ENST00000355123.8;ENST00000622089.4;ENST00000406921.7;ENST00000412011.5	18.794	15.804	14.993	0.882(8451)	0.97(681)	0.972(16903)	non tumor-specific	exon_skip	yes
UN_TSC22D2_UP_LS0012	chr3:150359682|150378330:+	TSC22D2	TSC22 domain family member 2	protein coding gene	no	.	1.872	0.188	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
POLE2_LS035	chr14:49683693|49688136:-	POLE2	DNA polymerase epsilon 2, accessory subunit	protein coding gene	no	ENST00000216367.9;ENST00000539565.6;ENST00000556584.5;ENST00000554396.5;ENST00000553805.2	3.450	0.719	1.359	0.846(8105)	0.652(458)	0.633(11010)	non tumor-specific	exon_skip	yes
AC097468.1_LS002	chr2:219010042|219013902:+	AC097468.1	-	lncRNA gene	no	ENST00000441450.1	0.690	0.252	0.837	0.082(784)	0.087(61)	0.041(715)	non tumor-specific	nAS	yes
UN_TMC7_LS0032	chr16:19057061|19063476:-	TMC7	transmembrane channel like 7	protein coding gene	no	.	2.082	0.453	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
APOBEC3H_LS010	chr22:39102605|39103689:+	APOBEC3H	apolipoprotein B mRNA editing enzyme catalytic subunit 3H	protein coding gene	no	ENST00000401756.5	0.151	0.149	0.806	0.151(1445)	0.067(47)	0.142(2475)	non tumor-specific	alt_3prime;exon_skip	yes
AC025437.1_LS001	chr5:158275900|158278658:+	AC025437.1	-	lncRNA gene	no	ENST00000523820.1	0.544	0.000	0.776	0.002(22)	0(0)	0(1)	non tumor-specific	nAS	yes
UN_GTF2IP7_LS0010	chr7:76099956|76103813:-	GTF2IP7	general transcription factor IIi pseudogene 7	pseudogene	no	.	1.874	0.365	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
FXYD2_LS010	chr11:117828108|117828626:-	FXYD2	FXYD domain containing ion transport regulator 2	protein coding gene	no	ENST00000528014.5	0.134	0.054	0.704	0.132(1264)	0.218(153)	0.054(941)	non tumor-specific	nAS	yes
PRTG_LS010	chr15:55656354|55672445:-	PRTG	protogenin	protein coding gene	no	ENST00000561465.1	0.768	0.279	0.736	0.18(1723)	0.272(191)	0.137(2387)	non tumor-specific	alt_3prime	yes
MUC4_LS386	chr3:195786793|195787418:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	1.340	0.965	0.000	0.001(6)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ELP5_LS005	chr17:7252337|7252426:+	ELP5	elongator acetyltransferase complex subunit 5	protein coding gene	no	ENST00000356683.6;ENST00000396627.6	0.333	0.425	1.357	0.624(5981)	0.728(511)	0.688(11958)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
FAM126A_LS004	chr7:22946163|22946952:-	FAM126A	family with sequence similarity 126 member A	protein coding gene	no	ENST00000440481.5;ENST00000409923.5	3.325	2.301	6.613	0.641(6138)	0.813(571)	0.82(14255)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MEF2D_LS0097	chr1:156499495|156500486:-	MEF2D	myocyte enhancer factor 2D	protein coding gene	no	.	1.683	0.408	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
LINC01192_LS002	chr3:163182928|163187068:-	LINC01192	long intergenic non-protein coding RNA 1192	lncRNA gene	no	ENST00000470546.5	1.769	0.000	0.598	0.001(12)	0(0)	0.002(39)	non tumor-specific	nAS	yes
ZBTB7C_LS006	chr18:48041123|48162348:-	ZBTB7C	zinc finger and BTB domain containing 7C	protein coding gene	yes	ENST00000588982.5;ENST00000592656.5;ENST00000592387.5;ENST00000588053.5;ENST00000591526.5	0.409	0.262	0.695	0.096(920)	0.077(54)	0.07(1219)	non tumor-specific	exon_skip;mutex_exons	yes
UN_HNF1A-AS1_LS0013	chr12:120942509|120974485:-	HNF1A-AS1	HNF1A antisense RNA 1	lncRNA gene	no	.	3.001	0.513	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PWP1_UP_LS0001	chr12:107660485|107662948:+	PWP1	PWP1 homolog, endonuclein	protein coding gene	no	.	2.624	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAZ_LS0033	chr16:29806871|29807195:-	MAZ	MYC associated zinc finger protein	protein coding gene	no	.	1.832	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IRF2BPL_LS0050	chr14:77026295|77026416:+	IRF2BPL	interferon regulatory factor 2 binding protein like	protein coding gene	no	.	3.775	1.551	0.000	0.058(552)	0.046(32)	0(0)	non tumor-specific	nAS	no
FAM71D_LS002	chr14:67189569|67196954:+	FAM71D	family with sequence similarity 71 member D	protein coding gene	no	ENST00000530728.5	0.552	0.000	0.660	0.001(6)	0(0)	0.004(63)	non tumor-specific	exon_skip	yes
CPA2_LS012	chr7:130277916|130279463:+	CPA2	carboxypeptidase A2	protein coding gene	no	ENST00000222481.8	19.867	76.449	2.992	0.135(1290)	0.12(84)	0.652(11340)	non tumor-specific	exon_skip	yes
AC004832.1_LS004	chr22:30483839|30485747:+	AC004832.1	-	lncRNA gene	no	ENST00000628773.1	5.260	0.786	1.482	0.022(215)	0.097(68)	0.019(336)	non tumor-specific	nAS	yes
RNF149_LS005	chr2:101273341|101281859:-	RNF149	ring finger protein 149	protein coding gene	no	ENST00000424632.5;ENST00000424632.5	0.279	0.422	1.958	0.849(8135)	0.856(601)	0.824(14317)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ACSF2_LS0007	chr17:50462944|50463156:+	ACSF2	acyl-CoA synthetase family member 2	protein coding gene	no	.	3.363	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
SLC41A1_LS013	chr1:205801060|205810070:-	SLC41A1	solute carrier family 41 member 1	protein coding gene	no	ENST00000367137.3	19.248	18.344	23.532	0.905(8667)	0.947(665)	0.97(16865)	non tumor-specific	nAS	yes
ATP6V1C2_LS001	chr2:10721176|10722824:+	ATP6V1C2	ATPase H+ transporting V1 subunit C2	protein coding gene	no	ENST00000648362.1	1.044	0.178	0.000	0.014(134)	0.01(7)	0(0)	non tumor-specific	alt_5prime	yes
UN_LINC01133_LS0006	chr1:159977112|159980562:+	LINC01133	long intergenic non-protein coding RNA 1133	lncRNA gene	no	.	1.464	0.507	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
NR1H3_LS032	chr11:47258129|47259791:+	NR1H3	nuclear receptor subfamily 1 group H member 3	protein coding gene	no	ENST00000476086.6;ENST00000476086.6;ENST00000476086.6	0.043	0.022	1.383	0.68(6519)	0.739(519)	0.587(10199)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ENAM_LS0035	chr4:70666899|70667294:-	ENAM	enamelin	protein coding gene	no	.	0.937	0.827	0.000	0.002(16)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_VAMP7_LS0007	chrX:155887472|155889458:+	VAMP7	vesicle associated membrane protein 7	protein coding gene	no	.	0.801	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
MYZAP_LS003	chr15:57599703|57604269:+	MYZAP	myocardial zonula adherens protein	protein coding gene	no	ENST00000569089.1	0.739	0.604	1.337	0.041(391)	0.145(102)	0.318(5522)	non tumor-specific	nAS	yes
UN_FKBP5_LS0034	chr6:35640499|35642720:-	FKBP5	FKBP prolyl isomerase 5	protein coding gene	no	.	15.502	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_IQCB1_LS0020	chr3:121809009|121811561:-	IQCB1	IQ motif containing B1	protein coding gene	no	.	1.692	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
YES1_LS010	chr18:751804|756557:-	YES1	YES proto-oncogene 1, Src family tyrosine kinase	protein coding gene	yes	ENST00000577961.5;ENST00000584307.5;ENST00000314574.4;ENST00000577611.1	26.209	22.629	12.408	0.932(8928)	0.98(688)	0.953(16558)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AC083906.3_UP_LS0011	chr3:129984363|129985085:-	AC083906.3	-	lncRNA gene	no	.	2.090	0.202	0.000	0.011(109)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SERHL_LS0005	chr22:42502489|42502852:-	SERHL	serine hydrolase like (pseudogene)	pseudogene	no	.	2.529	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GBA_LS0025	chr1:155237478|155237511:+	GBA	glucosylceramidase beta	protein coding gene	no	.	4.948	0.068	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLHDC9_LS010	chr1:161099505|161099598:+	KLHDC9	kelch domain containing 9	protein coding gene	no	ENST00000490724.6;ENST00000368011.8;ENST00000392191.6	11.537	9.978	7.656	0.903(8647)	0.991(696)	0.923(16045)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC063977.3_LS001	chr19:51251534|51270163:-	AC063977.3	-	lncRNA gene	no	ENST00000597569.1	0.086	0.000	0.897	0(1)	0(0)	0.001(25)	non tumor-specific	nAS	yes
UN_AC034102.3_LS0003	chr12:56038976|56041470:-	AC034102.3	-	lncRNA gene	no	.	2.326	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC016205.1_LS0008	chr18:39208789|39233403:-	AC016205.1	-	lncRNA gene	no	.	1.407	0.000	0.000	0.009(84)	0(0)	0(0)	non tumor-specific	nAS	no
RBM46_LS007	chr4:154799564|154826768:+	RBM46	RNA binding motif protein 46	protein coding gene	no	ENST00000510397.5	1.462	0.090	0.657	0.008(73)	0.001(1)	0.008(144)	non tumor-specific	exon_skip	yes
UN_AP1B1_LS0157	chr22:29367213|29419172:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	16.073	0.880	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EXOC7_LS0005	chr17:76081402|76081523:+	EXOC7	exocyst complex component 7	protein coding gene	no	.	2.959	0.538	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADAM8_LS013	chr10:133269974|133270360:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7	24.775	6.341	6.327	0.873(8365)	0.799(561)	0.955(16596)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BEST4_UP_LS0004	chr1:44787717|44789777:-	BEST4	bestrophin 4	protein coding gene	no	.	1.565	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
MTDH_LS014	chr8:97706750|97713662:+	MTDH	metadherin	protein coding gene	yes	ENST00000336273.7;ENST00000519934.5;ENST00000521933.1;ENST00000522104.1	140.751	80.296	46.348	0.995(9529)	0.997(700)	0.979(17012)	non tumor-specific	exon_skip	yes
UN_CLTB_UP_LS0014	chr5:176536994|176543261:-	CLTB	clathrin light chain B	protein coding gene	no	.	1.014	0.359	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NFE2L2_LS0099	chr2:177385399|177392573:-	NFE2L2	nuclear factor, erythroid 2 like 2	protein coding gene	no	.	1.696	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ITPR1_LS052	chr3:4725581|4727126:+	ITPR1	inositol 1,4,5-trisphosphate receptor type 1	protein coding gene	no	ENST00000302640.12;ENST00000648266.1;ENST00000649015.1;ENST00000648309.1;ENST00000443694.4;ENST00000648431.1;ENST00000648212.1;ENST00000647708.1;ENST00000649414.1;ENST00000494681.5	1.421	2.196	1.658	0.04(387)	0.028(20)	0.213(3700)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GTPBP2_LS0065	chr6:43628589|43628977:-	GTPBP2	GTP binding protein 2	protein coding gene	no	.	1.172	0.127	0.000	0.018(170)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
PALLD_LS022	chr4:168878394|168890922:+	PALLD	palladin, cytoskeletal associated protein	protein coding gene	no	ENST00000649826.1;ENST00000507735.6	12.036	19.693	43.790	0.867(8302)	0.973(683)	0.96(16680)	non tumor-specific	exon_skip	yes
UN_IFRD1_LS0016	chr7:112464361|112464386:+	IFRD1	interferon related developmental regulator 1	protein coding gene	no	.	23.700	1.040	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
ADAR_LS010	chr1:154589928|154590184:-	ADAR	adenosine deaminase RNA specific	protein coding gene	no	ENST00000368474.9;ENST00000649593.1;ENST00000647597.1;ENST00000648231.1;ENST00000368471.8;ENST00000649042.1;ENST00000649749.1;ENST00000648311.1;ENST00000649724.1;ENST00000649021.1	124.942	74.740	58.023	0.98(9391)	0.991(696)	0.979(17020)	non tumor-specific	alt_5prime	yes
UN_STAC2_LS0007	chr17:39212056|39212143:-	STAC2	SH3 and cysteine rich domain 2	protein coding gene	no	.	24.349	4.814	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
RPGRIP1_LS020	chr14:21321506|21321857:+	RPGRIP1	RPGR interacting protein 1	protein coding gene	no	ENST00000555322.5	0.337	0.001	0.689	0.003(24)	0.001(1)	0.031(540)	non tumor-specific	alt_3prime;intron_retention	yes
ZNF74_LS018	chr22:20395418|20400632:+	ZNF74	zinc finger protein 74	protein coding gene	no	ENST00000400451.6;ENST00000611540.4;ENST00000357502.5;ENST00000493734.5;ENST00000405993.2;ENST00000400451.6;ENST00000611540.4;ENST00000357502.5;ENST00000493734.5;ENST00000405993.2	3.597	1.776	3.174	0.941(9020)	0.936(657)	0.921(16009)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_MACROD1_UP_LS0017	chr11:64175334|64184233:-	MACROD1	mono-ADP ribosylhydrolase 1	protein coding gene	yes	.	5.453	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LYZL1_LS004	chr10:29310188|29310990:+	LYZL1	lysozyme like 1	protein coding gene	no	ENST00000375500.8;ENST00000649382.1	25.414	0.000	0.783	0.002(20)	0(0)	0.032(552)	non tumor-specific	nAS	yes
AC090458.1_LS001	chr11:42214986|42238093:-	AC090458.1	-	lncRNA gene	no	ENST00000527757.1	0.001	0.000	0.567	0(1)	0(0)	0(6)	non tumor-specific	nAS	yes
EFCAB14_LS012	chr1:46708051|46716295:-	EFCAB14	EF-hand calcium binding domain 14	protein coding gene	no	ENST00000371933.7	71.748	72.810	45.395	0.975(9345)	0.99(695)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
SGO2_LS007	chr2:200542664|200543025:+	SGO2	shugoshin 2	protein coding gene	no	ENST00000469840.1	0.286	0.117	0.649	0.233(2233)	0.144(101)	0.059(1034)	non tumor-specific	alt_3prime	yes
UN_MLLT11_LS0006	chr1:151057931|151060481:+	MLLT11	MLLT11 transcription factor 7 cofactor	protein coding gene	yes	.	1.717	0.085	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ST20-MTHFS_UP_LS0001	chr15:79961174|80017605:-	ST20-MTHFS	ST20-MTHFS readthrough	protein coding gene	no	.	6.887	3.346	0.000	0.022(209)	0.038(27)	0(0)	non tumor-specific	nAS	no
ALOX5_LS016	chr10:45443216|45443416:+	ALOX5	arachidonate 5-lipoxygenase	protein coding gene	no	ENST00000542434.5;ENST00000374391.6;ENST00000612635.4;ENST00000493336.1	20.998	22.338	7.814	0.959(9186)	0.986(692)	0.908(15786)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NPIPB5_LS0277	chr16:22535440|22535567:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	3.441	1.370	0.000	0.017(160)	0.006(4)	0(0)	non tumor-specific	nAS	no
KIFC2_LS014	chr8:144470677|144471942:+	KIFC2	kinesin family member C2	protein coding gene	no	ENST00000531423.1	0.222	0.167	1.218	0.454(4345)	0.214(150)	0.505(8773)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SI_LS033	chr3:165047012|165049127:-	SI	sucrase-isomaltase	protein coding gene	no	ENST00000264382.7	18.566	19.477	4.007	0.066(628)	0.123(86)	0.036(630)	non tumor-specific	nAS	yes
TMEM170A_LS002	chr16:75447688|75451669:-	TMEM170A	transmembrane protein 170A	protein coding gene	no	ENST00000569540.5;ENST00000561878.1;ENST00000567796.1	9.760	6.642	4.888	0.922(8836)	0.93(653)	0.958(16646)	non tumor-specific	nAS	yes
FUT3_LS001	chr19:5844851|5846426:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	ENST00000303225.11;ENST00000589918.5;ENST00000589620.5;ENST00000589714.1;ENST00000587048.1;ENST00000585715.1;ENST00000587183.1	12.326	13.079	2.030	0.598(5733)	0.704(494)	0.322(5603)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DOT1L_LS0027	chr19:2217867|2220108:+	DOT1L	DOT1 like histone lysine methyltransferase	protein coding gene	no	.	2.092	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ACRV1_LS007	chr11:125678297|125680729:-	ACRV1	acrosomal vesicle protein 1	protein coding gene	no	ENST00000533904.5;ENST00000315608.7;ENST00000530048.5;ENST00000527795.1	0.340	0.021	0.723	0.046(443)	0.013(9)	0.053(916)	non tumor-specific	nAS	yes
PACS2_LS001	chr14:105300979|105348493:+	PACS2	phosphofurin acidic cluster sorting protein 2	protein coding gene	no	ENST00000430725.6	0.139	0.082	0.856	0.488(4675)	0.544(382)	0.396(6889)	non tumor-specific	nAS	yes
UN_CASC4_LS0036	chr15:44380976|44402928:+	CASC4	golgi membrane protein 2	protein coding gene	no	.	23.119	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_RALGAPA2_LS0056	chr20:20581567|20583050:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	.	1.665	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PIK3CD_LS0066	chr1:9723450|9723969:+	PIK3CD	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein coding gene	no	.	2.539	0.685	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_MRPL34_LS0046	chr19:17306547|17306574:-	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	.	5.829	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF335_LS0014	chr20:45950595|45950728:-	ZNF335	zinc finger protein 335	protein coding gene	no	.	2.315	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_ARPC5_LS0023	chr1:183633147|183635512:+	ARPC5	actin related protein 2/3 complex subunit 5	protein coding gene	no	.	1.584	0.440	0.000	0.053(512)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_NUP88_LS0033	chr17:5384500|5386708:-	NUP88	nucleoporin 88	protein coding gene	no	.	0.683	0.102	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TMC8_LS018	chr17:78135009|78136620:+	TMC8	transmembrane channel like 8	protein coding gene	no	ENST00000592399.5	0.071	0.631	0.975	0.432(4143)	0.397(279)	0.281(4891)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AKR1C1_LS004	chr10:4963528|4966010:+	AKR1C1	aldo-keto reductase family 1 member C1	protein coding gene	no	ENST00000442997.5	5.524	5.036	1.319	0.62(5942)	0.849(596)	0.478(8310)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_FAM138E_UP_LS0006	chr15:101913226|101913734:+	FAM138E	family with sequence similarity 138 member E	lncRNA gene	no	.	1.799	1.074	0.000	0.002(20)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_SSRP1_LS0043	chr11:57335247|57335730:-	SSRP1	structure specific recognition protein 1	protein coding gene	no	.	1.423	0.336	0.000	0.039(372)	0.03(21)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
AKR1C2_LS018	chr10:5000460|5000550:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	ENST00000455190.2;ENST00000604184.1	0.399	0.010	0.904	0.136(1305)	0.154(108)	0.254(4412)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_COL1A2_LS0137	chr7:94424432|94425124:-	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	.	69.052	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TIMM23_LS0013	chr10:46002484|46003203:+	TIMM23	translocase of inner mitochondrial membrane 23	protein coding gene	no	.	5.799	0.736	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00305_LS004	chr18:64098640|64148775:-	LINC00305	long intergenic non-protein coding RNA 305	lncRNA gene	no	ENST00000323355.3	0.008	0.000	0.874	0(2)	0(0)	0.001(14)	non tumor-specific	nAS	yes
AC118758.3_LS006	chr7:56835388|56847831:-	AC118758.3	-	lncRNA gene	no	ENST00000624628.1	0.104	0.000	0.685	0(1)	0(0)	0.001(11)	non tumor-specific	nAS	yes
UN_AQR_UP_LS0002	chr15:34987673|34988503:-	AQR	aquarius intron-binding spliceosomal factor	protein coding gene	no	.	1.500	0.324	0.000	0.018(174)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
MBD1_LS009	chr18:50269811|50272677:-	MBD1	methyl-CpG binding domain protein 1	protein coding gene	yes	ENST00000587605.5;ENST00000587605.5	0.206	0.247	5.203	0.531(5084)	0.603(423)	0.966(16795)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PALD1_LS003	chr10:70529331|70529889:+	PALD1	phosphatase domain containing paladin 1	protein coding gene	no	ENST00000263563.6	11.540	6.517	5.821	0.84(8050)	0.903(634)	0.896(15581)	non tumor-specific	nAS	yes
UN_SIVA1_LS0005	chr14:104753319|104755635:+	SIVA1	SIVA1 apoptosis inducing factor	protein coding gene	no	.	52.930	4.004	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ZNF862_LS0037	chr7:149859526|149860394:+	ZNF862	zinc finger protein 862	protein coding gene	no	.	1.237	0.351	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL162511.1_LS0008	chr14:36233511|36235324:+	AL162511.1	-	lncRNA gene	no	.	3.425	1.242	0.000	0.004(37)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_TAF12_LS0006	chr1:28592750|28593694:+	TAF12	TATA-box binding protein associated factor 12	protein coding gene	no	.	1.531	0.141	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_TSC22D4_LS0031	chr7:100466987|100467014:+	TSC22D4	TSC22 domain family member 4	protein coding gene	no	.	6.508	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL136418.1_LS0003	chr14:31248691|31272139:+	AL136418.1	-	lncRNA gene	no	.	1.645	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AC244153.1_LS001	chr17:38450723|38451306:-	AC244153.1	-	lncRNA gene	no	ENST00000617990.4;ENST00000617855.1	1.475	1.128	2.219	0.456(4365)	0.658(462)	0.678(11786)	non tumor-specific	nAS	yes
JAK2_LS007	chr9:4986022|5021963:+	JAK2	Janus kinase 2	protein coding gene	yes	ENST00000636127.1;ENST00000476574.5;ENST00000381652.3;ENST00000636127.1;ENST00000476574.5;ENST00000381652.3	6.434	5.028	5.131	0.712(6823)	0.879(617)	0.917(15933)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC2A6_LS0007	chr9:133473619|133473980:-	SLC2A6	solute carrier family 2 member 6	protein coding gene	no	.	3.253	0.440	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CCDC187_LS012	chr9:136268125|136274658:-	CCDC187	coiled-coil domain containing 187	protein coding gene	no	ENST00000638797.1	5.353	2.327	1.953	0.051(487)	0.114(80)	0.094(1629)	non tumor-specific	nAS	yes
UN_DNASE2_LS0017	chr19:12876152|12876323:+	DNASE2	deoxyribonuclease 2, lysosomal	protein coding gene	no	.	0.952	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OGA_LS0028	chr10:101793998|101794851:-	OGA	O-GlcNAcase	protein coding gene	no	.	5.133	0.121	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_MUC17_LS0364	chr7:101038301|101041131:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.	16.738	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UBR5_LS014	chr8:102265275|102266953:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	.;.	6.967	0.139	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MROH3P_LS0008	chr1:200922761|200928929:+	MROH3P	maestro heat like repeat family member 3, pseudogene	pseudogene	no	.	2.146	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
PPP2R2C_LS018	chr4:6414031|6420946:-	PPP2R2C	protein phosphatase 2 regulatory subunit Bgamma	protein coding gene	yes	ENST00000515571.5	0.000	0.000	0.582	0(1)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_RNF24_LS0021	chr20:3934350|3934994:-	RNF24	ring finger protein 24	protein coding gene	no	.	1.951	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AC003991.1_LS007	chr7:88239500|88271763:+	AC003991.1	-	lncRNA gene	no	ENST00000629560.2	0.000	0.029	0.650	0(1)	0.001(1)	0.001(18)	non tumor-specific	nAS	yes
UN_ZNF821_LS0015	chr16:71881404|71883211:-	ZNF821	zinc finger protein 821	protein coding gene	no	.	1.233	0.267	0.000	0.026(252)	0.023(16)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MEF2C_LS047	chr5:88839623|88882955:-	MEF2C	myocyte enhancer factor 2C	protein coding gene	yes	ENST00000509349.1	0.010	0.010	0.661	0.035(332)	0.08(56)	0.08(1389)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PPAT_LS0016	chr4:56420048|56428246:+	PPAT	phosphoribosyl pyrophosphate amidotransferase	protein coding gene	no	.	1.915	0.309	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TBC1D13_LS0043	chr9:128809738|128809949:-	TBC1D13	TBC1 domain family member 13	protein coding gene	no	.	1.797	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL035446.2_LS0016	chr6:140671116|140757895:+	AL035446.2	-	lncRNA gene	no	.	5.991	0.174	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC24A3_LS016	chr20:19696911|19698568:+	SLC24A3	solute carrier family 24 member 3	protein coding gene	no	ENST00000328041.10;ENST00000613834.1	11.490	13.348	10.009	0.699(6694)	0.877(616)	0.91(15809)	non tumor-specific	nAS	yes
UN_PAQR4_LS0014	chr16:2971684|2972337:+	PAQR4	progestin and adipoQ receptor family member 4	protein coding gene	no	.	1.840	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC015921.1_LS002	chr17:2963965|2964432:-	AC015921.1	-	lncRNA gene	no	ENST00000574885.1	0.870	0.283	0.722	0.09(864)	0.08(56)	0.051(891)	non tumor-specific	nAS	yes
UN_PLA2G2A_LS0005	chr1:19975593|19975638:+	PLA2G2A	phospholipase A2 group IIA	protein coding gene	yes	.	19.759	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NRXN3_LS006	chr14:78297860|78645120:+	NRXN3	neurexin 3	protein coding gene	no	ENST00000635466.1;ENST00000556088.1;ENST00000553363.5	0.937	1.541	2.170	0.05(479)	0.028(20)	0.14(2430)	non tumor-specific	exon_skip	yes
UN_GTF3C1_LS0026	chr16:27461316|27461423:+	GTF3C1	general transcription factor IIIC subunit 1	protein coding gene	no	.	5.777	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDIA3_LS0019	chr15:43753902|43756628:+	PDIA3	protein disulfide isomerase family A member 3	protein coding gene	no	.	131.371	7.995	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
ZNF143_LS013	chr11:9473849|9473941:+	ZNF143	zinc finger protein 143	protein coding gene	no	ENST00000496276.5	0.118	0.038	1.297	0.158(1515)	0.224(157)	0.606(10533)	non tumor-specific	exon_skip	yes
UN_RIF1_LS0052	chr2:151483335|151506210:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	.	2.548	0.112	0.000	0.012(117)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_IGHG3_LS0047	chr14:105769561|105769671:+	IGHG3	immunoglobulin heavy constant gamma 3 (G3m marker)	no	no	.	21.173	6.194	0.000	0.012(116)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NDUFAF6_LS0055	chr8:95032094|95034008:+	NDUFAF6	NADH:ubiquinone oxidoreductase complex assembly factor 6	protein coding gene	no	.	2.112	0.009	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SMG1P3_LS011	chr16:21456459|21457011:-	SMG1P3	SMG1 pseudogene 3	pseudogene	no	ENST00000520823.6;ENST00000522480.5	4.255	1.409	0.633	0.833(7980)	0.858(602)	0.028(481)	non tumor-specific	nAS	yes
SSR1_LS020	chr6:7301572|7303550:-	SSR1	signal sequence receptor subunit 1	protein coding gene	no	ENST00000474597.5;ENST00000650389.1;ENST00000244763.8;ENST00000397511.6;ENST00000479365.5;ENST00000462112.1;ENST00000488834.5;ENST00000483409.1	168.688	89.028	47.249	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
IGDCC3_LS015	chr15:65335956|65355719:-	IGDCC3	immunoglobulin superfamily DCC subclass member 3	protein coding gene	no	ENST00000559058.1	0.437	0.165	1.203	0.036(346)	0.043(30)	0.082(1418)	non tumor-specific	nAS	yes
UN_C1orf159_UP_LS0005	chr1:1123514|1123595:-	C1orf159	chromosome 1 open reading frame 159	protein coding gene	no	.	3.867	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	nAS	no
CACNA1F_LS027	chrX:49218941|49219321:-	CACNA1F	calcium voltage-gated channel subunit alpha1 F	protein coding gene	no	ENST00000376251.5;ENST00000323022.9;ENST00000376265.2	2.871	0.046	0.925	0.02(195)	0.004(3)	0.334(5811)	non tumor-specific	exon_skip	yes
UN_ITGA3_LS0157	chr17:50090079|50090176:-	ITGA3	integrin subunit alpha 3	protein coding gene	yes	.	2.984	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PPA2_LS019	chr4:105438036|105446383:-	PPA2	inorganic pyrophosphatase 2	protein coding gene	no	ENST00000341695.9;ENST00000509031.5;ENST00000351450.10;ENST00000509426.5;ENST00000508518.5;ENST00000506815.5;ENST00000457404.6;ENST00000502833.5;ENST00000504028.5;ENST00000502596.5;ENST00000513649.1	88.523	74.582	74.269	0.998(9560)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_NBPF20_UP_LS0014	chr1:145414849|145420488:-	NBPF20	NBPF member 20	protein coding gene	no	.	2.507	1.127	0.000	0.098(935)	0.103(72)	0(0)	non tumor-specific	nAS	no
GRAMD1B_LS026	chr11:123606798|123608659:+	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	ENST00000638157.1;ENST00000635736.1;ENST00000638086.1;ENST00000456860.6;ENST00000322282.11;ENST00000529750.5;ENST00000532581.5;ENST00000529432.5;ENST00000534764.1;ENST00000646146.1	8.669	9.247	2.706	0.531(5091)	0.564(396)	0.768(13351)	non tumor-specific	exon_skip	yes
UN_DHRS3_LS0006	chr1:12568115|12568288:+	DHRS3	dehydrogenase/reductase 3	protein coding gene	no	.	2.013	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CPS1_LS011	chr2:210577510|210579714:+	CPS1	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	ENST00000430249.6;ENST00000233072.9;ENST00000619804.1;ENST00000497163.1	6.065	31.118	1.679	0.534(5118)	0.775(544)	0.687(11950)	non tumor-specific	nAS	yes
NCAPG2_LS042	chr7:158690722|158692842:-	NCAPG2	non-SMC condensin II complex subunit G2	protein coding gene	no	ENST00000432615.5;ENST00000356309.7;ENST00000409423.5;ENST00000467785.5;ENST00000409339.3	14.579	3.601	2.787	0.877(8400)	0.859(603)	0.878(15255)	non tumor-specific	exon_skip	yes
UN_HMGA1_LS0106	chr6:34245029|34245106:-	HMGA1	high mobility group AT-hook 1	protein coding gene	yes	.	3.335	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LSP1_LS020	chr11:1881596|1883419:+	LSP1	lymphocyte specific protein 1	protein coding gene	no	ENST00000311604.7;ENST00000421485.5;ENST00000446808.5;ENST00000381775.5;ENST00000405957.6;ENST00000451814.5;ENST00000457279.5;ENST00000429923.5;ENST00000406638.6;ENST00000612798.4;ENST00000417766.5;ENST00000472974.5;ENST00000432093.1;ENST00000485341.5	105.577	82.659	54.724	0.991(9493)	0.996(699)	0.969(16844)	non tumor-specific	exon_skip	yes
TMEM102_LS002	chr17:7436085|7436194:+	TMEM102	transmembrane protein 102	protein coding gene	no	ENST00000323206.1;ENST00000396568.1	17.313	10.492	5.151	0.946(9059)	0.966(678)	0.872(15152)	non tumor-specific	alt_3prime;intron_retention	yes
RCN2_LS001	chr15:76931985|76932361:+	RCN2	reticulocalbin 2	protein coding gene	no	ENST00000394885.7;ENST00000320963.9;ENST00000557805.1	13.090	7.912	23.501	0.988(9464)	0.996(699)	0.973(16912)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TSC1_UP_LS0076	chr9:133020178|133043480:-	TSC1	TSC complex subunit 1	protein coding gene	yes	.	158.191	26.248	0.000	0.007(65)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_IGHG2_LS0059	chr14:105643943|105644567:+	IGHG2	immunoglobulin heavy constant gamma 2 (G2m marker)	no	no	.	43.477	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
OAS3_LS007	chr12:112949205|112950693:+	OAS3	2'-5'-oligoadenylate synthetase 3	protein coding gene	no	ENST00000228928.11	21.112	8.504	3.584	0.898(8599)	0.929(652)	0.9(15651)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FAM129B_LS0187	chr9:127506395|127506535:+	FAM129B	niban apoptosis regulator 2	protein coding gene	no	.	7.008	3.539	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AD000671.2_LS0022	chr19:35740496|35741024:-	AD000671.2	-	protein coding gene	no	.	4.164	0.608	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACSS2_LS026	chr20:34913187|34913393:+	ACSS2	acyl-CoA synthetase short chain family member 2	protein coding gene	no	ENST00000481971.5;ENST00000488172.5;ENST00000481284.5;ENST00000360596.6;ENST00000480274.1;ENST00000493805.6;ENST00000473172.5;ENST00000253382.5;ENST00000468550.6	27.767	43.483	35.961	0.976(9353)	0.991(696)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
STAM_LS007	chr10:17684927|17688027:+	STAM	signal transducing adaptor molecule	protein coding gene	no	ENST00000377524.7;ENST00000445846.1;ENST00000486183.1	18.142	11.593	11.687	0.959(9191)	0.986(692)	0.973(16907)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC009542.2_LS0035	chr7:135315913|135317640:-	AC009542.2	-	pseudogene	no	.	1.486	0.349	0.000	0.033(312)	0.003(2)	0(0)	non tumor-specific	nAS	no
CEP120_LS013	chr5:123386667|123388304:-	CEP120	centrosomal protein 120	protein coding gene	no	ENST00000513565.6	1.354	0.421	0.823	0.034(325)	0.016(11)	0.397(6907)	non tumor-specific	alt_5prime	yes
UN_ELK3_UP_LS0002	chr12:96052746|96053344:+	ELK3	ETS transcription factor ELK3	protein coding gene	yes	.	4.023	0.361	0.000	0.012(115)	0.038(27)	0(0)	non tumor-specific	nAS	no
UN_TBC1D28_LS0002	chr17:18650453|18650614:+	TBC1D28	TBC1 domain family member 28	protein coding gene	no	.	1.645	0.366	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TUBB3_LS0046	chr16:89935300|89935733:-	TUBB3	tubulin beta 3 class III	protein coding gene	no	.	1.931	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EFCAB2_LS0046	chr1:245103172|245103615:+	EFCAB2	EF-hand calcium binding domain 2	protein coding gene	no	.	0.736	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PTENP1-AS_LS002	chr9:33678287|33680894:+	PTENP1-AS	PTENP1 antisense RNA	lncRNA gene	no	ENST00000627688.1	1.686	0.464	0.990	0.102(976)	0.095(67)	0.229(3985)	non tumor-specific	nAS	yes
UN_ATE1_LS0042	chr10:121924329|121926423:-	ATE1	arginyltransferase 1	protein coding gene	no	.	1.120	0.263	0.000	0.02(190)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
NADK2_LS004	chr5:36200280|36201106:-	NADK2	NAD kinase 2, mitochondrial	protein coding gene	no	ENST00000397338.5;ENST00000404560.7;ENST00000282512.7;ENST00000381937.8;ENST00000511613.5;ENST00000506945.5;ENST00000509225.1;ENST00000617628.4;ENST00000514504.5	33.609	36.414	33.665	0.987(9461)	0.996(699)	0.974(16937)	non tumor-specific	exon_skip	yes
UN_RF00156_UP_LS0030	chr4:131527288|131591270:+	RF00156	-	small non-coding RNA gene	no	.	1.902	0.043	0.000	0.009(82)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATAD3C_LS010	chr1:1456349|1457129:+	ATAD3C	ATPase family AAA domain containing 3C	protein coding gene	no	ENST00000378785.6	20.591	6.565	1.845	0.752(7209)	0.595(418)	0.656(11394)	non tumor-specific	exon_skip	yes
LOXL2_LS017	chr8:23332008|23333401:-	LOXL2	lysyl oxidase like 2	protein coding gene	no	ENST00000518472.1	0.021	0.023	0.682	0.09(860)	0.068(48)	0.025(434)	non tumor-specific	nAS	yes
DBX2_LS003	chr12:45036114|45050525:-	DBX2	developing brain homeobox 2	protein coding gene	no	ENST00000332700.6	1.883	0.147	1.683	0.105(1002)	0.131(92)	0.35(6078)	non tumor-specific	nAS	yes
ANXA4_LS020	chr2:69803515|69804533:+	ANXA4	annexin A4	protein coding gene	no	ENST00000460942.5	0.060	0.029	1.715	0.198(1895)	0.224(157)	0.649(11282)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ZDHHC13_LS0021	chr11:19159040|19163302:+	ZDHHC13	zinc finger DHHC-type palmitoyltransferase 13	protein coding gene	no	.	4.816	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_NOD1_LS0034	chr7:30453033|30455137:-	NOD1	nucleotide binding oligomerization domain containing 1	protein coding gene	no	.	2.931	0.664	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
SP140_LS002	chr2:230203693|230213654:+	SP140	SP140 nuclear body protein	protein coding gene	no	ENST00000441657.1	0.396	0.151	0.700	0.012(113)	0.023(16)	0.021(359)	non tumor-specific	exon_skip	yes
UN_KIRREL1_UP_LS0002	chr1:157957336|157960929:+	KIRREL1	kirre like nephrin family adhesion molecule 1	protein coding gene	no	.	4.319	0.147	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NLGN4Y_LS0024	chrY:14839167|14840413:+	NLGN4Y	neuroligin 4 Y-linked	protein coding gene	no	.	1.215	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC239859.5_LS0005	chr1:143487413|143488054:-	AC239859.5	-	pseudogene	no	.	3.161	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL3_LS0034	chr22:39314199|39314686:-	RPL3	ribosomal protein L3	protein coding gene	no	.	990.760	12.709	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
ZNF835_LS002	chr19:56665245|56671601:-	ZNF835	zinc finger protein 835	protein coding gene	no	ENST00000601659.1	0.140	0.096	0.890	0.288(2755)	0.444(312)	0.33(5733)	non tumor-specific	alt_5prime	yes
UN_RN7SKP225_UP_LS0010	chr9:99230404|99238002:+	RN7SKP225	RN7SK pseudogene 225	small non-coding RNA gene	no	.	1.980	0.548	0.000	0.051(487)	0.036(25)	0(0)	non tumor-specific	nAS	no
SNF8_LS006	chr17:48931717|48940924:-	SNF8	SNF8 subunit of ESCRT-II	protein coding gene	no	ENST00000509995.5	0.056	0.023	0.657	0.032(306)	0.03(21)	0.069(1206)	non tumor-specific	exon_skip	yes
RASSF8_LS002	chr12:25959148|26055236:+	RASSF8	Ras association domain family member 8	protein coding gene	yes	ENST00000405154.6	0.149	0.231	0.834	0.264(2533)	0.412(289)	0.323(5623)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FMO5_LS0025	chr1:147184630|147186953:-	FMO5	flavin containing dimethylaniline monoxygenase 5	protein coding gene	no	.	9.265	1.809	0.000	0.004(37)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
ASPM_LS020	chr1:197128665|197129187:-	ASPM	assembly factor for spindle microtubules	protein coding gene	no	ENST00000367409.8;ENST00000294732.11;ENST00000367408.5	4.770	1.217	1.252	0.485(4644)	0.127(89)	0.231(4008)	non tumor-specific	exon_skip	yes
HSD17B4_LS020	chr5:119492124|119493818:+	HSD17B4	hydroxysteroid 17-beta dehydrogenase 4	protein coding gene	no	ENST00000256216.11;ENST00000515320.5;ENST00000442060.7;ENST00000510025.6;ENST00000414835.7;ENST00000504811.6;ENST00000646058.1;ENST00000645832.1;ENST00000646355.1;ENST00000647335.1;ENST00000646554.1;ENST00000647342.1;ENST00000643250.1;ENST00000646125.1;ENST00000645099.1;ENST00000513628.5;ENST00000645702.1;ENST00000509514.5;ENST00000646646.1	113.298	130.421	83.778	0.978(9370)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
MINOS1_LS011	chr1:19614594|19622100:+	MINOS1	mitochondrial contact site and cristae organizing system subunit 10	protein coding gene	no	ENST00000462646.5	0.105	0.616	1.256	0.433(4152)	0.352(247)	0.655(11388)	non tumor-specific	nAS	yes
SEC31B_LS032	chr10:100501710|100502254:-	SEC31B	SEC31 homolog B, COPII coat complex component	protein coding gene	no	ENST00000479697.5	0.385	0.019	1.015	0.015(144)	0.01(7)	0.483(8388)	non tumor-specific	exon_skip	yes
PROM1_LS010	chr4:15984355|15985760:-	PROM1	prominin 1	protein coding gene	no	ENST00000447510.6;ENST00000540805.5;ENST00000539194.5;ENST00000505450.5;ENST00000508167.5;ENST00000510224.5;ENST00000513946.1	38.423	40.781	4.055	0.604(5790)	0.843(592)	0.663(11528)	non tumor-specific	exon_skip	yes
UN_FMNL2_LS0036	chr2:152613225|152614851:+	FMNL2	formin like 2	protein coding gene	no	.	0.792	0.001	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL13AP5_LS0016	chr10:96750341|96750450:-	RPL13AP5	ribosomal protein L13a pseudogene 5	pseudogene	no	.	4.690	2.315	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SNAP47_LS0043	chr1:227735499|227747694:+	SNAP47	synaptosome associated protein 47	protein coding gene	no	.	0.961	0.737	0.000	0.009(91)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
UN_AL139351.1_UP_LS0038	chr20:48054625|48057435:+	AL139351.1	-	lncRNA gene	no	.	3.311	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL355102.2_LS0155	chr14:96243233|96243265:-	AL355102.2	-	protein coding gene	no	.	3.905	2.622	0.000	0.009(84)	0.014(10)	0(0)	non tumor-specific	nAS	no
SDHB_LS012	chr1:17044888|17052255:-	SDHB	succinate dehydrogenase complex iron sulfur subunit B	protein coding gene	yes	ENST00000463045.2	0.029	0.029	0.595	0.075(714)	0.058(41)	0.046(797)	non tumor-specific	alt_5prime	yes
UN_GGT1_LS0031	chr22:24623916|24627471:+	GGT1	gamma-glutamyltransferase 1	protein coding gene	no	.	5.765	0.722	0.000	0.002(23)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
PIEZO2_LS055	chr18:10797522|10800337:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	ENST00000302079.10;ENST00000383408.6;ENST00000580640.5;ENST00000503781.7;ENST00000582913.5;ENST00000579112.1	2.133	0.589	1.340	0.333(3194)	0.446(313)	0.462(8023)	non tumor-specific	nAS	yes
ADGRB2_LS019	chr1:31733143|31735580:-	ADGRB2	adhesion G protein-coupled receptor B2	protein coding gene	no	ENST00000398556.7;ENST00000398542.5;ENST00000527361.5;ENST00000398556.7;ENST00000398542.5;ENST00000527361.5;ENST00000398556.7;ENST00000398542.5;ENST00000527361.5	10.368	2.956	3.071	0.555(5315)	0.429(301)	0.815(14175)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC02532_LS0026	chr6:106735418|106787259:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	.	1.827	0.637	0.000	0.003(24)	0.01(7)	0(0)	non tumor-specific	nAS	no
STIM1_LS012	chr11:3967682|4023873:+	STIM1	stromal interaction molecule 1	protein coding gene	no	ENST00000525403.5;ENST00000300737.8;ENST00000616714.4;ENST00000527651.5;ENST00000532610.5;ENST00000532919.5;ENST00000530554.5;ENST00000524822.5;ENST00000525055.5;ENST00000528656.5;ENST00000532990.1	38.235	30.883	51.211	0.973(9320)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
BMP4_LS003	chr14:53952176|53953276:-	BMP4	bone morphogenetic protein 4	protein coding gene	yes	ENST00000559501.1	0.627	0.355	1.254	0.487(4670)	0.635(446)	0.531(9236)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_STEAP1B_LS0084	chr7:22510564|22636326:-	STEAP1B	STEAP family member 1B	protein coding gene	no	.	1.381	0.170	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL157413.1_UP_LS0011	chr20:24805008|24805448:-	AL157413.1	-	lncRNA gene	no	.	3.347	0.312	0.000	0.026(246)	0.074(52)	0(0)	non tumor-specific	nAS	no
DRAM2_LS001	chr1:111118267|111118805:-	DRAM2	DNA damage regulated autophagy modulator 2	protein coding gene	no	ENST00000286692.8;ENST00000484310.5;ENST00000539140.5;ENST00000461449.5;ENST00000496430.6	51.171	35.137	68.719	0.992(9500)	0.993(697)	0.979(17021)	non tumor-specific	nAS	yes
UN_IGHV3-32_UP_LS0072	chr14:106335610|106360016:-	IGHV3-32	immunoglobulin heavy variable 3-32 (pseudogene)	no	no	.	459.517	33.269	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_VPS13C_LS0078	chr15:62022199|62023411:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	.	4.151	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
TFPI_LS005	chr2:187484987|187488337:-	TFPI	tissue factor pathway inhibitor	protein coding gene	no	ENST00000392365.5;ENST00000233156.8;ENST00000481132.5;ENST00000409676.5;ENST00000339091.8;ENST00000481389.1	48.273	61.788	37.622	0.965(9249)	0.997(700)	0.953(16572)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WDR5_LS0035	chr9:134159393|134159438:-	WDR5	WD repeat domain 5	protein coding gene	no	.	7.302	0.893	0.000	0.012(112)	0.006(4)	0(0)	non tumor-specific	nAS	no
RFFL_LS006	chr17:35016580|35021371:-	RFFL	ring finger and FYVE like domain containing E3 ubiquitin protein ligase	protein coding gene	no	ENST00000584655.5;ENST00000581039.1	0.350	0.569	1.342	0.747(7158)	0.838(588)	0.588(10218)	non tumor-specific	exon_skip	yes
DCC_LS014	chr18:52934890|53063305:+	DCC	DCC netrin 1 receptor	protein coding gene	yes	ENST00000578949.1	0.000	0.000	0.686	0.009(84)	0.014(10)	0(5)	non tumor-specific	nAS	yes
ANO4_LS019	chr12:100987670|101020034:+	ANO4	anoctamin 4	protein coding gene	no	ENST00000549155.6;ENST00000644049.1;ENST00000392979.7;ENST00000392977.7;ENST00000549234.1	5.066	2.309	2.341	0.153(1468)	0.115(81)	0.374(6496)	non tumor-specific	exon_skip	yes
UN_NLRP3_UP_LS0012	chr1:247332960|247333138:+	NLRP3	NLR family pyrin domain containing 3	protein coding gene	no	.	2.355	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL36P19_UP_LS0003	chr13:43113283|43158633:+	RPL36P19	ribosomal protein L36 pseudogene 19	pseudogene	no	.	3.181	0.753	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
FO393400.1_LS017	chr20:32728142|32743308:-	FO393400.1	-	protein coding gene	no	ENST00000642630.1;ENST00000646357.1;ENST00000642484.1	9.864	7.702	42.043	0.993(9515)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZCWPW1_LS023	chr7:100419883|100420622:-	ZCWPW1	zinc finger CW-type and PWWP domain containing 1	protein coding gene	no	ENST00000398027.6;ENST00000360951.8;ENST00000464510.5	2.804	2.393	3.692	0.789(7562)	0.936(657)	0.932(16199)	non tumor-specific	alt_3prime;exon_skip	yes
IL11_LS001	chr19:55366177|55368210:-	IL11	interleukin 11	protein coding gene	no	ENST00000264563.6;ENST00000590625.5;ENST00000585513.1	2.703	1.623	1.424	0.334(3196)	0.161(113)	0.431(7498)	non tumor-specific	nAS	yes
ZMYND8_LS025	chr20:47282217|47283571:-	ZMYND8	zinc finger MYND-type containing 8	protein coding gene	no	ENST00000311275.11;ENST00000536340.5;ENST00000360911.7;ENST00000446994.6;ENST00000355972.8;ENST00000396281.8;ENST00000619049.4;ENST00000611941.4;ENST00000372023.7;ENST00000458360.6;ENST00000467200.6;ENST00000262975.8;ENST00000471951.6;ENST00000352431.6;ENST00000540497.5;ENST00000461685.5;ENST00000617418.4;ENST00000468376.2	22.023	13.445	15.827	0.953(9131)	0.973(683)	0.971(16881)	non tumor-specific	alt_3prime;exon_skip	yes
CBR4_LS005	chr4:168864586|168894570:-	CBR4	carbonyl reductase 4	protein coding gene	no	ENST00000510042.5	0.113	0.174	1.503	0.284(2721)	0.248(174)	0.637(11071)	non tumor-specific	alt_3prime;exon_skip	yes
MAP3K12_LS014	chr12:53486622|53486947:-	MAP3K12	mitogen-activated protein kinase kinase kinase 12	protein coding gene	no	ENST00000267079.6;ENST00000547488.5;ENST00000547035.5;ENST00000552365.1;ENST00000547151.1	6.328	3.388	16.310	0.828(7932)	0.856(601)	0.969(16847)	non tumor-specific	intron_retention	yes
UN_RPL13AP5_LS0094	chr10:96750671|96750708:-	RPL13AP5	ribosomal protein L13a pseudogene 5	pseudogene	no	.	47.133	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AKAP9_LS0065	chr7:92095173|92095511:+	AKAP9	A-kinase anchoring protein 9	protein coding gene	yes	.	0.670	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL36AP29_UP_LS0003	chr7:15686288|15688401:+	RPL36AP29	ribosomal protein L36a pseudogene 29	pseudogene	no	.	1.349	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
KDR_LS014	chr4:55098272|55098697:-	KDR	kinase insert domain receptor	protein coding gene	no	ENST00000645273.1;ENST00000263923.5;ENST00000647068.1	21.049	23.604	10.794	0.854(8178)	0.964(677)	0.905(15735)	non tumor-specific	nAS	yes
UN_PDE4D_LS0028	chr5:59215968|59216571:-	PDE4D	phosphodiesterase 4D	protein coding gene	no	.	2.436	0.899	0.000	0.004(37)	0.046(32)	0(0)	non tumor-specific	nAS	no
MTOR_LS009	chr1:11114887|11115396:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000376838.5;ENST00000361445.8;ENST00000490931.1;ENST00000455339.1	49.248	31.572	41.484	0.994(9522)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
RPAP3_LS015	chr12:47696403|47697597:-	RPAP3	RNA polymerase II associated protein 3	protein coding gene	no	ENST00000005386.7;ENST00000432584.7;ENST00000380650.4;ENST00000548296.1	19.054	10.254	10.566	0.981(9395)	0.991(696)	0.973(16904)	non tumor-specific	exon_skip	yes
UN_SAMMSON_LS0027	chr3:70447037|70453629:-	SAMMSON	survival associated mitochondrial melanoma specific oncogenic non-coding RNA	lncRNA gene	no	.	4.591	0.452	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRI1_LS013	chr19:13766129|13768561:+	MRI1	methylthioribose-1-phosphate isomerase 1	protein coding gene	no	ENST00000591688.5;ENST00000040663.7;ENST00000591688.5;ENST00000040663.7	9.317	7.558	5.178	0.948(9079)	0.973(683)	0.953(16561)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PHIP_LS002	chr6:78945497|78946001:-	PHIP	pleckstrin homology domain interacting protein	protein coding gene	no	ENST00000275034.4;ENST00000479165.1	16.608	10.465	14.852	0.923(8847)	0.964(677)	0.967(16816)	non tumor-specific	alt_3prime	yes
DUSP2_LS003	chr2:96144882|96144967:-	DUSP2	dual specificity phosphatase 2	protein coding gene	no	ENST00000288943.4	5.324	2.872	5.582	0.894(8568)	0.956(671)	0.898(15608)	non tumor-specific	intron_retention	yes
UN_KLHDC9_LS0006	chr1:161099505|161099601:+	KLHDC9	kelch domain containing 9	protein coding gene	no	.	5.611	2.442	0.000	0.002(15)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_MDN1_LS0052	chr6:89672367|89672547:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	.	2.140	0.224	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_VWA2_LS0019	chr10:114272934|114276245:+	VWA2	von Willebrand factor A domain containing 2	protein coding gene	no	.	3.681	0.265	0.000	0.017(167)	0.003(2)	0(0)	non tumor-specific	nAS	no
LOXHD1_LS014	chr18:46518256|46522101:-	LOXHD1	lipoxygenase homology domains 1	protein coding gene	no	ENST00000582408.6;ENST00000536736.5;ENST00000335730.6	1.600	0.140	0.990	0.011(106)	0.014(10)	0.193(3359)	non tumor-specific	exon_skip	yes
MYEF2_LS026	chr15:48166027|48167342:-	MYEF2	myelin expression factor 2	protein coding gene	no	ENST00000616409.4	2.732	1.353	0.645	0.183(1749)	0.167(117)	0.059(1027)	non tumor-specific	nAS	yes
UN_KLHDC3_LS0002	chr6:43014351|43017134:+	KLHDC3	kelch domain containing 3	protein coding gene	no	.	8.536	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
AC109495.1_LS001	chr16:17540842|17540947:-	AC109495.1	-	lncRNA gene	no	ENST00000568026.1	0.004	0.000	0.495	0(3)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_CDC123_LS0032	chr10:12249718|12250314:+	CDC123	cell division cycle 123	protein coding gene	no	.	37.865	3.432	0.000	0.009(91)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
GAS5_LS013	chr1:173866206|173866528:-	GAS5	growth arrest specific 5	lncRNA gene	yes	ENST00000449289.5;ENST00000448718.5;ENST00000436285.5;ENST00000456812.6;ENST00000450589.5;ENST00000412059.5;ENST00000431268.5;ENST00000436656.5;ENST00000430245.5;ENST00000422183.5;ENST00000454068.5;ENST00000449589.5;ENST00000451607.5;ENST00000422008.5;ENST00000442067.5;ENST00000455838.5;ENST00000416952.5;ENST00000432536.5;ENST00000456293.5;ENST00000443799.5;ENST00000425771.5	79.662	42.177	591.697	0.999(9571)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
OPN1SW_LS004	chr7:128775154|128775439:-	OPN1SW	opsin 1, short wave sensitive	protein coding gene	no	ENST00000249389.2	2.058	1.182	0.850	0.014(137)	0.009(6)	0.025(432)	non tumor-specific	nAS	yes
UN_LINC02282_LS0001	chr14:28784530|28784862:-	LINC02282	long intergenic non-protein coding RNA 2282	lncRNA gene	no	.	1.830	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCD3_LS018	chr7:151243701|151275114:-	SMARCD3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein coding gene	no	ENST00000469154.5	0.191	0.186	1.515	0.315(3019)	0.37(260)	0.597(10374)	non tumor-specific	exon_skip	yes
UN_AL161636.1_UP_LS0034	chr1:152985434|153032478:+	AL161636.1	-	lncRNA gene	no	.	53.030	52.785	0.000	0.014(137)	0.004(3)	0(0)	non tumor-specific	nAS	no
POLR1C_LS018	chr6:43521048|43529249:+	POLR1C	RNA polymerase I and III subunit C	protein coding gene	no	ENST00000304004.7;ENST00000607635.2	1.098	1.213	2.286	0.866(8295)	0.906(636)	0.832(14463)	non tumor-specific	exon_skip	yes
UN_MYCBP2_LS0070	chr13:77288376|77290725:-	MYCBP2	MYC binding protein 2	protein coding gene	no	.	4.359	0.095	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
SAG_LS003	chr2:233308022|233316075:+	SAG	S-antigen visual arrestin	protein coding gene	yes	ENST00000462487.5	0.012	0.000	0.862	0.001(7)	0(0)	0(5)	non tumor-specific	nAS	yes
AC019197.1_LS023	chr2:165130204|165139599:+	AC019197.1	-	lncRNA gene	no	ENST00000629817.2	3.580	0.247	0.947	0.015(143)	0.037(26)	0.077(1343)	non tumor-specific	nAS	yes
UN_FAM208B_LS0050	chr10:5762646|5763002:+	FAM208B	transcription activation suppressor family member 2	protein coding gene	no	.	11.419	1.473	0.000	0.007(63)	0.011(8)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CARMIL3_LS012	chr14:24056708|24056915:+	CARMIL3	capping protein regulator and myosin 1 linker 3	protein coding gene	no	ENST00000342740.5	3.078	1.249	2.028	0.201(1930)	0.051(36)	0.594(10325)	non tumor-specific	alt_3prime	yes
UN_LINC02044_UP_LS0003	chr3:113210182|113210400:-	LINC02044	long intergenic non-protein coding RNA 2044	lncRNA gene	no	.	2.406	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
GNPTAB_LS002	chr12:101747241|101753372:-	GNPTAB	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein coding gene	no	.;.;.	2.005	0.101	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SPSB3_LS010	chr16:1781495|1793637:-	SPSB3	splA/ryanodine receptor domain and SOCS box containing 3	protein coding gene	no	ENST00000569769.1	0.032	0.001	0.670	0.565(5412)	0.534(375)	0.041(712)	non tumor-specific	nAS	yes
TRIR_LS002	chr19:12731068|12734313:-	TRIR	telomerase RNA component interacting RNase	protein coding gene	no	ENST00000592273.5	0.123	0.133	0.837	0.881(8445)	0.879(617)	0.324(5639)	non tumor-specific	exon_skip	yes
RASGRP4_LS015	chr19:38417166|38418391:-	RASGRP4	RAS guanyl releasing protein 4	protein coding gene	no	ENST00000588404.5	0.052	0.106	0.906	0.033(317)	0.037(26)	0.129(2238)	non tumor-specific	alt_3prime	yes
ABCC2_LS015	chr10:99804273|99805382:+	ABCC2	ATP binding cassette subfamily C member 2	protein coding gene	no	ENST00000647814.1;ENST00000370449.9	6.615	5.640	1.130	0.208(1992)	0.236(166)	0.56(9738)	non tumor-specific	alt_5prime	yes
UN_AP000943.2_LS0004	chr11:94640326|94642000:+	AP000943.2	-	lncRNA gene	no	.	2.972	0.103	0.000	0.008(74)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM110A_LS010	chr20:841316|844711:+	FAM110A	family with sequence similarity 110 member A	protein coding gene	no	.;.;.	1.715	0.473	0.000	0.021(205)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC024405.2_LS0003	chr11:50324663|50357081:+	AC024405.2	-	pseudogene	no	.	3.148	10.880	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
WNK3_LS001	chrX:54198653|54201991:-	WNK3	WNK lysine deficient protein kinase 3	protein coding gene	no	ENST00000375169.7;ENST00000354646.6;ENST00000375159.6;ENST00000620763.1	10.302	1.107	1.111	0.282(2706)	0.365(256)	0.466(8102)	non tumor-specific	nAS	yes
UN_LINC00221_UP_LS0398	chr14:106360003|106790911:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	18.865	9.562	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LPCAT4_LS0038	chr15:34363732|34364013:-	LPCAT4	lysophosphatidylcholine acyltransferase 4	protein coding gene	no	.	15.144	4.745	0.000	0.016(158)	0.016(11)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FHOD3_LS022	chr18:36693423|36709095:+	FHOD3	formin homology 2 domain containing 3	protein coding gene	no	ENST00000257209.8;ENST00000589114.5;ENST00000590592.5;ENST00000359247.8;ENST00000592930.5;ENST00000587493.1	11.782	13.878	7.692	0.779(7463)	0.858(602)	0.88(15302)	non tumor-specific	exon_skip	yes
CHRND_LS015	chr2:232534342|232535130:+	CHRND	cholinergic receptor nicotinic delta subunit	protein coding gene	no	ENST00000441621.6;ENST00000543200.5;ENST00000258385.7;ENST00000446616.1	9.396	2.168	1.397	0.035(336)	0.033(23)	0.124(2152)	non tumor-specific	exon_skip	yes
UN_AC127502.3_LS0004	chr15:30508557|30510128:+	AC127502.3	-	pseudogene	no	.	3.093	0.338	0.000	0.022(213)	0.043(30)	0(0)	non tumor-specific	nAS	no
IFT172_LS064	chr2:27484266|27485018:-	IFT172	intraflagellar transport 172	protein coding gene	no	ENST00000260570.7;ENST00000507184.5;ENST00000511842.5;ENST00000359466.10;ENST00000416524.2;ENST00000476264.6;ENST00000475476.2	3.920	2.730	5.418	0.835(8003)	0.89(625)	0.926(16089)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CCDC187_LS0028	chr9:136275004|136276194:-	CCDC187	coiled-coil domain containing 187	protein coding gene	no	.	2.237	2.350	0.000	0.005(50)	0.016(11)	0(0)	non tumor-specific	nAS	no
TSPAN14_LS025	chr10:80507374|80512144:+	TSPAN14	tetraspanin 14	protein coding gene	no	ENST00000341863.10	0.592	0.570	0.750	0.605(5793)	0.594(417)	0.282(4903)	non tumor-specific	alt_5prime;exon_skip	yes
ORC4_LS009	chr2:147952524|147955347:-	ORC4	origin recognition complex subunit 4	protein coding gene	no	ENST00000540442.5;ENST00000535373.5;ENST00000536575.5;ENST00000264169.6;ENST00000392857.9;ENST00000478904.5;ENST00000461711.5;ENST00000496670.6;ENST00000490200.5	21.434	13.300	21.558	0.986(9444)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC02374_LS001	chr4:187202142|187202982:+	LINC02374	long intergenic non-protein coding RNA 2374	lncRNA gene	no	ENST00000503637.1	0.521	0.000	0.798	0(2)	0(0)	0.002(30)	non tumor-specific	nAS	yes
UN_PBX4_LS0008	chr19:19570417|19570687:-	PBX4	PBX homeobox 4	protein coding gene	no	.	1.446	0.109	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MTG2_LS0020	chr20:62188881|62193198:+	MTG2	mitochondrial ribosome associated GTPase 2	protein coding gene	no	.	1.101	0.032	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
MORF4L1_LS011	chr15:78876586|78878213:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	ENST00000560422.5	0.001	0.038	0.659	0.615(5893)	0.563(395)	0.065(1128)	non tumor-specific	nAS	yes
PLIN1_LS004	chr15:89667793|89669500:-	PLIN1	perilipin 1	protein coding gene	no	ENST00000300055.9;ENST00000430628.2	6.554	20.624	4.712	0.206(1974)	0.476(334)	0.877(15244)	non tumor-specific	alt_3prime	yes
UN_IQCG_LS0056	chr3:197938772|197943778:-	IQCG	IQ motif containing G	protein coding gene	no	.	4.918	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ERG_LS0019	chr21:38539271|38542925:+	ERG	ETS transcription factor ERG	protein coding gene	yes	.	2.109	0.993	0.000	0.011(108)	0.068(48)	0(0)	non tumor-specific	nAS	no
UN_RNU6-54P_UP_LS0021	chr13:70410121|70430423:+	RNU6-54P	RNA, U6 small nuclear 54, pseudogene	small non-coding RNA gene	no	.	6.516	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
MEI1_LS012	chr22:41743194|41744973:+	MEI1	meiotic double-stranded break formation protein 1	protein coding gene	no	ENST00000401548.7;ENST00000540833.1	5.813	0.000	0.674	0.029(282)	0(0)	0.056(967)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAP1GAP_LS0037	chr1:21608936|21610120:-	RAP1GAP	RAP1 GTPase activating protein	protein coding gene	yes	.	2.990	0.634	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_RPL10P10_UP_LS0024	chr6:54840849|54846250:-	RPL10P10	ribosomal protein L10 pseudogene 10	pseudogene	no	.	2.265	0.303	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC6A5_LS001	chr11:20599675|20601129:+	SLC6A5	solute carrier family 6 member 5	protein coding gene	no	ENST00000525748.5;ENST00000298923.11	4.223	0.000	0.824	0.002(15)	0(0)	0.004(77)	non tumor-specific	nAS	yes
UN_AC016205.1_LS0059	chr18:39674160|39751329:-	AC016205.1	-	lncRNA gene	no	.	1.956	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTMS_LS0228	chr12:6770693|6770748:-	PTMS	parathymosin	protein coding gene	no	.	12.559	0.457	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPIEL_LS031	chr1:39554392|39559216:-	PPIEL	peptidylprolyl isomerase E like pseudogene	pseudogene	no	ENST00000331856.7	3.111	0.191	0.000	0.033(316)	0.007(5)	0(0)	non tumor-specific	nAS	yes
SLC22A23_LS006	chr6:3283975|3284936:-	SLC22A23	solute carrier family 22 member 23	protein coding gene	no	ENST00000436008.6	0.126	0.883	1.433	0.391(3748)	0.413(290)	0.486(8453)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ISY1-RAB43_LS0043	chr3:129090409|129090433:-	ISY1-RAB43	ISY1-RAB43 readthrough	protein coding gene	no	.	8.761	1.851	0.000	0.013(123)	0.01(7)	0(0)	non tumor-specific	nAS	no
PTPN3_LS018	chr9:109420600|109426950:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	ENST00000446349.5	3.066	3.806	3.849	0.794(7603)	0.932(654)	0.735(12772)	non tumor-specific	exon_skip	yes
AC131009.2_LS001	chr12:131857492|131863051:+	AC131009.2	-	lncRNA gene	no	ENST00000542763.2	0.202	0.082	0.852	0.01(95)	0.007(5)	0.011(186)	non tumor-specific	nAS	yes
AC098934.2_LS001	chr1:202861809|202872200:+	AC098934.2	-	pseudogene	no	ENST00000456105.2	0.363	0.119	0.691	0.018(173)	0.058(41)	0.004(77)	non tumor-specific	nAS	yes
AC114912.1_LS001	chr4:23105616|23120320:+	AC114912.1	-	lncRNA gene	no	ENST00000503394.1	1.803	0.000	0.724	0.011(102)	0(0)	0.015(256)	non tumor-specific	nAS	yes
UN_GADD45GIP1_LS0015	chr19:12954393|12954436:-	GADD45GIP1	GADD45G interacting protein 1	protein coding gene	yes	.	107.457	10.729	0.000	0.006(62)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_BAZ1A_LS0023	chr14:34792835|34794749:-	BAZ1A	bromodomain adjacent to zinc finger domain 1A	protein coding gene	no	.	9.114	0.071	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HBP1_LS024	chr7:107189448|107190173:+	HBP1	HMG-box transcription factor 1	protein coding gene	yes	ENST00000468410.5;ENST00000222574.8;ENST00000485846.5;ENST00000463202.5;ENST00000498408.1	81.227	67.063	45.466	0.984(9428)	0.994(698)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ZNF788P_LS004	chr19:12092470|12110305:+	ZNF788P	zinc finger family member 788, pseudogene	pseudogene	no	ENST00000430298.7	2.551	1.555	1.352	0.563(5391)	0.755(530)	0.608(10560)	non tumor-specific	nAS	yes
UN_SEC24B_LS0008	chr4:109445066|109462901:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	.	1.182	0.187	0.000	0.006(54)	0.007(5)	0(0)	non tumor-specific	nAS	no
LRRK2_LS022	chr12:40278016|40278091:+	LRRK2	leucine rich repeat kinase 2	protein coding gene	no	ENST00000416796.5;ENST00000343742.6;ENST00000298910.11	7.744	10.149	3.645	0.413(3956)	0.759(533)	0.864(15026)	non tumor-specific	nAS	yes
UN_RFX7_LS0035	chr15:56159837|56160611:+	RFX7	regulatory factor X7	protein coding gene	no	.	1.417	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
LY6K_LS004	chr8:142701713|142702500:+	LY6K	lymphocyte antigen 6 family member K	protein coding gene	no	ENST00000518841.5	2.090	0.193	0.863	0.306(2935)	0.265(186)	0.227(3946)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_HEPHL1_LS0012	chr11:94067743|94082945:-	HEPHL1	hephaestin like 1	protein coding gene	no	.	0.894	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SRRM1_LS0023	chr1:24655021|24669263:-	SRRM1	serine and arginine repetitive matrix 1	protein coding gene	no	.	1.100	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAM208A_LS008	chr3:56628614|56628744:-	FAM208A	transcription activation suppressor	protein coding gene	no	ENST00000461863.1	0.373	0.172	0.669	0.05(477)	0.128(90)	0.044(765)	non tumor-specific	nAS	yes
UN_STK32C_LS0031	chr10:132324373|132328787:-	STK32C	serine/threonine kinase 32C	protein coding gene	no	.	0.614	0.145	0.000	0.007(67)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
KIF2C_LS024	chr1:44762295|44762545:+	KIF2C	kinesin family member 2C	protein coding gene	no	ENST00000423289.1	0.058	0.007	0.581	0.106(1012)	0.006(4)	0.021(369)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
KIFC3_LS058	chr16:57795141|57798072:-	KIFC3	kinesin family member C3	protein coding gene	no	ENST00000379655.8;ENST00000445690.6;ENST00000541240.5;ENST00000562503.5;ENST00000566648.5;ENST00000565684.5;ENST00000566914.1;ENST00000567059.5;ENST00000563028.1;ENST00000564891.1	5.243	4.126	13.123	0.934(8952)	0.981(689)	0.965(16777)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SOBP_LS0029	chr6:107658085|107658207:+	SOBP	sine oculis binding protein homolog	protein coding gene	no	.	2.096	0.224	0.000	0.015(147)	0.011(8)	0(0)	non tumor-specific	nAS	no
PHLPP1_LS021	chr18:62972708|62975397:+	PHLPP1	PH domain and leucine rich repeat protein phosphatase 1	protein coding gene	yes	ENST00000262719.9	30.469	19.521	10.580	0.951(9110)	0.986(692)	0.973(16918)	non tumor-specific	exon_skip	yes
UN_AL139220.2_LS0004	chr1:44031947|44039907:+	AL139220.2	-	lncRNA gene	no	.	1.130	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
ATP6AP1L_LS017	chr5:82344465|82348591:+	ATP6AP1L	ATPase H+ transporting accessory protein 1 like	protein coding gene	no	ENST00000508366.5	1.536	0.001	0.686	0.003(31)	0.003(2)	0.089(1542)	non tumor-specific	alt_5prime;exon_skip	yes
RAB11FIP3_LS006	chr16:475045|482525:+	RAB11FIP3	RAB11 family interacting protein 3	protein coding gene	no	ENST00000450428.5;ENST00000483002.1;ENST00000449879.5;ENST00000450428.5;ENST00000483002.1;ENST00000449879.5	0.435	1.007	0.810	0.678(6494)	0.674(473)	0.055(963)	non tumor-specific	alt_5prime;exon_skip	yes
CRY2_LS006	chr11:45858381|45858731:+	CRY2	cryptochrome circadian regulator 2	protein coding gene	no	ENST00000533779.1	0.016	0.008	0.684	0.05(483)	0.127(89)	0.037(647)	non tumor-specific	nAS	yes
UN_CDC42EP4_LS0090	chr17:73286298|73286349:+	CDC42EP4	CDC42 effector protein 4	protein coding gene	no	.	1.239	0.244	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
CIDEC_LS004	chr3:9870322|9870445:-	CIDEC	cell death inducing DFFA like effector c	protein coding gene	no	ENST00000618572.4;ENST00000430427.5	0.448	0.636	1.809	0.016(156)	0.118(83)	0.143(2479)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MAGI3_LS0026	chr1:113522510|113549515:+	MAGI3	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein coding gene	no	.	0.557	0.001	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF536_LS009	chr19:30534999|30547943:+	ZNF536	zinc finger protein 536	protein coding gene	no	ENST00000585628.5;ENST00000355537.3	3.927	1.295	2.207	0.107(1029)	0.124(87)	0.524(9101)	non tumor-specific	exon_skip	yes
GTF3C5_LS007	chr9:133043926|133050783:+	GTF3C5	general transcription factor IIIC subunit 5	protein coding gene	no	ENST00000372097.9;ENST00000440319.5;ENST00000372108.9;ENST00000342018.12;ENST00000439697.1	58.075	30.083	55.646	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CLBA1_LS0004	chr14:104989707|104990626:+	CLBA1	clathrin binding box of aftiphilin containing 1	protein coding gene	no	.	1.287	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SCIN_LS021	chr7:12622893|12625010:+	SCIN	scinderin	protein coding gene	no	ENST00000341757.9;ENST00000297029.9;ENST00000523729.5;ENST00000519209.5;ENST00000486980.5;ENST00000473722.5;ENST00000476649.1	26.714	42.492	3.303	0.795(7613)	0.852(598)	0.686(11926)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01206_LS020	chr3:182000506|182001118:+	LINC01206	long intergenic non-protein coding RNA 1206	lncRNA gene	no	ENST00000482787.7;ENST00000629138.2;ENST00000628718.2;ENST00000629026.1;ENST00000625253.2;ENST00000628934.2	1.467	0.017	0.703	0.025(242)	0.001(1)	0.01(181)	non tumor-specific	nAS	yes
BRD2_LS004	chr6:32970433|32971595:+	BRD2	bromodomain containing 2	protein coding gene	no	ENST00000580234.1	0.266	0.077	0.713	0.68(6518)	0.738(518)	0.226(3931)	non tumor-specific	exon_skip	yes
UN_BMPR1A_LS0041	chr10:86924641|86929993:+	BMPR1A	bone morphogenetic protein receptor type 1A	protein coding gene	yes	.	1.907	0.244	0.000	0.003(30)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LINC01278_LS0059	chrX:63443586|63560832:-	LINC01278	long intergenic non-protein coding RNA 1278	lncRNA gene	no	.	0.950	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP000322.2_UP_LS0002	chr21:34364151|34379428:+	AP000322.2	-	lncRNA gene	no	.	9.476	37.516	0.000	0.005(44)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_AL138826.1_UP_LS0006	chr6:49803073|49819123:+	AL138826.1	-	lncRNA gene	no	.	2.628	2.065	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
IKZF2_LS007	chr2:213022130|213049713:-	IKZF2	IKAROS family zinc finger 2	protein coding gene	yes	ENST00000451136.6;ENST00000342002.6;ENST00000434687.5;ENST00000374319.8;ENST00000453575.5;ENST00000412444.5;ENST00000439848.5;ENST00000374326.7;ENST00000431520.5	2.507	1.284	1.664	0.431(4133)	0.557(391)	0.662(11499)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC090503.1_UP_LS0011	chr12:73317806|73382376:-	AC090503.1	-	lncRNA gene	no	.	8.456	0.858	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR54_LS001	chr2:74421794|74422870:+	WDR54	WD repeat domain 54	protein coding gene	no	.;.	1.599	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LIPA_LS0105	chr10:89392717|89399895:+	LIPA	secretoglobin family 1D member 1	protein coding gene	no	.	3.895	2.687	0.000	0.2(1912)	0.353(248)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_SMAGP_LS0023	chr12:51270193|51270718:+	SMAGP	small cell adhesion glycoprotein	protein coding gene	no	.	1.076	0.065	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_IGF2_LS0161	chr11:2130126|2130162:-	IGF2	insulin like growth factor 2	protein coding gene	yes	.	735.462	15.806	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_C1orf54_LS0039	chr1:150269312|150272284:+	C1orf54	chromosome 1 open reading frame 54	protein coding gene	no	.	0.696	0.017	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
HECTD4_LS066	chr12:112254162|112256320:-	HECTD4	HECT domain E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000550722.5;ENST00000377560.9;ENST00000311694.7	4.930	3.436	4.157	0.625(5988)	0.769(540)	0.911(15832)	non tumor-specific	alt_3prime	yes
ZNF260_LS003	chr19:36515699|36517286:-	ZNF260	zinc finger protein 260	protein coding gene	no	ENST00000588993.1	0.830	0.195	0.638	0.014(130)	0.009(6)	0.012(205)	non tumor-specific	exon_skip;mutex_exons	yes
JAKMIP3_LS015	chr10:132148050|132149412:+	JAKMIP3	Janus kinase and microtubule interacting protein 3	protein coding gene	no	ENST00000298622.8;ENST00000477275.1	2.535	1.213	2.003	0.092(881)	0.063(44)	0.692(12020)	non tumor-specific	nAS	yes
UN_TRIM14_LS0023	chr9:98084245|98087109:+	TRIM14	tripartite motif containing 14	protein coding gene	no	.	1.665	0.043	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AGTPBP1_LS0042	chr9:85712566|85741885:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	.	0.906	0.006	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_ITIH5_LS0012	chr10:7569784|7576453:-	ITIH5	inter-alpha-trypsin inhibitor heavy chain 5	protein coding gene	no	.	4.269	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC02081_LS006	chr17:78618208|78624192:-	LINC02081	S-phase cancer associated transcript 1	lncRNA gene	no	ENST00000647961.1;ENST00000649791.1;ENST00000648404.1	2.916	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_SLC6A21P_UP_LS0015	chr19:49294553|49332054:-	SLC6A21P	solute carrier family 6 member 21, pseudogene	pseudogene	no	.	0.900	0.932	0.000	0.002(17)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_SMIM20_LS0002	chr4:25862153|25904288:+	SMIM20	small integral membrane protein 20	protein coding gene	no	.	2.347	0.321	0.000	0.01(95)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_VIM_LS0057	chr10:17229583|17229858:-	VIM	vimentin	protein coding gene	yes	.	17.447	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TNNI1_LS004	chr1:201411533|201413032:-	TNNI1	troponin I1, slow skeletal type	protein coding gene	no	ENST00000622580.4;ENST00000361379.8;ENST00000336092.8;ENST00000367312.5;ENST00000555340.6;ENST00000556362.1	18.059	33.363	2.509	0.099(947)	0.246(173)	0.69(11997)	non tumor-specific	nAS	yes
TCEA1_LS013	chr8:54000050|54010430:-	TCEA1	transcription elongation factor A1 pseudogene 2	protein coding gene	no	ENST00000521604.6;ENST00000522397.5;ENST00000640382.1;ENST00000520534.5;ENST00000517351.5;ENST00000521836.1;ENST00000518784.5	94.432	55.777	44.473	0.991(9495)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_PUS1_LS0040	chr12:131939275|131941300:+	PUS1	pseudouridine synthase 1	protein coding gene	no	.	10.658	1.889	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SUSD4_LS0002	chr1:223223631|223225579:-	SUSD4	sushi domain containing 4	protein coding gene	no	.	2.735	0.074	0.000	0.008(72)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM39A_LS0023	chr3:119463472|119468735:-	TMEM39A	transmembrane protein 39A	protein coding gene	no	.	0.815	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PSMC1_UP_LS0003	chr14:90198818|90256449:+	PSMC1	proteasome 26S subunit, ATPase 1	protein coding gene	no	.	3.086	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
Z97192.1_LS001	chr22:49548752|49552652:+	Z97192.1	-	lncRNA gene	no	ENST00000391625.2	0.234	0.108	0.714	0.009(85)	0.004(3)	0(6)	non tumor-specific	nAS	yes
CAMSAP2_LS015	chr1:200850234|200852541:+	CAMSAP2	calmodulin regulated spectrin associated protein family member 2	protein coding gene	no	ENST00000358823.6;ENST00000413307.6;ENST00000236925.8	23.512	16.626	20.787	0.937(8978)	0.972(682)	0.947(16453)	non tumor-specific	alt_5prime	yes
UN_ACTR1B_LS0002	chr2:97656054|97656131:+	ACTR1B	actin related protein 1B	protein coding gene	no	.	1.492	0.535	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
DIAPH2-AS1_LS007	chrX:97603011|97617112:-	DIAPH2-AS1	DIAPH2 antisense RNA 1	lncRNA gene	no	ENST00000445414.1;ENST00000542084.1	0.773	0.139	0.824	0.128(1231)	0.073(51)	0.078(1362)	non tumor-specific	nAS	yes
UN_OR6C71P_UP_LS0001	chr12:55410604|55411721:-	OR6C71P	olfactory receptor family 6 subfamily C member 71 pseudogene	pseudogene	no	.	8.664	0.154	0.000	0.008(72)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL4A3BP_LS023	chr5:75426478|75459065:-	COL4A3BP	ceramide transporter 1	protein coding gene	no	ENST00000644912.1;ENST00000644445.1;ENST00000644072.1;ENST00000261415.12;ENST00000642809.1;ENST00000380494.10;ENST00000642556.1;ENST00000646713.1;ENST00000644516.1;ENST00000645866.1;ENST00000645483.1;ENST00000642225.1;ENST00000405807.9;ENST00000643780.1;ENST00000643158.1;ENST00000646511.1;ENST00000644377.1;ENST00000647512.1;ENST00000646302.1;ENST00000643773.1	24.672	21.762	13.346	0.925(8864)	0.986(692)	0.973(16907)	non tumor-specific	exon_skip	yes
UN_PLCD3_UP_LS0002	chr17:45148160|45149703:-	PLCD3	phospholipase C delta 3	protein coding gene	no	.	1.415	0.283	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRR35_LS0012	chr16:563464|564167:+	PRR35	proline rich 35	protein coding gene	no	.	2.225	2.207	0.000	0.002(16)	0.138(97)	0(0)	non tumor-specific	nAS	no
OCRL_LS005	chrX:129548601|129553236:+	OCRL	OCRL inositol polyphosphate-5-phosphatase	protein coding gene	no	ENST00000646010.1	1.764	0.415	0.000	0.049(468)	0.019(13)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
RRN3_LS017	chr16:15086454|15091315:-	RRN3	RRN3 homolog, RNA polymerase I transcription factor	protein coding gene	no	ENST00000198767.10;ENST00000563559.5;ENST00000327307.11;ENST00000564131.1	20.194	13.739	9.916	0.953(9133)	0.987(693)	0.955(16598)	non tumor-specific	exon_skip	yes
UN_LAX1_LS0010	chr1:203771477|203773875:+	LAX1	lymphocyte transmembrane adaptor 1	protein coding gene	no	.	2.528	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
PPP2R5D_LS001	chr6:42984704|42989611:+	PPP2R5D	protein phosphatase 2 regulatory subunit B'delta	protein coding gene	no	ENST00000485511.5;ENST00000394110.7;ENST00000472118.5;ENST00000230402.10	11.352	7.676	16.433	0.953(9133)	0.976(685)	0.977(16983)	non tumor-specific	nAS	yes
UN_FSCN1_LS0146	chr7:5606467|5606499:-	FSCN1	fascin actin-bundling protein 1	protein coding gene	no	.	26.581	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
COG5_LS018	chr7:107324521|107362033:-	COG5	component of oligomeric golgi complex 5	protein coding gene	no	ENST00000347053.7;ENST00000297135.7;ENST00000393603.6	33.684	21.537	19.808	0.965(9249)	0.989(694)	0.978(16991)	non tumor-specific	nAS	yes
UN_IL9R_LS0012	chrX:156008131|156009816:+	IL9R	interleukin 9 receptor	protein coding gene	no	.	1.878	0.158	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01832_LS002	chr2:138104220|138105477:+	LINC01832	long intergenic non-protein coding RNA 1832	lncRNA gene	no	ENST00000446520.1	1.331	0.000	0.646	0.001(5)	0(0)	0.001(25)	non tumor-specific	nAS	yes
UN_TAB3_LS0047	chrX:30871801|30888679:-	TAB3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein coding gene	no	.	1.147	0.270	0.000	0.004(38)	0.01(7)	0(0)	non tumor-specific	nAS	no
GRIA1_LS023	chr5:153770415|153794621:+	GRIA1	glutamate ionotropic receptor AMPA type subunit 1	protein coding gene	no	ENST00000285900.9;ENST00000518142.5;ENST00000521843.6;ENST00000518783.1	2.609	9.667	3.301	0.074(710)	0.094(66)	0.251(4367)	non tumor-specific	exon_skip;mutex_exons	yes
UN_HSPBP1_LS0008	chr19:55262513|55262546:+	HSPBP1	HSPA (Hsp70) binding protein 1	protein coding gene	no	.	3.602	0.170	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SUGT1_LS0003	chr13:52652960|52653046:+	SUGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein coding gene	no	.	5.770	5.131	0.000	0.186(1784)	0.095(67)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PROX1-AS1_LS051	chr1:213966284|213987580:-	PROX1-AS1	PROX1 antisense RNA 1	lncRNA gene	no	ENST00000625209.2	0.814	0.056	0.961	0.052(498)	0.054(38)	0.137(2376)	non tumor-specific	nAS	yes
MAPK7_LS006	chr17:19378402|19378896:+	MAPK7	mitogen-activated protein kinase 7	protein coding gene	no	ENST00000443215.5	0.052	0.028	0.654	0.193(1848)	0.175(123)	0.042(725)	non tumor-specific	alt_5prime	yes
CORIN_LS018	chr4:47680251|47683731:-	CORIN	corin, serine peptidase	protein coding gene	no	ENST00000273857.8;ENST00000508498.5;ENST00000502252.5	4.012	2.365	1.643	0.179(1713)	0.281(197)	0.453(7878)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SLC9A1_LS0013	chr1:27099193|27099401:+	SLC9A1	solute carrier family 9 member A1	protein coding gene	no	.	2.663	0.337	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
SUZ12_LS012	chr17:31976614|31982999:+	SUZ12	SUZ12 polycomb repressive complex 2 subunit	protein coding gene	yes	ENST00000322652.9;ENST00000580398.1	33.758	19.490	10.266	0.945(9053)	0.979(687)	0.968(16832)	non tumor-specific	exon_skip	yes
GRK7_LS001	chr3:141778896|141780374:+	GRK7	G protein-coupled receptor kinase 7	protein coding gene	no	ENST00000264952.2	1.024	0.009	0.699	0.014(137)	0.001(1)	0.13(2265)	non tumor-specific	nAS	yes
UN_APOE_LS0046	chr19:44908581|44908672:-	APOE	apolipoprotein E	protein coding gene	no	.	30.082	0.177	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
NOLC1_LS015	chr10:102159308|102159433:+	NOLC1	nucleolar and coiled-body phosphoprotein 1	protein coding gene	no	ENST00000605788.5;ENST00000464969.6;ENST00000488254.6;ENST00000603946.5;ENST00000461421.5;ENST00000476468.5	84.009	42.044	33.256	0.987(9457)	0.993(697)	0.978(17003)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RNU6-353P_UP_LS0161	chr15:43598230|43696109:+	RNU6-353P	RNA, U6 small nuclear 353, pseudogene	small non-coding RNA gene	no	.	83.500	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RTKN_LS0036	chr2:74428942|74429776:-	RTKN	rhotekin	protein coding gene	no	.	8.320	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MYO10_LS0035	chr5:16741878|16754828:-	MYO10	myosin X	protein coding gene	no	.	4.322	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM178B_LS0083	chr2:96961930|96962916:+	FAM178B	family with sequence similarity 178 member B	protein coding gene	no	.	1.832	0.253	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
NUDT17_LS007	chr1:145847348|145847583:+	NUDT17	nudix hydrolase 17	protein coding gene	no	ENST00000334513.5;ENST00000477878.5;ENST00000460879.5;ENST00000498192.5;ENST00000444015.2	5.091	2.380	4.796	0.903(8653)	0.897(630)	0.963(16744)	non tumor-specific	nAS	yes
UN_LINC01106_LS0005	chr2:110375275|110375636:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	1.264	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC245060.5_UP_LS0084	chr22:22353143|22357989:-	AC245060.5	-	lncRNA gene	no	.	2.994	0.446	0.000	0.011(106)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC016831.6_LS0030	chr7:130966238|130967389:-	AC016831.6	-	lncRNA gene	no	.	0.738	0.076	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRAP_LS007	chr17:19030443|19035958:-	GRAP	GRB2 related adaptor protein	protein coding gene	no	ENST00000583020.1	0.589	2.192	0.709	0.064(614)	0.144(101)	0.086(1492)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF280D_LS026	chr15:56701072|56701173:-	ZNF280D	zinc finger protein 280D	protein coding gene	no	ENST00000559237.5;ENST00000267807.11;ENST00000560002.5;ENST00000558002.5;ENST00000558320.5	8.193	7.045	18.863	0.976(9350)	0.99(695)	0.975(16951)	non tumor-specific	exon_skip	yes
UN_KLRF1_UP_LS0014	chr12:9769272|9770991:+	KLRF1	killer cell lectin like receptor F1	protein coding gene	no	.	1.771	0.267	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
TPP2_LS016	chr13:102630195|102633950:+	TPP2	tripeptidyl peptidase 2	protein coding gene	no	ENST00000376065.8;ENST00000376052.4	23.749	13.389	14.340	0.938(8985)	0.98(688)	0.971(16880)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GADD45A_UP_LS0023	chr1:67619665|67626639:+	GADD45A	growth arrest and DNA damage inducible alpha	protein coding gene	yes	.	3.104	1.208	0.000	0.005(49)	0.03(21)	0(0)	non tumor-specific	nAS	no
UN_UBC_LS1014	chr12:124913508|124913574:+	UBC	ubiquitin C	protein coding gene	no	.	22.848	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC138409.2_LS0013	chr5:34218450|34244616:-	AC138409.2	-	pseudogene	no	.	1.153	0.068	0.000	0.049(469)	0.03(21)	0(0)	non tumor-specific	nAS	no
PDCD2_LS010	chr6:170583188|170583505:-	PDCD2	programmed cell death 2	protein coding gene	no	ENST00000541970.5;ENST00000167218.9;ENST00000392090.6;ENST00000545869.5;ENST00000542896.5;ENST00000544866.5;ENST00000539212.5;ENST00000538195.1;ENST00000453163.6;ENST00000537445.5;ENST00000544336.5;ENST00000614056.4;ENST00000443345.2;ENST00000544755.1	87.530	48.550	55.236	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SLC41A3_LS016	chr3:126033678|126067947:-	SLC41A3	solute carrier family 41 member 3	protein coding gene	no	ENST00000346785.9;ENST00000514023.5;ENST00000514333.5	0.504	0.358	4.500	0.941(9013)	0.963(676)	0.94(16335)	non tumor-specific	exon_skip	yes
UN_S100A13_LS0014	chr1:153623082|153625304:-	S100A13	S100 calcium binding protein A13	protein coding gene	no	.	1.832	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AL365226.2_UP_LS0007	chr6:70394272|70394685:+	AL365226.2	-	lncRNA gene	no	.	10.461	0.565	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
CD6_LS017	chr11:61013563|61013919:+	CD6	CD6 molecule	protein coding gene	no	ENST00000313421.11;ENST00000545105.5;ENST00000344931.9;ENST00000452451.6;ENST00000538611.1	3.050	2.108	1.760	0.697(6679)	0.721(506)	0.608(10572)	non tumor-specific	exon_skip	yes
IFIT1B_LS001	chr10:89378140|89383319:+	IFIT1B	interferon induced protein with tetratricopeptide repeats 1B	protein coding gene	no	ENST00000371809.3	0.376	0.073	1.551	0.034(328)	0.031(22)	0.104(1814)	non tumor-specific	nAS	yes
AREL1_LS049	chr14:74701774|74712933:-	AREL1	apoptosis resistant E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000556860.1	0.109	0.033	0.709	0.151(1447)	0.245(172)	0.179(3104)	non tumor-specific	nAS	yes
ERP44_LS010	chr9:99982713|99984967:-	ERP44	endoplasmic reticulum protein 44	protein coding gene	no	ENST00000262455.6	28.694	25.893	117.424	0.929(8905)	0.927(651)	0.979(17021)	non tumor-specific	nAS	yes
UN_LDLRAD1_LS0007	chr1:54017427|54018007:-	LDLRAD1	low density lipoprotein receptor class A domain containing 1	protein coding gene	no	.	0.730	2.664	0.000	0.004(37)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FAM110D_LS0002	chr1:26160605|26161212:+	FAM110D	family with sequence similarity 110 member D	protein coding gene	no	.	2.575	1.906	0.000	0.04(388)	0.259(182)	0(0)	non tumor-specific	nAS	no
SCAP_LS003	chr3:47414652|47414827:-	SCAP	SREBF chaperone	protein coding gene	no	ENST00000428413.5;ENST00000320017.10;ENST00000441517.6;ENST00000265565.9;ENST00000545718.2;ENST00000648151.1	186.752	131.828	97.458	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MEGF8_LS019	chr19:42351761|42352208:+	MEGF8	multiple EGF like domains 8	protein coding gene	no	ENST00000334370.8;ENST00000378073.5;ENST00000251268.10	10.327	8.815	6.621	0.817(7830)	0.913(641)	0.942(16382)	non tumor-specific	alt_3prime	yes
UN_AKAP13_LS0004	chr15:85381930|85485710:+	AKAP13	A-kinase anchoring protein 13	protein coding gene	yes	.	0.595	0.075	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZFYVE21_LS009	chr14:103728983|103729091:+	ZFYVE21	zinc finger FYVE-type containing 21	protein coding gene	no	ENST00000216602.10;ENST00000311141.6;ENST00000554630.5;ENST00000556610.5;ENST00000555501.1;ENST00000555163.2;ENST00000556795.1	107.718	91.706	117.542	0.996(9539)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_AGO4_LS0011	chr1:35825678|35825926:+	AGO4	argonaute RISC component 4	protein coding gene	no	.	2.880	0.573	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_5prime;mutex_exons	no
CTTNBP2_LS026	chr7:117784454|117791128:-	CTTNBP2	cortactin binding protein 2	protein coding gene	no	ENST00000160373.7	4.449	2.616	1.902	0.372(3563)	0.578(406)	0.684(11882)	non tumor-specific	alt_5prime	yes
LINC00937_LS002	chr12:8308732|8316356:-	LINC00937	long intergenic non-protein coding RNA 937	lncRNA gene	no	ENST00000544461.1	0.224	0.256	0.790	0.039(378)	0.027(19)	0.179(3107)	non tumor-specific	nAS	yes
UN_AC107884.1_LS0010	chr11:7508183|7512123:-	AC107884.1	-	lncRNA gene	no	.	2.332	0.773	0.000	0.052(496)	0.066(46)	0(0)	non tumor-specific	nAS	no
LAT_LS010	chr16:28985888|28986385:+	LAT	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000563964.5;ENST00000563964.5;ENST00000563964.5	0.026	0.022	0.766	0.138(1319)	0.093(65)	0.04(696)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HEATR3_LS004	chr16:50066269|50068780:+	HEATR3	HEAT repeat containing 3	protein coding gene	no	ENST00000561819.1;ENST00000561819.1	1.396	0.777	0.857	0.124(1189)	0.11(77)	0.385(6688)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SARM1_LS0086	chr17:28399713|28402238:-	SARM1	sterile alpha and TIR motif containing 1	protein coding gene	no	.	2.554	0.272	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_LINC00240_LS0032	chr6:27020767|27022434:+	LINC00240	long intergenic non-protein coding RNA 240	lncRNA gene	no	.	2.040	0.151	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WBP1L_LS0010	chr10:102779900|102797993:+	WBP1L	WW domain binding protein 1 like	protein coding gene	no	.	2.921	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
ZNF7_LS002	chr8:144827609|144828729:+	ZNF7	zinc finger protein 7	protein coding gene	no	ENST00000532051.5	0.044	0.002	0.613	0.015(145)	0.004(3)	0.015(269)	non tumor-specific	exon_skip;mutex_exons	yes
SLC39A8_LS001	chr4:102253430|102259455:-	SLC39A8	solute carrier family 39 member 8	protein coding gene	no	ENST00000424970.6	1.682	2.651	1.131	0.175(1681)	0.301(211)	0.419(7288)	non tumor-specific	alt_3prime;intron_retention	yes
UN_KLHDC4_LS0013	chr16:87700680|87700830:+	KLHDC4	kelch domain containing 4	protein coding gene	no	.	1.335	0.313	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
NIPAL2_LS022	chr8:98236214|98251608:-	NIPAL2	NIPA like domain containing 2	protein coding gene	no	ENST00000520545.5	0.554	0.006	0.583	0.005(48)	0.007(5)	0.003(45)	non tumor-specific	nAS	yes
UN_TRAF7_LS0086	chr16:2177178|2177646:-	TRAF7	TNF receptor associated factor 7	protein coding gene	no	.	1.645	0.218	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MOXD1_UP_LS0002	chr6:132402079|132402648:-	MOXD1	monooxygenase DBH like 1	protein coding gene	no	.	0.851	0.228	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_DGAT2_LS0023	chr11:75790731|75796315:+	DGAT2	diacylglycerol O-acyltransferase 2	protein coding gene	no	.	9.733	15.901	0.000	0.003(27)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
TMPRSS15_LS012	chr21:18332173|18341413:-	TMPRSS15	transmembrane serine protease 15	protein coding gene	no	ENST00000284885.7	9.408	8.938	2.228	0.022(208)	0.024(17)	0.01(169)	non tumor-specific	exon_skip	yes
HERC1_LS062	chr15:63694894|63696124:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6	5.348	4.801	5.440	0.661(6336)	0.856(601)	0.923(16051)	non tumor-specific	nAS	yes
FAM20C_LS012	chr7:208976|246415:+	FAM20C	FAM20C golgi associated secretory pathway kinase	protein coding gene	no	ENST00000313766.5	81.734	61.208	59.166	0.984(9427)	0.997(700)	0.973(16913)	non tumor-specific	nAS	yes
SMARCD2_LS005	chr17:63833722|63833909:-	SMARCD2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein coding gene	no	ENST00000613943.4;ENST00000448276.6;ENST00000323347.14;ENST00000225742.13;ENST00000450364.3;ENST00000584483.5	233.788	114.884	123.373	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
TBC1D10B_LS009	chr16:30358817|30369228:-	TBC1D10B	TBC1 domain family member 10B	protein coding gene	no	.;.	2.869	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RAP2A_UP_LS0002	chr13:97122976|97275632:+	RAP2A	RAP2A, member of RAS oncogene family	protein coding gene	no	.	2.987	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZSWIM6_LS0029	chr5:61473037|61494260:+	ZSWIM6	zinc finger SWIM-type containing 6	protein coding gene	no	.	2.947	0.344	0.000	0.014(136)	0.009(6)	0(0)	non tumor-specific	nAS	no
PARP6_LS044	chr15:72266822|72267475:-	PARP6	poly(ADP-ribose) polymerase family member 6	protein coding gene	no	ENST00000569795.5;ENST00000616176.4;ENST00000260376.11;ENST00000287196.13;ENST00000565443.5;ENST00000567440.5;ENST00000419739.7;ENST00000568360.5;ENST00000566844.1	6.818	5.093	48.271	0.968(9279)	0.991(696)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_ATP2A3_LS0046	chr17:3941654|3942539:-	ATP2A3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein coding gene	no	.	2.585	1.336	0.000	0.008(73)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NCF4_LS0007	chr22:36863225|36863333:+	NCF4	neutrophil cytosolic factor 4	protein coding gene	no	.	2.430	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_S1PR4_LS0009	chr19:3176577|3179214:+	S1PR4	sphingosine-1-phosphate receptor 4	protein coding gene	no	.	1.340	0.141	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
TPTE2P6_LS004	chr13:24586794|24587226:+	TPTE2P6	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6	pseudogene	no	ENST00000440905.5	0.618	0.113	1.037	0.138(1319)	0.095(67)	0.415(7207)	non tumor-specific	nAS	yes
UN_ZMYM3_UP_LS0003	chrX:71261604|71300564:-	ZMYM3	zinc finger MYM-type containing 3	protein coding gene	no	.	9.300	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RTN1_LS004	chr14:59603921|59605368:-	RTN1	reticulon 1	protein coding gene	no	ENST00000395090.5;ENST00000342503.8;ENST00000267484.9;ENST00000432103.6;ENST00000474911.5;ENST00000611068.1;ENST00000490111.1	61.818	134.890	13.683	0.893(8553)	0.944(663)	0.95(16514)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AC010834.3_LS001	chr8:93720113|93720769:+	AC010834.3	-	lncRNA gene	no	ENST00000520562.1	0.307	0.146	0.650	0.113(1085)	0.094(66)	0.039(672)	non tumor-specific	nAS	yes
C1QTNF12_LS002	chr1:1242913|1243062:-	C1QTNF12	C1q and TNF related 12	protein coding gene	no	ENST00000462849.1;ENST00000330388.2	3.076	2.020	2.325	0.775(7422)	0.684(480)	0.852(14804)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PGGHG_LS0012	chr11:290122|290390:+	PGGHG	protein-glucosylgalactosylhydroxylysine glucosidase	protein coding gene	no	.	13.075	1.027	0.000	0.009(91)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_LINC01883_UP_LS0006	chr2:38403401|38409093:+	LINC01883	long intergenic non-protein coding RNA 1883	lncRNA gene	no	.	2.511	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012574.1_UP_LS0004	chr8:23591485|23665505:+	AC012574.1	-	lncRNA gene	no	.	1.470	0.713	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01605_LS0003	chr8:37421569|37475612:-	LINC01605	long intergenic non-protein coding RNA 1605	lncRNA gene	no	.	2.755	0.276	0.000	0.02(190)	0.007(5)	0(0)	non tumor-specific	nAS	no
C14orf93_LS042	chr14:23001037|23002709:-	C14orf93	chromosome 14 open reading frame 93	protein coding gene	no	ENST00000397380.6	0.023	0.014	0.653	0.134(1280)	0.165(116)	0.045(786)	non tumor-specific	nAS	yes
LRRC61_LS003	chr7:150323560|150325841:+	LRRC61	leucine rich repeat containing 61	protein coding gene	no	ENST00000463441.5;ENST00000359623.8	13.629	7.104	8.965	0.84(8049)	0.91(639)	0.954(16578)	non tumor-specific	exon_skip	yes
UN_SND1_LS0022	chr7:127904819|127929161:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	.	72.544	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_C11orf65_LS0022	chr11:108335109|108335884:+	C11orf65	chromosome 11 open reading frame 65	protein coding gene	no	.	5.709	2.364	0.000	0.003(24)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
RAB34_LS001	chr17:28714631|28715063:-	RAB34	RAB34, member RAS oncogene family	protein coding gene	no	ENST00000453384.7;ENST00000625712.2	0.105	0.080	1.924	0.657(6299)	0.627(440)	0.729(12667)	non tumor-specific	intron_retention	yes
UN_JSRP1_LS0003	chr19:2253003|2253599:-	JSRP1	junctional sarcoplasmic reticulum protein 1	protein coding gene	no	.	2.052	0.039	0.000	0.008(80)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_COL1A1_LS0471	chr17:50186691|50186743:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	71.035	1.995	0.000	0.008(73)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZHX2_LS0057	chr8:122898453|122911790:-	ZHX2	zinc fingers and homeoboxes 2	protein coding gene	yes	.	1.808	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCAT14_LS0014	chr22:23544306|23546493:+	PCAT14	prostate cancer associated transcript 14	lncRNA gene	no	.	27.276	1.009	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
ELMOD3_LS019	chr2:85355784|85356967:+	ELMOD3	ELMO domain containing 3	protein coding gene	no	ENST00000409890.6	0.031	0.012	0.620	0.211(2025)	0.202(142)	0.014(238)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RASL11A_LS0001	chr13:27271178|27271484:+	RASL11A	RAS like family 11 member A	protein coding gene	yes	.	1.953	0.103	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_AC078923.1_UP_LS0004	chr12:76003422|76006189:-	AC078923.1	-	lncRNA gene	no	.	4.280	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
XPOT_LS015	chr12:64424723|64425038:+	XPOT	exportin for tRNA	protein coding gene	no	ENST00000332707.9;ENST00000542958.5;ENST00000538086.5	67.987	28.581	42.758	0.982(9405)	0.993(697)	0.979(17017)	non tumor-specific	nAS	yes
USP2_LS016	chr11:119373521|119376224:-	USP2	ubiquitin specific peptidase 2	protein coding gene	no	ENST00000531070.1	0.694	0.415	1.199	0.302(2896)	0.473(332)	0.305(5296)	non tumor-specific	nAS	yes
WDR20_LS023	chr14:102195120|102195874:+	WDR20	WD repeat domain 20	protein coding gene	no	ENST00000557186.5	0.550	0.000	0.610	0.001(10)	0.001(1)	0.013(230)	non tumor-specific	exon_skip;intron_retention	yes
UN_KIAA2026_LS0032	chr9:5931684|5954016:-	KIAA2026	KIAA2026	protein coding gene	no	.	2.809	0.095	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TGM5_LS002	chr15:43233687|43234769:-	TGM5	transglutaminase 5	protein coding gene	no	ENST00000610827.4;ENST00000611276.4;ENST00000220420.9;ENST00000622115.1;ENST00000349114.8;ENST00000396996.3	4.842	5.081	1.744	0.205(1960)	0.199(140)	0.381(6618)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LRP5_UP_LS0002	chr11:68272176|68274361:+	LRP5	LDL receptor related protein 5	protein coding gene	no	.	2.322	0.761	0.000	0.114(1096)	0.15(105)	0(0)	non tumor-specific	nAS	no
UN_EEF1AKMT2_LS0040	chr10:124789157|124791724:-	EEF1AKMT2	EEF1A lysine methyltransferase 2	protein coding gene	no	.	0.485	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RELT_UP_LS0001	chr11:73297770|73346883:+	RELT	RELT TNF receptor	protein coding gene	no	.	3.202	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE2L6_LS0005	chr11:57551753|57552305:+	UBE2L6	ubiquitin conjugating enzyme E2 L6	protein coding gene	no	.	1.752	0.269	0.000	0.008(81)	0.001(1)	0(0)	non tumor-specific	nAS	no
TBC1D5_LS030	chr3:17508605|17524585:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	ENST00000414349.5	0.129	0.000	0.545	0.001(7)	0(0)	0.003(58)	non tumor-specific	mutex_exons	yes
UN_AC020604.1_UP_LS0001	chr2:46625524|46629970:+	AC020604.1	-	lncRNA gene	no	.	2.410	0.414	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GOLGA8Q_LS0003	chr15:30561134|30561714:+	GOLGA8Q	golgin A8 family member Q	protein coding gene	no	.	4.218	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_POGLUT1_LS0009	chr3:119478474|119479503:+	POGLUT1	protein O-glucosyltransferase 1	protein coding gene	no	.	1.316	0.097	0.000	0.007(67)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
QSOX1_LS013	chr1:180194392|180196262:+	QSOX1	quiescin sulfhydryl oxidase 1	protein coding gene	no	ENST00000367602.7;ENST00000367600.5	90.239	64.713	114.524	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AR_LS0024	chrX:67729873|67730018:-	AR	androgen receptor	protein coding gene	yes	.	6.948	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CIT_LS034	chr12:119735357|119742411:-	CIT	citron rho-interacting serine/threonine kinase	protein coding gene	no	ENST00000392521.6;ENST00000261833.11;ENST00000545913.5;ENST00000392520.2;ENST00000537607.5;ENST00000546026.1;ENST00000541841.1	5.895	3.143	2.746	0.819(7848)	0.642(451)	0.672(11675)	non tumor-specific	exon_skip	yes
UN_CX3CL1_UP_LS0001	chr16:57342535|57358787:+	CX3CL1	C-X3-C motif chemokine ligand 1	protein coding gene	no	.	1.378	0.247	0.000	0.004(35)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_FAM110B_LS0001	chr8:57994806|58075535:+	FAM110B	family with sequence similarity 110 member B	protein coding gene	no	.	1.547	0.144	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_GNAS_LS0177	chr20:58910805|58910939:-	GNAS	GNAS complex locus	protein coding gene	yes	.	139.063	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
TCN1_LS011	chr11:59862722|59863907:-	TCN1	transcobalamin 1	protein coding gene	no	ENST00000257264.3;ENST00000532419.5	19.539	13.612	2.073	0.371(3557)	0.318(223)	0.31(5394)	non tumor-specific	exon_skip	yes
UN_KANK1_LS0136	chr9:683706|710804:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	2.337	1.073	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM193B_LS025	chr5:177532641|177536358:-	FAM193B	family with sequence similarity 193 member B	protein coding gene	no	ENST00000514747.5;ENST00000510479.5;ENST00000506955.5;ENST00000510163.5	15.318	8.010	62.740	0.979(9381)	0.984(691)	0.979(17020)	non tumor-specific	exon_skip	yes
ATP13A2_LS007	chr1:16988474|16989691:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000466561.1;ENST00000502418.1	88.205	51.432	35.694	0.996(9538)	0.993(697)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
APOA1_LS008	chr11:116837407|116837528:-	APOA1	apolipoprotein A1	protein coding gene	no	ENST00000375320.5;ENST00000375320.5	1.797	27.097	0.943	0.13(1247)	0.191(134)	0.073(1274)	non tumor-specific	alt_3prime;alt_5prime	yes
AL589666.1_LS008	chr6:85612920|85614981:-	AL589666.1	-	protein coding gene	no	ENST00000503906.1	6.463	3.242	5.907	0.709(6791)	0.709(498)	0.963(16746)	non tumor-specific	nAS	yes
UN_PLEC_LS0033	chr8:143915349|143915613:+	PLEC	plectin	protein coding gene	no	.	3.001	0.166	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC02105_LS008	chr5:53816192|53819556:-	LINC02105	long intergenic non-protein coding RNA 2105	lncRNA gene	no	ENST00000511953.1	0.999	0.000	0.564	0.002(15)	0(0)	0.002(34)	non tumor-specific	nAS	yes
UN_MYL6B_LS0063	chr12:56155198|56158387:+	MYL6B	myosin light chain 6B	protein coding gene	no	.	21.602	3.140	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
NAALADL1_LS038	chr11:65058250|65058337:-	NAALADL1	N-acetylated alpha-linked acidic dipeptidase like 1	protein coding gene	no	ENST00000358658.7;ENST00000340252.8;ENST00000355721.7;ENST00000356632.7	0.915	2.255	2.479	0.054(514)	0.077(54)	0.035(604)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC131212.1_LS0002	chr12:132593173|132593341:-	AC131212.1	-	lncRNA gene	no	.	4.335	0.210	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
CHD3_LS010	chr17:7893935|7894127:+	CHD3	chromodomain helicase DNA binding protein 3	protein coding gene	no	ENST00000452447.1;ENST00000572579.1	8.315	10.375	16.210	0.935(8955)	0.929(652)	0.97(16863)	non tumor-specific	alt_3prime	yes
UN_ACTG1_LS0299	chr17:81511432|81511613:+	ACTG1	actin gamma 1	protein coding gene	no	.	31.260	0.083	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHMP5_LS0003	chr9:33265169|33266010:+	CHMP5	charged multivesicular body protein 5	protein coding gene	no	.	15.815	3.761	0.000	0.007(68)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
PRRT4_LS005	chr7:128358800|128359149:-	PRRT4	proline rich transmembrane protein 4	protein coding gene	no	ENST00000489835.6;ENST00000446477.6;ENST00000480290.5;ENST00000535159.5;ENST00000489517.1	5.653	2.074	2.596	0.291(2786)	0.308(216)	0.709(12319)	non tumor-specific	exon_skip	yes
ELMO2_LS003	chr20:46370513|46371352:-	ELMO2	engulfment and cell motility 2	protein coding gene	no	ENST00000452857.5;ENST00000464448.1	5.915	2.479	0.680	0.099(945)	0.077(54)	0.093(1620)	non tumor-specific	alt_3prime	yes
UN_AC091551.1_LS0025	chr18:50984340|50988639:-	AC091551.1	-	protein coding gene	no	.	1.869	0.071	0.000	0.022(207)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC078880.1_UP_LS0013	chr12:115145377|115160515:+	AC078880.1	-	lncRNA gene	no	.	3.787	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COL3A1_LS0065	chr2:188995067|189008964:-	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	.	2.137	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC65_LS004	chr12:48905113|48918275:+	CCDC65	coiled-coil domain containing 65	protein coding gene	no	ENST00000552942.5	0.129	0.084	0.839	0.051(489)	0.058(41)	0.025(440)	non tumor-specific	exon_skip	yes
UN_GBA_LS0015	chr1:155236082|155236245:-	GBA	glucosylceramidase beta	protein coding gene	no	.	11.964	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_WASF2_LS0007	chr1:27404792|27404820:+	WASF2	WASP family member 2	protein coding gene	no	.	6.062	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
RNF6_LS010	chr13:26221330|26221835:-	RNF6	ring finger protein 6	protein coding gene	no	ENST00000474280.1	0.514	0.325	1.414	0.66(6322)	0.774(543)	0.672(11682)	non tumor-specific	alt_5prime	yes
UN_AP3D1_LS0015	chr19:2101359|2101850:+	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	.	2.046	0.157	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC38A4_LS023	chr12:46793183|46825903:-	SLC38A4	solute carrier family 38 member 4	protein coding gene	no	ENST00000447411.5;ENST00000447411.5	1.634	2.003	1.029	0.121(1161)	0.335(235)	0.146(2544)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NPIPA1_LS0033	chr16:14932958|14933066:+	NPIPA1	nuclear pore complex interacting protein family member A1	protein coding gene	no	.	5.254	0.879	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_GRIN2D_LS0021	chr19:48421940|48441769:+	GRIN2D	glutamate ionotropic receptor NMDA type subunit 2D	protein coding gene	no	.	3.198	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
DOCK2_LS046	chr5:170008746|170018960:+	DOCK2	dedicator of cytokinesis 2	protein coding gene	no	ENST00000256935.12;ENST00000520908.6;ENST00000524185.5;ENST00000523351.6	11.625	4.879	4.083	0.736(7056)	0.799(561)	0.862(14989)	non tumor-specific	exon_skip	yes
WNK2_LS032	chr9:93298067|93300051:+	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	ENST00000479696.1	0.175	0.124	0.813	0.329(3155)	0.242(170)	0.119(2069)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NBPF1_LS019	chr1:16582758|16583594:-	NBPF1	NBPF member 1	protein coding gene	no	ENST00000430580.6;ENST00000432949.5	6.887	6.251	0.674	0.705(6752)	0.863(606)	0.058(1003)	non tumor-specific	exon_skip	yes
UN_NCOR2_LS0295	chr12:124495368|124518157:-	NCOR2	nuclear receptor corepressor 2	protein coding gene	no	.	2.922	0.411	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
VSIG8_LS001	chr1:159855026|159855883:-	VSIG8	V-set and immunoglobulin domain containing 8	protein coding gene	no	ENST00000368100.1	2.192	1.609	1.423	0.056(533)	0.121(85)	0.288(5011)	non tumor-specific	nAS	yes
UN_C3_LS0220	chr19:6712619|6713189:-	C3	complement C3	protein coding gene	no	.	185.645	93.721	0.000	0.012(114)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_RGMA_LS0011	chr15:93043882|93043972:+	RGMA	repulsive guidance molecule BMP co-receptor a	protein coding gene	no	.	4.098	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HDAC6_LS0057	chrX:48824068|48824544:+	HDAC6	histone deacetylase 6	protein coding gene	no	.	3.951	0.617	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CCDC84_LS004	chr11:118999109|119001613:+	CCDC84	coiled-coil domain containing 84	protein coding gene	no	ENST00000526463.5	0.151	0.255	2.051	0.582(5575)	0.474(333)	0.853(14824)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CHRNA7_LS0011	chr15:32165246|32166757:-	CHRNA7	cholinergic receptor nicotinic alpha 7 subunit	protein coding gene	no	.	4.265	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TPH1_LS002	chr11:18022931|18023888:-	TPH1	tryptophan hydroxylase 1	protein coding gene	no	ENST00000250018.6;ENST00000417164.5	7.012	1.511	1.854	0.091(876)	0.172(121)	0.669(11623)	non tumor-specific	nAS	yes
TRIT1_LS002	chr1:39844218|39844531:-	TRIT1	tRNA isopentenyltransferase 1	protein coding gene	yes	ENST00000648678.1;ENST00000537440.5;ENST00000441669.6;ENST00000316891.9;ENST00000372818.5;ENST00000495175.6;ENST00000491865.5;ENST00000541099.5;ENST00000465417.5;ENST00000492612.6	40.498	20.399	32.348	0.994(9526)	0.997(700)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_PRKY_LS0010	chrY:7275065|7285028:+	PRKY	protein kinase Y-linked (pseudogene)	pseudogene	no	.	3.866	0.515	0.000	0.006(53)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PRPF40B_LS0020	chr12:49624170|49630545:+	PRPF40B	pre-mRNA processing factor 40 homolog B	protein coding gene	no	.	1.137	0.069	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NIPA1_LS0033	chr15:22813714|22814083:+	NIPA1	NIPA magnesium transporter 1	protein coding gene	no	.	1.144	0.206	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_HLA-A_LS0099	chr6:29944347|29945549:-	HLA-A	major histocompatibility complex, class I, A	protein coding gene	no	.	34.402	9.841	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	nAS	no
VIM_LS001	chr10:17228524|17229276:+	VIM	vimentin	protein coding gene	yes	ENST00000544301.6	0.390	0.551	0.684	0.353(3385)	0.412(289)	0.105(1822)	non tumor-specific	nAS	yes
UN_CCDC77_LS0027	chr12:431954|432157:+	CCDC77	coiled-coil domain containing 77	protein coding gene	no	.	3.819	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MT-RNR1_LS0028	chrM:959|1242:-	MT-RNR1	mitochondrially encoded 12S rRNA	small non-coding RNA gene	no	.	114.383	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
YBX3_LS023	chr12:10704148|10709908:-	YBX3	Y-box binding protein 3	protein coding gene	no	ENST00000228251.8;ENST00000540447.5;ENST00000546164.5;ENST00000541351.3;ENST00000544504.5;ENST00000539204.5;ENST00000228251.8;ENST00000540447.5;ENST00000546164.5;ENST00000541351.3;ENST00000544504.5;ENST00000539204.5;ENST00000228251.8;ENST00000540447.5;ENST00000546164.5;ENST00000541351.3;ENST00000544504.5;ENST00000539204.5	125.621	60.283	254.358	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_STK38_LS0037	chr6:36540207|36540601:-	STK38	serine/threonine kinase 38	protein coding gene	no	.	1.692	0.254	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
BZW2_LS022	chr7:16698186|16704547:+	BZW2	basic leucine zipper and W2 domains 2	protein coding gene	no	ENST00000415365.5;ENST00000258761.7;ENST00000433922.6;ENST00000630952.2;ENST00000437745.5;ENST00000436868.5;ENST00000405202.5;ENST00000452975.6;ENST00000407633.1	154.720	62.852	71.210	0.997(9555)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_AC244517.2_LS0031	chr5:141123545|141151802:+	AC244517.2	-	lncRNA gene	no	.	3.276	0.082	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP2C1_LS007	chr3:130894337|130894731:+	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	ENST00000505072.5	2.566	1.494	0.704	0.325(3111)	0.356(250)	0.202(3510)	non tumor-specific	alt_3prime;exon_skip	yes
TBC1D17_LS016	chr19:49882892|49882973:+	TBC1D17	TBC1 domain family member 17	protein coding gene	no	ENST00000221543.9;ENST00000622860.4;ENST00000535102.6;ENST00000594996.5;ENST00000599049.6;ENST00000596243.5;ENST00000594984.1	84.876	62.643	111.880	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
POLDIP2_LS011	chr17:28353316|28353695:-	POLDIP2	DNA polymerase delta interacting protein 2	protein coding gene	no	ENST00000540200.5;ENST00000618887.2	249.320	172.885	108.038	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC063980.1_UP_LS0032	chr5:136546340|136549508:-	AC063980.1	-	lncRNA gene	no	.	3.641	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
ADAP1_LS020	chr7:935505|955277:-	ADAP1	ArfGAP with dual PH domains 1	protein coding gene	no	ENST00000477906.5	0.053	0.141	1.406	0.284(2720)	0.513(360)	0.126(2186)	non tumor-specific	alt_5prime	yes
AC022196.1_LS002	chr15:39513851|39514075:-	AC022196.1	-	lncRNA gene	no	ENST00000559570.1	1.629	0.103	0.678	0.004(36)	0.001(1)	0.006(101)	non tumor-specific	nAS	yes
UN_SLC25A33_LS0014	chr1:9553805|9566227:+	SLC25A33	solute carrier family 25 member 33	protein coding gene	no	.	1.923	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CAPN8_LS0018	chr1:223609364|223615970:-	CAPN8	calpain 8	protein coding gene	no	.	2.115	0.512	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
PDXK_LS008	chr21:43733706|43734069:+	PDXK	pyridoxal kinase	protein coding gene	no	ENST00000481512.5	0.091	0.052	0.956	0.639(6119)	0.608(427)	0.261(4539)	non tumor-specific	alt_5prime;intron_retention	yes
UN_EXOC4_LS0002	chr7:133253704|133274982:+	EXOC4	exocyst complex component 4	protein coding gene	no	.	4.176	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RPL26P19_LS0003	chr5:56504856|56504905:-	RPL26P19	ribosomal protein L26 pseudogene 19	pseudogene	no	.	31.187	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
KLHL7_LS001	chr7:23106146|23117834:+	KLHL7	kelch like family member 7	protein coding gene	no	ENST00000521082.5;ENST00000491352.5	1.164	1.561	2.248	0.842(8063)	0.885(621)	0.848(14741)	non tumor-specific	exon_skip	yes
MAP3K3_LS015	chr17:63672914|63681766:+	MAP3K3	mitogen-activated protein kinase kinase kinase 3	protein coding gene	no	ENST00000585302.1	0.367	0.041	0.721	0.008(81)	0.009(6)	0.219(3809)	non tumor-specific	exon_skip;mutex_exons	yes
AC138749.1_LS004	chr15:28556859|28556955:+	AC138749.1	-	pseudogene	no	ENST00000567652.1	0.664	0.067	0.911	0.011(110)	0.001(1)	0(2)	non tumor-specific	nAS	yes
UN_ARHGAP32_UP_LS0003	chr11:129286804|129294718:-	ARHGAP32	Rho GTPase activating protein 32	protein coding gene	no	.	3.150	0.997	0.000	0.007(71)	0.013(9)	0(0)	non tumor-specific	nAS	no
MECOM_LS039	chr3:169145058|169146226:-	MECOM	MDS1 and EVI1 complex locus	protein coding gene	yes	ENST00000264674.7;ENST00000433243.6	0.029	0.001	0.672	0.018(169)	0.051(36)	0.016(280)	non tumor-specific	exon_skip;intron_retention	yes
PIGN_LS028	chr18:62107085|62109834:-	PIGN	phosphatidylinositol glycan anchor biosynthesis class N	protein coding gene	no	ENST00000639600.1;ENST00000640252.1;ENST00000639912.1;ENST00000640876.1;ENST00000357637.10;ENST00000640145.1;ENST00000638977.1;ENST00000640170.1;ENST00000640540.1;ENST00000639342.1;ENST00000638435.1;ENST00000639681.1;ENST00000400334.7;ENST00000639902.1;ENST00000639758.1;ENST00000638936.1;ENST00000638858.1;ENST00000638369.1;ENST00000640268.1;ENST00000640682.1;ENST00000638904.1;ENST00000638424.1;ENST00000640050.1;ENST00000638183.1;ENST00000639174.1;ENST00000590948.5;ENST00000639214.1;ENST00000639600.1;ENST00000640252.1;ENST00000639912.1;ENST00000640876.1;ENST00000357637.10;ENST00000640145.1;ENST00000638977.1;ENST00000640170.1;ENST00000640540.1;ENST00000639342.1;ENST00000638435.1;ENST00000639681.1;ENST00000400334.7;ENST00000639902.1;ENST00000639758.1;ENST00000638936.1;ENST00000638858.1;ENST00000638369.1;ENST00000640268.1;ENST00000640682.1;ENST00000638904.1;ENST00000638424.1;ENST00000640050.1;ENST00000638183.1;ENST00000639174.1;ENST00000590948.5;ENST00000639214.1	10.372	8.696	7.571	0.925(8859)	0.969(680)	0.963(16742)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL391427.1_UP_LS0022	chr10:4956148|4965914:+	AL391427.1	-	lncRNA gene	no	.	13.441	0.268	0.000	0.007(65)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
C21orf58_LS003	chr21:46300725|46302485:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.;.;.	0.286	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FAM228A_LS009	chr2:24190553|24200580:+	FAM228A	family with sequence similarity 228 member A	protein coding gene	no	ENST00000415196.1	0.617	0.187	0.814	0.042(401)	0.087(61)	0.185(3219)	non tumor-specific	nAS	yes
UN_AL683807.1_UP_LS0013	chrX:1662052|1726067:+	AL683807.1	-	lncRNA gene	no	.	3.012	0.195	0.000	0.022(211)	0.013(9)	0(0)	non tumor-specific	nAS	no
AC004554.2_LS001	chrX:11669190|11719622:-	AC004554.2	-	lncRNA gene	no	ENST00000634846.1	1.244	0.000	0.716	0(3)	0(0)	0.008(145)	non tumor-specific	nAS	yes
MTOR_LS057	chr1:11256192|11256933:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	11.576	8.986	7.109	0.849(8130)	0.934(656)	0.949(16495)	non tumor-specific	alt_3prime;exon_skip	yes
SDK1_LS032	chr7:4158551|4161786:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	ENST00000404826.6;ENST00000389531.7;ENST00000615806.4;ENST00000476701.5	9.376	4.067	3.851	0.647(6200)	0.764(536)	0.812(14107)	non tumor-specific	exon_skip	yes
AC020637.1_LS005	chr12:58801288|58802826:+	AC020637.1	-	lncRNA gene	no	ENST00000546977.5;ENST00000548969.5;ENST00000552519.2	32.125	0.012	0.676	0.002(16)	0.001(1)	0.034(583)	non tumor-specific	exon_skip	yes
SMIM29_LS006	chr6:34247149|34247681:-	SMIM29	small integral membrane protein 29	protein coding gene	no	ENST00000413013.6;ENST00000637920.1;ENST00000413013.6;ENST00000637920.1;ENST00000413013.6;ENST00000637920.1	1.089	1.019	2.551	0.978(9368)	0.986(692)	0.899(15631)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PRIM1_LS0006	chr12:56740128|56741435:-	PRIM1	DNA primase subunit 1	protein coding gene	no	.	2.928	0.116	0.000	0.017(160)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
ERICH6_LS007	chr3:150680930|150682218:-	ERICH6	glutamate rich 6	protein coding gene	no	ENST00000491716.1;ENST00000295910.10;ENST00000491361.5	1.583	0.000	0.710	0.003(32)	0(0)	0.067(1161)	non tumor-specific	exon_skip	yes
UN_CACNA1D_LS0081	chr3:53810355|53812943:-	CACNA1D	calcium voltage-gated channel subunit alpha1 D	protein coding gene	no	.	1.017	0.404	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_XYLB_LS0031	chr3:38394959|38404906:-	XYLB	xylulokinase	protein coding gene	no	.	1.808	0.292	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHST3_LS0013	chr10:71984663|72005736:+	CHST3	carbohydrate sulfotransferase 3	protein coding gene	no	.	0.926	0.056	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC37A1_LS020	chr21:42542480|42543436:+	SLC37A1	solute carrier family 37 member 1	protein coding gene	no	ENST00000398341.7;ENST00000352133.2	26.672	19.069	7.870	0.94(9008)	0.959(673)	0.969(16847)	non tumor-specific	exon_skip	yes
UN_ARHGAP8_LS0066	chr22:44849060|44858413:+	ARHGAP8	Rho GTPase activating protein 8	protein coding gene	no	.	11.176	0.336	0.000	0.011(105)	0.001(1)	0(0)	non tumor-specific	nAS	no
GLI1_LS003	chr12:57460555|57463665:+	GLI1	GLI family zinc finger 1	protein coding gene	yes	ENST00000528432.1	0.144	0.143	0.726	0.084(802)	0.088(62)	0.055(964)	non tumor-specific	exon_skip	yes
OLFM5P_LS001	chr11:5519146|5520752:-	OLFM5P	olfactomedin family member 5, pseudogene	pseudogene	no	ENST00000411807.2	1.061	0.000	0.678	0(2)	0(0)	0.05(866)	non tumor-specific	nAS	yes
CU638689.5_LS001	chr21:6721991|6724259:+	CU638689.5	-	lncRNA gene	no	ENST00000623892.1	0.640	0.429	0.706	0.197(1885)	0.207(145)	0.185(3215)	non tumor-specific	nAS	yes
UN_ACOX3_LS0065	chr4:8436399|8438772:+	ACOX3	acyl-CoA oxidase 3, pristanoyl	protein coding gene	no	.	2.521	0.602	0.000	0.011(104)	0.023(16)	0(0)	non tumor-specific	alt_3prime	no
UN_RPL7P6_UP_LS0003	chr12:18796496|18797401:+	RPL7P6	ribosomal protein L7 pseudogene 6	pseudogene	no	.	3.791	0.085	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
SCMH1_LS008	chr1:41028726|41037362:-	SCMH1	Scm polycomb group protein homolog 1	protein coding gene	no	ENST00000397171.6;ENST00000361191.9;ENST00000361705.7;ENST00000337495.9;ENST00000372597.5;ENST00000372596.5;ENST00000456518.3;ENST00000460215.5;ENST00000397171.6;ENST00000361191.9;ENST00000361705.7;ENST00000337495.9;ENST00000372597.5;ENST00000372596.5;ENST00000456518.3;ENST00000460215.5	8.050	5.861	21.073	0.973(9323)	0.969(680)	0.974(16925)	non tumor-specific	alt_3prime;exon_skip	yes
IRX3_LS008	chr16:54284312|54285784:-	IRX3	iroquois homeobox 3	protein coding gene	no	ENST00000558054.1;ENST00000558054.1	0.538	0.296	0.659	0.462(4430)	0.57(400)	0.093(1616)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DSG2_LS0037	chr18:31546318|31546421:-	DSG2	desmoglein 2	protein coding gene	no	.	3.172	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DYSF_LS045	chr2:71610917|71611245:+	DYSF	dysferlin	protein coding gene	no	ENST00000468173.1	0.008	0.001	0.609	0.014(135)	0.03(21)	0.009(161)	non tumor-specific	nAS	yes
UN_GTF2IP5_LS0009	chr7:65778972|65780140:+	GTF2IP5	general transcription factor IIi pseudogene 5	pseudogene	no	.	1.735	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
EBAG9_LS009	chr8:109557042|109557731:+	EBAG9	estrogen receptor binding site associated antigen 9	protein coding gene	no	ENST00000529502.5;ENST00000527709.5	0.095	0.073	0.746	0.182(1746)	0.211(148)	0.208(3609)	non tumor-specific	alt_3prime;exon_skip	yes
ANK1_LS051	chr8:41715849|41716953:-	ANK1	ankyrin 1	protein coding gene	no	ENST00000347528.8;ENST00000289734.12;ENST00000265709.13	4.583	0.806	1.528	0.155(1488)	0.043(30)	0.47(8171)	non tumor-specific	nAS	yes
UN_ENOX2_LS0023	chrX:130783690|130887214:-	ENOX2	ecto-NOX disulfide-thiol exchanger 2	protein coding gene	no	.	2.391	0.379	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
NAIP_LS010	chr5:70986802|70987793:-	NAIP	NLR family apoptosis inhibitory protein	protein coding gene	no	ENST00000194097.8;ENST00000503719.6;ENST00000517649.5;ENST00000523981.5;ENST00000508426.6	1.834	1.068	0.668	0.45(4311)	0.593(416)	0.002(27)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FRMD4B_LS0064	chr3:69334466|69364214:-	FRMD4B	FERM domain containing 4B	protein coding gene	no	.	2.463	0.425	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
RBBP8NL_LS006	chr20:62415287|62415578:-	RBBP8NL	RBBP8 N-terminal like	protein coding gene	no	ENST00000252998.1	7.158	2.257	3.862	0.55(5265)	0.567(398)	0.283(4912)	non tumor-specific	nAS	yes
CLCN1_LS012	chr7:143323897|143324414:+	CLCN1	chloride voltage-gated channel 1	protein coding gene	no	ENST00000432192.5;ENST00000455478.5	0.685	0.630	1.651	0.001(5)	0.01(7)	0.041(716)	non tumor-specific	exon_skip	yes
GRM2_LS009	chr3:51715183|51716018:+	GRM2	glutamate metabotropic receptor 2	protein coding gene	no	ENST00000442933.2	0.487	0.062	0.879	0.019(182)	0.009(6)	0.051(879)	non tumor-specific	intron_retention	yes
UN_RNU6-353P_UP_LS0170	chr15:43598233|43696273:+	RNU6-353P	RNA, U6 small nuclear 353, pseudogene	small non-coding RNA gene	no	.	38.554	12.114	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HLA-S_UP_LS0014	chr6:31395444|31398059:-	HLA-S	major histocompatibility complex, class I, S (pseudogene)	pseudogene	no	.	1.748	0.588	0.000	0.033(316)	0.037(26)	0(0)	non tumor-specific	nAS	no
RPAIN_LS026	chr17:5428211|5432542:+	RPAIN	RPA interacting protein	protein coding gene	no	ENST00000571558.5;ENST00000575599.5;ENST00000381209.7;ENST00000571613.5;ENST00000539417.6;ENST00000573126.1	26.930	14.602	37.491	0.949(9092)	0.959(673)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SMAD2_LS011	chr18:47870564|47895267:-	SMAD2	SMAD family member 2	protein coding gene	yes	ENST00000586487.2	0.059	0.029	0.746	0.777(7447)	0.84(590)	0.262(4554)	non tumor-specific	exon_skip;mutex_exons	yes
PLCD1_LS005	chr3:38009158|38009272:-	PLCD1	phospholipase C delta 1	protein coding gene	yes	ENST00000461445.5;ENST00000463876.5;ENST00000334661.4;ENST00000484829.5;ENST00000495367.1	29.272	28.427	42.123	0.99(9488)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
TMEM56_LS004	chr1:95121184|95143891:+	TMEM56	TLC domain containing 4	protein coding gene	no	ENST00000456991.5	0.518	0.210	0.629	0.004(40)	0.011(8)	0.013(234)	non tumor-specific	nAS	yes
UN_AL450992.2_LS0010	chr1:151844242|151847401:+	AL450992.2	-	lncRNA gene	no	.	1.490	0.033	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC007611.1_LS002	chr16:48623603|48671900:+	AC007611.1	-	lncRNA gene	no	ENST00000564212.1	0.492	0.000	0.634	0.008(79)	0(0)	0.021(358)	non tumor-specific	nAS	yes
CCDC148_LS001	chr2:158172259|158176521:-	CCDC148	coiled-coil domain containing 148	protein coding gene	no	ENST00000283233.9;ENST00000454257.5;ENST00000409187.5;ENST00000448656.5	1.266	0.868	1.321	0.257(2464)	0.416(292)	0.464(8067)	non tumor-specific	alt_5prime	yes
SEPT4_LS028	chr17:58526313|58531480:-	SEPT4	septin 4	protein coding gene	yes	ENST00000577729.5;ENST00000577729.5	0.447	0.301	1.874	0.616(5899)	0.771(541)	0.697(12113)	non tumor-specific	alt_3prime;exon_skip	yes
NRG2_LS004	chr5:139852559|139852904:-	NRG2	neuregulin 2	protein coding gene	no	ENST00000541337.5;ENST00000289422.11;ENST00000361474.5;ENST00000340391.7;ENST00000289409.8;ENST00000358522.7;ENST00000378238.5	6.279	3.255	7.219	0.394(3772)	0.628(441)	0.892(15507)	non tumor-specific	nAS	yes
ARRDC2_LS008	chr19:18008228|18008454:+	ARRDC2	arrestin domain containing 2	protein coding gene	no	ENST00000608009.1	0.788	0.399	2.275	0.352(3377)	0.303(213)	0.806(14003)	non tumor-specific	intron_retention	yes
UN_LCA5_LS0011	chr6:79519085|79537116:-	LCA5	lebercilin LCA5	protein coding gene	no	.	1.079	0.451	0.000	0.032(309)	0.036(25)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SHROOM3_LS0030	chr4:76627870|76628866:+	SHROOM3	shroom family member 3	protein coding gene	no	.	1.070	0.158	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MUC17_LS034	chr7:101038743|101041042:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.;.	6.567	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
GARNL3_LS047	chr9:127365366|127369022:+	GARNL3	GTPase activating Rap/RanGAP domain like 3	protein coding gene	no	ENST00000478696.5	0.429	0.193	0.634	0.043(416)	0.034(24)	0.044(763)	non tumor-specific	nAS	yes
TERB2_LS008	chr15:44973955|44978489:+	TERB2	telomere repeat binding bouquet formation protein 2	protein coding gene	no	ENST00000340827.3;ENST00000559137.5	3.744	0.749	0.753	0.008(75)	0.024(17)	0.016(270)	non tumor-specific	exon_skip	yes
UN_MAP2K6_LS0030	chr17:69504579|69504778:+	MAP2K6	mitogen-activated protein kinase kinase 6	protein coding gene	no	.	1.487	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC01619_LS012	chr12:91993276|91993370:-	LINC01619	long intergenic non-protein coding RNA 1619	lncRNA gene	no	ENST00000552277.3	1.030	0.111	0.638	0.003(30)	0.003(2)	0.027(467)	non tumor-specific	intron_retention	yes
SLC20A2_LS028	chr8:42472654|42541860:-	SLC20A2	solute carrier family 20 member 2	protein coding gene	no	.;.	1.278	0.542	0.000	0.009(88)	0.014(10)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
NARS_LS008	chr18:57607665|57609357:-	NARS	asparaginyl-tRNA synthetase 1	protein coding gene	no	ENST00000256854.9;ENST00000411676.6;ENST00000540592.5;ENST00000591599.5;ENST00000588661.5;ENST00000587675.5	104.536	77.302	106.706	0.993(9515)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MMP25_LS0068	chr16:3054683|3054816:+	MMP25	matrix metallopeptidase 25	protein coding gene	no	.	3.132	0.113	0.000	0.024(232)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ESRRG_LS0001	chr1:216507183|216564219:-	ESRRG	estrogen related receptor gamma	protein coding gene	no	.	1.143	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_FAM153A_LS0006	chr5:177717684|177724338:+	FAM153A	family with sequence similarity 153 member A	protein coding gene	no	.	1.300	0.237	0.000	0.003(25)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC073107.1_LS0004	chr7:65648420|65648517:-	AC073107.1	-	pseudogene	no	.	2.944	0.751	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COP1_LS0021	chr1:176085890|176100245:-	COP1	COP1 E3 ubiquitin ligase	protein coding gene	no	.	2.469	0.714	0.000	0.033(320)	0.033(23)	0(0)	non tumor-specific	exon_skip	no
UN_KANK1_LS0108	chr9:593860|676890:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	1.699	0.532	0.000	0.005(50)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
MRPS33_LS007	chr7:141010660|141014352:-	MRPS33	mitochondrial ribosomal protein S33	protein coding gene	no	ENST00000496958.5	0.135	0.183	0.743	0.881(8437)	0.902(633)	0.266(4623)	non tumor-specific	alt_3prime;exon_skip	yes
DDX11L9_LS004	chr15:101978354|101978740:-	DDX11L9	DEAD/H-box helicase 11 like 9 (pseudogene)	pseudogene	no	ENST00000562189.1;ENST00000560040.1	0.306	0.039	0.706	0.063(599)	0.037(26)	0.006(108)	non tumor-specific	nAS	yes
UN_ATP6V0E2_LS0049	chr7:149879976|149880208:-	ATP6V0E2	ATPase H+ transporting V0 subunit e2	protein coding gene	no	.	3.497	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OTUD4_LS0022	chr4:145144434|145146263:-	OTUD4	OTU deubiquitinase 4	protein coding gene	no	.	2.603	0.345	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
BAX_LS015	chr19:48955833|48956198:+	BAX	BCL2 associated X, apoptosis regulator	protein coding gene	yes	ENST00000502487.5;ENST00000345358.11;ENST00000513545.5;ENST00000515540.5;ENST00000356483.8;ENST00000415969.6;ENST00000391871.4;ENST00000293288.12;ENST00000503726.2	234.125	78.269	110.189	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNF212B_LS0018	chr14:23232425|23234378:+	RNF212B	ring finger protein 212B	protein coding gene	no	.	3.372	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
FAM240B_LS002	chr9:38704002|38720022:-	FAM240B	family with sequence similarity 240 member B	protein coding gene	no	ENST00000637493.1	4.886	0.000	0.631	0.003(25)	0(0)	0.012(204)	non tumor-specific	nAS	yes
UN_PIGT_LS0035	chr20:45421583|45424188:+	PIGT	phosphatidylinositol glycan anchor biosynthesis class T	protein coding gene	no	.	196.412	10.744	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PIK3R4_LS007	chr3:130686422|130690490:-	PIK3R4	phosphoinositide-3-kinase regulatory subunit 4	protein coding gene	no	ENST00000356763.7;ENST00000512677.1	49.756	31.648	34.130	0.97(9293)	0.994(698)	0.979(17016)	non tumor-specific	exon_skip	yes
GTF2IRD2B_LS007	chr7:75123516|75125916:+	GTF2IRD2B	GTF2I repeat domain containing 2B	protein coding gene	no	ENST00000472837.5;ENST00000629105.2;ENST00000619142.4;ENST00000418185.6	2.672	4.073	0.762	0.87(8337)	0.963(676)	0.303(5264)	non tumor-specific	exon_skip;mutex_exons	yes
GRID2_LS022	chr4:93769450|93806715:+	GRID2	glutamate ionotropic receptor delta type subunit 2	protein coding gene	no	ENST00000637838.1	1.922	0.000	0.895	0.007(64)	0(0)	0.038(669)	non tumor-specific	nAS	yes
PRKCE_LS009	chr2:45677916|45843000:+	PRKCE	protein kinase C epsilon	protein coding gene	yes	ENST00000476675.5	0.217	0.090	0.641	0.058(556)	0.077(54)	0.022(383)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SLC1A5_LS0116	chr19:46787888|46787953:+	SLC1A5	solute carrier family 1 member 5	protein coding gene	no	.	9.386	0.761	0.000	0.008(73)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PDSS1_LS0006	chr10:26701815|26702162:+	PDSS1	decaprenyl diphosphate synthase subunit 1	protein coding gene	no	.	0.779	0.493	0.000	0.005(44)	0.009(6)	0(0)	non tumor-specific	nAS	no
AL122035.1_LS001	chr14:64422979|64448053:-	AL122035.1	-	lncRNA gene	no	ENST00000556640.1	0.217	0.193	0.697	0.274(2624)	0.34(239)	0.056(974)	non tumor-specific	nAS	yes
UN_ZNF627_LS0020	chr19:11575252|11575921:-	ZNF627	zinc finger protein 627	protein coding gene	no	.	4.358	0.193	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TMEFF1_LS007	chr9:100550160|100561397:+	TMEFF1	transmembrane protein with EGF like and two follistatin like domains 1	protein coding gene	yes	ENST00000374879.4	11.562	8.384	4.970	0.843(8080)	0.821(576)	0.885(15379)	non tumor-specific	nAS	yes
UN_PARP9_LS0005	chr3:122528743|122530755:-	PARP9	poly(ADP-ribose) polymerase family member 9	protein coding gene	no	.	4.919	3.165	0.000	0.661(6336)	0.772(542)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_WWC3_LS0050	chrX:10142243|10142280:-	WWC3	WWC family member 3	protein coding gene	no	.	2.797	0.172	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0250	chr21:8399011|8443091:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	249.945	11.497	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
DDX31_LS022	chr9:132661251|132662261:-	DDX31	DEAD-box helicase 31	protein coding gene	no	ENST00000372159.7;ENST00000372153.5;ENST00000438527.7;ENST00000310532.6;ENST00000480876.2;ENST00000482620.1	13.824	6.458	6.768	0.965(9249)	0.981(689)	0.959(16669)	non tumor-specific	alt_3prime	yes
UN_CRMP1_LS0023	chr4:5801836|5801950:+	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	0.600	0.093	0.000	0.007(71)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AL596442.1_UP_LS0066	chr6:170029850|170029929:+	AL596442.1	-	lncRNA gene	no	.	2.182	0.131	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CTSD_LS0317	chr11:1754114|1754954:+	CTSD	cathepsin D	protein coding gene	no	.	52.046	0.698	0.000	0.01(99)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02109_LS017	chr5:29211413|29216469:+	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	ENST00000623067.1	0.269	0.000	0.392	0.001(10)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_NF2_LS0035	chr22:29696930|29697681:-	NF2	neurofibromin 2	protein coding gene	yes	.	2.175	1.664	0.000	0.011(107)	0.004(3)	0(0)	non tumor-specific	nAS	no
MAST4_LS025	chr5:66959294|67054404:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000432426.5	0.404	0.261	0.725	0.1(961)	0.188(132)	0.137(2377)	non tumor-specific	exon_skip	yes
UN_ZNF589_LS0001	chr3:48241214|48260813:+	ZNF589	zinc finger protein 589	protein coding gene	no	.	1.476	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_TNFAIP8_LS0020	chr5:119346444|119348967:-	TNFAIP8	TNF alpha induced protein 8	protein coding gene	no	.	1.673	0.559	0.000	0.004(42)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_BANP_LS0002	chr16:87949761|87975048:+	BANP	BTG3 associated nuclear protein	protein coding gene	yes	.	3.328	0.609	0.000	0.03(292)	0.048(34)	0(0)	non tumor-specific	exon_skip	no
UN_WDFY3_LS0065	chr4:84894940|84896911:-	WDFY3	WD repeat and FYVE domain containing 3	protein coding gene	no	.	2.606	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PHF8_LS028	chrX:54040072|54042631:-	PHF8	PHD finger protein 8	protein coding gene	no	ENST00000462182.1	0.088	0.031	0.668	0.321(3072)	0.389(273)	0.085(1483)	non tumor-specific	nAS	yes
UN_OR9Q1_LS0017	chr11:58155663|58164336:-	OR9Q1	olfactory receptor family 9 subfamily Q member 1	protein coding gene	no	.	3.055	0.287	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_INTS8_LS0010	chr8:94832174|94841491:+	INTS8	integrator complex subunit 8	protein coding gene	yes	.	2.015	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	exon_skip	no
SVOPL_LS016	chr7:138656511|138663074:-	SVOPL	SVOP like	protein coding gene	no	ENST00000288513.9;ENST00000436657.5	0.362	0.247	0.768	0.147(1409)	0.262(184)	0.045(785)	non tumor-specific	exon_skip	yes
MEIOC_LS008	chr17:44668233|44669383:+	MEIOC	meiosis specific with coiled-coil domain	protein coding gene	no	ENST00000409122.6;ENST00000409464.1;ENST00000472403.5	1.344	0.228	0.689	0.085(813)	0.118(83)	0.019(332)	non tumor-specific	exon_skip	yes
IRF5_LS006	chr7:128938245|128942071:+	IRF5	interferon regulatory factor 5	protein coding gene	yes	ENST00000249375.8	0.285	0.272	1.060	0.386(3696)	0.365(256)	0.242(4200)	non tumor-specific	nAS	yes
AP003063.2_LS002	chr11:112548357|112553165:-	AP003063.2	-	lncRNA gene	no	ENST00000525984.2	2.318	0.000	0.904	0.006(60)	0(0)	0.04(691)	non tumor-specific	nAS	yes
UN_CEP57_LS0014	chr11:95822391|95822499:+	CEP57	centrosomal protein 57	protein coding gene	no	.	4.033	0.591	0.000	0.016(151)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC011509.2_LS0005	chr19:14279892|14291627:-	AC011509.2	-	lncRNA gene	no	.	1.734	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PIK3R4_LS024	chr3:130745264|130746318:-	PIK3R4	phosphoinositide-3-kinase regulatory subunit 4	protein coding gene	no	ENST00000356763.7	12.148	10.068	6.135	0.84(8045)	0.937(658)	0.943(16385)	non tumor-specific	alt_5prime	yes
AC109811.1_LS001	chr4:144851692|144872102:+	AC109811.1	-	lncRNA gene	no	ENST00000512833.1	0.256	0.000	0.662	0(3)	0(0)	0.001(9)	non tumor-specific	nAS	yes
UN_ATP6V1C2_LS0068	chr2:10784278|10784309:-	ATP6V1C2	ATPase H+ transporting V1 subunit C2	protein coding gene	no	.	65.361	19.336	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
CRACR2B_LS018	chr11:829183|829360:+	CRACR2B	calcium release activated channel regulator 2B	protein coding gene	no	ENST00000530737.2	1.253	0.541	2.954	0.628(6019)	0.726(510)	0.789(13706)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RFLNB_LS0009	chr17:442520|443356:-	RFLNB	refilin B	protein coding gene	no	.	4.015	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF496_LS0032	chr1:247308588|247309439:-	ZNF496	zinc finger protein 496	protein coding gene	no	.	2.834	0.794	0.000	0.06(576)	0.057(40)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_SNHG21_LS0004	chr15:82750848|82752439:+	SNHG21	small nucleolar RNA host gene 21	lncRNA gene	no	.	2.141	0.339	0.000	0.089(849)	0.027(19)	0(0)	non tumor-specific	nAS	no
AC008741.1_LS001	chr16:25238729|25239190:+	AC008741.1	-	lncRNA gene	no	ENST00000569456.1	0.005	0.007	0.649	0.124(1187)	0.165(116)	0.063(1102)	non tumor-specific	nAS	yes
ATP2A3_LS041	chr17:3951389|3951581:-	ATP2A3	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3	protein coding gene	no	ENST00000309890.11;ENST00000397041.7;ENST00000397035.7;ENST00000359983.7;ENST00000352011.7;ENST00000397043.7	28.696	28.765	9.523	0.832(7969)	0.94(660)	0.911(15842)	non tumor-specific	nAS	yes
UN_MPIG6B_LS0006	chr6:31722080|31722257:-	MPIG6B	megakaryocyte and platelet inhibitory receptor G6b	protein coding gene	no	.	0.909	0.379	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
HCFC1_LS001	chrX:153948452|153949553:-	HCFC1	host cell factor C1	protein coding gene	no	.;.	4.826	1.235	0.000	0.002(21)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CDK10_LS038	chr16:89694232|89694569:+	CDK10	cyclin dependent kinase 10	protein coding gene	no	ENST00000564192.5	0.523	0.561	1.789	0.911(8724)	0.869(610)	0.787(13685)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_NELFB_LS0023	chr9:137263180|137264250:-	NELFB	negative elongation factor complex member B	protein coding gene	no	.	3.665	0.324	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
HPSE_LS001	chr4:83295503|83300960:-	HPSE	heparanase	protein coding gene	no	ENST00000311412.9;ENST00000405413.6;ENST00000507150.5;ENST00000512196.5;ENST00000509906.5;ENST00000508891.5;ENST00000513463.1	7.245	4.535	3.411	0.794(7611)	0.821(576)	0.801(13929)	non tumor-specific	alt_3prime	yes
UN_TRIM63_UP_LS0002	chr1:26070747|26112007:-	TRIM63	tripartite motif containing 63	protein coding gene	no	.	3.849	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
SBF2_LS003	chr11:10016779|10028452:-	SBF2	SET binding factor 2	protein coding gene	no	.;.	5.094	0.139	0.000	0.03(283)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
USP48_LS027	chr1:21729829|21732762:-	USP48	ubiquitin specific peptidase 48	protein coding gene	no	ENST00000526044.5	0.035	0.033	0.763	0.825(7903)	0.873(613)	0.34(5908)	non tumor-specific	nAS	yes
UN_LIFR-AS1_LS0002	chr5:38595069|38644350:+	LIFR-AS1	LIFR antisense RNA 1	lncRNA gene	no	.	1.195	0.458	0.000	0.008(81)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0817	chr21:8426810|8442644:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	1.274	3.554	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC012103.1_LS001	chr8:57890146|57890601:-	AC012103.1	-	lncRNA gene	no	ENST00000522281.1	0.303	0.194	0.760	0.061(588)	0.118(83)	0.051(890)	non tumor-specific	nAS	yes
UN_EIF5B_LS0026	chr2:99398850|99399307:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	.	12.563	2.169	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_ACOT9_LS0024	chrX:23750831|23762437:-	ACOT9	acyl-CoA thioesterase 9	protein coding gene	no	.	2.507	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NFE2L1_LS008	chr17:48049160|48050607:+	NFE2L1	nuclear factor, erythroid 2 like 1	protein coding gene	no	ENST00000581441.1	0.129	0.106	0.634	0.37(3541)	0.453(318)	0.095(1656)	non tumor-specific	nAS	yes
UN_TSPAN3_UP_LS0003	chr15:77365225|77420676:-	TSPAN3	tetraspanin 3	protein coding gene	no	.	0.662	0.091	0.000	0.01(100)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_CHN1_LS0017	chr2:174915171|174915254:-	CHN1	chimerin 1	protein coding gene	no	.	1.365	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_AL138963.3_UP_LS0008	chr13:45311968|45317617:+	AL138963.3	-	lncRNA gene	no	.	1.239	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AC098850.4_LS006	chr17:16802516|16804566:+	AC098850.4	-	lncRNA gene	no	ENST00000602730.1	0.400	0.298	0.778	0(1)	0.001(1)	0.103(1784)	non tumor-specific	nAS	yes
UN_HDAC4_UP_LS0008	chr2:239730555|239730654:-	HDAC4	histone deacetylase 4	protein coding gene	no	.	5.236	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MROH3P_LS0017	chr1:200958199|200960332:+	MROH3P	maestro heat like repeat family member 3, pseudogene	pseudogene	no	.	1.893	0.384	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
ELF3_LS025	chr1:202014024|202015209:+	ELF3	E74 like ETS transcription factor 3	protein coding gene	no	ENST00000359651.7;ENST00000367284.9;ENST00000367283.7;ENST00000475698.1;ENST00000359651.7;ENST00000367284.9;ENST00000367283.7;ENST00000475698.1;ENST00000359651.7;ENST00000367284.9;ENST00000367283.7;ENST00000475698.1	227.296	140.365	4.283	0.907(8692)	0.97(681)	0.828(14386)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DNAJC27_LS0004	chr2:24953635|24955884:-	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27	protein coding gene	no	.	0.592	0.311	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
FKTN_LS013	chr9:105596657|105601145:+	FKTN	fukutin	protein coding gene	no	ENST00000602661.5;ENST00000223528.6;ENST00000448551.6;ENST00000357998.9;ENST00000642177.1;ENST00000602661.5;ENST00000223528.6;ENST00000448551.6;ENST00000357998.9;ENST00000642177.1;ENST00000602661.5;ENST00000223528.6;ENST00000448551.6;ENST00000357998.9;ENST00000642177.1	3.611	2.260	1.403	0.769(7369)	0.825(579)	0.683(11868)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LARS_LS009	chr5:146130158|146131019:-	LARS	leucyl-tRNA synthetase 1	protein coding gene	no	ENST00000394434.6;ENST00000274562.13;ENST00000510191.5	114.986	60.148	65.550	0.995(9537)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CERKL_LS020	chr2:181604079|181617255:-	CERKL	ceramide kinase like	protein coding gene	no	ENST00000497337.1	0.699	0.127	1.176	0.017(161)	0.041(29)	0.034(592)	non tumor-specific	exon_skip	yes
UN_F8_LS0020	chrX:154887784|154887817:-	F8	coagulation factor VIII	protein coding gene	no	.	2.214	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MIR100HG_LS008	chr11:122038243|122064180:-	MIR100HG	mir-100-let-7a-2-mir-125b-1 cluster host gene	lncRNA gene	yes	ENST00000647591.1;ENST00000648213.1;ENST00000649544.1	2.536	0.536	0.000	0.02(188)	0.009(6)	0(0)	non tumor-specific	nAS	yes
DCTN1_LS045	chr2:74378245|74378905:-	DCTN1	dynactin subunit 1	protein coding gene	no	ENST00000413111.5;ENST00000440727.1	0.058	0.034	0.719	0.156(1491)	0.15(105)	0.095(1653)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FGF11_LS0007	chr17:7440534|7440847:-	FGF11	fibroblast growth factor 11	protein coding gene	no	.	2.016	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FERMT1_LS0013	chr20:6079569|6084040:-	FERMT1	fermitin family member 1	protein coding gene	no	.	17.442	3.883	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_IQANK1_LS0020	chr8:143738263|143739859:+	IQANK1	IQ motif and ankyrin repeat containing 1	protein coding gene	no	.	1.007	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
SHMT2_LS001	chr12:57229587|57230803:+	SHMT2	serine hydroxymethyltransferase 2	protein coding gene	no	.;.	2.429	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRIN2B_LS0018	chr12:13615226|13619782:+	GRIN2B	glutamate ionotropic receptor NMDA type subunit 2B	protein coding gene	no	.	3.393	1.008	0.000	0.013(126)	0.081(57)	0(0)	non tumor-specific	nAS	no
UN_AGER_UP_LS0003	chr6:32184356|32184867:-	AGER	advanced glycosylation end-product specific receptor	protein coding gene	no	.	2.580	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2N_LS001	chr12:93405987|93407147:-	UBE2N	ubiquitin conjugating enzyme E2 N	protein coding gene	no	ENST00000548946.1	0.166	0.212	0.716	0.289(2768)	0.316(222)	0.011(197)	non tumor-specific	intron_retention	yes
UN_SPECC1L-ADORA2A_LS0093	chr22:24432027|24433131:+	SPECC1L-ADORA2A	SPECC1L-ADORA2A readthrough (NMD candidate)	protein coding gene	no	.	1.113	0.026	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LRP10_LS0141	chr14:22876278|22876337:-	LRP10	LDL receptor related protein 10	protein coding gene	no	.	1.422	2.555	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IL1RAPL1_LS0001	chrX:28588047|28618958:+	IL1RAPL1	interleukin 1 receptor accessory protein like 1	protein coding gene	no	.	2.962	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NRP1_LS0044	chr10:33334840|33335477:-	NRP1	neuropilin 1	protein coding gene	no	.	0.680	0.457	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
TOGARAM2_LS028	chr2:29045410|29051756:+	TOGARAM2	TOG array regulator of axonemal microtubules 2	protein coding gene	no	ENST00000379558.4;ENST00000465300.5;ENST00000379558.4;ENST00000465300.5;ENST00000379558.4;ENST00000465300.5	4.064	1.535	8.475	0.156(1490)	0.158(111)	0.928(16134)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ERP29_LS0017	chr12:112019915|112022473:-	ERP29	endoplasmic reticulum protein 29	protein coding gene	no	.	1.183	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RFX3_LS003	chr9:3247783|3248032:-	RFX3	regulatory factor X3	protein coding gene	no	ENST00000449234.1	0.510	0.180	0.691	0.049(472)	0.066(46)	0.043(747)	non tumor-specific	intron_retention	yes
UN_IGF1R_LS0033	chr15:98831563|98839791:-	IGF1R	insulin like growth factor 1 receptor	protein coding gene	yes	.	3.731	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
AKAP8L_LS008	chr19:15397280|15397520:-	AKAP8L	A-kinase anchoring protein 8 like	protein coding gene	no	ENST00000397410.9;ENST00000609519.5;ENST00000595465.6;ENST00000594594.6;ENST00000593845.5;ENST00000600065.5;ENST00000397410.9;ENST00000609519.5;ENST00000595465.6;ENST00000594594.6;ENST00000593845.5;ENST00000600065.5	80.392	34.157	151.238	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
KSR1_LS001	chr17:27456874|27483658:+	KSR1	kinase suppressor of ras 1	protein coding gene	no	ENST00000579309.1	0.082	0.014	0.695	0.172(1647)	0.17(119)	0.12(2082)	non tumor-specific	exon_skip	yes
UN_ACTG1_LS0216	chr17:81510941|81511200:+	ACTG1	actin gamma 1	protein coding gene	no	.	3.055	0.125	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_REPS1_LS0010	chr6:138945697|138946557:-	REPS1	RALBP1 associated Eps domain containing 1	protein coding gene	no	.	2.158	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CITED2_LS001	chr6:139373297|139373469:-	CITED2	Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2	protein coding gene	yes	ENST00000618718.1	4.455	0.000	0.638	0.001(5)	0(0)	0.063(1092)	non tumor-specific	nAS	yes
LCP1_LS027	chr13:46203230|46211732:-	LCP1	TOX high mobility group box family member 4	protein coding gene	no	ENST00000442275.1	1.277	0.514	0.773	0.07(670)	0.132(93)	0.085(1484)	non tumor-specific	alt_5prime;exon_skip	yes
YRDC_LS004	chr1:37807215|37807792:-	YRDC	yrdC N6-threonylcarbamoyltransferase domain containing	protein coding gene	no	ENST00000373044.2	7.563	4.017	12.344	0.935(8960)	0.954(670)	0.976(16973)	non tumor-specific	nAS	yes
TSG101_LS018	chr11:18516164|18519519:-	TSG101	tumor susceptibility 101	protein coding gene	yes	ENST00000536719.5;ENST00000251968.3;ENST00000545247.6;ENST00000535077.1	76.354	53.938	55.931	0.992(9509)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
PZP_LS022	chr12:9164259|9165139:-	PZP	PZP alpha-2-macroglobulin like	protein coding gene	no	ENST00000261336.6;ENST00000539983.5;ENST00000543108.1	6.785	9.878	0.887	0.604(5790)	0.662(465)	0.329(5723)	non tumor-specific	exon_skip;mutex_exons	yes
UN_IDUA_LS0021	chr4:1001563|1001646:+	IDUA	alpha-L-iduronidase	protein coding gene	no	.	3.266	0.475	0.000	0.01(97)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RALGDS_LS021	chr9:133104551|133105932:-	RALGDS	ral guanine nucleotide dissociation stimulator	protein coding gene	yes	ENST00000460587.1;ENST00000460587.1	0.308	0.615	0.727	0.722(6917)	0.694(487)	0.181(3143)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
WDR18_LS009	chr19:991139|991227:+	WDR18	WD repeat domain 18	protein coding gene	no	ENST00000251289.9	1.411	1.176	0.725	0.937(8974)	0.944(663)	0.268(4660)	non tumor-specific	alt_5prime;intron_retention	yes
APBA2_LS007	chr15:28919487|28921640:+	APBA2	amyloid beta precursor protein binding family A member 2	protein coding gene	no	ENST00000558804.5	0.158	0.142	1.099	0.244(2334)	0.14(98)	0.164(2842)	non tumor-specific	nAS	yes
AKR1C6P_LS001	chr10:4876053|4876637:-	AKR1C6P	aldo-keto reductase family 1 member C6, pseudogene	pseudogene	no	ENST00000432950.1	7.059	1.579	0.952	0.032(306)	0.075(53)	0.057(985)	non tumor-specific	nAS	yes
UN_ZFYVE28_LS0048	chr4:2354073|2363951:-	ZFYVE28	zinc finger FYVE-type containing 28	protein coding gene	no	.	1.199	0.047	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ZNF146_LS0043	chr19:36236511|36236848:-	ZNF146	zinc finger protein 146	protein coding gene	no	.	1.594	0.171	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CARMIL3_LS013	chr14:24057024|24057167:+	CARMIL3	capping protein regulator and myosin 1 linker 3	protein coding gene	no	ENST00000342740.5	3.032	1.122	2.257	0.202(1939)	0.057(40)	0.639(11109)	non tumor-specific	nAS	yes
UN_ISM1_UP_LS0002	chr20:13160132|13209133:+	ISM1	isthmin 1	protein coding gene	no	.	3.876	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL4_LS0117	chr15:66503529|66504654:-	RPL4	ribosomal protein L4	protein coding gene	no	.	41.635	16.936	0.000	0.009(84)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC099550.1_LS003	chr4:15362523|15419929:-	AC099550.1	-	lncRNA gene	no	ENST00000515495.1	0.497	0.000	0.601	0.002(15)	0(0)	0.018(320)	non tumor-specific	nAS	yes
UN_PTGES3_LS0041	chr12:56664497|56664776:-	PTGES3	prostaglandin E synthase 3	protein coding gene	no	.	93.216	0.513	0.000	0.008(78)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
KCNAB2_LS040	chr1:6097357|6098485:+	KCNAB2	potassium voltage-gated channel subfamily A regulatory beta subunit 2	protein coding gene	no	ENST00000378097.5;ENST00000378092.5;ENST00000352527.5;ENST00000341524.5;ENST00000164247.5;ENST00000378083.7;ENST00000458166.6;ENST00000481789.1;ENST00000378097.5;ENST00000378092.5;ENST00000352527.5;ENST00000341524.5;ENST00000164247.5;ENST00000378083.7;ENST00000458166.6;ENST00000481789.1;ENST00000378097.5;ENST00000378092.5;ENST00000352527.5;ENST00000341524.5;ENST00000164247.5;ENST00000378083.7;ENST00000458166.6;ENST00000481789.1	28.951	19.264	15.038	0.972(9312)	0.972(682)	0.977(16974)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HOXB13_LS001	chr17:48727043|48727993:-	HOXB13	homeobox B13	protein coding gene	yes	ENST00000290295.7	28.795	24.480	1.847	0.526(5040)	0.276(194)	0.165(2868)	non tumor-specific	nAS	yes
TNS2_LS022	chr12:53058827|53059047:+	TNS2	tensin 2	protein coding gene	no	ENST00000379902.7;ENST00000314276.7;ENST00000314250.10;ENST00000546602.5;ENST00000552570.5;ENST00000549700.5;ENST00000546759.1	28.560	37.896	111.415	0.972(9310)	0.993(697)	0.955(16602)	non tumor-specific	alt_3prime;alt_5prime	yes
AL627309.3_LS001	chr1:90050|90287:-	AL627309.3	-	lncRNA gene	no	ENST00000495576.1	0.492	0.246	0.857	0.764(7322)	0.758(532)	0.417(7243)	non tumor-specific	nAS	yes
UN_POLR2A_LS0243	chr17:7513453|7513496:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	19.212	8.991	0.000	0.022(212)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_MARCH2_UP_LS0002	chr19:8403611|8404700:+	MARCH2	membrane associated ring-CH-type finger 2	protein coding gene	no	.	1.108	0.089	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RAB5C_LS0017	chr17:42125248|42125412:+	RAB5C	RAB5C, member RAS oncogene family	protein coding gene	no	.	1.952	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NSUN7_LS0008	chr4:40760492|40774265:+	NSUN7	NOP2/Sun RNA methyltransferase family member 7	protein coding gene	no	.	1.864	0.227	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_MLEC_LS0008	chr12:120693128|120694091:+	MLEC	malectin	protein coding gene	no	.	3.577	0.785	0.000	0.025(237)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_GAS2L1_LS0030	chr22:29311629|29311905:-	GAS2L1	growth arrest specific 2 like 1	protein coding gene	no	.	3.765	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
KCNU1_LS015	chr8:36864521|36905708:+	KCNU1	potassium calcium-activated channel subfamily U member 1	protein coding gene	no	ENST00000399881.7;ENST00000522372.5	8.718	0.000	0.698	0.011(105)	0(0)	0.017(292)	non tumor-specific	nAS	yes
UN_TRIM17_LS0006	chr1:228409271|228409389:-	TRIM17	tripartite motif containing 17	protein coding gene	no	.	4.654	0.371	0.000	0.029(280)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SMARCA1_LS007	chrX:129465962|129468773:-	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein coding gene	no	ENST00000617310.4;ENST00000371122.8;ENST00000371123.5;ENST00000371121.4	79.999	66.428	55.208	0.951(9111)	0.996(699)	0.948(16479)	non tumor-specific	nAS	yes
UN_HMCN1_LS0020	chr1:186081400|186082865:+	HMCN1	hemicentin 1	protein coding gene	no	.	1.194	0.234	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
NIT2_LS015	chr3:100345678|100346181:+	NIT2	nitrilase family member 2	protein coding gene	yes	ENST00000394140.8;ENST00000480073.5;ENST00000497785.1;ENST00000394140.8;ENST00000480073.5;ENST00000497785.1;ENST00000394140.8;ENST00000480073.5;ENST00000497785.1	145.474	84.608	54.969	0.998(9558)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC104257.1_LS004	chr8:131312748|131315760:+	AC104257.1	-	lncRNA gene	no	ENST00000519695.5;ENST00000519005.1	1.147	0.085	0.764	0.021(203)	0.011(8)	0.02(342)	non tumor-specific	nAS	yes
UN_PCDH15_LS0046	chr10:54969271|54969482:+	PCDH15	protocadherin related 15	protein coding gene	no	.	3.098	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
NBR1_LS006	chr17:43175901|43177936:+	NBR1	NBR1 autophagy cargo receptor	protein coding gene	no	ENST00000341165.10;ENST00000586650.5;ENST00000590996.5;ENST00000589872.1	44.792	43.272	32.421	0.963(9225)	0.989(694)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_AKR1C1_UP_LS0016	chr10:4908420|4909533:+	AKR1C1	aldo-keto reductase family 1 member C1	protein coding gene	no	.	2.353	0.087	0.000	0.021(199)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_SPATS2_LS0048	chr12:49522853|49523180:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	.	2.200	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MUC17_LS0147	chr7:101034501|101040868:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.	3.252	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VPS9D1_LS0043	chr16:89712805|89716462:-	VPS9D1	VPS9 domain containing 1	protein coding gene	no	.	3.206	0.623	0.000	0.035(332)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_MT-ATP6_LS0012	chrM:8649|8811:-	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	protein coding gene	no	.	129.729	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RABL2A_LS0007	chr2:113627862|113628597:+	RABL2A	RAB, member of RAS oncogene family like 2A	protein coding gene	no	.	1.584	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SPDYA_LS010	chr2:28814686|28815997:+	SPDYA	speedy/RINGO cell cycle regulator family member A	protein coding gene	no	ENST00000462832.5;ENST00000334056.9;ENST00000449210.1	1.144	0.000	0.701	0.021(203)	0(0)	0.082(1428)	non tumor-specific	exon_skip	yes
NUP50-DT_LS002	chr22:45134797|45163572:-	NUP50-DT	NUP50 divergent transcript	lncRNA gene	no	ENST00000432502.1	0.012	0.020	0.646	0.388(3713)	0.301(211)	0.076(1328)	non tumor-specific	nAS	yes
NEURL4_LS034	chr17:7327230|7327440:-	NEURL4	neuralized E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000315614.11;ENST00000399464.6;ENST00000573186.5	8.972	6.429	13.316	0.864(8280)	0.92(646)	0.974(16929)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL391832.2_UP_LS0001	chr1:234973323|234980656:-	AL391832.2	-	lncRNA gene	no	.	2.616	0.259	0.000	0.023(225)	0.014(10)	0(0)	non tumor-specific	nAS	no
KRT8P12_LS002	chr3:160566153|160567543:+	KRT8P12	keratin 8 pseudogene 12	pseudogene	no	ENST00000468527.1	0.412	0.183	0.700	0.136(1299)	0.094(66)	0.176(3062)	non tumor-specific	nAS	yes
RASA4_LS015	chr7:102594559|102595305:-	RASA4	RAS p21 protein activator 4	protein coding gene	no	ENST00000262940.11;ENST00000461209.5;ENST00000449970.6;ENST00000462172.5;ENST00000523568.5;ENST00000521397.1	1.024	1.500	9.621	0.941(9017)	0.956(671)	0.905(15732)	non tumor-specific	nAS	yes
UN_XYLT2_LS0015	chr17:50357252|50358083:+	XYLT2	xylosyltransferase 2	protein coding gene	no	.	5.060	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RERE_LS0226	chr1:8656441|8790606:-	RERE	arginine-glutamic acid dipeptide repeats	protein coding gene	yes	.	2.645	0.056	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ACTG1_LS0251	chr17:81511077|81511394:+	ACTG1	actin gamma 1	protein coding gene	no	.	15.924	2.667	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
GABARAPL1_LS024	chr12:10213999|10218063:+	GABARAPL1	GABA type A receptor associated protein like 1	protein coding gene	no	ENST00000545290.1	0.042	0.085	0.680	0.172(1652)	0.319(224)	0.03(517)	non tumor-specific	alt_5prime	yes
UN_CRNDE_LS0033	chr16:54925236|54928494:-	CRNDE	colorectal neoplasia differentially expressed	lncRNA gene	no	.	1.111	0.105	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AK9_LS0030	chr6:109675756|109685844:-	AK9	adenylate kinase 9	protein coding gene	no	.	0.960	0.326	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
RAB24_LS009	chr5:177303320|177303407:-	RAB24	RAB24, member RAS oncogene family	protein coding gene	no	ENST00000393611.6;ENST00000512758.1	7.443	3.035	14.801	0.976(9353)	0.962(675)	0.978(17002)	non tumor-specific	alt_5prime;intron_retention	yes
COL6A2_LS025	chr21:46120577|46121061:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	ENST00000300527.8;ENST00000310645.9;ENST00000409416.5;ENST00000397763.5;ENST00000413758.1	325.706	213.344	411.648	0.989(9476)	0.997(700)	0.979(17012)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ACTL6A_LS013	chr3:179576311|179576620:+	ACTL6A	actin like 6A	protein coding gene	no	ENST00000429709.6;ENST00000450518.6;ENST00000392662.5;ENST00000487978.5;ENST00000467615.5	44.656	17.672	42.775	0.993(9516)	0.997(700)	0.979(17016)	non tumor-specific	nAS	yes
UN_ZNF133_LS0014	chr20:18305178|18305668:+	ZNF133	zinc finger protein 133	protein coding gene	no	.	1.316	0.583	0.000	0.132(1265)	0.141(99)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_TTC33_LS0042	chr5:40721274|40728345:-	TTC33	tetratricopeptide repeat domain 33	protein coding gene	no	.	0.271	0.202	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
EGFL8_LS004	chr6:32166266|32166498:+	EGFL8	EGF like domain multiple 8	protein coding gene	no	ENST00000333845.10;ENST00000395512.5;ENST00000432129.1	1.100	0.711	3.957	0.793(7595)	0.84(590)	0.861(14971)	non tumor-specific	alt_5prime;intron_retention	yes
UN_PHF10_LS0025	chr6:169716088|169718788:-	PHF10	PHD finger protein 10	protein coding gene	no	.	0.490	0.059	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_RPS15A_LS0008	chr16:18783091|18784728:+	RPS15A	ribosomal protein S15a	protein coding gene	no	.	37.015	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RMDN3_LS013	chr15:40744227|40744977:-	RMDN3	regulator of microtubule dynamics 3	protein coding gene	no	ENST00000558232.5	0.060	0.330	0.698	0.196(1881)	0.214(150)	0.137(2381)	non tumor-specific	alt_3prime	yes
UN_CDK12_LS0045	chr17:39547830|39550308:+	CDK12	cyclin dependent kinase 12	protein coding gene	no	.	0.258	0.002	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_EBF3_LS0004	chr10:129839300|129840245:-	EBF3	EBF transcription factor 3	protein coding gene	yes	.	1.905	0.221	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NUDT4_LS0036	chr12:93400752|93400885:+	NUDT4	nudix hydrolase 4	protein coding gene	no	.	35.735	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_AC092167.1_UP_LS0005	chr7:110612312|110621988:-	AC092167.1	-	lncRNA gene	no	.	2.006	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WDFY4_LS0006	chr10:48685532|48709716:+	WDFY4	WDFY family member 4	protein coding gene	no	.	1.757	0.185	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_S100A1_LS0008	chr1:153628496|153630499:-	S100A1	S100 calcium binding protein A1	protein coding gene	no	.	8.022	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HNRNPA3_LS0052	chr2:177217755|177219247:+	HNRNPA3	heterogeneous nuclear ribonucleoprotein A3	protein coding gene	no	.	198.534	15.449	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FNIP2_LS018	chr4:158861776|158868102:+	FNIP2	folliculin interacting protein 2	protein coding gene	no	ENST00000264433.10;ENST00000512986.5	15.990	19.059	8.347	0.859(8232)	0.964(677)	0.953(16567)	non tumor-specific	nAS	yes
NPAS2_LS003	chr2:100904786|100925146:+	NPAS2	neuronal PAS domain protein 2	protein coding gene	yes	ENST00000335681.9;ENST00000427413.5	7.840	5.708	8.580	0.848(8126)	0.912(640)	0.923(16036)	non tumor-specific	alt_5prime;exon_skip	yes
NBR1_LS013	chr17:43189802|43190609:+	NBR1	NBR1 autophagy cargo receptor	protein coding gene	no	ENST00000341165.10;ENST00000542611.5;ENST00000590996.5;ENST00000589872.1	80.481	75.741	52.583	0.977(9358)	0.994(698)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
DHX35_LS030	chr20:39030775|39034183:+	DHX35	DEAH-box helicase 35	protein coding gene	no	ENST00000493450.1	0.054	0.089	0.647	0.009(87)	0.007(5)	0.015(258)	non tumor-specific	nAS	yes
UN_TGM4_LS0006	chr3:44882215|44885325:+	TGM4	transglutaminase 4	protein coding gene	no	.	12.903	2.631	0.000	0.022(210)	0.048(34)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
HNRNPLL_LS019	chr2:38582168|38583841:-	HNRNPLL	heterogeneous nuclear ribonucleoprotein L like	protein coding gene	no	ENST00000449105.7;ENST00000409636.5;ENST00000272249.7;ENST00000410076.5;ENST00000488099.1	43.541	29.704	32.512	0.917(8781)	0.979(687)	0.979(17015)	non tumor-specific	alt_3prime	yes
ARID5B_LS001	chr10:61901730|61902159:+	ARID5B	AT-rich interaction domain 5B	protein coding gene	no	ENST00000279873.11;ENST00000644638.1	0.465	0.614	1.698	0.735(7046)	0.806(566)	0.643(11173)	non tumor-specific	exon_skip	yes
UN_AC023421.2_UP_LS0007	chr18:45768157|45778106:-	AC023421.2	-	lncRNA gene	no	.	3.552	0.863	0.000	0.017(164)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_AC012368.1_LS0019	chr2:64248538|64251119:+	AC012368.1	-	lncRNA gene	no	.	0.898	0.096	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
HIPK4_LS001	chr19:40379769|40380323:-	HIPK4	homeodomain interacting protein kinase 4	protein coding gene	no	ENST00000291823.2	1.270	0.134	0.847	0.024(227)	0.026(18)	0.396(6879)	non tumor-specific	nAS	yes
AL359555.4_LS004	chr20:38260356|38289027:+	AL359555.4	-	lncRNA gene	no	ENST00000451435.1	0.351	0.175	0.822	0.06(572)	0.151(106)	0.182(3165)	non tumor-specific	exon_skip	yes
UN_LGSN_UP_LS0039	chr6:63382556|63404506:-	LGSN	lengsin, lens protein with glutamine synthetase domain	protein coding gene	no	.	4.362	0.474	0.000	0.062(594)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_HDLBP_LS0079	chr2:241230842|241232163:-	HDLBP	high density lipoprotein binding protein	protein coding gene	no	.	7.943	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ELP3_LS027	chr8:28160456|28161997:+	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	ENST00000521015.5;ENST00000256398.12;ENST00000380353.8;ENST00000537665.2;ENST00000523687.5;ENST00000524103.5;ENST00000518112.5;ENST00000519261.5;ENST00000523357.5	37.010	23.151	33.272	0.996(9545)	0.996(699)	0.979(17018)	non tumor-specific	exon_skip	yes
GBE1_LS006	chr3:81581275|81586092:-	GBE1	1,4-alpha-glucan branching enzyme 1	protein coding gene	no	ENST00000429644.6;ENST00000489715.1	50.408	45.217	28.890	0.985(9436)	0.996(699)	0.978(17003)	non tumor-specific	nAS	yes
SLC44A3_LS004	chr1:94820723|94824493:+	SLC44A3	solute carrier family 44 member 3	protein coding gene	no	ENST00000467909.5;ENST00000532427.5	0.380	0.514	1.165	0.552(5289)	0.782(549)	0.207(3598)	non tumor-specific	exon_skip	yes
UN_SLC52A1_LS0005	chr17:5034661|5034861:-	SLC52A1	solute carrier family 52 member 1	protein coding gene	no	.	0.986	0.297	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL136295.4_LS0006	chr14:24180896|24181513:-	AL136295.4	-	protein coding gene	no	.	6.253	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NEK11_LS0020	chr3:131048528|131048882:+	NEK11	NIMA related kinase 11	protein coding gene	no	.	3.792	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
C6orf118_LS005	chr6:165281693|165289987:-	C6orf118	chromosome 6 open reading frame 118	protein coding gene	no	.;.	4.492	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MYBPHL_LS009	chr1:109297189|109297422:-	MYBPHL	myosin binding protein H like	protein coding gene	no	ENST00000357155.1	5.812	1.085	1.141	0.08(765)	0.132(93)	0.309(5367)	non tumor-specific	alt_5prime	yes
AP5Z1_LS012	chr7:4785048|4785415:+	AP5Z1	adaptor related protein complex 5 subunit zeta 1	protein coding gene	no	ENST00000647984.1;ENST00000348624.5;ENST00000477680.6;ENST00000649063.1;ENST00000650310.1;ENST00000648925.1;ENST00000496303.6;ENST00000647628.1;ENST00000649315.1;ENST00000649419.1	31.930	14.828	32.191	0.986(9445)	0.996(699)	0.979(17018)	non tumor-specific	exon_skip	yes
USP4_LS023	chr3:49310737|49324702:-	USP4	ubiquitin specific peptidase 4	protein coding gene	yes	ENST00000351842.8	3.650	3.468	6.633	0.923(8840)	0.962(675)	0.939(16320)	non tumor-specific	exon_skip	yes
UN_FER1L4_LS0016	chr20:35560693|35561852:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	.	5.866	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR8Q1P_UP_LS0002	chr11:124289179|124570788:+	OR8Q1P	olfactory receptor family 8 subfamily Q member 1 pseudogene	pseudogene	no	.	1.830	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
SLC52A1_LS011	chr17:5034747|5034861:-	SLC52A1	solute carrier family 52 member 1	protein coding gene	no	ENST00000424747.1;ENST00000575919.1	1.583	0.539	1.049	0.28(2679)	0.258(181)	0.133(2309)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NPS_LS002	chr10:127549570|127552460:+	NPS	neuropeptide S	protein coding gene	no	ENST00000398023.2	1.168	0.193	0.958	0.007(63)	0.001(1)	0.007(125)	non tumor-specific	nAS	yes
CDC73_LS016	chr1:193186712|193203795:+	CDC73	cell division cycle 73	protein coding gene	yes	ENST00000649613.1	1.239	0.005	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	yes
AARS2_LS007	chr6:44302910|44303286:-	AARS2	alanyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	.;.	1.581	0.001	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RAD1_UP_LS0004	chr5:34929133|34929649:-	RAD1	ribonuclease A family member k6	protein coding gene	no	.	0.404	0.154	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_SMIM34B_LS0002	chr21:7785897|7788861:-	SMIM34B	small integral membrane protein 34B	protein coding gene	no	.	2.607	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SGIP1_UP_LS0008	chr1:66417060|66439440:+	SGIP1	SH3GL interacting endocytic adaptor 1	protein coding gene	no	.	4.546	1.636	0.000	0.089(854)	0.194(136)	0(0)	non tumor-specific	nAS	no
IRAK4_LS016	chr12:43768272|43771220:+	IRAK4	interleukin 1 receptor associated kinase 4	protein coding gene	no	ENST00000550616.5;ENST00000613694.4;ENST00000551736.5;ENST00000448290.6;ENST00000550616.5;ENST00000613694.4;ENST00000551736.5;ENST00000448290.6	3.218	2.179	2.417	0.842(8065)	0.92(646)	0.763(13258)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRAPPC12_LS009	chr2:3424663|3443779:+	TRAPPC12	trafficking protein particle complex 12	protein coding gene	no	ENST00000382110.6;ENST00000324266.9;ENST00000457845.4;ENST00000441983.5;ENST00000417243.5;ENST00000469147.5;ENST00000441099.5	39.316	28.467	37.461	0.996(9544)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GLT8D1_LS0001	chr3:52695028|52695190:-	GLT8D1	glycosyltransferase 8 domain containing 1	protein coding gene	no	.	21.418	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ADH1B_LS0074	chr4:99318886|99318993:-	ADH1B	alcohol dehydrogenase 1B (class I), beta polypeptide	protein coding gene	no	.	0.818	0.836	0.000	0.002(15)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
NSMF_LS028	chr9:137455298|137456411:-	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein coding gene	no	.;.	8.141	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PHB_LS008	chr17:49411839|49414835:-	PHB	prohibitin	protein coding gene	yes	ENST00000506273.1	0.028	0.024	0.678	0.821(7868)	0.859(603)	0.127(2213)	non tumor-specific	exon_skip	yes
UN_RASSF4_LS0016	chr10:44982663|44983991:+	RASSF4	Ras and Rab interactor 2	protein coding gene	yes	.	4.540	1.131	0.000	0.037(353)	0.031(22)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_KIAA1217_LS0017	chr10:24118921|24141597:+	KIAA1217	KIAA1217	protein coding gene	no	.	1.563	1.311	0.000	0.018(172)	0.104(73)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SIPA1L1_LS0085	chr14:71686687|71698981:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	.	1.363	0.451	0.000	0.02(189)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
LILRA5_LS006	chr19:54312370|54312537:-	LILRA5	leukocyte immunoglobulin like receptor A5	protein coding gene	no	ENST00000432233.7;ENST00000446712.4	1.322	1.199	2.171	0.548(5246)	0.624(438)	0.651(11313)	non tumor-specific	exon_skip	yes
SLC22A10_LS005	chr11:63290567|63291540:+	SLC22A10	solute carrier family 22 member 10	protein coding gene	no	ENST00000533483.5;ENST00000533176.1;ENST00000332793.10;ENST00000532724.5;ENST00000526800.1	1.322	2.570	1.092	0.075(722)	0.142(100)	0.087(1514)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_CLEC4F_LS0001	chr2:70809209|70809739:-	CLEC4F	C-type lectin domain family 4 member F	protein coding gene	no	.	3.561	0.153	0.000	0.006(53)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
EIF2A_LS007	chr3:150558462|150562557:+	EIF2A	eukaryotic translation initiation factor 2 subunit alpha	protein coding gene	no	ENST00000273435.9	0.288	0.179	0.588	0.014(133)	0.013(9)	0.012(201)	non tumor-specific	alt_3prime;exon_skip	yes
SYNE2_LS003	chr14:63909227|63940614:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000357395.7;ENST00000344113.8;ENST00000341472.9;ENST00000554584.5	3.349	2.302	2.579	0.405(3885)	0.554(389)	0.773(13429)	non tumor-specific	nAS	yes
UN_FUCA2_LS0002	chr6:143496037|143497389:-	FUCA2	alpha-L-fucosidase 2	protein coding gene	no	.	13.714	0.077	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PRKRA_UP_LS0002	chr2:178463539|178465794:-	PRKRA	protein activator of interferon induced protein kinase EIF2AK2	protein coding gene	no	.	0.867	0.121	0.000	0.011(101)	0.01(7)	0(0)	non tumor-specific	nAS	no
FCHO1_LS002	chr19:17747814|17754317:+	FCHO1	FCH and mu domain containing endocytic adaptor 1	protein coding gene	no	ENST00000594202.5;ENST00000600676.5;ENST00000600209.5;ENST00000596309.5;ENST00000598539.5;ENST00000597474.5;ENST00000593385.5;ENST00000600201.5;ENST00000599236.5;ENST00000601247.5	0.264	0.684	4.944	0.241(2309)	0.093(65)	0.497(8634)	non tumor-specific	exon_skip;mutex_exons	yes
LINC00366_LS002	chr13:38577710|38578729:+	LINC00366	long intergenic non-protein coding RNA 366	lncRNA gene	no	ENST00000441430.1	0.086	0.000	0.595	0(2)	0(0)	0.001(11)	non tumor-specific	nAS	yes
RPS4Y2_LS003	chrY:20760048|20761284:+	RPS4Y2	ribosomal protein S4 Y-linked 2	protein coding gene	no	ENST00000629237.1	2.948	0.411	0.687	0.037(353)	0.053(37)	0.038(669)	non tumor-specific	nAS	yes
SPP1_LS009	chr4:87977097|87980393:+	SPP1	secreted phosphoprotein 1	protein coding gene	no	ENST00000360804.4	2.751	0.890	3.043	0.868(8316)	0.758(532)	0.584(10149)	non tumor-specific	exon_skip	yes
UN_AHNAK2_LS0458	chr14:104949195|104949691:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	2.472	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PXYLP1_LS028	chr3:141274623|141278342:+	PXYLP1	2-phosphoxylose phosphatase 1	protein coding gene	no	ENST00000508812.1	0.154	0.117	0.905	0.473(4532)	0.386(271)	0.37(6440)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPS4Y1_UP_LS0001	chrY:2824705|2841028:+	RPS4Y1	ribosomal protein S4 Y-linked 1	protein coding gene	no	.	0.990	0.476	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC092474.2_UP_LS0002	chrX:40851846|40897619:-	AC092474.2	-	pseudogene	no	.	11.744	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBAP2L_LS0034	chr1:154251302|154251569:-	UBAP2L	ubiquitin associated protein 2 like	protein coding gene	no	.	1.982	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PAFAH2_LS015	chr1:25990863|25997448:-	PAFAH2	platelet activating factor acetylhydrolase 2	protein coding gene	no	ENST00000439092.6;ENST00000441420.1	0.445	0.368	1.281	0.307(2943)	0.483(339)	0.609(10583)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MIR663AHG_UP_LS0005	chr20:28559671|28562307:-	MIR663AHG	MIR663A host gene	lncRNA gene	no	.	1.186	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RRBP1_LS0169	chr20:17659124|17659305:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.	52.970	4.606	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_GNRH2_UP_LS0004	chr20:3043037|3043557:+	GNRH2	gonadotropin releasing hormone 2	protein coding gene	no	.	5.595	1.637	0.000	0.002(17)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_LINC00051_LS0001	chr8:142198456|142199547:+	LINC00051	long intergenic non-protein coding RNA 51	lncRNA gene	no	.	2.576	0.663	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
INPP5K_LS001	chr17:1495879|1496060:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	ENST00000421807.6;ENST00000406424.8;ENST00000320345.10;ENST00000350761.9;ENST00000487039.1	78.151	48.537	77.311	0.986(9449)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
UN_GNL2_LS0006	chr1:37583781|37583867:-	GNL2	G protein nucleolar 2	protein coding gene	no	.	4.826	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_SLC20A1_LS0003	chr2:112647738|112652706:+	SLC20A1	solute carrier family 20 member 1	protein coding gene	no	.	5.957	2.189	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_AC004870.2_LS0001	chr7:46969913|46971260:+	AC004870.2	-	lncRNA gene	no	.	1.262	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CERS6-AS1_LS007	chr2:168774951|168786357:-	CERS6-AS1	CERS6 antisense RNA 1	lncRNA gene	no	ENST00000425636.6	0.059	0.058	0.770	0.859(8226)	0.818(574)	0.001(13)	non tumor-specific	nAS	yes
UN_CAPN10_LS0010	chr2:240596048|240596319:+	CAPN10	calpain 10	protein coding gene	no	.	3.043	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_SYT2_LS0011	chr1:202602154|202603490:+	SYT2	synaptotagmin 2	protein coding gene	no	.	0.940	0.106	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
RILP_LS008	chr17:1649306|1649412:-	RILP	Rab interacting lysosomal protein	protein coding gene	no	ENST00000301336.6	3.674	4.057	7.347	0.552(5290)	0.695(488)	0.915(15902)	non tumor-specific	exon_skip	yes
LLGL2_LS043	chr17:75573980|75574213:+	LLGL2	LLGL scribble cell polarity complex component 2	protein coding gene	no	ENST00000167462.9;ENST00000392550.7;ENST00000577200.5;ENST00000545227.6;ENST00000578638.5;ENST00000582393.5;ENST00000578034.1	70.643	51.924	17.574	0.993(9518)	0.994(698)	0.953(16561)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_LINC01310_UP_LS0001	chr22:48851202|48865570:+	LINC01310	long intergenic non-protein coding RNA 1310	lncRNA gene	no	.	1.033	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCND1_LS0061	chr11:69652040|69652174:+	CCND1	cyclin D1	protein coding gene	yes	.	25.194	0.108	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ZMYND8_LS036	chr20:47347926|47348017:-	ZMYND8	zinc finger MYND-type containing 8	protein coding gene	no	ENST00000441977.1	0.180	0.137	0.880	0.424(4064)	0.494(347)	0.26(4523)	non tumor-specific	intron_retention	yes
UN_CDC42BPG_LS0010	chr11:64825497|64826470:-	CDC42BPG	CDC42 binding protein kinase gamma	protein coding gene	no	.	2.722	0.258	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
TCP10L2_LS005	chr6:167164560|167165209:+	TCP10L2	t-complex 10 like 2, pseudogene	protein coding gene	no	ENST00000539001.5	0.584	0.186	0.775	0.016(157)	0.038(27)	0.042(735)	non tumor-specific	nAS	yes
LCMT1_LS003	chr16:25111768|25128475:+	LCMT1	leucine carboxyl methyltransferase 1	protein coding gene	no	ENST00000577157.1;ENST00000577157.1	3.733	2.343	2.674	0.296(2836)	0.313(220)	0.891(15488)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DIP2C_LS0043	chr10:349454|350400:-	DIP2C	disco interacting protein 2 homolog C	protein coding gene	no	.	1.906	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
USP42_LS005	chr7:6111951|6115323:+	USP42	ubiquitin specific peptidase 42	protein coding gene	no	ENST00000451154.5	0.062	0.029	0.653	0.011(110)	0.007(5)	0.012(217)	non tumor-specific	exon_skip	yes
TMTC4_LS010	chr13:100635195|100636532:-	TMTC4	transmembrane O-mannosyltransferase targeting cadherins 4	protein coding gene	no	ENST00000376234.7;ENST00000342624.9;ENST00000328767.9;ENST00000489713.5;ENST00000462211.5;ENST00000478272.1	15.112	9.287	8.052	0.978(9367)	0.991(696)	0.966(16795)	non tumor-specific	exon_skip;intron_retention	yes
GGA2_LS008	chr16:23478501|23478883:-	GGA2	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein coding gene	no	ENST00000309859.8;ENST00000569182.1	81.310	54.609	40.099	0.985(9440)	0.994(698)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HEG1_LS0013	chr3:124973901|124977859:-	HEG1	heart development protein with EGF like domains 1	protein coding gene	no	.	2.948	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_CEACAM22P_LS0002	chr19:44539366|44541000:-	CEACAM22P	CEA cell adhesion molecule 22, pseudogene	pseudogene	no	.	5.407	0.956	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC007637.1_LS0002	chr12:109111472|109113261:+	AC007637.1	-	lncRNA gene	no	.	1.569	0.343	0.000	0.021(201)	0.024(17)	0(0)	non tumor-specific	nAS	no
TMC6_LS004	chr17:78113621|78122605:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	ENST00000306591.11	0.220	0.093	0.674	0.594(5687)	0.393(276)	0.041(710)	non tumor-specific	alt_3prime	yes
DNA2_LS017	chr10:68445083|68446296:-	DNA2	DNA replication helicase/nuclease 2	protein coding gene	no	ENST00000551118.6;ENST00000358410.7;ENST00000399179.6;ENST00000399180.3	4.715	1.209	1.856	0.581(5568)	0.245(172)	0.801(13922)	non tumor-specific	exon_skip	yes
TRNT1_LS015	chr3:3137453|3144584:+	TRNT1	tRNA nucleotidyl transferase 1	protein coding gene	no	.;.	2.456	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FAM172A_LS0045	chr5:94053227|94055660:-	FAM172A	family with sequence similarity 172 member A	protein coding gene	yes	.	29.225	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COLEC10_LS0004	chr8:119037603|119038055:+	COLEC10	collectin subfamily member 10	protein coding gene	no	.	7.504	0.229	0.000	0.014(134)	0.026(18)	0(0)	non tumor-specific	nAS	no
SNRNP25_LS003	chr16:54058|55459:+	SNRNP25	small nuclear ribonucleoprotein U11/U12 subunit 25	protein coding gene	no	ENST00000293861.7;ENST00000383018.7;ENST00000397876.6;ENST00000493672.1;ENST00000417493.1;ENST00000293861.7;ENST00000383018.7;ENST00000397876.6;ENST00000493672.1;ENST00000417493.1	86.040	40.949	57.889	0.985(9435)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UBE2C_LS005	chr20:45813464|45815541:+	UBE2C	ubiquitin conjugating enzyme E2 C	protein coding gene	yes	ENST00000352551.9	1.551	1.195	0.921	0.696(6665)	0.225(158)	0.152(2639)	non tumor-specific	exon_skip;mutex_exons	yes
UN_HNRNPA1P48_LS0024	chr16:51646409|51646476:+	HNRNPA1P48	heterogeneous nuclear ribonucleoprotein A1 pseudogene 48	protein coding gene	no	.	66.193	2.434	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RAD51C_LS0019	chr17:58720615|58720746:+	RAD51C	RAD51 paralog C	protein coding gene	yes	.	2.118	0.281	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ACAP2_LS0020	chr3:195345317|195365482:-	ACAP2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein coding gene	no	.	4.385	0.365	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FRMD4B_LS041	chr3:69432761|69541155:-	FRMD4B	FERM domain containing 4B	protein coding gene	no	ENST00000497880.5	0.860	0.134	0.798	0.02(188)	0.026(18)	0.105(1821)	non tumor-specific	nAS	yes
UN_ZNF675_LS0028	chr19:23550049|23551619:+	ZNF675	zinc finger protein 675	protein coding gene	no	.	5.953	1.478	0.000	0.003(30)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_BRPF3_LS0023	chr6:36210528|36210880:+	BRPF3	bromodomain and PHD finger containing 3	protein coding gene	no	.	2.948	0.349	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
CHI3L2_LS017	chr1:111236153|111238750:+	CHI3L2	chitinase 3 like 2	protein coding gene	no	ENST00000445067.6;ENST00000369744.6;ENST00000369748.8;ENST00000466741.5;ENST00000477185.6;ENST00000524472.5;ENST00000533831.6	30.303	16.704	7.165	0.714(6845)	0.744(522)	0.848(14736)	non tumor-specific	exon_skip	yes
AC025871.1_LS003	chr8:28449106|28455624:+	AC025871.1	-	lncRNA gene	no	ENST00000518819.1	0.432	0.003	0.804	0.025(235)	0.003(2)	0.002(36)	non tumor-specific	nAS	yes
UN_RNU6-1059P_UP_LS0001	chr4:95935644|95967981:-	RNU6-1059P	RNA, U6 small nuclear 1059, pseudogene	small non-coding RNA gene	no	.	2.440	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01411_LS007	chr5:174517905|174528367:+	LINC01411	long intergenic non-protein coding RNA 1411	lncRNA gene	no	ENST00000507361.5	1.476	0.000	0.765	0.001(11)	0(0)	0.007(121)	non tumor-specific	nAS	yes
RNF20_LS016	chr9:101551819|101552141:+	RNF20	ring finger protein 20	protein coding gene	no	ENST00000389120.7	44.273	29.867	20.184	0.983(9419)	0.994(698)	0.978(16994)	non tumor-specific	exon_skip	yes
UN_FGF12_LS0059	chr3:192727323|192738861:-	FGF12	fibroblast growth factor 12	protein coding gene	no	.	3.521	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip	no
EPOR_LS022	chr19:11383535|11384093:-	EPOR	erythropoietin receptor	protein coding gene	no	ENST00000591958.5	0.478	0.000	0.700	0.014(137)	0.001(1)	0.032(555)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ORC4_LS028	chr2:147975975|148020633:-	ORC4	origin recognition complex subunit 4	protein coding gene	no	ENST00000392857.9;ENST00000495601.1;ENST00000392857.9;ENST00000495601.1	19.829	13.921	10.443	0.881(8440)	0.909(638)	0.973(16913)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PCOLCE_LS0001	chr7:100602418|100602464:-	PCOLCE	procollagen C-endopeptidase enhancer	protein coding gene	no	.	15.817	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
EDEM2_LS017	chr20:35142478|35144979:-	EDEM2	ER degradation enhancing alpha-mannosidase like protein 2	protein coding gene	no	ENST00000374492.7;ENST00000374491.3	56.998	31.503	18.163	0.99(9486)	0.997(700)	0.978(16999)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
NUTM2A-AS1_LS006	chr10:87246212|87288442:-	NUTM2A-AS1	NUTM2A antisense RNA 1	lncRNA gene	no	ENST00000451940.6;ENST00000456104.5;ENST00000433530.5;ENST00000447424.5;ENST00000433920.5;ENST00000446751.5	8.197	5.323	15.473	0.987(9457)	0.994(698)	0.972(16898)	non tumor-specific	nAS	yes
UN_AC087721.2_LS0034	chr15:41297929|41298041:+	AC087721.2	-	protein coding gene	no	.	3.314	2.258	0.000	0.322(3087)	0.399(280)	0(0)	non tumor-specific	nAS	no
TUBB3_LS001	chr16:89921431|89932571:+	TUBB3	tubulin beta 3 class III	protein coding gene	no	ENST00000555810.5	0.050	0.086	0.757	0.593(5685)	0.215(151)	0.087(1507)	non tumor-specific	nAS	yes
UN_AC004704.1_LS0004	chr4:111829050|111937522:-	AC004704.1	-	lncRNA gene	no	.	3.490	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012146.2_UP_LS0005	chr17:5030897|5031021:+	AC012146.2	-	pseudogene	no	.	2.980	0.461	0.000	0.04(380)	0.024(17)	0(0)	non tumor-specific	nAS	no
NXNL2_LS012	chr9:88571208|88575087:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	ENST00000375855.3	0.215	0.035	0.755	0.015(141)	0.011(8)	0.038(656)	non tumor-specific	exon_skip;mutex_exons	yes
ZNF329_LS008	chr19:58142661|58154428:-	ZNF329	zinc finger protein 329	protein coding gene	no	.;.	1.557	1.035	0.000	0.236(2265)	0.309(217)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
FAM197Y4_LS002	chrY:9482822|9484321:-	FAM197Y4	family with sequence similarity 197 Y-linked member 4	pseudogene	no	ENST00000616275.4	1.086	0.041	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	nAS	yes
UN_PAPLN_LS0010	chr14:73245235|73245524:-	PAPLN	papilin, proteoglycan like sulfated glycoprotein	protein coding gene	no	.	3.063	0.560	0.000	0.009(83)	0.019(13)	0(0)	non tumor-specific	nAS	no
AC021683.2_LS004	chr17:77560843|77560945:+	AC021683.2	-	lncRNA gene	no	ENST00000591283.1	1.771	0.540	1.317	0.196(1882)	0.217(152)	0.385(6689)	non tumor-specific	nAS	yes
GPBP1L1_LS021	chr1:45661225|45687983:-	GPBP1L1	GC-rich promoter binding protein 1 like 1	protein coding gene	no	ENST00000460859.1	1.904	1.643	1.641	0.712(6820)	0.815(572)	0.767(13328)	non tumor-specific	exon_skip	yes
CBLB_LS002	chr3:105670352|105671021:-	CBLB	Cbl proto-oncogene B	protein coding gene	yes	ENST00000645425.1;ENST00000642241.1	2.781	1.109	0.000	0.029(274)	0.041(29)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_COL9A2_LS0031	chr1:40306401|40307446:-	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	.	4.610	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SLC16A5_LS0017	chr17:75091601|75093589:+	SLC16A5	solute carrier family 16 member 5	protein coding gene	no	.	1.940	0.748	0.000	0.009(84)	0.026(18)	0(0)	non tumor-specific	alt_5prime	no
UN_BGN_LS0168	chrX:153508607|153508673:-	BGN	biglycan	protein coding gene	no	.	15.419	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL353743.1_LS0012	chr9:85807316|85815879:+	AL353743.1	-	pseudogene	no	.	1.380	0.356	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TMTC3_LS0010	chr12:88166582|88172652:+	TMTC3	transmembrane O-mannosyltransferase targeting cadherins 3	protein coding gene	no	.	1.195	0.089	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
RAVER1_LS008	chr19:10320951|10321048:-	RAVER1	ribonucleoprotein, PTB binding 1	protein coding gene	no	ENST00000617231.4;ENST00000293677.10;ENST00000592208.5;ENST00000611074.4;ENST00000585935.5	40.437	20.806	28.815	0.987(9452)	0.99(695)	0.979(17015)	non tumor-specific	alt_5prime;exon_skip	yes
PTCD3_LS017	chr2:86119044|86121479:+	PTCD3	pentatricopeptide repeat domain 3	protein coding gene	no	ENST00000254630.11	14.173	11.405	34.240	0.969(9286)	0.989(694)	0.978(17004)	non tumor-specific	exon_skip	yes
LINC01392_LS002	chr7:115123680|115126471:-	LINC01392	long intergenic non-protein coding RNA 1392	lncRNA gene	no	ENST00000419883.1	0.000	0.196	0.804	0(0)	0.001(1)	0(5)	non tumor-specific	nAS	yes
UN_TAZ_LS0014	chrX:154421250|154421400:-	TAZ	WW domain containing transcription regulator 1	protein coding gene	yes	.	1.066	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SIPA1L1_LS053	chr14:71724835|71730055:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000381232.7;ENST00000555818.5;ENST00000358550.6;ENST00000537413.5;ENST00000554874.5	39.319	24.160	48.017	0.992(9503)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRH_UP_LS0035	chr8:66397017|66428942:-	CRH	corticotropin releasing hormone	protein coding gene	no	.	1.067	0.081	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC103760.1_LS0005	chr8:86335761|86338266:-	AC103760.1	-	lncRNA gene	no	.	2.322	0.772	0.000	0.041(397)	0.06(42)	0(0)	non tumor-specific	nAS	no
KIAA2026_LS006	chr9:5923309|5924658:-	KIAA2026	KIAA2026	protein coding gene	no	ENST00000399933.7;ENST00000381461.6;ENST00000540714.1	11.345	8.544	9.739	0.904(8666)	0.95(667)	0.967(16813)	non tumor-specific	exon_skip	yes
AP003717.1_LS002	chr11:73964524|73964869:-	AP003717.1	-	lncRNA gene	no	ENST00000537019.5;ENST00000540886.1	0.081	0.044	0.781	0.009(87)	0.001(1)	0.011(194)	non tumor-specific	nAS	yes
DRG2_LS021	chr17:18100435|18100569:+	DRG2	developmentally regulated GTP binding protein 2	protein coding gene	no	ENST00000225729.7;ENST00000395726.8;ENST00000582314.5;ENST00000580055.5;ENST00000467099.6;ENST00000579224.5;ENST00000577450.5;ENST00000582528.5	59.413	34.628	58.174	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ASTN2_LS0018	chr9:116487500|116568741:-	ASTN2	astrotactin 2	protein coding gene	no	.	1.084	0.000	0.000	0.007(63)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PHLPP2_LS0005	chr16:71641523|71641685:+	PHLPP2	PH domain and leucine rich repeat protein phosphatase 2	protein coding gene	yes	.	5.055	1.497	0.000	0.007(67)	0.011(8)	0(0)	non tumor-specific	intron_retention	no
MDM2_LS006	chr12:68809292|68824363:+	MDM2	MDM2 proto-oncogene	protein coding gene	yes	ENST00000481186.5	0.028	0.019	0.651	0.348(3338)	0.35(246)	0.037(638)	non tumor-specific	exon_skip	yes
UN_BAZ2B_UP_LS0007	chr2:159635326|159670708:-	BAZ2B	bromodomain adjacent to zinc finger domain 2B	protein coding gene	no	.	1.067	0.492	0.000	0.015(143)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_LINC01091_LS0004	chr4:123661833|123664553:+	LINC01091	long intergenic non-protein coding RNA 1091	lncRNA gene	no	.	2.498	0.126	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
MVB12A_LS009	chr19:17413104|17413221:+	MVB12A	multivesicular body subunit 12A	protein coding gene	no	ENST00000600514.5	0.539	0.343	1.713	0.805(7711)	0.845(593)	0.683(11875)	non tumor-specific	exon_skip;intron_retention	yes
UN_UPK2_LS0022	chr11:118958378|118958415:-	UPK2	uroplakin 2	protein coding gene	no	.	4.085	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
WDR54_LS025	chr2:74425491|74425570:+	WDR54	WD repeat domain 54	protein coding gene	no	ENST00000348227.4;ENST00000465134.5;ENST00000480089.5;ENST00000468778.5;ENST00000469321.5;ENST00000482605.1	52.663	14.999	18.464	0.987(9460)	0.972(682)	0.973(16921)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LDLRAD3_LS0006	chr11:36001186|36036103:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	1.115	0.363	0.000	0.037(353)	0.048(34)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC006059.1_LS0001	chr3:42623812|42653994:-	AC006059.1	-	lncRNA gene	no	.	3.331	0.849	0.000	0.091(872)	0.06(42)	0(0)	non tumor-specific	nAS	no
UN_TMSB10P2_UP_LS0006	chrX:18104388|18121607:+	TMSB10P2	thymosin beta 10 pseudogene 2	pseudogene	no	.	0.973	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TMPRSS11E_LS005	chr4:68468946|68474723:+	TMPRSS11E	transmembrane serine protease 11E	protein coding gene	no	ENST00000510647.1	0.346	0.223	1.082	0.041(393)	0.044(31)	0.034(597)	non tumor-specific	exon_skip	yes
DIAPH2_LS026	chrX:97247841|97348118:+	DIAPH2	diaphanous related formin 2	protein coding gene	no	ENST00000355827.8;ENST00000373061.7;ENST00000373054.5	9.633	1.023	0.602	0.007(66)	0.006(4)	0.035(605)	non tumor-specific	nAS	yes
UN_C1QTNF12_LS0001	chr1:1243145|1243444:-	C1QTNF12	C1q and TNF related 12	protein coding gene	no	.	11.762	2.413	0.000	0.002(18)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_HIST1H3PS1_UP_LS0023	chr6:26414473|26452984:-	HIST1H3PS1	H3 clustered histone 9, pseudogene	pseudogene	no	.	6.026	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SLC16A1-AS1_LS004	chr1:112960575|112968035:+	SLC16A1-AS1	SLC16A1 antisense RNA 1	lncRNA gene	no	ENST00000428411.5;ENST00000420168.1	0.667	0.248	1.131	0.507(4856)	0.382(268)	0.554(9624)	non tumor-specific	nAS	yes
ZNF347_LS004	chr19:53148809|53153733:-	ZNF347	zinc finger protein 347	protein coding gene	no	.;.	0.975	0.148	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
HERC2P3_LS032	chr15:20463001|20483403:-	HERC2P3	hect domain and RLD 2 pseudogene 3	pseudogene	no	ENST00000414804.5	0.174	0.153	1.788	0.652(6249)	0.623(437)	0.723(12560)	non tumor-specific	nAS	yes
UN_ATP6V1G1P3_UP_LS0001	chr9:136673631|136714186:+	ATP6V1G1P3	ATPase H+ transporting V1 subunit G1 pseudogene 3	pseudogene	no	.	3.004	0.233	0.000	0.002(18)	0.009(6)	0(0)	non tumor-specific	nAS	no
IL12A-AS1_LS006	chr3:159998317|160009112:-	IL12A-AS1	IL12A antisense RNA 1	lncRNA gene	no	ENST00000462431.1	6.197	1.066	1.152	0.002(21)	0.014(10)	0.041(711)	non tumor-specific	nAS	yes
UN_AC083982.1_UP_LS0011	chr8:143159709|143170542:-	AC083982.1	-	pseudogene	no	.	1.808	0.824	0.000	0.034(327)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_NEDD4L_LS0016	chr18:58149559|58161777:+	NEDD4L	NEDD4 like E3 ubiquitin protein ligase	protein coding gene	yes	.	10.739	18.337	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
CSAD_LS006	chr12:53160319|53160763:-	CSAD	cysteine sulfinic acid decarboxylase	protein coding gene	no	ENST00000267085.8;ENST00000475890.5;ENST00000379843.7;ENST00000379850.7;ENST00000379846.5;ENST00000444623.5;ENST00000453446.6;ENST00000490923.5;ENST00000490589.5;ENST00000485004.5	17.881	11.623	83.668	0.98(9392)	0.987(693)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TENM4_LS046	chr11:79297543|79438962:-	TENM4	teneurin transmembrane protein 4	protein coding gene	no	ENST00000528688.5	0.188	0.056	0.731	0.063(599)	0.071(50)	0.063(1091)	non tumor-specific	nAS	yes
PFKM_LS046	chr12:48140871|48141311:+	PFKM	phosphofructokinase, muscle	protein coding gene	no	ENST00000550345.6;ENST00000550924.6;ENST00000340802.11;ENST00000549941.6;ENST00000547581.5;ENST00000642730.1;ENST00000359794.10;ENST00000551339.6;ENST00000546964.5;ENST00000551804.5;ENST00000547587.5;ENST00000312352.11;ENST00000546465.1;ENST00000547148.5;ENST00000552752.5	99.035	62.553	81.938	0.985(9434)	0.994(698)	0.978(17006)	non tumor-specific	alt_3prime	yes
PANK4_LS026	chr1:2521315|2526464:-	PANK4	pantothenate kinase 4 (inactive)	protein coding gene	no	ENST00000486396.1;ENST00000486396.1	6.212	4.036	0.715	0.645(6177)	0.709(498)	0.244(4236)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RIMS1_UP_LS0015	chr6:71701854|71702554:+	RIMS1	regulating synaptic membrane exocytosis 1	protein coding gene	no	.	3.482	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC068946.2_LS008	chr2:219213502|219213590:-	AC068946.2	-	protein coding gene	no	ENST00000446716.5	47.066	23.103	44.881	0.99(9481)	0.996(699)	0.979(17020)	non tumor-specific	nAS	yes
UN_FAM13A_LS0007	chr4:88732194|88737472:-	FAM13A	family with sequence similarity 13 member A	protein coding gene	no	.	7.399	0.770	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
FAM214A_LS002	chr15:52584944|52587056:-	FAM214A	family with sequence similarity 214 member A	protein coding gene	no	ENST00000534964.6	0.455	0.848	4.394	0.637(6103)	0.741(520)	0.891(15493)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LRPPRC_LS0029	chr2:43948515|43949602:-	LRPPRC	leucine rich pentatricopeptide repeat containing	protein coding gene	no	.	12.742	0.312	0.000	0.007(63)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
AC004997.1_LS019	chr22:30288776|30292773:-	AC004997.1	-	protein coding gene	no	ENST00000330168.9	0.048	0.058	0.793	0.394(3774)	0.392(275)	0.317(5513)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SPACA4_UP_LS0004	chr19:48581692|48605787:+	SPACA4	sperm acrosome associated 4	protein coding gene	no	.	3.057	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DHX9_LS003	chr1:182842677|182843294:+	DHX9	DExH-box helicase 9	protein coding gene	no	ENST00000367549.3;ENST00000483416.1	45.323	33.123	34.373	0.965(9244)	0.987(693)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DAZAP2_LS0021	chr12:51241036|51242337:-	DAZAP2	DAZ associated protein 2	protein coding gene	no	.	4.471	1.699	0.000	0.033(317)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_CACNA1C_LS0011	chr12:2054535|2115224:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	.	1.392	0.432	0.000	0.003(29)	0.02(14)	0(0)	non tumor-specific	nAS	no
TNNT3_LS021	chr11:1926709|1929068:+	TNNT3	troponin T3, fast skeletal type	protein coding gene	no	ENST00000492075.5	10.237	0.610	0.754	0.011(108)	0.011(8)	0.033(576)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ADAMTSL1_LS037	chr9:18906912|18908442:+	ADAMTSL1	ADAMTS like 1	protein coding gene	no	ENST00000380548.8;ENST00000380559.7;ENST00000380545.9;ENST00000542621.5;ENST00000388710.8	5.413	4.584	4.895	0.476(4558)	0.762(535)	0.766(13315)	non tumor-specific	intron_retention	yes
UN_CNOT6L_LS0004	chr4:77729081|77730250:-	CNOT6L	CCR4-NOT transcription complex subunit 6 like	protein coding gene	no	.	0.300	0.388	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
SMUG1_LS028	chr12:54183959|54188951:-	SMUG1	single-strand-selective monofunctional uracil-DNA glycosylase 1	protein coding gene	no	ENST00000508394.6;ENST00000243112.9;ENST00000514196.5;ENST00000503447.1;ENST00000508394.6;ENST00000243112.9;ENST00000514196.5;ENST00000503447.1	4.524	2.915	6.246	0.976(9348)	0.981(689)	0.968(16829)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GFPT1_LS022	chr2:69374113|69387065:-	GFPT1	glutamine--fructose-6-phosphate transaminase 1	protein coding gene	no	ENST00000357308.8;ENST00000361060.5;ENST00000494201.1	28.088	21.163	10.037	0.923(8844)	0.956(671)	0.948(16484)	non tumor-specific	alt_5prime;exon_skip	yes
FBH1_LS020	chr10:5915571|5916234:+	FBH1	F-box DNA helicase 1	protein coding gene	no	ENST00000397269.7;ENST00000362091.8;ENST00000379999.6	68.852	46.724	55.007	0.987(9455)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ATP11A_LS028	chr13:112858290|112860287:+	ATP11A	ATPase phospholipid transporting 11A	protein coding gene	no	.;.	3.090	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC5A10_LS0036	chr17:18978850|18979322:-	SLC5A10	solute carrier family 5 member 10	protein coding gene	no	.	1.864	0.550	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
GRSF1_LS007	chr4:70828036|70831539:-	GRSF1	G-rich RNA sequence binding factor 1	protein coding gene	no	ENST00000254799.10;ENST00000505068.5;ENST00000545193.5;ENST00000499044.6;ENST00000502323.5;ENST00000514161.5	147.245	85.240	100.103	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_AP1B1_LS0005	chr22:29327997|29328049:+	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	16.820	0.693	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
KIZ_LS024	chr20:21232830|21244245:+	KIZ	kizuna centrosomal protein	protein coding gene	no	ENST00000619574.4;ENST00000620891.4;ENST00000611685.4;ENST00000616848.4;ENST00000619189.4;ENST00000616679.4;ENST00000619179.4;ENST00000621366.1;ENST00000419359.5	45.417	33.381	30.608	0.991(9499)	0.997(700)	0.979(17014)	non tumor-specific	nAS	yes
UN_SCARB1_LS0087	chr12:124817707|124821359:-	SCARB1	scavenger receptor class B member 1	protein coding gene	no	.	1.865	0.585	0.000	0.002(20)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_EMC3_LS0002	chr3:10001395|10011023:-	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	.	0.803	0.152	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC012184.2_LS0194	chr16:70332984|70371390:+	AC012184.2	-	protein coding gene	no	.	25.729	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
FAM13A_LS036	chr4:88938241|89020460:-	FAM13A	family with sequence similarity 13 member A	protein coding gene	no	ENST00000511976.5;ENST00000512339.5	0.740	0.539	1.368	0.4(3829)	0.548(385)	0.62(10783)	non tumor-specific	exon_skip	yes
PEX5L-AS2_LS001	chr3:179898351|179901926:+	PEX5L-AS2	PEX5L antisense RNA 2	lncRNA gene	no	ENST00000462801.1	0.064	0.001	0.628	0.001(11)	0.001(1)	0.006(109)	non tumor-specific	nAS	yes
UN_WNT9A_UP_LS0026	chr1:227972477|227972907:-	WNT9A	Wnt family member 9A	protein coding gene	no	.	1.622	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
DPEP1_LS017	chr16:89637707|89637836:+	DPEP1	dipeptidase 1	protein coding gene	no	ENST00000421184.5;ENST00000393092.7;ENST00000261615.5;ENST00000564645.1	37.407	155.350	1.562	0.666(6383)	0.564(396)	0.463(8054)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TENM4_LS031	chr11:78903523|78962143:-	TENM4	teneurin transmembrane protein 4	protein coding gene	no	ENST00000533013.1	0.463	0.161	0.766	0.18(1723)	0.141(99)	0.141(2451)	non tumor-specific	exon_skip	yes
UN_DES_LS0060	chr2:219426055|219426079:-	DES	desmin	protein coding gene	no	.	2.041	10.996	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
CLYBL_LS012	chr13:99871062|99884977:+	CLYBL	citramalyl-CoA lyase	protein coding gene	no	ENST00000425186.2	0.018	0.005	0.677	0.253(2426)	0.443(311)	0.013(224)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NECAB3_LS0013	chr20:33657550|33657592:+	NECAB3	N-terminal EF-hand calcium binding protein 3	protein coding gene	no	.	4.495	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
HELT_LS005	chr4:185019843|185020273:+	HELT	helt bHLH transcription factor	protein coding gene	no	ENST00000515777.5;ENST00000338875.5	3.775	0.303	1.026	0.007(70)	0.105(74)	0.072(1257)	non tumor-specific	alt_3prime	yes
INTS9_LS015	chr8:28812461|28813492:-	INTS9	integrator complex subunit 9	protein coding gene	no	ENST00000523303.5;ENST00000521022.5;ENST00000416984.6;ENST00000521777.5;ENST00000522363.5;ENST00000520983.5;ENST00000524081.5;ENST00000523076.1	14.008	8.401	11.045	0.982(9410)	0.986(692)	0.975(16949)	non tumor-specific	exon_skip	yes
UN_DHX35_LS0032	chr20:39034317|39038479:+	DHX35	DEAH-box helicase 35	protein coding gene	no	.	2.045	0.307	0.000	0.009(83)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
UN_C7orf55-LUC7L2_LS0005	chr7:139341522|139344897:+	C7orf55-LUC7L2	FMC1-LUC7L2 readthrough	protein coding gene	no	.	1.470	0.612	0.000	0.022(209)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_TBC1D8_LS0006	chr2:101008271|101010929:-	TBC1D8	TBC1 domain family member 8	protein coding gene	no	.	5.941	0.596	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
LINC00683_LS001	chr18:76615537|76622757:+	LINC00683	long intergenic non-protein coding RNA 683	lncRNA gene	no	ENST00000579781.1	0.206	0.012	1.377	0.013(127)	0.017(12)	0.046(799)	non tumor-specific	nAS	yes
UN_SPTLC2_LS0031	chr14:77601718|77603865:+	SPTLC2	serine palmitoyltransferase long chain base subunit 2	protein coding gene	no	.	7.126	1.983	0.000	0.023(225)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_FOSL2_LS0089	chr2:28412809|28412853:-	FOSL2	FOS like 2, AP-1 transcription factor subunit	protein coding gene	no	.	9.282	3.092	0.000	0.005(51)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AKR7L_UP_LS0010	chr1:19284115|19304355:-	AKR7L	aldo-keto reductase family 7 like (gene/pseudogene)	pseudogene	no	.	21.706	11.054	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZMAT3_LS0009	chr3:179027812|179067483:-	ZMAT3	zinc finger matrin-type 3	protein coding gene	no	.	2.266	0.132	0.000	0.005(48)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
C12orf29_LS010	chr12:88043715|88045582:+	C12orf29	chromosome 12 open reading frame 29	protein coding gene	no	ENST00000548757.6;ENST00000549345.6;ENST00000356891.3;ENST00000550333.5;ENST00000552847.5;ENST00000453037.7;ENST00000547468.1	22.200	14.492	18.508	0.989(9478)	0.997(700)	0.976(16965)	non tumor-specific	exon_skip;intron_retention	yes
UN_JPX_LS0014	chrX:73944662|73999355:+	JPX	JPX transcript, XIST activator	lncRNA gene	no	.	0.672	0.008	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCDC112_UP_LS0001	chr5:115364413|115365123:-	CCDC112	coiled-coil domain containing 112	protein coding gene	no	.	2.721	0.192	0.000	0.018(172)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_MORF4L1_LS0016	chr15:78891013|78891485:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	.	94.250	12.697	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
CYP4F2_LS002	chr19:15879428|15879604:-	CYP4F2	cytochrome P450 family 4 subfamily F member 2	protein coding gene	no	ENST00000392846.7;ENST00000221700.10;ENST00000011989.11	14.923	62.649	1.375	0.168(1610)	0.35(246)	0.223(3872)	non tumor-specific	alt_3prime;exon_skip	yes
CATSPER2P1_LS003	chr15:43732695|43735430:-	CATSPER2P1	cation channel sperm associated 2 pseudogene 1	pseudogene	no	ENST00000439564.5	1.146	0.044	0.646	0.013(122)	0.006(4)	0.022(390)	non tumor-specific	nAS	yes
MRM1_LS003	chr17:36602352|36602553:+	MRM1	mitochondrial rRNA methyltransferase 1	protein coding gene	no	ENST00000614766.4	14.794	6.781	8.653	0.979(9379)	0.984(691)	0.973(16916)	non tumor-specific	alt_5prime;intron_retention	yes
ENOPH1_LS003	chr4:82448021|82451043:+	ENOPH1	enolase-phosphatase 1	protein coding gene	no	ENST00000273920.7;ENST00000509635.5	74.483	40.188	19.997	0.988(9468)	0.991(696)	0.977(16982)	non tumor-specific	alt_5prime;exon_skip	yes
GRAMD1A_LS002	chr19:34996291|35009119:+	GRAMD1A	GRAM domain containing 1A	protein coding gene	no	ENST00000599564.5	0.191	0.512	1.161	0.301(2882)	0.268(188)	0.444(7725)	non tumor-specific	nAS	yes
UN_INTS2_LS0034	chr17:61925573|61926352:-	INTS2	integrator complex subunit 2	protein coding gene	yes	.	1.776	0.206	0.000	0.015(139)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CHD7_LS005	chr8:60781050|60794986:+	CHD7	chromodomain helicase DNA binding protein 7	protein coding gene	no	ENST00000527900.1	0.330	0.111	0.701	0.13(1243)	0.104(73)	0.08(1398)	non tumor-specific	alt_5prime;exon_skip	yes
KIFC3_LS026	chr16:57771665|57772223:-	KIFC3	kinesin family member C3	protein coding gene	no	ENST00000569222.5	0.035	0.005	0.742	0.245(2347)	0.308(216)	0.254(4409)	non tumor-specific	alt_3prime	yes
STX17_LS013	chr9:99945850|99951060:+	STX17	syntaxin 17	protein coding gene	no	ENST00000525342.5	0.078	0.112	0.689	0.076(725)	0.114(80)	0.077(1346)	non tumor-specific	exon_skip	yes
ZDHHC19_LS019	chr3:196209515|196210616:-	ZDHHC19	zinc finger DHHC-type palmitoyltransferase 19	protein coding gene	no	ENST00000296326.7;ENST00000465519.5;ENST00000397544.6;ENST00000438232.5;ENST00000488508.1	3.626	0.000	0.779	0.001(6)	0(0)	0.077(1338)	non tumor-specific	nAS	yes
UN_AC004943.2_LS0029	chr16:72777720|72781728:+	AC004943.2	-	lncRNA gene	no	.	1.025	0.213	0.000	0.041(394)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_C6orf48_UP_LS0302	chr6:31817346|31829430:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	96.185	34.898	0.000	0.054(513)	0.056(39)	0(0)	non tumor-specific	nAS	no
GAN_LS008	chr16:81363943|81364974:+	GAN	gigaxonin	protein coding gene	no	ENST00000568107.3;ENST00000648349.1;ENST00000648994.1;ENST00000650388.1	3.367	2.067	1.609	0.553(5300)	0.574(403)	0.729(12669)	non tumor-specific	nAS	yes
CACTIN-AS1_LS002	chr19:3611265|3611766:+	CACTIN-AS1	CACTIN antisense RNA 1	lncRNA gene	no	ENST00000592274.1	0.406	0.263	0.912	0.127(1218)	0.123(86)	0.408(7098)	non tumor-specific	nAS	yes
UN_FYCO1_LS0025	chr3:45962392|45965033:-	FYCO1	FYVE and coiled-coil domain autophagy adaptor 1	protein coding gene	no	.	3.239	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
TMBIM6_LS043	chr12:49758762|49759221:+	TMBIM6	transmembrane BAX inhibitor motif containing 6	protein coding gene	no	ENST00000552699.5;ENST00000267115.9;ENST00000549385.5;ENST00000423828.5;ENST00000552370.5;ENST00000395006.8;ENST00000547798.1;ENST00000547013.1	1176.944	834.266	399.245	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MRPL48_LS026	chr11:73843367|73844807:+	MRPL48	mitochondrial ribosomal protein L48	protein coding gene	no	ENST00000497094.6;ENST00000314282.7	0.091	0.058	5.196	0.973(9322)	0.98(688)	0.957(16639)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PPP1R14C_LS0017	chr6:150216856|150237720:+	PPP1R14C	protein phosphatase 1 regulatory inhibitor subunit 14C	protein coding gene	no	.	3.284	0.723	0.000	0.012(114)	0.01(7)	0(0)	non tumor-specific	nAS	no
ZNF189_LS002	chr9:101399189|101399516:+	ZNF189	zinc finger protein 189	protein coding gene	no	.;.	0.909	0.644	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CDK12_LS037	chr17:39557058|39564760:+	CDK12	cyclin dependent kinase 12	protein coding gene	no	ENST00000559545.5;ENST00000559545.5	0.108	0.081	1.340	0.506(4846)	0.516(362)	0.701(12186)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_MAP2K6_LS0035	chr17:69517297|69517500:+	MAP2K6	mitogen-activated protein kinase kinase 6	protein coding gene	no	.	3.007	0.433	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC25A13_LS006	chr7:96146696|96170045:-	SLC25A13	solute carrier family 25 member 13	protein coding gene	no	ENST00000265631.9;ENST00000416240.6	43.496	29.987	10.766	0.986(9451)	0.993(697)	0.966(16798)	non tumor-specific	exon_skip	yes
UN_EMC3_LS0079	chr3:9997389|9998455:+	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	.	1.007	0.014	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	nAS	no
VSX2_LS002	chr14:74241266|74245165:+	VSX2	visual system homeobox 2	protein coding gene	no	ENST00000261980.2	16.115	0.081	0.764	0.01(98)	0.003(2)	0.016(274)	non tumor-specific	nAS	yes
LINC00205_LS002	chr21:45288244|45289351:+	LINC00205	long intergenic non-protein coding RNA 205	no	no	ENST00000454115.6	0.867	0.647	1.073	0.612(5863)	0.574(403)	0.462(8031)	non tumor-specific	nAS	yes
UN_ADAMTS15_LS0012	chr11:130458465|130461489:+	ADAMTS15	ADAM metallopeptidase with thrombospondin type 1 motif 15	protein coding gene	no	.	2.593	0.348	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_UBC_LS0392	chr12:124912605|124912872:+	UBC	ubiquitin C	protein coding gene	no	.	43.901	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CD70_LS0018	chr19:6593688|6603941:-	CD70	CD70 molecule	protein coding gene	no	.	1.478	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CPEB1_LS033	chr15:82640865|82641625:-	CPEB1	cytoplasmic polyadenylation element binding protein 1	protein coding gene	no	ENST00000563519.1	1.005	0.000	0.762	0.004(43)	0(0)	0.071(1229)	non tumor-specific	exon_skip	yes
CABLES1_LS009	chr18:23188909|23257895:+	CABLES1	Cdk5 and Abl enzyme substrate 1	protein coding gene	yes	ENST00000585061.1	0.392	0.162	0.683	0.213(2039)	0.316(222)	0.01(168)	non tumor-specific	nAS	yes
UN_NDUFV1_LS0006	chr11:67608600|67609497:-	NDUFV1	NADH:ubiquinone oxidoreductase core subunit V1	protein coding gene	no	.	0.615	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CACNG8_UP_LS0003	chr19:53945837|53951492:+	CACNG8	calcium voltage-gated channel auxiliary subunit gamma 8	protein coding gene	no	.	2.893	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLIP2_LS0008	chr7:74317667|74329594:+	CLIP2	CAP-Gly domain containing linker protein 2	protein coding gene	no	.	1.945	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
AMHR2_LS008	chr12:53425487|53425686:+	AMHR2	anti-Mullerian hormone receptor type 2	protein coding gene	no	ENST00000552233.5;ENST00000552233.5	0.497	0.415	1.026	0.03(287)	0.017(12)	0.074(1279)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RFC3_LS0004	chr13:33820468|33821132:+	RFC3	replication factor C subunit 3	protein coding gene	yes	.	1.724	0.373	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ACBD4_LS0015	chr17:45137988|45139053:+	ACBD4	acyl-CoA binding domain containing 4	protein coding gene	no	.	3.509	0.331	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GRIFIN_LS001	chr7:2474885|2475141:-	GRIFIN	galectin-related inter-fiber protein	protein coding gene	no	ENST00000614228.1	6.292	0.000	0.978	0(3)	0(0)	0.036(621)	non tumor-specific	nAS	yes
CWF19L2_LS004	chr11:107336713|107345414:-	CWF19L2	CWF19 like cell cycle control factor 2	protein coding gene	no	ENST00000431778.5	0.089	0.096	0.841	0.353(3381)	0.506(355)	0.399(6927)	non tumor-specific	exon_skip	yes
CLEC18B_LS011	chr16:74412246|74412773:-	CLEC18B	C-type lectin domain family 18 member B	protein coding gene	no	ENST00000617101.4;ENST00000619275.4;ENST00000339953.9;ENST00000620745.1;ENST00000564842.1	2.697	3.672	1.074	0.627(6009)	0.546(383)	0.288(5007)	non tumor-specific	alt_3prime;exon_skip	yes
AL133216.2_LS014	chr10:38437206|38437544:+	AL133216.2	-	pseudogene	no	ENST00000622550.2	2.639	0.792	1.609	0.094(898)	0.081(57)	0.611(10615)	non tumor-specific	exon_skip	yes
GALC_LS009	chr14:87947878|87949845:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000555000.5;ENST00000261304.6;ENST00000544807.6;ENST00000393569.6;ENST00000393568.8;ENST00000555179.1;ENST00000557316.5	19.853	17.647	16.640	0.937(8979)	0.99(695)	0.977(16990)	non tumor-specific	alt_3prime;alt_5prime	yes
SLC27A6_LS002	chr5:128845700|128853974:+	SLC27A6	solute carrier family 27 member 6	protein coding gene	no	ENST00000508645.5	1.586	0.000	0.690	0.005(45)	0(0)	0.024(419)	non tumor-specific	exon_skip	yes
UN_BCL2L2-PABPN1_LS0011	chr14:23308979|23309007:+	BCL2L2-PABPN1	BCL2L2-PABPN1 readthrough	protein coding gene	no	.	5.899	2.960	0.000	0.004(35)	0.01(7)	0(0)	non tumor-specific	nAS	no
TMEM232_LS024	chr5:110667364|110667695:-	TMEM232	transmembrane protein 232	protein coding gene	no	ENST00000511883.6	0.478	0.088	0.820	0.024(228)	0.021(15)	0.147(2555)	non tumor-specific	exon_skip	yes
KIAA0408_LS005	chr6:127450352|127451282:-	KIAA0408	KIAA0408	protein coding gene	no	ENST00000487331.2	0.479	0.270	1.456	0.18(1727)	0.377(265)	0.478(8309)	non tumor-specific	exon_skip	yes
UN_FAM53C_LS0011	chr5:138338880|138341184:+	FAM53C	family with sequence similarity 53 member C	protein coding gene	no	.	2.262	0.108	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_AL031280.1_UP_LS0002	chr1:25817328|25970700:-	AL031280.1	-	lncRNA gene	no	.	35.949	2.541	0.000	0.011(109)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FP671120.1_LS0177	chr21:8214686|8224013:-	FP671120.1	-	lncRNA gene	no	.	4.155	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TOP2B_LS005	chr3:25606122|25607171:-	TOP2B	DNA topoisomerase II beta	protein coding gene	no	ENST00000264331.8;ENST00000413971.5;ENST00000435706.6	178.043	101.327	105.530	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
GPT2_LS009	chr16:46897737|46900682:+	GPT2	glutamic--pyruvic transaminase 2	protein coding gene	no	ENST00000340124.8;ENST00000562132.5;ENST00000440783.2	23.019	24.773	17.972	0.969(9285)	0.974(684)	0.951(16536)	non tumor-specific	exon_skip	yes
UN_ZNF512_LS0024	chr2:27617571|27619650:+	ZNF512	zinc finger protein 512	protein coding gene	no	.	3.404	1.212	0.000	0.116(1108)	0.053(37)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PPFIBP1_LS049	chr12:27691928|27692591:+	PPFIBP1	PPFIA binding protein 1	protein coding gene	no	ENST00000537927.5;ENST00000318304.12;ENST00000542629.5;ENST00000228425.10;ENST00000539326.1	46.805	38.698	57.953	0.986(9443)	0.997(700)	0.957(16632)	non tumor-specific	alt_5prime	yes
TMED1_LS001	chr19:10833213|10834819:-	TMED1	transmembrane p24 trafficking protein 1	protein coding gene	no	ENST00000586835.1	0.032	0.038	0.631	0.05(479)	0.043(30)	0.02(355)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CASC15_LS0146	chr6:22297227|22302760:-	CASC15	cancer susceptibility 15	lncRNA gene	no	.	2.128	0.094	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP149_UP_LS0006	chr3:180563985|180566008:-	RNA5SP149	RNA, 5S ribosomal pseudogene 149	no	no	.	2.245	0.408	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
KLK4_LS010	chr19:50908495|50908579:-	KLK4	kallikrein related peptidase 4	protein coding gene	no	ENST00000324041.5;ENST00000602148.1	34.410	20.156	1.473	0.183(1756)	0.212(149)	0.303(5261)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
OPALIN_LS005	chr10:96349826|96358894:-	OPALIN	oligodendrocytic myelin paranodal and inner loop protein	protein coding gene	no	ENST00000393871.5	0.400	0.226	3.260	0.034(322)	0.007(5)	0.11(1910)	non tumor-specific	exon_skip	yes
UN_RTEL1-TNFRSF6B_LS0104	chr20:63697191|63698280:+	RTEL1-TNFRSF6B	RTEL1-TNFRSF6B readthrough (NMD candidate)	protein coding gene	no	.	8.068	0.354	0.000	0.013(120)	0.006(4)	0(0)	non tumor-specific	nAS	no
SORL1_LS041	chr11:121605239|121605402:+	SORL1	sortilin related receptor 1	protein coding gene	no	ENST00000260197.11;ENST00000525532.5;ENST00000532694.5;ENST00000534286.5;ENST00000527934.1	27.426	23.134	5.664	0.878(8412)	0.962(675)	0.88(15298)	non tumor-specific	nAS	yes
UN_OBP2A_LS0007	chr9:135549331|135549832:+	OBP2A	odorant binding protein 2A	protein coding gene	no	.	3.604	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SLC4A11_LS004	chr20:3228707|3228838:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	ENST00000380056.7;ENST00000380059.7;ENST00000642402.1;ENST00000644692.1;ENST00000644011.1;ENST00000647296.1;ENST00000474451.5;ENST00000539553.7	18.805	11.180	4.869	0.762(7305)	0.708(497)	0.826(14352)	non tumor-specific	nAS	yes
NIPA1_LS008	chr15:22813714|22820313:+	NIPA1	NIPA magnesium transporter 1	protein coding gene	no	ENST00000559448.5	0.218	0.144	0.668	0.078(748)	0.088(62)	0.062(1081)	non tumor-specific	nAS	yes
MALT1_LS028	chr18:58735329|58737768:+	MALT1	MALT1 paracaspase	protein coding gene	yes	ENST00000649756.1	9.278	0.349	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KIZ_LS016	chr20:21205584|21214535:+	KIZ	kizuna centrosomal protein	protein coding gene	no	ENST00000619574.4;ENST00000620891.4;ENST00000611685.4;ENST00000616848.4;ENST00000619189.4;ENST00000616679.4;ENST00000619179.4	31.190	24.679	18.102	0.99(9483)	0.996(699)	0.978(17000)	non tumor-specific	nAS	yes
SPAG1_LS011	chr8:100191496|100194112:+	SPAG1	sperm associated antigen 1	protein coding gene	no	ENST00000520643.5;ENST00000251809.4;ENST00000520508.5;ENST00000388798.6	4.011	3.042	2.193	0.63(6034)	0.828(581)	0.773(13439)	non tumor-specific	nAS	yes
UN_CARTPT_UP_LS0009	chr5:71717720|71718516:+	CARTPT	CART prepropeptide	protein coding gene	no	.	1.764	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAL_LS0007	chr2:95029316|95047959:+	MAL	myocardin related transcription factor A	protein coding gene	yes	.	1.132	0.051	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP5F1A_LS007	chr18:46087064|46091765:-	ATP5F1A	ATP synthase F1 subunit alpha	protein coding gene	no	ENST00000592364.5	2.561	2.024	7.370	0.953(9133)	0.991(696)	0.96(16694)	non tumor-specific	nAS	yes
UN_HAGLR_LS0011	chr2:176175263|176175355:+	HAGLR	HOXD antisense growth-associated long non-coding RNA	lncRNA gene	no	.	0.977	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CMPK1_LS0023	chr1:47368615|47371063:+	CMPK1	cytidine/uridine monophosphate kinase 1	protein coding gene	no	.	0.931	0.103	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_IQCE_LS0008	chr7:2559520|2565606:+	IQCE	IQ motif containing E	protein coding gene	no	.	3.619	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EPN1_LS0025	chr19:55676619|55677046:+	EPN1	epsin 1	protein coding gene	no	.	1.774	0.031	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
TFG_LS013	chr3:100728858|100732508:+	TFG	trafficking from ER to golgi regulator	protein coding gene	yes	ENST00000620299.4;ENST00000418917.6;ENST00000490574.5;ENST00000240851.8;ENST00000476228.5;ENST00000463568.5;ENST00000487505.5;ENST00000615993.1;ENST00000620299.4;ENST00000418917.6;ENST00000490574.5;ENST00000240851.8;ENST00000476228.5;ENST00000463568.5;ENST00000487505.5;ENST00000615993.1	175.713	96.989	101.286	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PAM_LS020	chr5:102914021|102924957:+	PAM	peptidylglycine alpha-amidating monooxygenase	protein coding gene	no	ENST00000502472.5;ENST00000438793.7;ENST00000346918.6;ENST00000345721.6;ENST00000348126.6;ENST00000304400.11;ENST00000455264.6;ENST00000509636.5;ENST00000506260.1	43.230	40.454	56.777	0.955(9150)	0.976(685)	0.977(16984)	non tumor-specific	exon_skip	yes
UN_C5AR1_LS0004	chr19:47290061|47296600:+	C5AR1	complement C5a receptor 1	protein coding gene	no	.	2.198	0.034	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DNASE1L2_LS001	chr16:2236560|2236778:+	DNASE1L2	deoxyribonuclease 1 like 2	protein coding gene	no	ENST00000613572.4;ENST00000320700.9	0.316	0.147	1.199	0.115(1103)	0.053(37)	0.238(4134)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC009948.1_LS002	chr2:178414113|178418511:+	AC009948.1	-	lncRNA gene	no	ENST00000442036.1	0.007	0.010	0.683	0.13(1243)	0.15(105)	0.138(2404)	non tumor-specific	nAS	yes
ASIC3_LS018	chr7:151052474|151052574:+	ASIC3	acid sensing ion channel subunit 3	protein coding gene	no	ENST00000377904.8;ENST00000349064.9;ENST00000468325.5	1.672	0.700	5.898	0.42(4024)	0.15(105)	0.948(16482)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RNF111_LS011	chr15:59076215|59080936:+	RNF111	ring finger protein 111	protein coding gene	yes	ENST00000348370.8;ENST00000559209.5;ENST00000557998.5;ENST00000561186.5	18.826	13.791	14.564	0.897(8595)	0.97(681)	0.977(16981)	non tumor-specific	nAS	yes
LEMD1_LS015	chr1:205420574|205455917:-	LEMD1	LEM domain containing 1	protein coding gene	no	ENST00000495594.2	0.424	0.108	1.859	0.154(1475)	0.021(15)	0.084(1468)	non tumor-specific	exon_skip	yes
UN_MTCH1_LS0085	chr6:36968950|36970444:+	MTCH1	mitochondrial carrier 1	protein coding gene	no	.	0.604	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
PZP_LS044	chr12:9202684|9203768:-	PZP	PZP alpha-2-macroglobulin like	protein coding gene	no	ENST00000261336.6;ENST00000535230.5	2.879	2.852	1.711	0.018(176)	0.115(81)	0.045(778)	non tumor-specific	nAS	yes
SLC11A2_LS003	chr12:50981803|50988300:-	SLC11A2	solute carrier family 11 member 2	protein coding gene	no	ENST00000643884.1	7.670	3.895	0.000	0.111(1064)	0.15(105)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KLHL2_LS0053	chr4:165314166|165317829:+	KLHL2	kelch like family member 2	protein coding gene	no	.	2.965	0.607	0.000	0.003(33)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
ANAPC5_LS033	chr12:121335723|121337291:-	ANAPC5	anaphase promoting complex subunit 5	protein coding gene	no	ENST00000539079.5;ENST00000441917.6;ENST00000534976.5;ENST00000541887.5;ENST00000261819.7;ENST00000545218.5;ENST00000535472.5;ENST00000539612.5;ENST00000541652.5;ENST00000544442.5	82.717	47.121	95.930	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_TBX6_LS0003	chr16:30089306|30090758:-	TBX6	T-box transcription factor 6	protein coding gene	no	.	1.556	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
GDA_LS033	chr9:72250841|72253238:+	GDA	solute carrier family 25 member 16	protein coding gene	no	ENST00000376986.5	1.546	0.358	1.540	0.065(620)	0.113(79)	0.165(2862)	non tumor-specific	exon_skip	yes
HSPBAP1_LS003	chr3:122752674|122755260:-	HSPBAP1	HSPB1 associated protein 1	protein coding gene	no	ENST00000306103.2	10.816	6.069	7.525	0.974(9334)	0.981(689)	0.97(16868)	non tumor-specific	exon_skip	yes
UN_EEF1A1P5_LS0255	chr9:133020241|133020419:+	EEF1A1P5	eukaryotic translation elongation factor 1 alpha 1 pseudogene 5	pseudogene	no	.	267.015	328.391	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERFE_LS004	chr2:238163999|238164075:+	ERFE	erythroferrone	protein coding gene	no	ENST00000486834.1;ENST00000546354.5	1.468	0.195	0.918	0.221(2117)	0.074(52)	0.254(4407)	non tumor-specific	exon_skip	yes
UN_MDFIC_LS0024	chr7:114979781|115014411:+	MDFIC	MyoD family inhibitor domain containing	protein coding gene	no	.	1.932	0.199	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_FOXN3_LS0005	chr14:89157827|89158624:+	FOXN3	forkhead box N3	protein coding gene	no	.	1.801	1.706	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MIR4537_UP_LS0011	chr14:105863221|105865431:-	MIR4537	microRNA 4537	small non-coding RNA gene	no	.	15.726	0.603	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1113P_UP_LS0005	chr6:43450324|43451896:+	RNU6-1113P	RNA, U6 small nuclear 1113, pseudogene	small non-coding RNA gene	no	.	2.462	0.801	0.000	0.125(1198)	0.08(56)	0(0)	non tumor-specific	exon_skip	no
CU633906.2_LS006	chr21:6322697|6356688:+	CU633906.2	-	lncRNA gene	no	ENST00000623738.3	0.207	0.491	0.666	0.345(3305)	0.322(226)	0.019(337)	non tumor-specific	nAS	yes
UN_C14orf119_UP_LS0003	chr14:23058042|23062159:+	C14orf119	chromosome 14 open reading frame 119	protein coding gene	no	.	1.900	0.056	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLDND1_LS018	chr3:98521437|98522849:-	CLDND1	claudin domain containing 1	protein coding gene	no	ENST00000508902.5	0.096	0.139	1.707	0.87(8339)	0.915(642)	0.79(13733)	non tumor-specific	nAS	yes
UN_CTTN_LS0001	chr11:70398614|70402839:+	CTTN	cortactin	protein coding gene	yes	.	3.004	0.654	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC005837.2_LS001	chr17:76733215|76738282:+	AC005837.2	-	protein coding gene	no	ENST00000587459.1	0.095	0.037	0.672	0.278(2660)	0.279(196)	0.015(269)	non tumor-specific	nAS	yes
UN_BMS1_LS0040	chr10:42820647|42820934:+	BMS1	BMS1 ribosome biogenesis factor	protein coding gene	no	.	2.963	0.180	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_CRMP1_LS0168	chr4:5818254|5828519:+	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	1.585	0.834	0.000	0.146(1397)	0.158(111)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_MAP6_LS0026	chr11:75587681|75587715:-	MAP6	microtubule associated protein 6	protein coding gene	no	.	16.836	10.343	0.000	0.014(138)	0.019(13)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
EHBP1_LS002	chr2:62674083|62747395:+	EHBP1	EH domain binding protein 1	protein coding gene	no	ENST00000426940.5	0.001	0.000	0.672	0.174(1671)	0.232(163)	0.01(168)	non tumor-specific	nAS	yes
NAV2_LS015	chr11:19939773|19946401:+	NAV2	neuron navigator 2	protein coding gene	no	ENST00000360655.8;ENST00000396085.5;ENST00000540292.5;ENST00000527559.6;ENST00000349880.8;ENST00000396087.7	5.510	3.176	3.846	0.622(5964)	0.734(515)	0.833(14481)	non tumor-specific	nAS	yes
UN_CBWD5_LS0027	chr9:65715164|65720041:+	CBWD5	COBW domain containing 5	protein coding gene	no	.	3.623	0.361	0.000	0.166(1588)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_NLRC5_LS0021	chr16:57025955|57026241:-	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	.	3.064	1.043	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
POC1B-GALNT4_LS002	chr12:89524440|89525120:-	POC1B-GALNT4	POC1B-GALNT4 readthrough	protein coding gene	no	ENST00000548729.5	0.352	0.264	0.729	0.776(7439)	0.85(597)	0.273(4747)	non tumor-specific	alt_3prime	yes
PATL2_LS023	chr15:44674411|44676475:-	PATL2	PAT1 homolog 2	protein coding gene	no	ENST00000560780.1	0.029	0.038	0.721	0.012(118)	0.004(3)	0.138(2395)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CTBP1-DT_LS0018	chr4:1251436|1251459:-	CTBP1-DT	CTBP1 divergent transcript	lncRNA gene	no	.	2.456	0.102	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNA5-8SN2_UP_LS0050	chr21:8214155|8252230:+	RNA5-8SN2	RNA, 5.8S ribosomal N2	small non-coding RNA gene	no	.	34.612	0.282	0.000	0.007(65)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF438_LS0028	chr10:30909015|30984369:-	ZNF438	zinc finger protein 438	protein coding gene	no	.	1.352	0.073	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SCML1_LS0011	chrX:17745539|17746015:+	SCML1	Scm polycomb group protein like 1	protein coding gene	no	.	2.221	0.420	0.000	0.014(136)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
CD82_LS010	chr11:44566330|44587475:+	CD82	CD82 molecule	protein coding gene	yes	ENST00000532544.5	0.072	0.108	0.915	0.412(3948)	0.406(285)	0.301(5234)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_CPO_UP_LS0010	chr2:206881891|206925922:+	CPO	coproporphyrinogen oxidase	protein coding gene	no	.	1.621	0.770	0.000	0.012(114)	0.023(16)	0(0)	non tumor-specific	nAS	no
XRCC3_LS021	chr14:103711567|103712875:-	XRCC3	X-ray repair cross complementing 3	protein coding gene	no	ENST00000554913.5;ENST00000555055.5;ENST00000557439.5;ENST00000556980.5;ENST00000554170.1	2.882	0.679	2.928	0.808(7742)	0.631(443)	0.885(15378)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GRIPAP1_LS0008	chrX:48980855|48981215:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	.	0.274	0.028	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MAPRE2_LS009	chr18:35041661|35070195:+	MAPRE2	microtubule associated protein RP/EB family member 2	protein coding gene	no	ENST00000300249.9;ENST00000588910.5;ENST00000585592.1	18.346	16.106	22.865	0.966(9253)	0.99(695)	0.978(16994)	non tumor-specific	alt_5prime;exon_skip	yes
KIAA0408_LS007	chr6:127451317|127453847:-	KIAA0408	KIAA0408	protein coding gene	no	ENST00000487331.2	0.381	0.473	1.402	0.172(1644)	0.365(256)	0.46(8002)	non tumor-specific	exon_skip	yes
UN_AC011330.1_UP_LS0005	chr15:43684456|43684634:-	AC011330.1	-	pseudogene	no	.	1.098	0.153	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FP671120.1_LS0331	chr21:8218649|8218717:-	FP671120.1	-	lncRNA gene	no	.	107.074	124.530	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EIF5A_LS0059	chr17:7311433|7312026:-	EIF5A	eukaryotic translation initiation factor 5A	protein coding gene	no	.	13.576	0.068	0.000	0.006(57)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TACC2_LS0018	chr10:122084024|122084076:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	.	5.827	2.807	0.000	0.009(85)	0.02(14)	0(0)	non tumor-specific	intron_retention	no
SAT1_LS018	chrX:23785560|23785686:+	SAT1	solute carrier family 38 member 1	protein coding gene	no	ENST00000379254.5;ENST00000379270.4;ENST00000489394.5;ENST00000463236.5;ENST00000474223.1;ENST00000462639.1	1266.295	756.317	774.347	0.987(9458)	0.991(696)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NBPF1_LS0030	chr1:16590001|16590113:-	NBPF1	NBPF member 1	protein coding gene	no	.	0.988	0.074	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
AL138889.1_LS002	chr6:33914211|33914726:+	AL138889.1	-	lncRNA gene	no	ENST00000530000.1	0.117	0.000	0.672	0.001(9)	0(0)	0.002(29)	non tumor-specific	nAS	yes
UN_AC091729.3_LS0007	chr7:1160623|1162769:+	AC091729.3	-	lncRNA gene	no	.	0.721	0.122	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
SPAG17_LS044	chr1:118066899|118073854:-	SPAG17	sperm associated antigen 17	protein coding gene	no	ENST00000336338.9	1.518	1.167	1.065	0.079(760)	0.164(115)	0.15(2604)	non tumor-specific	exon_skip	yes
UN_SLC5A10_LS0037	chr17:18978850|18979514:-	SLC5A10	solute carrier family 5 member 10	protein coding gene	no	.	2.749	1.305	0.000	0.041(394)	0.038(27)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
AL356747.1_LS002	chr6:4718594|4724411:-	AL356747.1	-	lncRNA gene	no	ENST00000643972.1	11.267	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_MKRN1_LS0046	chr7:140459936|140465391:-	MKRN1	makorin ring finger protein 1	protein coding gene	no	.	4.085	1.895	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
GABBR2_LS017	chr9:98480997|98495966:-	GABBR2	gamma-aminobutyric acid type B receptor subunit 2	protein coding gene	no	ENST00000634919.1	0.537	0.000	0.700	0(1)	0(0)	0.003(54)	non tumor-specific	nAS	yes
COX6B1_LS005	chr19:35651349|35658594:+	COX6B1	cytochrome c oxidase subunit 6B1	protein coding gene	no	ENST00000590618.1	11.212	2.063	5.568	0.863(8267)	0.821(576)	0.968(16832)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC007842.1_UP_LS0001	chr19:40028110|40029624:-	AC007842.1	-	pseudogene	no	.	1.008	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC092162.2_LS0029	chr2:176787495|176789219:+	AC092162.2	-	lncRNA gene	no	.	2.376	0.309	0.000	0.018(172)	0.01(7)	0(0)	non tumor-specific	nAS	no
TH_LS001	chr11:2164392|2165232:-	TH	tyrosine hydroxylase	protein coding gene	no	ENST00000381178.5;ENST00000381175.5;ENST00000333684.9;ENST00000352909.7	256.545	11.324	1.589	0.181(1738)	0.083(58)	0.481(8355)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PDIA3P1_LS0009	chr1:147174585|147177008:+	PDIA3P1	protein disulfide isomerase family A member 3 pseudogene 1	pseudogene	no	.	1.498	0.264	0.000	0.005(51)	0.006(4)	0(0)	non tumor-specific	nAS	no
PLS3_LS027	chrX:115646186|115646402:+	PLS3	plastin 3	protein coding gene	no	ENST00000355899.7;ENST00000289290.7;ENST00000481823.5;ENST00000539310.5;ENST00000420625.6;ENST00000497870.1	176.474	142.292	153.794	0.981(9395)	0.997(700)	0.968(16829)	non tumor-specific	nAS	yes
UN_DNAH8_UP_LS0003	chr6:38654667|38664034:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	.	2.029	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CABIN1_LS0049	chr22:24085151|24087428:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	0.937	0.187	0.000	0.005(45)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
GIGYF1_LS005	chr7:100682482|100682590:-	GIGYF1	GRB10 interacting GYF protein 1	protein coding gene	no	ENST00000275732.5;ENST00000646601.1	31.219	14.806	56.001	0.988(9464)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL390778.2_UP_LS0038	chr9:135444326|135456607:-	AL390778.2	-	lncRNA gene	no	.	0.774	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HPD_LS0017	chr12:121847210|121847999:+	HPD	4-hydroxyphenylpyruvate dioxygenase	protein coding gene	no	.	2.589	0.268	0.000	0.021(203)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_AC079598.4_UP_LS0010	chr12:87430510|87440309:+	AC079598.4	-	pseudogene	no	.	3.581	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
PI4KA_LS025	chr22:20721418|20726488:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000477245.5	43.057	44.814	69.695	0.991(9493)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SCMH1_LS038	chr1:41152741|41159725:-	SCMH1	Scm polycomb group protein homolog 1	protein coding gene	no	ENST00000326197.11	3.630	2.896	5.787	0.856(8203)	0.906(636)	0.938(16299)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PHBP7_UP_LS0006	chr9:85849543|85872419:+	PHBP7	prohibitin pseudogene 7	pseudogene	no	.	2.611	0.604	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PTPRJ_LS0072	chr11:48110856|48112747:+	PTPRJ	protein tyrosine phosphatase receptor type J	protein coding gene	yes	.	0.953	0.075	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MCM3_UP_LS0011	chr6:52576901|52577219:-	MCM3	minichromosome maintenance complex component 3	protein coding gene	no	.	1.071	0.239	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
POLRMT_LS023	chr19:630168|632834:-	POLRMT	RNA polymerase mitochondrial	protein coding gene	no	ENST00000588649.6;ENST00000592863.2	29.159	17.348	25.660	0.98(9393)	0.991(696)	0.979(17010)	non tumor-specific	exon_skip	yes
CPED1_LS029	chr7:121266808|121267215:+	CPED1	cadherin like and PC-esterase domain containing 1	protein coding gene	no	ENST00000310396.9	7.740	17.129	10.706	0.624(5975)	0.953(669)	0.87(15127)	non tumor-specific	exon_skip	yes
SYBU_LS018	chr8:109642947|109644636:-	SYBU	syntabulin	protein coding gene	no	ENST00000424158.6	0.233	0.146	0.684	0.001(8)	0.001(1)	0.065(1122)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COL18A1_LS0002	chr21:45405473|45455512:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	1.425	0.707	0.000	0.003(32)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
EFHC1_LS001	chr6:52362249|52423946:+	EFHC1	EF-hand domain containing 1	protein coding gene	no	ENST00000637849.1;ENST00000635984.1;ENST00000635760.1;ENST00000491749.2	2.527	0.000	0.802	0(4)	0(0)	0.107(1856)	non tumor-specific	nAS	yes
GDPD5_LS045	chr11:75517426|75525210:-	GDPD5	glycerophosphodiester phosphodiesterase domain containing 5	protein coding gene	no	ENST00000529095.1	1.341	0.112	0.828	0.004(35)	0.009(6)	0.311(5400)	non tumor-specific	nAS	yes
UN_SIPA1_LS0016	chr11:65641356|65641409:-	SIPA1	signal-induced proliferation-associated 1	protein coding gene	no	.	2.982	0.273	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA6_LS0074	chr1:204274809|204288101:-	PLEKHA6	pleckstrin homology domain containing A6	protein coding gene	no	.	1.320	0.288	0.000	0.007(65)	0.033(23)	0(0)	non tumor-specific	alt_5prime	no
UN_BACE2_LS0042	chr21:41243509|41245954:+	BACE2	beta-secretase 2	protein coding gene	no	.	32.620	9.329	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_Z95331.1_UP_LS0005	chr22:45646108|45646759:+	Z95331.1	-	lncRNA gene	no	.	1.552	1.306	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RAPGEFL1_LS0029	chr17:40190531|40190607:+	RAPGEFL1	Rap guanine nucleotide exchange factor like 1	protein coding gene	no	.	2.606	1.262	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TMEM79_LS008	chr1:156285267|156286424:+	TMEM79	transmembrane protein 79	protein coding gene	no	.;.;.	1.188	0.945	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_MIR642B_UP_LS0002	chr19:45678318|45687561:-	MIR642B	microRNA 642b	small non-coding RNA gene	no	.	1.363	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP8_LS0058	chr22:44848050|44848937:+	ARHGAP8	Rho GTPase activating protein 8	protein coding gene	no	.	5.677	1.111	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TCN1_UP_LS0002	chr11:60072789|60073325:-	TCN1	transcobalamin 1	protein coding gene	no	.	10.338	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPECC1_LS0022	chr17:20156236|20204360:+	SPECC1	sperm antigen with calponin homology and coiled-coil domains 1	protein coding gene	no	.	1.284	0.094	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
RHOT1_LS025	chr17:32207563|32208107:+	RHOT1	ras homolog family member T1	protein coding gene	no	ENST00000584692.1	0.480	0.229	1.312	0.176(1690)	0.219(154)	0.546(9497)	non tumor-specific	exon_skip	yes
FAM49A_LS010	chr2:16588129|16622939:-	FAM49A	CYFIP related Rac1 interactor A	protein coding gene	no	ENST00000406434.5	0.126	0.431	0.824	0.184(1765)	0.248(174)	0.217(3774)	non tumor-specific	exon_skip	yes
AURKAIP1_LS002	chr1:1374445|1374705:-	AURKAIP1	aurora kinase A interacting protein 1	protein coding gene	no	ENST00000338370.7;ENST00000338338.9;ENST00000321751.9;ENST00000378853.3	131.144	73.156	193.903	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATRAID_LS011	chr2:27216620|27216844:+	ATRAID	all-trans retinoic acid induced differentiation factor	protein coding gene	no	ENST00000380171.7;ENST00000611786.4;ENST00000606999.5;ENST00000405489.7;ENST00000472515.1	397.748	208.057	247.999	0.983(9415)	0.983(690)	0.979(17021)	non tumor-specific	exon_skip	yes
ATP13A3_LS036	chr3:194457174|194459471:-	ATP13A3	ATPase 13A3	protein coding gene	no	ENST00000439040.5;ENST00000645538.1;ENST00000256031.8;ENST00000645319.1	16.997	13.077	7.785	0.85(8144)	0.959(673)	0.924(16056)	non tumor-specific	exon_skip	yes
KRBOX4_LS012	chrX:46463308|46471142:+	KRBOX4	KRAB box domain containing 4	protein coding gene	no	ENST00000377919.6;ENST00000487081.1	4.233	2.486	1.720	0.749(7176)	0.748(525)	0.773(13434)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GPBP1L1_LS0016	chr1:45633645|45634096:-	GPBP1L1	GC-rich promoter binding protein 1 like 1	protein coding gene	no	.	12.467	10.633	0.000	0.011(107)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ARVCF_LS028	chr22:19979080|19979743:-	ARVCF	ARVCF delta catenin family member	protein coding gene	no	ENST00000263207.7;ENST00000401994.5;ENST00000406522.5;ENST00000406259.1;ENST00000263207.7;ENST00000401994.5;ENST00000406522.5;ENST00000406259.1	10.931	7.323	15.274	0.938(8990)	0.972(682)	0.959(16677)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SUMO1P3_UP_LS0002	chr1:160232721|160289612:+	SUMO1P3	SUMO1 pseudogene 3	pseudogene	no	.	0.994	0.428	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IL3RA_LS0092	chrX:1378155|1378322:-	IL3RA	interleukin 3 receptor subunit alpha	protein coding gene	no	.	2.693	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
ERMARD_LS037	chr6:169776065|169779182:+	ERMARD	ER membrane associated RNA degradation	protein coding gene	no	ENST00000418781.7	3.690	1.785	1.574	0.384(3683)	0.366(257)	0.407(7081)	non tumor-specific	exon_skip	yes
UN_DENND4C_LS0054	chr9:19358160|19360254:+	DENND4C	DENN domain containing 4C	protein coding gene	no	.	2.276	0.477	0.000	0.006(59)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_KIAA1522_LS0045	chr1:32770225|32770424:-	KIAA1522	KIAA1522	protein coding gene	no	.	1.988	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF320_LS0012	chr19:52876727|52886366:-	ZNF320	zinc finger protein 320	protein coding gene	no	.	2.446	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	nAS	no
WLS_LS004	chr1:68137933|68144569:-	WLS	Wnt ligand secretion mediator	protein coding gene	no	ENST00000354777.6;ENST00000262348.8;ENST00000370976.7	142.474	128.791	83.486	0.98(9394)	0.997(700)	0.974(16938)	non tumor-specific	exon_skip	yes
AL603832.3_LS012	chr1:112710851|112711266:-	AL603832.3	-	protein coding gene	no	ENST00000471038.6;ENST00000606954.1;ENST00000471038.6;ENST00000606954.1	0.098	0.034	1.317	0.343(3282)	0.291(204)	0.484(8406)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EYS_LS0045	chr6:63813798|63815237:+	EYS	eyes shut homolog	protein coding gene	no	.	1.048	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDHR5_LS0019	chr11:618658|618790:+	CDHR5	cadherin related family member 5	protein coding gene	no	.	6.591	4.529	0.000	0.002(20)	0.011(8)	0(0)	non tumor-specific	nAS	no
HYDIN_LS049	chr16:70933726|70935952:-	HYDIN	HYDIN axonemal central pair apparatus protein	protein coding gene	no	ENST00000309900.11	0.290	0.129	0.765	0.002(20)	0.004(3)	0.184(3202)	non tumor-specific	exon_skip	yes
UN_AC092447.7_LS0004	chr7:56428441|56448219:-	AC092447.7	-	pseudogene	no	.	2.680	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
DDX39B_LS004	chr6:31530949|31531053:-	DDX39B	DExD-box helicase 39B	protein coding gene	no	ENST00000376177.6	1.407	1.311	1.380	0.717(6870)	0.631(443)	0.743(12916)	non tumor-specific	alt_3prime	yes
UN_ARHGAP21_LS0060	chr10:24656985|24657343:+	ARHGAP21	Rho GTPase activating protein 21	protein coding gene	no	.	2.608	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
EMC3-AS1_LS010	chr3:9988748|9992869:+	EMC3-AS1	EMC3 antisense RNA 1	pseudogene	no	ENST00000438698.1	0.030	0.000	0.588	0(2)	0(0)	0.002(35)	non tumor-specific	nAS	yes
PLPP4_LS001	chr10:120457361|120503818:+	PLPP4	phospholipid phosphatase 4	protein coding gene	no	ENST00000398250.5;ENST00000427079.5	4.491	2.329	2.127	0.553(5303)	0.346(243)	0.448(7792)	non tumor-specific	exon_skip	yes
AC005726.4_LS001	chr17:28573367|28574197:+	AC005726.4	-	lncRNA gene	no	ENST00000585189.1	1.410	0.890	1.577	0.714(6839)	0.802(563)	0.501(8715)	non tumor-specific	nAS	yes
GCN1_LS020	chr12:120145330|120147052:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6	49.299	26.765	33.552	0.981(9396)	0.991(696)	0.978(17005)	non tumor-specific	exon_skip	yes
UN_ABCC3_LS0067	chr17:50679193|50686516:-	ABCC3	ATP binding cassette subfamily C member 3	protein coding gene	no	.	1.952	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PKN2-AS1_UP_LS0002	chr1:88891630|88892040:-	PKN2-AS1	PKN2 antisense RNA 1	lncRNA gene	no	.	1.373	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
NPR3_LS006	chr5:32739030|32774708:+	NPR3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	ENST00000509104.5;ENST00000434067.6;ENST00000326958.5;ENST00000506712.1;ENST00000265074.12;ENST00000415167.2	12.510	18.055	4.215	0.529(5070)	0.838(588)	0.699(12144)	non tumor-specific	exon_skip	yes
PDE8A_LS010	chr15:85083644|85091044:+	PDE8A	phosphodiesterase 8A	protein coding gene	no	ENST00000478717.5	0.144	0.195	0.687	0.295(2825)	0.45(316)	0.108(1881)	non tumor-specific	exon_skip	yes
SLC9C1_LS013	chr3:112208373|112217442:-	SLC9C1	solute carrier family 9 member C1	protein coding gene	no	ENST00000305815.9;ENST00000487372.5	28.739	0.000	0.711	0(3)	0(0)	0.026(450)	non tumor-specific	exon_skip	yes
AC125611.4_LS004	chr12:49297706|49303100:-	AC125611.4	-	lncRNA gene	no	ENST00000553259.1	2.578	1.566	1.205	0.005(50)	0.017(12)	0.013(219)	non tumor-specific	nAS	yes
UN_ZBED4_LS0016	chr22:49880666|49883334:+	ZBED4	zinc finger BED-type containing 4	protein coding gene	no	.	1.065	0.200	0.000	0.018(171)	0.009(6)	0(0)	non tumor-specific	nAS	no
CFTR_LS020	chr7:117559655|117564669:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000472848.1	0.093	0.339	0.674	0.017(161)	0.023(16)	0.021(357)	non tumor-specific	exon_skip	yes
MAPKAPK5_LS016	chr12:111868861|111871085:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	.;.	4.907	0.531	0.000	0.019(180)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC130_LS001	chr19:13731931|13732175:+	CCDC130	coiled-coil domain containing 130	protein coding gene	no	ENST00000540216.5	0.544	0.426	0.891	0.504(4829)	0.47(330)	0.45(7822)	non tumor-specific	alt_5prime;intron_retention	yes
UN_GSTT2_LS0001	chr22:23980309|23980535:+	GSTT2	glutathione S-transferase theta 2 (gene/pseudogene)	pseudogene	no	.	3.352	1.108	0.000	0.089(850)	0.097(68)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SLC47A1_LS048	chr17:19577514|19578744:+	SLC47A1	solute carrier family 47 member 1	protein coding gene	no	ENST00000581558.1;ENST00000581558.1	1.734	0.379	0.811	0.195(1872)	0.239(168)	0.109(1902)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
DDX42_LS028	chr17:63812208|63813228:+	DDX42	DEAD-box helicase 42	protein coding gene	no	ENST00000578681.5;ENST00000583590.5;ENST00000389924.6;ENST00000359353.9;ENST00000577940.6;ENST00000457800.3;ENST00000584010.5;ENST00000578593.1	105.912	62.190	88.171	0.992(9504)	0.996(699)	0.979(17021)	non tumor-specific	nAS	yes
LRRK1_LS005	chr15:100973967|100983528:+	LRRK1	leucine rich repeat kinase 1	protein coding gene	no	ENST00000388948.7;ENST00000532029.6;ENST00000525284.5;ENST00000531270.5	2.886	1.643	2.713	0.603(5780)	0.689(484)	0.809(14060)	non tumor-specific	exon_skip	yes
CHUK_LS016	chr10:100207332|100209595:-	CHUK	component of inhibitor of nuclear factor kappa B kinase complex	protein coding gene	yes	ENST00000370397.7	19.913	16.193	10.974	0.907(8694)	0.973(683)	0.973(16920)	non tumor-specific	alt_3prime;exon_skip	yes
HDC_LS010	chr15:50254664|50258404:-	HDC	hdc homolog, cell cycle regulator	protein coding gene	no	ENST00000559190.5	0.017	0.008	0.711	0.017(166)	0.019(13)	0.035(605)	non tumor-specific	exon_skip	yes
UN_ELF3_LS0002	chr1:202008344|202009167:+	ELF3	E74 like ETS transcription factor 3	protein coding gene	no	.	0.622	2.200	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TUBGCP6_LS0049	chr22:50226842|50226992:-	TUBGCP6	tubulin gamma complex associated protein 6	protein coding gene	no	.	1.050	0.059	0.000	0.012(115)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PWRN1_LS002	chr15:24507478|24507954:+	PWRN1	Prader-Willi region non-protein coding RNA 1	lncRNA gene	no	ENST00000565893.1	0.354	0.357	1.401	0.023(225)	0.071(50)	0.238(4143)	non tumor-specific	nAS	yes
UN_PLA2G15_LS0001	chr16:68245553|68248572:+	PLA2G15	phospholipase A2 group XV	protein coding gene	no	.	0.677	0.709	0.000	0.011(104)	0.026(18)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MCEMP1_LS006	chr19:7678604|7678924:+	MCEMP1	mast cell expressed membrane protein 1	protein coding gene	no	ENST00000333598.7;ENST00000597445.1;ENST00000598851.1	4.445	39.480	1.978	0.409(3919)	0.279(196)	0.607(10548)	non tumor-specific	nAS	yes
CDK16_LS024	chrX:47226909|47226994:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	ENST00000457458.6;ENST00000357227.8;ENST00000622098.4;ENST00000428400.5;ENST00000518022.5;ENST00000276052.10;ENST00000523344.5;ENST00000523699.5;ENST00000523543.1	156.531	69.103	128.455	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
FAM41C_LS004	chr1:868675|875040:-	FAM41C	family with sequence similarity 41 member C	lncRNA gene	no	ENST00000427857.1	1.567	0.129	0.706	0.034(323)	0.047(33)	0.018(313)	non tumor-specific	nAS	yes
POLD2_LS033	chr7:44122459|44123179:-	POLD2	DNA polymerase delta 2, accessory subunit	protein coding gene	no	ENST00000406581.6	0.157	0.000	0.603	0.001(13)	0(0)	0.013(229)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_GNG12_LS0003	chr1:67701968|67702070:+	GNG12	G protein subunit gamma 12	protein coding gene	no	.	14.639	0.104	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_BOK_LS0074	chr2:241572585|241573445:+	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	5.187	1.219	0.000	0.024(231)	0.023(16)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC117569.1_UP_LS0012	chr18:29257042|29259514:+	AC117569.1	-	lncRNA gene	no	.	1.272	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
YWHAQ_LS001	chr2:9585345|9587414:-	YWHAQ	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein coding gene	yes	ENST00000381844.8;ENST00000238081.7;ENST00000474715.1	548.219	280.100	398.191	0.951(9115)	0.953(669)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AL391832.2_LS001	chr1:234957521|234957679:-	AL391832.2	-	lncRNA gene	no	ENST00000418557.1	0.194	0.071	0.787	0.046(437)	0.047(33)	0.062(1077)	non tumor-specific	nAS	yes
ZNF888_LS004	chr19:52917404|52917859:-	ZNF888	zinc finger protein 888	protein coding gene	no	ENST00000596623.2	0.717	0.502	0.668	0.285(2726)	0.356(250)	0.097(1692)	non tumor-specific	nAS	yes
UN_YLPM1_LS0055	chr14:74781781|74781824:-	YLPM1	YLP motif containing 1	protein coding gene	no	.	1.448	0.259	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
DIP2A_LS022	chr21:46541895|46545137:+	DIP2A	disco interacting protein 2 homolog A	protein coding gene	no	ENST00000400274.5;ENST00000457905.7;ENST00000466639.5;ENST00000435722.7;ENST00000417564.2;ENST00000473752.5;ENST00000494435.5;ENST00000480553.1	15.244	8.364	21.663	0.989(9476)	0.983(690)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_ZNF761_LS0072	chr19:53453938|53454650:+	ZNF761	zinc finger protein 761	protein coding gene	no	.	1.145	0.318	0.000	0.011(101)	0.01(7)	0(0)	non tumor-specific	nAS	no
CDK12_LS013	chr17:39520087|39524674:+	CDK12	cyclin dependent kinase 12	protein coding gene	no	ENST00000584632.5;ENST00000430627.6;ENST00000447079.4	34.481	17.754	20.031	0.941(9016)	0.98(688)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_GLS2_LS0003	chr12:56471833|56472116:+	GLS2	glutaminase 2	protein coding gene	yes	.	3.488	1.782	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
CACNB3_LS046	chr12:48826854|48826974:+	CACNB3	calcium voltage-gated channel auxiliary subunit beta 3	protein coding gene	no	ENST00000540990.5;ENST00000548860.5;ENST00000536187.6;ENST00000547392.5;ENST00000301050.6;ENST00000547230.5;ENST00000551544.5;ENST00000552480.1	40.624	26.245	26.628	0.968(9272)	0.927(651)	0.972(16902)	non tumor-specific	alt_3prime	yes
UN_ADGRA1_UP_LS0013	chr10:133014614|133015233:+	ADGRA1	adhesion G protein-coupled receptor A1	protein coding gene	no	.	2.292	0.732	0.000	0.033(319)	0.028(20)	0(0)	non tumor-specific	nAS	no
FAM114A1_LS004	chr4:38868546|38878071:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	ENST00000358869.4	4.182	3.492	3.891	0.884(8467)	0.97(681)	0.832(14465)	non tumor-specific	exon_skip;mutex_exons	yes
ZNF585A_LS012	chr19:37165696|37169839:-	ZNF585A	zinc finger protein 585A	protein coding gene	no	ENST00000356958.8;ENST00000392157.2;ENST00000588354.1	20.916	11.416	12.857	0.976(9353)	0.986(692)	0.977(16978)	non tumor-specific	exon_skip	yes
PLA2G7_LS009	chr6:46716528|46716975:-	PLA2G7	phospholipase A2 group VII	protein coding gene	yes	ENST00000274793.11;ENST00000537365.1	14.241	9.499	2.777	0.868(8316)	0.746(524)	0.659(11452)	non tumor-specific	exon_skip	yes
UN_EYA4_UP_LS0007	chr6:133174337|133174781:+	EYA4	EYA transcriptional coactivator and phosphatase 4	protein coding gene	yes	.	1.775	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
FAM118B_LS008	chr11:126229336|126234995:+	FAM118B	family with sequence similarity 118 member B	protein coding gene	no	ENST00000530043.5	4.599	3.116	0.630	0.272(2607)	0.289(203)	0.032(564)	non tumor-specific	alt_5prime;exon_skip	yes
ADGRB2_LS029	chr1:31738630|31738832:-	ADGRB2	adhesion G protein-coupled receptor B2	protein coding gene	no	ENST00000398556.7;ENST00000398547.5;ENST00000373655.6;ENST00000398542.5;ENST00000373658.7;ENST00000527361.5;ENST00000398538.5;ENST00000466109.1;ENST00000420125.5	15.529	18.417	4.425	0.769(7367)	0.755(530)	0.87(15115)	non tumor-specific	nAS	yes
GTF2IP12_LS001	chr4:119410138|119410232:-	GTF2IP12	general transcription factor IIi pseudogene 12	pseudogene	no	ENST00000634317.1	2.683	0.555	3.341	0.078(746)	0.064(45)	0.911(15831)	non tumor-specific	nAS	yes
UN_RGS12_LS0020	chr4:3342629|3342937:+	RGS12	regulator of G protein signaling 12	protein coding gene	no	.	1.525	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_5prime	no
ANKFN1_LS027	chr17:56449186|56456861:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000318698.6;ENST00000566473.6	3.278	1.119	1.366	0.113(1085)	0.07(49)	0.327(5689)	non tumor-specific	nAS	yes
AC005972.3_LS008	chr17:62967678|62968500:-	AC005972.3	-	lncRNA gene	no	ENST00000581596.1	0.212	0.105	0.673	0.106(1015)	0.064(45)	0.039(679)	non tumor-specific	nAS	yes
UMODL1_LS035	chr21:42137641|42142096:+	UMODL1	uromodulin like 1	protein coding gene	no	ENST00000400427.5;ENST00000400424.6;ENST00000408989.6;ENST00000408910.6;ENST00000400423.6	5.750	0.461	1.121	0.118(1131)	0.021(15)	0.221(3845)	non tumor-specific	exon_skip	yes
TAPT1_LS022	chr4:16202580|16213768:-	TAPT1	transmembrane anterior posterior transformation 1	protein coding gene	no	ENST00000405303.6;ENST00000508888.5;ENST00000513359.5;ENST00000510868.5;ENST00000505152.5;ENST00000511156.1	10.327	11.025	11.269	0.908(8700)	0.983(690)	0.973(16921)	non tumor-specific	exon_skip;intron_retention	yes
ADGRD2_LS028	chr9:124475615|124476357:+	ADGRD2	adhesion G protein-coupled receptor D2	protein coding gene	no	ENST00000334810.5;ENST00000610875.1	8.875	1.009	1.499	0.012(119)	0.063(44)	0.144(2503)	non tumor-specific	nAS	yes
UN_KCTD13_LS0028	chr16:29923359|29925148:-	KCTD13	potassium channel tetramerization domain containing 13	protein coding gene	no	.	1.523	0.336	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UTY_LS035	chrY:13359986|13366267:-	UTY	ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	protein coding gene	no	ENST00000540140.5	0.033	0.023	0.917	0.052(503)	0.105(74)	0.207(3603)	non tumor-specific	exon_skip	yes
UN_G6PC_UP_LS0010	chr17:42852943|42872405:+	G6PC	glucose-6-phosphatase catalytic subunit	protein coding gene	no	.	5.403	4.409	0.000	0.002(15)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ADRM1_UP_LS0001	chr20:62228301|62232405:+	ADRM1	adhesion regulating molecule 1	protein coding gene	no	.	2.056	0.336	0.000	0.009(83)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC092821.3_LS017	chr12:9617351|9653683:+	AC092821.3	-	lncRNA gene	no	ENST00000633848.1	1.681	0.000	0.728	0.002(23)	0(0)	0.172(2997)	non tumor-specific	nAS	yes
KLHDC1_LS015	chr14:49732816|49734589:+	KLHDC1	kelch domain containing 1	protein coding gene	no	ENST00000556392.5;ENST00000555704.5;ENST00000359332.6;ENST00000557128.1;ENST00000554512.1	4.091	3.738	9.457	0.615(5893)	0.866(608)	0.951(16523)	non tumor-specific	nAS	yes
LINC02551_LS003	chr11:130847042|130847539:-	LINC02551	long intergenic non-protein coding RNA 2551	lncRNA gene	no	ENST00000533434.1	0.614	0.045	0.545	0.044(420)	0.003(2)	0.003(44)	non tumor-specific	nAS	yes
UN_CBX4_UP_LS0001	chr17:79845931|79848059:-	CBX4	chromobox 4	protein coding gene	no	.	2.123	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
RIC1_LS010	chr9:5743013|5743689:+	RIC1	RIC1 homolog, RAB6A GEF complex partner 1	protein coding gene	no	ENST00000251879.10;ENST00000418622.7;ENST00000414202.6;ENST00000545641.5;ENST00000276898.3	8.848	5.860	9.290	0.814(7798)	0.936(657)	0.952(16547)	non tumor-specific	exon_skip	yes
UN_PRPF40A_UP_LS0002	chr2:152822454|152826965:-	PRPF40A	pre-mRNA processing factor 40 homolog A	protein coding gene	no	.	7.895	1.247	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC104057.1_UP_LS0001	chr7:65476415|65477433:+	AC104057.1	-	pseudogene	no	.	3.894	0.369	0.000	0.015(141)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_AC007686.2_LS0011	chr14:77074598|77086367:-	AC007686.2	-	lncRNA gene	no	.	2.981	0.430	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
KRT16P1_LS003	chr17:18440311|18440426:+	KRT16P1	keratin 16 pseudogene 1	pseudogene	no	ENST00000581210.1	0.193	0.067	0.672	0.179(1717)	0.103(72)	0.013(221)	non tumor-specific	nAS	yes
UN_L3MBTL2_LS0017	chr22:41217202|41217516:+	L3MBTL2	L3MBTL histone methyl-lysine binding protein 2	protein coding gene	no	.	1.191	0.089	0.000	0.011(104)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SNED1_LS047	chr2:241073364|241081677:+	SNED1	sushi, nidogen and EGF like domains 1	protein coding gene	no	ENST00000310397.12;ENST00000310397.12;ENST00000310397.12	3.443	4.353	14.710	0.69(6615)	0.942(661)	0.941(16362)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PIH1D1_LS033	chr19:49451578|49453393:-	PIH1D1	PIH1 domain containing 1	protein coding gene	no	ENST00000596049.5	0.535	0.272	0.730	0.328(3143)	0.38(267)	0.315(5484)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SULT1C3_LS0001	chr2:108258828|108258966:+	SULT1C3	sulfotransferase family 1C member 3	protein coding gene	no	.	9.582	2.523	0.000	0.029(278)	0.063(44)	0(0)	non tumor-specific	exon_skip	no
UN_AL353795.1_UP_LS0012	chr9:35156604|35162086:-	AL353795.1	-	pseudogene	no	.	1.133	0.455	0.000	0.003(30)	0.013(9)	0(0)	non tumor-specific	nAS	no
ANKS3_LS036	chr16:4726780|4726979:-	ANKS3	ankyrin repeat and sterile alpha motif domain containing 3	protein coding gene	no	ENST00000614075.4;ENST00000591653.5;ENST00000304283.8;ENST00000585773.5;ENST00000590147.5;ENST00000592190.1	2.168	1.222	4.833	0.946(9064)	0.915(642)	0.945(16430)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ABR_LS0237	chr17:1164147|1164354:+	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	1.115	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DPP3_LS028	chr11:66495750|66497298:+	DPP3	dipeptidyl peptidase 3	protein coding gene	no	ENST00000531863.5;ENST00000532677.5;ENST00000541961.5;ENST00000530165.5	117.437	49.311	31.410	0.992(9503)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_POLR2A_LS0419	chr17:7513905|7513975:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	9.008	0.710	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
PHB2_LS012	chr12:6967248|6967676:-	PHB2	prohibitin 2	protein coding gene	no	ENST00000543465.5;ENST00000535923.5;ENST00000399433.6;ENST00000542912.5	764.518	365.530	410.755	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
GAGE12E_LS002	chrX:49552527|49552993:+	GAGE12E	G antigen 12E	protein coding gene	no	ENST00000381698.3	18.032	1.815	0.000	0.102(978)	0.013(9)	0(0)	non tumor-specific	nAS	yes
UBAP2L_LS047	chr1:154268954|154269362:+	UBAP2L	ubiquitin associated protein 2 like	protein coding gene	no	ENST00000428595.1;ENST00000493867.1	24.564	10.495	20.039	0.977(9357)	0.972(682)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CLCN7_LS001	chr16:1446717|1447006:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	ENST00000563642.6;ENST00000382745.8;ENST00000448525.5;ENST00000565092.6;ENST00000262318.12;ENST00000567836.2	147.751	50.139	94.446	0.99(9489)	0.981(689)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GBA2_LS0046	chr9:35748660|35748730:+	GBA2	glucosylceramidase beta 2	protein coding gene	no	.	1.055	0.600	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRDM5_LS002	chr4:120695275|120710309:-	PRDM5	PR/SET domain 5	protein coding gene	yes	ENST00000264808.7;ENST00000428209.6;ENST00000515109.5;ENST00000505484.5;ENST00000506065.1	1.884	1.455	3.697	0.397(3806)	0.692(486)	0.872(15151)	non tumor-specific	exon_skip	yes
CCSER1_LS017	chr4:90723991|90727204:+	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	ENST00000504150.1;ENST00000510519.1	4.623	0.000	0.692	0.002(22)	0(0)	0.034(595)	non tumor-specific	exon_skip	yes
AC053481.2_LS004	chr17:62286088|62286630:-	AC053481.2	-	pseudogene	no	ENST00000582394.1	7.521	1.246	0.602	0.071(677)	0.09(63)	0.046(805)	non tumor-specific	nAS	yes
UN_AK3_LS0027	chr9:4727924|4740937:-	AK3	adenylate kinase 4	protein coding gene	no	.	3.447	2.193	0.000	0.247(2363)	0.293(206)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PSMD9_UP_LS0002	chr12:121854914|121880224:+	PSMD9	proteasome 26S subunit, non-ATPase 9	protein coding gene	no	.	2.120	0.209	0.000	0.014(130)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1211P_UP_LS0017	chr1:232292983|232295478:+	RNU6-1211P	RNA, U6 small nuclear 1211, pseudogene	small non-coding RNA gene	no	.	4.917	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CEP350_LS012	chr1:180012075|180013847:+	CEP350	centrosomal protein 350	protein coding gene	no	ENST00000367607.7	6.197	3.603	4.176	0.578(5542)	0.734(515)	0.902(15674)	non tumor-specific	alt_3prime	yes
ZNF575_LS005	chr19:43533110|43534337:+	ZNF575	zinc finger protein 575	protein coding gene	no	ENST00000598080.5	0.428	0.153	0.657	0.036(348)	0.031(22)	0.012(206)	non tumor-specific	exon_skip	yes
UN_CCDC14_LS0005	chr3:123915718|123929344:-	CCDC14	coiled-coil domain containing 14	protein coding gene	no	.	1.500	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AVEN_LS0012	chr15:34003209|34023217:-	AVEN	apoptosis and caspase activation inhibitor	protein coding gene	no	.	1.255	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
AHNAK_LS025	chr11:62520768|62525416:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.;.;.	6.128	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MICAL1_LS012	chr6:109446772|109452246:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	.;.	5.041	0.384	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PPARG_LS025	chr3:12399490|12405882:+	PPARG	peroxisome proliferator activated receptor gamma	protein coding gene	yes	ENST00000396999.2	0.491	0.290	0.830	0.086(821)	0.158(111)	0.175(3035)	non tumor-specific	exon_skip	yes
UN_CHD6_LS0037	chr20:41454218|41454626:-	CHD6	chromodomain helicase DNA binding protein 6	protein coding gene	no	.	0.532	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DSE_LS0026	chr6:116258967|116355680:+	DSE	dermatan sulfate epimerase	protein coding gene	no	.	1.119	0.031	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLA2G4A_LS012	chr1:186939230|186939980:+	PLA2G4A	phospholipase A2 group IVA	protein coding gene	no	ENST00000367466.3	11.514	8.826	5.201	0.779(7468)	0.907(637)	0.891(15496)	non tumor-specific	nAS	yes
KPNB1_LS022	chr17:47673165|47673490:+	KPNB1	karyopherin subunit beta 1	protein coding gene	no	ENST00000535458.6;ENST00000290158.8;ENST00000540627.5;ENST00000582097.5;ENST00000583013.1;ENST00000579901.5;ENST00000578718.1;ENST00000580019.1	181.214	85.436	123.801	0.995(9533)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
RNF17_LS008	chr13:24789424|24789698:+	RNF17	ring finger protein 17	protein coding gene	no	ENST00000255324.9;ENST00000255326.4;ENST00000255325.6	5.783	0.184	0.738	0.014(131)	0.003(2)	0.042(730)	non tumor-specific	nAS	yes
UN_FBRSL1_LS0122	chr12:132582808|132582971:+	FBRSL1	fibrosin like 1	protein coding gene	no	.	2.466	0.195	0.000	0.032(305)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
FRG1-DT_LS006	chr4:189895643|189937197:-	FRG1-DT	FRG1 divergent transcript	lncRNA gene	no	ENST00000508156.5	1.054	0.021	0.726	0.003(33)	0.006(4)	0.17(2960)	non tumor-specific	nAS	yes
UN_AC092944.1_LS0017	chr3:157235040|157240866:-	AC092944.1	-	lncRNA gene	no	.	2.739	0.209	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC009228.1_LS003	chr2:24214425|24221320:+	AC009228.1	-	lncRNA gene	no	ENST00000413989.5	0.439	0.342	1.928	0.383(3670)	0.59(414)	0.682(11855)	non tumor-specific	nAS	yes
TMEM145_LS011	chr19:42316561|42316662:+	TMEM145	transmembrane protein 145	protein coding gene	no	ENST00000301204.7;ENST00000598766.1	10.392	5.042	1.788	0.264(2527)	0.031(22)	0.637(11079)	non tumor-specific	intron_retention	yes
LINC00102_LS001	chrX:2613696|2614717:-	LINC00102	long intergenic non-protein coding RNA 102	lncRNA gene	no	ENST00000445785.6	0.275	0.021	0.520	0.002(20)	0.001(1)	0(1)	non tumor-specific	nAS	yes
UN_PHBP15_UP_LS0020	chr7:74837111|74876522:-	PHBP15	prohibitin pseudogene 15	pseudogene	no	.	1.448	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CSNK1G2-AS1_LS002	chr19:1953506|1953843:-	CSNK1G2-AS1	CSNK1G2 antisense RNA 1	lncRNA gene	no	ENST00000314315.7;ENST00000586395.2	0.575	0.000	0.716	0(4)	0(0)	0.014(252)	non tumor-specific	nAS	yes
RAB41_LS004	chrX:70282855|70283268:+	RAB41	RAB43, member RAS oncogene family	protein coding gene	no	ENST00000509895.5;ENST00000374473.6;ENST00000276066.4	0.160	0.000	0.798	0.004(35)	0(0)	0.021(372)	non tumor-specific	nAS	yes
UN_ANXA2_LS0093	chr15:60386086|60394377:-	ANXA2	annexin A2	protein coding gene	no	.	0.291	0.007	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PRKCI_LS015	chr3:170291941|170293383:+	PRKCI	protein kinase C iota	protein coding gene	yes	ENST00000295797.4;ENST00000476635.5	37.237	23.782	10.230	0.972(9314)	0.986(692)	0.963(16736)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
GRIN3A_LS005	chr9:101603034|101613376:-	GRIN3A	glutamate ionotropic receptor NMDA type subunit 3A	protein coding gene	no	ENST00000479772.1	0.931	0.500	0.810	0.014(130)	0.011(8)	0.025(440)	non tumor-specific	alt_3prime;intron_retention	yes
COL1A1_LS040	chr17:50195665|50195923:-	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	ENST00000225964.9	674.932	290.248	106.395	0.96(9198)	0.993(697)	0.944(16410)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LRRN1_LS001	chr3:3799919|3800965:+	LRRN1	leucine rich repeat neuronal 1	protein coding gene	no	ENST00000472075.1	0.797	0.086	0.738	0.088(841)	0.051(36)	0.038(669)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SHARPIN_LS0014	chr8:144099402|144099510:-	SHARPIN	SHANK associated RH domain interactor	protein coding gene	no	.	28.155	9.023	0.000	0.104(992)	0.114(80)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TOX4_LS015	chr14:21487860|21488590:+	TOX4	TOX high mobility group box family member 4	protein coding gene	no	ENST00000494242.1	0.124	0.128	0.680	0.074(712)	0.091(64)	0.14(2429)	non tumor-specific	alt_5prime;intron_retention	yes
PAAF1_LS024	chr11:73916660|73918950:+	PAAF1	proteasomal ATPase associated factor 1	protein coding gene	no	ENST00000541951.5;ENST00000310571.7;ENST00000535604.5;ENST00000536003.5;ENST00000544552.5;ENST00000376384.9;ENST00000544909.5	22.317	12.442	41.731	0.994(9526)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
ARHGEF38_LS023	chr4:105680976|105682461:+	ARHGEF38	Rho guanine nucleotide exchange factor 38	protein coding gene	no	ENST00000503289.1;ENST00000503289.1	0.253	0.067	0.817	0.054(520)	0.031(22)	0.07(1213)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPARC_LS0070	chr5:151662931|151663026:+	SPARC	secreted protein acidic and cysteine rich	protein coding gene	yes	.	48.840	1.793	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
SPOUT1_LS010	chr9:128826433|128826540:-	SPOUT1	SPOUT domain containing methyltransferase 1	protein coding gene	no	ENST00000361256.9;ENST00000466556.5;ENST00000467396.1	49.587	24.151	34.704	0.993(9518)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_PVT1_LS0001	chr8:127794734|127816828:+	PVT1	Pvt1 oncogene	lncRNA gene	yes	.	1.634	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRIM21_LS0018	chr11:4390458|4392912:-	TRIM21	tripartite motif containing 21	protein coding gene	no	.	1.514	0.122	0.000	0.007(63)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GLG1_LS0009	chr16:74448815|74448866:+	GLG1	golgi glycoprotein 1	protein coding gene	no	.	4.290	0.634	0.000	0.006(59)	0.004(3)	0(0)	non tumor-specific	nAS	no
TSPAN31_LS003	chr12:57743299|57745745:+	TSPAN31	tetraspanin 31	protein coding gene	no	ENST00000553221.5	1.197	0.015	0.919	0.026(252)	0.003(2)	0.144(2496)	non tumor-specific	exon_skip	yes
UN_RF00019_UP_LS2076	chrX:109866347|109866379:-	RF00019	-	small non-coding RNA gene	no	.	15.504	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MFSD9_LS005	chr2:102723909|102726845:-	MFSD9	major facilitator superfamily domain containing 9	protein coding gene	no	ENST00000258436.9;ENST00000438943.5;ENST00000437075.6	8.668	6.227	3.480	0.951(9113)	0.96(674)	0.917(15940)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EPHB6_UP_LS0015	chr7:142791845|142801193:+	EPHB6	EPH receptor B6	protein coding gene	yes	.	29.879	19.417	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	nAS	no
CPEB3_LS008	chr10:92181019|92192477:-	CPEB3	cytoplasmic polyadenylation element binding protein 3	protein coding gene	no	ENST00000614585.4;ENST00000265997.4	2.689	2.693	2.292	0.304(2913)	0.597(419)	0.827(14377)	non tumor-specific	alt_5prime	yes
PLOD3_LS012	chr7:101210642|101211591:-	PLOD3	procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	protein coding gene	no	.;.	22.269	5.187	0.000	0.016(158)	0.026(18)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC073346.1_LS004	chr7:113145775|113146040:+	AC073346.1	-	lncRNA gene	no	ENST00000430610.1	2.472	1.473	0.838	0.034(322)	0.085(60)	0.013(221)	non tumor-specific	nAS	yes
UN_ASNSD1_UP_LS0004	chr2:189529017|189537959:+	ASNSD1	asparagine synthetase domain containing 1	protein coding gene	no	.	2.825	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PARP8_LS0022	chr5:50822400|50826755:+	PARP8	poly(ADP-ribose) polymerase family member 8	protein coding gene	no	.	3.731	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_DNAH1_LS0049	chr3:52389586|52390816:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	.	1.694	0.051	0.000	0.012(114)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC006148.1_LS0006	chr7:124065373|124077247:+	AC006148.1	-	lncRNA gene	no	.	5.666	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
TBC1D22B_LS012	chr6:37317206|37331044:+	TBC1D22B	TBC1 domain family member 22B	protein coding gene	no	ENST00000373491.3	25.376	15.984	17.335	0.978(9373)	0.986(692)	0.979(17009)	non tumor-specific	nAS	yes
ODF2_LS020	chr9:128460299|128460550:+	ODF2	outer dense fiber of sperm tails 2	protein coding gene	no	ENST00000393527.7	0.059	0.047	0.653	0.108(1032)	0.077(54)	0.016(283)	non tumor-specific	alt_3prime;exon_skip	yes
TRPM2_LS006	chr21:44366934|44369177:+	TRPM2	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	ENST00000300482.9;ENST00000397928.5;ENST00000397932.6;ENST00000300481.13	3.901	2.138	1.752	0.386(3702)	0.319(224)	0.585(10175)	non tumor-specific	nAS	yes
PIGT_LS007	chr20:45416343|45420332:+	PIGT	phosphatidylinositol glycan anchor biosynthesis class T	protein coding gene	no	ENST00000545755.3	1.595	0.540	0.785	0.835(8003)	0.85(597)	0.304(5292)	non tumor-specific	exon_skip	yes
UN_ZSCAN5A_LS0046	chr19:56235927|56236033:-	ZSCAN5A	zinc finger and SCAN domain containing 5A	protein coding gene	no	.	5.714	0.826	0.000	0.008(81)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZC3H14_LS0023	chr14:88607714|88609267:+	ZC3H14	zinc finger CCCH-type containing 14	protein coding gene	no	.	2.979	0.228	0.000	0.005(51)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_RN7SL394P_UP_LS0005	chr10:67838033|67839802:-	RN7SL394P	RNA, 7SL, cytoplasmic 394, pseudogene	small non-coding RNA gene	no	.	1.668	0.364	0.000	0.008(77)	0.013(9)	0(0)	non tumor-specific	nAS	no
PIGX_LS009	chr3:196721356|196722415:+	PIGX	phosphatidylinositol glycan anchor biosynthesis class X	protein coding gene	no	ENST00000453218.6	0.123	0.211	1.095	0.122(1166)	0.11(77)	0.436(7583)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
IGSF9B_LS013	chr11:133921397|133922177:-	IGSF9B	immunoglobulin superfamily member 9B	protein coding gene	no	ENST00000533871.6;ENST00000321016.12	2.771	1.760	3.656	0.199(1909)	0.199(140)	0.794(13807)	non tumor-specific	alt_5prime;exon_skip	yes
SLC25A30_LS016	chr13:45411480|45418300:-	SLC25A30	solute carrier family 25 member 30	protein coding gene	no	ENST00000519676.5;ENST00000463262.1;ENST00000519676.5;ENST00000463262.1	3.798	4.973	3.458	0.795(7620)	0.913(641)	0.902(15687)	non tumor-specific	alt_5prime;exon_skip	yes
ADAMTS13_LS035	chr9:133455603|133456069:+	ADAMTS13	ADAM metallopeptidase with thrombospondin type 1 motif 13	protein coding gene	no	ENST00000371929.7	4.203	3.279	3.284	0.392(3760)	0.466(327)	0.901(15668)	non tumor-specific	alt_5prime	yes
UN_SMARCC1_LS0046	chr3:47658736|47661294:-	SMARCC1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1	protein coding gene	yes	.	2.490	0.550	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
HDAC1_LS012	chr1:32327077|32327536:+	HDAC1	histone deacetylase 1	protein coding gene	yes	ENST00000373548.7;ENST00000428704.1;ENST00000472928.5;ENST00000373548.7;ENST00000428704.1;ENST00000472928.5	128.898	80.024	55.133	0.995(9532)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
VSIG10L2_LS006	chr11:125952073|125953400:+	VSIG10L2	V-set and immunoglobulin domain containing 10 like 2	protein coding gene	no	ENST00000638636.2	3.486	0.105	1.472	0.008(79)	0.004(3)	0.133(2310)	non tumor-specific	nAS	yes
UN_FRMD4B_LS0056	chr3:69313517|69326592:-	FRMD4B	FERM domain containing 4B	protein coding gene	no	.	1.196	0.213	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
FER1L6_LS002	chr8:123956074|123963278:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	5.939	4.049	1.007	0.079(757)	0.275(193)	0.079(1380)	non tumor-specific	nAS	yes
PKP3_LS010	chr11:397445|397539:+	PKP3	plakophilin 3	protein coding gene	no	ENST00000533249.5;ENST00000331563.6;ENST00000524646.1	31.758	24.639	3.310	0.813(7787)	0.91(639)	0.713(12386)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
MAST2_LS035	chr1:46032261|46032326:+	MAST2	microtubule associated serine/threonine kinase 2	protein coding gene	no	ENST00000372009.3	0.091	0.082	0.768	0.164(1568)	0.124(87)	0.291(5050)	non tumor-specific	nAS	yes
MYOM2_LS014	chr8:2079613|2085263:+	MYOM2	myomesin 2	protein coding gene	no	ENST00000262113.8	3.063	12.758	2.178	0.073(703)	0.222(156)	0.6(10421)	non tumor-specific	nAS	yes
AC005391.1_LS001	chr19:956717|958042:+	AC005391.1	-	lncRNA gene	no	ENST00000613285.1	0.130	0.000	0.692	0.008(79)	0.001(1)	0.001(14)	non tumor-specific	nAS	yes
UN_ZNF189_LS0004	chr9:101399466|101399884:+	ZNF189	zinc finger protein 189	protein coding gene	no	.	1.630	0.091	0.000	0.008(72)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_AC079760.2_LS0020	chr7:91367590|91368154:-	AC079760.2	-	lncRNA gene	no	.	2.447	0.698	0.000	0.032(311)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_AC130686.1_UP_LS0030	chr17:41500284|41501194:+	AC130686.1	-	lncRNA gene	no	.	2.130	0.787	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
POLM_LS045	chr7:44079741|44080733:-	POLM	DNA polymerase mu	protein coding gene	no	ENST00000492321.5;ENST00000414235.5	0.044	0.057	0.814	0.456(4366)	0.462(324)	0.407(7066)	non tumor-specific	exon_skip	yes
UN_POM121_LS0075	chr7:72943160|72943221:-	POM121	POM121 and ZP3 fusion	protein coding gene	no	.	0.872	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SASS6_LS010	chr1:100110483|100119018:-	SASS6	SAS-6 centriolar assembly protein	protein coding gene	no	ENST00000287482.5;ENST00000462159.1	7.092	2.423	2.552	0.789(7556)	0.765(537)	0.866(15045)	non tumor-specific	nAS	yes
LINC02232_LS006	chr4:64977629|65004403:-	LINC02232	long intergenic non-protein coding RNA 2232	lncRNA gene	no	ENST00000509932.2	2.686	0.172	0.962	0.011(102)	0.016(11)	0.109(1896)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0312	chr14:104945625|104946616:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	19.042	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
F13B_LS009	chr1:197060542|197060899:-	F13B	coagulation factor XIII B chain	protein coding gene	no	ENST00000367412.1	32.904	32.016	20.040	0.039(370)	0.088(62)	0.02(348)	non tumor-specific	alt_5prime	yes
UN_ZNF208_LS0009	chr19:21960794|21974729:-	ZNF208	zinc finger protein 208	protein coding gene	no	.	2.530	0.051	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_ZCWPW1_UP_LS0005	chr7:100436064|100446213:-	ZCWPW1	zinc finger CW-type and PWWP domain containing 1	protein coding gene	no	.	1.283	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TBC1D23_LS004	chr3:100279760|100281718:+	TBC1D23	TBC1 domain family member 23	protein coding gene	no	ENST00000485687.5	0.052	0.041	0.588	0.023(219)	0.03(21)	0.013(223)	non tumor-specific	alt_3prime	yes
POU6F1_LS007	chr12:51196173|51197770:-	POU6F1	POU class 6 homeobox 1	protein coding gene	no	ENST00000552305.2;ENST00000552305.2	0.391	0.232	1.360	0.309(2957)	0.413(290)	0.612(10646)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ARHGEF39_LS0017	chr9:35661999|35662179:-	ARHGEF39	Rho guanine nucleotide exchange factor 39	protein coding gene	no	.	4.737	0.330	0.000	0.022(208)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
TLE3_LS039	chr15:70096261|70096677:-	TLE3	TLE family member 3, transcriptional corepressor	protein coding gene	no	ENST00000440567.7	0.051	0.160	0.647	0.228(2184)	0.197(138)	0.089(1551)	non tumor-specific	intron_retention	yes
IFT80_LS019	chr3:160357578|160366043:-	IFT80	intraflagellar transport 80	protein coding gene	no	ENST00000326448.11;ENST00000483465.5;ENST00000496589.5;ENST00000465537.5;ENST00000475677.5	8.325	6.016	13.940	0.929(8905)	0.937(658)	0.962(16725)	non tumor-specific	alt_5prime;exon_skip	yes
UN_UBTD1_LS0035	chr10:97544420|97553820:-	UBTD1	ubiquitin domain containing 1	protein coding gene	no	.	1.911	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZG16B_LS0003	chr16:2830328|2830417:+	ZG16B	zymogen granule protein 16B	protein coding gene	no	.	14.248	10.799	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_XPO6_LS0051	chr16:28176095|28180941:-	XPO6	exportin 6	protein coding gene	no	.	5.861	0.380	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_COX10_LS0008	chr17:14179281|14182021:+	COX10	cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	protein coding gene	no	.	2.740	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNT5A_LS0020	chr3:55480918|55488932:-	WNT5A	Wnt family member 5A	protein coding gene	yes	.	1.551	0.279	0.000	0.009(89)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_DENND3_LS0065	chr8:141191990|141192331:+	DENND3	DENN domain containing 3	protein coding gene	no	.	1.813	0.468	0.000	0.046(444)	0.056(39)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
MROH2A_LS031	chr2:233819469|233819902:+	MROH2A	maestro heat like repeat family member 2A	protein coding gene	no	ENST00000610772.4;ENST00000389758.3	3.445	2.491	1.272	0.023(224)	0.058(41)	0.067(1167)	non tumor-specific	exon_skip	yes
TTI1_LS010	chr20:38013857|38019005:-	TTI1	TELO2 interacting protein 1	protein coding gene	no	ENST00000373448.6	1.051	0.393	0.761	0.569(5450)	0.487(342)	0.311(5401)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARHGDIA_UP_LS0001	chr17:81879997|81887529:-	ARHGDIA	Rho GDP dissociation inhibitor alpha	protein coding gene	no	.	1.679	0.024	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
LYST_LS027	chr1:235746527|235747170:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000487530.2	0.869	0.517	1.833	0.479(4594)	0.748(525)	0.427(7415)	non tumor-specific	exon_skip;mutex_exons	yes
EPS8L2_LS028	chr11:709608|710028:+	EPS8L2	EPS8 like 2	protein coding gene	no	ENST00000527807.5	0.008	0.011	0.850	0.206(1978)	0.208(146)	0.195(3390)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LY75_LS025	chr2:159878493|159878633:-	LY75	lymphocyte antigen 75	protein coding gene	no	ENST00000263636.4;ENST00000484559.1	9.400	6.056	2.127	0.641(6143)	0.809(568)	0.683(11873)	non tumor-specific	nAS	yes
UN_ANTXRLP1_LS0017	chr10:46268857|46269382:-	ANTXRLP1	ANTXR like pseudogene 1	pseudogene	no	.	2.736	0.332	0.000	0.016(157)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC141424.1_LS001	chr17:404592|409197:-	AC141424.1	-	lncRNA gene	no	ENST00000599026.1	0.087	0.032	0.496	0.024(231)	0.021(15)	0.001(12)	non tumor-specific	nAS	yes
STK32C_LS005	chr10:132222772|132222861:-	STK32C	serine/threonine kinase 32C	protein coding gene	no	ENST00000462160.5;ENST00000368622.5;ENST00000298630.7	23.332	19.288	9.625	0.947(9069)	0.954(670)	0.974(16924)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GSE1_LS0144	chr16:85635583|85635733:-	GSE1	Gse1 coiled-coil protein	protein coding gene	no	.	5.365	0.257	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCN8A_LS014	chr12:51702914|51705417:+	SCN8A	sodium voltage-gated channel alpha subunit 8	protein coding gene	no	ENST00000638820.1;ENST00000550891.4;ENST00000354534.10;ENST00000545061.5;ENST00000355133.7;ENST00000599343.5;ENST00000627620.2;ENST00000551216.2	2.511	1.300	1.449	0.102(978)	0.036(25)	0.384(6666)	non tumor-specific	exon_skip	yes
UN_NCL_LS0043	chr2:231455246|231455443:-	NCL	nucleolin	protein coding gene	no	.	58.345	3.154	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HNRNPR_LS0037	chr1:23310826|23310854:-	HNRNPR	heterogeneous nuclear ribonucleoprotein R	protein coding gene	no	.	8.211	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BRAF_LS0008	chr7:140739946|140748932:-	BRAF	B-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	.	2.864	0.149	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00871_LS005	chr14:46211804|46438181:+	LINC00871	long intergenic non-protein coding RNA 871	lncRNA gene	no	ENST00000556886.1	1.666	0.113	0.706	0.006(57)	0.024(17)	0.006(106)	non tumor-specific	nAS	yes
NPIPB5_LS047	chr16:22527973|22530943:+	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	ENST00000539604.5	0.297	0.172	0.734	0.485(4646)	0.47(330)	0.173(3015)	non tumor-specific	exon_skip	yes
UN_KRT75_UP_LS0040	chr12:52451559|52472254:-	KRT75	keratin 75	protein coding gene	no	.	313.775	46.897	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	nAS	no
DCDC1_LS041	chr11:31110361|31127469:-	DCDC1	doublecortin domain containing 1	protein coding gene	no	ENST00000597505.5;ENST00000437348.5;ENST00000342355.8;ENST00000534722.5	0.976	0.625	0.783	0.017(164)	0.054(38)	0.069(1199)	non tumor-specific	exon_skip	yes
UN_WFS1_LS0086	chr4:6302694|6302879:-	WFS1	wolframin ER transmembrane glycoprotein	protein coding gene	no	.	1.181	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OSTN_LS0018	chr3:191242687|191259074:-	OSTN	osteocrin	protein coding gene	no	.	1.202	1.235	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
MID1IP1_LS001	chrX:38801487|38802535:+	MID1IP1	MID1 interacting protein 1	protein coding gene	no	ENST00000614558.2	1.507	1.120	1.673	0.779(7465)	0.852(598)	0.714(12408)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL035685.1_LS004	chr20:49329662|49330704:+	AL035685.1	-	pseudogene	no	ENST00000637575.1	2.473	0.000	0.937	0(1)	0(0)	0.01(169)	non tumor-specific	nAS	yes
SMURF1_LS004	chr7:99033121|99035515:-	SMURF1	SMAD specific E3 ubiquitin protein ligase 1	protein coding gene	yes	ENST00000361368.6;ENST00000361125.1	34.688	20.003	15.856	0.989(9472)	0.991(696)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
TFRC_LS008	chr3:196058632|196060180:-	TFRC	transferrin receptor	protein coding gene	no	ENST00000420415.5;ENST00000360110.8;ENST00000392396.7;ENST00000475593.5;ENST00000483983.5;ENST00000463356.5;ENST00000465288.5;ENST00000477148.1	57.391	30.470	25.849	0.979(9384)	0.989(694)	0.977(16977)	non tumor-specific	exon_skip	yes
AC073657.1_LS002	chr15:41770963|41772515:-	AC073657.1	-	lncRNA gene	no	ENST00000607504.1	0.048	0.024	0.653	0.157(1508)	0.127(89)	0.014(242)	non tumor-specific	nAS	yes
UN_AC018688.1_UP_LS0011	chr20:30398045|30403138:+	AC018688.1	-	pseudogene	no	.	1.133	0.296	0.000	0.018(174)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
KIZ-AS1_LS004	chr20:21214022|21218147:-	KIZ-AS1	KIZ antisense RNA 1	lncRNA gene	no	ENST00000616177.4;ENST00000443753.5;ENST00000433213.2	1.415	0.000	0.750	0(1)	0(0)	0.003(48)	non tumor-specific	nAS	yes
UN_DAB2IP_LS0111	chr9:121769319|121770546:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	.	1.056	1.523	0.000	0.004(42)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SLC4A10_LS0010	chr2:161965162|161979492:-	SLC4A10	solute carrier family 4 member 10	protein coding gene	no	.	2.052	0.690	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
WNK3_LS026	chrX:54333792|54357686:-	WNK3	WNK lysine deficient protein kinase 3	protein coding gene	no	ENST00000375169.7;ENST00000354646.6	2.499	0.117	0.724	0.04(388)	0.034(24)	0.075(1309)	non tumor-specific	alt_5prime	yes
EIF5B_LS006	chr2:99360549|99361148:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	ENST00000289371.10;ENST00000617677.1	128.263	77.458	115.029	0.996(9546)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
SLX4_LS013	chr16:3602307|3606474:-	SLX4	SLX4 structure-specific endonuclease subunit	protein coding gene	yes	ENST00000294008.3;ENST00000466154.5;ENST00000486524.1	2.411	1.108	1.508	0.712(6822)	0.734(515)	0.743(12922)	non tumor-specific	alt_3prime;exon_skip	yes
PEX5_LS032	chr12:7201841|7202612:+	PEX5	peroxisomal biogenesis factor 5	protein coding gene	no	ENST00000266563.9;ENST00000545574.5;ENST00000396637.7	3.364	2.064	20.136	0.972(9317)	0.991(696)	0.975(16944)	non tumor-specific	exon_skip	yes
LGALS8_LS034	chr1:236543648|236544750:+	LGALS8	galectin 8	protein coding gene	no	ENST00000527974.5;ENST00000352231.6;ENST00000526589.5;ENST00000341872.10;ENST00000416919.6;ENST00000450372.6;ENST00000366584.8;ENST00000238181.11;ENST00000323938.10;ENST00000526634.5;ENST00000525042.1;ENST00000528259.5;ENST00000532640.1;ENST00000489586.6;ENST00000525789.1	22.069	15.266	52.648	0.997(9556)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;intron_retention	yes
CDK19_LS015	chr6:110746196|110815009:-	CDK19	cyclin dependent kinase 19	protein coding gene	no	.;.	0.895	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TEX41_LS029	chr2:144863998|145182204:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000601277.5;ENST00000598248.5	0.000	0.000	1.683	0(1)	0(0)	0(2)	non tumor-specific	nAS	yes
MSLN_LS004	chr16:760821|761133:+	MSLN	mesothelin	protein coding gene	no	ENST00000563941.5	1.464	1.138	1.641	0.258(2476)	0.302(212)	0.163(2834)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MUC20-OT1_UP_LS0005	chr3:195638806|195639533:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	.	1.743	0.253	0.000	0.016(149)	0.006(4)	0(0)	non tumor-specific	nAS	no
MAN1C1_LS019	chr1:25778324|25782585:+	MAN1C1	mannosidase alpha class 1C member 1	protein coding gene	no	ENST00000496532.5	0.849	0.134	0.884	0.013(127)	0.014(10)	0.36(6252)	non tumor-specific	exon_skip	yes
UN_KLF15_LS0016	chr3:126354125|126357237:-	KLF15	Kruppel like factor 15	protein coding gene	no	.	0.657	0.168	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GLYATL1_LS0055	chr11:58999689|59022020:-	GLYATL1	glycine-N-acyltransferase like 1	protein coding gene	no	.	1.169	0.768	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC078925.1_UP_LS0014	chr12:131273245|131273365:-	AC078925.1	-	lncRNA gene	no	.	2.938	8.019	0.000	0.007(67)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_CDKAL1_LS0078	chr6:21065228|21198021:+	CDKAL1	CDK5 regulatory subunit associated protein 1 like 1	protein coding gene	no	.	3.519	1.273	0.000	0.154(1478)	0.093(65)	0(0)	non tumor-specific	exon_skip	no
UN_CCDC159_LS0023	chr19:11346960|11348750:+	CCDC159	coiled-coil domain containing 159	protein coding gene	no	.	0.691	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SPICE1_LS016	chr3:113499582|113503180:-	SPICE1	spindle and centriole associated protein 1	protein coding gene	no	ENST00000295872.8;ENST00000495812.5;ENST00000480527.1;ENST00000460832.1	10.066	4.912	6.958	0.889(8522)	0.917(644)	0.946(16435)	non tumor-specific	exon_skip	yes
UN_TEX47_UP_LS0011	chr7:89423248|89694321:-	TEX47	testis expressed 47	protein coding gene	no	.	4.469	1.636	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MGC32805_UP_LS0003	chr5:122546389|123023824:-	MGC32805	-	lncRNA gene	no	.	34.583	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TEP1_LS032	chr14:20379105|20379930:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000262715.9;ENST00000555008.5;ENST00000555727.5;ENST00000556935.5;ENST00000557314.5	10.304	7.189	13.594	0.878(8408)	0.93(653)	0.97(16854)	non tumor-specific	exon_skip	yes
DGKH_LS035	chr13:42209465|42210602:+	DGKH	diacylglycerol kinase eta	protein coding gene	no	ENST00000379274.6;ENST00000337343.8;ENST00000261491.9;ENST00000628433.2;ENST00000627777.2;ENST00000626247.2;ENST00000536612.3;ENST00000498255.6	2.701	1.325	2.579	0.491(4707)	0.618(434)	0.816(14182)	non tumor-specific	exon_skip	yes
NFYC_LS033	chr1:40763046|40763363:+	NFYC	nuclear transcription factor Y subunit gamma	protein coding gene	no	ENST00000372669.8	0.014	0.025	1.280	0.548(5252)	0.558(392)	0.572(9935)	non tumor-specific	exon_skip	yes
UN_ELFN1_UP_LS0002	chr7:1620124|1620657:+	ELFN1	extracellular leucine rich repeat and fibronectin type III domain containing 1	protein coding gene	no	.	15.800	0.116	0.000	0.041(397)	0.011(8)	0(0)	non tumor-specific	nAS	no
P4HA2_LS030	chr5:132218644|132277342:-	P4HA2	prolyl 4-hydroxylase subunit alpha 2	protein coding gene	no	ENST00000439698.5;ENST00000416053.5	0.316	2.828	0.801	0.119(1138)	0.251(176)	0.071(1226)	non tumor-specific	exon_skip	yes
UN_ST5_LS0053	chr11:8708347|8710845:-	ST5	DENN domain containing 2B	protein coding gene	yes	.	1.975	0.432	0.000	0.011(104)	0.016(11)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LAMTOR3_LS0012	chr4:99879810|99879844:-	LAMTOR3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein coding gene	no	.	11.020	3.201	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
NOS1AP_LS014	chr1:162365569|162367052:+	NOS1AP	nitric oxide synthase 1 adaptor protein	protein coding gene	no	ENST00000530878.5;ENST00000361897.9;ENST00000430120.3;ENST00000464284.1;ENST00000493151.1	6.326	7.781	3.274	0.844(8087)	0.947(665)	0.812(14115)	non tumor-specific	nAS	yes
UN_VLDLR_LS0019	chr9:2647592|2648669:+	VLDLR	very low density lipoprotein receptor	protein coding gene	no	.	1.832	0.477	0.000	0.019(185)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
UN_DEFB4A_UP_LS0001	chr8:7848843|7882423:+	DEFB4A	defensin beta 4A	protein coding gene	no	.	4.568	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02235_LS0003	chr8:81844571|81848991:+	LINC02235	long intergenic non-protein coding RNA 2235	no	no	.	0.929	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDK20_LS0012	chr9:87969307|87969796:-	CDK20	cyclin dependent kinase 20	protein coding gene	no	.	2.180	1.273	0.000	0.003(31)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PLD5_LS0018	chr1:242178365|242184853:+	PLD5	phospholipase D family member 5	protein coding gene	no	.	4.931	0.317	0.000	0.014(135)	0.003(2)	0(0)	non tumor-specific	nAS	no
DYNC1I2_LS016	chr2:171707377|171712767:+	DYNC1I2	dynein cytoplasmic 1 intermediate chain 2	protein coding gene	no	ENST00000452242.5;ENST00000397119.7;ENST00000438879.5;ENST00000409317.5;ENST00000409773.5;ENST00000411953.5;ENST00000409453.5;ENST00000443458.5;ENST00000430778.5;ENST00000422646.1;ENST00000482454.5	2.627	5.046	2.815	0.833(7977)	0.896(629)	0.583(10131)	non tumor-specific	exon_skip	yes
SHC4_LS015	chr15:48924949|48962431:-	SHC4	SHC adaptor protein 4	protein coding gene	no	ENST00000332408.8	3.052	0.753	1.623	0.169(1621)	0.161(113)	0.468(8135)	non tumor-specific	exon_skip	yes
UN_GTF3C2_LS0034	chr2:27329282|27329365:-	GTF3C2	general transcription factor IIIC subunit 2	protein coding gene	no	.	2.575	0.697	0.000	0.024(228)	0.03(21)	0(0)	non tumor-specific	alt_5prime	no
ERO1A_LS022	chr14:52683907|52695368:-	ERO1A	endoplasmic reticulum oxidoreductase 1 alpha	protein coding gene	no	ENST00000395686.7;ENST00000554019.5;ENST00000556039.5;ENST00000629528.2;ENST00000556223.1	14.534	7.690	13.435	0.907(8688)	0.923(648)	0.976(16959)	non tumor-specific	alt_3prime;exon_skip	yes
BAZ1A_LS008	chr14:34765268|34771511:-	BAZ1A	bromodomain adjacent to zinc finger domain 1A	protein coding gene	no	ENST00000358716.8;ENST00000382422.6;ENST00000360310.5	38.146	15.012	17.286	0.969(9280)	0.987(693)	0.976(16965)	non tumor-specific	exon_skip	yes
ST5_LS083	chr11:8831688|8832562:-	ST5	DENN domain containing 2B	protein coding gene	yes	ENST00000528452.1;ENST00000528452.1	0.262	0.113	0.630	0.216(2071)	0.141(99)	0.026(447)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_FAM183A_UP_LS0020	chr1:43130590|43137322:+	FAM183A	family with sequence similarity 183 member A	protein coding gene	no	.	1.085	0.055	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GPAA1P2_UP_LS0003	chr2:110390844|110447085:-	GPAA1P2	glycosylphosphatidylinositol anchor attachment 1 pseudogene 2	pseudogene	no	.	3.471	1.601	0.000	0.153(1462)	0.212(149)	0(0)	non tumor-specific	nAS	no
UN_BTBD7_LS0028	chr14:93331391|93332304:-	BTBD7	BTB domain containing 7	protein coding gene	no	.	2.278	0.491	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
FBXO34_LS012	chr14:55355222|55361733:+	FBXO34	F-box protein 34	protein coding gene	no	ENST00000555280.1	0.299	0.157	0.890	0.063(608)	0.057(40)	0.154(2675)	non tumor-specific	nAS	yes
UN_LPP_LS0029	chr3:188191464|188208200:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	.	0.722	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ZWINT_LS007	chr10:56358724|56358805:-	ZWINT	ZW10 interacting kinetochore protein	protein coding gene	no	ENST00000373944.7;ENST00000494312.5;ENST00000395405.5;ENST00000318387.6;ENST00000467523.1	33.122	5.981	3.988	0.994(9524)	0.98(688)	0.891(15481)	non tumor-specific	alt_3prime	yes
GPR132_LS005	chr14:105052102|105057167:-	GPR132	G protein-coupled receptor 132	protein coding gene	yes	ENST00000392585.2;ENST00000392585.2	1.852	1.041	1.029	0.494(4733)	0.491(345)	0.358(6218)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPL7P6_UP_LS0002	chr12:18773390|18796434:+	RPL7P6	ribosomal protein L7 pseudogene 6	pseudogene	no	.	3.710	0.079	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
MYNN_LS008	chr3:169779561|169780590:+	MYNN	myoneurin	protein coding gene	no	ENST00000349841.9;ENST00000602751.5;ENST00000356716.8;ENST00000544106.5;ENST00000602391.1	15.418	10.623	21.406	0.983(9414)	0.997(700)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip	yes
MTMR10_LS007	chr15:30946771|30947130:-	MTMR10	myotubularin related protein 10	protein coding gene	no	ENST00000566981.1	0.441	0.370	0.666	0.695(6658)	0.793(557)	0.033(566)	non tumor-specific	alt_3prime	yes
STRBP_LS016	chr9:123147054|123147778:-	STRBP	spermatid perinuclear RNA binding protein	protein coding gene	no	ENST00000447404.6;ENST00000348403.9;ENST00000360998.3;ENST00000407982.6	44.076	24.992	11.307	0.961(9205)	0.974(684)	0.973(16921)	non tumor-specific	nAS	yes
UN_C6orf48_UP_LS0280	chr6:31817334|31829472:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	39.601	7.736	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
UMODL1_LS016	chr21:42104087|42109562:+	UMODL1	uromodulin like 1	protein coding gene	no	ENST00000400427.5;ENST00000400424.6;ENST00000408989.6;ENST00000408910.6	2.405	0.218	0.741	0.01(98)	0.009(6)	0.037(644)	non tumor-specific	nAS	yes
KRT17P5_LS013	chr17:18424637|18424794:+	KRT17P5	keratin 17 pseudogene 5	pseudogene	no	ENST00000445433.5;ENST00000444070.3;ENST00000332088.7;ENST00000583394.2	0.125	0.032	0.797	0.089(853)	0.066(46)	0.031(534)	non tumor-specific	nAS	yes
AC044839.2_LS002	chr11:45751208|45751724:-	AC044839.2	-	lncRNA gene	no	ENST00000531982.1	0.415	0.023	0.637	0.009(85)	0.006(4)	0.003(48)	non tumor-specific	nAS	yes
UN_ESR1_LS0082	chr6:152033122|152083447:-	ESR1	estrogen receptor 1	protein coding gene	yes	.	2.831	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_P4HB_LS0201	chr17:81844080|81845183:+	P4HB	prolyl 4-hydroxylase subunit beta	protein coding gene	no	.	16.308	8.267	0.000	0.034(322)	0.019(13)	0(0)	non tumor-specific	nAS	no
DCAF5_LS022	chr14:69122360|69152944:-	DCAF5	DDB1 and CUL4 associated factor 5	protein coding gene	no	ENST00000554681.1;ENST00000554681.1	0.086	0.140	2.401	0.785(7523)	0.902(633)	0.842(14641)	non tumor-specific	alt_5prime;exon_skip	yes
UBXN11_LS030	chr1:26301024|26301694:-	UBXN11	UBX domain protein 11	protein coding gene	no	ENST00000314675.11;ENST00000472155.5;ENST00000374221.7;ENST00000374222.5;ENST00000421827.2	2.873	1.498	7.092	0.96(9196)	0.939(659)	0.961(16696)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TAB3_LS0009	chrX:30834574|30842966:-	TAB3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein coding gene	no	.	1.711	0.040	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHD3_LS0037	chr17:7901375|7902585:+	CHD3	chromodomain helicase DNA binding protein 3	protein coding gene	no	.	11.414	4.455	0.000	0.006(61)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
DDC_LS001	chr7:50458843|50459640:-	DDC	dopa decarboxylase	protein coding gene	no	ENST00000495320.1	0.148	0.092	0.716	0.172(1645)	0.248(174)	0.004(75)	non tumor-specific	nAS	yes
DDOST_LS012	chr1:20655779|20660881:-	DDOST	dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit	protein coding gene	no	ENST00000464364.1	0.206	0.212	0.665	0.942(9022)	0.947(665)	0.089(1548)	non tumor-specific	exon_skip	yes
TGFB2_LS009	chr1:218437496|218441204:+	TGFB2	transforming growth factor beta 2	protein coding gene	no	ENST00000366930.8;ENST00000366929.4;ENST00000479322.1	8.801	7.754	5.992	0.748(7165)	0.85(597)	0.887(15419)	non tumor-specific	nAS	yes
SCAF11_LS008	chr12:45925074|45928653:-	SCAF11	SR-related CTD associated factor 11	protein coding gene	no	.;.	2.038	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LETMD1_LS0003	chr12:51049185|51055835:+	LETMD1	LETM1 domain containing 1	protein coding gene	yes	.	3.637	0.719	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
NAGK_LS038	chr2:71073043|71073482:+	NAGK	N-acetylglucosamine kinase	protein coding gene	no	.;.	1.164	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC007405.3_LS0010	chr2:170775953|170777147:+	AC007405.3	-	lncRNA gene	no	.	1.073	0.157	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PRRC2B_LS001	chr9:131373731|131430090:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	ENST00000646130.1	1.406	0.236	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	yes
UN_FIGNL2_LS0005	chr12:51840295|51844861:-	FIGNL2	fidgetin like 2	protein coding gene	no	.	2.838	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SERPINH1_LS0139	chr11:75572140|75572164:+	SERPINH1	serpin family H member 1	protein coding gene	no	.	447.084	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
FAHD2B_LS007	chr2:97085861|97090109:-	FAHD2B	fumarylacetoacetate hydrolase domain containing 2B	protein coding gene	no	.;.	2.932	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AC007389.1_LS005	chr2:65483152|65691782:+	AC007389.1	-	lncRNA gene	no	ENST00000606978.5	1.864	0.203	0.866	0.005(46)	0.003(2)	0.145(2525)	non tumor-specific	nAS	yes
CNTNAP2_LS010	chr7:147300290|147395609:+	CNTNAP2	contactin associated protein 2	protein coding gene	yes	ENST00000361727.7;ENST00000649351.1;ENST00000637694.1;ENST00000638117.1;ENST00000636870.1;ENST00000637825.1	6.105	2.952	2.200	0.09(867)	0.057(40)	0.164(2846)	non tumor-specific	nAS	yes
PI4KA_LS073	chr22:20834655|20838615:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000485963.5;ENST00000449120.1	26.539	24.325	17.839	0.906(8677)	0.973(683)	0.976(16967)	non tumor-specific	exon_skip	yes
SNX1_LS016	chr15:64127806|64129873:+	SNX1	sorting nexin 1	protein coding gene	no	ENST00000560260.5	0.032	0.034	1.390	0.441(4223)	0.353(248)	0.649(11285)	non tumor-specific	alt_3prime	yes
UN_OVOL2_LS0077	chr20:18023661|18024599:-	OVOL2	ovo like zinc finger 2	protein coding gene	no	.	2.519	1.063	0.000	0.014(131)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
LINC00298_LS006	chr2:7979326|8277739:-	LINC00298	long intergenic non-protein coding RNA 298	lncRNA gene	no	ENST00000456681.1	0.806	0.000	0.878	0.003(24)	0(0)	0.021(373)	non tumor-specific	nAS	yes
TBCEL_LS009	chr11:121036612|121045674:+	TBCEL	tubulin folding cofactor E like	protein coding gene	no	ENST00000528512.5;ENST00000531148.5;ENST00000524726.1	0.820	0.421	1.752	0.533(5108)	0.648(455)	0.737(12809)	non tumor-specific	exon_skip	yes
MTIF2_LS006	chr2:55243668|55244155:-	MTIF2	mitochondrial translational initiation factor 2	protein coding gene	no	ENST00000418823.4	1.764	0.812	0.710	0.439(4205)	0.366(257)	0.242(4200)	non tumor-specific	alt_5prime;exon_skip	yes
SENP7_LS025	chr3:101399055|101458955:-	SENP7	SUMO specific peptidase 7	protein coding gene	no	ENST00000314261.11	0.074	0.185	1.537	0.633(6063)	0.779(547)	0.711(12358)	non tumor-specific	exon_skip	yes
UN_DPY19L1P2_LS0004	chr7:32817307|32818584:+	DPY19L1P2	DPY19L1 pseudogene 2	pseudogene	no	.	2.126	0.620	0.000	0.072(694)	0.04(28)	0(0)	non tumor-specific	nAS	no
UN_VEGFB_LS0038	chr11:64238478|64238508:-	VEGFB	vascular endothelial growth factor B	protein coding gene	no	.	7.349	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF586_LS0011	chr19:57776669|57791512:+	ZNF586	zinc finger protein 586	protein coding gene	no	.	2.809	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
STC1_LS002	chr8:23851531|23852242:-	STC1	stanniocalcin 1	protein coding gene	no	ENST00000290271.6;ENST00000524323.1	22.684	28.319	7.282	0.875(8382)	0.925(649)	0.811(14096)	non tumor-specific	intron_retention	yes
ATIC_LS007	chr2:215318233|215325241:+	ATIC	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein coding gene	no	ENST00000444305.5	0.572	0.697	0.742	0.522(4999)	0.507(356)	0.229(3979)	non tumor-specific	exon_skip	yes
ITGA1_LS031	chr5:52945035|52947345:+	ITGA1	integrin subunit alpha 1	protein coding gene	no	ENST00000282588.6;ENST00000504669.5;ENST00000506275.1	49.303	47.194	32.361	0.974(9336)	0.989(694)	0.964(16750)	non tumor-specific	exon_skip	yes
UN_AKAP7_LS0021	chr6:131169273|131184373:+	AKAP7	A-kinase anchoring protein 7	protein coding gene	no	.	1.676	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP483_UP_LS0009	chr20:35160709|35172089:+	RNA5SP483	RNA, 5S ribosomal pseudogene 483	no	no	.	1.679	0.183	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FAM83H_LS0223	chr8:143727530|143727808:-	FAM83H	family with sequence similarity 83 member H	protein coding gene	no	.	24.552	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AHNAK_LS012	chr11:62520027|62522572:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.;.	11.956	16.697	0.000	0.017(162)	0.019(13)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
EIF4G3_LS006	chr1:20827698|20829147:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000374935.7;ENST00000264211.12;ENST00000602326.5;ENST00000400422.6;ENST00000634879.1;ENST00000435383.1	36.181	22.288	43.204	0.993(9515)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_CAMKMT_LS0033	chr2:44704343|44707399:+	CAMKMT	calmodulin-lysine N-methyltransferase	protein coding gene	no	.	4.280	0.823	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
ATXN1_LS014	chr6:16753347|16754043:-	ATXN1	ataxin 1	protein coding gene	no	ENST00000244769.8;ENST00000643828.1;ENST00000492857.1	1.336	0.722	1.556	0.424(4058)	0.436(306)	0.741(12884)	non tumor-specific	exon_skip;intron_retention	yes
PLSCR1_LS003	chr3:146517167|146520166:-	PLSCR1	phospholipid scramblase 1	protein coding gene	no	ENST00000470496.1	0.184	0.442	0.756	0.543(5205)	0.581(408)	0.191(3312)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_DBH_LS0012	chr9:133656537|133656866:-	DBH	dopamine beta-hydroxylase	protein coding gene	no	.	1.066	0.148	0.000	0.016(157)	0.01(7)	0(0)	non tumor-specific	nAS	no
DNAH6_LS039	chr2:84658474|84659026:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	ENST00000389394.7;ENST00000237449.10;ENST00000602588.1	2.128	0.870	0.934	0.046(442)	0.138(97)	0.29(5047)	non tumor-specific	exon_skip	yes
FAM135A_LS039	chr6:70538401|70556750:+	FAM135A	family with sequence similarity 135 member A	protein coding gene	no	ENST00000418814.6;ENST00000505769.5;ENST00000457062.6;ENST00000361499.7;ENST00000370479.7;ENST00000194672.11;ENST00000505868.1	16.380	13.646	9.402	0.887(8502)	0.944(663)	0.956(16610)	non tumor-specific	exon_skip	yes
CAMK2G_LS030	chr10:73842541|73847225:-	CAMK2G	calcium/calmodulin dependent protein kinase II gamma	protein coding gene	no	ENST00000351293.7;ENST00000322635.7;ENST00000394762.6;ENST00000322680.7;ENST00000423381.5;ENST00000433289.5;ENST00000305762.11;ENST00000372765.5;ENST00000441192.1;ENST00000472912.5;ENST00000492020.5	15.239	19.066	38.043	0.979(9383)	0.987(693)	0.979(17019)	non tumor-specific	exon_skip	yes
MOG_LS016	chr6:29667924|29670281:+	MOG	myelin oligodendrocyte glycoprotein	protein coding gene	no	ENST00000376917.7;ENST00000376888.6;ENST00000376894.8;ENST00000416766.6;ENST00000376898.7;ENST00000485211.5;ENST00000376889.3;ENST00000376917.7;ENST00000376888.6;ENST00000376894.8;ENST00000416766.6;ENST00000376898.7;ENST00000485211.5;ENST00000376889.3;ENST00000376917.7;ENST00000376888.6;ENST00000376894.8;ENST00000416766.6;ENST00000376898.7;ENST00000485211.5;ENST00000376889.3	18.036	19.412	7.892	0.091(872)	0.007(5)	0.317(5509)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_RUNX2_LS0033	chr6:45557158|45562471:-	RUNX2	RUNX family transcription factor 2	protein coding gene	yes	.	2.511	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NONO_LS024	chrX:71294348|71296851:+	NONO	non-POU domain containing octamer binding	protein coding gene	no	ENST00000413858.5	1.695	0.194	1.292	0.947(9073)	0.927(651)	0.701(12178)	non tumor-specific	exon_skip	yes
CR936218.2_LS001	chr17:45908383|45910735:-	CR936218.2	-	lncRNA gene	no	ENST00000574252.1	0.295	0.093	3.454	0.014(136)	0.04(28)	0.021(372)	non tumor-specific	nAS	yes
PTPRG_LS015	chr3:62203950|62218851:+	PTPRG	protein tyrosine phosphatase receptor type G	protein coding gene	no	ENST00000295874.14;ENST00000474889.5	10.645	9.168	6.958	0.844(8085)	0.937(658)	0.901(15665)	non tumor-specific	exon_skip	yes
UN_RBBP6_LS0007	chr16:24540062|24540175:-	RBBP6	RB binding protein 6, ubiquitin ligase	protein coding gene	no	.	2.510	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CUBN_LS055	chr10:17088345|17100005:-	CUBN	cubilin	protein coding gene	no	ENST00000377833.9	6.009	25.304	1.257	0.086(826)	0.202(142)	0.536(9325)	non tumor-specific	nAS	yes
UN_DHRS4_LS0004	chr14:23954033|23954748:-	DHRS4	dehydrogenase/reductase 4	protein coding gene	no	.	1.782	0.659	0.000	0.159(1524)	0.134(94)	0(0)	non tumor-specific	nAS	no
WRN_LS007	chr8:31068327|31076173:+	WRN	WRN RecQ like helicase	protein coding gene	no	ENST00000298139.5	3.651	1.661	2.859	0.743(7115)	0.858(602)	0.86(14940)	non tumor-specific	alt_3prime;exon_skip	yes
AC245041.1_LS001	chr10:47970497|47973126:-	AC245041.1	-	lncRNA gene	no	ENST00000619523.1	0.240	0.165	0.633	0.046(440)	0.047(33)	0.005(84)	non tumor-specific	nAS	yes
UN_FAM185A_UP_LS0016	chr7:102578191|102677261:+	FAM185A	family with sequence similarity 185 member A	protein coding gene	no	.	1.443	0.710	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC107214.1_LS002	chr4:183497669|183504176:-	AC107214.1	-	lncRNA gene	no	ENST00000457303.3	0.361	0.204	0.799	0.131(1259)	0.115(81)	0.321(5571)	non tumor-specific	nAS	yes
UN_SLC30A8_LS0020	chr8:117106115|117107616:-	SLC30A8	solute carrier family 30 member 8	protein coding gene	no	.	3.406	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
DNMBP_LS003	chr10:99884209|99885687:-	DNMBP	dynamin binding protein	protein coding gene	no	ENST00000543621.6;ENST00000636706.1;ENST00000324109.8	25.716	23.047	13.359	0.961(9211)	0.987(693)	0.971(16884)	non tumor-specific	nAS	yes
PDPN_LS006	chr1:13584341|13585593:+	PDPN	podoplanin	protein coding gene	no	.;.	0.338	0.060	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_DENND1B_LS0032	chr1:197735796|197754549:-	DENND1B	DENN domain containing 1B	protein coding gene	no	.	1.199	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_HSP90AB1_LS0138	chr6:44252222|44253210:-	HSP90AB1	heat shock protein 90 alpha family class B member 1	protein coding gene	no	.	6.790	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SIX5_LS0017	chr19:45765733|45765935:+	SIX5	SIX homeobox 5	protein coding gene	no	.	1.643	0.565	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZSCAN9_LS0007	chr6:28227837|28230318:+	ZSCAN9	zinc finger and SCAN domain containing 9	protein coding gene	no	.	1.965	0.394	0.000	0.005(44)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLC30A3_LS013	chr2:27263459|27264010:-	SLC30A3	solute carrier family 30 member 3	protein coding gene	no	ENST00000424577.5	0.476	0.000	0.779	0.001(12)	0(0)	0.036(633)	non tumor-specific	exon_skip	yes
AC016766.1_LS002	chr2:163869252|163950181:-	AC016766.1	-	lncRNA gene	no	ENST00000429636.1	0.167	0.000	0.663	0(3)	0(0)	0.005(87)	non tumor-specific	nAS	yes
UN_IL32_LS0168	chr16:3069377|3081839:-	IL32	interleukin 32	protein coding gene	no	.	5.055	1.021	0.000	0.004(34)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_P2RY2_LS0003	chr11:73218504|73227981:+	P2RY2	purinergic receptor P2Y2	protein coding gene	no	.	1.138	1.005	0.000	0.059(569)	0.044(31)	0(0)	non tumor-specific	alt_5prime	no
UN_AL355102.2_LS0259	chr14:96256300|96263673:+	AL355102.2	-	protein coding gene	no	.	3.666	2.365	0.000	0.009(91)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_DHX8_LS0043	chr17:43525422|43525527:+	DHX8	DEAH-box helicase 8	protein coding gene	no	.	3.259	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FHL1_LS0003	chrX:136201263|136210510:-	FHL1	hemophagocytic lymphohistiocytosis 1	protein coding gene	yes	.	2.735	1.868	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CTSO_UP_LS0005	chr4:156002463|156010106:-	CTSO	cathepsin O	protein coding gene	no	.	5.250	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
ABR_LS052	chr17:1125367|1153810:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	ENST00000574632.5	1.032	0.189	0.882	0.028(266)	0.009(6)	0.107(1857)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
TBC1D10A_LS011	chr22:30300661|30304531:-	TBC1D10A	TBC1 domain family member 10A	protein coding gene	no	ENST00000490449.1	0.181	0.106	0.683	0.093(890)	0.12(84)	0.078(1360)	non tumor-specific	nAS	yes
AP3M2_LS026	chr8:42167810|42168961:+	AP3M2	adaptor related protein complex 3 subunit mu 2	protein coding gene	no	ENST00000518421.5;ENST00000174653.3;ENST00000396926.7;ENST00000520685.1;ENST00000521280.5;ENST00000530375.5;ENST00000520689.1	19.087	10.036	14.870	0.975(9343)	0.956(671)	0.976(16966)	non tumor-specific	exon_skip	yes
FOLH1B_LS015	chr11:89691146|89691447:+	FOLH1B	folate hydrolase 1B	pseudogene	no	ENST00000529567.6;ENST00000525540.1	1.954	6.655	1.218	0.095(909)	0.265(186)	0.071(1242)	non tumor-specific	nAS	yes
UN_CATSPERB_LS0029	chr14:91669972|91693126:-	CATSPERB	cation channel sperm associated auxiliary subunit beta	protein coding gene	no	.	2.669	0.052	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TCL1B_LS003	chr14:95690906|95691268:+	TCL1B	TCL1 family AKT coactivator B	protein coding gene	yes	ENST00000340722.7;ENST00000464815.5;ENST00000556665.1	6.385	0.884	1.106	0.065(621)	0.08(56)	0.059(1022)	non tumor-specific	nAS	yes
UN_LMLN_LS0074	chr3:198039200|198039727:+	LMLN	leishmanolysin like peptidase	protein coding gene	no	.	1.888	0.446	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
SATB1-AS1_LS026	chr3:18527326|18527785:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000627496.2	0.107	0.125	0.707	0.006(58)	0.009(6)	0.008(143)	non tumor-specific	nAS	yes
UN_CCDC134_LS0004	chr22:41801076|41808875:+	CCDC134	coiled-coil domain containing 134	protein coding gene	no	.	1.520	0.512	0.000	0.096(924)	0.087(61)	0(0)	non tumor-specific	exon_skip	no
NPIPA8_LS013	chr16:18334967|18336634:-	NPIPA8	nuclear pore complex interacting protein family member A8	protein coding gene	no	ENST00000525596.5	1.511	0.758	0.758	0.851(8155)	0.816(573)	0.116(2012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MCL1_UP_LS0005	chr1:150592542|150592863:-	MCL1	MCL1 apoptosis regulator, BCL2 family member	protein coding gene	yes	.	3.461	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
REXO1_LS019	chr19:1823785|1825839:-	REXO1	RNA exonuclease 1 homolog	protein coding gene	no	ENST00000170168.8;ENST00000170168.8	22.060	13.465	15.924	0.967(9267)	0.98(688)	0.978(17003)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SEPT2_LS001	chr2:241315610|241316422:+	SEPT2	septin 6	protein coding gene	no	ENST00000428524.5	0.072	0.021	0.640	0.249(2384)	0.292(205)	0.088(1537)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AP000679.1_UP_LS0004	chr11:119729853|119746313:+	AP000679.1	-	lncRNA gene	no	.	3.009	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GTSE1_LS013	chr22:46326654|46329358:+	GTSE1	G2 and S-phase expressed 1	protein coding gene	no	.;.	1.406	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
TPO_LS024	chr2:1436384|1453694:+	TPO	thyroid peroxidase	protein coding gene	no	ENST00000345913.8;ENST00000329066.8;ENST00000382201.7;ENST00000423320.5;ENST00000346956.7;ENST00000382198.5;ENST00000422464.5;ENST00000345913.8;ENST00000329066.8;ENST00000382201.7;ENST00000423320.5;ENST00000346956.7;ENST00000382198.5;ENST00000422464.5	7.551	163.914	3.300	0.076(731)	0.259(182)	0.645(11207)	non tumor-specific	alt_5prime;exon_skip	yes
MYO18A_LS053	chr17:29118440|29119335:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000527372.6;ENST00000533112.5;ENST00000531253.5;ENST00000628822.2;ENST00000530254.6;ENST00000588791.1	21.913	14.404	26.236	0.921(8822)	0.979(687)	0.978(17003)	non tumor-specific	alt_3prime	yes
FRY_LS008	chr13:32031865|32078834:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	2.132	1.216	1.283	0.241(2310)	0.426(299)	0.504(8765)	non tumor-specific	nAS	yes
UN_CSGALNACT2_LS0012	chr10:43155810|43160494:+	CSGALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	1.212	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZNF233_LS007	chr19:44266961|44267380:+	ZNF233	zinc finger protein 233	protein coding gene	no	ENST00000589522.1	0.210	0.100	1.025	0.117(1120)	0.127(89)	0.106(1835)	non tumor-specific	alt_3prime	yes
AL162586.1_LS001	chr9:127817343|127817759:+	AL162586.1	-	lncRNA gene	no	ENST00000439298.5	1.894	0.131	2.313	0.029(275)	0.017(12)	0.757(13164)	non tumor-specific	nAS	yes
UN_KRT6C_UP_LS0001	chr12:52487880|52515148:-	KRT6C	keratin 6C	protein coding gene	no	.	467.093	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC092042.3_LS0017	chr3:42841770|42851296:+	AC092042.3	-	protein coding gene	no	.	0.887	0.195	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CDK10_LS0004	chr16:89682795|89685301:-	CDK10	cyclin dependent kinase 10	protein coding gene	no	.	4.226	1.060	0.000	0.015(144)	0.01(7)	0(0)	non tumor-specific	nAS	no
ENO3_LS014	chr17:4952890|4953051:+	ENO3	enolase 3	protein coding gene	no	ENST00000520221.5;ENST00000522798.5;ENST00000522301.5;ENST00000521811.5;ENST00000519602.5;ENST00000323997.10;ENST00000519834.5;ENST00000522249.5;ENST00000521659.5;ENST00000518175.1	5.863	14.595	10.680	0.884(8468)	0.899(631)	0.976(16962)	non tumor-specific	exon_skip	yes
OFD1_LS005	chrX:13735346|13736656:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	.;.	1.262	0.181	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GDA_LS004	chr9:72194158|72195504:+	GDA	solute carrier family 25 member 16	protein coding gene	no	ENST00000477618.1	0.002	0.000	0.891	0(1)	0(0)	0.001(11)	non tumor-specific	nAS	yes
UN_APH1A_UP_LS0006	chr1:150308571|150309246:-	APH1A	aph-1 homolog A, gamma-secretase subunit	protein coding gene	no	.	2.964	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAR2P2_LS003	chr2:130419245|130425091:-	FAR2P2	fatty acyl-CoA reductase 2 pseudogene 2	pseudogene	no	ENST00000424873.5;ENST00000449066.5;ENST00000430785.1;ENST00000423905.5;ENST00000433703.5;ENST00000413041.5;ENST00000438056.1	1.433	1.388	3.334	0.574(5498)	0.806(566)	0.775(13473)	non tumor-specific	nAS	yes
NUP155_LS025	chr5:37331795|37333463:-	NUP155	nucleoporin 155	protein coding gene	no	ENST00000231498.7;ENST00000381843.6;ENST00000513532.1	16.095	6.266	5.221	0.897(8597)	0.942(661)	0.937(16292)	non tumor-specific	exon_skip	yes
UN_PLAUR_LS0026	chr19:43669183|43670026:+	PLAUR	plasminogen activator, urokinase receptor	protein coding gene	no	.	2.238	0.694	0.000	0.009(90)	0.02(14)	0(0)	non tumor-specific	nAS	no
DOCK7_LS027	chr1:62505816|62507962:-	DOCK7	dedicator of cytokinesis 7	protein coding gene	no	ENST00000251157.10;ENST00000454575.6;ENST00000635983.1;ENST00000340370.10;ENST00000637255.1;ENST00000634264.1;ENST00000635123.1;ENST00000635253.1;ENST00000637208.1;ENST00000635286.1	15.090	9.814	13.619	0.941(9012)	0.976(685)	0.95(16521)	non tumor-specific	exon_skip	yes
UN_JUP_LS0041	chr17:41755020|41755159:+	JUP	junction plakoglobin	protein coding gene	yes	.	21.329	5.851	0.000	0.021(205)	0.006(4)	0(0)	non tumor-specific	nAS	no
KIF20B_LS015	chr10:89719706|89723964:+	KIF20B	kinesin family member 20B	protein coding gene	no	ENST00000260753.8;ENST00000371728.7	6.483	1.840	1.413	0.647(6195)	0.618(434)	0.604(10504)	non tumor-specific	alt_3prime	yes
ABCA2_LS026	chr9:137013563|137013832:-	ABCA2	ATP binding cassette subfamily A member 2	protein coding gene	no	ENST00000341511.10;ENST00000371605.7;ENST00000265662.9;ENST00000614293.4;ENST00000479446.5;ENST00000459850.5;ENST00000487109.5;ENST00000488535.2	19.985	14.828	33.088	0.95(9098)	0.979(687)	0.978(16992)	non tumor-specific	nAS	yes
UN_TCTN1_LS0025	chr12:110642389|110644992:+	TCTN1	tectonic family member 1	protein coding gene	no	.	4.078	0.167	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PDPK2P_LS004	chr16:2622765|2633739:-	PDPK2P	3-phosphoinositide dependent protein kinase 2, pseudogene	pseudogene	no	ENST00000382326.5;ENST00000562415.2	6.790	7.022	0.679	0.865(8288)	0.932(654)	0.054(942)	non tumor-specific	nAS	yes
P4HTM_LS006	chr3:49001562|49002500:+	P4HTM	prolyl 4-hydroxylase, transmembrane	protein coding gene	no	ENST00000444213.5	0.219	0.105	2.442	0.887(8497)	0.892(626)	0.876(15232)	non tumor-specific	alt_5prime	yes
USP47_LS027	chr11:11943112|11947945:+	USP47	ubiquitin specific peptidase 47	protein coding gene	no	ENST00000339865.9;ENST00000527733.5;ENST00000399455.2;ENST00000531513.5	55.570	41.307	54.459	0.99(9483)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_UBXN11_LS0031	chr1:26286037|26292256:-	UBXN11	UBX domain protein 11	protein coding gene	no	.	0.906	0.034	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PDAP1_LS0046	chr7:99396267|99396388:+	PDAP1	PDGFA associated protein 1	protein coding gene	no	.	4.938	0.354	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
STON2_LS004	chr14:81278739|81306632:-	STON2	stonin 2	protein coding gene	no	ENST00000556280.1	0.990	0.359	0.713	0.103(988)	0.09(63)	0.088(1533)	non tumor-specific	exon_skip	yes
DNAH2_LS065	chr17:7801710|7804256:+	DNAH2	dynein axonemal heavy chain 2	protein coding gene	no	.;.	1.206	0.294	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL136382.1_UP_LS0004	chr1:86329510|86330076:-	AL136382.1	-	lncRNA gene	no	.	4.156	0.000	0.000	0.007(71)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC018816.1_LS0014	chr3:4885788|4886972:-	AC018816.1	-	lncRNA gene	no	.	4.264	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_5prime	no
C5orf64_LS009	chr5:61750544|61751670:+	C5orf64	chromosome 5 open reading frame 64	lncRNA gene	no	ENST00000507461.1	0.636	0.064	1.464	0.016(151)	0.003(2)	0.131(2272)	non tumor-specific	exon_skip	yes
AC108062.1_LS002	chr4:128300221|128302962:+	AC108062.1	-	lncRNA gene	no	ENST00000505133.5;ENST00000509834.6	0.520	0.035	0.883	0.025(243)	0.026(18)	0.37(6428)	non tumor-specific	nAS	yes
ECPAS_LS045	chr9:111428161|111430547:-	ECPAS	Ecm29 proteasome adaptor and scaffold	protein coding gene	no	ENST00000338205.9;ENST00000259335.8;ENST00000602447.5	38.409	30.882	27.187	0.914(8757)	0.981(689)	0.974(16936)	non tumor-specific	nAS	yes
CHTOP_LS013	chr1:153638448|153642246:+	CHTOP	chromatin target of PRMT1	protein coding gene	no	ENST00000368694.7;ENST00000403433.5;ENST00000368687.1;ENST00000368694.7;ENST00000403433.5;ENST00000368687.1	78.469	38.037	35.018	0.998(9562)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CCDC74A_LS0016	chr2:131530827|131531669:+	CCDC74A	coiled-coil domain containing 74A	protein coding gene	no	.	3.166	0.266	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CIDECP_LS005	chr3:10023747|10026041:-	CIDECP	cell death inducing DFFA like effector c pseudogene 1	pseudogene	no	ENST00000432401.5;ENST00000335507.9;ENST00000424691.1;ENST00000424471.1;ENST00000445082.1	23.605	12.888	19.197	0.922(8832)	0.959(673)	0.979(17017)	non tumor-specific	nAS	yes
TRIM35_LS011	chr8:27298559|27310801:-	TRIM35	tripartite motif containing 35	protein coding gene	yes	ENST00000305364.8;ENST00000519219.1	11.813	8.405	9.452	0.945(9054)	0.986(692)	0.969(16847)	non tumor-specific	exon_skip	yes
SLC27A1_LS009	chr19:17486957|17487100:+	SLC27A1	solute carrier family 27 member 1	protein coding gene	no	ENST00000598424.5	0.268	0.260	1.147	0.059(570)	0.04(28)	0.567(9847)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRBV7-2_LS001	chr7:142352914|142353061:+	TRBV7-2	T cell receptor beta variable 7-2	no	no	ENST00000634605.1	7.427	3.127	1.412	0.47(4503)	0.54(379)	0.347(6036)	non tumor-specific	nAS	yes
UN_PARP10_LS0267	chr8:143992926|143992967:-	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	57.286	3.865	0.000	0.021(205)	0.007(5)	0(0)	non tumor-specific	nAS	no
KIAA1551_LS002	chr12:31959900|31960777:+	KIAA1551	retroelement silencing factor 1	protein coding gene	no	ENST00000535606.1	0.436	0.332	0.775	0.436(4173)	0.409(287)	0.291(5053)	non tumor-specific	alt_5prime	yes
UN_TMSB4X_LS0016	chrX:12976349|12976871:-	TMSB4X	thymosin beta 4 X-linked	protein coding gene	no	.	4.307	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCAL1_LS002	chr2:216412648|216413856:+	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	protein coding gene	no	ENST00000357276.8	2.300	1.710	3.092	0.909(8707)	0.949(666)	0.91(15821)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC016924.1_LS0008	chr3:126279008|126288013:+	AC016924.1	-	lncRNA gene	no	.	1.268	0.503	0.000	0.003(29)	0.009(6)	0(0)	non tumor-specific	nAS	no
PARVB_LS001	chr22:43999411|43999534:+	PARVB	parvin beta	protein coding gene	no	ENST00000406477.7	0.728	0.347	1.057	0.033(313)	0.033(23)	0.239(4147)	non tumor-specific	intron_retention	yes
UN_FABP7_UP_LS0007	chr6:122749334|122761861:+	FABP7	fatty acid binding protein 7	protein coding gene	no	.	3.808	1.105	0.000	0.043(416)	0.004(3)	0(0)	non tumor-specific	nAS	no
TG_LS036	chr8:132941542|132948776:+	TG	thyroglobulin	protein coding gene	no	ENST00000220616.8;ENST00000523756.5	167.270	511.951	1.949	0.113(1085)	0.154(108)	0.706(12271)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SPATA5_LS0024	chr4:122979386|123019162:+	SPATA5	spermatogenesis associated 5	protein coding gene	no	.	1.712	0.124	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SIRPG_LS003	chr20:1630306|1630695:-	SIRPG	signal regulatory protein gamma	protein coding gene	no	ENST00000478145.6	0.080	0.009	0.663	0.07(670)	0.038(27)	0.001(19)	non tumor-specific	nAS	yes
UN_CHFR_LS0036	chr12:132840685|132840749:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	6.397	1.075	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
HACD4_LS001	chr9:21007119|21008021:-	HACD4	3-hydroxyacyl-CoA dehydratase 4	protein coding gene	yes	ENST00000495827.2	6.229	4.427	13.295	0.844(8087)	0.929(652)	0.95(16516)	non tumor-specific	alt_3prime;exon_skip	yes
COL4A1_LS042	chr13:110207489|110208849:-	COL4A1	collagen type IV alpha 1 chain	protein coding gene	no	ENST00000375820.9;ENST00000649738.1;ENST00000543140.6;ENST00000647797.1;ENST00000647632.1;ENST00000615732.2	129.202	66.172	33.106	0.951(9109)	0.983(690)	0.922(16029)	non tumor-specific	nAS	yes
UN_AL354793.1_LS0001	chrX:56618513|56623566:+	AL354793.1	-	lncRNA gene	no	.	2.065	2.572	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SHMT2_LS009	chr12:57230420|57230803:+	SHMT2	serine hydroxymethyltransferase 2	protein coding gene	no	ENST00000554656.5;ENST00000553474.5;ENST00000555116.5	0.022	0.019	0.760	0.74(7087)	0.597(419)	0.086(1487)	non tumor-specific	alt_5prime;intron_retention	yes
RPL13AP17_LS003	chr7:78348425|78350127:+	RPL13AP17	ribosomal protein L13a pseudogene 17	pseudogene	no	ENST00000450028.5;ENST00000428436.1	1.592	0.968	0.872	0.021(203)	0.15(105)	0.034(594)	non tumor-specific	nAS	yes
AL136980.1_LS001	chr9:5719498|5720180:-	AL136980.1	-	lncRNA gene	no	ENST00000426764.1	0.410	0.295	1.300	0.331(3169)	0.466(327)	0.604(10493)	non tumor-specific	nAS	yes
UN_THADA_LS0055	chr2:43320540|43397971:-	THADA	THADA armadillo repeat containing	protein coding gene	no	.	1.130	0.362	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL929288.2_UP_LS0004	chr1:188595185|188643026:+	AL929288.2	-	pseudogene	no	.	3.523	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RYR3_LS091	chr15:33825676|33826252:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000635790.1	3.317	1.196	2.142	0.033(318)	0.048(34)	0.489(8496)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CYP21A2_UP_LS0360	chr6:31999539|32032044:+	CYP21A2	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	.	2.898	0.064	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
GM2A_LS008	chr5:151267480|151270150:+	GM2A	GM2 ganglioside activator	protein coding gene	no	.;.	15.634	3.131	0.000	0.009(88)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CCM2_LS034	chr7:45069961|45073460:+	CCM2	CCM2 scaffold protein	protein coding gene	no	ENST00000488727.5;ENST00000488727.5	1.615	1.995	2.761	0.89(8524)	0.912(640)	0.869(15107)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CBFB_LS016	chr16:67082339|67098710:+	CBFB	core-binding factor subunit beta	protein coding gene	yes	ENST00000561924.6;ENST00000290858.10;ENST00000561924.6;ENST00000290858.10	25.687	12.107	19.154	0.97(9289)	0.963(676)	0.978(17003)	non tumor-specific	alt_5prime;exon_skip	yes
TCEAL3_LS013	chrX:103610607|103625318:+	TCEAL3	transcription elongation factor A like 3	protein coding gene	no	ENST00000477014.1	0.169	0.165	0.746	0.007(67)	0.013(9)	0.169(2939)	non tumor-specific	exon_skip	yes
CEACAM1_LS019	chr19:42516865|42521267:-	CEACAM1	CEA cell adhesion molecule 1	protein coding gene	yes	ENST00000599389.1	0.127	0.318	0.833	0.287(2754)	0.396(278)	0.08(1392)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PKM_LS0205	chr15:72199613|72206731:+	PKM	pyruvate kinase M1/2	protein coding gene	no	.	1.075	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAEL_LS0016	chr1:166994069|166996025:+	MAEL	maelstrom spermatogenic transposon silencer	protein coding gene	no	.	7.053	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
SAP130_LS022	chr2:128017915|128026181:-	SAP130	splicing factor 3b subunit 3	protein coding gene	no	ENST00000357702.9;ENST00000259235.7;ENST00000643581.1;ENST00000259234.10;ENST00000424298.5;ENST00000450957.1	13.266	7.911	8.341	0.918(8793)	0.963(676)	0.967(16803)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_LTBP2_LS0031	chr14:74500727|74500847:+	LTBP2	latent transforming growth factor beta binding protein 3	protein coding gene	no	.	1.649	0.076	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCDC162P_LS0025	chr6:109254648|109255375:+	CCDC162P	coiled-coil domain containing 162, pseudogene	pseudogene	no	.	4.487	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
OPHN1_LS017	chrX:68201710|68206573:-	OPHN1	oligophrenin 1	protein coding gene	no	ENST00000355520.5;ENST00000467444.1	4.303	3.279	4.447	0.657(6294)	0.835(586)	0.895(15561)	non tumor-specific	nAS	yes
UN_AC004967.1_LS0008	chr7:97972024|97972135:-	AC004967.1	-	pseudogene	no	.	1.901	0.787	0.000	0.188(1797)	0.141(99)	0(0)	non tumor-specific	nAS	no
UN_HNRNPUL2-BSCL2_LS0011	chr11:62690521|62690622:-	HNRNPUL2-BSCL2	HNRNPUL2-BSCL2 readthrough (NMD candidate)	protein coding gene	no	.	15.394	1.378	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AP3B1_LS0042	chr5:78141319|78141814:-	AP3B1	adaptor related protein complex 3 subunit beta 1	protein coding gene	no	.	0.901	0.042	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
DLG1_LS042	chr3:197142768|197194425:-	DLG1	DLG associated protein 5	protein coding gene	yes	ENST00000422288.5;ENST00000419227.5;ENST00000453607.5	0.282	0.183	1.866	0.784(7515)	0.876(615)	0.782(13596)	non tumor-specific	exon_skip	yes
AHCYL1_LS010	chr1:110014857|110015425:+	AHCYL1	adenosylhomocysteinase like 1	protein coding gene	yes	ENST00000369799.9;ENST00000393614.8;ENST00000475081.1;ENST00000359172.3	98.757	84.486	65.691	0.981(9395)	0.991(696)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF577_LS0011	chr19:51848294|51849298:+	ZNF577	zinc finger protein 577	protein coding gene	no	.	2.200	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC003006.1_LS0026	chr19:57687945|57688030:+	AC003006.1	-	protein coding gene	no	.	3.472	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STXBP5_LS0003	chr6:147239270|147243609:+	STXBP5	syntaxin binding protein 5	protein coding gene	no	.	4.731	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ABCA3_LS020	chr16:2297539|2297766:-	ABCA3	ATP binding cassette subfamily A member 3	protein coding gene	no	ENST00000301732.9;ENST00000382381.7;ENST00000563623.5	22.438	41.735	10.298	0.759(7273)	0.882(619)	0.933(16221)	non tumor-specific	intron_retention	yes
UN_AL845331.2_LS0001	chr2:94588547|94589191:+	AL845331.2	-	protein coding gene	no	.	4.133	0.381	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IGHG1_LS0155	chr14:105742882|105742937:+	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	227.295	5.078	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_P2RY2_UP_LS0015	chr11:73198683|73200896:+	P2RY2	purinergic receptor P2Y2	protein coding gene	no	.	4.184	0.198	0.000	0.027(261)	0.004(3)	0(0)	non tumor-specific	nAS	no
TNNT2_LS042	chr1:201372155|201373214:-	TNNT2	troponin T2, cardiac type	protein coding gene	no	ENST00000367318.9;ENST00000367322.5;ENST00000491504.5;ENST00000367317.8;ENST00000360372.8;ENST00000236918.11;ENST00000367320.6;ENST00000509001.5;ENST00000438742.5;ENST00000455702.5;ENST00000422165.5;ENST00000412633.2;ENST00000494095.5;ENST00000472177.2	1.221	2.908	4.224	0.374(3582)	0.533(374)	0.817(14197)	non tumor-specific	alt_5prime;mutex_exons	yes
UN_BRD8_LS0013	chr5:138161842|138162054:-	BRD8	bromodomain containing 8	protein coding gene	no	.	11.788	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LAD1_LS0046	chr1:201381577|201381774:+	LAD1	ladinin 1	protein coding gene	no	.	2.249	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF324B_LS0007	chr19:58452496|58453696:+	ZNF324B	zinc finger protein 324B	protein coding gene	no	.	0.629	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_DYNC1I1_LS0041	chr7:96061328|96076057:+	DYNC1I1	dynein cytoplasmic 1 intermediate chain 1	protein coding gene	no	.	3.132	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
EZH2_LS012	chr7:148815546|148816684:-	EZH2	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein coding gene	yes	ENST00000492143.5;ENST00000478654.5;ENST00000460911.5;ENST00000350995.6;ENST00000320356.6;ENST00000476773.5;ENST00000483967.5	32.612	4.801	4.786	0.963(9229)	0.682(479)	0.939(16315)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PPP4R2_LS012	chr3:73063747|73064065:+	PPP4R2	protein phosphatase 4 regulatory subunit 2	protein coding gene	no	ENST00000482242.5	0.237	0.474	0.781	0.526(5036)	0.607(426)	0.371(6457)	non tumor-specific	alt_3prime;exon_skip	yes
MCRIP2_LS021	chr16:646608|647417:+	MCRIP2	MAPK regulated corepressor interacting protein 2	protein coding gene	no	ENST00000491999.5;ENST00000615744.4;ENST00000620462.4;ENST00000619674.1	44.051	27.659	27.239	0.993(9518)	0.997(700)	0.979(17009)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RAB11A_LS011	chr15:65877955|65879725:+	RAB11A	RAB11A, member RAS oncogene family	protein coding gene	yes	ENST00000565075.5	5.102	6.228	0.799	0.989(9475)	0.99(695)	0.417(7251)	non tumor-specific	alt_3prime;exon_skip	yes
SLC47A1_LS021	chr17:19555690|19555995:+	SLC47A1	solute carrier family 47 member 1	protein coding gene	no	ENST00000575377.5;ENST00000575377.5	0.261	0.124	0.961	0.308(2949)	0.513(360)	0.194(3370)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CDC40_LS011	chr6:110210803|110212133:+	CDC40	cell division cycle 40	protein coding gene	no	ENST00000368932.5;ENST00000307731.1;ENST00000368930.5;ENST00000368932.5;ENST00000307731.1;ENST00000368930.5;ENST00000368932.5;ENST00000307731.1;ENST00000368930.5	31.247	25.398	14.234	0.957(9172)	0.983(690)	0.975(16941)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TPTE2P6_LS008	chr13:24594363|24595789:+	TPTE2P6	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6	pseudogene	no	ENST00000445572.5;ENST00000450973.1	3.689	0.355	0.971	0.047(446)	0.027(19)	0.323(5611)	non tumor-specific	nAS	yes
KCNMA1_LS022	chr10:76944965|76949142:-	KCNMA1	potassium calcium-activated channel subfamily M alpha 1	protein coding gene	no	ENST00000604624.6;ENST00000639601.1;ENST00000638991.1;ENST00000639913.1;ENST00000639205.1;ENST00000639486.1;ENST00000639498.1;ENST00000640523.1;ENST00000372443.6;ENST00000638223.1;ENST00000639344.1;ENST00000638848.1;ENST00000639090.1;ENST00000639489.1;ENST00000639069.1;ENST00000639657.1;ENST00000372408.7;ENST00000639995.1;ENST00000639483.1;ENST00000639691.1;ENST00000372421.10;ENST00000640570.1;ENST00000372437.6;ENST00000638895.1;ENST00000457953.6;ENST00000404771.8;ENST00000638351.1;ENST00000372440.6;ENST00000638306.1;ENST00000640182.1;ENST00000638606.1;ENST00000639591.1;ENST00000640605.1;ENST00000638203.1;ENST00000639968.1;ENST00000372403.9;ENST00000640626.1;ENST00000639851.1;ENST00000640934.1;ENST00000640029.1;ENST00000404857.6;ENST00000640093.1;ENST00000638252.1;ENST00000639544.1;ENST00000640807.1;ENST00000434208.6;ENST00000286627.10;ENST00000286628.13;ENST00000406533.7;ENST00000354353.9;ENST00000638283.1;ENST00000639730.1;ENST00000639370.1;ENST00000639716.1;ENST00000640141.1;ENST00000638754.1;ENST00000638632.1;ENST00000640969.1;ENST00000638751.1;ENST00000639406.1;ENST00000639823.1;ENST00000640834.1;ENST00000626620.3;ENST00000638759.1;ENST00000638575.1;ENST00000638999.1;ENST00000638514.1;ENST00000640353.1;ENST00000640773.1;ENST00000639321.1;ENST00000638370.1	4.656	9.113	10.750	0.624(5979)	0.865(607)	0.917(15947)	non tumor-specific	alt_3prime;exon_skip	yes
LINC00960_LS005	chr3:75676128|75678833:+	LINC00960	long intergenic non-protein coding RNA 960	lncRNA gene	no	ENST00000463183.1	3.591	1.423	1.509	0.352(3376)	0.457(321)	0.443(7695)	non tumor-specific	nAS	yes
UN_LINC00237_LS0007	chr20:21093852|21099413:-	LINC00237	long intergenic non-protein coding RNA 237	lncRNA gene	no	.	1.565	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL390879.1_LS0037	chrX:136925379|136940129:+	AL390879.1	-	pseudogene	no	.	1.440	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC139713.2_LS0032	chr4:143848380|143859016:+	AC139713.2	-	lncRNA gene	no	.	2.819	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC022784.1_UP_LS0001	chr8:9020464|9145251:+	AC022784.1	-	lncRNA gene	no	.	1.465	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PNN_LS006	chr14:39177687|39177841:+	PNN	pinin, desmosome associated protein	protein coding gene	yes	ENST00000216832.8	129.154	57.747	145.535	0.991(9493)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_PRIMA1_LS0031	chr14:93726006|93733563:-	PRIMA1	proline rich membrane anchor 1	protein coding gene	no	.	1.167	0.131	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MPST_LS0071	chr22:37028866|37029216:+	MPST	mercaptopyruvate sulfurtransferase	protein coding gene	yes	.	2.859	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_RHOB_LS0089	chr2:20448080|20448165:-	RHOB	ras homolog family member B	protein coding gene	yes	.	5.494	2.971	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL6A2_LS005	chr21:46112824|46114008:+	COL6A2	collagen type VI alpha 2 chain	protein coding gene	no	ENST00000300527.8;ENST00000310645.9;ENST00000409416.5;ENST00000397763.5	530.944	390.594	433.593	0.988(9462)	0.997(700)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
COL4A2_LS002	chr13:110307528|110307860:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	ENST00000360467.6;ENST00000649101.1;ENST00000480771.5;ENST00000650540.1	20.861	15.178	35.817	0.952(9120)	0.977(686)	0.929(16150)	non tumor-specific	nAS	yes
UN_SRPRA_LS0042	chr11:126263774|126266479:+	SRPRA	SRP receptor subunit alpha	protein coding gene	no	.	0.467	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PABPN1_LS0061	chr14:23325962|23326073:+	PABPN1	poly(A) binding protein nuclear 1	protein coding gene	no	.	10.739	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL28_LS0033	chr19:55386697|55387935:+	RPL28	ribosomal protein L28	protein coding gene	no	.	349.180	23.693	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	nAS	no
CDK6_LS007	chr7:92833690|92833873:-	CDK6	cyclin dependent kinase 6	protein coding gene	yes	ENST00000265734.8	0.716	0.370	0.905	0.343(3284)	0.375(263)	0.439(7628)	non tumor-specific	alt_5prime;intron_retention	yes
UN_BOK_LS0226	chr2:241573315|241573357:-	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	2.129	1.338	0.000	0.006(57)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_AC008554.1_LS0004	chr19:20440201|20471498:-	AC008554.1	-	lncRNA gene	no	.	1.849	0.392	0.000	0.016(153)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_MYO5A_UP_LS0002	chr15:52548268|52754794:-	MYO5A	myosin VA	protein coding gene	no	.	16.064	6.538	0.000	0.041(390)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_MTSS1L_LS0030	chr16:70663102|70663275:-	MTSS1L	MTSS I-BAR domain containing 2	protein coding gene	no	.	10.639	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR41_LS033	chr5:77463226|77492170:-	WDR41	WD repeat domain 41	protein coding gene	no	ENST00000507029.5	0.009	0.011	0.639	0.201(1928)	0.211(148)	0.017(289)	non tumor-specific	exon_skip	yes
PARPBP_LS007	chr12:102124041|102148235:+	PARPBP	PARP1 binding protein	protein coding gene	no	ENST00000392911.6;ENST00000392911.6	0.487	0.260	0.739	0.45(4310)	0.194(136)	0.162(2820)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC011592.1_UP_LS0047	chr3:145650093|145650518:-	AC011592.1	-	lncRNA gene	no	.	2.848	0.712	0.000	0.009(87)	0.017(12)	0(0)	non tumor-specific	nAS	no
GFER_LS001	chr16:1984476|1984747:+	GFER	growth factor, augmenter of liver regeneration	protein coding gene	no	ENST00000248114.6;ENST00000561710.1	15.063	6.503	16.180	0.918(8800)	0.932(654)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_WDR86_LS0047	chr7:151391644|151395776:-	WDR86	WD repeat domain 86	protein coding gene	no	.	2.996	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UNC93B1_LS002	chr11:67991857|67993676:-	UNC93B1	unc-93 homolog B1, TLR signaling regulator	protein coding gene	no	ENST00000227471.6;ENST00000525368.1	82.846	31.817	28.512	0.972(9308)	0.98(688)	0.978(17004)	non tumor-specific	nAS	yes
SMG1P5_LS005	chr16:30273230|30273379:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	ENST00000529428.5;ENST00000532983.1	1.997	0.667	0.661	0.546(5230)	0.603(423)	0.03(523)	non tumor-specific	nAS	yes
AL139220.2_LS008	chr1:44046122|44048358:+	AL139220.2	-	lncRNA gene	no	ENST00000609636.5;ENST00000434244.5	0.000	0.521	0.696	0(0)	0.001(1)	0.003(44)	non tumor-specific	nAS	yes
MBNL1_LS005	chr3:152269092|152335111:+	MBNL1	muscleblind like splicing regulator 1	protein coding gene	no	ENST00000493459.5	2.532	0.906	1.265	0.044(425)	0.046(32)	0.512(8908)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
AC015909.1_LS004	chr17:50212121|50213835:+	AC015909.1	-	lncRNA gene	no	ENST00000509943.1	0.847	0.000	0.612	0.006(58)	0(0)	0.041(712)	non tumor-specific	nAS	yes
PQBP1_LS005	chrX:48898093|48901190:+	PQBP1	polyglutamine binding protein 1	protein coding gene	no	.;.	4.598	0.144	0.000	0.001(5)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC006380.1_UP_LS0017	chr7:31231928|31234422:+	AC006380.1	-	pseudogene	no	.	3.120	0.228	0.000	0.008(74)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DECR2_UP_LS0010	chr16:392121|398990:+	DECR2	2,4-dienoyl-CoA reductase 2	protein coding gene	no	.	2.820	0.226	0.000	0.016(151)	0.007(5)	0(0)	non tumor-specific	nAS	no
KNSTRN_LS007	chr15:40383322|40386362:+	KNSTRN	kinetochore localized astrin (SPAG5) binding protein	protein coding gene	no	ENST00000416151.6;ENST00000249776.12;ENST00000448395.6;ENST00000560321.5;ENST00000608100.5;ENST00000561169.5;ENST00000557920.1;ENST00000560673.1	12.188	4.692	5.500	0.988(9465)	0.996(699)	0.961(16697)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TRRAP_LS015	chr7:98906255|98908728:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1	6.982	3.141	3.471	0.739(7084)	0.835(586)	0.889(15457)	non tumor-specific	alt_3prime;exon_skip	yes
KIF1C_LS008	chr17:5000848|5001222:+	KIF1C	kinesin family member 1C	protein coding gene	no	ENST00000320785.9;ENST00000574165.1	62.866	77.300	163.011	0.988(9463)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
TRPV5_LS005	chr7:142915046|142915307:-	TRPV5	transient receptor potential cation channel subfamily V member 5	protein coding gene	no	ENST00000265310.5;ENST00000439304.5	0.180	2.149	1.049	0.001(6)	0.098(69)	0.117(2030)	non tumor-specific	nAS	yes
DHX58_LS012	chr17:42105167|42107604:-	DHX58	DExH-box helicase 58	protein coding gene	no	ENST00000590637.1	0.431	0.263	1.097	0.3(2877)	0.262(184)	0.453(7870)	non tumor-specific	exon_skip	yes
IFT46_LS009	chr11:118555322|118556906:-	IFT46	intraflagellar transport 46	protein coding gene	no	ENST00000264021.7;ENST00000264020.6;ENST00000530872.5;ENST00000531201.5;ENST00000531939.5;ENST00000534156.5;ENST00000534114.5;ENST00000528378.5	34.464	26.936	26.350	0.99(9484)	0.997(700)	0.977(16975)	non tumor-specific	exon_skip	yes
CEP112_LS010	chr17:65750724|65797161:-	CEP112	centrosomal protein 112	protein coding gene	no	ENST00000580482.5;ENST00000582861.1	0.155	0.034	0.713	0.053(511)	0.095(67)	0.187(3252)	non tumor-specific	exon_skip	yes
UN_C1QC_LS0027	chr1:22644204|22647221:-	C1QC	complement C1q C chain	protein coding gene	no	.	1.628	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PLEKHG3_LS021	chr14:64732460|64732803:+	PLEKHG3	pleckstrin homology and RhoGEF domain containing G3	protein coding gene	no	ENST00000634379.1;ENST00000394691.6;ENST00000247226.12;ENST00000490180.2	26.625	21.046	28.576	0.933(8943)	0.977(686)	0.973(16918)	non tumor-specific	nAS	yes
DDC_LS004	chr7:50467315|50470073:-	DDC	dopa decarboxylase	protein coding gene	no	ENST00000357936.9;ENST00000615193.4;ENST00000617822.4;ENST00000622873.4;ENST00000431062.5;ENST00000444733.5;ENST00000426377.5;ENST00000444124.6;ENST00000430300.5;ENST00000494914.1	80.165	66.608	1.960	0.426(4085)	0.608(427)	0.282(4895)	non tumor-specific	alt_3prime;exon_skip	yes
AKTIP_LS011	chr16:53498596|53500218:-	AKTIP	AKT interacting protein	protein coding gene	yes	ENST00000394657.11;ENST00000300245.8;ENST00000570004.5;ENST00000568022.5;ENST00000563928.5;ENST00000563108.5;ENST00000565408.5;ENST00000568596.5;ENST00000566045.5;ENST00000561799.5;ENST00000570041.1	20.817	18.824	55.108	0.986(9451)	0.996(699)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ELN_LS0041	chr7:74063224|74063313:+	ELN	small integral membrane protein 6	protein coding gene	no	.	32.993	0.707	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
TYROBP_LS006	chr19:35907357|35907446:-	TYROBP	transmembrane immune signaling adaptor TYROBP	protein coding gene	no	ENST00000585901.6	0.428	1.793	0.931	0.615(5890)	0.634(445)	0.293(5095)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AL591122.1_UP_LS0001	chr1:22416970|22418218:-	AL591122.1	-	lncRNA gene	no	.	8.172	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FRK_LS0012	chr6:115956610|115967599:-	FRK	fyn related Src family tyrosine kinase	protein coding gene	yes	.	2.221	0.168	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
PUDP_LS009	chrX:7105838|7148053:-	PUDP	pseudouridine 5'-phosphatase	protein coding gene	no	ENST00000381077.9;ENST00000412827.6;ENST00000540122.5;ENST00000486446.2;ENST00000498474.2;ENST00000381077.9;ENST00000412827.6;ENST00000540122.5;ENST00000486446.2;ENST00000498474.2	9.189	6.953	5.316	0.94(9007)	0.973(683)	0.955(16605)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SLC2A10_LS0034	chr20:46728298|46729353:+	SLC2A10	solute carrier family 2 member 10	protein coding gene	no	.	1.977	0.326	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ITGB2_LS0094	chr21:44927943|44928354:+	ITGB2	integrin subunit beta 2	protein coding gene	no	.	2.373	0.091	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
KCTD3_LS011	chr1:215595471|215601867:+	KCTD3	potassium channel tetramerization domain containing 3	protein coding gene	no	ENST00000259154.8	46.385	35.687	28.707	0.974(9335)	0.993(697)	0.964(16748)	non tumor-specific	exon_skip	yes
IFT122_LS014	chr3:129451998|129469342:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000509815.1	0.078	0.031	0.695	0.123(1177)	0.151(106)	0.118(2054)	non tumor-specific	exon_skip	yes
BUD23_LS029	chr7:73694050|73697466:+	BUD23	BUD23 rRNA methyltransferase and ribosome maturation factor	protein coding gene	no	ENST00000423497.5;ENST00000423497.5	0.242	0.680	1.186	0.947(9076)	0.933(655)	0.647(11252)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARHGAP27P1-BPTFP1-KPNA2P3_LS0060	chr17:64781039|64781240:-	ARHGAP27P1-BPTFP1-KPNA2P3	ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene	lncRNA gene	no	.	1.605	0.460	0.000	0.096(921)	0.038(27)	0(0)	non tumor-specific	nAS	no
TYRP1_LS011	chr9:12708143|12708977:+	TYRP1	tyrosinase related protein 1	protein coding gene	yes	ENST00000388918.9;ENST00000381136.2;ENST00000473504.1	199.500	6.116	2.804	0.419(4014)	0.543(381)	0.442(7686)	non tumor-specific	exon_skip	yes
LINC02391_LS001	chr12:92248029|92268921:-	LINC02391	long intergenic non-protein coding RNA 2391	lncRNA gene	no	ENST00000615716.1	0.726	0.086	0.667	0.025(237)	0.014(10)	0.052(902)	non tumor-specific	nAS	yes
UN_MYH9_LS0297	chr22:36285323|36285694:+	MYH9	myosin heavy chain 9	protein coding gene	yes	.	3.351	0.348	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
NT5E_LS010	chr6:85492177|85493841:+	NT5E	5'-nucleotidase ecto	protein coding gene	no	ENST00000369651.7;ENST00000257770.7	22.675	20.526	13.707	0.893(8560)	0.949(666)	0.936(16272)	non tumor-specific	exon_skip	yes
HEATR6_LS034	chr17:60075833|60076130:-	HEATR6	HEAT repeat containing 6	protein coding gene	no	ENST00000593097.5;ENST00000591074.1	0.116	0.194	1.096	0.342(3277)	0.161(113)	0.486(8452)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ADH6_LS011	chr4:99210298|99210415:-	ADH6	alcohol dehydrogenase 6 (class V)	protein coding gene	no	ENST00000394897.5;ENST00000394899.6;ENST00000237653.11	5.927	31.130	5.342	0.203(1942)	0.346(243)	0.068(1190)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC007389.3_LS001	chr2:65589819|65590905:-	AC007389.3	-	lncRNA gene	no	ENST00000420724.1	12.818	0.000	0.618	0.003(28)	0(0)	0.004(66)	non tumor-specific	nAS	yes
HAX1_LS024	chr1:154275001|154275154:+	HAX1	HCLS1 associated protein X-1	protein coding gene	yes	ENST00000328703.11;ENST00000457918.6;ENST00000483970.6;ENST00000447768.6;ENST00000531435.5;ENST00000532105.1;ENST00000471326.5;ENST00000492550.1	239.423	129.852	153.379	0.999(9572)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TRRAP_LS029	chr7:98931665|98933241:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1	9.193	4.811	7.538	0.831(7964)	0.896(629)	0.951(16525)	non tumor-specific	nAS	yes
AC244093.5_LS002	chr17:37045968|37052255:-	AC244093.5	-	lncRNA gene	no	ENST00000619606.1	0.326	0.000	0.762	0(2)	0(0)	0.001(9)	non tumor-specific	nAS	yes
UN_AL080313.2_UP_LS0003	chr6:14432266|14448516:-	AL080313.2	-	lncRNA gene	no	.	2.255	0.406	0.000	0.004(35)	0.019(13)	0(0)	non tumor-specific	nAS	no
TMEM106A_LS009	chr17:43213045|43213190:+	TMEM106A	transmembrane protein 106A	protein coding gene	no	ENST00000541594.5	0.119	0.172	0.870	0.487(4664)	0.588(413)	0.404(7021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CTDSPL2_LS003	chr15:44427893|44458991:+	CTDSPL2	CTD small phosphatase like 2	protein coding gene	no	ENST00000558966.5	0.024	0.177	0.649	0.501(4797)	0.584(410)	0.112(1951)	non tumor-specific	alt_5prime	yes
RNF44_LS001	chr5:176529090|176529288:-	RNF44	ring finger protein 44	protein coding gene	no	ENST00000274811.8;ENST00000513029.5	55.569	26.911	36.259	0.991(9495)	0.994(698)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ZP1_LS004	chr11:60869900|60870332:+	ZP1	zona pellucida glycoprotein 1	protein coding gene	no	ENST00000278853.9	1.369	0.001	0.864	0.021(203)	0.003(2)	0.036(623)	non tumor-specific	exon_skip	yes
ZBTB8OS_LS022	chr1:32633727|32650402:-	ZBTB8OS	zinc finger and BTB domain containing 8 opposite strand	protein coding gene	no	.;.	4.691	0.225	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
TRPM7_LS008	chr15:50575789|50575869:-	TRPM7	transient receptor potential cation channel subfamily M member 7	protein coding gene	no	ENST00000646667.1;ENST00000313478.11;ENST00000560955.5;ENST00000558444.5	22.755	16.653	20.113	0.916(8772)	0.976(685)	0.974(16931)	non tumor-specific	intron_retention	yes
STAMBP_LS001	chr2:73828996|73829405:+	STAMBP	STAM binding protein	protein coding gene	no	ENST00000452725.5	0.413	0.233	0.874	0.682(6536)	0.708(497)	0.447(7772)	non tumor-specific	exon_skip;intron_retention	yes
UN_C1GALT1_UP_LS0046	chr7:7103346|7108887:+	C1GALT1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1	protein coding gene	no	.	8.150	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NOTCH2_LS0029	chr1:119915708|119915742:+	NOTCH2	notch receptor 2	protein coding gene	yes	.	3.223	0.480	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
LAT_LS025	chr16:28989839|28990189:+	LAT	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000570232.2;ENST00000570232.2	0.038	0.019	0.674	0.704(6749)	0.712(500)	0.03(523)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TYW1_LS0007	chr7:66995836|66996241:-	TYW1	tRNA-yW synthesizing protein 1 homolog	protein coding gene	no	.	0.937	7.049	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDK15_LS003	chr2:201800901|201806429:+	CDK15	cyclin dependent kinase 15	protein coding gene	no	ENST00000451080.5	0.030	0.000	0.649	0(2)	0(0)	0.027(466)	non tumor-specific	exon_skip	yes
UN_NQO1_LS0019	chr16:69711142|69711168:+	NQO1	NAD(P)H quinone dehydrogenase 1	protein coding gene	no	.	62.636	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ADAM18_LS004	chr8:39604736|39606307:+	ADAM18	ADAM metallopeptidase domain 18	protein coding gene	no	ENST00000520559.1	5.263	0.000	0.381	0.001(10)	0(0)	0.001(10)	non tumor-specific	nAS	yes
FER1L6_LS015	chr8:124013531|124017628:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	5.797	4.937	1.101	0.092(881)	0.306(215)	0.086(1492)	non tumor-specific	nAS	yes
UN_AC246787.2_UP_LS0779	chr14:105644737|105669631:+	AC246787.2	-	lncRNA gene	no	.	28.360	0.153	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NBPF26_LS0007	chr1:120793496|120793753:+	NBPF26	NBPF member 26	protein coding gene	no	.	3.097	0.407	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
DOCK5_LS001	chr8:25184951|25243674:+	DOCK5	dedicator of cytokinesis 5	protein coding gene	no	ENST00000410074.5;ENST00000481100.5;ENST00000276440.11	2.391	0.975	3.013	0.653(6255)	0.791(555)	0.865(15030)	non tumor-specific	alt_5prime;exon_skip	yes
RAD1_LS010	chr5:34915626|34918052:-	RAD1	ribonuclease A family member k6	protein coding gene	no	ENST00000341754.8	0.477	0.522	1.400	0.17(1630)	0.309(217)	0.643(11180)	non tumor-specific	alt_5prime;exon_skip	yes
MYO7A_LS049	chr11:77204229|77205462:+	MYO7A	myosin VIIA	protein coding gene	no	ENST00000409709.8;ENST00000458637.6;ENST00000409619.6;ENST00000481328.7;ENST00000458169.2	6.556	6.217	6.106	0.785(7518)	0.715(502)	0.914(15891)	non tumor-specific	alt_3prime	yes
KCNK7_LS006	chr11:65593210|65593310:-	KCNK7	potassium two pore domain channel subfamily K member 7	protein coding gene	no	ENST00000394217.6	0.289	0.087	1.464	0.244(2337)	0.145(102)	0.562(9774)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RBMS1_LS021	chr2:160367391|160367512:-	RBMS1	RNA binding motif single stranded interacting protein 1	protein coding gene	no	ENST00000392753.7	0.103	0.072	0.620	0.002(16)	0.004(3)	0.009(149)	non tumor-specific	nAS	yes
UN_CYB5A_LS0027	chr18:74291014|74291747:-	CYB5A	cytochrome b5 type A	protein coding gene	yes	.	2.823	0.645	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_LINC01630_LS0006	chr18:51483509|51500757:-	LINC01630	long intergenic non-protein coding RNA 1630	lncRNA gene	no	.	4.389	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
KIFC3_LS016	chr16:57761536|57762140:-	KIFC3	kinesin family member C3	protein coding gene	no	ENST00000465878.6;ENST00000379655.8;ENST00000445690.6;ENST00000421376.6;ENST00000541240.5;ENST00000540079.6;ENST00000543930.5;ENST00000562903.5;ENST00000564136.5;ENST00000565270.1	47.209	34.793	62.700	0.981(9402)	0.993(697)	0.976(16961)	non tumor-specific	alt_5prime;exon_skip	yes
DOT1L_LS039	chr19:2227127|2227737:+	DOT1L	DOT1 like histone lysine methyltransferase	protein coding gene	no	ENST00000446286.1;ENST00000446286.1;ENST00000446286.1	0.597	0.207	0.822	0.5(4792)	0.423(297)	0.301(5231)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SARAF_LS010	chr8:30074028|30082847:-	SARAF	store-operated calcium entry associated regulatory factor	protein coding gene	no	ENST00000523761.1	0.011	0.041	3.840	0.24(2298)	0.246(173)	0.944(16404)	non tumor-specific	alt_3prime;exon_skip	yes
MUC4_LS126	chr3:195779689|195783242:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	0.625	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_EIF4H_LS0012	chr7:74187743|74196757:-	EIF4H	eukaryotic translation initiation factor 4H	protein coding gene	no	.	2.453	0.262	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF577_LS017	chr19:51880401|51880679:-	ZNF577	zinc finger protein 577	protein coding gene	no	ENST00000638827.1;ENST00000640955.1;ENST00000301399.11;ENST00000639636.1;ENST00000451628.8;ENST00000638348.1;ENST00000638325.1;ENST00000638814.1;ENST00000638538.1;ENST00000640429.1	4.231	2.593	31.497	0.918(8798)	0.974(684)	0.971(16880)	non tumor-specific	alt_3prime;alt_5prime	yes
ARHGEF1_LS050	chr19:41905827|41905939:+	ARHGEF1	Rho guanine nucleotide exchange factor 1	protein coding gene	yes	ENST00000354532.7;ENST00000600274.5;ENST00000599846.5;ENST00000347545.8;ENST00000378152.8;ENST00000337665.8;ENST00000599589.5;ENST00000595897.5;ENST00000595723.5;ENST00000600517.1;ENST00000598587.1;ENST00000598444.1	139.834	55.925	159.285	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
UTS2B_LS011	chr3:191282313|191316036:-	UTS2B	urotensin 2B	protein coding gene	no	ENST00000463450.1	0.117	0.019	0.651	0.003(32)	0.003(2)	0.01(175)	non tumor-specific	exon_skip	yes
LYPD5_LS004	chr19:43799834|43802317:-	LYPD5	LY6/PLAUR domain containing 5	protein coding gene	no	ENST00000377950.7	0.558	1.505	9.375	0.144(1376)	0.118(83)	0.167(2904)	non tumor-specific	nAS	yes
AC113208.2_LS001	chr15:75226983|75228413:-	AC113208.2	-	pseudogene	no	ENST00000637356.2;ENST00000563803.1	1.012	0.000	0.670	0(3)	0(0)	0.007(113)	non tumor-specific	nAS	yes
NINL_LS033	chr20:25517849|25526408:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5	6.725	5.498	4.669	0.776(7437)	0.859(603)	0.894(15534)	non tumor-specific	nAS	yes
UN_MSC-AS1_LS0027	chr8:71973659|72002222:+	MSC-AS1	MSC antisense RNA 1	lncRNA gene	no	.	1.845	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_OFD1_LS0030	chrX:13763855|13768054:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	.	8.778	0.205	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
LAMA3_LS001	chr18:23689977|23713920:+	LAMA3	laminin subunit alpha 4	protein coding gene	no	ENST00000313654.13;ENST00000585600.5;ENST00000399516.7	1.368	0.904	1.868	0.37(3549)	0.527(370)	0.64(11123)	non tumor-specific	exon_skip	yes
FLII_LS016	chr17:18247052|18247169:-	FLII	FLII actin remodeling protein	protein coding gene	no	ENST00000327031.8;ENST00000545457.6;ENST00000578101.5;ENST00000579294.5;ENST00000459958.2	62.668	50.674	135.291	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
TCF3_LS043	chr19:1627426|1632038:-	TCF3	transcription factor 7 like 1	protein coding gene	yes	ENST00000262965.9;ENST00000611869.4;ENST00000588136.5;ENST00000587235.5;ENST00000262965.9;ENST00000611869.4;ENST00000588136.5;ENST00000587235.5	53.069	18.505	23.201	0.984(9430)	0.99(695)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
FANCD2OS_LS007	chr3:10103089|10104574:-	FANCD2OS	FANCD2 opposite strand	protein coding gene	no	ENST00000453223.2	1.302	0.000	0.808	0(1)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_LYRM7_UP_LS0003	chr5:131023196|131028238:+	LYRM7	LYR motif containing 7	protein coding gene	no	.	3.228	4.013	0.000	0.006(53)	0.047(33)	0(0)	non tumor-specific	nAS	no
HSPG2_LS090	chr1:21877539|21878186:-	HSPG2	heparan sulfate proteoglycan 2	protein coding gene	no	ENST00000480900.1	0.404	0.058	1.155	0.039(372)	0.037(26)	0.446(7755)	non tumor-specific	nAS	yes
NRIP3_LS002	chr11:8983560|8983875:-	NRIP3	nuclear receptor interacting protein 3	protein coding gene	no	ENST00000309166.7	4.826	3.832	1.902	0.601(5756)	0.554(389)	0.683(11872)	non tumor-specific	alt_3prime;intron_retention	yes
UN_ACTB_LS0324	chr7:5528480|5528507:+	ACTB	actin beta	protein coding gene	no	.	114.593	18.310	0.000	0.007(65)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_COL3A1_LS0203	chr2:189006411|189008039:-	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	.	19.691	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FOXO3_LS0018	chr6:108590423|108663455:+	FOXO3	forkhead box O3	protein coding gene	yes	.	3.827	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BTAF1_LS0038	chr10:91964201|91966644:+	BTAF1	B-TFIID TATA-box binding protein associated factor 1	protein coding gene	no	.	7.747	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_PDZD2_LS0065	chr5:32106502|32109407:-	PDZD2	PDZ domain containing 2	protein coding gene	no	.	1.585	0.164	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_INIP_LS0027	chr9:112716541|112717373:-	INIP	INTS3 and NABP interacting protein	protein coding gene	no	.	1.994	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
DENND2C_LS019	chr1:114622065|114622987:-	DENND2C	DENN domain containing 2C	protein coding gene	no	ENST00000393274.5;ENST00000393277.2;ENST00000481894.1	3.333	2.212	1.947	0.263(2519)	0.415(291)	0.761(13223)	non tumor-specific	alt_5prime;exon_skip	yes
GIPC1_LS021	chr19:14491743|14496037:-	GIPC1	GIPC PDZ domain containing family member 1	protein coding gene	no	ENST00000586027.5;ENST00000591349.5	3.064	1.779	4.501	0.674(6453)	0.734(515)	0.924(16059)	non tumor-specific	exon_skip;mutex_exons	yes
CEACAMP3_LS001	chr19:41602552|41604164:+	CEACAMP3	CEA cell adhesion molecule pseudogene 3	pseudogene	no	ENST00000473762.2	0.413	0.199	0.782	0.013(127)	0.013(9)	0.058(1013)	non tumor-specific	nAS	yes
THEGL_LS002	chr4:56548823|56552549:+	THEGL	theg spermatid protein like	protein coding gene	no	ENST00000512175.2	1.189	0.048	0.698	0.012(113)	0.004(3)	0.091(1580)	non tumor-specific	nAS	yes
SLC35F4_LS005	chr14:57572019|57580439:-	SLC35F4	solute carrier family 35 member F4	protein coding gene	no	ENST00000556306.1	1.384	0.065	1.009	0.004(42)	0.011(8)	0.055(951)	non tumor-specific	exon_skip	yes
TIAM1_LS038	chr21:31464035|31558927:-	TIAM1	TIAM Rac1 associated GEF 1	protein coding gene	no	ENST00000286827.7;ENST00000541036.5	0.542	0.426	1.015	0.211(2018)	0.093(65)	0.193(3361)	non tumor-specific	exon_skip	yes
UN_COL23A1_LS0045	chr5:178304920|178312874:+	COL23A1	collagen type XXIII alpha 1 chain	protein coding gene	no	.	3.381	1.055	0.000	0.032(307)	0.036(25)	0(0)	non tumor-specific	nAS	no
UN_EHMT1_LS0059	chr9:137776769|137777899:-	EHMT1	euchromatic histone lysine methyltransferase 1	protein coding gene	no	.	0.826	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DNAH2_LS032	chr17:7770408|7770557:+	DNAH2	dynein axonemal heavy chain 2	protein coding gene	no	ENST00000572933.5;ENST00000389173.6;ENST00000574518.1	3.732	0.659	0.962	0.045(435)	0.037(26)	0.147(2556)	non tumor-specific	nAS	yes
KRBA1_LS005	chr7:149715066|149719546:+	KRBA1	KRAB-A domain containing 1	protein coding gene	no	ENST00000496259.5;ENST00000496259.5	0.774	0.575	2.098	0.669(6409)	0.665(467)	0.833(14483)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
STRCP1_LS016	chr15:43710456|43710610:-	STRCP1	stereocilin pseudogene 1	pseudogene	no	ENST00000509801.1	3.438	0.000	0.760	0.001(11)	0(0)	0.077(1341)	non tumor-specific	nAS	yes
UN_PIEZO1_LS0100	chr16:88737630|88737728:-	PIEZO1	piezo type mechanosensitive ion channel component 1	protein coding gene	no	.	2.791	0.340	0.000	0.011(108)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_RELL2_LS0008	chr5:141638687|141638795:+	RELL2	RELT like 2	protein coding gene	no	.	1.769	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BVES_LS007	chr6:105133588|105136201:-	BVES	blood vessel epicardial substance	protein coding gene	no	ENST00000446408.2	0.265	0.014	0.579	0.002(17)	0.004(3)	0.01(169)	non tumor-specific	nAS	yes
CCDC7_LS055	chr10:32729457|32805015:+	CCDC7	coiled-coil domain containing 7	protein coding gene	no	ENST00000375025.10;ENST00000302316.12	1.936	0.136	0.705	0.003(29)	0.004(3)	0.108(1880)	non tumor-specific	exon_skip	yes
PGR-AS1_LS001	chr11:101129888|101130689:+	PGR-AS1	PGR antisense RNA 1	lncRNA gene	no	ENST00000632820.1	1.388	0.000	0.706	0(1)	0(0)	0.024(421)	non tumor-specific	nAS	yes
UN_TREML4_UP_LS0015	chr6:41140653|41155412:+	TREML4	triggering receptor expressed on myeloid cells like 4	protein coding gene	no	.	1.291	0.067	0.000	0.01(99)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_FTH1P10_LS0001	chr5:17353791|17354011:+	FTH1P10	ferritin heavy chain 1 pseudogene 10	pseudogene	no	.	2.448	2.715	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
MEG3_LS019	chr14:100831534|100835739:+	MEG3	maternally expressed 3	lncRNA gene	yes	ENST00000519709.6;ENST00000424076.8;ENST00000554639.5	0.098	0.072	1.916	0.226(2166)	0.197(138)	0.526(9140)	non tumor-specific	nAS	yes
SLC16A10_LS005	chr6:111177563|111177566:+	SLC16A10	solute carrier family 16 member 10	protein coding gene	no	ENST00000612036.4	0.000	1.501	0.574	0(0)	0.001(1)	0.009(153)	non tumor-specific	nAS	yes
AC103876.1_LS001	chr15:83179251|83179778:+	AC103876.1	-	lncRNA gene	no	ENST00000568634.1	8.035	0.000	0.726	0(4)	0(0)	0.034(597)	non tumor-specific	nAS	yes
PTPRS_LS035	chr19:5231615|5238919:-	PTPRS	protein tyrosine phosphatase receptor type S	protein coding gene	no	ENST00000587303.5;ENST00000588012.5	12.434	8.218	15.441	0.801(7670)	0.915(642)	0.933(16219)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TSPAN14_LS0183	chr10:80520408|80520465:-	TSPAN14	tetraspanin 14	protein coding gene	no	.	1.736	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AF241726.2_LS0124	chrX:37949405|38054213:+	AF241726.2	-	protein coding gene	no	.	1.338	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SELENBP1_LS0015	chr1:151365281|151365606:-	SELENBP1	selenium binding protein 1	protein coding gene	yes	.	3.160	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
XYLT1_LS011	chr16:17355415|17358012:-	XYLT1	xylosyltransferase 1	protein coding gene	no	ENST00000568226.5;ENST00000563403.1	0.440	0.050	0.718	0.025(240)	0.006(4)	0.144(2495)	non tumor-specific	exon_skip	yes
UN_PRDM16_LS0043	chr1:3313513|3322884:-	PRDM16	PR/SET domain 16	protein coding gene	yes	.	4.924	1.752	0.000	0.1(962)	0.103(72)	0(0)	non tumor-specific	nAS	no
KIAA2012_LS024	chr2:202184843|202186933:+	KIAA2012	KIAA2012	protein coding gene	no	ENST00000541917.6;ENST00000498697.2;ENST00000469462.1	1.736	1.752	1.258	0.017(164)	0.064(45)	0.113(1956)	non tumor-specific	nAS	yes
AL390879.1_LS009	chrX:136994995|137019287:+	AL390879.1	-	pseudogene	no	ENST00000438602.5	0.101	0.001	0.716	0.026(249)	0.013(9)	0.03(517)	non tumor-specific	nAS	yes
UN_RNU6-793P_UP_LS0007	chr6:14457078|14498057:+	RNU6-793P	RNA, U6 small nuclear 793, pseudogene	small non-coding RNA gene	no	.	2.645	0.888	0.000	0.006(56)	0.051(36)	0(0)	non tumor-specific	nAS	no
SERPINA1_LS047	chr14:94389945|94390457:-	SERPINA1	serpin family A member 1	protein coding gene	no	ENST00000557093.1	0.012	0.025	1.391	0.359(3436)	0.464(326)	0.084(1467)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
NBPF20_LS035	chr1:145351202|145351917:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6;ENST00000622803.4	2.343	0.310	0.000	0.01(92)	0.004(3)	0(0)	non tumor-specific	nAS	yes
UN_CUTC_LS0001	chr10:99702673|99704465:+	CUTC	cutC copper transporter	protein coding gene	no	.	2.424	0.154	0.000	0.014(131)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ABCA2_LS0060	chr9:137019306|137020328:-	ABCA2	ATP binding cassette subfamily A member 2	protein coding gene	no	.	5.761	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_PRDM9_LS0002	chr5:23489604|23493471:+	PRDM9	PR/SET domain 9	protein coding gene	yes	.	2.569	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MGAT1_LS0131	chr5:180792252|180792288:+	MGAT1	monoacylglycerol O-acyltransferase 1	protein coding gene	no	.	2.766	0.261	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KDM5C_LS0066	chrX:53193579|53194216:+	KDM5C	lysine demethylase 5C	protein coding gene	no	.	1.743	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCM9_LS0021	chr6:118907681|118912808:+	MCM9	minichromosome maintenance 9 homologous recombination repair factor	protein coding gene	yes	.	1.349	0.337	0.000	0.012(119)	0.017(12)	0(0)	non tumor-specific	nAS	no
AGO1_LS002	chr1:35883446|35888427:+	AGO1	argonaute RISC component 1	protein coding gene	no	ENST00000373204.5	3.588	2.955	2.663	0.79(7573)	0.905(635)	0.892(15509)	non tumor-specific	alt_3prime	yes
NCAPD3_LS043	chr11:134209477|134210270:-	NCAPD3	non-SMC condensin II complex subunit D3	protein coding gene	no	ENST00000534532.6;ENST00000534548.6;ENST00000525964.6;ENST00000533155.5	11.804	6.009	4.128	0.847(8113)	0.902(633)	0.923(16041)	non tumor-specific	alt_5prime;exon_skip	yes
UN_WDSUB1_LS0025	chr2:159259843|159275546:-	WDSUB1	WD repeat, sterile alpha motif and U-box domain containing 1	protein coding gene	no	.	2.353	0.538	0.000	0.033(312)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
VIL1_LS010	chr2:218429675|218429849:+	VIL1	villin 1	protein coding gene	yes	ENST00000248444.9;ENST00000392114.6;ENST00000440053.1	50.746	45.725	1.749	0.301(2888)	0.355(249)	0.176(3052)	non tumor-specific	nAS	yes
UN_PDZK1_LS0008	chr1:145673881|145676158:-	PDZK1	PDZ domain containing 1	protein coding gene	no	.	5.230	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ATP2C1_LS002	chr3:130850928|130930416:+	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	ENST00000505330.5;ENST00000504381.5;ENST00000507488.6	3.407	2.888	1.810	0.711(6810)	0.779(547)	0.526(9139)	non tumor-specific	nAS	yes
UN_PLEKHH1_LS0010	chr14:67562035|67562293:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	.	0.995	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_FAM204A_LS0018	chr10:118335641|118336233:-	FAM204A	family with sequence similarity 204 member A	protein coding gene	no	.	3.396	2.649	0.000	0.025(241)	0.041(29)	0(0)	non tumor-specific	alt_5prime	no
UN_AP2M1_LS0075	chr3:184183959|184183998:-	AP2M1	adaptor related protein complex 2 subunit mu 1	protein coding gene	no	.	9.656	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TAGLN_LS0009	chr11:117200812|117203002:+	TAGLN	transgelin	protein coding gene	yes	.	2.514	2.031	0.000	0.014(136)	0.034(24)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
DCAF8_LS023	chr1:160240370|160243960:-	DCAF8	DDB1 and CUL4 associated factor 8	protein coding gene	no	ENST00000368073.7;ENST00000326837.6;ENST00000368074.5;ENST00000461888.5;ENST00000610139.5;ENST00000475733.5;ENST00000447377.5;ENST00000440682.5;ENST00000407642.6;ENST00000419626.1	63.511	49.723	71.788	0.993(9513)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_IER2_LS0059	chr19:13153512|13154430:-	IER2	immediate early response 2	protein coding gene	no	.	1.081	1.473	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
NTRK3_LS008	chr15:87916560|87929191:-	NTRK3	neurotrophic receptor tyrosine kinase 3	protein coding gene	yes	ENST00000542733.6	0.309	0.485	0.728	0.003(25)	0.007(5)	0.098(1708)	non tumor-specific	exon_skip	yes
PHKA1_LS029	chrX:72656242|72657588:-	PHKA1	phosphorylase kinase regulatory subunit alpha 1	protein coding gene	no	ENST00000373542.8;ENST00000373545.7;ENST00000339490.7;ENST00000541944.5;ENST00000373539.3	7.670	3.913	4.397	0.746(7146)	0.819(575)	0.887(15414)	non tumor-specific	nAS	yes
UN_AC104472.3_LS0013	chr3:155802591|155803306:-	AC104472.3	-	protein coding gene	no	.	1.085	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLCO4A1_LS0027	chr20:62661175|62667745:+	SLCO4A1	solute carrier organic anion transporter family member 4A1	protein coding gene	no	.	1.741	0.103	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ICAM2_LS016	chr17:64006671|64020523:-	ICAM2	intercellular adhesion molecule 2	protein coding gene	no	ENST00000578379.5;ENST00000578379.5;ENST00000578379.5	0.210	0.332	1.350	0.247(2369)	0.238(167)	0.612(10645)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TMEM225_LS002	chr11:123884209|123884490:-	TMEM225	transmembrane protein 225	protein coding gene	no	ENST00000375026.6;ENST00000528595.1	2.871	0.000	0.667	0(2)	0(0)	0.006(112)	non tumor-specific	nAS	yes
UN_ATP8B1_LS0027	chr18:57675017|57684036:-	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	.	24.662	24.355	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAJC27_LS009	chr2:24958601|24963405:-	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27	protein coding gene	no	ENST00000380809.7;ENST00000468467.5	0.166	0.241	1.554	0.376(3600)	0.571(401)	0.715(12425)	non tumor-specific	exon_skip	yes
UN_AC020915.5_LS0009	chr19:58230497|58237249:+	AC020915.5	-	protein coding gene	no	.	0.726	0.201	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
PMS2_LS012	chr7:5995633|5997326:-	PMS2	PMS1 homolog 2, mismatch repair system component	protein coding gene	no	ENST00000265849.11;ENST00000441476.6;ENST00000642292.1;ENST00000642456.1;ENST00000643595.1;ENST00000644110.1;ENST00000406569.7	17.265	10.196	5.632	0.946(9061)	0.97(681)	0.955(16596)	non tumor-specific	exon_skip	yes
UN_ARHGEF7_LS0038	chr13:111304258|111304304:-	ARHGEF7	Rho guanine nucleotide exchange factor 7	protein coding gene	no	.	1.657	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NBPF14_LS068	chr1:148579237|148583141:-	NBPF14	NBPF member 14	protein coding gene	no	ENST00000614999.4;ENST00000619423.4;ENST00000621066.4;ENST00000581201.5;ENST00000621070.4;ENST00000611826.4	1.418	0.768	0.630	0.653(6261)	0.762(535)	0.011(183)	non tumor-specific	nAS	yes
MUC5AC_LS044	chr11:1198004|1198268:+	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	ENST00000621226.2	42.551	65.154	0.876	0.165(1577)	0.124(87)	0.141(2455)	non tumor-specific	exon_skip	yes
UN_DDIT4_LS0023	chr10:72274774|72275005:-	DDIT4	DNA damage inducible transcript 4	protein coding gene	no	.	5.235	0.315	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CD1D_LS0017	chr1:158183156|158183931:+	CD1D	CD1d molecule	protein coding gene	no	.	4.208	0.952	0.000	0.059(564)	0.034(24)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_IFI44L_LS0013	chr1:78629915|78635342:+	IFI44L	interferon induced protein 44 like	protein coding gene	no	.	5.165	3.553	0.000	0.005(49)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
LEMD3_LS004	chr12:65171118|65210926:+	LEMD3	LEM domain containing 3	protein coding gene	no	ENST00000308330.2	9.969	7.763	10.953	0.87(8334)	0.94(660)	0.966(16791)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATG16L2_LS044	chr11:72828984|72829303:+	ATG16L2	autophagy related 16 like 2	protein coding gene	no	ENST00000321297.9;ENST00000435507.6;ENST00000439504.6;ENST00000544490.5;ENST00000536995.5;ENST00000541367.5;ENST00000540222.5	26.232	11.248	70.659	0.947(9073)	0.953(669)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KLF11_UP_LS0006	chr2:10030667|10038378:+	KLF11	Kruppel like factor 11	protein coding gene	no	.	3.916	0.383	0.000	0.09(865)	0.007(5)	0(0)	non tumor-specific	nAS	no
ECPAS_LS013	chr9:111373236|111373315:-	ECPAS	Ecm29 proteasome adaptor and scaffold	protein coding gene	no	ENST00000338205.9;ENST00000259335.8	126.383	85.255	125.343	0.911(8729)	0.98(688)	0.979(17021)	non tumor-specific	nAS	yes
TUBGCP5_LS021	chr15:23024830|23026116:-	TUBGCP5	tubulin gamma complex associated protein 5	protein coding gene	no	ENST00000614508.4;ENST00000615383.4;ENST00000620435.4	7.198	4.473	8.924	0.913(8752)	0.966(678)	0.955(16603)	non tumor-specific	nAS	yes
RNF8_LS021	chr6:37374709|37390742:+	RNF8	ring finger protein 8	protein coding gene	yes	.;.	3.259	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
CDK18_LS025	chr1:205527917|205529324:+	CDK18	cyclin dependent kinase 18	protein coding gene	no	.;.	1.890	0.000	0.000	0.001(9)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF322_UP_LS0038	chr6:26814549|26823960:-	ZNF322	zinc finger protein 322 pseudogene 1	protein coding gene	no	.	2.359	0.066	0.000	0.009(84)	0.007(5)	0(0)	non tumor-specific	nAS	no
KCNJ16_LS010	chr17:70105075|70108301:+	KCNJ16	potassium inwardly rectifying channel subfamily J member 16	protein coding gene	no	ENST00000392670.5;ENST00000585558.5;ENST00000587892.1;ENST00000392670.5;ENST00000585558.5;ENST00000587892.1	0.919	0.637	1.741	0.211(2024)	0.339(238)	0.192(3340)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SPRYD3_LS0035	chr12:53066486|53067648:-	SPRYD3	SPRY domain containing 3	protein coding gene	no	.	5.129	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC011767.1_LS001	chr15:22770927|22771221:-	AC011767.1	-	pseudogene	no	ENST00000617410.4	5.498	0.232	0.800	0.006(57)	0.006(4)	0.062(1084)	non tumor-specific	nAS	yes
UN_LINC00622_UP_LS0007	chr1:119627746|119648071:-	LINC00622	long intergenic non-protein coding RNA 622	lncRNA gene	no	.	1.371	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RRP7A_LS0018	chr22:42515259|42516011:-	RRP7A	ribosomal RNA processing 7 homolog A	protein coding gene	no	.	17.868	2.709	0.000	0.017(166)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
GATA6-AS1_LS004	chr18:22167803|22168086:-	GATA6-AS1	GATA6 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000579431.2	2.252	0.696	0.000	0.003(29)	0.009(6)	0(0)	non tumor-specific	nAS	yes
UN_CCDC71_LS0042	chr3:49164260|49166091:-	CCDC71	coiled-coil domain containing 71	protein coding gene	no	.	3.199	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKAR1B_LS0153	chr7:723025|727590:-	PRKAR1B	protein kinase cAMP-dependent type I regulatory subunit beta	protein coding gene	no	.	1.324	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
ST8SIA6-AS1_LS001	chr10:17387075|17399105:+	ST8SIA6-AS1	ST8SIA6 antisense RNA 1	lncRNA gene	no	ENST00000457649.6;ENST00000377597.6;ENST00000451225.2	11.108	0.515	1.266	0.179(1715)	0.16(112)	0.205(3561)	non tumor-specific	nAS	yes
NOVA2_LS002	chr19:45953946|45961010:-	NOVA2	NOVA alternative splicing regulator 2	protein coding gene	no	ENST00000263257.5;ENST00000596784.1	7.276	7.841	7.918	0.743(7117)	0.83(583)	0.888(15430)	non tumor-specific	alt_5prime;exon_skip	yes
KCNIP3_LS006	chr2:95310520|95374296:+	KCNIP3	potassium voltage-gated channel interacting protein 3	protein coding gene	no	ENST00000295225.9;ENST00000360990.7	5.666	4.286	4.180	0.253(2426)	0.352(247)	0.35(6080)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
GOLGA6D_LS003	chr15:75286773|75287629:+	GOLGA6D	golgin A6 family member D	protein coding gene	no	ENST00000434739.3;ENST00000618219.5	0.637	0.000	0.725	0.003(29)	0(0)	0.001(26)	non tumor-specific	nAS	yes
SFMBT1_LS025	chr3:53018228|53043136:-	SFMBT1	Scm like with four mbt domains 1	protein coding gene	no	ENST00000474837.5	0.630	0.351	0.679	0.095(907)	0.167(117)	0.157(2722)	non tumor-specific	exon_skip	yes
LRR1_LS010	chr14:49603618|49607400:+	LRR1	leucine rich repeat protein 1	protein coding gene	no	ENST00000554869.5	3.330	1.709	1.321	0.552(5285)	0.46(323)	0.672(11679)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LRRC26_LS001	chr9:137169185|137169271:-	LRRC26	leucine rich repeat containing 26	protein coding gene	no	ENST00000371542.3	7.040	5.390	3.565	0.553(5303)	0.523(367)	0.363(6311)	non tumor-specific	nAS	yes
AC016738.2_LS002	chr2:100975413|100975533:-	AC016738.2	-	lncRNA gene	no	ENST00000439150.5	0.332	0.023	0.686	0.009(88)	0.006(4)	0.044(771)	non tumor-specific	nAS	yes
UN_RNF220_LS0061	chr1:44631812|44632343:+	RNF220	ring finger protein 220	protein coding gene	no	.	2.772	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_MSANTD3_UP_LS0022	chr9:100384001|100390449:+	MSANTD3	Myb/SANT DNA binding domain containing 3	protein coding gene	no	.	1.281	0.126	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
TAOK2_LS008	chr16:29979508|29981661:+	TAOK2	TAO kinase 2	protein coding gene	no	ENST00000308893.8;ENST00000543033.5;ENST00000279394.7	57.535	39.132	42.894	0.989(9472)	0.994(698)	0.979(17019)	non tumor-specific	nAS	yes
BMS1P1_LS009	chr10:46796793|46797132:+	BMS1P1	BMS1 pseudogene 1	pseudogene	no	ENST00000374336.5	2.706	0.005	0.622	0.002(20)	0.001(1)	0.03(522)	non tumor-specific	nAS	yes
UN_AC116345.1_LS0010	chr5:73246656|73274684:-	AC116345.1	-	lncRNA gene	no	.	5.959	1.659	0.000	0.171(1634)	0.249(175)	0(0)	non tumor-specific	nAS	no
MAP3K15_LS015	chrX:19398359|19400576:-	MAP3K15	mitogen-activated protein kinase kinase kinase 15	protein coding gene	no	ENST00000518578.5;ENST00000359173.7;ENST00000338883.8	4.653	6.147	1.137	0.052(494)	0.209(147)	0.161(2798)	non tumor-specific	exon_skip	yes
USP18_LS008	chr22:18170920|18173150:+	USP18	ubiquitin specific peptidase 18	protein coding gene	no	ENST00000215794.7	26.261	11.940	2.300	0.976(9349)	0.987(693)	0.815(14173)	non tumor-specific	nAS	yes
PTPRVP_LS025	chr1:202187981|202188827:+	PTPRVP	protein tyrosine phosphatase receptor type V, pseudogene	pseudogene	no	ENST00000639439.1	0.974	0.000	0.779	0(2)	0(0)	0.133(2312)	non tumor-specific	nAS	yes
UN_RNU7-173P_UP_LS0014	chr20:47843288|47844583:-	RNU7-173P	RNA, U7 small nuclear 173 pseudogene	small non-coding RNA gene	no	.	1.154	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
CAMTA1_LS039	chr1:7755668|7766459:+	CAMTA1	calmodulin binding transcription activator 1	protein coding gene	yes	ENST00000303635.11	1.538	3.381	5.452	0.024(234)	0.007(5)	0.156(2717)	non tumor-specific	exon_skip	yes
RRAS2_LS012	chr11:14295855|14358238:-	RRAS2	RAS related 2	protein coding gene	yes	ENST00000532814.5	0.629	0.403	0.649	0.173(1657)	0.268(188)	0.109(1901)	non tumor-specific	alt_5prime	yes
UN_SCAMP5_LS0018	chr15:75012805|75018418:+	SCAMP5	secretory carrier membrane protein 5	protein coding gene	no	.	1.818	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip	no
CDHR3_LS032	chr7:106015182|106020373:+	CDHR3	cadherin related family member 3	protein coding gene	no	ENST00000468477.1	0.431	0.218	0.764	0.087(831)	0.17(119)	0.107(1865)	non tumor-specific	nAS	yes
STARD13-AS_LS030	chr13:33277696|33279533:+	STARD13-AS	STARD13 antisense RNA	lncRNA gene	no	ENST00000628131.2;ENST00000609233.5;ENST00000609167.5;ENST00000608175.5;ENST00000609335.5;ENST00000609536.5;ENST00000609343.5;ENST00000590747.5;ENST00000586727.5;ENST00000591781.5;ENST00000592544.5	0.296	0.113	0.722	0.016(157)	0.085(60)	0.027(475)	non tumor-specific	nAS	yes
UN_POM121C_LS0046	chr7:75424628|75437515:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	.	1.953	0.252	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_PRPF40A_LS0014	chr2:152659009|152659270:-	PRPF40A	pre-mRNA processing factor 40 homolog A	protein coding gene	no	.	27.958	1.273	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_AL132857.2_LS0031	chr14:36572245|36654749:+	AL132857.2	-	no	no	.	3.282	1.695	0.000	0.029(275)	0.06(42)	0(0)	non tumor-specific	nAS	no
UN_LMAN2L_LS0026	chr2:96738067|96739840:-	LMAN2L	lectin, mannose binding 2 like	protein coding gene	no	.	2.346	0.873	0.000	0.018(176)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_PRRC2C_LS0126	chr1:171557550|171557689:-	PRRC2C	proline rich coiled-coil 2C	protein coding gene	no	.	4.125	0.670	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	nAS	no
AKAP9_LS008	chr7:91980333|91992885:+	AKAP9	A-kinase anchoring protein 9	protein coding gene	yes	ENST00000438114.1	4.143	2.654	0.927	0.359(3436)	0.379(266)	0.225(3912)	non tumor-specific	exon_skip	yes
UN_MAN2A1_LS0023	chr5:109819887|109823723:+	MAN2A1	mannosidase alpha class 2A member 1	protein coding gene	no	.	1.072	0.324	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MIR1587_UP_LS0021	chrX:39787076|39787145:+	MIR1587	microRNA 1587	small non-coding RNA gene	no	.	8.983	0.268	0.000	0.021(200)	0.007(5)	0(0)	non tumor-specific	nAS	no
STX11_LS001	chr6:144150703|144186623:+	STX11	syntaxin 11	protein coding gene	no	ENST00000367568.4	3.837	5.479	4.431	0.77(7373)	0.856(601)	0.851(14799)	non tumor-specific	nAS	yes
CYB5R3_LS015	chr22:42636846|42649295:-	CYB5R3	cytochrome b5 reductase 3	protein coding gene	no	ENST00000352397.9	66.925	62.824	230.155	0.994(9526)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_NCOA7_LS0048	chr6:125919552|125920943:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	.	1.838	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
CPNE6_LS013	chr14:24071641|24073499:+	CPNE6	copine 6	protein coding gene	no	ENST00000558859.5;ENST00000560092.5;ENST00000558859.5;ENST00000560092.5	0.624	0.114	4.431	0.057(545)	0.137(96)	0.209(3626)	non tumor-specific	alt_5prime;exon_skip	yes
SCFD1_LS016	chr14:30634037|30643316:+	SCFD1	sec1 family domain containing 1	protein coding gene	no	ENST00000554776.5	0.331	0.192	0.640	0.553(5300)	0.625(439)	0.024(410)	non tumor-specific	exon_skip;mutex_exons	yes
UN_VAMP4_LS0021	chr1:171728570|171732198:-	VAMP4	vesicle associated membrane protein 4	protein coding gene	no	.	1.685	0.043	0.000	0.008(77)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RN7SL201P_UP_LS0018	chr2:81548747|81549696:+	RN7SL201P	RNA, 7SL, cytoplasmic 201, pseudogene	small non-coding RNA gene	no	.	1.255	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
PAPPA2_LS018	chr1:176769784|176770967:+	PAPPA2	pappalysin 2	protein coding gene	no	ENST00000367662.4	5.963	4.347	1.169	0.087(837)	0.309(217)	0.368(6403)	non tumor-specific	exon_skip	yes
CNOT10_LS010	chr3:32708820|32713227:+	CNOT10	CCR4-NOT transcription complex subunit 10	protein coding gene	no	ENST00000331889.10;ENST00000328834.9;ENST00000435630.5;ENST00000556853.5;ENST00000494439.5;ENST00000454516.6;ENST00000485136.5;ENST00000416457.5	15.581	9.913	13.874	0.965(9241)	0.989(694)	0.977(16975)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RFC3_UP_LS0004	chr13:33679606|33686867:+	RFC3	replication factor C subunit 3	protein coding gene	yes	.	4.489	2.059	0.000	0.387(3708)	0.315(221)	0(0)	non tumor-specific	nAS	no
PRDM2_LS002	chr1:13705645|13715541:+	PRDM2	PR/SET domain 2	protein coding gene	yes	ENST00000311066.9;ENST00000235372.11	0.220	0.040	0.661	0.019(186)	0.019(13)	0.023(395)	non tumor-specific	nAS	yes
UN_CYP2T3P_LS0001	chr19:41135630|41136373:-	CYP2T3P	cytochrome P450 family 2 subfamily T member 3, pseudogene	pseudogene	no	.	1.498	0.068	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
GBA_LS009	chr1:155235844|155236245:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000368373.7;ENST00000327247.9;ENST00000427500.7;ENST00000428024.3;ENST00000478472.1;ENST00000484489.5	127.921	69.819	57.663	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_ST6GAL2-IT1_UP_LS0001	chr2:106844034|106887167:-	ST6GAL2-IT1	ST6GAL2 intronic transcript 1	lncRNA gene	no	.	1.192	0.099	0.000	0.029(278)	0.011(8)	0(0)	non tumor-specific	nAS	no
AL592161.1_LS001	chr1:66827071|66827828:+	AL592161.1	-	lncRNA gene	no	ENST00000456389.1	0.045	0.026	0.686	0.171(1640)	0.365(256)	0.035(605)	non tumor-specific	nAS	yes
ATP13A3_LS008	chr3:194406116|194413759:-	ATP13A3	ATPase 13A3	protein coding gene	no	ENST00000439040.5;ENST00000645538.1;ENST00000256031.8;ENST00000439040.5;ENST00000645538.1;ENST00000256031.8	6.834	2.600	3.109	0.339(3247)	0.427(300)	0.766(13318)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PLA2G6_LS0027	chr22:38122269|38123095:-	PLA2G6	phospholipase A2 group VI	protein coding gene	no	.	1.858	0.516	0.000	0.003(30)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AL450322.2_UP_LS0003	chr10:3287815|3288190:+	AL450322.2	-	lncRNA gene	no	.	1.087	0.777	0.000	0.003(25)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_MIA2_LS0013	chr14:39267039|39276934:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	.	1.198	0.314	0.000	0.04(382)	0.027(19)	0(0)	non tumor-specific	nAS	no
TIAM2_LS039	chr6:155245731|155248000:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000461783.7;ENST00000528535.5;ENST00000360366.8;ENST00000529824.6;ENST00000456877.6;ENST00000528391.6;ENST00000275246.11;ENST00000462408.2	4.453	3.852	1.944	0.425(4074)	0.4(281)	0.721(12528)	non tumor-specific	nAS	yes
MT3_LS003	chr16:56589621|56589814:+	MT3	metallothionein 3	protein coding gene	no	ENST00000566576.1	1.134	0.367	4.757	0.149(1427)	0.094(66)	0.213(3711)	non tumor-specific	alt_3prime;exon_skip	yes
ALG13_LS045	chrX:111721711|111723798:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000490774.2;ENST00000490774.2	0.545	0.263	2.519	0.569(5453)	0.527(370)	0.803(13957)	non tumor-specific	alt_5prime;exon_skip	yes
ACCS_LS011	chr11:44071315|44073447:+	ACCS	1-aminocyclopropane-1-carboxylate synthase homolog (inactive)	protein coding gene	no	ENST00000533208.5;ENST00000524990.5;ENST00000263776.8;ENST00000526577.5;ENST00000533208.5;ENST00000524990.5;ENST00000263776.8;ENST00000526577.5	5.915	5.877	14.523	0.881(8444)	0.979(687)	0.961(16712)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GBGT1_LS015	chr9:133162532|133163754:-	GBGT1	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)	protein coding gene	no	ENST00000372040.8;ENST00000372043.7;ENST00000470431.5;ENST00000472281.5;ENST00000540636.6;ENST00000646215.1;ENST00000372038.7;ENST00000372036.4;ENST00000487864.1;ENST00000645973.1	4.328	2.958	6.187	0.85(8148)	0.915(642)	0.948(16483)	non tumor-specific	nAS	yes
SUPT20H_LS046	chr13:37047601|37047878:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000490716.5;ENST00000495071.6;ENST00000360252.8;ENST00000475892.5;ENST00000356185.7;ENST00000350612.10;ENST00000542180.5;ENST00000464744.5;ENST00000493537.5;ENST00000464572.5;ENST00000483241.5;ENST00000476109.5;ENST00000497318.1;ENST00000470359.2;ENST00000471868.1	11.247	6.656	17.540	0.96(9194)	0.986(692)	0.976(16971)	non tumor-specific	exon_skip	yes
ZNF541_LS019	chr19:47540951|47544126:-	ZNF541	zinc finger protein 541	protein coding gene	no	ENST00000391901.7;ENST00000263351.9;ENST00000314121.8;ENST00000595558.1;ENST00000391901.7;ENST00000263351.9;ENST00000314121.8;ENST00000595558.1	1.643	0.076	0.824	0.086(825)	0.017(12)	0.258(4488)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SLC17A9_LS0011	chr20:62957846|62957903:-	SLC17A9	solute carrier family 17 member 9	protein coding gene	no	.	5.848	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DNAH8_LS027	chr6:38814129|38815468:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000449981.6;ENST00000359357.7	3.564	0.179	0.800	0.022(215)	0.013(9)	0.033(575)	non tumor-specific	nAS	yes
UN_CDC34_UP_LS0008	chr19:523550|524271:+	CDC34	cell division cycle 34, ubiqiutin conjugating enzyme	protein coding gene	no	.	1.009	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SERPINH1_LS016	chr11:75563770|75566316:+	SERPINH1	serpin family H member 1	protein coding gene	no	ENST00000533603.5;ENST00000649490.1;ENST00000530284.5;ENST00000532356.5;ENST00000524558.5;ENST00000533449.5;ENST00000525611.5;ENST00000528760.1	0.545	1.989	7.159	0.977(9358)	0.981(689)	0.908(15776)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ZBTB16_LS002	chr11:114059882|114063211:+	ZBTB16	zinc finger and BTB domain containing 16	protein coding gene	yes	ENST00000335953.8;ENST00000541602.5	2.879	4.808	16.557	0.499(4782)	0.886(622)	0.95(16514)	non tumor-specific	exon_skip	yes
UN_AKAP13_LS0028	chr15:85579318|85579711:-	AKAP13	A-kinase anchoring protein 13	protein coding gene	yes	.	2.661	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGAP17_LS023	chr16:24954730|24959911:-	ARHGAP17	Rho GTPase activating protein 17	protein coding gene	no	ENST00000575975.5;ENST00000575975.5	0.421	0.228	1.396	0.432(4136)	0.484(340)	0.479(8328)	non tumor-specific	alt_5prime;exon_skip	yes
FGFR1_LS051	chr8:38457534|38467672:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	ENST00000397113.6;ENST00000525001.5;ENST00000526742.5;ENST00000529552.5	0.192	0.294	3.008	0.526(5042)	0.792(556)	0.735(12781)	non tumor-specific	exon_skip	yes
UN_SRPRA_LS0016	chr11:126263455|126263487:+	SRPRA	SRP receptor subunit alpha	protein coding gene	no	.	5.967	0.231	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BICD1_LS0065	chr12:32338979|32377540:+	BICD1	BICD cargo adaptor 1	protein coding gene	no	.	1.330	0.002	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PRDX4_LS012	chrX:23683705|23686002:+	PRDX4	peroxiredoxin 4	protein coding gene	no	ENST00000439422.1	3.088	0.676	0.676	0.12(1154)	0.06(42)	0.098(1707)	non tumor-specific	exon_skip	yes
MEPE_LS004	chr4:87838685|87839685:+	MEPE	matrix extracellular phosphoglycoprotein	protein coding gene	no	ENST00000395102.8;ENST00000497649.6;ENST00000508016.5;ENST00000560249.5	2.336	0.139	1.951	0.019(179)	0.006(4)	0.03(529)	non tumor-specific	exon_skip	yes
UN_AC121764.3_UP_LS0004	chr3:55490167|55490656:-	AC121764.3	-	lncRNA gene	no	.	5.513	0.533	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GAPT_UP_LS0001	chr5:58114759|58194643:+	GAPT	GRB2 binding adaptor protein, transmembrane	protein coding gene	no	.	3.817	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF331_LS0022	chr19:53559722|53559794:-	ZNF331	zinc finger protein 331	protein coding gene	no	.	7.384	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STEAP1B_LS0092	chr7:22510645|22510733:+	STEAP1B	STEAP family member 1B	protein coding gene	no	.	105.544	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL034376.1_UP_LS0002	chr6:4657132|4660812:-	AL034376.1	-	lncRNA gene	no	.	6.664	0.393	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PTCH1_LS0001	chr9:95447066|95447103:+	PTCH1	patched 1	protein coding gene	yes	.	1.926	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ELF1_LS0056	chr13:41054667|41060838:-	ELF1	elongation factor 1 homolog	protein coding gene	no	.	1.839	0.061	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC22A18_LS024	chr11:2922556|2925010:+	SLC22A18	solute carrier family 22 member 18	protein coding gene	no	ENST00000347936.6;ENST00000312221.9;ENST00000649076.1;ENST00000449793.6;ENST00000380574.5;ENST00000463571.5;ENST00000441077.5;ENST00000449603.5;ENST00000495518.1	44.360	32.030	25.240	0.991(9496)	0.991(696)	0.972(16899)	non tumor-specific	nAS	yes
BMS1P3_LS001	chr10:86992469|86993362:+	BMS1P3	BMS1 pseudogene 3	pseudogene	no	ENST00000372011.4	2.115	1.276	12.185	0.138(1321)	0.245(172)	0.897(15586)	non tumor-specific	nAS	yes
UNC5B_LS011	chr10:71291821|71292467:+	UNC5B	unc-5 netrin receptor B	protein coding gene	yes	ENST00000335350.10;ENST00000373192.4	23.355	12.916	5.123	0.886(8491)	0.915(642)	0.881(15307)	non tumor-specific	nAS	yes
UN_LAMB2_LS0049	chr3:49123079|49123132:-	LAMB2	laminin subunit gamma 1	protein coding gene	no	.	22.553	9.224	0.000	0.013(128)	0.024(17)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_TRIP12_LS0060	chr2:229909082|229921880:-	TRIP12	thyroid hormone receptor interactor 12	protein coding gene	no	.	2.490	0.573	0.000	0.032(304)	0.014(10)	0(0)	non tumor-specific	nAS	no
PRPF19_LS019	chr11:60903861|60906364:-	PRPF19	pre-mRNA processing factor 19	protein coding gene	no	ENST00000227524.8;ENST00000541371.5	58.180	30.658	68.021	0.95(9101)	0.959(673)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SUMF1_LS0038	chr3:3927047|3961625:-	SUMF1	sulfatase modifying factor 1	protein coding gene	no	.	2.425	0.000	0.000	0.007(64)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GTPBP8_UP_LS0020	chr3:112910049|112941705:+	GTPBP8	GTP binding protein 8 (putative)	protein coding gene	no	.	2.949	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CASTOR3_LS0054	chr7:100217837|100218522:-	CASTOR3	CASTOR family member 3	protein coding gene	no	.	0.914	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_NOMO2_LS0533	chr16:18431915|18514348:-	NOMO2	NODAL modulator 2	protein coding gene	no	.	86.071	8.933	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMURF1_UP_LS0008	chr7:99207489|99210139:-	SMURF1	SMAD specific E3 ubiquitin protein ligase 1	protein coding gene	yes	.	1.762	0.581	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_KLF6_UP_LS0040	chr10:4243687|4252167:-	KLF6	Kruppel like factor 6	protein coding gene	yes	.	6.162	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GALNT7_LS0003	chr4:173168961|173224114:+	GALNT7	polypeptide N-acetylgalactosaminyltransferase 15	protein coding gene	no	.	2.047	0.203	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_ZBTB46_LS0039	chr20:63767982|63768073:-	ZBTB46	zinc finger and BTB domain containing 46	protein coding gene	no	.	2.212	0.757	0.000	0.104(994)	0.177(124)	0(0)	non tumor-specific	exon_skip;intron_retention	no
CEBPZOS_LS015	chr2:37213554|37215321:+	CEBPZOS	CEBPZ opposite strand	protein coding gene	no	ENST00000438935.2	1.193	0.652	1.314	0.355(3403)	0.387(272)	0.675(11731)	non tumor-specific	exon_skip	yes
UN_IL27RA_LS0018	chr19:14051973|14052100:+	IL27RA	interleukin 27 receptor subunit alpha	protein coding gene	no	.	4.972	1.166	0.000	0.007(67)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AL157373.2_UP_LS0025	chr6:11951653|11953486:+	AL157373.2	-	lncRNA gene	no	.	2.323	0.478	0.000	0.006(54)	0.01(7)	0(0)	non tumor-specific	nAS	no
TATDN1_LS043	chr8:124523002|124539025:-	TATDN1	TatD DNase domain containing 1	protein coding gene	no	ENST00000630259.1;ENST00000276692.10;ENST00000523214.5;ENST00000522810.5;ENST00000519776.5;ENST00000605953.5;ENST00000522310.5;ENST00000522280.1;ENST00000630259.1;ENST00000276692.10;ENST00000523214.5;ENST00000522810.5;ENST00000519776.5;ENST00000605953.5;ENST00000522310.5;ENST00000522280.1;ENST00000630259.1;ENST00000276692.10;ENST00000523214.5;ENST00000522810.5;ENST00000519776.5;ENST00000605953.5;ENST00000522310.5;ENST00000522280.1	37.253	20.827	27.192	0.934(8952)	0.96(674)	0.973(16909)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
KMT2E_LS009	chr7:105041023|105062164:+	KMT2E	lysine methyltransferase 2E (inactive)	protein coding gene	no	ENST00000311117.7;ENST00000257745.8;ENST00000334884.9;ENST00000495267.5;ENST00000476671.5;ENST00000474203.5;ENST00000482560.6	12.906	10.135	21.135	0.931(8916)	0.963(676)	0.977(16980)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01492_LS002	chr9:103264650|103276031:-	LINC01492	long intergenic non-protein coding RNA 1492	lncRNA gene	no	ENST00000411575.5	159.228	0.000	0.670	0(1)	0(0)	0.002(29)	non tumor-specific	nAS	yes
UN_CORO2B_UP_LS0005	chr15:68509955|68535595:+	CORO2B	coronin 2B	protein coding gene	no	.	2.717	1.660	0.000	0.002(19)	0.03(21)	0(0)	non tumor-specific	nAS	no
UN_LINC01106_LS0004	chr2:110375275|110375596:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	2.070	0.460	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PATL1_LS0032	chr11:59655740|59656499:-	PATL1	PAT1 homolog 1, processing body mRNA decay factor	protein coding gene	no	.	7.255	3.081	0.000	0.2(1916)	0.245(172)	0(0)	non tumor-specific	exon_skip	no
UN_ACACB_LS0076	chr12:109265291|109265389:+	ACACB	acetyl-CoA carboxylase beta	protein coding gene	no	.	2.964	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
HSD17B7_LS007	chr1:162795663|162796585:+	HSD17B7	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	protein coding gene	no	ENST00000463037.5;ENST00000466176.5	0.022	0.025	0.690	0.045(428)	0.04(28)	0.085(1474)	non tumor-specific	exon_skip	yes
EHMT2_LS035	chr6:31896824|31896923:-	EHMT2	euchromatic histone lysine methyltransferase 2	protein coding gene	no	ENST00000395728.7;ENST00000375528.8;ENST00000375530.8;ENST00000375537.8;ENST00000465429.1	18.743	11.152	12.352	0.976(9348)	0.979(687)	0.974(16938)	non tumor-specific	exon_skip	yes
AL161725.1_LS017	chr9:466069|469722:-	AL161725.1	-	lncRNA gene	no	ENST00000591577.5;ENST00000589387.5	0.017	0.000	0.890	0.001(8)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_MRGBP_LS0003	chr20:62796538|62796626:+	MRGBP	MRG domain binding protein	protein coding gene	no	.	2.652	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NES_LS0035	chr1:156670395|156670456:-	NES	nestin	protein coding gene	no	.	33.964	3.919	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AIDA_UP_LS0037	chr1:223095992|223103123:-	AIDA	axin interactor, dorsalization associated	protein coding gene	no	.	2.623	0.439	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PAX8_LS0104	chr2:113227183|113235404:+	PAX8	paired box 8	protein coding gene	yes	.	2.497	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HECTD3_LS0011	chr1:45002818|45003060:+	HECTD3	HECT domain E3 ubiquitin protein ligase 3	protein coding gene	no	.	1.646	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LAMA4_LS0012	chr6:112119311|112119866:-	LAMA4	laminin subunit alpha 4	protein coding gene	no	.	0.918	0.029	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CHD8_LS027	chr14:21405464|21405721:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	ENST00000430710.8;ENST00000399982.6;ENST00000646647.1;ENST00000645206.1;ENST00000645929.1;ENST00000557364.6;ENST00000643469.1;ENST00000555935.2;ENST00000646340.1;ENST00000645140.1	21.752	14.822	15.228	0.908(8704)	0.969(680)	0.975(16944)	non tumor-specific	nAS	yes
CHRDL2_LS020	chr11:74710991|74718720:-	CHRDL2	chordin like 2	protein coding gene	no	ENST00000376324.7;ENST00000528471.1	0.112	0.053	0.769	0.056(541)	0.088(62)	0.039(674)	non tumor-specific	exon_skip	yes
RBMS3_LS005	chr3:28576496|28865224:+	RBMS3	RNA binding motif single stranded interacting protein 3	protein coding gene	yes	ENST00000636680.1	0.750	0.000	0.842	0.001(14)	0(0)	0.106(1849)	non tumor-specific	nAS	yes
FABP5P3_LS001	chr7:152437028|152442295:+	FABP5P3	fatty acid binding protein 5 pseudogene 3	pseudogene	no	ENST00000477993.2	0.195	0.007	0.664	0.009(82)	0.007(5)	0.005(88)	non tumor-specific	nAS	yes
RHOXF2_LS001	chrX:120158829|120159015:+	RHOXF2	Rhox homeobox family member 2	protein coding gene	no	ENST00000371388.4	3.847	0.743	0.712	0.033(319)	0.004(3)	0.009(163)	non tumor-specific	nAS	yes
UN_WDR89_LS0009	chr14:63604061|63624928:-	WDR89	WD repeat domain 89	protein coding gene	no	.	0.707	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM50A_LS0013	chrX:154448560|154448693:+	FAM50A	family with sequence similarity 50 member A	protein coding gene	no	.	29.815	4.449	0.000	0.028(268)	0.02(14)	0(0)	non tumor-specific	alt_3prime	no
AC073332.1_LS007	chr7:17280304|17281241:-	AC073332.1	-	lncRNA gene	no	ENST00000443664.1	0.173	0.060	0.728	0.016(157)	0.023(16)	0.01(166)	non tumor-specific	nAS	yes
UN_USP21_UP_LS0005	chr1:161133586|161153926:+	USP21	ubiquitin specific peptidase 25	protein coding gene	no	.	6.044	1.429	0.000	0.009(90)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC105053.1_LS002	chr2:85818396|85823996:+	AC105053.1	-	lncRNA gene	no	ENST00000366278.2	0.254	0.205	0.830	0.027(261)	0.105(74)	0.286(4972)	non tumor-specific	nAS	yes
OSBPL1A_LS046	chr18:24377535|24397655:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	ENST00000319481.7;ENST00000579851.5;ENST00000578091.5;ENST00000582645.5;ENST00000579764.5;ENST00000582350.5;ENST00000582618.1	4.547	2.051	4.141	0.779(7467)	0.849(596)	0.895(15554)	non tumor-specific	alt_5prime	yes
UN_MPHOSPH6_LS0004	chr16:82151337|82151424:-	MPHOSPH6	M-phase phosphoprotein 6	protein coding gene	no	.	2.263	0.399	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AF165147.1_LS0001	chr21:28444195|28446290:-	AF165147.1	-	lncRNA gene	no	.	1.492	1.155	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
TNFSF14_LS001	chr19:6665350|6667113:-	TNFSF14	TNF superfamily member 14	protein coding gene	no	ENST00000245912.7;ENST00000599359.1	2.450	1.320	2.560	0.328(3144)	0.365(256)	0.626(10885)	non tumor-specific	nAS	yes
SMAD7_LS008	chr18:48948437|48949229:-	SMAD7	SMAD family member 7	protein coding gene	no	ENST00000591805.5	0.138	0.451	1.026	0.417(3998)	0.665(467)	0.422(7336)	non tumor-specific	alt_3prime;alt_5prime	yes
RASEF_LS002	chr9:82990467|82992906:-	RASEF	RAS and EF-hand domain containing	protein coding gene	no	ENST00000376447.3	16.526	14.785	3.495	0.749(7173)	0.863(606)	0.443(7706)	non tumor-specific	alt_5prime;exon_skip	yes
UN_VAC14_LS0109	chr16:70800952|70801011:-	VAC14	VAC14 component of PIKFYVE complex	protein coding gene	no	.	1.027	0.449	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TOMM40_LS0040	chr19:44903165|44903246:-	TOMM40	translocase of outer mitochondrial membrane 40	protein coding gene	no	.	4.261	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PARD3_LS0013	chr10:34312382|34313100:-	PARD3	par-3 family cell polarity regulator	protein coding gene	no	.	0.754	0.623	0.000	0.002(23)	0.011(8)	0(0)	non tumor-specific	exon_skip;intron_retention	no
AC025437.3_LS001	chr5:158225506|158226287:-	AC025437.3	-	lncRNA gene	no	ENST00000523178.1	2.160	0.000	0.759	0.001(5)	0(0)	0.001(26)	non tumor-specific	nAS	yes
YBEY_LS003	chr21:46286415|46286870:+	YBEY	ybeY metalloendoribonuclease	protein coding gene	no	ENST00000397701.8;ENST00000468924.5;ENST00000397694.5;ENST00000397692.5;ENST00000397701.8;ENST00000468924.5;ENST00000397694.5;ENST00000397692.5	22.584	12.540	17.630	0.904(8664)	0.917(644)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CSNK1D_LS0069	chr17:82256505|82265686:-	CSNK1D	casein kinase 1 delta	protein coding gene	no	.	5.500	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ARMC10_LS013	chr7:103083132|103083682:+	ARMC10	armadillo repeat containing 10	protein coding gene	yes	ENST00000306450.5	0.403	0.103	0.894	0.039(377)	0.04(28)	0.449(7796)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_C4A_LS0005	chr6:31983705|31991399:-	C4A	complement C4A (Rodgers blood group)	protein coding gene	no	.	0.717	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC006059.1_LS001	chr3:42602097|42612292:-	AC006059.1	-	lncRNA gene	no	ENST00000438017.5	0.096	0.036	1.654	0.072(686)	0.033(23)	0.229(3974)	non tumor-specific	nAS	yes
CHD6_LS035	chr20:41497501|41498168:-	CHD6	chromodomain helicase DNA binding protein 6	protein coding gene	no	ENST00000373233.7;ENST00000440697.5;ENST00000309279.11;ENST00000470470.1	8.321	5.580	5.433	0.915(8766)	0.937(658)	0.945(16418)	non tumor-specific	intron_retention	yes
UN_AL645728.1_UP_LS0424	chr1:1482291|1518956:+	AL645728.1	-	lncRNA gene	no	.	19.287	1.942	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
GRIA4_LS004	chr11:105611085|105612276:+	GRIA4	glutamate ionotropic receptor AMPA type subunit 4	protein coding gene	no	ENST00000527177.5;ENST00000393125.6;ENST00000531986.5;ENST00000282499.9;ENST00000393127.6;ENST00000527669.1;ENST00000525921.1;ENST00000525032.1;ENST00000428631.6;ENST00000531011.5;ENST00000525187.5;ENST00000530497.1	12.741	3.756	3.941	0.161(1539)	0.276(194)	0.32(5560)	non tumor-specific	nAS	yes
AP001107.2_LS001	chr11:66277024|66277169:-	AP001107.2	-	lncRNA gene	no	ENST00000528650.1	7.825	3.889	7.663	0.886(8493)	0.909(638)	0.978(16998)	non tumor-specific	nAS	yes
UN_PITX1_LS0046	chr5:135031508|135031688:-	PITX1	paired like homeodomain 1	protein coding gene	no	.	2.207	0.203	0.000	0.005(49)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
MED13L_LS018	chr12:115991957|115996476:-	MED13L	mediator complex subunit 13L	protein coding gene	no	ENST00000281928.8;ENST00000648379.1;ENST00000650226.1;ENST00000649607.1;ENST00000648737.1;ENST00000648916.1;ENST00000549786.2;ENST00000548743.2;ENST00000648173.1	29.926	22.270	18.980	0.846(8106)	0.954(670)	0.973(16917)	non tumor-specific	nAS	yes
UN_AF064858.3_UP_LS0032	chr21:39024055|39028525:-	AF064858.3	-	lncRNA gene	no	.	1.188	0.206	0.000	0.014(136)	0.03(21)	0(0)	non tumor-specific	nAS	no
UN_RPL4_LS0033	chr15:66499507|66499565:+	RPL4	ribosomal protein L4	protein coding gene	no	.	184.296	39.469	0.000	0.016(158)	0.023(16)	0(0)	non tumor-specific	nAS	no
GRHPR_LS008	chr9:37426654|37428484:+	GRHPR	glyoxylate and hydroxypyruvate reductase	protein coding gene	no	ENST00000493368.5;ENST00000318158.10;ENST00000460882.5;ENST00000377824.8;ENST00000607784.1	190.331	198.667	140.775	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MMP14_LS0213	chr14:22846899|22846945:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	20.274	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CDK11A_LS007	chr1:1704344|1704550:-	CDK11A	cyclin dependent kinase 11A	protein coding gene	no	ENST00000356200.7;ENST00000356937.7;ENST00000378638.6;ENST00000509982.5;ENST00000404249.7;ENST00000460465.5;ENST00000357760.6;ENST00000358779.9;ENST00000378633.5;ENST00000495016.5;ENST00000464748.1;ENST00000489300.1	8.885	6.298	22.534	0.996(9547)	0.997(700)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MIR1233-1_UP_LS0097	chr15:34386667|34531648:-	MIR1233-1	microRNA 1233-1	small non-coding RNA gene	no	.	40.256	3.897	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
ITGB4_LS007	chr17:75727505|75727651:+	ITGB4	integrin subunit beta 4	protein coding gene	no	ENST00000579662.5;ENST00000200181.7;ENST00000450894.7;ENST00000580542.5;ENST00000449880.6;ENST00000584558.5	45.374	24.743	13.111	0.855(8189)	0.916(643)	0.9(15636)	non tumor-specific	alt_3prime	yes
UN_FUT9_LS0019	chr6:96121121|96151780:+	FUT9	fucosyltransferase 9	protein coding gene	no	.	2.494	0.424	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
YES1_LS008	chr18:746051|747920:-	YES1	YES proto-oncogene 1, Src family tyrosine kinase	protein coding gene	yes	ENST00000577961.5;ENST00000584307.5;ENST00000314574.4	31.566	26.382	12.701	0.94(9010)	0.984(691)	0.953(16557)	non tumor-specific	exon_skip	yes
UN_DPEP1_LS0013	chr16:89626263|89630305:+	DPEP1	dipeptidase 1	protein coding gene	no	.	1.448	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
CCP110_LS007	chr16:19525224|19525719:+	CCP110	centriolar coiled-coil protein 110	protein coding gene	no	ENST00000573412.1	0.203	0.108	0.696	0.095(910)	0.103(72)	0.119(2075)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_SLC27A1_LS0039	chr19:17504829|17504975:-	SLC27A1	solute carrier family 27 member 1	protein coding gene	no	.	1.280	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VPS13C_LS059	chr15:61954554|61958608:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	ENST00000644861.1;ENST00000249837.7;ENST00000261517.9;ENST00000650094.1;ENST00000645819.1;ENST00000395896.8;ENST00000395898.3;ENST00000558088.1	6.588	4.578	4.181	0.558(5343)	0.791(555)	0.852(14812)	non tumor-specific	exon_skip	yes
PHTF2_LS007	chr7:77893664|77893982:+	PHTF2	putative homeodomain transcription factor 2	protein coding gene	no	ENST00000416283.6;ENST00000422959.6;ENST00000450574.5;ENST00000248550.7	0.285	6.305	7.577	0.01(95)	0.027(19)	0.073(1273)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MIR29B2CHG_LS0019	chr1:207819146|207822204:-	MIR29B2CHG	MIR29B2 and MIR29C host gene	lncRNA gene	no	.	1.537	0.439	0.000	0.008(75)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_MUC20-OT1_UP_LS0018	chr3:195645622|195645717:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	.	1.253	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CTDSPL_LS004	chr3:37944804|37947057:+	CTDSPL	CTD small phosphatase like	protein coding gene	yes	ENST00000486978.5	0.034	0.052	0.708	0.439(4203)	0.595(418)	0.151(2617)	non tumor-specific	nAS	yes
UN_AC090578.1_LS0011	chr8:88685803|88700292:+	AC090578.1	-	lncRNA gene	no	.	3.066	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
MUC2_LS018	chr11:1085845|1086246:+	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	ENST00000361558.7	17.519	22.556	8.840	0.095(906)	0.091(64)	0.039(685)	non tumor-specific	nAS	yes
RABGAP1L_LS001	chr1:174159657|174219125:+	RABGAP1L	RAB GTPase activating protein 1 like	protein coding gene	no	ENST00000357444.10;ENST00000251507.8;ENST00000635248.1;ENST00000457696.1	4.507	2.573	4.768	0.813(7794)	0.899(631)	0.934(16237)	non tumor-specific	alt_5prime;exon_skip	yes
AOX1_LS020	chr2:200620819|200621120:+	AOX1	aldehyde oxidase 1	protein coding gene	no	ENST00000374700.6;ENST00000465297.5	14.887	74.265	23.146	0.451(4318)	0.929(652)	0.874(15184)	non tumor-specific	exon_skip	yes
UN_HLA-H_LS0040	chr6:29890296|29890390:+	HLA-H	major histocompatibility complex, class I, H (pseudogene)	pseudogene	no	.	2.382	0.022	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF484_LS003	chr9:92856318|92862140:-	ZNF484	zinc finger protein 484	protein coding gene	no	ENST00000395506.7	0.101	0.104	0.846	0.258(2475)	0.386(271)	0.402(6992)	non tumor-specific	exon_skip	yes
GAN_LS009	chr16:81365110|81365350:+	GAN	gigaxonin	protein coding gene	no	ENST00000568107.3;ENST00000648349.1;ENST00000648994.1;ENST00000650388.1	3.122	1.858	1.665	0.577(5533)	0.6(421)	0.742(12901)	non tumor-specific	nAS	yes
RBM44_LS003	chr2:237813682|237820175:+	RBM44	RNA binding motif protein 44	protein coding gene	no	ENST00000444524.2;ENST00000611254.1	0.180	0.014	0.631	0.001(11)	0.001(1)	0.006(99)	non tumor-specific	nAS	yes
PPIP5K2_LS013	chr5:103148032|103149152:+	PPIP5K2	diphosphoinositol pentakisphosphate kinase 2	protein coding gene	no	ENST00000321521.13;ENST00000507921.5;ENST00000358359.7;ENST00000613674.4;ENST00000414217.5;ENST00000627916.2	11.719	7.408	5.226	0.845(8100)	0.952(668)	0.917(15933)	non tumor-specific	nAS	yes
UN_AL133380.1_UP_LS0003	chr1:233321155|233326940:-	AL133380.1	-	pseudogene	no	.	0.944	0.525	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
FAM151B_LS013	chr5:80519910|80522003:+	FAM151B	family with sequence similarity 151 member B	protein coding gene	no	ENST00000282226.4;ENST00000511718.5;ENST00000509292.1	1.269	0.763	2.324	0.664(6365)	0.714(501)	0.87(15122)	non tumor-specific	exon_skip	yes
UN_ANKRD52_LS0075	chr12:56250716|56252015:-	ANKRD52	ankyrin repeat domain 52	protein coding gene	no	.	3.407	1.743	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RELA_LS0082	chr11:65658499|65658647:-	RELA	RELA proto-oncogene, NF-kB subunit	protein coding gene	no	.	7.409	1.023	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
NUAK1_LS001	chr12:106067955|106070774:-	NUAK1	NUAK family kinase 1	protein coding gene	yes	ENST00000261402.6;ENST00000549704.1;ENST00000548902.1	9.357	12.812	15.362	0.859(8230)	0.942(661)	0.93(16167)	non tumor-specific	exon_skip	yes
TNFAIP3_LS010	chr6:137877256|137878432:+	TNFAIP3	TNF alpha induced protein 3	protein coding gene	yes	ENST00000612899.4;ENST00000237289.8;ENST00000614035.4;ENST00000621150.3;ENST00000619035.4;ENST00000615468.4;ENST00000620204.3;ENST00000485192.1	27.833	22.315	20.105	0.969(9280)	0.991(696)	0.955(16601)	non tumor-specific	intron_retention	yes
SNRK_LS015	chr3:43343478|43347339:+	SNRK	SNF related kinase	protein coding gene	no	ENST00000454177.5;ENST00000429705.6;ENST00000296088.11;ENST00000437827.1;ENST00000481892.1	26.266	26.263	18.474	0.946(9061)	0.981(689)	0.977(16984)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_AC011604.2_LS0001	chr12:20819397|20822541:+	AC011604.2	-	protein coding gene	no	.	1.566	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
DBF4_LS013	chr7:87900349|87900764:+	DBF4	DBF4 zinc finger	protein coding gene	no	ENST00000413643.5;ENST00000265728.5;ENST00000431138.5;ENST00000430279.5;ENST00000498144.5;ENST00000498726.1	18.624	4.136	7.466	0.966(9258)	0.959(673)	0.968(16822)	non tumor-specific	nAS	yes
CCDC80_LS009	chr3:112639916|112640564:-	CCDC80	coiled-coil domain containing 80	protein coding gene	no	ENST00000475181.1	0.398	0.302	1.917	0.519(4969)	0.67(470)	0.553(9620)	non tumor-specific	alt_5prime	yes
UN_RPS28_UP_LS0016	chr19:8277578|8292412:+	RPS28	ribosomal protein S28	protein coding gene	no	.	1.353	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
POM121B_LS006	chr7:73298439|73300515:+	POM121B	POM121 transmembrane nucleoporin B (pseudogene)	pseudogene	no	ENST00000380760.3	16.907	0.352	0.601	0.003(26)	0.001(1)	0.016(272)	non tumor-specific	nAS	yes
AP4E1_LS023	chr15:50993625|50997326:+	AP4E1	adaptor related protein complex 4 subunit epsilon 1	protein coding gene	no	ENST00000561393.5;ENST00000558439.5;ENST00000261842.9;ENST00000560508.1	5.500	3.778	5.513	0.76(7280)	0.882(619)	0.923(16049)	non tumor-specific	nAS	yes
UN_KANSL1_UP_LS0007	chr17:46240712|46241399:-	KANSL1	KAT8 regulatory NSL complex subunit 1	protein coding gene	no	.	3.443	0.037	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
VPS13B_LS072	chr8:99868465|99870785:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	ENST00000357162.6;ENST00000358544.6;ENST00000493587.1	17.922	10.976	17.265	0.976(9352)	0.989(694)	0.978(16997)	non tumor-specific	alt_3prime;exon_skip	yes
AP000317.2_LS004	chr21:34262921|34293681:+	AP000317.2	-	lncRNA gene	no	ENST00000362077.4	0.998	0.499	1.384	0.087(830)	0.182(128)	0.556(9670)	non tumor-specific	nAS	yes
SULT4A1_LS007	chr22:43826113|43829060:-	SULT4A1	sulfotransferase family 4A member 1	protein coding gene	no	ENST00000330884.8;ENST00000432404.5;ENST00000330884.8;ENST00000432404.5;ENST00000330884.8;ENST00000432404.5	2.344	23.537	5.200	0.166(1588)	0.081(57)	0.333(5780)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ZNF862_LS0024	chr7:149850338|149852819:+	ZNF862	zinc finger protein 862	protein coding gene	no	.	1.911	0.636	0.000	0.059(564)	0.085(60)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BLZF1_LS008	chr1:169378529|169380481:+	BLZF1	basic leucine zipper nuclear factor 1	protein coding gene	no	ENST00000367808.7;ENST00000329281.6;ENST00000426663.1	27.415	18.112	17.292	0.988(9463)	0.994(698)	0.975(16956)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC026785.3_LS0002	chr5:17370421|17375458:-	AC026785.3	-	lncRNA gene	no	.	3.333	0.100	0.000	0.024(232)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMC5_LS0017	chr9:70286879|70297966:+	SMC5	structural maintenance of chromosomes 5	protein coding gene	no	.	1.408	0.901	0.000	0.145(1388)	0.187(131)	0(0)	non tumor-specific	exon_skip	no
UN_IPO11_LS0044	chr5:62579483|62591577:+	IPO11	importin 11	protein coding gene	no	.	3.986	2.221	0.000	0.007(63)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC090692.1_LS002	chr11:35918114|35918581:-	AC090692.1	-	lncRNA gene	no	ENST00000531569.1;ENST00000525363.1	2.450	0.059	1.279	0.127(1219)	0.019(13)	0.089(1550)	non tumor-specific	nAS	yes
UN_LINC00884_LS0005	chr3:194498135|194505535:+	LINC00884	long intergenic non-protein coding RNA 884	lncRNA gene	no	.	0.816	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
GCOM1_LS028	chr15:57684674|57701553:+	GCOM1	RNA polymerase II subunit M	protein coding gene	no	ENST00000460962.5	0.092	0.027	0.649	0.002(17)	0.004(3)	0.016(271)	non tumor-specific	exon_skip	yes
UN_CWC25_LS0001	chr17:38800828|38801351:+	CWC25	CWC25 spliceosome associated protein homolog	protein coding gene	no	.	3.026	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CD72_LS007	chr9:35616689|35617176:-	CD72	CD72 molecule	protein coding gene	no	ENST00000396757.5;ENST00000259633.8;ENST00000612238.4;ENST00000490239.5;ENST00000463720.5;ENST00000477364.5;ENST00000378431.5;ENST00000465754.6	8.016	1.629	2.485	0.785(7518)	0.772(542)	0.823(14301)	non tumor-specific	alt_5prime;intron_retention	yes
UN_WIPF3_UP_LS0006	chr7:29785537|29789605:+	WIPF3	WAS/WASL interacting protein family member 3	protein coding gene	no	.	4.117	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PLXDC2_LS010	chr10:20177094|20177328:+	PLXDC2	plexin domain containing 2	protein coding gene	no	ENST00000377242.7;ENST00000377252.4;ENST00000377238.2	43.985	31.596	24.271	0.922(8837)	0.979(687)	0.966(16784)	non tumor-specific	nAS	yes
UN_LINC01146_LS0027	chr14:88085036|88086828:+	LINC01146	long intergenic non-protein coding RNA 1146	lncRNA gene	no	.	2.318	0.363	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MARCO_UP_LS0028	chr2:118836264|118836539:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	.	2.004	0.202	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMEM254_LS0008	chr10:80082026|80082145:+	TMEM254	transmembrane protein 254	protein coding gene	no	.	3.891	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_5prime	no
AC006974.2_LS001	chr7:148567840|148568100:-	AC006974.2	-	lncRNA gene	no	ENST00000637240.1	3.300	0.000	0.697	0.001(6)	0(0)	0.013(222)	non tumor-specific	nAS	yes
UN_YWHAQ_LS0023	chr2:9584647|9584880:+	YWHAQ	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein coding gene	yes	.	7.166	1.137	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SF3A1_LS0006	chr22:30334497|30334552:+	SF3A1	splicing factor 3a subunit 1	protein coding gene	no	.	1.864	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
GSN_LS057	chr9:121310845|121312339:+	GSN	gelsolin	protein coding gene	yes	ENST00000373823.7;ENST00000432226.5;ENST00000373808.8;ENST00000477863.5;ENST00000449733.7;ENST00000477104.2;ENST00000394353.7;ENST00000545652.6;ENST00000373818.8	407.465	608.394	844.869	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GRIA3_LS022	chrX:123465788|123480063:+	GRIA3	glutamate ionotropic receptor AMPA type subunit 3	protein coding gene	no	ENST00000620581.4	1.220	0.501	1.054	0.077(740)	0.023(16)	0.241(4181)	non tumor-specific	exon_skip	yes
LPP_LS003	chr3:188154021|188341663:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	ENST00000454789.5	0.076	0.019	0.649	0.099(944)	0.14(98)	0.079(1381)	non tumor-specific	alt_3prime	yes
UN_PIGG_LS0033	chr4:527487|530436:+	PIGG	phosphatidylinositol glycan anchor biosynthesis class G	protein coding gene	no	.	3.969	1.604	0.000	0.049(469)	0.064(45)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_TXNRD3_LS0016	chr3:126622540|126623725:-	TXNRD3	thioredoxin reductase 3	protein coding gene	no	.	1.468	0.025	0.000	0.012(116)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
MMP2_LS019	chr16:55497062|55498289:+	MMP2	matrix metallopeptidase 2	protein coding gene	no	ENST00000570308.5;ENST00000219070.8;ENST00000543485.5;ENST00000437642.6;ENST00000570283.1	301.817	247.174	255.309	0.99(9484)	0.996(699)	0.967(16801)	non tumor-specific	nAS	yes
UN_RHBDD1_LS0037	chr2:226970631|226980117:-	RHBDD1	rhomboid domain containing 1	protein coding gene	no	.	2.887	1.367	0.000	0.043(408)	0.148(104)	0(0)	non tumor-specific	nAS	no
UN_TAPT1_LS0002	chr4:16162228|16162295:+	TAPT1	transmembrane anterior posterior transformation 1	protein coding gene	no	.	3.163	1.207	0.000	0.012(111)	0.021(15)	0(0)	non tumor-specific	nAS	no
NR1H3_LS020	chr11:47257735|47259180:+	NR1H3	nuclear receptor subfamily 1 group H member 3	protein coding gene	no	.;.	1.583	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
STYK1_LS011	chr12:10634686|10667289:-	STYK1	serine/threonine/tyrosine kinase 1	protein coding gene	yes	ENST00000542562.5	0.083	0.109	0.745	0.078(750)	0.1(70)	0.029(496)	non tumor-specific	exon_skip	yes
HSDL2_LS005	chr9:112405722|112418860:+	HSDL2	hydroxysteroid dehydrogenase like 2	protein coding gene	no	ENST00000398803.1	0.375	0.301	1.332	0.716(6858)	0.869(610)	0.653(11345)	non tumor-specific	exon_skip	yes
UN_RPS2P46_LS0084	chr17:19446695|19446759:-	RPS2P46	ribosomal protein S2 pseudogene 46	pseudogene	no	.	8.735	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KLHL20_LS0008	chr1:173716066|173751764:+	KLHL20	kelch like family member 20	protein coding gene	no	.	0.956	0.170	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
C3_LS056	chr19:6714248|6714352:-	C3	complement C3	protein coding gene	no	ENST00000245907.10	163.478	248.489	47.110	0.905(8673)	0.976(685)	0.944(16414)	non tumor-specific	alt_5prime	yes
NOX3_LS013	chr6:155455129|155455753:-	NOX3	NADPH oxidase 3	protein coding gene	no	ENST00000159060.2	8.556	0.000	0.677	0.002(18)	0(0)	0.002(30)	non tumor-specific	nAS	yes
SCRG1_LS008	chr4:173391428|173398262:-	SCRG1	stimulator of chondrogenesis 1	protein coding gene	no	ENST00000512188.1	0.616	0.164	0.818	0.013(127)	0.009(6)	0.146(2537)	non tumor-specific	exon_skip	yes
UN_ANGPTL1_UP_LS0001	chr1:178936978|178937959:-	ANGPTL1	angiopoietin like 1	protein coding gene	no	.	7.928	1.130	0.000	0.009(86)	0.011(8)	0(0)	non tumor-specific	nAS	no
SPAG11A_LS010	chr8:7860422|7860646:+	SPAG11A	sperm associated antigen 11A	protein coding gene	no	ENST00000434307.6;ENST00000454911.6	4.017	0.259	0.810	0.02(189)	0.016(11)	0.012(207)	non tumor-specific	exon_skip	yes
KIZ_LS015	chr20:21205530|21214535:+	KIZ	kizuna centrosomal protein	protein coding gene	no	ENST00000621366.1	9.748	8.281	5.820	0.952(9119)	0.956(671)	0.959(16665)	non tumor-specific	nAS	yes
UN_PRUNE1_LS0024	chr1:151030809|151033806:+	PRUNE1	prune exopolyphosphatase 1	protein coding gene	no	.	1.978	0.220	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
NOTCH4_LS016	chr6:32203882|32204137:-	NOTCH4	notch receptor 4	protein coding gene	yes	ENST00000474612.1;ENST00000375023.3	7.932	7.888	14.302	0.813(7791)	0.912(640)	0.916(15928)	non tumor-specific	nAS	yes
UN_NABP1_UP_LS0015	chr2:191512919|191569521:+	NABP1	nucleic acid binding protein 1	protein coding gene	no	.	3.369	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
LTC4S_LS002	chr5:179794138|179795601:+	LTC4S	leukotriene C4 synthase	protein coding gene	no	ENST00000505170.5	0.058	0.122	0.771	0.369(3537)	0.544(382)	0.276(4789)	non tumor-specific	nAS	yes
UN_NPIPB5_LS0245	chr16:22534993|22536015:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	10.479	0.212	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TMEM175_LS0031	chr4:958370|958416:-	TMEM175	transmembrane protein 175	protein coding gene	no	.	1.507	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
FSCN2_LS005	chr17:81536789|81536875:+	FSCN2	fascin actin-bundling protein 2, retinal	protein coding gene	no	ENST00000417245.6;ENST00000334850.7;ENST00000527221.1	0.736	0.456	1.742	0.631(6043)	0.725(509)	0.706(12280)	non tumor-specific	nAS	yes
CARS_LS003	chr11:3002053|3002521:-	CARS	cysteinyl-tRNA synthetase 1	protein coding gene	no	.;.	5.429	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL592295.4_UP_LS0019	chr1:161398416|161398955:+	AL592295.4	-	lncRNA gene	no	.	1.072	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
PHLPP1_LS016	chr18:62920114|62945109:+	PHLPP1	PH domain and leucine rich repeat protein phosphatase 1	protein coding gene	yes	ENST00000591386.1	0.472	0.267	0.716	0.291(2788)	0.326(229)	0.139(2422)	non tumor-specific	exon_skip	yes
UN_HACD2_LS0003	chr3:123492309|123492514:+	HACD2	3-hydroxyacyl-CoA dehydratase 2	protein coding gene	no	.	0.793	0.708	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CPEB3_LS0006	chr10:92111194|92111472:-	CPEB3	cytoplasmic polyadenylation element binding protein 3	protein coding gene	no	.	2.257	4.670	0.000	0.006(57)	0.074(52)	0(0)	non tumor-specific	nAS	no
RPL23AP82_LS009	chr22:50788798|50788895:+	RPL23AP82	ribosomal protein L23a pseudogene 82	pseudogene	no	ENST00000463325.5;ENST00000423888.5	4.100	2.535	1.559	0.837(8022)	0.88(618)	0.706(12265)	non tumor-specific	nAS	yes
UN_INTS11_LS0034	chr1:1312530|1312815:+	INTS11	integrator complex subunit 11	protein coding gene	no	.	0.651	0.149	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GUCY1B1_LS0015	chr4:155800082|155802342:+	GUCY1B1	guanylate cyclase 1 soluble subunit beta 1	protein coding gene	no	.	2.720	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PAN3_LS0068	chr13:28272071|28277298:+	PAN3	poly(A) specific ribonuclease subunit PAN3	protein coding gene	no	.	2.396	0.857	0.000	0.022(215)	0.044(31)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NR4A1_LS0138	chr12:52057259|52057463:+	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	.	9.062	2.753	0.000	0.005(50)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
AC005476.2_LS003	chr14:71307363|71310558:-	AC005476.2	-	lncRNA gene	no	ENST00000554634.1	1.568	0.559	1.092	0.216(2068)	0.162(114)	0.516(8966)	non tumor-specific	nAS	yes
UN_PTPRN2_LS0227	chr7:158522174|158522222:+	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	.	1.106	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
AGAP3_LS007	chr7:151090547|151116793:+	AGAP3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein coding gene	no	ENST00000476375.5	0.326	0.033	0.690	0.024(232)	0.006(4)	0.074(1282)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MOSMO_LS0027	chr16:22085750|22087124:+	MOSMO	modulator of smoothened	protein coding gene	no	.	2.330	0.223	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_REXO1_LS0034	chr19:1824574|1825839:-	REXO1	RNA exonuclease 1 homolog	protein coding gene	no	.	2.197	0.865	0.000	0.046(442)	0.068(48)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC00907_LS0019	chr18:42651135|42689997:-	LINC00907	long intergenic non-protein coding RNA 907	lncRNA gene	no	.	3.736	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
AL591503.1_LS001	chrX:47298090|47298484:+	AL591503.1	-	lncRNA gene	no	ENST00000366224.2	0.027	0.000	0.599	0.001(8)	0(0)	0(3)	non tumor-specific	nAS	yes
AP005329.2_LS001	chr18:3236538|3245957:+	AP005329.2	-	lncRNA gene	no	ENST00000580139.1	2.275	0.000	0.529	0.001(9)	0(0)	0.002(28)	non tumor-specific	nAS	yes
TRMT11_LS022	chr6:126008472|126011253:+	TRMT11	tRNA methyltransferase 11 homolog	protein coding gene	no	ENST00000334379.10;ENST00000368332.7;ENST00000466316.1;ENST00000334379.10;ENST00000368332.7;ENST00000466316.1;ENST00000334379.10;ENST00000368332.7;ENST00000466316.1	14.467	9.288	17.471	0.985(9436)	0.996(699)	0.968(16825)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CNBD2_LS017	chr20:36023771|36030357:+	CNBD2	cyclic nucleotide binding domain containing 2	protein coding gene	no	ENST00000373973.7;ENST00000349339.5	3.181	0.000	0.708	0.003(32)	0(0)	0.085(1476)	non tumor-specific	exon_skip	yes
UN_NT5C2_LS0018	chr10:103090783|103090936:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	.	9.020	0.961	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
THSD7B_LS027	chr2:137642633|137655501:+	THSD7B	thrombospondin type 1 domain containing 7B	protein coding gene	no	ENST00000409968.5;ENST00000272643.7;ENST00000413152.3;ENST00000480352.1	0.798	0.809	1.249	0.347(3326)	0.553(388)	0.391(6802)	non tumor-specific	nAS	yes
AC011330.1_LS015	chr15:43677296|43677441:-	AC011330.1	-	pseudogene	no	ENST00000510070.1	4.204	3.591	0.718	0.815(7807)	0.89(625)	0.022(385)	non tumor-specific	nAS	yes
UN_LINC00221_LS0014	chr14:106507288|106511408:-	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	13.850	17.240	0.000	0.009(91)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_AC092969.1_UP_LS0006	chr3:135493295|135496269:-	AC092969.1	-	lncRNA gene	no	.	4.713	0.648	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPATCH1_LS003	chr19:33090865|33093359:+	GPATCH1	G-patch domain containing 1	protein coding gene	no	ENST00000170564.6	9.227	5.485	6.269	0.914(8760)	0.954(670)	0.958(16656)	non tumor-specific	exon_skip	yes
AC090409.1_LS002	chr18:61592623|61599147:-	AC090409.1	-	lncRNA gene	no	ENST00000587754.1	0.294	0.000	0.648	0.001(6)	0(0)	0.021(369)	non tumor-specific	nAS	yes
ISCU_LS009	chr12:108564392|108565321:+	ISCU	iron-sulfur cluster assembly enzyme	protein coding gene	no	ENST00000545932.5;ENST00000552072.5;ENST00000535729.5;ENST00000431221.6;ENST00000547005.5;ENST00000311893.13;ENST00000539580.5;ENST00000392807.8;ENST00000539593.1;ENST00000535405.1	366.642	283.518	395.307	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KIAA0586_LS0007	chr14:58430961|58432388:+	KIAA0586	KIAA0586	protein coding gene	no	.	1.484	0.082	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ST3GAL5_LS0036	chr2:85903652|85904985:-	ST3GAL5	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein coding gene	no	.	3.013	1.465	0.000	0.01(98)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC012491.1_UP_LS0001	chr2:210967381|210967846:+	AC012491.1	-	pseudogene	no	.	9.132	3.472	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARFGEF1_LS017	chr8:67227598|67227963:-	ARFGEF1	ADP ribosylation factor guanine nucleotide exchange factor 1	protein coding gene	no	ENST00000520381.5;ENST00000262215.7;ENST00000518230.5	30.843	19.566	13.409	0.961(9208)	0.989(694)	0.975(16947)	non tumor-specific	nAS	yes
MEG8_LS006	chr14:100906163|100906936:+	MEG8	maternally expressed 8, small nucleolar RNA host gene	lncRNA gene	no	ENST00000553584.5;ENST00000554852.5;ENST00000636052.1;ENST00000553465.5;ENST00000554323.1	0.669	0.171	2.001	0.218(2086)	0.218(153)	0.587(10202)	non tumor-specific	nAS	yes
UN_LSM8_UP_LS0012	chr7:118007312|118032363:+	LSM8	LSM8 homolog, U6 small nuclear RNA associated	protein coding gene	no	.	9.847	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC7A2_UP_LS0003	chr8:17494167|17494435:+	SLC7A2	solute carrier family 7 member 2	protein coding gene	no	.	0.812	0.889	0.000	0.001(12)	0.013(9)	0(0)	non tumor-specific	nAS	no
CRNDE_LS010	chr16:54920338|54923585:-	CRNDE	colorectal neoplasia differentially expressed	lncRNA gene	no	ENST00000559432.5	1.994	0.522	2.290	0.655(6280)	0.621(436)	0.577(10030)	non tumor-specific	nAS	yes
UN_MT-TQ_UP_LS0418	chrM:4909|11045:-	MT-TQ	mitochondrially encoded tRNA-Gln (CAA/G)	small non-coding RNA gene	no	.	195.260	75.421	0.000	0.005(51)	0.011(8)	0(0)	non tumor-specific	nAS	no
SNHG20_LS007	chr17:77089271|77093244:+	SNHG20	small nucleolar RNA host gene 20	lncRNA gene	no	ENST00000568363.5;ENST00000564414.5;ENST00000647734.1;ENST00000434411.6;ENST00000649047.1;ENST00000649712.1;ENST00000650557.1;ENST00000648984.1;ENST00000566583.5;ENST00000564509.5;ENST00000561633.5	10.233	4.259	9.731	0.977(9365)	0.969(680)	0.974(16927)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KIAA0319_LS0012	chr6:24583702|24588353:-	KIAA0319	KIAA0319	protein coding gene	no	.	1.352	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AP002990.1_LS0104	chr11:62567013|62571057:+	AP002990.1	-	protein coding gene	no	.	5.288	0.870	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPL31P49_UP_LS0001	chr12:110450302|110450570:+	RPL31P49	ribosomal protein L31 pseudogene 49	pseudogene	no	.	1.220	0.652	0.000	0.014(133)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_FAM204A_UP_LS0013	chr10:118576219|118578757:-	FAM204A	family with sequence similarity 204 member A	protein coding gene	no	.	3.569	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARFGAP1_LS0082	chr20:63289150|63289179:-	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	.	4.909	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AC245128.1_LS001	chr19:54724530|54770849:+	AC245128.1	-	lncRNA gene	no	ENST00000400864.3	2.475	0.045	0.705	0.003(28)	0.001(1)	0.014(245)	non tumor-specific	nAS	yes
UN_SLC35B2_LS0004	chr6:44254410|44254542:+	SLC35B2	solute carrier family 35 member B2	protein coding gene	no	.	1.198	0.048	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
PDK1_LS011	chr2:172562291|172564511:+	PDK1	3-phosphoinositide dependent protein kinase 1	protein coding gene	no	.;.	3.172	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
BCAP29_LS004	chr7:107580366|107580759:+	BCAP29	B cell receptor associated protein 29	protein coding gene	no	ENST00000421217.5	0.103	0.047	0.674	0.311(2979)	0.362(254)	0.084(1465)	non tumor-specific	alt_5prime	yes
ZNF605_LS001	chr12:132927162|132932713:-	ZNF605	zinc finger protein 605	protein coding gene	no	ENST00000392321.3	0.423	0.195	0.824	0.258(2474)	0.292(205)	0.364(6329)	non tumor-specific	nAS	yes
APOC1_LS013	chr19:44916325|44918695:+	APOC1	apolipoprotein C1	protein coding gene	no	.;.	165.245	10.213	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
CEP295_LS040	chr11:93729530|93729614:+	CEP295	centrosomal protein 295	protein coding gene	no	ENST00000325212.10;ENST00000531700.5	9.981	4.153	12.847	0.84(8046)	0.748(525)	0.976(16962)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PSPH_LS002	chr7:56011869|56015023:-	PSPH	phosphoserine phosphatase	protein coding gene	no	ENST00000437355.6;ENST00000275605.7;ENST00000395471.7;ENST00000459834.5	16.169	7.278	9.560	0.971(9307)	0.957(672)	0.964(16751)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_MYL9_LS0006	chr20:36544670|36544859:+	MYL9	myosin light chain 9	protein coding gene	no	.	2.942	1.495	0.000	0.022(215)	0.038(27)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_RN7SL814P_UP_LS0006	chr5:73968655|73976802:+	RN7SL814P	RNA, 7SL, cytoplasmic 814, pseudogene	small non-coding RNA gene	no	.	3.381	1.139	0.000	0.02(187)	0.094(66)	0(0)	non tumor-specific	nAS	no
HDAC7_LS032	chr12:47791706|47791871:-	HDAC7	histone deacetylase 7	protein coding gene	no	ENST00000080059.11;ENST00000354334.7;ENST00000459625.5;ENST00000548938.5;ENST00000470668.5;ENST00000548080.5;ENST00000552960.5;ENST00000477203.6;ENST00000380610.8;ENST00000427332.6;ENST00000488927.2;ENST00000477937.2	39.534	23.604	68.233	0.983(9416)	0.986(692)	0.979(17021)	non tumor-specific	nAS	yes
UN_LINC00351_LS0007	chr13:85491724|85496545:-	LINC00351	long intergenic non-protein coding RNA 351	lncRNA gene	no	.	10.222	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MIR4500HG_LS003	chr13:87445130|87447096:-	MIR4500HG	MIR4500 host gene	lncRNA gene	no	ENST00000436290.2	5.092	0.201	1.052	0.014(131)	0.023(16)	0.066(1140)	non tumor-specific	nAS	yes
PLAC8_LS011	chr4:83134634|83136959:-	PLAC8	placenta associated 8	protein coding gene	yes	ENST00000505406.5	0.571	0.222	0.891	0.032(310)	0.026(18)	0.315(5476)	non tumor-specific	exon_skip	yes
TRIM25_LS005	chr17:56892229|56895343:-	TRIM25	tripartite motif containing 25	protein coding gene	no	ENST00000316881.8;ENST00000537230.2;ENST00000572021.5;ENST00000574234.1	30.315	19.305	20.592	0.974(9333)	0.979(687)	0.977(16980)	non tumor-specific	intron_retention	yes
LINC01505_LS011	chr9:106664877|106666557:+	LINC01505	long intergenic non-protein coding RNA 1505	lncRNA gene	no	ENST00000444985.6	1.437	0.000	0.808	0(3)	0(0)	0.061(1053)	non tumor-specific	nAS	yes
TAF6_LS011	chr7:100112917|100113349:-	TAF6	TATA-box binding protein associated factor 6	protein coding gene	no	ENST00000421980.5;ENST00000453269.6;ENST00000472509.5;ENST00000452041.5;ENST00000344095.8;ENST00000437822.6;ENST00000487288.1;ENST00000493322.5	72.290	41.404	48.276	0.992(9507)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC239799.1_LS0010	chr1:146127079|146132186:-	AC239799.1	-	protein coding gene	no	.	0.462	0.066	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	nAS	no
NPIPB3_LS024	chr16:21425378|21440648:-	NPIPB3	nuclear pore complex interacting protein family member B3	protein coding gene	no	ENST00000521589.5	0.049	0.022	0.688	0.189(1811)	0.16(112)	0.105(1819)	non tumor-specific	nAS	yes
ITGAL_LS053	chr16:30519967|30521492:+	ITGAL	integrin subunit alpha L	protein coding gene	no	ENST00000356798.10;ENST00000358164.9;ENST00000433423.2;ENST00000564632.1	22.333	10.310	3.161	0.921(8824)	0.972(682)	0.804(13971)	non tumor-specific	nAS	yes
MTRR_LS028	chr5:7885854|7889095:+	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein coding gene	no	ENST00000510525.5	5.390	4.684	0.972	0.74(7086)	0.811(569)	0.471(8194)	non tumor-specific	exon_skip	yes
UN_FAM174A_LS0006	chr5:100535584|100535664:-	FAM174A	family with sequence similarity 174 member A	protein coding gene	no	.	1.170	0.477	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
AF279873.4_LS003	chr8:33975543|34009522:-	AF279873.4	-	lncRNA gene	no	ENST00000518163.5	0.088	0.000	0.592	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
ZFYVE26_LS013	chr14:67766447|67767704:-	ZFYVE26	zinc finger FYVE-type containing 26	protein coding gene	no	ENST00000394455.6;ENST00000347230.8;ENST00000554557.5;ENST00000554523.5;ENST00000555452.1	15.729	9.577	10.860	0.856(8200)	0.934(656)	0.974(16929)	non tumor-specific	alt_3prime	yes
CALML4_LS001	chr15:68194112|68197440:-	CALML4	calmodulin like 4	protein coding gene	no	ENST00000478113.1;ENST00000540479.5;ENST00000448060.6;ENST00000395463.2;ENST00000467188.1;ENST00000467889.1	31.563	37.172	17.696	0.984(9429)	0.981(689)	0.978(17004)	non tumor-specific	nAS	yes
LIMA1_LS002	chr12:50182034|50192452:-	LIMA1	LIM domain and actin binding 1	protein coding gene	yes	ENST00000552491.5;ENST00000552909.5	0.604	0.815	4.630	0.9(8625)	0.954(670)	0.875(15212)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TBC1D1_LS0084	chr4:38130632|38133084:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	.	1.697	0.417	0.000	0.007(67)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_NTS_UP_LS0010	chr12:85485700|85702881:+	NTS	neurotensin	protein coding gene	no	.	2.027	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
NCAM2_LS019	chr21:21509055|21534537:+	NCAM2	neural cell adhesion molecule 2	protein coding gene	no	ENST00000400546.5;ENST00000284894.8	21.467	13.940	4.259	0.324(3104)	0.456(320)	0.803(13950)	non tumor-specific	alt_3prime	yes
UN_EEF1A1_LS0268	chr6:73518600|73518736:+	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	protein coding gene	yes	.	45.778	15.231	0.000	0.004(36)	0.017(12)	0(0)	non tumor-specific	nAS	no
TRIM5_LS014	chr11:5667711|5678204:-	TRIM5	tripartite motif containing 5	protein coding gene	no	ENST00000380034.7;ENST00000380027.5;ENST00000396847.7;ENST00000438025.5;ENST00000483835.5;ENST00000380034.7;ENST00000380027.5;ENST00000396847.7;ENST00000438025.5;ENST00000483835.5	12.611	9.964	10.339	0.975(9340)	0.987(693)	0.951(16530)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ESYT1_LS0034	chr12:56142910|56143017:+	ESYT1	extended synaptotagmin 1	protein coding gene	no	.	13.274	5.013	0.000	0.037(353)	0.037(26)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
DMGDH_LS025	chr5:79063787|79069520:-	DMGDH	dimethylglycine dehydrogenase	protein coding gene	no	ENST00000255189.7;ENST00000518477.5;ENST00000517853.5	1.723	4.913	1.155	0.196(1881)	0.484(340)	0.458(7964)	non tumor-specific	exon_skip	yes
RRP12_LS025	chr10:97380913|97381386:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000536831.5;ENST00000315563.10;ENST00000370992.8;ENST00000414986.5	30.508	12.773	10.564	0.974(9331)	0.989(694)	0.974(16922)	non tumor-specific	alt_3prime	yes
SLC4A3_LS037	chr2:219638869|219640430:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	.;.;.	1.791	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TBC1D1_LS0011	chr4:37983257|37986246:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	.	2.667	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SETDB2_LS0027	chr13:49476698|49476822:+	SETDB2	SET domain bifurcated histone lysine methyltransferase 2	protein coding gene	no	.	3.037	0.390	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC078846.1_LS0002	chr7:129607233|129611069:-	AC078846.1	-	lncRNA gene	no	.	2.107	0.075	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
SPIDR_LS015	chr8:47291137|47407861:+	SPIDR	scaffold protein involved in DNA repair	protein coding gene	no	ENST00000524006.5	0.025	0.022	0.810	0.5(4795)	0.534(375)	0.272(4721)	non tumor-specific	exon_skip	yes
UN_FBXL7_LS0039	chr5:15866823|15868968:-	FBXL7	F-box and leucine rich repeat protein 7	protein coding gene	no	.	1.340	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MTCO1P2_UP_LS0004	chr14:33724040|33908432:-	MTCO1P2	MT-CO1 pseudogene 2	pseudogene	no	.	1.331	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NCAPG_LS0021	chr4:17840240|17840607:+	NCAPG	non-SMC condensin I complex subunit G	protein coding gene	no	.	9.913	0.111	0.000	0.01(95)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NBR1_LS021	chr17:43197106|43200167:+	NBR1	NBR1 autophagy cargo receptor	protein coding gene	no	ENST00000341165.10;ENST00000542611.5;ENST00000590996.5;ENST00000589872.1	139.319	115.072	98.662	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AC012184.2_LS006	chr16:70314955|70356112:+	AC012184.2	-	protein coding gene	no	ENST00000443119.7	14.999	12.668	0.566	0(3)	0.001(1)	0.007(122)	non tumor-specific	nAS	yes
LINC02341_LS005	chr13:42437472|42443967:+	LINC02341	long intergenic non-protein coding RNA 2341	lncRNA gene	no	ENST00000637462.1	4.566	0.639	1.226	0.137(1317)	0.007(5)	0.018(316)	non tumor-specific	nAS	yes
UN_GLYATL2_LS0030	chr11:58897194|58899652:-	GLYATL2	glycine-N-acyltransferase like 2	protein coding gene	no	.	1.389	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
ENTPD4_LS016	chr8:23441723|23442007:-	ENTPD4	ectonucleoside triphosphate diphosphohydrolase 4	protein coding gene	no	ENST00000356206.10;ENST00000358689.8;ENST00000417069.6;ENST00000523958.5	26.763	19.111	26.839	0.964(9239)	0.989(694)	0.979(17010)	non tumor-specific	exon_skip	yes
PLIN1_LS007	chr15:89671564|89673210:-	PLIN1	perilipin 1	protein coding gene	no	ENST00000300055.9;ENST00000430628.2	6.104	22.677	4.105	0.196(1874)	0.464(326)	0.848(14745)	non tumor-specific	nAS	yes
LINC01801_LS006	chr19:34829253|34830406:-	LINC01801	long intergenic non-protein coding RNA 1801	lncRNA gene	no	ENST00000590963.1	1.298	0.000	0.654	0.002(22)	0(0)	0.025(443)	non tumor-specific	nAS	yes
TM9SF1_LS006	chr14:24192356|24192648:-	TM9SF1	transmembrane 9 superfamily member 1	protein coding gene	no	ENST00000261789.8;ENST00000528669.5;ENST00000529332.5;ENST00000524835.5;ENST00000396854.8;ENST00000531406.1	94.323	62.744	43.739	0.996(9545)	0.997(700)	0.979(17018)	non tumor-specific	intron_retention	yes
IGDCC3_LS009	chr15:65332106|65333257:-	IGDCC3	immunoglobulin superfamily DCC subclass member 3	protein coding gene	no	ENST00000327987.8;ENST00000558354.5;ENST00000559231.1	4.574	0.715	1.821	0.148(1416)	0.123(86)	0.247(4287)	non tumor-specific	nAS	yes
WDR90_LS006	chr16:651103|651199:+	WDR90	WD repeat domain 90	protein coding gene	no	ENST00000552943.5;ENST00000549091.5;ENST00000549648.5;ENST00000420061.6;ENST00000293879.8	10.621	4.105	8.137	0.8(7667)	0.783(550)	0.937(16281)	non tumor-specific	nAS	yes
DLGAP2_LS014	chr8:1668678|1676533:+	DLGAP2	DLG associated protein 2	protein coding gene	no	ENST00000612087.1;ENST00000520901.5	1.572	0.679	0.773	0.025(237)	0.03(21)	0.089(1547)	non tumor-specific	exon_skip	yes
SETDB2_LS007	chr13:49464056|49467864:+	SETDB2	SET domain bifurcated histone lysine methyltransferase 2	protein coding gene	no	ENST00000354234.8;ENST00000611815.1	1.504	1.000	0.878	0.508(4864)	0.594(417)	0.405(7039)	non tumor-specific	exon_skip	yes
SMC5_LS001	chr9:70259263|70264304:+	SMC5	structural maintenance of chromosomes 5	protein coding gene	no	ENST00000361138.6	11.822	8.382	9.873	0.845(8095)	0.949(666)	0.945(16424)	non tumor-specific	nAS	yes
FLVCR2_LS002	chr14:75579641|75646401:+	FLVCR2	FLVCR heme transporter 2	protein coding gene	no	ENST00000554496.1	0.112	0.080	0.821	0.254(2429)	0.215(151)	0.229(3978)	non tumor-specific	nAS	yes
UN_POMGNT1_LS0028	chr1:46197080|46197702:-	POMGNT1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	protein coding gene	no	.	9.036	4.780	0.000	0.014(131)	0.014(10)	0(0)	non tumor-specific	alt_3prime	no
SMIM11A_LS012	chr21:34399899|34402091:+	SMIM11A	small integral membrane protein 11A	protein coding gene	no	ENST00000481710.5;ENST00000399299.5	4.150	4.311	0.712	0.911(8724)	0.957(672)	0.034(590)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SELENOW_LS003	chr19:47778814|47779648:+	SELENOW	selenoprotein W	protein coding gene	no	ENST00000599302.1	0.032	0.237	0.906	0.37(3542)	0.376(264)	0.507(8813)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
AHI1_LS018	chr6:135318616|135323162:-	AHI1	Abelson helper integration site 1	protein coding gene	yes	ENST00000367800.8;ENST00000457866.6;ENST00000475846.6;ENST00000367799.6;ENST00000265602.10;ENST00000533029.1	10.466	7.177	11.669	0.927(8880)	0.939(659)	0.949(16501)	non tumor-specific	exon_skip;mutex_exons	yes
ENGASE_LS024	chr17:79085734|79087308:+	ENGASE	endo-beta-N-acetylglucosaminidase	protein coding gene	no	.;.;.	6.587	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_YY1_LS0017	chr14:100239706|100239750:+	YY1	YY1 transcription factor	protein coding gene	yes	.	7.449	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ADA_LS004	chr20:44621147|44622829:-	ADA	adenosine deaminase	protein coding gene	no	ENST00000536532.5	1.878	0.342	3.512	0.786(7526)	0.625(439)	0.901(15664)	non tumor-specific	exon_skip	yes
C2CD6_LS001	chr2:201487902|201491169:-	C2CD6	C2 calcium dependent domain containing 6	protein coding gene	no	ENST00000439140.5	0.481	0.000	0.715	0.002(23)	0(0)	0.065(1131)	non tumor-specific	exon_skip	yes
UN_MPHOSPH9_LS0005	chr12:123155200|123155688:-	MPHOSPH9	M-phase phosphoprotein 9	protein coding gene	no	.	2.644	0.657	0.000	0.072(692)	0.053(37)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_BRD7P1_UP_LS0008	chr14:23693346|23696888:+	BRD7P1	bromodomain containing 7 pseudogene 1	pseudogene	no	.	7.080	2.589	0.000	0.009(91)	0.02(14)	0(0)	non tumor-specific	nAS	no
DSP_LS001	chr6:7542085|7555718:+	DSP	desmoplakin	protein coding gene	yes	ENST00000379802.7;ENST00000418664.2	30.858	23.719	3.784	0.727(6968)	0.912(640)	0.708(12302)	non tumor-specific	nAS	yes
UN_SVEP1_LS0003	chr9:110386074|110387283:-	SVEP1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein coding gene	no	.	13.460	5.287	0.000	0.008(72)	0.016(11)	0(0)	non tumor-specific	alt_5prime	no
LINC00514_LS002	chr16:2989552|2989974:+	LINC00514	long intergenic non-protein coding RNA 514	lncRNA gene	no	ENST00000573465.5	2.770	0.000	0.657	0.01(96)	0(0)	0.007(129)	non tumor-specific	nAS	yes
BVES-AS1_LS001	chr6:105136632|105137770:+	BVES-AS1	BVES antisense RNA 1	lncRNA gene	no	ENST00000580511.5	0.056	0.042	0.704	0.039(369)	0.06(42)	0.122(2127)	non tumor-specific	nAS	yes
UN_DGKI_LS0078	chr7:137722323|137722421:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	.	2.032	0.133	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MVB12A_LS0008	chr19:17406296|17420135:+	MVB12A	multivesicular body subunit 12A	protein coding gene	no	.	3.204	0.384	0.000	0.011(106)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_GLT6D1_UP_LS0002	chr9:135699126|135700209:-	GLT6D1	glycosyltransferase 6 domain containing 1	protein coding gene	no	.	3.868	0.443	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC009159.1_UP_LS0004	chr16:79609313|79609479:+	AC009159.1	-	lncRNA gene	no	.	1.969	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00615_UP_LS0010	chr12:90830497|90851587:+	LINC00615	long intergenic non-protein coding RNA 615	lncRNA gene	no	.	3.326	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
C7orf43_LS022	chr7:100157459|100157843:-	C7orf43	microtubule associated protein 11	protein coding gene	no	ENST00000419037.5	0.057	0.049	0.660	0.351(3365)	0.309(217)	0.024(414)	non tumor-specific	exon_skip	yes
UN_MUC20_LS0063	chr3:195733409|195734756:+	MUC20	mucin 20, cell surface associated	protein coding gene	no	.	8.964	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
OGFR_LS001	chr20:62805030|62807537:+	OGFR	opioid growth factor receptor	protein coding gene	no	ENST00000290291.10;ENST00000621591.4	25.223	11.560	38.538	0.904(8663)	0.906(636)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_TPTEP2-CSNK1E_LS0029	chr22:38303009|38303127:-	TPTEP2-CSNK1E	TPTEP2-CSNK1E readthrough	protein coding gene	no	.	6.349	2.488	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
TRMT11_LS015	chr6:125999613|126008392:+	TRMT11	tRNA methyltransferase 11 homolog	protein coding gene	no	ENST00000334379.10;ENST00000461129.5;ENST00000479748.5;ENST00000368332.7	12.818	7.688	14.286	0.981(9399)	0.993(697)	0.966(16793)	non tumor-specific	exon_skip	yes
UN_R3HCC1L_LS0045	chr10:98152812|98156093:+	R3HCC1L	R3H domain and coiled-coil containing 1 like	protein coding gene	no	.	1.065	0.090	0.000	0.018(171)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
COL12A1_LS020	chr6:75105292|75113204:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000416123.6	0.214	0.127	0.619	0.143(1366)	0.135(95)	0.029(507)	non tumor-specific	nAS	yes
UN_PRRC2B_LS0037	chr9:131455166|131459170:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	.	5.999	3.406	0.000	0.113(1079)	0.142(100)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SDCBPP1_UP_LS0005	chr10:6515144|6580775:-	SDCBPP1	syndecan binding protein pseudogene 1	pseudogene	no	.	0.872	0.212	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
CNGB1_LS009	chr16:57904875|57911753:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5;ENST00000569643.1	3.594	0.803	1.536	0.118(1134)	0.023(16)	0.138(2394)	non tumor-specific	nAS	yes
UN_S100A16_LS0089	chr1:153608287|153612952:-	S100A16	S100 calcium binding protein A16	protein coding gene	no	.	6.618	0.569	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NUP35_LS015	chr2:183159652|183161054:+	NUP35	nucleoporin 35	protein coding gene	no	ENST00000409798.5;ENST00000295119.8;ENST00000374930.7	32.125	15.763	19.816	0.966(9251)	0.954(670)	0.974(16931)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DNAJC9_LS008	chr10:73247504|73247809:-	DNAJC9	DnaJ heat shock protein family (Hsp40) member C9	protein coding gene	no	ENST00000512551.1	0.688	0.385	0.904	0.323(3099)	0.194(136)	0.446(7753)	non tumor-specific	intron_retention	yes
PARP6_LS028	chr15:72257440|72258037:-	PARP6	poly(ADP-ribose) polymerase family member 6	protein coding gene	no	ENST00000569795.5;ENST00000616176.4;ENST00000260376.11;ENST00000413097.6;ENST00000287196.13;ENST00000564610.5;ENST00000567974.5;ENST00000544520.5;ENST00000565443.5;ENST00000567440.5;ENST00000419739.7	26.984	15.137	98.479	0.983(9414)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_SLC22A16_LS0012	chr6:110473409|110476522:-	SLC22A16	solute carrier family 22 member 16	protein coding gene	no	.	1.574	0.629	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PCBP2_LS0016	chr12:53461143|53462481:-	PCBP2	poly(rC) binding protein 2	protein coding gene	no	.	5.603	0.256	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAH6_LS051	chr2:84697727|84699594:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	ENST00000389394.7;ENST00000237449.10	2.573	1.616	1.129	0.045(435)	0.164(115)	0.319(5545)	non tumor-specific	nAS	yes
EEA1_LS034	chr12:92905596|92929043:-	EEA1	early endosome antigen 1	protein coding gene	no	ENST00000547833.5	0.214	0.037	0.621	0.032(308)	0.051(36)	0.061(1059)	non tumor-specific	exon_skip	yes
UN_VPS8_LS0031	chr3:184929664|184930520:+	VPS8	VPS8 subunit of CORVET complex	protein coding gene	no	.	1.254	0.131	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
AL392172.1_LS014	chr1:222815171|222835119:+	AL392172.1	-	lncRNA gene	no	ENST00000420335.5	1.334	0.721	1.156	0.733(7025)	0.768(539)	0.602(10462)	non tumor-specific	alt_5prime;exon_skip	yes
IL2_LS002	chr4:122453853|122456144:-	IL2	interleukin 2	protein coding gene	no	ENST00000226730.4;ENST00000477645.1	0.348	0.190	0.812	0.084(802)	0.195(137)	0.114(1988)	non tumor-specific	nAS	yes
UN_C3orf67_LS0014	chr3:58831889|58842412:-	C3orf67	CFAP20 domain containing	protein coding gene	no	.	1.428	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
BCKDHA_LS009	chr19:41414157|41419135:+	BCKDHA	branched chain keto acid dehydrogenase E1 subunit alpha	protein coding gene	no	ENST00000269980.6;ENST00000538423.5;ENST00000542943.5;ENST00000457836.6	83.437	66.601	60.015	0.995(9532)	0.993(697)	0.979(17021)	non tumor-specific	exon_skip	yes
CFAP44_LS039	chr3:113400000|113400545:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	ENST00000393845.8;ENST00000488854.6;ENST00000295868.6;ENST00000465186.1	2.562	0.904	3.432	0.249(2390)	0.272(191)	0.874(15199)	non tumor-specific	nAS	yes
AKAP11_LS006	chr13:42297182|42298533:+	AKAP11	A-kinase anchoring protein 11	protein coding gene	no	ENST00000025301.3	6.296	5.640	3.959	0.772(7393)	0.913(641)	0.879(15279)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRCP_LS0024	chr11:82850505|82859977:-	PRCP	prolylcarboxypeptidase	protein coding gene	no	.	8.215	0.143	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_SUMF1_LS0055	chr3:4028052|4030038:+	SUMF1	sulfatase modifying factor 1	protein coding gene	no	.	1.679	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TTC39A_LS0021	chr1:51311321|51312078:-	TTC39A	tetratricopeptide repeat domain 39A	protein coding gene	no	.	4.468	0.586	0.000	0.006(59)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
AC008969.1_LS009	chr19:58003336|58009331:+	AC008969.1	-	lncRNA gene	no	ENST00000547364.1	0.254	0.139	0.741	0.214(2048)	0.285(200)	0.274(4756)	non tumor-specific	alt_5prime;exon_skip	yes
C21orf58_LS028	chr21:46318220|46322639:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	ENST00000397682.7;ENST00000291691.11;ENST00000475776.1;ENST00000397682.7;ENST00000291691.11;ENST00000475776.1;ENST00000397682.7;ENST00000291691.11;ENST00000475776.1	0.570	0.443	1.388	0.631(6047)	0.425(298)	0.695(12074)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ANO1_LS0069	chr11:70173146|70175122:-	ANO1	anoctamin 1	protein coding gene	no	.	2.053	0.784	0.000	0.011(108)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_UBC_LS0161	chr12:124912180|124912584:-	UBC	ubiquitin C	protein coding gene	no	.	218.948	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAP3K13_LS0088	chr3:185417969|185418252:+	MAP3K13	mitogen-activated protein kinase kinase kinase 13	protein coding gene	no	.	2.903	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC026464.4_UP_LS0002	chr16:69168998|69245602:+	AC026464.4	-	protein coding gene	no	.	0.928	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC61_LS012	chr19:46008301|46016694:+	CCDC61	coiled-coil domain containing 61	protein coding gene	no	ENST00000536603.5;ENST00000594087.1	0.444	0.314	0.619	0.169(1619)	0.115(81)	0.009(157)	non tumor-specific	nAS	yes
KCNMA1_LS058	chr10:77086593|77090400:-	KCNMA1	potassium calcium-activated channel subfamily M alpha 1	protein coding gene	no	ENST00000604624.6;ENST00000639601.1;ENST00000638991.1;ENST00000639913.1;ENST00000639205.1;ENST00000639486.1;ENST00000639498.1;ENST00000640523.1;ENST00000372443.6;ENST00000638223.1;ENST00000639344.1;ENST00000638848.1;ENST00000639090.1;ENST00000639489.1;ENST00000639069.1;ENST00000372408.7;ENST00000639995.1;ENST00000639483.1;ENST00000639691.1;ENST00000372421.10;ENST00000640570.1;ENST00000372437.6;ENST00000638895.1;ENST00000457953.6;ENST00000404771.8;ENST00000638351.1;ENST00000372440.6;ENST00000638306.1;ENST00000640182.1;ENST00000638606.1;ENST00000639591.1;ENST00000640605.1;ENST00000638203.1;ENST00000639968.1;ENST00000372403.9;ENST00000640626.1;ENST00000639851.1;ENST00000640934.1;ENST00000640029.1;ENST00000404857.6;ENST00000640093.1;ENST00000638252.1;ENST00000639544.1;ENST00000640807.1;ENST00000434208.6;ENST00000286627.10;ENST00000286628.13;ENST00000406533.7;ENST00000354353.9;ENST00000638283.1;ENST00000639730.1;ENST00000639370.1;ENST00000640141.1;ENST00000638632.1;ENST00000640969.1;ENST00000638751.1;ENST00000639406.1;ENST00000639823.1;ENST00000640834.1;ENST00000626620.3;ENST00000638759.1;ENST00000638575.1;ENST00000638999.1;ENST00000638514.1;ENST00000640773.1;ENST00000637862.2;ENST00000640386.1;ENST00000640632.1;ENST00000638506.1;ENST00000639120.1;ENST00000638531.1	9.233	15.983	6.947	0.544(5212)	0.829(582)	0.891(15479)	non tumor-specific	nAS	yes
UN_FADS2_LS0218	chr11:61866916|61866939:+	FADS2	fatty acid desaturase 2	protein coding gene	no	.	89.084	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RFC3_LS006	chr13:33830855|33831256:+	RFC3	replication factor C subunit 3	protein coding gene	yes	ENST00000380071.7;ENST00000434425.5;ENST00000616236.1	31.686	10.194	8.720	0.977(9357)	0.986(692)	0.966(16783)	non tumor-specific	nAS	yes
ARHGEF1_LS027	chr19:41897326|41898442:+	ARHGEF1	Rho guanine nucleotide exchange factor 1	protein coding gene	yes	.;.	2.297	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_THAP12_LS0001	chr11:76350250|76350298:+	THAP12	THAP domain containing 12	protein coding gene	no	.	3.137	0.385	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00592_LS0016	chr12:52205874|52223446:+	LINC00592	long intergenic non-protein coding RNA 592	lncRNA gene	no	.	1.156	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HMGCR_LS011	chr5:75347309|75350042:+	HMGCR	3-hydroxy-3-methylglutaryl-CoA reductase	protein coding gene	no	ENST00000511206.5;ENST00000287936.8;ENST00000343975.9	25.633	23.297	8.949	0.937(8973)	0.981(689)	0.963(16742)	non tumor-specific	nAS	yes
UN_ZNF354A_LS0007	chr5:178727328|178728990:-	ZNF354A	zinc finger protein 354A	protein coding gene	no	.	1.424	0.210	0.000	0.034(322)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
RAMP2-AS1_LS003	chr17:42759022|42759739:-	RAMP2-AS1	RAMP2 antisense RNA 1	lncRNA gene	no	ENST00000592195.1	1.148	0.545	1.759	0.225(2153)	0.412(289)	0.618(10737)	non tumor-specific	nAS	yes
SIDT2_LS015	chr11:117186223|117186584:+	SIDT2	SID1 transmembrane family member 2	protein coding gene	no	ENST00000324225.8;ENST00000620360.4;ENST00000278951.11;ENST00000628876.2;ENST00000431081.6;ENST00000529441.5	22.744	26.832	32.823	0.961(9204)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip	yes
ETV5_LS001	chr3:186048860|186052030:-	ETV5	ETS variant transcription factor 5	protein coding gene	no	ENST00000306376.9;ENST00000434744.5;ENST00000480706.1;ENST00000433149.1	27.487	15.067	7.963	0.902(8638)	0.94(660)	0.936(16268)	non tumor-specific	alt_3prime;exon_skip	yes
SOX6_LS020	chr11:16186955|16234582:-	SOX6	SRY-box transcription factor 6	protein coding gene	no	ENST00000316399.10;ENST00000396356.7;ENST00000528252.5;ENST00000527619.5;ENST00000528429.5;ENST00000531297.1	3.734	2.151	1.385	0.309(2957)	0.406(285)	0.583(10139)	non tumor-specific	exon_skip	yes
NAV2_LS047	chr11:20083179|20090865:+	NAV2	neuron navigator 2	protein coding gene	no	ENST00000360655.8;ENST00000396085.5;ENST00000540292.5;ENST00000527559.6;ENST00000349880.8;ENST00000396087.7;ENST00000533917.5	16.353	14.506	13.249	0.846(8106)	0.947(665)	0.934(16229)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPIL2_LS0033	chr22:21695496|21695867:+	PPIL2	peptidylprolyl isomerase like 2	protein coding gene	no	.	8.181	4.921	0.000	0.369(3535)	0.402(282)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
THRB-AS1_LS002	chr3:24494491|24499532:+	THRB-AS1	THRB antisense RNA 1	lncRNA gene	no	ENST00000432368.2;ENST00000629562.2;ENST00000627154.2	0.306	0.304	1.036	0.309(2961)	0.624(438)	0.474(8247)	non tumor-specific	nAS	yes
NAA60_LS012	chr16:3447620|3448471:+	NAA60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein coding gene	no	ENST00000572757.5;ENST00000575733.5;ENST00000649205.1;ENST00000573201.6	0.176	0.096	1.765	0.714(6842)	0.732(514)	0.726(12620)	non tumor-specific	exon_skip	yes
HSPG2_LS086	chr1:21875747|21875863:-	HSPG2	heparan sulfate proteoglycan 2	protein coding gene	no	ENST00000374695.7	19.457	16.603	25.696	0.79(7566)	0.917(644)	0.884(15358)	non tumor-specific	exon_skip	yes
ARID1B_LS017	chr6:157084905|157133028:+	ARID1B	AT-rich interaction domain 1B	protein coding gene	no	ENST00000414678.7	0.213	0.281	0.773	0.661(6332)	0.786(552)	0.349(6069)	non tumor-specific	exon_skip	yes
GRIP1_LS002	chr12:66349246|66515619:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000540854.5	0.096	0.034	0.727	0.097(931)	0.142(100)	0(7)	non tumor-specific	nAS	yes
UN_SLC22A18AS_UP_LS0003	chr11:2929382|2929570:-	SLC22A18AS	solute carrier family 22 member 18 antisense	protein coding gene	no	.	1.041	0.151	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01122_LS018	chr2:59019691|59022956:+	LINC01122	long intergenic non-protein coding RNA 1122	lncRNA gene	no	ENST00000452840.5;ENST00000650056.1;ENST00000427421.5	5.352	0.515	2.258	0.011(106)	0.004(3)	0.155(2702)	non tumor-specific	nAS	yes
CLCA1_LS008	chr1:86489170|86491265:+	CLCA1	chloride channel accessory 1	protein coding gene	no	ENST00000234701.7;ENST00000394711.1	14.234	173.924	0.989	0.072(691)	0.098(69)	0.116(2012)	non tumor-specific	nAS	yes
UN_AL589935.1_LS0022	chr6:71288586|71291871:+	AL589935.1	-	lncRNA gene	no	.	0.760	0.123	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_WIZ_LS0079	chr19:15448367|15449167:-	WIZ	WIZ zinc finger	protein coding gene	no	.	1.039	0.196	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
FAM184A_LS031	chr6:119024813|119078141:-	FAM184A	family with sequence similarity 184 member A	protein coding gene	no	ENST00000621231.4;ENST00000338891.11;ENST00000521531.5	1.086	1.283	2.445	0.381(3654)	0.695(488)	0.714(12409)	non tumor-specific	exon_skip	yes
TCP10_LS003	chr6:167373360|167374351:-	TCP10	t-complex 10 like 3, pseudogene	protein coding gene	no	ENST00000397829.8;ENST00000617120.4;ENST00000648018.1;ENST00000514083.1	0.147	0.005	0.714	0.005(47)	0.001(1)	0.001(17)	non tumor-specific	nAS	yes
CCDC28A_LS001	chr6:138773902|138776079:+	CCDC28A	coiled-coil domain containing 28A	protein coding gene	yes	ENST00000611852.4;ENST00000332797.10;ENST00000617445.4	27.660	28.453	30.622	0.988(9462)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_TMPRSS4_LS0034	chr11:118113435|118113923:+	TMPRSS4	transmembrane serine protease 4	protein coding gene	no	.	2.375	1.424	0.000	0.019(180)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PGS1_LS021	chr17:78404089|78414952:+	PGS1	phosphatidylglycerophosphate synthase 1	protein coding gene	no	ENST00000589426.5;ENST00000585521.2;ENST00000586355.1	4.006	2.147	14.521	0.979(9382)	0.966(678)	0.978(17004)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
ZG16B_LS003	chr16:2830796|2831796:+	ZG16B	zymogen granule protein 16B	protein coding gene	no	ENST00000382280.7;ENST00000573019.1;ENST00000572863.1	21.937	26.959	5.175	0.696(6665)	0.734(515)	0.663(11530)	non tumor-specific	alt_3prime	yes
UN_SPRED2_LS0017	chr2:65334773|65338841:-	SPRED2	sprouty related EVH1 domain containing 2	protein coding gene	no	.	3.031	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
PPP2R3C_LS005	chr14:35091207|35095048:-	PPP2R3C	protein phosphatase 2 regulatory subunit B''gamma	protein coding gene	no	ENST00000261475.9;ENST00000554222.5;ENST00000557217.5	58.033	35.220	46.652	0.992(9506)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_BCAM_LS0044	chr19:44812370|44813258:-	BCAM	branched chain amino acid transaminase 2	protein coding gene	no	.	3.444	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AF233439.1_LS001	chr8:6929461|6930340:+	AF233439.1	-	lncRNA gene	no	ENST00000526235.1	1.352	0.000	0.797	0(1)	0(0)	0(4)	non tumor-specific	nAS	yes
NOL11_LS027	chr17:67743586|67743925:+	NOL11	nucleolar protein 11	protein coding gene	no	ENST00000583021.1	0.174	0.097	0.783	0.795(7613)	0.776(545)	0.357(6209)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AC011452.1_LS0080	chr19:49933524|49933546:-	AC011452.1	-	protein coding gene	no	.	45.060	14.519	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CTNNA1_LS0026	chr5:138824635|138824668:-	CTNNA1	catenin alpha 1	protein coding gene	no	.	6.820	0.383	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WNK2_UP_LS0004	chr9:93133593|93147683:+	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	.	0.670	1.589	0.000	0.004(43)	0.033(23)	0(0)	non tumor-specific	nAS	no
HADHB_LS021	chr2:26279315|26279994:+	HADHB	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein coding gene	no	ENST00000537713.5;ENST00000317799.9;ENST00000494615.1;ENST00000545822.2	304.998	288.846	178.009	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
EGF_LS031	chr4:110004622|110011202:+	EGF	epidermal growth factor	protein coding gene	no	ENST00000509996.1;ENST00000544918.1;ENST00000540840.1	0.420	0.926	1.546	0.368(3526)	0.499(350)	0.378(6578)	non tumor-specific	exon_skip	yes
UN_AC061992.1_LS0014	chr17:78367266|78369672:+	AC061992.1	-	lncRNA gene	no	.	1.189	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC062020.1_UP_LS0113	chr2:122540425|122651138:+	AC062020.1	-	lncRNA gene	no	.	1.908	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GSR_LS0041	chr8:30712088|30723687:-	GSR	glutathione-disulfide reductase	protein coding gene	no	.	1.406	1.282	0.000	0.003(30)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ANXA2_LS0038	chr15:60349191|60351193:-	ANXA2	annexin A2	protein coding gene	no	.	268.933	66.009	0.000	0.007(64)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
C17orf78_LS003	chr17:37379382|37386009:+	C17orf78	chromosome 17 open reading frame 78	protein coding gene	no	ENST00000615133.1	3.512	15.116	3.763	0.012(113)	0.017(12)	0.01(167)	non tumor-specific	exon_skip	yes
NR1D1_LS001	chr17:40093282|40093912:-	NR1D1	nuclear receptor subfamily 1 group D member 1	protein coding gene	no	ENST00000246672.3	60.494	27.839	116.175	0.917(8790)	0.946(664)	0.979(17011)	non tumor-specific	nAS	yes
UN_MIR1295A_UP_LS0017	chr1:171196938|171213798:-	MIR1295A	microRNA 1295a	small non-coding RNA gene	no	.	2.129	0.246	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
MUC16_LS081	chr19:8915639|8916540:-	MUC16	mucin 16, cell surface associated	protein coding gene	no	ENST00000397910.8	5.779	2.318	1.457	0.105(1003)	0.107(75)	0.099(1726)	non tumor-specific	nAS	yes
UN_BANF1_LS0014	chr11:66002835|66003235:+	BANF1	BAF nuclear assembly factor 1	protein coding gene	no	.	18.696	3.026	0.000	0.062(595)	0.058(41)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_C10orf55_LS0019	chr10:73915011|73915251:+	C10orf55	chromosome 10 open reading frame 55 (putative)	protein coding gene	no	.	182.951	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ESRRAP2_LS004	chr13:21278102|21280269:+	ESRRAP2	estrogen-related receptor alpha pseudogene 2	pseudogene	no	ENST00000427890.3	0.822	0.000	0.747	0.004(41)	0(0)	0.003(47)	non tumor-specific	nAS	yes
UN_LSS_LS0049	chr21:46192648|46193000:+	LSS	lanosterol synthase	protein coding gene	no	.	19.628	0.493	0.000	0.008(76)	0.001(1)	0(0)	non tumor-specific	nAS	no
STUB1_LS003	chr16:680684|681209:+	STUB1	STIP1 homology and U-box containing protein 1	protein coding gene	yes	ENST00000567173.5;ENST00000567790.1	2.282	1.711	2.698	0.811(7766)	0.823(578)	0.913(15865)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CSNK1A1_LS0043	chr5:149531511|149550075:-	CSNK1A1	casein kinase 1 alpha 1	protein coding gene	yes	.	2.598	1.137	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_DOCK10_LS0015	chr2:224795089|224796316:-	DOCK10	dedicator of cytokinesis 10	protein coding gene	no	.	4.160	0.614	0.000	0.01(100)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_AC246787.2_UP_LS1084	chr14:105741633|105769398:+	AC246787.2	-	lncRNA gene	no	.	166.729	50.645	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_YLPM1_LS0047	chr14:74781715|74781851:-	YLPM1	YLP motif containing 1	protein coding gene	no	.	1.472	0.102	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC02242_LS002	chr5:67634395|67646606:-	LINC02242	long intergenic non-protein coding RNA 2242	lncRNA gene	no	ENST00000507298.1	1.049	0.369	0.986	0.003(26)	0.011(8)	0.184(3193)	non tumor-specific	nAS	yes
UN_PDS5B_LS0029	chr13:32673356|32674610:+	PDS5B	PDS5 cohesin associated factor B	protein coding gene	yes	.	2.509	0.068	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_SULF2_LS0015	chr20:47665956|47666088:-	SULF2	sulfatase 2	protein coding gene	no	.	8.729	3.226	0.000	0.015(141)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
STXBP3_LS021	chr1:108807549|108808783:+	STXBP3	syntaxin binding protein 3	protein coding gene	no	ENST00000370008.3;ENST00000370008.3	70.782	46.964	70.997	0.986(9449)	0.991(696)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
DPY19L2P2_LS017	chr7:103234726|103237756:-	DPY19L2P2	DPY19L2 pseudogene 2	pseudogene	no	ENST00000439473.5;ENST00000438364.5;ENST00000411491.5;ENST00000312132.8;ENST00000435536.5	2.402	0.712	0.954	0.1(956)	0.051(36)	0.276(4799)	non tumor-specific	nAS	yes
UN_TPCN2_LS0062	chr11:69084854|69085210:+	TPCN2	two pore segment channel 2	protein coding gene	no	.	1.257	0.403	0.000	0.01(97)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
TMEM190_LS004	chr19:55377886|55377975:+	TMEM190	transmembrane protein 190	protein coding gene	no	ENST00000291934.3	3.337	3.837	1.245	0.192(1835)	0.211(148)	0.316(5500)	non tumor-specific	nAS	yes
UN_EXOC6_LS0064	chr10:93057036|93058198:+	EXOC6	exocyst complex component 6	protein coding gene	no	.	5.241	1.456	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
SHOX_LS004	chrX:640878|640999:+	SHOX	short stature homeobox	protein coding gene	no	ENST00000381578.6;ENST00000334060.8;ENST00000381575.6	16.550	0.377	1.298	0.011(107)	0.013(9)	0.189(3292)	non tumor-specific	nAS	yes
FAM69C_LS002	chr18:74442116|74446606:-	FAM69C	divergent protein kinase domain 1C	protein coding gene	no	ENST00000343998.7	9.242	2.588	3.016	0.231(2211)	0.145(102)	0.51(8861)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNU6-876P_UP_LS0005	chr11:129237248|129283026:-	RNU6-876P	RNA, U6 small nuclear 876, pseudogene	small non-coding RNA gene	no	.	0.614	0.134	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL603766.1_UP_LS0004	chr6:149169038|149169619:-	AL603766.1	-	pseudogene	no	.	3.386	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AVL9_LS0015	chr7:32515649|32543141:+	AVL9	AVL9 cell migration associated	protein coding gene	no	.	2.159	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PKDCC_LS0022	chr2:42055020|42055289:+	PKDCC	protein kinase domain containing, cytoplasmic	protein coding gene	no	.	24.090	8.753	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_ADAMTS10_LS0012	chr19:8595907|8596073:-	ADAMTS10	ADAM metallopeptidase with thrombospondin type 1 motif 10	protein coding gene	no	.	1.992	0.250	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_DCLK2_LS0007	chr4:150203889|150214665:+	DCLK2	doublecortin like kinase 2	protein coding gene	no	.	0.973	0.081	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CD6_LS006	chr11:61004610|61006574:+	CD6	CD6 molecule	protein coding gene	no	ENST00000538288.1	0.221	0.064	0.704	0.071(680)	0.064(45)	0.003(59)	non tumor-specific	nAS	yes
UN_ERCC1_LS0045	chr19:45423381|45423615:-	ERCC1	ERCC excision repair 1, endonuclease non-catalytic subunit	protein coding gene	no	.	3.310	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
ZFYVE26_LS009	chr14:67756145|67761366:-	ZFYVE26	zinc finger FYVE-type containing 26	protein coding gene	no	ENST00000394455.6;ENST00000347230.8;ENST00000554557.5;ENST00000554523.5;ENST00000557306.1	15.671	8.574	14.946	0.971(9299)	0.976(685)	0.978(16995)	non tumor-specific	exon_skip	yes
EEF2KMT_LS022	chr16:5095514|5097644:-	EEF2KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein coding gene	no	ENST00000458008.8;ENST00000427587.8;ENST00000585436.5;ENST00000587133.1;ENST00000587200.1;ENST00000585975.5;ENST00000458008.8;ENST00000427587.8;ENST00000585436.5;ENST00000587133.1;ENST00000587200.1;ENST00000585975.5	7.912	4.017	5.055	0.957(9171)	0.973(683)	0.952(16546)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AP005230.1_LS0030	chr18:2035147|2057230:-	AP005230.1	-	lncRNA gene	no	.	1.162	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
MAP3K6_LS030	chr1:27364085|27364204:-	MAP3K6	mitogen-activated protein kinase kinase kinase 6	protein coding gene	no	ENST00000374040.7;ENST00000493901.5;ENST00000357582.2	15.846	11.893	43.552	0.912(8736)	0.939(659)	0.968(16832)	non tumor-specific	alt_3prime	yes
NINL_LS015	chr20:25479206|25480161:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5	9.594	7.299	6.645	0.826(7915)	0.889(624)	0.915(15904)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PLEKHG4_LS0022	chr16:67288578|67288803:+	PLEKHG4	pleckstrin homology and RhoGEF domain containing G4	protein coding gene	no	.	5.600	0.351	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AL645728.1_UP_LS0125	chr1:1480878|1517370:+	AL645728.1	-	lncRNA gene	no	.	18.009	1.903	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	nAS	no
HYI_LS004	chr1:43451311|43451428:-	HYI	hydroxypyruvate isomerase (putative)	protein coding gene	no	ENST00000583037.5;ENST00000372433.5;ENST00000487366.5;ENST00000372432.5;ENST00000372427.5;ENST00000583037.5;ENST00000372433.5;ENST00000487366.5;ENST00000372432.5;ENST00000372427.5	28.739	23.349	59.984	0.976(9355)	0.981(689)	0.978(17006)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PPEF1_LS022	chrX:18818145|18825751:+	PPEF1	protein phosphatase with EF-hand domain 1	protein coding gene	no	ENST00000470157.1	0.359	0.089	0.897	0.08(768)	0.021(15)	0.064(1109)	non tumor-specific	exon_skip	yes
UN_FP236383.2_UP_LS0445	chr21:8401687|8445930:-	FP236383.2	-	lncRNA gene	no	.	371.919	28.614	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC023855.1_LS001	chr17:44115995|44119987:+	AC023855.1	-	lncRNA gene	no	ENST00000585899.1	0.315	0.006	0.633	0.002(18)	0.001(1)	0.008(141)	non tumor-specific	nAS	yes
RCE1_LS009	chr11:66845237|66845500:+	RCE1	symbol withdrawn, see [HGNC:13721](/data/gene-symbol-report/#!/hgnc_id/HGNC:13721)	protein coding gene	no	ENST00000309657.7;ENST00000524849.5;ENST00000525356.1	64.621	29.311	31.280	0.995(9534)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PLA2R1_LS027	chr2:159979914|159983928:-	PLA2R1	phospholipase A2 receptor 1	protein coding gene	yes	ENST00000283243.12;ENST00000392771.1	5.920	15.959	7.165	0.575(5505)	0.816(573)	0.836(14534)	non tumor-specific	nAS	yes
UN_MALT1_LS0010	chr18:58681336|58684467:+	MALT1	MALT1 paracaspase	protein coding gene	yes	.	3.310	0.132	0.000	0.025(236)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
CCNL1_LS006	chr3:157149596|157149836:-	CCNL1	minichromosome maintenance complex component 2	protein coding gene	yes	ENST00000461804.5;ENST00000295926.7;ENST00000464316.5;ENST00000471247.5;ENST00000474539.5;ENST00000475298.5;ENST00000631619.1;ENST00000470121.5;ENST00000476367.5;ENST00000477127.5;ENST00000464679.5	63.292	38.153	212.756	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;intron_retention	yes
FAM149A_LS025	chr4:186167096|186167181:+	FAM149A	family with sequence similarity 149 member A	protein coding gene	no	ENST00000503432.5;ENST00000356371.9;ENST00000515078.5;ENST00000227065.8;ENST00000502970.5;ENST00000514153.5;ENST00000389354.6;ENST00000510843.5	16.044	20.503	15.025	0.806(7727)	0.989(694)	0.934(16229)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AGTPBP1_LS0019	chr9:85621805|85632662:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	.	6.631	0.826	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
RTN4IP1_LS010	chr6:106622969|106628748:-	RTN4IP1	reticulon 4 interacting protein 1	protein coding gene	yes	ENST00000369063.7;ENST00000539449.2	12.879	9.834	6.937	0.951(9109)	0.972(682)	0.964(16749)	non tumor-specific	alt_3prime	yes
UN_SOX9_LS0071	chr17:72124203|72124252:-	SOX9	SRY-box transcription factor 9	protein coding gene	no	.	1.478	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC114977.2_UP_LS0001	chr5:40653149|40832469:-	AC114977.2	-	lncRNA gene	no	.	9.835	6.287	0.000	0.009(83)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SYCP2_LS0022	chr20:59901810|59911750:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	.	0.700	0.110	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ARL6IP6_LS0004	chr2:152718119|152720533:+	ARL6IP6	ADP ribosylation factor like GTPase 6 interacting protein 6	protein coding gene	no	.	0.965	0.419	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
DIP2B_LS034	chr12:50731537|50732366:+	DIP2B	disco interacting protein 2 homolog B	protein coding gene	no	ENST00000301180.9;ENST00000546732.1	16.567	10.767	8.823	0.939(8997)	0.97(681)	0.974(16925)	non tumor-specific	exon_skip	yes
UN_ARHGAP35_UP_LS0005	chr19:46861209|46918488:+	ARHGAP35	Rho GTPase activating protein 35	protein coding gene	no	.	10.740	4.707	0.000	0.103(990)	0.148(104)	0(0)	non tumor-specific	nAS	no
TRIM4_LS008	chr7:99909660|99916702:-	TRIM4	tripartite motif containing 4	protein coding gene	no	ENST00000355947.6	0.149	0.718	0.766	0.325(3115)	0.355(249)	0.23(4006)	non tumor-specific	exon_skip	yes
UN_ASAP2_LS0003	chr2:9207263|9279317:+	ASAP2	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	0.462	0.312	0.000	0.012(111)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RXFP1_LS035	chr4:158648717|158651757:+	RXFP1	relaxin family peptide receptor 1	protein coding gene	no	ENST00000460056.6;ENST00000613319.4;ENST00000423548.5;ENST00000448688.6;ENST00000307765.9;ENST00000342048.9;ENST00000343542.9;ENST00000470033.2	4.820	3.416	2.088	0.175(1678)	0.4(281)	0.326(5667)	non tumor-specific	alt_5prime;exon_skip	yes
GUCY1B1_LS020	chr4:155800074|155802441:+	GUCY1B1	guanylate cyclase 1 soluble subunit beta 1	protein coding gene	no	ENST00000503520.5	0.678	0.901	1.297	0.485(4645)	0.617(433)	0.54(9388)	non tumor-specific	alt_3prime	yes
UN_TBC1D2_LS0009	chr9:98201664|98201740:-	TBC1D2	TBC1 domain family member 2	protein coding gene	no	.	4.158	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
ZMAT4_LS006	chr8:40767730|40786689:-	ZMAT4	zinc finger matrin-type 4	protein coding gene	no	ENST00000518242.5;ENST00000523188.5;ENST00000522623.1	0.396	0.078	0.890	0.062(590)	0.094(66)	0.051(889)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF521_LS003	chr18:25092081|25195160:-	ZNF521	zinc finger protein 521	protein coding gene	no	ENST00000361524.7;ENST00000584787.5;ENST00000399425.6;ENST00000538137.6	15.057	9.351	15.027	0.702(6725)	0.869(610)	0.928(16130)	non tumor-specific	exon_skip	yes
YEATS2_LS018	chr3:183758965|183761507:+	YEATS2	YEATS domain containing 2	protein coding gene	no	ENST00000305135.9	18.404	6.894	9.453	0.87(8333)	0.902(633)	0.967(16805)	non tumor-specific	alt_3prime;exon_skip	yes
GALNT11_LS023	chr7:152117375|152118678:+	GALNT11	polypeptide N-acetylgalactosaminyltransferase 11	protein coding gene	no	ENST00000430044.6;ENST00000434507.5;ENST00000431940.1	70.646	55.601	37.070	0.993(9518)	0.997(700)	0.978(17006)	non tumor-specific	intron_retention	yes
UN_PALM_LS0080	chr19:748054|748106:-	PALM	paralemmin	protein coding gene	no	.	2.415	0.385	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMPD4_LS026	chr2:130157396|130161186:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000454468.5;ENST00000439886.5;ENST00000409031.5;ENST00000439029.5;ENST00000454468.5;ENST00000439886.5;ENST00000409031.5;ENST00000439029.5;ENST00000454468.5;ENST00000439886.5;ENST00000409031.5;ENST00000439029.5	26.361	16.570	15.806	0.974(9331)	0.989(694)	0.965(16776)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATP13A1_LS021	chr19:19654700|19655119:-	ATP13A1	ATPase 13A1	protein coding gene	no	ENST00000291503.9;ENST00000497556.5;ENST00000473243.5;ENST00000357324.10;ENST00000497156.5;ENST00000496082.5;ENST00000497762.1	78.920	35.901	45.971	0.992(9503)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
TMC1_LS023	chr9:72792065|72792191:+	TMC1	transmembrane channel like 1	protein coding gene	no	ENST00000297784.9;ENST00000645208.1;ENST00000645053.1;ENST00000645773.1;ENST00000340019.4;ENST00000644967.1;ENST00000645787.1;ENST00000646619.1;ENST00000486417.5	2.489	0.452	0.870	0.017(163)	0.046(32)	0.149(2594)	non tumor-specific	nAS	yes
GMDS-DT_LS023	chr6:2452560|2453964:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	ENST00000606884.1	0.018	0.051	1.003	0.008(79)	0.014(10)	0.072(1253)	non tumor-specific	nAS	yes
UN_ID1_LS0007	chr20:31605552|31605577:-	ID1	inhibitor of DNA binding 1, HLH protein	protein coding gene	yes	.	1.802	0.161	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCGF5_LS011	chr10:91261424|91264431:+	PCGF5	polycomb group ring finger 5	protein coding gene	no	ENST00000614189.4;ENST00000543648.5;ENST00000336126.5	16.525	18.493	13.300	0.935(8957)	0.99(695)	0.975(16952)	non tumor-specific	exon_skip	yes
CTNS_LS019	chr17:3656795|3658005:+	CTNS	cystinosin, lysosomal cystine transporter	protein coding gene	no	ENST00000046640.7;ENST00000381870.7	25.401	16.885	12.086	0.972(9309)	0.991(696)	0.977(16984)	non tumor-specific	alt_5prime;intron_retention	yes
UN_SLC9A3_LS0183	chr5:491584|491769:-	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	.	3.565	14.828	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC013470.2_LS0003	chr7:12474261|12474748:-	AC013470.2	-	protein coding gene	no	.	3.273	0.123	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TRPM2_LS0036	chr21:44410935|44410977:-	TRPM2	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	.	7.453	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KANSL3_LS0045	chr2:96637185|96637421:-	KANSL3	KAT8 regulatory NSL complex subunit 3	protein coding gene	no	.	1.032	0.307	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
GREB1_LS019	chr2:11588931|11592776:+	GREB1	growth regulating estrogen receptor binding 1	protein coding gene	no	ENST00000381486.6;ENST00000234142.9;ENST00000432985.1	3.228	1.922	1.318	0.267(2560)	0.321(225)	0.437(7600)	non tumor-specific	exon_skip	yes
UN_AL121827.1_UP_LS0001	chr20:63339375|63339404:+	AL121827.1	-	lncRNA gene	no	.	5.761	0.183	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SFPQ_LS0026	chr1:35185451|35187001:-	SFPQ	splicing factor proline and glutamine rich	protein coding gene	yes	.	4.482	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
AC131211.1_LS001	chr3:161817179|161821697:-	AC131211.1	-	lncRNA gene	no	ENST00000497285.1	0.458	0.000	0.948	0.004(39)	0(0)	0.003(58)	non tumor-specific	nAS	yes
NEB_LS035	chr2:151497718|151498260:-	NEB	nebulin	protein coding gene	no	ENST00000397337.6;ENST00000427231.6;ENST00000618972.4;ENST00000397345.7;ENST00000604864.5;ENST00000603639.5;ENST00000421461.6	2.836	4.481	1.241	0.082(784)	0.084(59)	0.537(9329)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_GPR75-ASB3_LS0043	chr2:53765585|53786817:-	GPR75-ASB3	GPR75-ASB3 readthrough	protein coding gene	no	.	2.401	0.901	0.000	0.117(1125)	0.105(74)	0(0)	non tumor-specific	nAS	no
UN_AC233280.2_UP_LS0001	chr3:195652255|195657305:-	AC233280.2	-	pseudogene	no	.	1.599	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STIM2_LS0011	chr4:26860704|26919504:+	STIM2	stromal interaction molecule 2	protein coding gene	no	.	1.188	0.126	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
LRRC28_LS017	chr15:99287951|99317464:+	LRRC28	leucine rich repeat containing 28	protein coding gene	no	ENST00000559399.5	0.075	0.027	1.050	0.449(4306)	0.574(403)	0.571(9926)	non tumor-specific	exon_skip;mutex_exons	yes
ITGA11_LS008	chr15:68311080|68311290:-	ITGA11	integrin subunit alpha 11	protein coding gene	no	ENST00000315757.8;ENST00000315757.8	10.555	4.536	5.883	0.634(6072)	0.644(452)	0.86(14956)	non tumor-specific	alt_3prime;alt_5prime	yes
ATP5PF_LS005	chr21:25729801|25734333:-	ATP5PF	ATP synthase peripheral stalk subunit F6	protein coding gene	no	ENST00000400094.5	11.677	8.513	11.055	0.975(9345)	0.981(689)	0.973(16916)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_CCL16_LS0001	chr17:35978260|35981345:-	CCL16	C-C motif chemokine ligand 16	protein coding gene	no	.	16.116	10.456	0.000	0.008(76)	0.023(16)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_KCNG2_LS0009	chr18:79893768|79894276:+	KCNG2	potassium voltage-gated channel modifier subfamily G member 2	protein coding gene	no	.	2.868	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR82_LS004	chr3:52259872|52260385:-	WDR82	WD repeat domain 82 pseudogene 1	protein coding gene	no	ENST00000296490.7;ENST00000487402.1;ENST00000469000.5	103.349	79.989	58.647	0.99(9481)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
CSF2_LS002	chr5:132074122|132074810:+	CSF2	colony stimulating factor 2	protein coding gene	yes	ENST00000296871.3	2.886	1.845	0.817	0.303(2905)	0.178(125)	0.081(1401)	non tumor-specific	nAS	yes
UN_TM4SF1-AS1_LS0001	chr3:149378315|149385072:+	TM4SF1-AS1	TM4SF1 antisense RNA 1	lncRNA gene	no	.	2.631	0.320	0.000	0.016(156)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_CCDC126_LS0006	chr7:23604147|23611171:+	CCDC126	coiled-coil domain containing 126	protein coding gene	no	.	1.729	0.324	0.000	0.015(142)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MLLT10_LS0007	chr10:21534531|21534645:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	.	1.191	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
HECW2_LS014	chr2:196271289|196274021:-	HECW2	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000260983.8;ENST00000647236.1;ENST00000644030.1;ENST00000644421.1;ENST00000644256.1;ENST00000644978.1;ENST00000462290.1;ENST00000647402.1	2.702	3.159	3.308	0.64(6133)	0.756(531)	0.828(14398)	non tumor-specific	nAS	yes
UN_CD63_LS0015	chr12:55725626|55725819:-	CD63	CD63 molecule	protein coding gene	no	.	660.597	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_ASAP2_LS0044	chr2:9388546|9389725:+	ASAP2	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	2.260	0.444	0.000	0.021(197)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL589994.2_UP_LS0011	chr6:48319711|48332299:+	AL589994.2	-	pseudogene	no	.	2.415	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ZBED3-AS1_LS029	chr5:77118521|77134305:+	ZBED3-AS1	ZBED3 antisense RNA 1	lncRNA gene	no	ENST00000514905.5	0.391	0.000	0.745	0.018(168)	0.027(19)	0.041(708)	non tumor-specific	nAS	yes
BTNL10_LS001	chr1:228510678|228511651:-	BTNL10	butyrophilin like 10	pseudogene	no	ENST00000595971.3;ENST00000640831.1	1.947	0.000	1.252	0.001(8)	0(0)	0.036(630)	non tumor-specific	nAS	yes
WASHC4_LS002	chr12:105107861|105111125:+	WASHC4	WASH complex subunit 4	protein coding gene	no	ENST00000311317.8;ENST00000332180.9;ENST00000550053.5;ENST00000620430.5	5.357	3.732	6.790	0.834(7995)	0.944(663)	0.941(16365)	non tumor-specific	alt_5prime;exon_skip	yes
AMZ2_LS009	chr17:68248086|68248644:+	AMZ2	archaelysin family metallopeptidase 2	protein coding gene	no	.;.	3.880	2.027	0.000	0.055(531)	0.054(38)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
KANSL3_LS001	chr2:96595631|96598081:-	KANSL3	KAT8 regulatory NSL complex subunit 3	protein coding gene	no	ENST00000481986.1	0.292	0.382	2.390	0.8(7667)	0.829(582)	0.865(15027)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NUS1P1_UP_LS0002	chrX:47557386|47558490:-	NUS1P1	NUS1 pseudogene 1	pseudogene	no	.	1.167	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RAPGEFL1_LS0032	chr17:40190909|40191698:-	RAPGEFL1	Rap guanine nucleotide exchange factor like 1	protein coding gene	no	.	2.809	0.118	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MFSD12_LS0057	chr19:3541055|3541474:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	9.169	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TBX1_LS013	chr22:19766002|19782913:+	TBX1	T-box transcription factor 1	protein coding gene	no	ENST00000359500.7	0.137	0.000	0.591	0.005(49)	0.001(1)	0.01(177)	non tumor-specific	nAS	yes
GOLGA8A_LS035	chr15:34407735|34435383:-	GOLGA8A	golgin A8 family member A	protein coding gene	no	ENST00000569781.1	4.144	2.398	28.345	0.744(7124)	0.748(525)	0.957(16643)	non tumor-specific	exon_skip	yes
MRPL48_LS024	chr11:73825796|73844807:+	MRPL48	mitochondrial ribosomal protein L48	protein coding gene	no	ENST00000310614.11;ENST00000508278.6;ENST00000540162.5;ENST00000544140.5;ENST00000544819.5;ENST00000411840.6;ENST00000535277.5;ENST00000398483.7;ENST00000537007.5;ENST00000543374.1	46.251	25.942	37.180	0.997(9549)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
FAM133A_LS003	chrX:93674752|93698397:+	FAM133A	family with sequence similarity 133 member A	protein coding gene	no	ENST00000332647.5	2.581	0.397	1.743	0.068(654)	0.011(8)	0.244(4248)	non tumor-specific	exon_skip	yes
PTCH1_LS013	chr9:95467425|95468751:-	PTCH1	patched 1	protein coding gene	yes	ENST00000331920.10;ENST00000418258.5;ENST00000421141.5;ENST00000437951.5;ENST00000375290.6;ENST00000430669.6;ENST00000429896.6;ENST00000375274.6;ENST00000549678.1	7.260	6.936	6.028	0.856(8205)	0.944(663)	0.936(16274)	non tumor-specific	alt_3prime;exon_skip	yes
GRAMD1C_LS018	chr3:113904272|113908958:+	GRAMD1C	GRAM domain containing 1C	protein coding gene	no	ENST00000479212.5;ENST00000358160.8;ENST00000484714.2;ENST00000472026.5;ENST00000462838.5;ENST00000440446.2	5.448	8.147	3.200	0.67(6422)	0.905(635)	0.727(12641)	non tumor-specific	exon_skip	yes
FMO3_LS010	chr1:171107820|171108116:+	FMO3	flavin containing dimethylaniline monoxygenase 3	protein coding gene	no	ENST00000479749.1	13.459	7.236	0.705	0.015(141)	0.038(27)	0.024(413)	non tumor-specific	nAS	yes
GAS6_LS018	chr13:113835635|113838069:-	GAS6	growth arrest specific 6	protein coding gene	no	ENST00000327773.6	216.831	238.436	185.920	0.987(9453)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_PRPF38B_LS0009	chr1:108696337|108697810:+	PRPF38B	pre-mRNA processing factor 38B	protein coding gene	no	.	3.371	1.766	0.000	0.112(1072)	0.174(122)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
VMP1_LS021	chr17:59808876|59811670:+	VMP1	vacuole membrane protein 1	protein coding gene	no	ENST00000262291.8;ENST00000592619.5;ENST00000591877.1	124.785	72.675	37.788	0.991(9494)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
LRIG1_LS022	chr3:66417266|66451559:-	LRIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	yes	ENST00000273261.7;ENST00000383703.3;ENST00000498287.5;ENST00000475366.5	42.464	36.917	22.092	0.885(8475)	0.979(687)	0.958(16647)	non tumor-specific	exon_skip	yes
UN_AC135001.1_UP_LS0002	chr12:14176095|14180281:+	AC135001.1	-	pseudogene	no	.	2.312	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LSM14B_LS0022	chr20:62133475|62134135:+	LSM14B	LSM family member 14B	protein coding gene	no	.	17.258	3.532	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_MT-CO2_LS0043	chrM:7935|7982:-	MT-CO2	mitochondrially encoded cytochrome c oxidase II	protein coding gene	no	.	205.215	50.166	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	nAS	no
KANK1_LS026	chr9:707247|710804:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	ENST00000382293.7	1.508	0.671	2.205	0.691(6619)	0.868(609)	0.732(12716)	non tumor-specific	alt_5prime	yes
ZADH2_LS001	chr18:75195744|75208850:-	ZADH2	zinc binding alcohol dehydrogenase domain containing 2	protein coding gene	no	.;.	2.020	0.155	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CYP2J2_LS002	chr1:59901103|59904366:-	CYP2J2	cytochrome P450 family 2 subfamily J member 2	protein coding gene	no	ENST00000492633.5;ENST00000469406.6;ENST00000468257.2	0.809	0.780	2.813	0.407(3901)	0.353(248)	0.48(8352)	non tumor-specific	exon_skip	yes
AL731567.1_LS001	chr10:45444852|45452844:-	AL731567.1	-	lncRNA gene	no	ENST00000435635.1	1.621	0.013	0.666	0.002(19)	0.001(1)	0.009(158)	non tumor-specific	nAS	yes
UN_PI4KA_LS0038	chr22:20749994|20750934:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	.	1.725	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
MIR646HG_LS005	chr20:60098963|60100171:+	MIR646HG	MIR646 host gene	lncRNA gene	no	ENST00000426753.5;ENST00000439507.5;ENST00000457508.1	0.721	0.000	0.692	0.011(105)	0(0)	0.063(1099)	non tumor-specific	nAS	yes
CLTC_LS002	chr17:59644483|59647398:+	CLTC	clathrin heavy chain	protein coding gene	no	ENST00000393043.5;ENST00000269122.7;ENST00000579456.5	94.173	83.663	31.373	0.954(9142)	0.983(690)	0.976(16968)	non tumor-specific	alt_5prime;exon_skip	yes
ATP6V0D1_LS010	chr16:67443178|67444528:-	ATP6V0D1	ATPase H+ transporting V0 subunit d1	protein coding gene	no	ENST00000602876.5;ENST00000290949.7;ENST00000426604.7;ENST00000540149.5;ENST00000561852.5;ENST00000563064.5;ENST00000564615.5;ENST00000566322.6;ENST00000564191.5;ENST00000568101.5	165.653	132.299	148.444	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC01376_LS013	chr2:19346748|19347988:-	LINC01376	long intergenic non-protein coding RNA 1376	lncRNA gene	no	ENST00000650025.1	1.897	0.366	0.000	0.057(548)	0.051(36)	0(0)	non tumor-specific	nAS	yes
AC140479.5_LS001	chr2:110245793|110261432:+	AC140479.5	-	lncRNA gene	no	ENST00000562613.2	0.487	0.246	0.675	0.353(3384)	0.422(296)	0.003(57)	non tumor-specific	nAS	yes
UGDH_LS004	chr4:39500253|39503875:-	UGDH	UDP-glucose 6-dehydrogenase	protein coding gene	no	ENST00000316423.10;ENST00000501493.6;ENST00000506179.5;ENST00000507089.5;ENST00000316423.10;ENST00000501493.6;ENST00000506179.5;ENST00000507089.5;ENST00000316423.10;ENST00000501493.6;ENST00000506179.5;ENST00000507089.5	73.276	62.292	39.731	0.976(9352)	0.984(691)	0.976(16969)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CSRP1_LS014	chr1:201490344|201496192:-	CSRP1	cysteine and glycine rich protein 1	protein coding gene	no	ENST00000367306.5;ENST00000532313.5;ENST00000340006.6;ENST00000531916.5;ENST00000532460.5;ENST00000533432.5;ENST00000524951.5;ENST00000458271.6;ENST00000527573.5;ENST00000529975.5;ENST00000471596.1	158.807	313.886	451.040	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
NAT10_LS020	chr11:34124400|34127463:+	NAT10	N-acetyltransferase 10	protein coding gene	no	ENST00000257829.7;ENST00000531159.6;ENST00000615292.1	42.372	18.428	17.781	0.982(9405)	0.99(695)	0.977(16982)	non tumor-specific	nAS	yes
AC090857.2_LS001	chr11:21260750|21262538:-	AC090857.2	-	lncRNA gene	no	ENST00000526362.1	0.242	0.043	0.764	0.001(7)	0.001(1)	0.001(26)	non tumor-specific	nAS	yes
KIAA1147_LS005	chr7:141665054|141665187:-	KIAA1147	DENN domain containing 11	protein coding gene	no	ENST00000536163.5;ENST00000482493.1	19.452	16.633	14.201	0.958(9180)	0.989(694)	0.972(16901)	non tumor-specific	alt_5prime	yes
UN_SLC7A5_LS0161	chr16:87841155|87843643:-	SLC7A5	solute carrier family 7 member 5	protein coding gene	no	.	2.498	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
XPA_LS014	chr9:97687261|97693649:-	XPA	XPA, DNA damage recognition and repair factor	protein coding gene	no	ENST00000496104.1;ENST00000496104.1	0.171	0.721	1.134	0.653(6258)	0.776(545)	0.585(10177)	non tumor-specific	alt_5prime;exon_skip	yes
AL031777.3_LS002	chr6:26197266|26198859:-	AL031777.3	-	protein coding gene	no	ENST00000635200.1	2.202	0.405	1.352	0.119(1138)	0.057(40)	0.387(6735)	non tumor-specific	nAS	yes
ROS1_LS039	chr6:117396264|117396915:-	ROS1	ROS proto-oncogene 1, receptor tyrosine kinase	protein coding gene	yes	ENST00000368508.7;ENST00000368507.7	5.613	3.848	1.562	0.104(993)	0.194(136)	0.091(1586)	non tumor-specific	nAS	yes
UN_HECTD4_LS0116	chr12:112375904|112381952:-	HECTD4	HECT domain E3 ubiquitin protein ligase 4	protein coding gene	no	.	3.830	0.797	0.000	0.045(430)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
CARMIL2_LS015	chr16:67647766|67647846:+	CARMIL2	capping protein regulator and myosin 1 linker 2	protein coding gene	no	ENST00000334583.10;ENST00000545661.5;ENST00000602742.1	3.313	3.378	1.646	0.334(3197)	0.229(161)	0.586(10179)	non tumor-specific	nAS	yes
AC008060.3_LS002	chr7:155451322|155456990:-	AC008060.3	-	lncRNA gene	no	ENST00000419225.1	0.938	0.000	2.147	0.023(221)	0(0)	0.031(537)	non tumor-specific	nAS	yes
DDX60L_LS062	chr4:168492885|168536548:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	.;.	2.923	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SHH_LS003	chr7:155800597|155806296:-	SHH	sonic hedgehog signaling molecule	protein coding gene	no	ENST00000435425.1	0.520	0.210	0.739	0.037(350)	0.043(30)	0.001(22)	non tumor-specific	alt_3prime	yes
UN_ANXA5_LS0042	chr4:121674293|121674326:+	ANXA5	annexin A5	protein coding gene	no	.	7.388	0.252	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C1QTNF1-AS1_UP_LS0007	chr17:79482598|79644137:-	C1QTNF1-AS1	C1QTNF1 antisense RNA 1	lncRNA gene	no	.	1.697	6.479	0.000	0.003(32)	0.014(10)	0(0)	non tumor-specific	nAS	no
COX5B_LS007	chr2:97646189|97647067:+	COX5B	cytochrome c oxidase subunit 5B	protein coding gene	no	ENST00000258424.2;ENST00000258424.2;ENST00000258424.2	394.783	217.751	490.408	0.97(9292)	0.987(693)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_USPL1_LS0021	chr13:30637857|30646932:+	USPL1	ubiquitin specific peptidase like 1	protein coding gene	no	.	0.772	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC012213.5_LS0023	chr8:103487681|103498176:-	AC012213.5	-	protein coding gene	no	.	1.355	0.099	0.000	0.012(115)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC087633.2_LS004	chr15:95018869|95021044:+	AC087633.2	-	pseudogene	no	ENST00000618377.1	1.170	0.000	0.633	0(1)	0(0)	0.004(63)	non tumor-specific	nAS	yes
UN_AP000915.1_UP_LS0002	chr18:268624|292594:+	AP000915.1	-	lncRNA gene	no	.	0.830	0.609	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
RBMS3_LS009	chr3:28836487|28865224:+	RBMS3	RNA binding motif single stranded interacting protein 3	protein coding gene	yes	ENST00000636900.1	1.183	0.000	0.830	0.001(7)	0(0)	0.021(367)	non tumor-specific	nAS	yes
KDM6B_LS008	chr17:7845456|7845550:+	KDM6B	lysine demethylase 6B	protein coding gene	no	ENST00000254846.9;ENST00000448097.6;ENST00000570632.1	15.194	11.381	15.658	0.912(8739)	0.976(685)	0.974(16938)	non tumor-specific	exon_skip	yes
UN_TRAM1_LS0002	chr8:70573937|70574056:+	TRAM1	translocation associated membrane protein 1	protein coding gene	no	.	1.962	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LRR1_LS007	chr14:49602468|49607400:+	LRR1	leucine rich repeat protein 1	protein coding gene	no	ENST00000298288.10;ENST00000540712.1	12.688	5.010	3.198	0.956(9156)	0.949(666)	0.886(15405)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
USP13_LS003	chr3:179682003|179690241:+	USP13	ubiquitin specific peptidase 13	protein coding gene	no	ENST00000263966.7;ENST00000482333.5;ENST00000496897.5	5.653	4.064	3.533	0.753(7219)	0.883(620)	0.865(15037)	non tumor-specific	alt_3prime;exon_skip	yes
PAN2_LS005	chr12:56318434|56319088:-	PAN2	retinol dehydrogenase 14	protein coding gene	no	ENST00000425394.6;ENST00000610546.4;ENST00000551359.5;ENST00000440411.7;ENST00000257931.9;ENST00000547226.5;ENST00000548043.5	47.518	23.622	61.690	0.978(9371)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
MBP_LS002	chr18:76980471|76982581:-	MBP	proteoglycan 2, pro eosinophil major basic protein	protein coding gene	no	ENST00000578193.5	0.007	0.000	4.633	0.045(431)	0.004(3)	0.201(3495)	non tumor-specific	exon_skip;intron_retention	yes
CDH24_LS008	chr14:23049738|23049822:-	CDH24	cadherin 24	protein coding gene	no	ENST00000487137.6;ENST00000397359.7;ENST00000485922.2;ENST00000554034.5;ENST00000267383.5	12.149	3.043	10.057	0.948(9086)	0.887(623)	0.946(16435)	non tumor-specific	alt_3prime;intron_retention	yes
UN_MTND4LP18_UP_LS0002	chr11:81175316|81176179:+	MTND4LP18	MT-ND4L pseudogene 18	pseudogene	no	.	1.544	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CABIN1_LS024	chr22:24084785|24085006:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	ENST00000263119.9;ENST00000617531.4;ENST00000405822.6;ENST00000398319.6	28.253	16.949	11.984	0.936(8969)	0.96(674)	0.975(16944)	non tumor-specific	exon_skip	yes
GARNL3_LS030	chr9:127344339|127345403:+	GARNL3	GTPase activating Rap/RanGAP domain like 3	protein coding gene	no	ENST00000435213.6;ENST00000373387.8;ENST00000373386.6;ENST00000460176.6	2.616	3.332	7.685	0.666(6380)	0.853(599)	0.927(16107)	non tumor-specific	nAS	yes
NUP98_LS014	chr11:3699348|3700610:-	NUP98	nucleoporin 98 and 96 precursor	protein coding gene	yes	ENST00000324932.11;ENST00000359171.8;ENST00000650171.1;ENST00000355260.7;ENST00000429801.5;ENST00000483285.1	39.823	23.309	31.281	0.985(9434)	0.994(698)	0.979(17013)	non tumor-specific	exon_skip	yes
AC040963.1_LS003	chr18:59084533|59084696:+	AC040963.1	-	lncRNA gene	no	ENST00000589729.1	1.536	0.000	0.818	0.005(51)	0(0)	0.013(222)	non tumor-specific	nAS	yes
SPG11_LS039	chr15:44598373|44600467:-	SPG11	SPG11 vesicle trafficking associated, spatacsin	protein coding gene	no	.;.	3.934	0.924	0.000	0.006(54)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SLC5A1_LS014	chr22:32102237|32104786:+	SLC5A1	solute carrier family 5 member 1	protein coding gene	no	ENST00000266088.8;ENST00000543737.2	19.167	11.782	6.473	0.457(4381)	0.749(526)	0.458(7968)	non tumor-specific	exon_skip	yes
UN_COL1A2_LS0054	chr7:94416503|94418499:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	.	218.318	46.151	0.000	0.054(518)	0.057(40)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_BMT2_LS0002	chr7:112822373|112895569:-	BMT2	base methyltransferase of 25S rRNA 2 homolog	protein coding gene	no	.	2.054	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
FRG1_LS007	chr4:189952287|189953068:+	FRG1	FSHD region gene 1	protein coding gene	no	ENST00000226798.8;ENST00000533157.5;ENST00000531991.6;ENST00000514482.1	107.080	66.739	56.620	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
ABL2_LS011	chr1:179126672|179131311:-	ABL2	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein coding gene	yes	ENST00000502732.5;ENST00000344730.7;ENST00000512653.5;ENST00000504405.5;ENST00000367623.8;ENST00000507173.5;ENST00000511413.5;ENST00000392043.3;ENST00000509520.5;ENST00000504324.1	4.350	2.079	2.565	0.743(7121)	0.774(543)	0.858(14919)	non tumor-specific	exon_skip	yes
D2HGDH_LS036	chr2:241749929|241750151:+	D2HGDH	D-2-hydroxyglutarate dehydrogenase	protein coding gene	no	ENST00000436747.5	2.911	1.436	12.365	0.741(7100)	0.717(503)	0.954(16582)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CIZ1_LS018	chr9:128170107|128176351:-	CIZ1	CDKN1A interacting zinc finger protein 1	protein coding gene	yes	ENST00000372954.5;ENST00000393608.5;ENST00000357558.9;ENST00000538431.5;ENST00000629610.2;ENST00000277465.8;ENST00000372948.7;ENST00000372938.9;ENST00000634901.1;ENST00000415526.5;ENST00000471839.5	185.519	101.273	115.230	0.993(9517)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_RBPMS_LS0042	chr8:30503231|30504286:+	RBPMS	RNA binding protein, mRNA processing factor	protein coding gene	no	.	1.495	0.067	0.000	0.018(172)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_WASHC4_LS0004	chr12:105122238|105122560:+	WASHC4	WASH complex subunit 4	protein coding gene	no	.	2.462	0.510	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_SERGEF_LS0038	chr11:17988749|17992931:-	SERGEF	secretion regulating guanine nucleotide exchange factor	protein coding gene	no	.	6.706	1.836	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ALG12_LS001	chr22:49903879|49904179:-	ALG12	ALG12 alpha-1,6-mannosyltransferase	protein coding gene	no	ENST00000486602.1	0.671	0.328	1.719	0.807(7729)	0.84(590)	0.791(13744)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
GABRA2_LS009	chr4:46305711|46310173:-	GABRA2	gamma-aminobutyric acid type A receptor subunit alpha2	protein coding gene	no	ENST00000510861.5;ENST00000514090.5;ENST00000381620.8;ENST00000356504.5;ENST00000630416.2;ENST00000540012.5;ENST00000507069.5;ENST00000515082.5;ENST00000514193.5	5.768	6.386	2.170	0.126(1208)	0.312(219)	0.427(7423)	non tumor-specific	exon_skip	yes
UN_IFI6_LS0030	chr1:27666477|27668230:+	IFI6	interferon alpha inducible protein 6	protein coding gene	no	.	9.688	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
SRGAP2C_LS012	chr1:121374954|121382704:+	SRGAP2C	SLIT-ROBO Rho GTPase activating protein 2C	protein coding gene	no	ENST00000304465.7	1.037	0.818	1.287	0.801(7676)	0.823(578)	0.59(10259)	non tumor-specific	nAS	yes
MAPK10_LS049	chr4:86354644|86356462:-	MAPK10	mitogen-activated protein kinase 10	protein coding gene	yes	ENST00000640490.1;ENST00000639234.1;ENST00000639175.1;ENST00000640064.1;ENST00000515650.2	0.122	0.077	0.822	0.06(576)	0.05(35)	0.06(1036)	non tumor-specific	exon_skip	yes
LINC00917_LS001	chr16:86332678|86332959:-	LINC00917	long intergenic non-protein coding RNA 917	lncRNA gene	no	ENST00000600892.5;ENST00000594203.5;ENST00000601556.5	13.759	0.000	0.702	0(1)	0(0)	0.043(741)	non tumor-specific	nAS	yes
SPOCK3_LS010	chr4:166889244|167000349:-	SPOCK3	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	protein coding gene	no	ENST00000515143.5;ENST00000507086.5;ENST00000502741.5	0.493	0.231	1.811	0.156(1493)	0.132(93)	0.095(1651)	non tumor-specific	exon_skip	yes
NOXRED1_LS005	chr14:77407645|77413934:-	NOXRED1	NADP dependent oxidoreductase domain containing 1	protein coding gene	no	ENST00000380835.6;ENST00000555901.1;ENST00000555603.1	0.532	0.098	0.850	0.044(422)	0.026(18)	0.423(7346)	non tumor-specific	nAS	yes
AP001107.5_LS003	chr11:66410368|66410856:+	AP001107.5	-	lncRNA gene	no	ENST00000533759.1	0.820	0.666	1.337	0.072(694)	0.207(145)	0.346(6014)	non tumor-specific	nAS	yes
LMO2_LS007	chr11:33869586|33869710:-	LMO2	LIM domain only 2	protein coding gene	yes	ENST00000257818.2	1.162	0.608	0.801	0.14(1342)	0.14(98)	0.286(4967)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_B3GALT5_LS0069	chr21:39646622|39652574:+	B3GALT5	beta-1,3-galactosyltransferase 5	protein coding gene	no	.	3.329	0.755	0.000	0.009(82)	0.021(15)	0(0)	non tumor-specific	alt_3prime	no
TRAPPC6A_LS009	chr19:45165194|45178093:-	TRAPPC6A	trafficking protein particle complex 6A	protein coding gene	no	ENST00000006275.8;ENST00000587818.1	24.881	13.455	7.937	0.991(9497)	0.993(697)	0.973(16913)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC009086.2_LS0053	chr16:29666971|29670734:+	AC009086.2	-	protein coding gene	no	.	1.834	1.163	0.000	0.016(157)	0.037(26)	0(0)	non tumor-specific	nAS	no
NSF_LS015	chr17:46694662|46704759:+	NSF	N-ethylmaleimide sensitive factor, vesicle fusing ATPase	protein coding gene	no	ENST00000398238.8;ENST00000575068.5	28.176	33.800	3.535	0.971(9305)	0.989(694)	0.927(16109)	non tumor-specific	exon_skip	yes
ADGRG2_LS030	chrX:19037490|19037598:-	ADGRG2	adhesion G protein-coupled receptor G2	protein coding gene	no	ENST00000357991.7	1.429	1.942	0.812	0.118(1126)	0.134(94)	0.201(3499)	non tumor-specific	alt_5prime;exon_skip	yes
PAK5_LS010	chr20:9711435|9818680:-	PAK5	p21 (RAC1) activated kinase 6	protein coding gene	no	ENST00000378429.3	0.583	0.476	1.254	0.075(722)	0.094(66)	0.15(2609)	non tumor-specific	exon_skip;mutex_exons	yes
UN_UBE2Q2P2_LS0015	chr15:82382298|82395233:+	UBE2Q2P2	ubiquitin conjugating enzyme E2 Q2 pseudogene 2	pseudogene	no	.	1.270	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
NF1P4_LS001	chr14:19494591|19495767:+	NF1P4	neurofibromin 1 pseudogene 4	pseudogene	no	ENST00000549579.2	2.232	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_ZNF718_LS0018	chr4:127125|134168:+	ZNF718	zinc finger protein 718	protein coding gene	no	.	3.154	0.225	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SLC2A5_LS0014	chr1:9057570|9058152:-	SLC2A5	solute carrier family 2 member 5	protein coding gene	no	.	11.073	0.051	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
C1orf109_LS008	chr1:37689883|37690002:-	C1orf109	chromosome 1 open reading frame 109	protein coding gene	no	ENST00000486637.1	0.831	0.396	1.689	0.843(8072)	0.829(582)	0.763(13255)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
TMEM131_LS035	chr2:97815307|97833365:-	TMEM131	transmembrane protein 131	protein coding gene	no	ENST00000418629.6	0.379	0.160	0.703	0.079(759)	0.07(49)	0.197(3430)	non tumor-specific	exon_skip	yes
UN_AC104417.1_UP_LS0007	chr8:142194686|142194811:-	AC104417.1	-	pseudogene	no	.	2.186	1.347	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADD2_LS005	chr2:70673006|70674678:-	ADD2	adducin 2	protein coding gene	no	ENST00000403045.6;ENST00000264436.8;ENST00000407644.6;ENST00000403045.6;ENST00000264436.8;ENST00000407644.6	14.126	3.209	1.962	0.335(3209)	0.248(174)	0.676(11751)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LMF1_LS0035	chr16:859342|859556:+	LMF1	lipase maturation factor 1	protein coding gene	no	.	3.080	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NAP1L4_LS0056	chr11:2979237|2988073:-	NAP1L4	nucleosome assembly protein 1 like 4	protein coding gene	no	.	1.548	0.158	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TMEM132D-AS1_LS002	chr12:129109757|129113065:+	TMEM132D-AS1	TMEM132D antisense RNA 1	lncRNA gene	no	ENST00000510001.6	0.052	0.000	0.585	0.025(237)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_GLT1D1_UP_LS0002	chr12:128825890|128827669:+	GLT1D1	glycosyltransferase 1 domain containing 1	protein coding gene	no	.	1.397	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM230_LS0024	chr20:5106222|5109332:-	TMEM230	transmembrane protein 230	protein coding gene	no	.	8.067	7.408	0.000	0.013(129)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MVP_LS027	chr16:29841840|29841915:+	MVP	major vault protein	protein coding gene	no	ENST00000395353.5;ENST00000357402.9	319.019	209.499	139.023	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CTDSP1_LS0060	chr2:218404635|218404681:-	CTDSP1	CTD small phosphatase 1	protein coding gene	no	.	4.562	1.404	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LIFR_LS0007	chr5:38490291|38490561:-	LIFR	LIF receptor subunit alpha	protein coding gene	yes	.	1.108	0.037	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MT-TS1_UP_LS0355	chrM:7905|11103:-	MT-TS1	mitochondrially encoded tRNA-Ser (UCN) 1	small non-coding RNA gene	no	.	589.204	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ASB9_LS011	chrX:15258945|15269781:-	ASB9	ankyrin repeat and SOCS box containing 9	protein coding gene	no	ENST00000380483.7;ENST00000380485.7;ENST00000380488.8;ENST00000546332.1;ENST00000473862.5;ENST00000470015.1	4.200	3.888	1.937	0.761(7287)	0.903(634)	0.719(12495)	non tumor-specific	alt_5prime;exon_skip	yes
NFIX_LS005	chr19:13024680|13025021:+	NFIX	nuclear factor I X	protein coding gene	no	ENST00000358552.7;ENST00000360105.8	0.138	0.013	0.881	0.065(621)	0.064(45)	0.07(1218)	non tumor-specific	alt_5prime	yes
AP003064.1_LS001	chr11:62391613|62392881:-	AP003064.1	-	lncRNA gene	no	ENST00000526045.1	0.094	0.072	0.937	0.473(4534)	0.513(360)	0.108(1885)	non tumor-specific	nAS	yes
UN_SPINDOC_LS0013	chr11:63822848|63826966:+	SPINDOC	spindlin interactor and repressor of chromatin binding	protein coding gene	no	.	3.752	0.523	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RAI14_LS007	chr5:34656959|34686872:+	RAI14	retinoic acid induced 14	protein coding gene	no	ENST00000514873.5	0.013	0.009	0.555	0.151(1442)	0.118(83)	0.004(74)	non tumor-specific	nAS	yes
UN_DENND1B_LS0004	chr1:197510972|197511856:-	DENND1B	DENN domain containing 1B	protein coding gene	no	.	1.392	0.262	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
AIFM2_LS011	chr10:70123520|70123907:-	AIFM2	apoptosis inducing factor mitochondria associated 2	protein coding gene	no	ENST00000373248.5;ENST00000613322.4;ENST00000307864.2	30.835	20.500	22.666	0.98(9391)	0.996(699)	0.976(16962)	non tumor-specific	nAS	yes
UN_PMS2P1_LS0026	chr7:100332581|100334009:-	PMS2P1	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudogene	no	.	1.219	0.033	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TSPY24P_UP_LS0012	chrY:8204099|8230695:+	TSPY24P	testis specific protein Y-linked 24, pseudogene	pseudogene	no	.	1.990	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PARL_LS0005	chr3:183868001|183884733:+	PARL	presenilin associated rhomboid like	protein coding gene	no	.	1.427	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PCMTD1_LS001	chr8:51820718|51831444:-	PCMTD1	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein coding gene	no	ENST00000544451.2;ENST00000360540.9;ENST00000519559.1;ENST00000522514.5	27.807	27.908	30.132	0.944(9045)	0.922(647)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FGF1_LS013	chr5:142614161|142697622:-	FGF1	fibroblast growth factor 1	protein coding gene	no	ENST00000621536.4;ENST00000489937.5;ENST00000407758.5;ENST00000494344.5;ENST00000441680.6	1.139	10.254	4.333	0.486(4657)	0.648(455)	0.591(10270)	non tumor-specific	alt_5prime;exon_skip	yes
UN_KHDRBS2_LS0015	chr6:61749683|61816955:-	KHDRBS2	KH RNA binding domain containing, signal transduction associated 2	protein coding gene	no	.	1.150	0.816	0.000	0.002(16)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_MTND3P1_UP_LS0017	chr13:22696015|22696127:-	MTND3P1	MT-ND3 pseudogene 1	pseudogene	no	.	109.312	7.493	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPT2_LS001	chr16:46884467|46884694:+	GPT2	glutamic--pyruvic transaminase 2	protein coding gene	no	ENST00000340124.8	0.703	0.849	2.906	0.617(5916)	0.564(396)	0.722(12544)	non tumor-specific	alt_3prime	yes
SQLE_LS006	chr8:125003428|125005525:+	SQLE	squalene epoxidase	protein coding gene	no	ENST00000523430.5;ENST00000265896.9;ENST00000521232.1	81.252	34.865	20.092	0.982(9411)	0.993(697)	0.968(16821)	non tumor-specific	alt_3prime;alt_5prime	yes
CDAN1_LS027	chr15:42735374|42735510:-	CDAN1	codanin 1	protein coding gene	no	ENST00000356231.4;ENST00000643434.1	10.526	5.702	11.931	0.895(8576)	0.933(655)	0.974(16931)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LINC00665_LS0003	chr19:36316070|36317635:-	LINC00665	long intergenic non-protein coding RNA 665	lncRNA gene	no	.	4.794	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
MED15_LS008	chr22:20497566|20500741:+	MED15	mediator complex subunit 15	protein coding gene	no	.;.	0.499	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PCDH15_LS005	chr10:53809546|54213936:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000395442.5	0.087	0.005	0.994	0.024(229)	0.01(7)	0(4)	non tumor-specific	nAS	yes
UN_NSMF_LS0065	chr9:137459130|137459157:-	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein coding gene	no	.	1.820	0.232	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MIR200B_UP_LS0010	chr1:1159784|1160489:+	MIR200B	microRNA 200b	small non-coding RNA gene	yes	.	1.360	0.326	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	nAS	no
NOM1_LS002	chr7:156952598|156954103:+	NOM1	nucleolar protein with MIF4G domain 1	protein coding gene	no	ENST00000275820.3	15.344	8.132	9.663	0.964(9240)	0.984(691)	0.971(16874)	non tumor-specific	alt_5prime;exon_skip	yes
GABRB3_LS020	chr15:26625534|26628977:-	GABRB3	gamma-aminobutyric acid type A receptor subunit beta3	protein coding gene	no	ENST00000556166.2	2.013	0.707	0.655	0.058(556)	0.047(33)	0.068(1183)	non tumor-specific	exon_skip	yes
AC093158.1_LS001	chr1:74366726|74368989:-	AC093158.1	-	lncRNA gene	no	ENST00000415549.2	2.710	0.000	0.775	0(1)	0(0)	0.003(56)	non tumor-specific	nAS	yes
UN_TMEM8B_LS0031	chr9:35841267|35841541:+	TMEM8B	transmembrane protein 8B	protein coding gene	no	.	1.743	0.827	0.000	0.004(41)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
RRP12_LS045	chr10:97424278|97425674:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000619048.1	0.444	0.119	0.673	0.031(293)	0.05(35)	0.09(1571)	non tumor-specific	nAS	yes
UN_CDK5RAP1_LS0054	chr20:33399869|33401428:-	CDK5RAP1	CDK5 regulatory subunit associated protein 1	protein coding gene	no	.	0.657	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
TBPL2_LS001	chr14:55414455|55424159:-	TBPL2	TATA-box binding protein like 2	protein coding gene	no	ENST00000247219.5	1.651	0.359	0.712	0.012(118)	0.001(1)	0.014(243)	non tumor-specific	nAS	yes
ECI1_LS009	chr16:2251429|2251515:-	ECI1	enoyl-CoA delta isomerase 1	protein coding gene	no	ENST00000301729.8;ENST00000562238.5;ENST00000561688.1	2.289	1.883	0.833	0.469(4493)	0.366(257)	0.39(6772)	non tumor-specific	alt_5prime;intron_retention	yes
UN_MREG_LS0008	chr2:215947113|215961109:-	MREG	melanoregulin	protein coding gene	no	.	1.580	0.354	0.000	0.023(216)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
UN_ACTN4_LS0189	chr19:38729110|38729427:-	ACTN4	actinin alpha 4	protein coding gene	yes	.	5.415	0.435	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	nAS	no
WDR66_LS037	chr12:121999944|122001497:+	WDR66	cilia and flagella associated protein 251	protein coding gene	no	ENST00000288912.8;ENST00000428465.2	20.424	2.562	3.536	0.725(6948)	0.768(539)	0.821(14267)	non tumor-specific	exon_skip	yes
UN_NOC2L_LS0028	chr1:946545|946757:-	NOC2L	NOC2 like nucleolar associated transcriptional repressor	protein coding gene	no	.	4.330	0.488	0.000	0.016(154)	0.009(6)	0(0)	non tumor-specific	exon_skip;intron_retention	no
ADAM2_LS011	chr8:39767251|39769392:-	ADAM2	ADAM metallopeptidase domain 2	protein coding gene	no	ENST00000347580.8;ENST00000379853.6;ENST00000265708.8;ENST00000622267.1;ENST00000521880.5;ENST00000520434.1	2.385	0.367	0.742	0.01(98)	0.001(1)	0.013(222)	non tumor-specific	nAS	yes
PLEKHA5_LS001	chr12:19129888|19130051:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	ENST00000540972.5;ENST00000429027.6;ENST00000539256.5;ENST00000299275.10;ENST00000538714.5	5.201	5.015	6.307	0.83(7956)	0.885(621)	0.903(15701)	non tumor-specific	nAS	yes
UN_AC140479.7_LS0009	chr2:110327595|110328236:+	AC140479.7	-	pseudogene	no	.	1.478	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
BCAT2_LS004	chr19:48796502|48796578:-	BCAT2	branched chain amino acid transaminase 2	protein coding gene	no	ENST00000545387.6;ENST00000402551.5;ENST00000316273.10;ENST00000593515.5;ENST00000597011.5;ENST00000599246.5;ENST00000599510.1;ENST00000598162.5	116.824	77.051	78.001	0.996(9546)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC01896_LS002	chr18:78977429|78978463:-	LINC01896	long intergenic non-protein coding RNA 1896	lncRNA gene	no	ENST00000575722.1	2.154	0.629	16.735	0.129(1235)	0.208(146)	0.184(3195)	non tumor-specific	nAS	yes
UN_GGNBP1_UP_LS0011	chr6:33489473|33490153:+	GGNBP1	gametogenetin binding protein 1 (pseudogene)	pseudogene	no	.	3.591	0.688	0.000	0.005(47)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CPOX_UP_LS0007	chr3:98710162|98715376:-	CPOX	coproporphyrinogen oxidase	protein coding gene	no	.	1.904	0.127	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNU6-933P_UP_LS0012	chr11:61030395|61064864:-	RNU6-933P	RNA, U6 small nuclear 933, pseudogene	small non-coding RNA gene	no	.	1.433	0.042	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNTN5_LS026	chr11:99819765|99844852:+	CNTN5	contactin 5	protein coding gene	no	ENST00000528727.5;ENST00000527185.5;ENST00000528682.5;ENST00000524871.5;ENST00000279463.7	4.008	0.494	1.078	0.03(284)	0.091(64)	0.13(2264)	non tumor-specific	exon_skip	yes
UN_H3F3B_LS0065	chr17:75779169|75779675:+	H3F3B	H3.3 histone B	protein coding gene	no	.	36.449	0.861	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPR_LS052	chr1:186361869|186362288:-	TPR	translocated promoter region, nuclear basket protein	protein coding gene	yes	ENST00000367478.8;ENST00000474852.1;ENST00000613151.1	26.764	15.494	13.509	0.896(8586)	0.959(673)	0.964(16752)	non tumor-specific	nAS	yes
HCN3_LS017	chr1:155289007|155289391:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	ENST00000492035.1	0.528	0.138	1.483	0.447(4284)	0.301(211)	0.597(10371)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FKBP10_LS0065	chr17:41821784|41822286:-	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	1.315	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FTLP10_LS0009	chr4:68188756|68191249:-	FTLP10	ferritin light chain pseudogene 10	pseudogene	no	.	2.728	2.560	0.000	0.01(95)	0.036(25)	0(0)	non tumor-specific	nAS	no
TEX41_LS028	chr2:144863998|145171998:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000627757.2	0.000	0.000	0.774	0(2)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_DPP6_LS0016	chr7:154116112|154117820:-	DPP6	dipeptidyl peptidase like 6	protein coding gene	no	.	2.977	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PIK3R6_LS001	chr17:8803429|8803662:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	ENST00000613555.4	1.024	0.532	0.760	0.009(85)	0.001(1)	0.066(1154)	non tumor-specific	alt_5prime;exon_skip	yes
TRBV6-2_LS001	chr7:142349280|142349370:+	TRBV6-2	T cell receptor beta variable 6-2	no	no	ENST00000634383.1	5.256	1.638	1.148	0.162(1552)	0.171(120)	0.212(3686)	non tumor-specific	nAS	yes
SULT2A1_LS003	chr19:47879130|47882084:-	SULT2A1	sulfotransferase family 2A member 1	protein coding gene	no	ENST00000222002.3	141.630	166.201	1.088	0.102(973)	0.168(118)	0.178(3088)	non tumor-specific	exon_skip	yes
UN_CD59_LS0071	chr11:33723029|33731424:-	CD59	CD59 molecule (CD59 blood group)	protein coding gene	no	.	1.268	1.287	0.000	0.012(119)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
WAC-AS1_LS003	chr10:28526008|28532442:-	WAC-AS1	WAC antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000527986.5	2.361	2.321	4.823	0.951(9108)	0.974(684)	0.95(16513)	non tumor-specific	nAS	yes
UN_CCDC198_LS0013	chr14:57483190|57490988:-	CCDC198	coiled-coil domain containing 198	protein coding gene	no	.	3.445	2.089	0.000	0.002(20)	0.009(6)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PAAF1_LS0001	chr11:73876763|73878779:+	PAAF1	proteasomal ATPase associated factor 1	protein coding gene	no	.	1.352	0.407	0.000	0.017(161)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
JPH4_LS006	chr14:23577624|23577869:-	JPH4	junctophilin 4	protein coding gene	no	ENST00000397118.7	0.515	0.014	1.642	0.078(746)	0.06(42)	0.143(2481)	non tumor-specific	exon_skip	yes
UN_CD46_UP_LS0004	chr1:207747090|207747714:+	CD46	CD46 molecule	protein coding gene	no	.	3.893	0.283	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
NCOR1_LS003	chr17:16034944|16039433:-	NCOR1	nuclear receptor corepressor 1	protein coding gene	no	ENST00000268712.7;ENST00000395851.5;ENST00000580617.5;ENST00000395849.6;ENST00000582565.1;ENST00000579573.2	71.677	52.067	74.023	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MED15_LS031	chr22:20551487|20553145:+	MED15	mediator complex subunit 15	protein coding gene	no	ENST00000445987.5;ENST00000414658.5;ENST00000433831.5;ENST00000432052.5;ENST00000292733.11;ENST00000263205.11;ENST00000406969.5;ENST00000382974.6;ENST00000441501.5;ENST00000445189.5;ENST00000451058.5;ENST00000457322.5;ENST00000428629.5;ENST00000424287.5;ENST00000423862.5;ENST00000487550.5;ENST00000445987.5;ENST00000414658.5;ENST00000433831.5;ENST00000432052.5;ENST00000292733.11;ENST00000263205.11;ENST00000406969.5;ENST00000382974.6;ENST00000441501.5;ENST00000445189.5;ENST00000451058.5;ENST00000457322.5;ENST00000428629.5;ENST00000424287.5;ENST00000423862.5;ENST00000487550.5	34.327	18.533	47.523	0.985(9434)	0.99(695)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ANKZF1_LS0006	chr2:219234288|219234814:+	ANKZF1	ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1	protein coding gene	no	.	4.808	0.490	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SLC38A8_LS010	chr16:84036900|84041969:-	SLC38A8	solute carrier family 38 member 8	protein coding gene	no	ENST00000299709.7;ENST00000568178.1	4.219	0.065	0.820	0.039(376)	0.003(2)	0.04(703)	non tumor-specific	exon_skip	yes
UN_MIR6724-4_UP_LS0313	chr21:8259844|8398541:+	MIR6724-4	microRNA 6724-4	small non-coding RNA gene	no	.	618.163	130.652	0.000	0.008(81)	0.006(4)	0(0)	non tumor-specific	nAS	no
NME8_LS008	chr7:37857345|37862028:+	NME8	NME/NM23 family member 8	protein coding gene	no	ENST00000199447.8;ENST00000455500.5;ENST00000444718.5;ENST00000440017.5	0.992	0.000	0.840	0.009(83)	0(0)	0.109(1903)	non tumor-specific	nAS	yes
UN_ELN_LS0006	chr7:74046060|74046188:+	ELN	small integral membrane protein 6	protein coding gene	no	.	2.595	0.612	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_SUPT3H_LS0061	chr6:45365301|45368376:-	SUPT3H	SPT3 homolog, SAGA and STAGA complex component	protein coding gene	no	.	2.226	0.080	0.000	0.008(74)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
VIPAS39_LS023	chr14:77454102|77457318:-	VIPAS39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein coding gene	no	ENST00000556412.4	0.046	0.047	0.578	0.061(584)	0.054(38)	0.004(66)	non tumor-specific	nAS	yes
SCN7A_LS002	chr2:166409935|166410220:-	SCN7A	sodium voltage-gated channel alpha subunit 7	protein coding gene	no	ENST00000619410.4;ENST00000621965.4;ENST00000409855.6;ENST00000643258.1;ENST00000441411.2;ENST00000424326.5	3.580	5.650	4.937	0.21(2009)	0.628(441)	0.758(13170)	non tumor-specific	exon_skip	yes
UN_AC078845.1_UP_LS0001	chr7:135981058|136027164:+	AC078845.1	-	lncRNA gene	no	.	1.523	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TCEA2_LS0023	chr20:64057651|64059613:+	TCEA2	transcription elongation factor A2	protein coding gene	no	.	8.362	0.014	0.000	0.014(131)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ARHGAP45_LS024	chr19:1080547|1080682:+	ARHGAP45	Rho GTPase activating protein 45	protein coding gene	no	ENST00000539243.6;ENST00000313093.6;ENST00000587602.5;ENST00000591293.2;ENST00000590214.5;ENST00000586866.5;ENST00000543365.5;ENST00000590577.2	32.131	11.585	10.466	0.957(9165)	0.97(681)	0.958(16644)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ZBTB4_LS0061	chr17:7462987|7463622:-	ZBTB4	zinc finger and BTB domain containing 4	protein coding gene	yes	.	5.195	2.235	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
KPNA3_LS015	chr13:49732776|49732957:-	KPNA3	karyopherin subunit alpha 3	protein coding gene	no	ENST00000261667.7	29.659	22.352	15.754	0.929(8904)	0.984(691)	0.973(16914)	non tumor-specific	exon_skip	yes
DCLK2_LS026	chr4:150249684|150253474:+	DCLK2	doublecortin like kinase 2	protein coding gene	no	ENST00000411937.6;ENST00000634233.1;ENST00000411937.6;ENST00000634233.1	3.004	2.135	2.609	0.542(5193)	0.671(471)	0.76(13203)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PPP1CA_LS019	chr11:67419597|67420979:-	PPP1CA	protein phosphatase 1 catalytic subunit alpha	protein coding gene	yes	ENST00000546202.5;ENST00000542876.1	0.072	0.035	0.772	0.258(2471)	0.272(191)	0.236(4107)	non tumor-specific	nAS	yes
GPR141_LS010	chr7:37829472|37833416:+	GPR141	G protein-coupled receptor 141	protein coding gene	no	ENST00000461610.5	0.003	0.000	0.696	0.001(14)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_SGPP2_LS0013	chr2:222474723|222521767:+	SGPP2	sphingosine-1-phosphate phosphatase 2	protein coding gene	no	.	8.223	2.034	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AARS_LS0023	chr16:70255836|70258053:-	AARS	alanyl-tRNA synthetase 1	protein coding gene	no	.	34.112	9.466	0.000	0.035(331)	0.024(17)	0(0)	non tumor-specific	alt_5prime	no
HGF_LS006	chr7:81710243|81711481:-	HGF	SOS Ras/Rac guanine nucleotide exchange factor 1	protein coding gene	no	ENST00000644543.1;ENST00000222390.10;ENST00000457544.7	3.585	3.766	3.383	0.402(3854)	0.769(540)	0.752(13073)	non tumor-specific	nAS	yes
OSMR_LS007	chr5:38881764|38883827:+	OSMR	oncostatin M receptor	protein coding gene	no	ENST00000502536.5;ENST00000274276.7;ENST00000502536.5;ENST00000274276.7	32.754	17.215	23.725	0.886(8487)	0.974(684)	0.923(16050)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF609_LS0017	chr15:64499587|64622827:+	ZNF609	zinc finger protein 609	protein coding gene	no	.	1.305	0.226	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_DGCR2_LS0095	chr22:19039121|19048440:-	DGCR2	DiGeorge syndrome critical region gene 2	protein coding gene	no	.	3.566	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZC3H11A_LS026	chr1:203830203|203831661:+	ZC3H11A	zinc finger CCCH-type containing 11A	protein coding gene	no	ENST00000453771.5;ENST00000367210.2;ENST00000638800.1;ENST00000367214.5;ENST00000639812.1;ENST00000367212.7;ENST00000332127.8;ENST00000495527.5;ENST00000640465.1	32.495	20.364	69.052	0.98(9391)	0.99(695)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DNAJB5_LS0001	chr9:34989831|34990390:+	DNAJB5	DnaJ heat shock protein family (Hsp40) member B5	protein coding gene	no	.	2.324	0.231	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
CDK15_LS017	chr2:201854937|201872278:+	CDK15	cyclin dependent kinase 15	protein coding gene	no	ENST00000451080.5;ENST00000410091.7;ENST00000260967.6;ENST00000450471.6;ENST00000434439.1;ENST00000460149.5	0.521	0.240	0.934	0.09(858)	0.171(120)	0.336(5843)	non tumor-specific	exon_skip	yes
PSTPIP1_LS016	chr15:77025604|77026116:+	PSTPIP1	proline-serine-threonine phosphatase interacting protein 1	protein coding gene	no	ENST00000559856.1	0.233	0.151	0.868	0.156(1491)	0.095(67)	0.183(3187)	non tumor-specific	exon_skip	yes
ZEB1_LS033	chr10:31389695|31461037:+	ZEB1	zinc finger E-box binding homeobox 1	protein coding gene	no	ENST00000560909.2	0.698	0.000	0.584	0.001(5)	0(0)	0.016(280)	non tumor-specific	nAS	yes
RPGR_LS031	chrX:38321089|38322853:-	RPGR	retinitis pigmentosa GTPase regulator	protein coding gene	no	ENST00000318842.11;ENST00000642395.1;ENST00000339363.7;ENST00000482855.5;ENST00000642170.1;ENST00000644238.1;ENST00000642739.1;ENST00000645124.1;ENST00000644337.1;ENST00000474584.5;ENST00000646020.1;ENST00000645032.1;ENST00000378505.7;ENST00000647261.1;ENST00000642373.1	7.275	5.403	7.574	0.863(8271)	0.939(659)	0.96(16692)	non tumor-specific	exon_skip	yes
COL5A2_LS046	chr2:189085772|189086726:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	ENST00000374866.8;ENST00000618828.1;ENST00000649066.1;ENST00000649966.1	44.508	17.017	16.658	0.872(8359)	0.937(658)	0.898(15613)	non tumor-specific	exon_skip	yes
MYT1L_LS027	chr2:1912110|1917205:-	MYT1L	myelin transcription factor 1 like	protein coding gene	no	ENST00000647755.1;ENST00000647738.1;ENST00000644820.1;ENST00000648627.1;ENST00000399161.7;ENST00000648339.1;ENST00000649840.1;ENST00000648928.1;ENST00000648318.1;ENST00000647618.1;ENST00000650485.1;ENST00000650560.1;ENST00000648933.1;ENST00000648753.1;ENST00000647687.1;ENST00000648931.1;ENST00000649207.1;ENST00000647694.1;ENST00000649663.1;ENST00000428368.7;ENST00000648316.1;ENST00000648665.1;ENST00000648943.1;ENST00000648430.1;ENST00000470954.2;ENST00000602387.5;ENST00000650081.1;ENST00000649641.1;ENST00000649709.1	3.935	5.400	10.282	0.056(537)	0.007(5)	0.186(3235)	non tumor-specific	exon_skip	yes
SPATA31A3_LS001	chr9:66990189|66990445:-	SPATA31A3	SPATA31 subfamily A member 3	protein coding gene	no	ENST00000428649.4	0.509	0.000	0.617	0.012(116)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_SPG11_LS0008	chr15:44565448|44565854:-	SPG11	SPG11 vesicle trafficking associated, spatacsin	protein coding gene	no	.	3.051	0.087	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
LRRC45_LS007	chr17:82024763|82025000:+	LRRC45	leucine rich repeat containing 45	protein coding gene	no	ENST00000306688.7;ENST00000583383.5;ENST00000577638.1	14.001	5.709	10.934	0.992(9502)	0.996(699)	0.975(16941)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_LAMC2_LS0036	chr1:183240375|183243284:-	LAMC2	laminin subunit gamma 2	protein coding gene	no	.	3.150	0.499	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ENPP6_LS007	chr4:184153733|184203979:-	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein coding gene	no	ENST00000512353.1	0.802	0.034	0.843	0.01(93)	0.007(5)	0.044(768)	non tumor-specific	exon_skip	yes
ACVR2B_LS001	chr3:38454374|38477287:+	ACVR2B	activin A receptor type 2B	protein coding gene	no	ENST00000352511.4;ENST00000465020.5	0.208	0.133	0.772	0.57(5464)	0.53(372)	0.35(6079)	non tumor-specific	nAS	yes
UN_PEAK1_LS0083	chr15:77286504|77312819:-	PEAK1	pseudopodium enriched atypical kinase 1	protein coding gene	no	.	3.220	0.089	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
SF3B2_LS013	chr11:66055320|66055535:+	SF3B2	splicing factor 3b subunit 2	protein coding gene	no	ENST00000533421.2	0.925	0.656	0.613	0.759(7274)	0.755(530)	0.036(618)	non tumor-specific	alt_5prime	yes
UN_TBC1D14_LS0082	chr4:7032804|7032869:-	TBC1D14	TBC1 domain family member 14	protein coding gene	no	.	4.200	0.110	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_JMY_LS0028	chr5:79284873|79284913:-	JMY	junction mediating and regulatory protein, p53 cofactor	protein coding gene	no	.	0.327	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ODF3B_LS006	chr22:50531291|50531570:-	ODF3B	outer dense fiber of sperm tails 3B	protein coding gene	no	.;.	1.705	0.264	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FOXRED2_LS0015	chr22:36487878|36488885:+	FOXRED2	FAD dependent oxidoreductase domain containing 2	protein coding gene	no	.	1.333	0.771	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
BTK_LS015	chrX:101362689|101369998:-	BTK	Bruton tyrosine kinase	protein coding gene	yes	ENST00000618050.4;ENST00000372880.5;ENST00000621635.4;ENST00000308731.7	14.777	4.850	3.630	0.657(6292)	0.704(494)	0.81(14081)	non tumor-specific	nAS	yes
SEMA3G_LS015	chr3:52442304|52444913:-	SEMA3G	semaphorin 3G	protein coding gene	no	ENST00000465657.1	0.339	0.201	0.886	0.092(877)	0.363(255)	0.18(3127)	non tumor-specific	exon_skip	yes
ABCA17P_LS014	chr16:2379581|2386104:+	ABCA17P	ATP binding cassette subfamily A member 17, pseudogene	pseudogene	no	ENST00000469908.5;ENST00000494925.1	2.999	0.000	0.878	0.005(45)	0(0)	0.187(3250)	non tumor-specific	nAS	yes
UN_OSGEP_LS0021	chr14:20452149|20452281:-	OSGEP	O-sialoglycoprotein endopeptidase	protein coding gene	no	.	8.025	0.529	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_VDAC1P5_UP_LS0029	chr12:54942934|54946116:-	VDAC1P5	voltage dependent anion channel 1 pseudogene 5	pseudogene	no	.	6.025	0.455	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AL133419.1_UP_LS0008	chr20:40008900|40010129:+	AL133419.1	-	lncRNA gene	no	.	1.454	0.825	0.000	0.002(18)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_ALKBH2_LS0008	chr12:109090204|109092507:-	ALKBH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein coding gene	no	.	18.687	2.257	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
EML6_LS047	chr2:54967231|54968128:+	EML6	EMAP like 6	protein coding gene	no	ENST00000490828.5	0.248	0.077	0.860	0.033(312)	0.044(31)	0.108(1884)	non tumor-specific	alt_5prime	yes
IGF2BP2_LS012	chr3:185675431|185675791:-	IGF2BP2	insulin like growth factor 2 mRNA binding protein 2	protein coding gene	no	ENST00000382199.6;ENST00000457616.6;ENST00000346192.7;ENST00000421047.3;ENST00000494906.1;ENST00000496495.1	34.131	7.099	7.838	0.869(8325)	0.915(642)	0.909(15793)	non tumor-specific	alt_3prime	yes
UN_GM2A_LS0065	chr5:151269012|151269079:-	GM2A	GM2 ganglioside activator	protein coding gene	no	.	2.559	0.310	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
SDR39U1_LS018	chr14:24440926|24442178:-	SDR39U1	short chain dehydrogenase/reductase family 39U member 1	protein coding gene	no	ENST00000538105.6;ENST00000555830.1;ENST00000538105.6;ENST00000555830.1	0.161	0.227	4.839	0.91(8716)	0.949(666)	0.963(16746)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
GCC2_LS031	chr2:108490014|108492573:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	ENST00000309863.10;ENST00000482325.5	36.192	31.110	22.851	0.973(9327)	0.989(694)	0.978(17003)	non tumor-specific	nAS	yes
MIS18BP1_LS021	chr14:45241870|45242034:-	MIS18BP1	MIS18 binding protein 1	protein coding gene	no	ENST00000492652.1	0.127	0.035	0.642	0.046(445)	0.037(26)	0.045(774)	non tumor-specific	intron_retention	yes
EIF3E_LS005	chr8:108214716|108216412:-	EIF3E	eukaryotic translation initiation factor 3 subunit E	protein coding gene	yes	ENST00000220849.9;ENST00000519030.5;ENST00000521614.5;ENST00000519517.5;ENST00000519627.1	937.517	487.601	532.513	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MYDGF_LS0014	chr19:4657651|4657776:+	MYDGF	myeloid derived growth factor	protein coding gene	no	.	8.104	0.254	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
ST18_LS045	chr8:52246664|52409328:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000520279.5	2.234	0.157	1.954	0.032(311)	0.007(5)	0.111(1933)	non tumor-specific	exon_skip	yes
SNX7_LS002	chr1:98661911|98684885:+	SNX7	sorting nexin 7	protein coding gene	no	ENST00000529992.5;ENST00000306121.7	10.137	7.992	12.920	0.909(8713)	0.967(679)	0.925(16084)	non tumor-specific	exon_skip	yes
C11orf16_LS013	chr11:8927708|8929377:-	C11orf16	chromosome 11 open reading frame 16	protein coding gene	no	ENST00000528998.5;ENST00000526227.3	0.241	0.093	0.959	0.03(287)	0.074(52)	0.021(365)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF137P_UP_LS0011	chr19:52584441|52587791:+	ZNF137P	zinc finger protein 137, pseudogene	pseudogene	no	.	1.580	0.102	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLA2G2F_LS0014	chr1:20149674|20149776:+	PLA2G2F	phospholipase A2 group IIF	protein coding gene	no	.	41.152	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNTRL_LS0071	chr9:121175224|121177015:+	CNTRL	centriolin	protein coding gene	no	.	4.324	0.216	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
Z98752.3_LS007	chr20:43567999|43569385:+	Z98752.3	-	protein coding gene	no	ENST00000621802.1	9.550	21.044	3.557	0.513(4918)	0.597(419)	0.821(14264)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PTCSC3_LS003	chr14:36162683|36176298:-	PTCSC3	papillary thyroid carcinoma susceptibility candidate 3	lncRNA gene	yes	ENST00000556013.2	4.111	11.103	2.468	0.101(967)	0.366(257)	0.084(1466)	non tumor-specific	nAS	yes
PRDM16_LS025	chr1:3432140|3433677:+	PRDM16	PR/SET domain 16	protein coding gene	yes	ENST00000270722.9;ENST00000512462.5;ENST00000509860.1	10.526	4.783	2.326	0.254(2436)	0.513(360)	0.592(10293)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC012594.1_LS007	chr2:170341429|170343459:-	AC012594.1	-	lncRNA gene	no	ENST00000627454.2;ENST00000630496.2;ENST00000626351.2;ENST00000600436.5;ENST00000630033.2;ENST00000598749.5;ENST00000630498.2;ENST00000424391.6;ENST00000625393.2;ENST00000413923.6;ENST00000627214.2;ENST00000628535.2;ENST00000629469.2;ENST00000610274.5;ENST00000593599.1;ENST00000608503.5;ENST00000609996.5;ENST00000608716.5;ENST00000609890.5;ENST00000625968.2;ENST00000607977.5;ENST00000609097.5;ENST00000608325.5;ENST00000609666.5;ENST00000595011.5;ENST00000609532.5	0.850	0.000	0.697	0.002(22)	0(0)	0.014(244)	non tumor-specific	nAS	yes
UN_DPYSL2_LS0003	chr8:26539939|26552515:-	DPYSL2	dihydropyrimidinase like 2	protein coding gene	no	.	3.451	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LARP7P1_UP_LS0007	chr1:203427683|203429078:-	LARP7P1	LARP7 pseudogene 1	pseudogene	no	.	3.509	1.454	0.000	0.012(118)	0.026(18)	0(0)	non tumor-specific	nAS	no
HERPUD1_LS010	chr16:56936817|56939237:+	HERPUD1	homocysteine inducible ER protein with ubiquitin like domain 1	protein coding gene	no	ENST00000439977.6;ENST00000565966.5;ENST00000300302.9;ENST00000570273.5;ENST00000379792.6;ENST00000569429.5;ENST00000563343.5;ENST00000563781.5;ENST00000568358.1;ENST00000564678.1	183.065	182.542	120.356	0.996(9543)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
LRRC9_LS010	chr14:59944744|59959818:+	LRRC9	leucine rich repeat containing 9	protein coding gene	no	ENST00000445360.5;ENST00000254271.8;ENST00000647410.1;ENST00000454474.2	3.775	0.111	1.141	0.02(190)	0.011(8)	0.094(1631)	non tumor-specific	nAS	yes
AHNAK_LS104	chr11:62529781|62530550:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.;.	8.948	0.637	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CPT1C_LS010	chr19:49691953|49692239:+	CPT1C	carnitine palmitoyltransferase 1C	protein coding gene	no	ENST00000392518.8	0.063	0.259	1.069	0.123(1174)	0.044(31)	0.269(4673)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_FRMD4A_LS0023	chr10:13660553|13666097:-	FRMD4A	FERM domain containing 4A	protein coding gene	no	.	2.641	1.204	0.000	0.03(286)	0.043(30)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SIPA1L1_LS002	chr14:71320552|71321122:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000555652.5	0.494	0.235	0.670	0.111(1064)	0.063(44)	0.107(1866)	non tumor-specific	alt_5prime	yes
UN_ANK2_LS0022	chr4:113214153|113214212:+	ANK2	ankyrin 2	protein coding gene	no	.	2.704	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ANKDD1A_LS024	chr15:64944747|64947404:+	ANKDD1A	ankyrin repeat and death domain containing 1A	protein coding gene	no	ENST00000319580.12;ENST00000395720.2;ENST00000620154.4	4.585	4.965	5.833	0.491(4708)	0.642(451)	0.904(15721)	non tumor-specific	exon_skip	yes
MATK_LS026	chr19:3793398|3801532:-	MATK	megakaryocyte-associated tyrosine kinase	protein coding gene	no	ENST00000592612.1	0.030	0.031	0.832	0.017(165)	0.023(16)	0.01(171)	non tumor-specific	nAS	yes
UN_PXK_LS0016	chr3:58402572|58403862:+	PXK	PX domain containing serine/threonine kinase like	protein coding gene	no	.	0.982	0.558	0.000	0.005(45)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
DNAJC13_LS002	chr3:132434618|132446475:+	DNAJC13	DnaJ heat shock protein family (Hsp40) member C13	protein coding gene	no	ENST00000260818.10;ENST00000650455.1;ENST00000486798.5	8.493	6.078	4.588	0.775(7429)	0.9(632)	0.915(15903)	non tumor-specific	exon_skip	yes
ANKRD20A5P_LS004	chr18:14184102|14187224:+	ANKRD20A5P	ankyrin repeat domain 20 family member A5, pseudogene	pseudogene	no	ENST00000581181.5	1.350	0.783	1.188	0.268(2564)	0.397(279)	0.388(6750)	non tumor-specific	nAS	yes
UN_SNX25_LS0031	chr4:185287556|185288012:+	SNX25	sorting nexin 25	protein coding gene	no	.	4.623	6.780	0.000	0.001(13)	0.056(39)	0(0)	non tumor-specific	nAS	no
UN_PATJ_LS0034	chr1:61865521|61875243:+	PATJ	PATJ crumbs cell polarity complex component	protein coding gene	no	.	2.179	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AUTS2_LS032	chr7:70775386|70777103:+	AUTS2	activator of transcription and developmental regulator AUTS2	protein coding gene	no	ENST00000644939.1;ENST00000406775.6;ENST00000342771.9;ENST00000644506.1;ENST00000644359.1;ENST00000443672.2;ENST00000615871.4;ENST00000611706.4;ENST00000647140.1;ENST00000498384.5;ENST00000464768.2;ENST00000646136.1;ENST00000439256.2;ENST00000449547.6	10.506	8.319	13.899	0.942(9029)	0.979(687)	0.963(16733)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AHDC1_UP_LS0002	chr1:27625151|27635445:-	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	1.614	0.386	0.000	0.013(123)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_USP16_LS0009	chr21:29026707|29027873:+	USP16	ubiquitin specific peptidase 21	protein coding gene	no	.	1.152	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MNAT1_LS001	chr14:60734951|60753553:+	MNAT1	MNAT1 component of CDK activating kinase	protein coding gene	yes	ENST00000555545.1	0.072	0.037	0.763	0.471(4517)	0.476(334)	0.353(6136)	non tumor-specific	nAS	yes
UN_NBEAP1_LS0008	chr15:20671268|20672649:-	NBEAP1	neurobeachin pseudogene 1	pseudogene	no	.	1.699	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
FKRP_LS007	chr19:46747305|46748027:+	FKRP	fukutin related protein	protein coding gene	no	ENST00000600977.5;ENST00000600872.5;ENST00000602250.5;ENST00000600629.5;ENST00000600005.5	0.320	0.255	1.418	0.512(4904)	0.637(447)	0.688(11954)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC008750.5_LS001	chr19:51361792|51365153:-	AC008750.5	-	lncRNA gene	no	ENST00000595500.1	0.133	0.053	0.655	0.081(777)	0.061(43)	0.009(164)	non tumor-specific	nAS	yes
UN_RPS6P15_UP_LS0002	chr10:111501676|111635059:-	RPS6P15	ribosomal protein S6 pseudogene 15	pseudogene	no	.	4.404	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AMFR_LS0053	chr16:56409549|56414252:-	AMFR	autocrine motility factor receptor	protein coding gene	no	.	10.041	7.390	0.000	0.016(151)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TENM1_LS0005	chrX:124453491|124470725:-	TENM1	teneurin transmembrane protein 1	protein coding gene	no	.	2.633	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UCP2_LS0076	chr11:73977967|73978308:+	UCP2	uncoupling protein 2	protein coding gene	no	.	5.209	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SMIM13_LS0009	chr6:11117492|11119717:+	SMIM13	small integral membrane protein 13	protein coding gene	no	.	4.838	0.135	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NCAPH_LS010	chr2:96343304|96344105:+	NCAPH	non-SMC condensin I complex subunit H	protein coding gene	no	ENST00000240423.8;ENST00000427946.5;ENST00000477409.1;ENST00000435975.5;ENST00000455200.5	9.824	1.712	1.384	0.82(7852)	0.386(271)	0.5(8691)	non tumor-specific	alt_5prime	yes
AC002454.1_LS001	chr7:92836563|92854909:+	AC002454.1	-	lncRNA gene	no	ENST00000452050.5	5.373	0.392	0.815	0.253(2426)	0.204(143)	0.336(5842)	non tumor-specific	nAS	yes
UN_NETO2_LS0020	chr16:47134410|47143579:-	NETO2	neuropilin and tolloid like 2	protein coding gene	no	.	1.340	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
SIPA1L3_LS024	chr19:38162371|38164479:+	SIPA1L3	signal induced proliferation associated 1 like 3	protein coding gene	no	ENST00000222345.10	29.096	18.442	8.298	0.958(9181)	0.96(674)	0.968(16830)	non tumor-specific	exon_skip	yes
RBM23_LS044	chr14:22914016|22918999:-	RBM23	RNA binding motif protein 23	protein coding gene	no	ENST00000554618.5	0.071	0.000	0.622	0.091(874)	0.127(89)	0.05(867)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AC006363.1_UP_LS0001	chr7:9716909|9740954:+	AC006363.1	-	pseudogene	no	.	10.505	0.476	0.000	0.013(122)	0.001(1)	0(0)	non tumor-specific	nAS	no
DELE1_LS001	chr5:141923972|141924581:+	DELE1	DAP3 binding cell death enhancer 1	protein coding gene	no	ENST00000432126.6;ENST00000194118.8;ENST00000508751.1	43.893	32.165	42.556	0.987(9452)	0.996(699)	0.979(17019)	non tumor-specific	exon_skip	yes
UHRF2_LS010	chr9:6475500|6477622:+	UHRF2	ubiquitin like with PHD and ring finger domains 2	protein coding gene	yes	ENST00000468435.6;ENST00000276893.9;ENST00000450508.1;ENST00000484159.5	17.260	10.204	21.628	0.953(9133)	0.987(693)	0.977(16986)	non tumor-specific	nAS	yes
TRIM3_LS003	chr11:6450621|6450892:-	TRIM3	tripartite motif containing 3	protein coding gene	yes	ENST00000533309.5;ENST00000525074.5;ENST00000345851.7;ENST00000536344.5;ENST00000359518.7;ENST00000639856.1;ENST00000530724.1	14.609	12.438	30.458	0.989(9477)	0.997(700)	0.979(17009)	non tumor-specific	alt_3prime;intron_retention	yes
UN_VAT1_LS0087	chr17:43015722|43015963:+	VAT1	symbol withdrawn, see [HGNC:10934](/data/gene-symbol-report/#!/hgnc_id/HGNC:10934)	protein coding gene	no	.	6.826	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SLC12A6_LS038	chr15:34336752|34337332:-	SLC12A6	solute carrier family 12 member 6	protein coding gene	no	ENST00000354181.7	0.118	0.002	0.594	0.028(268)	0.04(28)	0.03(513)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AL121576.1_UP_LS0002	chr14:47900737|47901526:-	AL121576.1	-	pseudogene	no	.	6.916	0.211	0.000	0.057(545)	0.003(2)	0(0)	non tumor-specific	nAS	no
DTX3_LS009	chr12:57604858|57605584:+	DTX3	deltex E3 ubiquitin ligase 3	protein coding gene	no	.;.	1.516	0.051	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_RBP5_LS0002	chr12:7123899|7124038:-	RBP5	retinol binding protein 5	protein coding gene	no	.	18.511	20.680	0.000	0.038(363)	0.088(62)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AIM2_LS0016	chr1:159073519|159091569:-	AIM2	absent in melanoma 2	protein coding gene	yes	.	5.083	0.327	0.000	0.023(219)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
PGC_LS013	chr6:41742489|41743271:-	PGC	progastricsin	protein coding gene	no	ENST00000373025.7;ENST00000425343.6	956.377	5432.478	6.354	0.25(2396)	0.311(218)	0.679(11810)	non tumor-specific	alt_3prime;exon_skip	yes
TEKT1_LS010	chr17:6830393|6831649:-	TEKT1	tektin 1	protein coding gene	no	ENST00000338694.6;ENST00000575592.1;ENST00000573966.1	2.574	1.928	1.727	0.14(1339)	0.211(148)	0.134(2334)	non tumor-specific	alt_3prime;exon_skip	yes
PXDN_LS024	chr2:1669833|1673643:-	PXDN	peroxidasin	protein coding gene	no	ENST00000477810.1	0.197	0.382	0.748	0.021(200)	0.019(13)	0.211(3668)	non tumor-specific	exon_skip;mutex_exons	yes
OSBPL8_LS003	chr12:76358811|76369214:-	OSBPL8	oxysterol binding protein like 8	protein coding gene	no	ENST00000393249.6;ENST00000261183.7;ENST00000611266.4;ENST00000393250.8	12.546	10.320	18.040	0.966(9258)	0.99(695)	0.977(16980)	non tumor-specific	exon_skip	yes
FOLH1_LS007	chr11:49154492|49156717:-	FOLH1	folate hydrolase 1	protein coding gene	no	ENST00000458311.6;ENST00000256999.6;ENST00000356696.7;ENST00000525826.5;ENST00000340334.11;ENST00000533034.1;ENST00000532018.1	22.082	10.585	2.032	0.886(8485)	0.903(634)	0.499(8676)	non tumor-specific	alt_3prime;exon_skip	yes
ST6GALNAC4_LS009	chr9:127910058|127914656:-	ST6GALNAC4	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein coding gene	no	ENST00000467674.5	0.070	0.070	0.699	0.486(4652)	0.464(326)	0.127(2199)	non tumor-specific	exon_skip	yes
UN_MT-TD_UP_LS0003	chrM:5753|6700:+	MT-TD	mitochondrially encoded tRNA-Asp (GAU/C)	small non-coding RNA gene	no	.	1047.662	432.417	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MFSD12_LS0015	chr19:3538778|3544809:-	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	20.387	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FAM178B_LS0005	chr2:96876688|96877890:-	FAM178B	family with sequence similarity 178 member B	protein coding gene	no	.	3.832	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_BLCAP_LS0016	chr20:37516490|37519232:-	BLCAP	BLCAP apoptosis inducing factor	protein coding gene	yes	.	1.443	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_FOXN3_LS0006	chr14:89158024|89161701:-	FOXN3	forkhead box N3	protein coding gene	no	.	2.748	0.437	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
TMEM246-AS1_LS005	chr9:101475042|101479840:+	TMEM246-AS1	TMEM246 antisense RNA 1	lncRNA gene	no	ENST00000450109.5	0.188	0.120	0.990	0.028(264)	0.145(102)	0.009(149)	non tumor-specific	nAS	yes
AC021517.1_LS004	chr18:45483456|45527857:+	AC021517.1	-	lncRNA gene	no	ENST00000585897.1	60.777	0.000	0.576	0(3)	0(0)	0(1)	non tumor-specific	nAS	yes
UN_RNU6-737P_UP_LS0003	chr18:57329484|57423876:-	RNU6-737P	RNA, U6 small nuclear 737, pseudogene	small non-coding RNA gene	no	.	1.527	2.299	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	nAS	no
SEC23IP_LS006	chr10:119904277|119912044:+	SEC23IP	SEC23 interacting protein	protein coding gene	no	ENST00000446561.1	0.044	0.032	0.628	0.494(4734)	0.647(454)	0.064(1117)	non tumor-specific	exon_skip	yes
IQCK_LS016	chr16:19763900|19788838:+	IQCK	IQ motif containing K	protein coding gene	no	.;.	2.058	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
TLE4_LS046	chr9:79708786|79709623:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	ENST00000376552.6;ENST00000376544.7;ENST00000470872.5;ENST00000376537.8;ENST00000462803.5;ENST00000265284.10;ENST00000467142.5;ENST00000496114.5;ENST00000417836.1;ENST00000478290.2	9.138	7.669	15.998	0.897(8593)	0.981(689)	0.978(17000)	non tumor-specific	exon_skip	yes
MBIP_LS016	chr14:36316812|36319585:-	MBIP	MAP3K12 binding inhibitory protein 1	protein coding gene	no	ENST00000604160.1	0.176	0.095	0.660	0.702(6729)	0.83(583)	0.031(541)	non tumor-specific	nAS	yes
DCBLD2_LS012	chr3:98822361|98822669:-	DCBLD2	discoidin, CUB and LCCL domain containing 2	protein coding gene	no	ENST00000326840.10;ENST00000326857.9;ENST00000469648.5	14.398	9.423	5.013	0.829(7946)	0.932(654)	0.871(15148)	non tumor-specific	exon_skip;mutex_exons	yes
C3orf30_LS007	chr3:119151370|119159893:+	C3orf30	testis expressed 55	protein coding gene	no	ENST00000494105.2	0.495	0.000	0.701	0.002(17)	0(0)	0.007(122)	non tumor-specific	nAS	yes
RFC4_LS015	chr3:186794781|186797535:-	RFC4	replication factor C subunit 4	protein coding gene	no	ENST00000449502.5	0.079	0.037	0.670	0.178(1706)	0.09(63)	0.082(1424)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC246787.2_UP_LS1284	chr14:105742017|105769697:+	AC246787.2	-	lncRNA gene	no	.	6.255	3.635	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
NAP1L1_LS023	chr12:76056672|76060138:-	NAP1L1	nucleosome assembly protein 1 like 1	protein coding gene	no	ENST00000551600.5	0.043	0.000	0.651	0.001(9)	0(0)	0.017(295)	non tumor-specific	exon_skip;mutex_exons	yes
UN_KRT73-AS1_UP_LS0159	chr12:52450533|52472077:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	77.140	0.137	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
LTBP1_LS007	chr2:33187080|33188577:+	LTBP1	latent transforming growth factor beta binding protein 1	protein coding gene	no	ENST00000404816.6;ENST00000432635.1;ENST00000418533.6;ENST00000402934.5;ENST00000404525.5;ENST00000407925.5	21.186	19.803	10.984	0.86(8236)	0.972(682)	0.923(16050)	non tumor-specific	nAS	yes
UN_SGSH_LS0036	chr17:80220756|80220916:+	SGSH	N-sulfoglucosamine sulfohydrolase	protein coding gene	no	.	0.686	0.100	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HGS_LS0010	chr17:81693965|81694256:+	HGS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein coding gene	no	.	4.213	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PPP1R10P1_UP_LS0001	chr11:130801919|130804362:-	PPP1R10P1	protein phosphatase 1 regulatory subunit 10 pseudogene 1	pseudogene	no	.	1.250	0.826	0.000	0.002(17)	0.013(9)	0(0)	non tumor-specific	nAS	no
PREPL_LS021	chr2:44343951|44346268:-	PREPL	prolyl endopeptidase like	protein coding gene	no	ENST00000540817.1	0.065	0.071	1.094	0.254(2435)	0.425(298)	0.493(8573)	non tumor-specific	exon_skip	yes
UN_FAM228B_LS0006	chr2:24076798|24080876:+	FAM228B	family with sequence similarity 228 member B	protein coding gene	no	.	0.625	0.032	0.000	0.005(45)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
MGST1_LS007	chr12:16353467|16354231:+	MGST1	microsomal glutathione S-transferase 1	protein coding gene	no	ENST00000396207.1	0.405	0.124	1.340	0.015(142)	0.05(35)	0.505(8779)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
SARS_LS022	chr1:109236870|109237244:+	SARS	seryl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000369923.4	2.360	5.895	4.367	0.921(8823)	0.96(674)	0.943(16385)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
NISCH_LS018	chr3:52477642|52478097:+	NISCH	nischarin	protein coding gene	no	ENST00000479054.5;ENST00000345716.8;ENST00000488380.5;ENST00000420808.2;ENST00000464280.5;ENST00000481211.1	45.968	40.880	70.143	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC005264.1_UP_LS0002	chr19:3297010|3314059:-	AC005264.1	-	lncRNA gene	no	.	5.741	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNT11_LS0016	chr11:76194874|76196483:-	WNT11	Wnt family member 11	protein coding gene	yes	.	2.828	0.539	0.000	0.003(31)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
TACR3_LS001	chr4:103589994|103591487:-	TACR3	tachykinin receptor 3	protein coding gene	no	ENST00000304883.2	3.446	0.643	0.973	0.01(97)	0.058(41)	0.054(933)	non tumor-specific	nAS	yes
COL9A1_LS015	chr6:70252315|70253385:-	COL9A1	collagen type IX alpha 1 chain	protein coding gene	no	ENST00000357250.10;ENST00000320755.12;ENST00000360859.11;ENST00000644493.1;ENST00000489611.5;ENST00000493682.6;ENST00000489861.2	3.388	1.581	3.770	0.317(3038)	0.205(144)	0.465(8085)	non tumor-specific	exon_skip	yes
UN_AKR7A2_LS0019	chr1:19308642|19311533:-	AKR7A2	aldo-keto reductase family 7 member A2	protein coding gene	no	.	2.836	1.603	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KALRN_LS0046	chr3:124398871|124406857:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	3.378	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ATP6V0D1_LS0013	chr16:67438326|67438422:+	ATP6V0D1	ATPase H+ transporting V0 subunit d1	protein coding gene	no	.	2.170	0.593	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
IGHV3-21_LS001	chr14:106235368|106235470:-	IGHV3-21	immunoglobulin heavy variable 3-21	no	no	ENST00000390607.2	71.280	78.370	4.437	0.815(7810)	0.88(618)	0.585(10167)	non tumor-specific	nAS	yes
UN_SAMD4B_LS0045	chr19:39376791|39377447:+	SAMD4B	sterile alpha motif domain containing 4B	protein coding gene	no	.	7.706	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AFDN_LS060	chr6:167966270|167969114:+	AFDN	afadin, adherens junction formation factor	protein coding gene	no	ENST00000485634.6	8.411	14.383	3.166	0.906(8676)	0.973(683)	0.71(12340)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FIG4_LS0012	chr6:109735298|109738110:+	FIG4	FIG4 phosphoinositide 5-phosphatase	protein coding gene	no	.	2.796	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
RIPK1_LS002	chr6:3068661|3076764:+	RIPK1	receptor interacting serine/threonine kinase 1	protein coding gene	no	ENST00000259808.8	1.802	1.994	3.593	0.894(8567)	0.956(671)	0.885(15391)	non tumor-specific	exon_skip	yes
ZNF558_LS011	chr19:8825108|8830770:-	ZNF558	zinc finger protein 558	protein coding gene	no	ENST00000595786.5;ENST00000596172.1	0.424	0.353	3.668	0.753(7219)	0.818(574)	0.911(15836)	non tumor-specific	exon_skip	yes
UN_UBR2_LS0009	chr6:42592229|42603588:+	UBR2	ubiquitin protein ligase E3 component n-recognin 2	protein coding gene	no	.	0.965	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
RBBP7_LS016	chrX:16852875|16853682:-	RBBP7	RB binding protein 7, chromatin remodeling factor	protein coding gene	yes	ENST00000380087.6;ENST00000380084.8;ENST00000404022.5;ENST00000444437.5;ENST00000416035.1	185.741	153.051	110.068	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_UQCRC1_LS0008	chr3:48600151|48600680:-	UQCRC1	ubiquinol-cytochrome c reductase core protein 1	protein coding gene	no	.	88.890	15.824	0.000	0.007(68)	0.016(11)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_KCNJ18_LS0004	chr17:21700225|21702731:+	KCNJ18	potassium inwardly rectifying channel subfamily J member 18	protein coding gene	no	.	2.278	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
FERMT2_LS022	chr14:52881469|52881796:-	FERMT2	fermitin family member 2	protein coding gene	no	ENST00000554152.5;ENST00000635305.1	0.318	1.230	3.360	0.426(4082)	0.778(546)	0.712(12376)	non tumor-specific	alt_3prime;exon_skip	yes
PDE4D_LS037	chr5:59988717|60127584:-	PDE4D	phosphodiesterase 4D	protein coding gene	no	ENST00000515835.2	0.874	0.006	0.627	0.002(19)	0.001(1)	0.018(308)	non tumor-specific	exon_skip;mutex_exons	yes
TECPR2_LS007	chr14:102425291|102428250:+	TECPR2	tectonin beta-propeller repeat containing 2	protein coding gene	no	ENST00000359520.11;ENST00000558678.1	10.243	8.571	9.538	0.863(8267)	0.934(656)	0.973(16910)	non tumor-specific	nAS	yes
UN_LCN12_LS0014	chr9:136953260|136953390:-	LCN12	lipocalin 12	protein coding gene	no	.	3.014	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
AL445623.2_LS002	chr9:23509757|23511596:-	AL445623.2	-	lncRNA gene	no	ENST00000640307.1	3.001	0.000	0.857	0.001(10)	0(0)	0.037(648)	non tumor-specific	nAS	yes
MFSD8_LS036	chr4:127957590|127965072:-	MFSD8	major facilitator superfamily domain containing 8	protein coding gene	no	ENST00000515130.6;ENST00000642078.1;ENST00000513559.6;ENST00000641558.1	0.217	0.279	0.674	0.125(1194)	0.141(99)	0.201(3493)	non tumor-specific	alt_3prime	yes
UN_TRAF2_LS0046	chr9:136916615|136920238:+	TRAF2	TNF receptor associated factor 2	protein coding gene	no	.	6.708	0.227	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AL589666.1_LS0033	chr6:85612920|85614839:-	AL589666.1	-	protein coding gene	no	.	4.876	1.696	0.000	0.029(274)	0.026(18)	0(0)	non tumor-specific	nAS	no
CEACAM19_LS006	chr19:44667321|44671890:+	CEACAM19	CEA cell adhesion molecule 19	protein coding gene	no	.;.	2.422	1.969	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRKACB_LS0006	chr1:84078371|84175799:+	PRKACB	protein kinase cAMP-activated catalytic subunit beta	protein coding gene	no	.	1.797	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AL162586.1_LS005	chr9:127818711|127821195:+	AL162586.1	-	lncRNA gene	no	ENST00000439298.5	0.262	0.038	0.661	0.02(189)	0.026(18)	0.041(715)	non tumor-specific	nAS	yes
UN_AC245060.4_UP_LS0001	chr22:22298022|22298049:+	AC245060.4	-	pseudogene	no	.	0.411	0.219	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
ATP2B1_LS006	chr12:89599299|89603043:-	ATP2B1	ATPase plasma membrane Ca2+ transporting 1	protein coding gene	no	ENST00000550716.1	0.561	0.323	1.250	0.795(7618)	0.826(580)	0.621(10798)	non tumor-specific	exon_skip	yes
UN_AL451127.1_UP_LS0038	chr9:73435849|73439072:+	AL451127.1	-	lncRNA gene	no	.	5.713	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
FBN3_LS037	chr19:8109753|8110845:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	15.093	1.036	1.317	0.122(1169)	0.145(102)	0.224(3892)	non tumor-specific	exon_skip	yes
UN_UBR2_LS0032	chr6:42658320|42658635:+	UBR2	ubiquitin protein ligase E3 component n-recognin 2	protein coding gene	no	.	4.703	0.154	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SZRD1_LS0121	chr1:16397668|16397711:-	SZRD1	SUZ RNA binding domain containing 1	protein coding gene	no	.	6.576	0.684	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC079305.3_UP_LS0001	chr2:177222632|177226641:-	AC079305.3	-	lncRNA gene	no	.	1.883	0.143	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
ADAMTS19_LS004	chr5:129509242|129526284:+	ADAMTS19	ADAM metallopeptidase with thrombospondin type 1 motif 19	protein coding gene	no	ENST00000274487.8;ENST00000505791.5;ENST00000638972.1;ENST00000502709.1	2.966	0.724	0.928	0.063(601)	0.083(58)	0.177(3080)	non tumor-specific	exon_skip	yes
UN_AC138819.1_UP_LS0003	chr5:177609845|177612662:+	AC138819.1	-	lncRNA gene	no	.	11.651	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POM121L3P_UP_LS0010	chr20:23747901|23876119:+	POM121L3P	POM121 transmembrane nucleoporin like 3, pseudogene	pseudogene	no	.	2.859	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC131934.1_UP_LS0001	chr11:611692|639433:+	AC131934.1	-	lncRNA gene	no	.	5.110	0.062	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PPM1K_LS0038	chr4:88276777|88277143:-	PPM1K	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein coding gene	no	.	0.376	0.602	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AKAP11_LS005	chr13:42295742|42297048:+	AKAP11	A-kinase anchoring protein 11	protein coding gene	no	ENST00000025301.3	6.125	5.646	3.769	0.741(7100)	0.902(633)	0.88(15301)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RF00601_UP_LS0027	chr15:75154778|75155627:-	RF00601	-	small non-coding RNA gene	no	.	5.335	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
FAM92A_LS032	chr8:93727244|93728205:+	FAM92A	CBY1 interacting BAR domain containing 1	protein coding gene	no	ENST00000452913.6	0.010	0.007	0.721	0.183(1753)	0.179(126)	0.138(2391)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LGALS8_LS001	chr1:236518284|236518424:+	LGALS8	galectin 8	protein coding gene	no	ENST00000454943.6;ENST00000430527.6;ENST00000352231.6;ENST00000406509.7;ENST00000526589.5	0.450	0.044	0.663	0.034(324)	0.019(13)	0.014(241)	non tumor-specific	exon_skip	yes
SUGT1_LS004	chr13:52652958|52657532:+	SUGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein coding gene	no	.;.	2.695	0.489	0.000	0.035(339)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PRCC_LS0013	chr1:156755664|156766790:-	PRCC	proline rich mitotic checkpoint control factor	protein coding gene	no	.	1.472	0.395	0.000	0.009(83)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_RNA5SP76_UP_LS0002	chr1:219555477|219557564:+	RNA5SP76	RNA, 5S ribosomal pseudogene 76	no	no	.	5.646	0.165	0.000	0.01(98)	0.001(1)	0(0)	non tumor-specific	nAS	no
STK39_LS012	chr2:168129758|168138088:-	STK39	serine/threonine kinase 39	protein coding gene	no	ENST00000355999.4	63.125	38.264	25.534	0.978(9374)	0.952(668)	0.972(16900)	non tumor-specific	exon_skip	yes
UN_ARL6IP1_LS0019	chr16:18793257|18795472:+	ARL6IP1	ADP ribosylation factor like GTPase 6 interacting protein 1	protein coding gene	no	.	7.109	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HP1BP3_LS0062	chr1:20747655|20749767:-	HP1BP3	heterochromatin protein 1 binding protein 3	protein coding gene	no	.	2.672	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
MEGF8_LS009	chr19:42343631|42343954:+	MEGF8	multiple EGF like domains 8	protein coding gene	no	ENST00000334370.8;ENST00000378073.5;ENST00000251268.10	10.141	8.586	7.115	0.786(7535)	0.887(623)	0.94(16343)	non tumor-specific	alt_5prime	yes
PROM1_LS042	chr4:16076118|16083232:-	PROM1	prominin 1	protein coding gene	no	ENST00000508940.1	0.247	0.119	0.812	0.252(2412)	0.499(350)	0.091(1574)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MMP24OS_LS0010	chr20:35276314|35277721:-	MMP24OS	MMP24 opposite strand	protein coding gene	no	.	2.548	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_AC022182.1_LS0008	chr8:60920234|60920343:+	AC022182.1	-	lncRNA gene	no	.	1.833	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF516_LS0010	chr18:76371769|76378855:-	ZNF516	zinc finger protein 516	protein coding gene	no	.	2.271	0.002	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COL18A1_LS0053	chr21:45476480|45477416:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	22.887	12.543	0.000	0.004(34)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_ARMH3_LS0073	chr10:102040125|102054736:-	ARMH3	armadillo like helical domain containing 3	protein coding gene	no	.	1.319	0.307	0.000	0.009(87)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
AC092296.1_LS001	chr19:36378200|36378440:+	AC092296.1	-	lncRNA gene	no	ENST00000587018.1	0.172	0.519	0.888	0.047(450)	0.148(104)	0.016(278)	non tumor-specific	nAS	yes
UN_CISH_LS0017	chr3:50608593|50610800:-	CISH	cytokine inducible SH2 containing protein	protein coding gene	no	.	2.378	0.288	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
C5orf66_LS008	chr5:135174172|135215416:+	C5orf66	chromosome 5 open reading frame 66	lncRNA gene	no	ENST00000505828.5	0.301	0.007	0.767	0.015(147)	0.011(8)	0.085(1481)	non tumor-specific	nAS	yes
UN_PREX1_LS0033	chr20:48681335|48682510:-	PREX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein coding gene	no	.	2.857	0.437	0.000	0.019(186)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CDCA4_UP_LS0012	chr14:105058027|105065601:-	CDCA4	cell division cycle associated 4	protein coding gene	no	.	0.846	0.166	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC110285.2_UP_LS0004	chr17:81392889|81393064:-	AC110285.2	-	lncRNA gene	no	.	1.470	0.100	0.000	0.009(88)	0.003(2)	0(0)	non tumor-specific	nAS	no
GID8_LS001	chr20:62938253|62938600:+	GID8	GID complex subunit 8 homolog	protein coding gene	no	ENST00000497101.1	0.313	0.191	0.656	0.751(7199)	0.742(521)	0.072(1246)	non tumor-specific	alt_3prime;exon_skip	yes
UN_STIP1_LS0045	chr11:64204233|64204303:-	STIP1	stress induced phosphoprotein 1	protein coding gene	no	.	2.902	0.680	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
ROBO4_LS016	chr11:124896318|124896513:-	ROBO4	roundabout guidance receptor 4	protein coding gene	no	ENST00000306534.7;ENST00000533054.5;ENST00000532300.5;ENST00000526899.5;ENST00000527279.1	10.865	15.653	11.954	0.904(8663)	0.96(674)	0.924(16068)	non tumor-specific	alt_3prime	yes
LINC02021_LS001	chr3:130112744|130116837:+	LINC02021	long intergenic non-protein coding RNA 2021	lncRNA gene	no	ENST00000514145.5;ENST00000504808.2	0.678	0.293	0.730	0.136(1306)	0.261(183)	0.168(2921)	non tumor-specific	nAS	yes
ACSS1_LS010	chr20:25020147|25021389:-	ACSS1	acyl-CoA synthetase short chain family member 1	protein coding gene	no	ENST00000537502.5;ENST00000432802.6;ENST00000323482.8	49.251	43.823	35.422	0.956(9163)	0.986(692)	0.979(17012)	non tumor-specific	exon_skip	yes
CPEB2-DT_LS002	chr4:14977556|14985221:-	CPEB2-DT	CPEB2 divergent transcript	lncRNA gene	no	ENST00000501916.1	0.588	0.000	0.674	0(1)	0(0)	0.003(52)	non tumor-specific	nAS	yes
KDM4A_LS005	chr1:43653799|43655591:+	KDM4A	lysine demethylase 4A	protein coding gene	no	ENST00000485249.1	0.189	0.344	0.898	0.525(5027)	0.688(483)	0.394(6845)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM150A_LS015	chr2:85601107|85601435:-	TMEM150A	transmembrane protein 150A	protein coding gene	no	ENST00000306353.7;ENST00000334462.9;ENST00000409668.1;ENST00000425160.1	29.642	23.119	26.327	0.989(9478)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MRPS31P5_LS0013	chr13:52189914|52194259:-	MRPS31P5	mitochondrial ribosomal protein S31 pseudogene 5	pseudogene	no	.	1.551	0.458	0.000	0.009(85)	0.01(7)	0(0)	non tumor-specific	nAS	no
TMEM87A_LS024	chr15:42264203|42267947:-	TMEM87A	transmembrane protein 87A	protein coding gene	no	ENST00000448392.5;ENST00000389834.8;ENST00000562946.5;ENST00000569075.5;ENST00000568400.5;ENST00000563371.5;ENST00000561578.5;ENST00000566474.5;ENST00000307216.10;ENST00000568432.1	78.405	56.164	29.628	0.973(9321)	0.99(695)	0.978(17000)	non tumor-specific	nAS	yes
UTRN_LS061	chr6:144700243|144730357:+	UTRN	utrophin	protein coding gene	no	ENST00000367545.7;ENST00000367526.8	9.575	14.817	19.075	0.855(8192)	0.97(681)	0.973(16912)	non tumor-specific	alt_5prime	yes
UN_HDGF_LS0091	chr1:156742964|156743016:+	HDGF	heparin binding growth factor	protein coding gene	no	.	5.953	0.116	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
VPS51_LS005	chr11:65096652|65096998:+	VPS51	VPS51 subunit of GARP complex	protein coding gene	no	ENST00000526578.5	0.073	0.498	0.949	0.491(4708)	0.556(390)	0.512(8898)	non tumor-specific	exon_skip	yes
UN_AC104653.1_UP_LS0014	chr2:113875264|113881774:-	AC104653.1	ACTR3 antisense RNA 1	lncRNA gene	no	.	2.179	0.215	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CYP3A54P_UP_LS0017	chr7:4590898|4591569:-	CYP3A54P	cytochrome P450 family 3 subfamily A member 54, pseudogene	pseudogene	no	.	8.207	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
GAD1_LS014	chr2:170836883|170844045:+	GAD1	glutamate decarboxylase 1	protein coding gene	no	ENST00000625689.2;ENST00000358196.7;ENST00000493875.5	3.736	8.649	4.471	0.213(2036)	0.171(120)	0.326(5662)	non tumor-specific	exon_skip	yes
UN_AL359915.1_LS0013	chr1:119325149|119326963:-	AL359915.1	-	lncRNA gene	no	.	1.036	0.968	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
ADAMTSL5_LS007	chr19:1507405|1507545:-	ADAMTSL5	ADAMTS like 5	protein coding gene	no	ENST00000590090.1	0.629	0.311	1.126	0.304(2913)	0.271(190)	0.373(6491)	non tumor-specific	alt_3prime;alt_5prime	yes
AC068152.1_LS017	chr17:47072559|47099835:-	AC068152.1	-	lncRNA gene	no	ENST00000573341.5;ENST00000572864.5;ENST00000576938.1	1.739	1.526	2.899	0.791(7578)	0.85(597)	0.888(15429)	non tumor-specific	nAS	yes
UN_AL133373.1_UP_LS0010	chr14:91450053|91456686:+	AL133373.1	-	pseudogene	no	.	2.738	0.391	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	nAS	no
DCLRE1C_LS027	chr10:14945189|14953902:-	DCLRE1C	DNA cross-link repair 1C	protein coding gene	no	ENST00000378249.5	0.016	0.077	0.708	0.205(1960)	0.239(168)	0.229(3977)	non tumor-specific	exon_skip	yes
COX20_LS004	chr1:244835756|244841924:+	COX20	cytochrome c oxidase assembly factor COX20	protein coding gene	no	.;.	12.232	1.277	0.000	0.001(10)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HSD17B12_LS008	chr11:43750957|43798323:+	HSD17B12	hydroxysteroid 17-beta dehydrogenase 12	protein coding gene	no	.;.	6.675	3.362	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HIVEP3_LS0034	chr1:41841744|41846383:-	HIVEP3	HIVEP zinc finger 3	protein coding gene	yes	.	2.816	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WASH3P_LS0028	chr15:101973352|101973905:+	WASH3P	WASP family homolog 3, pseudogene	pseudogene	no	.	2.486	0.256	0.000	0.019(185)	0.019(13)	0(0)	non tumor-specific	nAS	no
TSPY2_LS004	chrY:6247673|6247775:+	TSPY2	testis specific protein Y-linked 2	protein coding gene	no	ENST00000429039.5;ENST00000320701.8;ENST00000383042.1	6.581	0.005	0.757	0.038(362)	0.004(3)	0.025(426)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MAN2C1_LS0018	chr15:75358344|75358507:-	MAN2C1	mannosidase alpha class 2C member 1	protein coding gene	no	.	5.260	1.531	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_ISLR_LS0049	chr15:74175380|74176291:-	ISLR	immunoglobulin superfamily containing leucine rich repeat	protein coding gene	no	.	3.138	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IPPK_LS0017	chr9:92618432|92631586:+	IPPK	inositol-pentakisphosphate 2-kinase	protein coding gene	no	.	1.197	0.146	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
LPA_LS005	chr6:160541181|160542688:-	LPA	lipoprotein(a)	protein coding gene	no	ENST00000316300.9	8.620	13.612	1.026	0.043(414)	0.103(72)	0.113(1957)	non tumor-specific	nAS	yes
SLC2A13_LS007	chr12:39871961|39951257:-	SLC2A13	solute carrier family 2 member 13	protein coding gene	no	ENST00000280871.8	5.965	7.714	3.778	0.637(6101)	0.789(554)	0.883(15349)	non tumor-specific	exon_skip	yes
ANKDD1A_LS021	chr15:64942565|64943484:+	ANKDD1A	ankyrin repeat and death domain containing 1A	protein coding gene	no	ENST00000319580.12;ENST00000395720.2;ENST00000395723.5;ENST00000620154.4;ENST00000611260.1	2.960	4.316	8.515	0.74(7091)	0.838(588)	0.939(16328)	non tumor-specific	alt_3prime;exon_skip	yes
ZFPM2-AS1_LS014	chr8:105927717|106060381:-	ZFPM2-AS1	ZFPM2 antisense RNA 1	lncRNA gene	no	ENST00000520433.5;ENST00000520594.5;ENST00000509144.2;ENST00000520078.5	2.042	0.267	0.942	0.424(4063)	0.265(186)	0.294(5115)	non tumor-specific	nAS	yes
IFT57_LS007	chr3:108167864|108191521:-	IFT57	intraflagellar transport 57	protein coding gene	no	ENST00000264538.3;ENST00000478157.1	115.803	103.438	67.772	0.994(9524)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
EPHA3_LS013	chr3:89431359|89449225:+	EPHA3	symbol withdrawn, see [HGNC:3387](/data/gene-symbol-report/#!/hgnc_id/HGNC:3387)	protein coding gene	yes	ENST00000336596.6;ENST00000494014.1	10.812	5.496	3.131	0.491(4701)	0.744(522)	0.733(12743)	non tumor-specific	nAS	yes
UN_PGLYRP2_LS0006	chr19:15472100|15472330:-	PGLYRP2	peptidoglycan recognition protein 2	protein coding gene	no	.	2.260	0.980	0.000	0.002(16)	0.016(11)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CSMD2_LS033	chr1:33602546|33605282:-	CSMD2	CUB and Sushi multiple domains 2	protein coding gene	no	ENST00000373381.8;ENST00000373388.6;ENST00000619121.4;ENST00000241312.8;ENST00000373380.5;ENST00000373377.1	2.702	0.654	1.298	0.11(1057)	0.013(9)	0.44(7649)	non tumor-specific	nAS	yes
UN_EMX2OS_LS0035	chr10:117490906|117492021:-	EMX2OS	EMX2 opposite strand/antisense RNA	lncRNA gene	no	.	4.150	5.135	0.000	0.006(61)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_PLGRKT_UP_LS0058	chr9:5606928|5628790:-	PLGRKT	plasminogen receptor with a C-terminal lysine	protein coding gene	no	.	1.592	0.201	0.000	0.006(58)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_WDR86-AS1_LS0023	chr7:151412884|151413272:+	WDR86-AS1	WDR86 antisense RNA 1	lncRNA gene	no	.	4.858	1.908	0.000	0.054(519)	0.068(48)	0(0)	non tumor-specific	nAS	no
UN_CAPN15_LS0041	chr16:541830|546817:+	CAPN15	calpain 15	protein coding gene	no	.	2.180	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_WDFY4_LS0041	chr10:48914232|48935177:-	WDFY4	WDFY family member 4	protein coding gene	no	.	0.443	0.285	0.000	0.045(435)	0.16(112)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RYR2_LS012	chr1:237423248|237441319:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	5.274	2.582	2.166	0.028(267)	0.12(84)	0.481(8360)	non tumor-specific	nAS	yes
AC008105.2_LS001	chr17:45245299|45247385:-	AC008105.2	-	pseudogene	no	ENST00000420431.2	0.416	0.143	0.651	0.161(1541)	0.144(101)	0.016(278)	non tumor-specific	nAS	yes
C15orf41_LS007	chr15:36594918|36645223:+	C15orf41	CDAN1 interacting nuclease 1	protein coding gene	no	ENST00000566807.5	0.008	0.005	1.232	0.242(2319)	0.264(185)	0.016(277)	non tumor-specific	nAS	yes
CNOT2_LS010	chr12:70278274|70285400:+	CNOT2	CCR4-NOT transcription complex subunit 2	protein coding gene	no	ENST00000553078.5;ENST00000550641.6;ENST00000547867.5;ENST00000553078.5;ENST00000550641.6;ENST00000547867.5	0.069	0.038	0.894	0.525(5032)	0.476(334)	0.407(7079)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ATP6V0D1_LS029	chr16:67457651|67480957:-	ATP6V0D1	ATPase H+ transporting V0 subunit d1	protein coding gene	no	ENST00000563064.5;ENST00000568298.1	0.035	0.046	0.918	0.311(2982)	0.407(286)	0.481(8355)	non tumor-specific	exon_skip	yes
SLC34A2_LS005	chr4:25655890|25662498:+	SLC34A2	solute carrier family 34 member 2	protein coding gene	no	ENST00000504570.5;ENST00000382051.7;ENST00000504570.5;ENST00000382051.7	22.087	35.951	2.174	0.439(4202)	0.705(495)	0.229(3977)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ATF7IP_LS0034	chr12:14475968|14478357:+	ATF7IP	activating transcription factor 7 interacting protein	protein coding gene	no	.	1.968	0.124	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_COG4_LS0040	chr16:70519731|70523234:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	.	3.046	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	alt_5prime	no
SEC61A1_LS001	chr3:128051910|128052835:+	SEC61A1	SEC61 translocon subunit alpha 1	protein coding gene	no	ENST00000464451.5	0.012	0.034	0.776	0.132(1264)	0.107(75)	0.342(5944)	non tumor-specific	nAS	yes
PPP1R32_LS014	chr11:61486610|61486948:+	PPP1R32	protein phosphatase 1 regulatory subunit 32	protein coding gene	no	ENST00000432063.6;ENST00000338608.6;ENST00000535545.5	1.600	1.538	8.248	0.601(5757)	0.647(454)	0.971(16883)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
DUSP13_LS006	chr10:75097885|75099429:-	DUSP13	dual specificity phosphatase 13	protein coding gene	no	ENST00000472493.6	0.030	0.001	0.643	0.043(408)	0.017(12)	0.026(448)	non tumor-specific	alt_5prime	yes
UN_SLC35A5_UP_LS0009	chr3:112409304|112518008:+	SLC35A5	solute carrier family 35 member A5	protein coding gene	no	.	6.357	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDCP1_LS0009	chr3:45082904|45083021:+	CDCP1	CUB domain containing protein 1	protein coding gene	yes	.	2.610	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DLX5_LS0003	chr7:97021065|97021687:-	DLX5	distal-less homeobox 5	protein coding gene	yes	.	4.326	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC018450.1_LS0010	chr3:143123576|143127646:+	AC018450.1	-	lncRNA gene	no	.	1.055	0.073	0.000	0.008(79)	0.001(1)	0(0)	non tumor-specific	nAS	no
CARS_LS033	chr11:3039931|3040448:-	CARS	cysteinyl-tRNA synthetase 1	protein coding gene	no	ENST00000527330.2	0.119	0.087	1.068	0.159(1526)	0.108(76)	0.458(7960)	non tumor-specific	exon_skip	yes
FGF7P1_LS001	chr18:14888897|14889988:-	FGF7P1	fibroblast growth factor 7 pseudogene 1	pseudogene	no	ENST00000582820.1	0.251	0.032	0.622	0.016(152)	0.017(12)	0.01(179)	non tumor-specific	nAS	yes
YWHAZ_LS019	chr8:100948900|100951929:-	YWHAZ	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta	protein coding gene	yes	ENST00000395957.6;ENST00000395958.5;ENST00000480304.5;ENST00000418997.1;ENST00000437293.5;ENST00000523131.1;ENST00000523938.1	69.398	50.441	171.608	0.994(9526)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ANAPC2_LS0011	chr9:137175837|137177049:-	ANAPC2	anaphase promoting complex subunit 2	protein coding gene	no	.	3.163	0.423	0.000	0.011(102)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
AC245297.3_LS006	chr1:149190795|149250565:+	AC245297.3	-	lncRNA gene	no	ENST00000611769.4	0.818	0.780	0.909	0.652(6243)	0.66(463)	0.405(7035)	non tumor-specific	nAS	yes
CSMD1_LS007	chr8:2954268|2955589:-	CSMD1	CUB and Sushi multiple domains 1	protein coding gene	yes	ENST00000537824.2;ENST00000400186.7;ENST00000602723.5;ENST00000635120.1;ENST00000520002.5;ENST00000602557.5	4.373	1.119	1.554	0.113(1084)	0.13(91)	0.247(4288)	non tumor-specific	exon_skip	yes
CNKSR2_LS019	chrX:21590620|21591022:+	CNKSR2	connector enhancer of kinase suppressor of Ras 2	protein coding gene	no	ENST00000642501.1;ENST00000642359.1;ENST00000645038.1;ENST00000425654.7;ENST00000543067.6;ENST00000643171.1;ENST00000279451.9;ENST00000645245.1;ENST00000644585.1;ENST00000645074.1;ENST00000379510.4;ENST00000645791.1;ENST00000644095.1;ENST00000485012.2;ENST00000647532.1;ENST00000647423.1;ENST00000646697.1;ENST00000643313.1;ENST00000644075.1;ENST00000647349.1;ENST00000643156.1;ENST00000642853.1	2.313	5.390	2.424	0.267(2554)	0.368(258)	0.704(12239)	non tumor-specific	nAS	yes
DEPTOR_LS008	chr8:119969840|120001525:+	DEPTOR	DEP domain containing MTOR interacting protein	protein coding gene	no	ENST00000518057.1	0.167	0.134	0.668	0.243(2325)	0.323(227)	0.01(172)	non tumor-specific	nAS	yes
GAD1_LS008	chr2:170822149|170829475:+	GAD1	glutamate decarboxylase 1	protein coding gene	no	ENST00000454603.5;ENST00000625689.2;ENST00000358196.7;ENST00000375272.5;ENST00000344257.9;ENST00000414527.6;ENST00000455008.5;ENST00000456864.5;ENST00000493875.5;ENST00000429023.1;ENST00000485013.1;ENST00000486850.1	3.391	4.207	2.728	0.691(6624)	0.423(297)	0.447(7768)	non tumor-specific	nAS	yes
UN_PTPRC_LS0001	chr1:198639137|198639229:+	PTPRC	protein tyrosine phosphatase receptor type C	protein coding gene	yes	.	0.632	1.187	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
MROH8_LS020	chr20:37147909|37157860:-	MROH8	maestro heat like repeat family member 8	protein coding gene	no	ENST00000417458.5;ENST00000421643.1	1.040	0.631	1.980	0.382(3656)	0.605(425)	0.817(14195)	non tumor-specific	exon_skip	yes
ADGRF1_LS008	chr6:47012195|47014681:-	ADGRF1	adhesion G protein-coupled receptor F1	protein coding gene	yes	ENST00000371253.6;ENST00000449332.6;ENST00000283297.5;ENST00000475745.5	11.595	14.909	4.154	0.407(3896)	0.687(482)	0.172(2993)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ABCB11_LS028	chr2:169016799|169018050:-	ABCB11	ATP binding cassette subfamily B member 11	protein coding gene	no	ENST00000263817.7;ENST00000650372.1	2.677	1.338	0.815	0.022(210)	0.077(54)	0.041(717)	non tumor-specific	alt_5prime	yes
PPARG_LS014	chr3:12312453|12344807:+	PPARG	peroxisome proliferator activated receptor gamma	protein coding gene	yes	ENST00000643888.1	1.200	0.332	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
UN_WASH2P_UP_LS0006	chr2:113583928|113588550:+	WASH2P	WASP family homolog 2, pseudogene	pseudogene	no	.	1.597	0.298	0.000	0.017(166)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC005324.4_LS014	chr17:15717313|15734930:+	AC005324.4	-	protein coding gene	no	ENST00000412988.6;ENST00000413242.6	0.221	0.002	1.067	0.005(48)	0.001(1)	0.18(3134)	non tumor-specific	exon_skip	yes
UN_PPP2R2C_LS0011	chr4:6342954|6347846:-	PPP2R2C	protein phosphatase 2 regulatory subunit Bgamma	protein coding gene	yes	.	1.817	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
RIMS1_LS031	chr6:72266049|72274349:+	RIMS1	regulating synaptic membrane exocytosis 1	protein coding gene	no	ENST00000518273.5;ENST00000521978.5	0.467	0.003	1.851	0.013(121)	0.004(3)	0.109(1898)	non tumor-specific	exon_skip	yes
UN_PLK1_LS0004	chr16:23684007|23687487:-	PLK1	polo like kinase 1	protein coding gene	yes	.	2.446	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AL049830.3_LS004	chr14:30886326|30889120:-	AL049830.3	-	lncRNA gene	no	ENST00000468444.2	0.889	0.039	0.640	0.006(56)	0.003(2)	0.006(103)	non tumor-specific	nAS	yes
UN_AC139491.7_LS0014	chr5:176124125|176124263:+	AC139491.7	-	protein coding gene	no	.	3.003	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_EEF1A1_LS0151	chr6:73518192|73518359:+	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	protein coding gene	yes	.	4.272	0.386	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL118506.1_LS0003	chr20:63862951|63864078:-	AL118506.1	-	lncRNA gene	no	.	1.898	0.393	0.000	0.041(392)	0.019(13)	0(0)	non tumor-specific	nAS	no
LIMD1_LS008	chr3:45668356|45672690:+	LIMD1	LIM domains containing 1	protein coding gene	yes	ENST00000465039.5;ENST00000440097.5;ENST00000273317.4;ENST00000474665.1	17.822	13.822	11.821	0.939(9001)	0.983(690)	0.957(16634)	non tumor-specific	nAS	yes
UN_PLEKHS1_LS0080	chr10:113781323|113781383:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	3.891	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
PROM1_LS041	chr4:16076118|16082105:-	PROM1	prominin 1	protein coding gene	no	ENST00000502501.1;ENST00000502501.1	0.322	0.134	0.779	0.05(480)	0.115(81)	0.036(619)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AP1M1_LS008	chr19:16203615|16206341:+	AP1M1	adaptor related protein complex 1 subunit mu 1	protein coding gene	no	ENST00000291439.7;ENST00000590263.5;ENST00000429941.6;ENST00000589991.1;ENST00000444449.6;ENST00000589822.5;ENST00000590945.5;ENST00000591775.5;ENST00000586957.1;ENST00000589782.2	69.493	40.371	55.902	0.993(9516)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_CEP131_LS0010	chr17:81194969|81195835:-	CEP131	centrosomal protein 131	protein coding gene	no	.	8.884	0.916	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
LAS1L_LS003	chrX:65518465|65520702:-	LAS1L	LAS1 like ribosome biogenesis factor	protein coding gene	no	ENST00000484069.1	0.860	0.874	7.643	0.511(4894)	0.484(340)	0.936(16267)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
VASH1_LS005	chr14:76773211|76773661:+	VASH1	vasohibin 1	protein coding gene	no	ENST00000553518.1	0.285	0.120	0.787	0.202(1938)	0.128(90)	0.162(2811)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ATP5F1D_LS0011	chr19:1241978|1242596:-	ATP5F1D	ATP synthase F1 subunit delta	protein coding gene	no	.	3.112	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL14P1_LS0045	chr12:62965892|62965941:-	RPL14P1	ribosomal protein L14 pseudogene 1	pseudogene	no	.	7.828	0.622	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
YIPF7_LS005	chr4:44629548|44649985:-	YIPF7	Yip1 domain family member 7	protein coding gene	no	ENST00000502794.1	0.194	0.006	0.615	0.001(5)	0.003(2)	0.01(175)	non tumor-specific	exon_skip	yes
UN_VPS53_LS0099	chr17:514401|514448:+	VPS53	VPS53 subunit of GARP complex	protein coding gene	yes	.	2.052	0.041	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
RASGEF1A_LS005	chr10:43199012|43199092:-	RASGEF1A	RasGEF domain family member 1A	protein coding gene	no	ENST00000374459.5;ENST00000395810.5;ENST00000395809.5	10.802	7.102	3.857	0.664(6363)	0.678(476)	0.875(15201)	non tumor-specific	nAS	yes
UN_GLIPR2_LS0033	chr9:36163321|36163366:-	GLIPR2	GLI pathogenesis related 2	protein coding gene	no	.	1.478	0.651	0.000	0.02(191)	0.056(39)	0(0)	non tumor-specific	nAS	no
UN_JAK2_LS0018	chr9:5021298|5021963:+	JAK2	Janus kinase 2	protein coding gene	yes	.	0.944	0.005	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
ST3GAL3_LS046	chr1:43899263|43930132:+	ST3GAL3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein coding gene	no	ENST00000489897.6;ENST00000372367.5;ENST00000528371.5;ENST00000647503.1;ENST00000489897.6;ENST00000372367.5;ENST00000528371.5;ENST00000647503.1	0.137	0.024	1.088	0.432(4137)	0.489(343)	0.445(7735)	non tumor-specific	alt_5prime;exon_skip	yes
DTNB_LS025	chr2:25482873|25497298:-	DTNB	dystrobrevin beta	protein coding gene	no	ENST00000489756.1	0.045	0.162	1.759	0.093(894)	0.066(46)	0.09(1560)	non tumor-specific	alt_5prime	yes
PRH1_LS017	chr12:11121180|11171422:-	PRH1	proline rich protein HaeIII subfamily 1	protein coding gene	no	ENST00000546265.1;ENST00000541175.1	0.287	0.102	2.001	0.644(6168)	0.655(460)	0.711(12363)	non tumor-specific	nAS	yes
UN_CEBPD_LS0037	chr8:47737339|47737383:+	CEBPD	CCAAT enhancer binding protein delta	protein coding gene	yes	.	6.569	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC008663.2_LS001	chr5:173579682|173580229:+	AC008663.2	-	lncRNA gene	no	ENST00000517299.1;ENST00000519897.1	0.148	0.017	0.757	0.033(315)	0.066(46)	0.055(953)	non tumor-specific	nAS	yes
GNAT3_LS004	chr7:80474379|80478841:-	GNAT3	G protein subunit alpha transducin 3	protein coding gene	no	ENST00000398291.3	7.162	0.155	0.751	0.015(142)	0.003(2)	0.034(590)	non tumor-specific	nAS	yes
TTLL2_LS003	chr6:167338803|167340105:+	TTLL2	tubulin tyrosine ligase like 2	protein coding gene	no	ENST00000239587.9;ENST00000515138.1	7.410	0.000	0.743	0.001(7)	0(0)	0.008(131)	non tumor-specific	nAS	yes
ATP10B_LS027	chr5:160688094|160785559:-	ATP10B	ATPase phospholipid transporting 10B (putative)	protein coding gene	no	ENST00000521033.5	0.108	0.106	0.721	0.02(196)	0.01(7)	0.027(465)	non tumor-specific	alt_5prime;exon_skip	yes
TLN1_LS041	chr9:35714373|35714574:-	TLN1	talin 1	protein coding gene	no	ENST00000314888.9	97.201	82.815	84.639	0.966(9256)	0.99(695)	0.979(17021)	non tumor-specific	exon_skip	yes
PDE8A_LS030	chr15:85117839|85120797:+	PDE8A	phosphodiesterase 8A	protein coding gene	no	ENST00000310298.8;ENST00000557957.5;ENST00000394553.5;ENST00000478717.5;ENST00000485596.5;ENST00000559742.5;ENST00000339708.9;ENST00000560789.5;ENST00000310298.8;ENST00000557957.5;ENST00000394553.5;ENST00000478717.5;ENST00000485596.5;ENST00000559742.5;ENST00000339708.9;ENST00000560789.5	24.502	24.244	23.772	0.97(9289)	0.994(698)	0.976(16962)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MBD3L3_UP_LS0006	chr19:7089451|7092295:-	MBD3L3	methyl-CpG binding domain protein 3 like 3	protein coding gene	no	.	2.303	0.441	0.000	0.032(311)	0.023(16)	0(0)	non tumor-specific	nAS	no
SCYL3_LS006	chr1:169854964|169859041:-	SCYL3	SCY1 like pseudokinase 3	protein coding gene	no	ENST00000367771.10;ENST00000423670.1;ENST00000367771.10;ENST00000423670.1;ENST00000367771.10;ENST00000423670.1	14.923	10.318	9.927	0.963(9225)	0.991(696)	0.975(16956)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PAPLN_LS031	chr14:73261294|73262398:+	PAPLN	papilin, proteoglycan like sulfated glycoprotein	protein coding gene	no	ENST00000555445.5	0.156	0.187	0.679	0.238(2283)	0.326(229)	0.047(810)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
SMARCA4_LS035	chr19:11018331|11018957:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000586122.5	0.028	0.012	0.641	0.114(1088)	0.167(117)	0.027(471)	non tumor-specific	nAS	yes
PPIL2_LS025	chr22:21686998|21687643:+	PPIL2	peptidylprolyl isomerase like 2	protein coding gene	no	ENST00000335025.12;ENST00000398831.7;ENST00000626352.2;ENST00000417788.5;ENST00000406385.1;ENST00000446951.1	35.612	22.148	34.753	0.989(9478)	0.996(699)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM9B_LS002	chr11:8953337|8956190:-	TMEM9B	TMEM9 domain family member B	protein coding gene	no	ENST00000309134.9;ENST00000534025.5;ENST00000525069.5;ENST00000528117.5;ENST00000530136.1	125.760	100.636	66.139	0.996(9541)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
P3H3_LS026	chr12:6839140|6839297:+	P3H3	prolyl 3-hydroxylase 3	protein coding gene	no	ENST00000290510.9;ENST00000536140.5;ENST00000612048.4	74.644	39.428	50.482	0.928(8894)	0.967(679)	0.967(16805)	non tumor-specific	alt_3prime	yes
ASXL2_LS010	chr2:25771540|25799385:-	ASXL2	ASXL transcriptional regulator 2	protein coding gene	no	ENST00000435504.8;ENST00000336112.8;ENST00000497092.1	12.541	8.496	3.873	0.774(7413)	0.89(625)	0.899(15632)	non tumor-specific	exon_skip	yes
UN_SLC20A1_UP_LS0006	chr2:112634197|112637463:+	SLC20A1	solute carrier family 20 member 1	protein coding gene	no	.	2.070	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SDF4_LS0106	chr1:1228742|1228820:+	SDF4	stromal cell derived factor 4	protein coding gene	no	.	2.123	0.743	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
NOP53_LS012	chr19:47754757|47755784:+	NOP53	NOP53 ribosome biogenesis factor	protein coding gene	no	ENST00000595143.5	1.079	0.574	0.730	0.354(3392)	0.34(239)	0.269(4678)	non tumor-specific	nAS	yes
UN_FGF20_LS0007	chr8:16995758|17001547:-	FGF20	fibroblast growth factor 20	protein coding gene	no	.	1.488	0.043	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MLF2_LS0086	chr12:6748854|6748895:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	4.053	0.293	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
MLH3_LS025	chr14:75049718|75050852:-	MLH3	mutL homolog 3	protein coding gene	yes	ENST00000557648.1	0.208	0.027	0.637	0.006(54)	0.009(6)	0.062(1078)	non tumor-specific	exon_skip;intron_retention	yes
USP32_LS018	chr17:60213662|60214620:-	USP32	ubiquitin specific peptidase 32	protein coding gene	no	ENST00000300896.8;ENST00000592339.5;ENST00000590133.5;ENST00000591768.1	10.030	6.795	6.233	0.88(8430)	0.969(680)	0.962(16715)	non tumor-specific	nAS	yes
CDIP1_LS016	chr16:4513851|4514631:-	CDIP1	cell death inducing p53 target 1	protein coding gene	no	ENST00000588381.1	0.245	0.171	0.733	0.654(6265)	0.835(586)	0.192(3330)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	yes
UN_SUSD6_LS0008	chr14:69658127|69658513:+	SUSD6	sushi domain containing 6	protein coding gene	no	.	1.052	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
AC015971.1_LS002	chr2:86562778|86617176:+	AC015971.1	-	lncRNA gene	no	ENST00000439077.1	3.148	0.000	0.685	0.002(15)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_LINC01146_LS0006	chr14:88025481|88044686:+	LINC01146	long intergenic non-protein coding RNA 1146	lncRNA gene	no	.	1.557	1.095	0.000	0.011(110)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_IGLC2_UP_LS0134	chr22:22881387|22899617:+	IGLC2	immunoglobulin lambda constant 2	no	no	.	1516.570	69.956	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
SFXN5_LS016	chr2:72988348|72994846:-	SFXN5	sideroflexin 5	protein coding gene	no	ENST00000482542.5	0.008	0.000	0.729	0.003(27)	0(0)	0.011(193)	non tumor-specific	nAS	yes
UN_CROCC_LS0118	chr1:16948926|16954223:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	2.712	0.010	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SGK3_LS019	chr8:66822459|66828654:+	SGK3	serum/glucocorticoid regulated kinase family member 3	protein coding gene	no	ENST00000519289.1;ENST00000521198.6;ENST00000396596.2;ENST00000521960.5;ENST00000522398.5;ENST00000520976.5;ENST00000345714.8;ENST00000519396.5	6.509	5.930	6.626	0.873(8366)	0.959(673)	0.957(16637)	non tumor-specific	nAS	yes
CPSF4_LS012	chr7:99450795|99452368:+	CPSF4	cleavage and polyadenylation specific factor 4	protein coding gene	no	ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000471455.1;ENST00000440514.1;ENST00000482251.2;ENST00000465132.1	40.598	18.396	30.155	0.996(9542)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TRPC5OS_LS002	chrX:111876273|111895951:+	TRPC5OS	TRPC5 opposite strand	protein coding gene	no	ENST00000635763.1	1.726	0.000	0.662	0.001(10)	0(0)	0.001(17)	non tumor-specific	nAS	yes
MAGI2-AS3_LS001	chr7:79453191|79453587:+	MAGI2-AS3	MAGI2 antisense RNA 3	lncRNA gene	no	ENST00000446159.5	0.265	0.131	0.888	0.191(1833)	0.353(248)	0.376(6544)	non tumor-specific	nAS	yes
ALG10_LS003	chr12:34024159|34025863:+	ALG10	ALG10 alpha-1,2-glucosyltransferase	protein coding gene	no	ENST00000266483.6;ENST00000541178.1;ENST00000541875.1	5.574	2.619	1.823	0.861(8254)	0.897(630)	0.798(13879)	non tumor-specific	nAS	yes
TJP2_LS035	chr9:69248224|69252815:+	TJP2	tight junction protein 2	protein coding gene	no	ENST00000453658.6;ENST00000348208.9;ENST00000649114.1;ENST00000649134.1;ENST00000498204.2	2.589	1.847	6.332	0.787(7540)	0.936(657)	0.937(16280)	non tumor-specific	exon_skip	yes
TEX30_LS002	chr13:102766580|102768260:-	TEX30	testis expressed 30	protein coding gene	no	ENST00000376027.5;ENST00000376022.5;ENST00000376029.3	4.696	1.543	2.216	0.866(8295)	0.875(614)	0.82(14252)	non tumor-specific	exon_skip	yes
UN_ZMYND19_LS0011	chr9:137587561|137587717:-	ZMYND19	zinc finger MYND-type containing 19	protein coding gene	no	.	8.615	0.316	0.000	0.007(71)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
KCNIP2_LS023	chr10:101829199|101829844:-	KCNIP2	potassium voltage-gated channel interacting protein 2	protein coding gene	no	ENST00000355657.6;ENST00000356640.6;ENST00000461105.5	1.167	3.122	3.448	0.057(547)	0.141(99)	0.417(7250)	non tumor-specific	alt_3prime;exon_skip	yes
ANGPTL2_LS001	chr9:127089138|127091670:-	ANGPTL2	angiopoietin like 2	protein coding gene	no	ENST00000373425.7;ENST00000373417.1	60.663	45.046	39.658	0.976(9349)	0.997(700)	0.945(16430)	non tumor-specific	nAS	yes
SULT2A1_LS001	chr19:47871567|47874657:-	SULT2A1	sulfotransferase family 2A member 1	protein coding gene	no	ENST00000222002.3	95.060	83.784	1.069	0.096(918)	0.137(96)	0.22(3831)	non tumor-specific	exon_skip	yes
UN_RNU6-46P_UP_LS0004	chr11:67884478|67888153:+	RNU6-46P	RNA, U6 small nuclear 46, pseudogene	small non-coding RNA gene	no	.	2.301	0.917	0.000	0.038(362)	0.036(25)	0(0)	non tumor-specific	nAS	no
UN_ASIC2_LS0004	chr17:33021310|33021841:-	ASIC2	acid sensing ion channel subunit 2	protein coding gene	no	.	1.684	0.674	0.000	0.001(11)	0.006(4)	0(0)	non tumor-specific	nAS	no
CORO1C_LS006	chr12:108649020|108652272:-	CORO1C	coronin 1C	protein coding gene	no	ENST00000261401.7;ENST00000420959.6;ENST00000541050.5;ENST00000546705.5;ENST00000421578.6;ENST00000550542.5;ENST00000549772.5;ENST00000552030.5	77.646	48.664	54.089	0.992(9509)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PGRMC1_LS003	chrX:119236691|119240309:+	PGRMC1	progesterone receptor membrane component 1	protein coding gene	no	ENST00000217971.7;ENST00000217971.7	163.167	144.703	93.631	0.953(9134)	0.972(682)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
LEPR_LS007	chr1:65592865|65596448:+	LEPR	leptin receptor	protein coding gene	no	ENST00000371059.7;ENST00000371060.7;ENST00000349533.10;ENST00000462765.5;ENST00000344610.12;ENST00000616738.4;ENST00000371058.1	3.569	8.767	5.214	0.653(6254)	0.946(664)	0.873(15174)	non tumor-specific	alt_3prime	yes
ALDH7A1_LS039	chr5:126584012|126595007:-	ALDH7A1	aldehyde dehydrogenase 7 family member A1	protein coding gene	no	ENST00000636743.1	0.027	0.021	0.714	0.241(2309)	0.322(226)	0.129(2248)	non tumor-specific	exon_skip	yes
NBPF19_LS065	chr1:149531742|149535554:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000612881.4	0.051	0.041	0.497	0.189(1815)	0.211(148)	0(4)	non tumor-specific	nAS	yes
SOD2_LS006	chr6:159679298|159692661:-	SOD2	superoxide dismutase 2	protein coding gene	yes	.;.	48.692	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PTAFR_UP_LS0002	chr1:28229023|28234367:-	PTAFR	platelet activating factor receptor	protein coding gene	no	.	7.929	3.171	0.000	0.003(31)	0.036(25)	0(0)	non tumor-specific	exon_skip	no
PAPOLA_LS028	chr14:96542296|96542774:+	PAPOLA	poly(A) polymerase alpha	protein coding gene	no	ENST00000216277.12;ENST00000553689.5;ENST00000392990.6;ENST00000555626.5;ENST00000554666.5;ENST00000556787.5	63.723	40.000	35.464	0.981(9399)	0.99(695)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ELMSAN1_LS005	chr14:73725360|73726033:-	ELMSAN1	mitotic deacetylase associated SANT domain protein	protein coding gene	no	ENST00000394071.6;ENST00000476562.5;ENST00000286523.9;ENST00000423556.6;ENST00000451078.5;ENST00000435371.1;ENST00000462716.1	12.836	11.717	17.624	0.933(8936)	0.974(684)	0.972(16899)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CROCC_LS0113	chr1:16948524|16950953:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	1.475	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC084816.1_LS025	chr12:23057297|23057780:+	AC084816.1	-	lncRNA gene	no	ENST00000540895.5;ENST00000625240.1	4.390	0.118	0.880	0.03(287)	0.004(3)	0.092(1599)	non tumor-specific	nAS	yes
UN_AC243960.5_UP_LS0029	chr19:41688112|41709678:-	AC243960.5	-	pseudogene	no	.	4.592	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_H1FX_LS0023	chr3:129314966|129315879:+	H1FX	H1.10 linker histone	protein coding gene	no	.	2.197	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SIRT3_LS044	chr11:233534|236194:-	SIRT3	sirtuin 3	protein coding gene	yes	ENST00000532837.5;ENST00000529055.5;ENST00000530067.1;ENST00000532837.5;ENST00000529055.5;ENST00000530067.1	2.769	2.187	3.992	0.869(8329)	0.939(659)	0.945(16431)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_BTBD16_LS0018	chr10:122299134|122306848:+	BTBD16	BTB domain containing 16	protein coding gene	no	.	2.831	0.800	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
TNFRSF1B_LS016	chr1:12202171|12206740:+	TNFRSF1B	TNF receptor superfamily member 1B	protein coding gene	yes	ENST00000376259.6;ENST00000492361.1;ENST00000376259.6;ENST00000492361.1;ENST00000376259.6;ENST00000492361.1	36.587	27.349	20.954	0.97(9298)	0.974(684)	0.977(16988)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TAL1_LS0015	chr1:47229351|47230239:-	TAL1	TAL bHLH transcription factor 1, erythroid differentiation factor	protein coding gene	yes	.	0.927	0.327	0.000	0.011(110)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_ZBTB20_LS0111	chr3:115077171|115100175:-	ZBTB20	zinc finger and BTB domain containing 20	protein coding gene	no	.	1.412	0.371	0.000	0.005(46)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_IGKV1D-27_UP_LS0006	chr2:89937450|89960520:+	IGKV1D-27	immunoglobulin kappa variable 1D-27 (pseudogene)	no	no	.	36.482	28.396	0.000	0.065(627)	0.091(64)	0(0)	non tumor-specific	nAS	no
SLC22A2_LS001	chr6:160171437|160224705:-	SLC22A2	solute carrier family 22 member 2	protein coding gene	no	ENST00000486916.5	1.073	0.713	0.689	0.078(750)	0.185(130)	0.027(474)	non tumor-specific	nAS	yes
B3GLCT_LS015	chr13:31286819|31317566:+	B3GLCT	beta 3-glucosyltransferase	protein coding gene	no	ENST00000343307.4	14.538	9.236	5.181	0.943(9035)	0.974(684)	0.931(16184)	non tumor-specific	exon_skip	yes
UN_PRPF19P1_UP_LS0005	chr18:66124428|66153411:-	PRPF19P1	PRPF19 pseudogene 1	pseudogene	no	.	3.008	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
QARS_LS006	chr3:49096079|49098192:-	QARS	glutaminyl-tRNA synthetase 1	protein coding gene	no	ENST00000453392.5;ENST00000497635.5;ENST00000453392.5;ENST00000497635.5	0.085	0.086	2.314	0.898(8599)	0.902(633)	0.796(13840)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_SPIDR_LS0004	chr8:47273450|47279862:+	SPIDR	scaffold protein involved in DNA repair	protein coding gene	no	.	0.869	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MYO19_LS078	chr17:36542165|36543126:-	MYO19	myosin XIX	protein coding gene	no	ENST00000610496.1	0.451	0.006	0.711	0.01(96)	0.004(3)	0.017(302)	non tumor-specific	nAS	yes
NYAP1_LS002	chr7:100485379|100486821:+	NYAP1	neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1	protein coding gene	no	ENST00000300179.6	2.168	1.822	2.113	0.176(1686)	0.161(113)	0.653(11342)	non tumor-specific	nAS	yes
AC093895.1_LS004	chr4:87683304|87730363:-	AC093895.1	-	lncRNA gene	no	ENST00000503993.1	2.845	0.311	0.704	0.054(519)	0.009(6)	0.045(776)	non tumor-specific	nAS	yes
UN_DDA1_LS0014	chr19:17319677|17319747:-	DDA1	DET1 and DDB1 associated 1	protein coding gene	no	.	3.427	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EMP1_LS0034	chr12:13214761|13214813:+	EMP1	epithelial membrane protein 1	protein coding gene	yes	.	38.463	30.259	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	nAS	no
DUS2_LS017	chr16:68025494|68038006:+	DUS2	dihydrouridine synthase 2	protein coding gene	no	ENST00000571081.6;ENST00000566306.5;ENST00000565263.5;ENST00000564975.5;ENST00000568099.6;ENST00000567100.5;ENST00000432752.5;ENST00000564781.1	4.401	2.627	4.443	0.95(9102)	0.969(680)	0.95(16511)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL138900.2_UP_LS0014	chr1:157439564|157442045:-	AL138900.2	-	lncRNA gene	no	.	2.213	0.259	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	nAS	no
PAXX_LS008	chr9:136992700|136993053:+	PAXX	PAXX non-homologous end joining factor	protein coding gene	no	.;.;.	7.874	1.242	0.000	0.024(234)	0.02(14)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RANBP3_LS042	chr19:5957973|5965733:-	RANBP3	RAN binding protein 3	protein coding gene	no	ENST00000591333.5	0.118	0.110	0.660	0.081(772)	0.093(65)	0.097(1690)	non tumor-specific	exon_skip;mutex_exons	yes
BACH2_LS003	chr6:89951862|90008602:-	BACH2	BTB domain and CNC homolog 2	protein coding gene	no	ENST00000257749.8;ENST00000537989.5;ENST00000343122.7	1.945	0.935	1.317	0.291(2785)	0.487(342)	0.593(10307)	non tumor-specific	nAS	yes
IL12RB1_LS020	chr19:18086932|18090650:-	IL12RB1	interleukin 12 receptor subunit beta 1	protein coding gene	no	ENST00000598019.6;ENST00000594176.1	0.194	0.814	0.956	0.013(123)	0.017(12)	0.045(777)	non tumor-specific	alt_3prime;exon_skip	yes
AC107973.1_LS001	chr11:29714140|29804491:+	AC107973.1	-	lncRNA gene	no	ENST00000530249.1	26.744	0.000	0.782	0.001(5)	0(0)	0(5)	non tumor-specific	nAS	yes
AL157832.3_LS005	chr10:129802891|129805341:+	AL157832.3	-	lncRNA gene	no	ENST00000635764.1	2.756	0.248	0.867	0.011(106)	0.006(4)	0.317(5507)	non tumor-specific	nAS	yes
SMAD5_LS016	chr5:136174632|136177337:+	SMAD5	SMAD family member 5	protein coding gene	no	ENST00000545279.5;ENST00000545620.5;ENST00000514777.1;ENST00000509297.6	26.353	18.611	15.451	0.973(9321)	0.98(688)	0.971(16882)	non tumor-specific	nAS	yes
UN_SNX18P7_UP_LS0004	chr9:33573287|33574840:+	SNX18P7	sorting nexin 18 pseudogene 7	pseudogene	no	.	3.334	0.291	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	nAS	no
B4GALT2_LS013	chr1:43981473|43981733:+	B4GALT2	beta-1,4-galactosyltransferase 2	protein coding gene	no	ENST00000434555.6;ENST00000434555.6	1.356	1.599	1.191	0.758(7258)	0.756(531)	0.643(11172)	non tumor-specific	alt_3prime;alt_5prime	yes
LINC00466_LS004	chr1:63162682|63164244:-	LINC00466	long intergenic non-protein coding RNA 466	lncRNA gene	no	ENST00000447183.3	3.554	0.000	0.696	0(1)	0(0)	0.012(217)	non tumor-specific	nAS	yes
UN_LINC02074_LS0009	chr17:74121684|74131562:-	LINC02074	long intergenic non-protein coding RNA 2074	lncRNA gene	no	.	6.324	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
FAM30C_LS001	chr15:21019553|21020412:+	FAM30C	family with sequence similarity 30 member C	pseudogene	no	ENST00000561158.1	0.093	0.105	0.548	0.012(113)	0.007(5)	0.002(38)	non tumor-specific	nAS	yes
KLF3-AS1_LS008	chr4:38630581|38635956:-	KLF3-AS1	KLF3 antisense RNA 1	lncRNA gene	no	ENST00000440181.5;ENST00000620339.4;ENST00000507091.5;ENST00000610668.4;ENST00000436901.2	1.458	1.095	4.528	0.552(5285)	0.741(520)	0.886(15399)	non tumor-specific	nAS	yes
UN_LENG8_LS0156	chr19:54461338|54461367:-	LENG8	leukocyte receptor cluster member 8	protein coding gene	no	.	5.874	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
IQGAP3_LS019	chr1:156540916|156543981:-	IQGAP3	IQ motif containing GTPase activating protein 3	protein coding gene	no	ENST00000361170.6;ENST00000491900.1	12.757	1.957	1.796	0.77(7378)	0.251(176)	0.497(8636)	non tumor-specific	alt_3prime	yes
FNBP1L_LS012	chr1:93536490|93541042:+	FNBP1L	formin binding protein 1 like	protein coding gene	no	ENST00000271234.11;ENST00000604705.5;ENST00000424449.2	5.944	0.542	2.534	0.016(156)	0.009(6)	0.096(1661)	non tumor-specific	exon_skip	yes
UN_MIPEP_LS0039	chr13:23856379|23858370:+	MIPEP	mitochondrial intermediate peptidase	protein coding gene	no	.	2.242	0.376	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
RBMS1_LS013	chr2:160285044|160286969:-	RBMS1	RNA binding motif single stranded interacting protein 1	protein coding gene	no	ENST00000474820.5;ENST00000348849.7;ENST00000392753.7;ENST00000491781.5	27.962	20.243	28.968	0.927(8877)	0.98(688)	0.973(16910)	non tumor-specific	alt_5prime	yes
UN_AP002982.1_UP_LS0008	chr8:97774262|97775026:-	AP002982.1	-	pseudogene	no	.	1.088	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TAGLN2_LS0180	chr1:159918669|159920371:+	TAGLN2	transgelin 2	protein coding gene	no	.	7.475	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HNRNPU_LS018	chr1:244854503|244855424:-	HNRNPU	heterogeneous nuclear ribonucleoprotein U	protein coding gene	no	ENST00000639824.1;ENST00000639824.1	7.530	0.000	0.949	0(1)	0(0)	0.556(9671)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
IRF9_LS001	chr14:24161338|24162144:+	IRF9	interferon regulatory factor 9	protein coding gene	no	ENST00000396864.7;ENST00000561342.5;ENST00000561009.5;ENST00000560365.5;ENST00000561415.1;ENST00000559284.5;ENST00000560275.5;ENST00000561412.1;ENST00000560852.1	16.773	11.872	54.743	0.993(9518)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_AC024230.1_LS0061	chr4:19856395|19888979:+	AC024230.1	-	lncRNA gene	no	.	0.866	1.450	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_INTS11_LS0054	chr1:1315618|1315877:-	INTS11	integrator complex subunit 11	protein coding gene	no	.	3.199	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime	no
SGSM1_LS015	chr22:24868855|24876577:+	SGSM1	small G protein signaling modulator 1	protein coding gene	no	ENST00000400358.8;ENST00000473458.5;ENST00000480523.1	3.004	2.961	2.652	0.253(2424)	0.59(414)	0.727(12641)	non tumor-specific	exon_skip	yes
UN_TRAK1_LS0129	chr3:42219390|42219467:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	.	2.888	0.346	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_EFCAB7_LS0019	chr1:63551834|63557114:+	EFCAB7	EF-hand calcium binding domain 7	protein coding gene	no	.	1.486	0.345	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
LINC02594_LS001	chr17:43680365|43705429:+	LINC02594	long intergenic non-protein coding RNA 2594	lncRNA gene	no	ENST00000593169.1	0.461	0.165	0.913	0.173(1657)	0.134(94)	0.286(4965)	non tumor-specific	nAS	yes
UN_AP001533.1_UP_LS0002	chr11:101127858|101130689:+	AP001533.1	-	pseudogene	no	.	1.380	0.337	0.000	0.003(31)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_HSPB6_LS0081	chr19:35755638|35755828:+	HSPB6	heat shock protein family B (small) member 6	protein coding gene	no	.	7.054	0.506	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NCF1B_LS0001	chr7:73220717|73221378:+	NCF1B	neutrophil cytosolic factor 1B pseudogene	pseudogene	no	.	1.506	0.073	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MST1_LS0011	chr3:49685732|49685856:-	MST1	serine/threonine kinase 4	protein coding gene	yes	.	8.568	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NOL3_LS009	chr16:67171457|67173862:+	NOL3	nucleolar protein 3	protein coding gene	no	ENST00000564053.5	0.377	0.535	0.969	0.268(2571)	0.258(181)	0.449(7797)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RRP12_LS011	chr10:97370274|97370455:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000479481.5;ENST00000536831.5;ENST00000315563.10;ENST00000370992.8;ENST00000414986.5	48.310	18.352	20.237	0.99(9485)	0.996(699)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_POLR2F_LS0043	chr22:37985222|37986143:+	POLR2F	RNA polymerase II, I and III subunit F	protein coding gene	no	.	5.443	0.193	0.000	0.005(44)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GDPD5_LS027	chr11:75452970|75456757:-	GDPD5	glycerophosphodiester phosphodiesterase domain containing 5	protein coding gene	no	.;.;.	3.988	0.644	0.000	0.04(383)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_NR4A1_LS0042	chr12:52054570|52054625:-	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	.	8.191	1.580	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PCDH19_UP_LS0006	chrX:100606268|100629801:-	PCDH19	protocadherin 19	protein coding gene	no	.	1.460	0.144	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ARMH4_LS0007	chr14:58012150|58032537:-	ARMH4	armadillo like helical domain containing 4	protein coding gene	no	.	2.465	1.107	0.000	0.023(224)	0.013(9)	0(0)	non tumor-specific	nAS	no
RPL31_LS004	chr2:101002808|101004158:+	RPL31	ribosomal protein L31	protein coding gene	no	ENST00000264258.7;ENST00000409000.5;ENST00000409028.8;ENST00000409320.7;ENST00000409733.5;ENST00000409650.5;ENST00000409038.5;ENST00000419276.1;ENST00000456292.5;ENST00000409711.1;ENST00000441435.1;ENST00000264258.7;ENST00000409000.5;ENST00000409028.8;ENST00000409320.7;ENST00000409733.5;ENST00000409650.5;ENST00000409038.5;ENST00000419276.1;ENST00000456292.5;ENST00000409711.1;ENST00000441435.1	6120.174	3042.209	4112.655	0.999(9568)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RAD51D_LS032	chr17:35107447|35118501:-	RAD51D	RAD51 paralog D	protein coding gene	no	ENST00000345365.10;ENST00000394589.8;ENST00000592577.5;ENST00000415064.6;ENST00000586186.2	0.635	0.518	2.920	0.876(8397)	0.906(636)	0.912(15855)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC021683.2_LS0029	chr17:77561337|77561497:-	AC021683.2	-	lncRNA gene	no	.	1.107	0.376	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
MICAL2_LS024	chr11:12221759|12222617:+	MICAL2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein coding gene	no	ENST00000256194.8;ENST00000527546.5;ENST00000528931.5;ENST00000646065.1;ENST00000530691.5	21.713	29.481	17.168	0.839(8043)	0.943(662)	0.968(16833)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL161636.1_UP_LS0228	chr1:153070727|153140571:+	AL161636.1	-	lncRNA gene	no	.	6.077	2.007	0.000	0.01(95)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_POLR2A_LS0344	chr17:7513714|7513792:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	23.820	6.350	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ENPP7_LS0004	chr17:79735669|79737897:+	ENPP7	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein coding gene	no	.	3.338	2.288	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC004889.1_LS012	chr7:144207804|144280472:+	AC004889.1	-	lncRNA gene	no	ENST00000460955.5	0.100	0.085	0.719	0.236(2261)	0.395(277)	0.194(3380)	non tumor-specific	nAS	yes
WDR83_LS020	chr19:12673316|12675523:+	WDR83	WD repeat domain 83	protein coding gene	no	ENST00000418543.7;ENST00000546754.5;ENST00000548381.5;ENST00000425834.7;ENST00000547797.1;ENST00000552700.1	21.685	11.161	23.084	0.954(9139)	0.962(675)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
NID1_LS014	chr1:236026141|236029550:-	NID1	nidogen 1	protein coding gene	no	ENST00000366595.7;ENST00000264187.6	42.733	29.319	30.810	0.93(8906)	0.977(686)	0.946(16443)	non tumor-specific	nAS	yes
RPL3L_LS010	chr16:1954148|1957314:-	RPL3L	ribosomal protein L3 like	protein coding gene	no	ENST00000565426.1	0.001	0.000	0.498	0(1)	0(0)	0.007(125)	non tumor-specific	nAS	yes
ARHGAP21_LS004	chr10:24589302|24590206:-	ARHGAP21	Rho GTPase activating protein 21	protein coding gene	no	ENST00000636789.1	4.385	15.732	8.960	0.022(207)	0.006(4)	0.246(4279)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_COL9A3_LS0024	chr20:62836532|62838684:+	COL9A3	collagen type IX alpha 3 chain	protein coding gene	no	.	2.019	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_BX276092.5_LS0001	chrX:71761075|71761609:-	BX276092.5	-	pseudogene	no	.	16.396	0.000	0.000	0.007(65)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF493_LS0008	chr19:21399070|21400314:+	ZNF493	zinc finger protein 493	protein coding gene	no	.	0.347	0.025	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SON_LS0104	chr21:33551101|33551138:-	SON	SON DNA and RNA binding protein	protein coding gene	no	.	3.458	0.806	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_DYRK1B_LS0022	chr19:39825764|39825938:+	DYRK1B	dual specificity tyrosine phosphorylation regulated kinase 1B	protein coding gene	no	.	1.935	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-370P_UP_LS0001	chr2:24004589|24034356:+	RNU6-370P	RNA, U6 small nuclear 370, pseudogene	small non-coding RNA gene	no	.	3.373	0.104	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
STARD13_LS020	chr13:33349216|33350290:-	STARD13	StAR related lipid transfer domain containing 13	protein coding gene	yes	ENST00000439831.1	0.504	0.300	0.781	0.213(2040)	0.349(245)	0.265(4608)	non tumor-specific	intron_retention	yes
LTBP4_LS045	chr19:40619493|40622401:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	ENST00000204005.13;ENST00000308370.11;ENST00000396819.7;ENST00000243562.13;ENST00000601032.5;ENST00000612121.4;ENST00000597071.5;ENST00000595118.5;ENST00000618486.4;ENST00000596351.5;ENST00000594448.5	25.969	52.436	177.541	0.991(9491)	0.997(700)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_U95743.1_UP_LS0013	chr16:13870683|13898395:-	U95743.1	-	lncRNA gene	no	.	2.024	0.763	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BTN2A1_LS0012	chr6:26463525|26465953:+	BTN2A1	butyrophilin subfamily 2 member A1	protein coding gene	no	.	1.535	0.085	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC6A13_LS037	chr12:238343|242614:-	SLC6A13	solute carrier family 6 member 13	protein coding gene	no	ENST00000542272.5;ENST00000542272.5	0.161	0.000	1.042	0.062(592)	0.124(87)	0.091(1590)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AMPH_LS017	chr7:38432212|38436272:-	AMPH	amphiphysin	protein coding gene	no	ENST00000325590.9;ENST00000356264.6;ENST00000441628.5	7.709	15.197	5.378	0.324(3105)	0.524(368)	0.889(15460)	non tumor-specific	nAS	yes
DNAH3_LS028	chr16:21034085|21036714:-	DNAH3	dynein axonemal heavy chain 3	protein coding gene	no	ENST00000261383.3;ENST00000572640.5;ENST00000572931.1	1.936	1.160	1.825	0.226(2170)	0.154(108)	0.169(2942)	non tumor-specific	exon_skip	yes
TRAPPC11_LS007	chr4:183666426|183667060:+	TRAPPC11	trafficking protein particle complex 11	protein coding gene	no	ENST00000334690.10;ENST00000357207.8;ENST00000509857.5	16.814	14.261	12.058	0.906(8685)	0.972(682)	0.968(16834)	non tumor-specific	nAS	yes
UN_MOB1A_LS0030	chr2:74159254|74167014:-	MOB1A	MOB kinase activator 1A	protein coding gene	yes	.	29.810	5.202	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
MFSD10_LS014	chr4:2932512|2932600:-	MFSD10	major facilitator superfamily domain containing 10	protein coding gene	no	ENST00000514800.5;ENST00000355443.8;ENST00000329687.8;ENST00000508221.5;ENST00000507272.5;ENST00000507555.1;ENST00000512781.5;ENST00000509676.1	103.116	41.932	67.574	0.996(9542)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
NEK9_LS001	chr14:75084686|75084859:-	NEK9	NIMA related kinase 9	protein coding gene	no	ENST00000555763.1	0.162	0.076	0.693	0.69(6614)	0.782(549)	0.173(3015)	non tumor-specific	alt_5prime	yes
UN_STN1_UP_LS0013	chr10:103959840|103965781:-	STN1	STN1 subunit of CST complex	protein coding gene	no	.	1.549	0.140	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
TOP1MT_LS018	chr8:143328315|143329350:-	TOP1MT	DNA topoisomerase I mitochondrial	protein coding gene	no	ENST00000523417.5	0.004	0.011	0.627	0.53(5075)	0.472(331)	0.001(26)	non tumor-specific	exon_skip;mutex_exons	yes
UN_DEAF1_LS0054	chr11:691598|706338:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	.	1.463	0.641	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
PRUNE2_LS028	chr9:76711358|76713563:-	PRUNE2	prune homolog 2 with BCH domain	protein coding gene	no	ENST00000376718.7;ENST00000443509.6;ENST00000428286.5	2.420	2.343	2.779	0.34(3256)	0.54(379)	0.643(11177)	non tumor-specific	nAS	yes
UN_NAA16_LS0018	chr13:41362159|41362756:+	NAA16	N-alpha-acetyltransferase 16, NatA auxiliary subunit	protein coding gene	no	.	2.233	0.209	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NUP188_LS029	chr9:128988186|128990120:+	NUP188	nucleoporin 188	protein coding gene	no	ENST00000372577.2;ENST00000477069.5	26.447	12.023	19.897	0.959(9184)	0.981(689)	0.977(16983)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WIZ_LS0059	chr19:15428277|15428321:+	WIZ	WIZ zinc finger	protein coding gene	no	.	2.114	0.370	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC27A2_LS003	chr15:50197709|50198235:+	SLC27A2	solute carrier family 27 member 2	protein coding gene	no	ENST00000544960.1	0.015	0.021	0.811	0.095(910)	0.184(129)	0.032(561)	non tumor-specific	exon_skip	yes
ZNF583_LS005	chr19:56404429|56407026:+	ZNF583	zinc finger protein 583	protein coding gene	no	ENST00000391778.3	0.060	0.114	0.713	0.219(2102)	0.278(195)	0.217(3772)	non tumor-specific	alt_5prime	yes
CERCAM_LS016	chr9:128424272|128424410:+	CERCAM	cerebral endothelial cell adhesion molecule	protein coding gene	no	ENST00000372842.5;ENST00000420512.5;ENST00000372838.8;ENST00000612334.1;ENST00000463535.5;ENST00000483893.5	31.221	21.728	43.599	0.97(9293)	0.98(688)	0.972(16902)	non tumor-specific	exon_skip	yes
PLB1_LS007	chr2:28525945|28529317:+	PLB1	phospholipase B1	protein coding gene	no	ENST00000416713.5;ENST00000327757.9;ENST00000422425.6;ENST00000404858.5	1.306	0.347	1.290	0.033(320)	0.019(13)	0.201(3488)	non tumor-specific	nAS	yes
UN_TENT4A_LS0015	chr5:6748590|6749565:+	TENT4A	terminal nucleotidyltransferase 4A	protein coding gene	no	.	1.991	0.194	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CALD1_LS037	chr7:134960111|134960533:+	CALD1	caldesmon 1	protein coding gene	no	ENST00000417172.5;ENST00000422748.5;ENST00000430085.5;ENST00000361675.6;ENST00000361901.6;ENST00000393118.6;ENST00000443197.5;ENST00000424922.5;ENST00000495522.1;ENST00000466704.1	111.090	143.815	190.513	0.981(9399)	0.997(700)	0.971(16878)	non tumor-specific	exon_skip	yes
ZNF814_LS020	chr19:57868579|57876916:-	ZNF814	zinc finger protein 814	protein coding gene	no	ENST00000595894.5;ENST00000600634.5;ENST00000595048.5	0.311	0.215	1.003	0.659(6318)	0.722(507)	0.514(8939)	non tumor-specific	alt_3prime;exon_skip	yes
ARRDC1_LS021	chr9:137614475|137614559:+	ARRDC1	arrestin domain containing 1	protein coding gene	no	ENST00000371421.8;ENST00000419386.1;ENST00000491911.5;ENST00000497877.5;ENST00000475658.1	83.042	40.261	62.646	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AC132008.2_UP_LS0007	chr3:197649636|197650369:-	AC132008.2	-	pseudogene	no	.	4.179	0.051	0.000	0.008(79)	0.001(1)	0(0)	non tumor-specific	nAS	no
IFI44_LS028	chr1:78662917|78663765:+	IFI44	interferon induced protein 44	protein coding gene	no	ENST00000446486.1	0.393	0.177	1.456	0.85(8142)	0.838(588)	0.579(10056)	non tumor-specific	alt_5prime;intron_retention	yes
UN_IGLC2_UP_LS0006	chr22:22410282|22899621:+	IGLC2	immunoglobulin lambda constant 2	no	no	.	371.116	17.936	0.000	0.008(73)	0.009(6)	0(0)	non tumor-specific	nAS	no
IGDCC3_LS014	chr15:65335421|65335812:-	IGDCC3	immunoglobulin superfamily DCC subclass member 3	protein coding gene	no	ENST00000327987.8;ENST00000558354.5;ENST00000559058.1	4.813	0.718	1.967	0.14(1341)	0.125(88)	0.261(4541)	non tumor-specific	exon_skip	yes
NT5DC3_LS021	chr12:103806929|103814937:-	NT5DC3	5'-nucleotidase domain containing 3	protein coding gene	no	ENST00000392876.7	5.130	4.444	3.882	0.596(5707)	0.658(462)	0.875(15208)	non tumor-specific	nAS	yes
UN_FAM189B_LS0024	chr1:155247910|155248207:+	FAM189B	family with sequence similarity 189 member B	protein coding gene	yes	.	1.030	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SCOC_LS011	chr4:140379192|140380962:+	SCOC	short coiled-coil protein	protein coding gene	no	ENST00000506597.1	0.530	0.415	3.056	0.827(7919)	0.87(611)	0.871(15147)	non tumor-specific	exon_skip	yes
UN_ERVMER61-1_LS0059	chr1:187470192|187484423:+	ERVMER61-1	endogenous retrovirus group MER61 member 1	lncRNA gene	no	.	1.560	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRDM2_LS0006	chr1:13700991|13715541:+	PRDM2	PR/SET domain 2	protein coding gene	yes	.	0.486	0.842	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CTBP2_LS0073	chr10:125074843|125088191:-	CTBP2	C-terminal binding protein 2	protein coding gene	yes	.	1.810	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
GLRA2_LS008	chrX:14574400|14581183:+	GLRA2	glycine receptor alpha 2	protein coding gene	no	ENST00000443437.6;ENST00000218075.8;ENST00000415367.1	2.758	1.328	2.827	0.051(486)	0.043(30)	0.13(2256)	non tumor-specific	mutex_exons	yes
CENPJ_LS027	chr13:24908126|24909790:-	CENPJ	centromere protein J	protein coding gene	no	ENST00000616936.4;ENST00000381884.8;ENST00000545981.5	4.720	2.031	3.599	0.771(7391)	0.783(550)	0.883(15344)	non tumor-specific	exon_skip	yes
MRPL38_LS013	chr17:75902154|75904222:-	MRPL38	mitochondrial ribosomal protein L38	protein coding gene	no	ENST00000464758.1	0.016	0.085	1.218	0.754(7223)	0.688(483)	0.627(10906)	non tumor-specific	alt_5prime;exon_skip	yes
SMG6_LS004	chr17:2065679|2068778:-	SMG6	SMG6 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000263073.10;ENST00000573166.5;ENST00000354901.8;ENST00000570756.5;ENST00000576218.5;ENST00000536871.6;ENST00000573827.1	43.560	29.636	30.427	0.974(9335)	0.99(695)	0.979(17017)	non tumor-specific	exon_skip	yes
POGZ_LS029	chr1:151442205|151454962:-	POGZ	pogo transposable element derived with ZNF domain	protein coding gene	no	ENST00000533461.5;ENST00000450842.1	0.231	0.243	2.334	0.614(5884)	0.707(496)	0.794(13807)	non tumor-specific	exon_skip;mutex_exons	yes
CRELD2_LS004	chr22:49919840|49920156:+	CRELD2	cysteine rich with EGF like domains 2	protein coding gene	no	ENST00000450207.5;ENST00000404488.7;ENST00000328268.8;ENST00000483652.5;ENST00000407217.7;ENST00000403427.3;ENST00000482956.5	114.335	62.591	49.786	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CDH4_LS017	chr20:61933124|61934056:+	CDH4	cadherin 4	protein coding gene	yes	ENST00000614565.4;ENST00000611855.4;ENST00000543233.2	7.723	2.021	2.100	0.254(2435)	0.131(92)	0.41(7120)	non tumor-specific	nAS	yes
UN_PRKAA1_UP_LS0004	chr5:40822268|40832442:-	PRKAA1	protein kinase AMP-activated catalytic subunit alpha 1	protein coding gene	yes	.	1.155	0.183	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC009950.1_LS0006	chr2:230166539|230166592:-	AC009950.1	-	lncRNA gene	no	.	2.593	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_THEMIS_LS0008	chr6:127829934|127842061:-	THEMIS	thymocyte selection associated	protein coding gene	no	.	0.887	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_EGLN1_LS0009	chr1:231367636|231373980:-	EGLN1	egl-9 family hypoxia inducible factor 1	protein coding gene	yes	.	6.230	0.733	0.000	0.025(238)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_PTPRG_LS0073	chr3:62277004|62292614:-	PTPRG	protein tyrosine phosphatase receptor type G	protein coding gene	no	.	2.138	0.315	0.000	0.026(249)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AL645929.2_LS0005	chr6:29877197|29877825:-	AL645929.2	-	pseudogene	no	.	1.496	0.875	0.000	0.001(14)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC135584.1_UP_LS0004	chr12:63022121|63022719:+	AC135584.1	-	lncRNA gene	no	.	3.357	0.253	0.000	0.011(110)	0.004(3)	0(0)	non tumor-specific	nAS	no
MICAL2_LS032	chr11:12239585|12241040:+	MICAL2	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein coding gene	no	ENST00000256194.8;ENST00000646065.1	1.208	15.288	2.830	0.065(621)	0.033(23)	0.532(9249)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TOLLIP_LS0032	chr11:1295794|1298086:-	TOLLIP	toll interacting protein	protein coding gene	no	.	1.782	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PKM_LS0019	chr15:72199086|72199189:+	PKM	pyruvate kinase M1/2	protein coding gene	no	.	13.681	0.052	0.000	0.012(119)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_OSTN_LS0023	chr3:191248779|191261069:-	OSTN	osteocrin	protein coding gene	no	.	2.439	1.989	0.000	0.013(126)	0.019(13)	0(0)	non tumor-specific	nAS	no
ANKRD28_LS035	chr3:15766312|15795223:-	ANKRD28	ankyrin repeat domain 28	protein coding gene	no	ENST00000624145.3;ENST00000399451.6;ENST00000412318.5;ENST00000497037.5;ENST00000451422.1;ENST00000498524.5;ENST00000439830.5	11.934	7.212	8.428	0.854(8182)	0.947(665)	0.952(16554)	non tumor-specific	exon_skip	yes
GRIPAP1_LS027	chrX:48991102|48997250:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	ENST00000611757.4;ENST00000622231.1;ENST00000611757.4;ENST00000622231.1	0.164	0.146	0.770	0.613(5875)	0.594(417)	0.284(4930)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KAT2B_LS0008	chr3:20071487|20071584:+	KAT2B	lysine acetyltransferase 2B	protein coding gene	no	.	1.050	0.112	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CACNA1E_LS010	chr1:181711069|181715338:+	CACNA1E	calcium voltage-gated channel subunit alpha1 E	protein coding gene	no	ENST00000524607.6;ENST00000367570.5;ENST00000621791.4;ENST00000360108.7;ENST00000367573.6;ENST00000357570.9;ENST00000367567.8;ENST00000621551.3;ENST00000358338.7	4.600	1.088	2.014	0.063(604)	0.019(13)	0.184(3194)	non tumor-specific	nAS	yes
UN_FAM149A_LS0028	chr4:186153770|186154448:+	FAM149A	family with sequence similarity 149 member A	protein coding gene	no	.	3.436	1.043	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ANPEP_LS039	chr15:89806809|89814625:-	ANPEP	alanyl aminopeptidase, membrane	protein coding gene	no	.;.	2.935	4.237	0.000	0.003(29)	0.02(14)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
BRDT_LS023	chr1:91962946|91964627:+	BRDT	bromodomain testis associated	protein coding gene	no	ENST00000362005.7;ENST00000399546.6;ENST00000423434.5;ENST00000440509.5;ENST00000427104.5;ENST00000448194.5;ENST00000426141.5;ENST00000450792.5;ENST00000548992.5;ENST00000552654.1;ENST00000402388.1	2.597	0.000	0.679	0.049(469)	0(0)	0.015(259)	non tumor-specific	exon_skip	yes
POLE2_LS012	chr14:49654067|49654155:-	POLE2	DNA polymerase epsilon 2, accessory subunit	protein coding gene	no	ENST00000556937.5;ENST00000216367.9;ENST00000539565.6;ENST00000556584.5;ENST00000554377.1;ENST00000554396.5;ENST00000553850.1	7.899	1.172	2.518	0.975(9340)	0.917(644)	0.837(14549)	non tumor-specific	intron_retention	yes
IGF2R_LS033	chr6:160072884|160073213:+	IGF2R	insulin like growth factor 2 receptor	protein coding gene	yes	ENST00000356956.5;ENST00000647592.1;ENST00000650503.1	64.366	48.569	26.154	0.949(9089)	0.987(693)	0.977(16980)	non tumor-specific	alt_5prime;exon_skip	yes
UN_C1QB_LS0033	chr1:22661106|22661162:-	C1QB	complement C1q B chain	protein coding gene	no	.	13.589	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
APPBP2_LS011	chr17:60466459|60479148:-	APPBP2	amyloid beta precursor protein binding protein 2	protein coding gene	no	ENST00000083182.7;ENST00000589341.5	24.368	17.997	14.742	0.952(9118)	0.977(686)	0.975(16951)	non tumor-specific	exon_skip	yes
UN_TCHP_LS0014	chr12:109911235|109914442:+	TCHP	trichoplein keratin filament binding	protein coding gene	yes	.	2.921	0.104	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_MEPCE_LS0041	chr7:100431222|100431334:-	MEPCE	methylphosphate capping enzyme	protein coding gene	no	.	3.029	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
GRID1_LS007	chr10:85723141|85724352:-	GRID1	glutamate ionotropic receptor delta type subunit 1	protein coding gene	no	ENST00000327946.11;ENST00000464741.2	12.721	6.413	5.430	0.469(4495)	0.654(459)	0.846(14711)	non tumor-specific	exon_skip	yes
TARDBP_LS027	chr1:11024335|11025110:+	TARDBP	TAR DNA binding protein	protein coding gene	no	ENST00000477447.6;ENST00000611008.4;ENST00000496840.1;ENST00000480464.2	0.928	0.791	17.987	0.871(8349)	0.86(604)	0.972(16893)	non tumor-specific	exon_skip;intron_retention	yes
ZFR2_LS009	chr19:3820290|3821340:-	ZFR2	zinc finger RNA binding protein 2	protein coding gene	no	ENST00000262961.8	1.677	0.265	3.476	0.034(327)	0.006(4)	0.205(3555)	non tumor-specific	nAS	yes
TRPV4_LS019	chr12:109803143|109808296:-	TRPV4	transient receptor potential cation channel subfamily V member 4	protein coding gene	no	ENST00000418703.6;ENST00000261740.6;ENST00000538125.5;ENST00000544971.5;ENST00000537083.5;ENST00000541794.5;ENST00000536838.1	6.087	5.320	1.835	0.655(6277)	0.759(533)	0.594(10325)	non tumor-specific	exon_skip	yes
PLCZ1_LS010	chr12:18701776|18705166:-	PLCZ1	phospholipase C zeta 1	protein coding gene	no	ENST00000648272.1;ENST00000318197.10;ENST00000538330.5;ENST00000540270.5;ENST00000266505.11;ENST00000539875.5;ENST00000542762.5;ENST00000543242.5;ENST00000539072.5	1.066	0.134	0.685	0(4)	0.001(1)	0.014(235)	non tumor-specific	exon_skip	yes
PKM_LS017	chr15:72209859|72210347:-	PKM	pyruvate kinase M1/2	protein coding gene	no	ENST00000449901.6;ENST00000319622.10;ENST00000565184.5;ENST00000335181.9;ENST00000567118.5;ENST00000565154.5;ENST00000568459.5;ENST00000561609.5;ENST00000569857.5;ENST00000562784.1;ENST00000564178.5;ENST00000562997.5;ENST00000567087.5	1419.415	674.559	508.986	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
USP43_LS001	chr17:9645342|9656403:+	USP43	ubiquitin specific peptidase 43	protein coding gene	no	ENST00000570827.6	0.028	0.115	0.719	0.219(2101)	0.242(170)	0.072(1252)	non tumor-specific	nAS	yes
MYB_LS047	chr6:135202669|135202948:+	MYB	MYB proto-oncogene, transcription factor	protein coding gene	yes	ENST00000316528.12	0.000	0.000	0.634	0.001(6)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_NIN_LS0033	chr14:50754867|50761790:-	NIN	ninein	protein coding gene	no	.	1.012	0.268	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CCDC106_LS006	chr19:55648277|55648946:+	CCDC106	coiled-coil domain containing 106	protein coding gene	no	ENST00000588740.5;ENST00000588740.5	0.228	0.678	2.069	0.737(7058)	0.795(558)	0.839(14575)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TOGARAM1_LS019	chr14:45044870|45052436:+	TOGARAM1	TOG array regulator of axonemal microtubules 1	protein coding gene	no	ENST00000361577.7	0.350	0.258	0.780	0.333(3192)	0.403(283)	0.255(4433)	non tumor-specific	exon_skip	yes
UN_GPSM3_LS0014	chr6:32192238|32192472:-	GPSM3	G protein signaling modulator 3	protein coding gene	no	.	4.177	0.370	0.000	0.011(104)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MYO9A_LS008	chr15:71848968|71851253:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000568481.1	0.449	0.226	0.697	0.028(273)	0.104(73)	0.121(2096)	non tumor-specific	exon_skip	yes
VPS37A_LS027	chr8:17284616|17286347:+	VPS37A	VPS37A subunit of ESCRT-I	protein coding gene	no	ENST00000324849.8;ENST00000520140.5;ENST00000425020.6;ENST00000521829.5;ENST00000521976.1	69.558	45.880	55.320	0.993(9517)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
AL133456.1_LS001	chr22:27563922|27564007:-	AL133456.1	-	lncRNA gene	no	ENST00000415655.1	1.218	0.000	0.859	0(1)	0(0)	0.001(22)	non tumor-specific	nAS	yes
CDC42BPG_LS001	chr11:64824529|64826470:-	CDC42BPG	CDC42 binding protein kinase gamma	protein coding gene	no	ENST00000342711.5	19.761	12.400	6.307	0.787(7539)	0.856(601)	0.74(12854)	non tumor-specific	alt_5prime;exon_skip	yes
UN_UBE2F-SCLY_LS0048	chr2:238096692|238096801:+	UBE2F-SCLY	UBE2F-SCLY readthrough (NMD candidate)	protein coding gene	no	.	1.570	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DOCK11_LS033	chrX:118618728|118624539:+	DOCK11	dedicator of cytokinesis 11	protein coding gene	no	ENST00000276204.10;ENST00000276202.8;ENST00000633080.1	14.154	8.351	11.061	0.761(7292)	0.877(616)	0.927(16119)	non tumor-specific	exon_skip	yes
RANBP17_LS042	chr5:171241142|171242682:+	RANBP17	RAN binding protein 17	protein coding gene	no	ENST00000523189.5;ENST00000389118.8;ENST00000519256.5;ENST00000522533.5;ENST00000522066.5;ENST00000519949.5;ENST00000521759.5;ENST00000521834.1	6.048	2.161	4.240	0.57(5462)	0.446(313)	0.854(14840)	non tumor-specific	alt_5prime;exon_skip	yes
KRT16P3_LS006	chr17:20503234|20503372:-	KRT16P3	keratin 16 pseudogene 3	pseudogene	no	ENST00000580621.5;ENST00000439127.6;ENST00000580113.1	4.401	2.979	2.936	0.16(1534)	0.12(84)	0.064(1114)	non tumor-specific	nAS	yes
UN_MYL12BP2_UP_LS0018	chr4:184334611|184338164:-	MYL12BP2	myosin light chain 12B pseudogene 2	pseudogene	no	.	7.359	1.833	0.000	0.003(27)	0.013(9)	0(0)	non tumor-specific	nAS	no
NT5C2_LS008	chr10:103094038|103094348:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	ENST00000404739.7;ENST00000343289.9;ENST00000369857.8;ENST00000421281.1;ENST00000469228.1	77.624	55.573	58.316	0.99(9481)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
AMY1B_LS002	chr1:103689083|103689194:-	AMY1B	amylase alpha 1B	protein coding gene	no	ENST00000370080.7;ENST00000330330.9	7.966	6.852	0.790	0.263(2517)	0.375(263)	0.249(4336)	non tumor-specific	exon_skip	yes
REX1BD_LS001	chr19:18588900|18588995:+	REX1BD	required for excision 1-B domain containing	protein coding gene	no	ENST00000598375.5;ENST00000358607.10;ENST00000450195.6;ENST00000600997.5;ENST00000601736.1;ENST00000597371.1	88.857	36.417	106.163	0.964(9232)	0.957(672)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FAR1_LS012	chr11:13714680|13715801:+	FAR1	fatty acyl-CoA reductase 1	protein coding gene	no	ENST00000527202.1	0.306	0.118	0.624	0.071(681)	0.117(82)	0.032(559)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
VPS13D_LS016	chr1:12267920|12268706:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4	2.523	3.158	4.754	0.533(5103)	0.789(554)	0.912(15844)	non tumor-specific	alt_3prime;exon_skip	yes
COG8_LS003	chr16:69329179|69330813:-	COG8	component of oligomeric golgi complex 8	protein coding gene	no	ENST00000306875.9;ENST00000648169.1	12.626	7.152	10.672	0.929(8898)	0.949(666)	0.975(16948)	non tumor-specific	nAS	yes
UN_WDR62_LS0045	chr19:36102248|36102444:+	WDR62	WD repeat domain 62	protein coding gene	no	.	3.639	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
NBPF19_LS048	chr1:149513528|149518992:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000426482.3	0.596	0.291	0.576	0.04(381)	0.064(45)	0(3)	non tumor-specific	nAS	yes
UN_ATXN7L1_LS0048	chr7:105875874|105876378:-	ATXN7L1	ataxin 7 like 1	protein coding gene	no	.	1.279	0.000	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SMPD4_LS0023	chr2:130152485|130152624:+	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	.	1.978	0.271	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AP000902.2_UP_LS0006	chr18:9615014|9619195:+	AP000902.2	-	lncRNA gene	no	.	3.292	0.583	0.000	0.037(358)	0.027(19)	0(0)	non tumor-specific	nAS	no
SDCCAG8_LS027	chr1:243378863|243415702:+	SDCCAG8	SHH signaling and ciliogenesis regulator SDCCAG8	protein coding gene	no	ENST00000366541.7;ENST00000493334.1	23.989	12.403	18.782	0.988(9470)	0.993(697)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
NIPSNAP1_LS007	chr22:29561862|29569193:-	NIPSNAP1	nipsnap homolog 1	protein coding gene	no	ENST00000216121.11;ENST00000437094.5;ENST00000415100.5	112.099	88.401	29.083	0.993(9516)	0.996(699)	0.977(16987)	non tumor-specific	exon_skip	yes
BABAM1_LS018	chr19:17275825|17276495:+	BABAM1	BRISC and BRCA1 A complex member 1	protein coding gene	no	ENST00000598188.5;ENST00000594247.5;ENST00000359435.8;ENST00000599474.5;ENST00000601043.5;ENST00000596335.5;ENST00000601938.5;ENST00000602066.5	99.692	56.528	119.896	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	mutex_exons	yes
TRPA1_LS002	chr8:72023116|72023814:-	TRPA1	transient receptor potential cation channel subfamily A member 1	protein coding gene	no	ENST00000262209.4	4.192	3.356	1.713	0.208(1996)	0.147(103)	0.212(3690)	non tumor-specific	alt_3prime	yes
UN_ATXN2L_LS0003	chr16:28823288|28823371:-	ATXN2L	ataxin 2 like	protein coding gene	no	.	2.063	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ATP13A2_LS002	chr1:16986358|16986805:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000341676.9;ENST00000502418.1	8.779	4.603	2.874	0.922(8835)	0.85(597)	0.905(15724)	non tumor-specific	exon_skip	yes
UN_ITGB1BP1_LS0024	chr2:9406438|9406495:-	ITGB1BP1	integrin subunit beta 1 binding protein 1	protein coding gene	no	.	19.759	3.696	0.000	0.042(400)	0.03(21)	0(0)	non tumor-specific	nAS	no
CD9_LS030	chr12:6235565|6236192:+	CD9	CD9 molecule	protein coding gene	no	ENST00000382518.6;ENST00000642746.1;ENST00000538834.6;ENST00000610354.4;ENST00000382519.9;ENST00000009180.9;ENST00000645565.1;ENST00000382515.7;ENST00000481267.6;ENST00000646407.1;ENST00000540891.1;ENST00000382518.6;ENST00000642746.1;ENST00000538834.6;ENST00000610354.4;ENST00000382519.9;ENST00000009180.9;ENST00000645565.1;ENST00000382515.7;ENST00000481267.6;ENST00000646407.1;ENST00000540891.1;ENST00000382518.6;ENST00000642746.1;ENST00000538834.6;ENST00000610354.4;ENST00000382519.9;ENST00000009180.9;ENST00000645565.1;ENST00000382515.7;ENST00000481267.6;ENST00000646407.1;ENST00000540891.1	1200.745	768.312	627.153	0.997(9554)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FAM118B_LS016	chr11:126256852|126261428:+	FAM118B	family with sequence similarity 118 member B	protein coding gene	no	ENST00000528985.5;ENST00000360194.8	12.924	8.228	8.061	0.946(9065)	0.936(657)	0.971(16885)	non tumor-specific	alt_3prime;exon_skip	yes
AC024592.2_LS002	chr19:5852673|5854571:+	AC024592.2	-	lncRNA gene	no	ENST00000589276.1	2.498	0.654	0.710	0.007(67)	0.021(15)	0.012(207)	non tumor-specific	nAS	yes
SSX2IP_LS005	chr1:84651997|84655465:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	ENST00000476905.6	0.026	0.617	0.654	0(3)	0.001(1)	0.011(198)	non tumor-specific	exon_skip	yes
MIR99AHG_LS025	chr21:16630972|16640230:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	ENST00000413645.1	1.436	0.843	2.331	0.408(3913)	0.578(406)	0.721(12531)	non tumor-specific	nAS	yes
UN_ZFX_LS0056	chrX:24208370|24208546:+	ZFX	zinc finger protein X-linked	protein coding gene	no	.	1.380	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC009053.4_UP_LS0005	chr16:74406699|74407168:-	AC009053.4	-	pseudogene	no	.	2.444	0.775	0.000	0.019(181)	0.066(46)	0(0)	non tumor-specific	nAS	no
ABCG2_LS019	chr4:88140014|88158577:-	ABCG2	ATP binding cassette subfamily G member 2 (Junior blood group)	protein coding gene	yes	ENST00000505480.6	0.767	0.982	1.505	0.435(4165)	0.772(542)	0.492(8549)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PREX1_LS0045	chr20:48745147|48827642:-	PREX1	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1	protein coding gene	no	.	1.325	0.069	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_MAPK14_LS0035	chr6:36095893|36095987:+	MAPK14	mitogen-activated protein kinase 14	protein coding gene	no	.	1.981	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FCRL3_LS020	chr1:157697329|157697659:-	FCRL3	Fc receptor like 3	protein coding gene	no	ENST00000494724.5	0.139	0.271	0.912	0.04(388)	0.044(31)	0.037(645)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GRK6_LS021	chr5:177435121|177436073:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000355472.9;ENST00000507633.5;ENST00000393576.7;ENST00000355958.9;ENST00000528793.5;ENST00000515666.5;ENST00000508705.1	84.274	37.004	31.905	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
METAP1_LS008	chr4:99028918|99034230:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	ENST00000296411.10;ENST00000507537.5;ENST00000506238.5;ENST00000503247.5;ENST00000513199.5;ENST00000506548.1	32.890	22.495	16.501	0.97(9292)	0.99(695)	0.974(16924)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FUT8_LS0012	chr14:65455718|65461088:+	FUT8	fucosyltransferase 8	protein coding gene	no	.	1.409	0.035	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CDHR5_LS0066	chr11:619850|620067:-	CDHR5	cadherin related family member 5	protein coding gene	no	.	5.618	2.797	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC115284.1_LS003	chr3:51962088|51971460:-	AC115284.1	-	lncRNA gene	no	ENST00000488257.2	0.017	0.018	0.647	0.414(3965)	0.464(326)	0.05(867)	non tumor-specific	nAS	yes
TMEM255A_LS006	chrX:120277047|120285127:-	TMEM255A	transmembrane protein 255A	protein coding gene	no	ENST00000309720.9;ENST00000371369.8;ENST00000371352.5	12.976	3.385	2.596	0.468(4483)	0.681(478)	0.703(12218)	non tumor-specific	exon_skip	yes
APOBEC3B-AS1_LS001	chr22:38991618|38992398:-	APOBEC3B-AS1	APOBEC3B antisense RNA 1	lncRNA gene	no	ENST00000513758.2	2.409	0.215	0.866	0.031(294)	0.007(5)	0.161(2790)	non tumor-specific	nAS	yes
UN_AL513327.1_LS0007	chr1:33312890|33323552:-	AL513327.1	-	lncRNA gene	no	.	0.518	0.156	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FLCN_LS0009	chr17:17224143|17224458:-	FLCN	folliculin	protein coding gene	yes	.	0.800	0.789	0.000	0.011(103)	0.021(15)	0(0)	non tumor-specific	nAS	no
GAK_LS025	chr4:867025|932071:-	GAK	cyclin G associated kinase	protein coding gene	no	ENST00000618573.4	0.516	0.077	0.605	0.006(57)	0.007(5)	0.003(47)	non tumor-specific	nAS	yes
UN_SLC30A4_LS0015	chr15:45490881|45521964:-	SLC30A4	solute carrier family 30 member 4	protein coding gene	no	.	1.253	0.244	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NHLRC3_LS0002	chr13:39038723|39038952:+	NHLRC3	NHL repeat containing 3	protein coding gene	no	.	2.642	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL353807.3_LS0008	chr1:155615674|155617323:-	AL353807.3	-	pseudogene	no	.	1.158	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00858_LS0016	chr10:84292378|84293246:+	LINC00858	long intergenic non-protein coding RNA 858	lncRNA gene	no	.	2.315	0.000	0.000	0.007(67)	0(0)	0(0)	non tumor-specific	nAS	no
SLC11A2_LS002	chr12:50980058|50981639:-	SLC11A2	solute carrier family 11 member 2	protein coding gene	no	ENST00000546636.5	2.404	1.234	2.220	0.773(7410)	0.785(551)	0.845(14686)	non tumor-specific	alt_3prime;intron_retention	yes
POMT2_LS016	chr14:77280080|77280392:-	POMT2	protein O-mannosyltransferase 2	protein coding gene	no	ENST00000261534.8;ENST00000554767.5;ENST00000452340.7;ENST00000556171.1;ENST00000555134.1	9.587	5.161	20.094	0.978(9370)	0.973(683)	0.977(16981)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KIF3AP1_UP_LS0054	chr3:195821877|195825510:+	KIF3AP1	kinesin family member 3A pseudogene 1	pseudogene	no	.	1.144	0.474	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NDST3_LS008	chr4:118224673|118226886:+	NDST3	N-deacetylase and N-sulfotransferase 3	protein coding gene	no	ENST00000296499.5	2.342	0.643	1.875	0.038(363)	0.03(21)	0.154(2683)	non tumor-specific	nAS	yes
UN_WASHC5_LS0031	chr8:125067719|125068999:-	WASHC5	WASH complex subunit 5	protein coding gene	no	.	4.179	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM131L_LS019	chr4:153589007|153591053:+	TMEM131L	transmembrane 131 like	protein coding gene	no	ENST00000409663.7;ENST00000409959.7	11.239	5.891	5.244	0.824(7895)	0.949(666)	0.896(15582)	non tumor-specific	exon_skip	yes
WASF3_LS008	chr13:26671989|26680035:+	WASF3	WASP family member 3	protein coding gene	no	ENST00000361042.8	6.729	8.807	11.286	0.547(5242)	0.887(623)	0.91(15810)	non tumor-specific	exon_skip	yes
UN_PSPC1P1_LS0021	chr13:19214548|19217387:-	PSPC1P1	paraspeckle component 1 pseudogene 1	pseudogene	no	.	3.196	1.220	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PITPNM3_LS009	chr17:6464771|6468225:-	PITPNM3	PITPNM family member 3	protein coding gene	no	ENST00000421306.7;ENST00000262483.12;ENST00000576664.5;ENST00000572795.1	5.201	8.702	5.181	0.546(5235)	0.833(585)	0.823(14307)	non tumor-specific	exon_skip	yes
UN_NOP53-AS1_LS0001	chr19:47757148|47758446:+	NOP53-AS1	NOP53 antisense RNA 1	lncRNA gene	no	.	0.857	0.084	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
P4HA2_LS034	chr5:132227221|132227790:-	P4HA2	prolyl 4-hydroxylase subunit alpha 2	protein coding gene	no	ENST00000401867.5;ENST00000166534.8;ENST00000453286.5;ENST00000418055.5	3.085	1.710	3.719	0.853(8172)	0.91(639)	0.836(14538)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_CENPCP1_UP_LS0003	chr12:89353920|89398440:+	CENPCP1	centromere protein C pseudogene 1	pseudogene	no	.	1.705	0.253	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
IQGAP2_LS013	chr5:76600972|76606179:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000274364.10;ENST00000514350.5;ENST00000505766.5;ENST00000379730.7	21.324	24.958	5.331	0.683(6541)	0.902(633)	0.767(13335)	non tumor-specific	nAS	yes
ADCY10P1_LS021	chr6:41123249|41124510:+	ADCY10P1	ADCY10 pseudogene 1	pseudogene	no	ENST00000457653.8	4.517	0.000	0.753	0.001(7)	0(0)	0.137(2374)	non tumor-specific	nAS	yes
UN_ZNF589_LS0023	chr3:48250987|48256845:+	ZNF589	zinc finger protein 589	protein coding gene	no	.	0.837	0.131	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_PLEC_LS0121	chr8:143915783|143915845:+	PLEC	plectin	protein coding gene	no	.	8.800	0.579	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IFITM2_LS0260	chr11:314356|314927:+	IFITM2	interferon induced transmembrane protein 2	protein coding gene	no	.	33.416	28.388	0.000	0.036(343)	0.036(25)	0(0)	non tumor-specific	nAS	no
DCC_LS013	chr18:52934890|52965031:+	DCC	DCC netrin 1 receptor	protein coding gene	yes	ENST00000581580.5	0.000	0.006	1.111	0(0)	0.001(1)	0(6)	non tumor-specific	nAS	yes
PLPPR2_LS001	chr19:11355572|11356802:+	PLPPR2	phospholipid phosphatase related 2	protein coding gene	no	ENST00000251473.9;ENST00000591329.5;ENST00000586431.5;ENST00000586380.5;ENST00000591608.1	6.557	5.058	23.441	0.924(8855)	0.96(674)	0.978(16997)	non tumor-specific	nAS	yes
AC005899.4_LS001	chr17:32324525|32350277:+	AC005899.4	-	lncRNA gene	no	ENST00000581915.5	0.174	0.045	0.735	0.006(53)	0.004(3)	0.002(35)	non tumor-specific	nAS	yes
CMC2_LS018	chr16:80981877|80997314:-	CMC2	C-X9-C motif containing 2	protein coding gene	no	ENST00000219400.7;ENST00000563779.5;ENST00000561614.5;ENST00000564249.5;ENST00000565650.5;ENST00000565914.5;ENST00000565925.5;ENST00000565613.5;ENST00000569666.5;ENST00000562713.3;ENST00000562828.5;ENST00000219400.7;ENST00000563779.5;ENST00000561614.5;ENST00000564249.5;ENST00000565650.5;ENST00000565914.5;ENST00000565925.5;ENST00000565613.5;ENST00000569666.5;ENST00000562713.3;ENST00000562828.5	41.365	24.132	60.596	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AC011330.2_UP_LS0018	chr15:43649193|43746482:-	AC011330.2	-	lncRNA gene	no	.	1.899	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ZBTB8OS_LS005	chr1:32627544|32633262:-	ZBTB8OS	zinc finger and BTB domain containing 8 opposite strand	protein coding gene	no	ENST00000473294.6	0.063	0.309	2.262	0.423(4055)	0.501(352)	0.709(12318)	non tumor-specific	exon_skip;mutex_exons	yes
NSUN2_LS028	chr5:6631977|6632599:-	NSUN2	NOP2/Sun RNA methyltransferase 2	protein coding gene	no	ENST00000264670.10;ENST00000504374.5	38.951	18.537	19.469	0.969(9284)	0.99(695)	0.975(16950)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01117_LS0007	chr2:176639259|176639491:+	LINC01117	long intergenic non-protein coding RNA 1117	lncRNA gene	no	.	1.611	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
ADAMTS2_LS019	chr5:179158879|179181072:-	ADAMTS2	ADAM metallopeptidase with thrombospondin type 1 motif 2	protein coding gene	no	ENST00000251582.11;ENST00000518335.3;ENST00000274609.5	18.661	8.324	15.487	0.721(6909)	0.823(578)	0.926(16094)	non tumor-specific	nAS	yes
UN_TROAP_LS0031	chr12:49330634|49330668:-	TROAP	trophinin associated protein	protein coding gene	no	.	2.476	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
STARD4_LS015	chr5:111507442|111512385:-	STARD4	StAR related lipid transfer domain containing 4	protein coding gene	no	ENST00000296632.7;ENST00000511137.5;ENST00000502322.5;ENST00000509887.5;ENST00000510346.5;ENST00000455172.2;ENST00000508215.1	5.254	4.315	4.772	0.893(8557)	0.926(650)	0.904(15721)	non tumor-specific	alt_5prime;exon_skip	yes
CYP4F26P_LS005	chr9:33603550|33605011:+	CYP4F26P	cytochrome P450 family 4 subfamily F member 26, pseudogene	lncRNA gene	no	ENST00000433357.2	2.703	0.323	1.987	0.019(181)	0.013(9)	0.191(3318)	non tumor-specific	nAS	yes
MPP4_LS009	chr2:201658518|201675207:-	MPP4	membrane palmitoylated protein 4	protein coding gene	no	ENST00000315506.11;ENST00000396886.7;ENST00000620095.4;ENST00000409143.5	3.027	0.302	0.789	0.02(193)	0.004(3)	0.126(2190)	non tumor-specific	exon_skip	yes
UN_MICA_LS0034	chr6:31411359|31411906:+	MICA	MHC class I polypeptide-related sequence A	protein coding gene	no	.	6.901	0.926	0.000	0.002(20)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_SAMD10_LS0025	chr20:63977390|63978245:-	SAMD10	sterile alpha motif domain containing 10	protein coding gene	no	.	3.946	0.320	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	nAS	no
PARD3_LS004	chr10:34269899|34284135:-	PARD3	par-3 family cell polarity regulator	protein coding gene	no	ENST00000545260.5;ENST00000545693.5;ENST00000374789.7;ENST00000374788.7;ENST00000350537.8;ENST00000374790.7;ENST00000466092.1	30.215	21.379	20.016	0.975(9344)	0.994(698)	0.949(16488)	non tumor-specific	exon_skip	yes
MLF2_LS004	chr12:6748982|6749848:-	MLF2	myeloid leukemia factor 2	protein coding gene	no	ENST00000203630.9;ENST00000435120.5;ENST00000541305.1;ENST00000542154.5;ENST00000539187.5;ENST00000537126.5	607.285	326.743	231.393	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_EPDR1_LS0017	chr7:37715768|37729916:+	EPDR1	ependymin related 1	protein coding gene	no	.	6.166	0.294	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBE2A_LS008	chrX:119581596|119582588:+	UBE2A	ubiquitin conjugating enzyme E2 A	protein coding gene	no	ENST00000371558.6;ENST00000630695.2;ENST00000631185.2;ENST00000629303.2;ENST00000628549.1;ENST00000371569.6	134.706	67.224	62.615	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL357052.1_LS001	chr6:19290595|19320918:-	AL357052.1	-	lncRNA gene	no	ENST00000443504.1	0.121	0.009	0.769	0.007(66)	0.007(5)	0.003(60)	non tumor-specific	nAS	yes
KCNS2_LS001	chr8:98427329|98427938:+	KCNS2	potassium voltage-gated channel modifier subfamily S member 2	protein coding gene	no	ENST00000287042.4	0.092	0.088	0.807	0.024(233)	0.041(29)	0.126(2197)	non tumor-specific	nAS	yes
CCDC144A_LS009	chr17:16707542|16708796:+	CCDC144A	coiled-coil domain containing 144A	protein coding gene	no	ENST00000340621.9;ENST00000399273.5;ENST00000456009.4;ENST00000360524.12;ENST00000360495.9;ENST00000420937.5	0.329	0.055	0.909	0.121(1163)	0.11(77)	0.188(3273)	non tumor-specific	exon_skip	yes
AZI2_LS013	chr3:28340622|28348073:-	AZI2	5-azacytidine induced 2	protein coding gene	no	.;.	1.042	0.256	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_R3HDM4_LS0040	chr19:902067|902242:-	R3HDM4	R3H domain containing 4	protein coding gene	no	.	2.874	0.615	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
WWOX_LS017	chr16:78164289|78386860:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	ENST00000566780.5;ENST00000569332.5;ENST00000566662.5;ENST00000408984.7;ENST00000562639.5	16.707	14.577	7.334	0.95(9105)	0.983(690)	0.958(16644)	non tumor-specific	exon_skip	yes
QSER1_LS017	chr11:32973549|32975248:+	QSER1	glutamine and serine rich 1	protein coding gene	no	ENST00000650167.1;ENST00000399302.7;ENST00000527788.5;ENST00000524678.1	16.139	8.225	9.716	0.963(9226)	0.983(690)	0.962(16713)	non tumor-specific	exon_skip	yes
PRPSAP2_LS036	chr17:18882683|18889822:+	PRPSAP2	phosphoribosyl pyrophosphate synthetase associated protein 2	protein coding gene	no	ENST00000432893.6;ENST00000610773.4;ENST00000414602.5;ENST00000492129.5;ENST00000419071.6;ENST00000487101.5;ENST00000536323.5;ENST00000268835.6;ENST00000412418.5;ENST00000395656.6;ENST00000422237.5;ENST00000542013.5;ENST00000574451.5;ENST00000575337.2	44.537	24.769	25.155	0.992(9500)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_UBXN2B_LS0010	chr8:58416953|58447389:+	UBXN2B	UBX domain protein 2B	protein coding gene	no	.	2.375	0.252	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MDGA1_LS028	chr6:37655896|37658245:-	MDGA1	MAM domain containing glycosylphosphatidylinositol anchor 1	protein coding gene	no	ENST00000434837.7;ENST00000650466.1;ENST00000505425.5;ENST00000478143.2;ENST00000515437.5;ENST00000508399.1	2.857	2.113	4.419	0.722(6914)	0.822(577)	0.888(15431)	non tumor-specific	exon_skip	yes
PTPN22_LS021	chr1:113855049|113856382:-	PTPN22	protein tyrosine phosphatase non-receptor type 22	protein coding gene	no	ENST00000359785.9;ENST00000538253.5;ENST00000528414.5;ENST00000420377.6;ENST00000484147.5	4.213	1.472	1.351	0.431(4133)	0.484(340)	0.444(7710)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PLEKHG3_LS016	chr14:64731169|64731361:+	PLEKHG3	pleckstrin homology and RhoGEF domain containing G3	protein coding gene	no	ENST00000634379.1;ENST00000394691.6;ENST00000247226.12;ENST00000490180.2	26.942	21.534	25.247	0.93(8913)	0.976(685)	0.974(16931)	non tumor-specific	alt_3prime;exon_skip	yes
KCP_LS018	chr7:128884122|128884781:-	KCP	kielin cysteine rich BMP regulator	protein coding gene	no	ENST00000610776.4;ENST00000613019.4;ENST00000611280.4;ENST00000620378.1	6.190	3.525	1.355	0.212(2032)	0.228(160)	0.381(6628)	non tumor-specific	nAS	yes
UN_AC007277.1_UP_LS0006	chr2:170700579|170723504:-	AC007277.1	-	lncRNA gene	no	.	3.682	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
FRMPD2_LS020	chr10:48187292|48192684:-	FRMPD2	FERM and PDZ domain containing 2	protein coding gene	no	ENST00000635925.1;ENST00000637395.1;ENST00000636244.1;ENST00000374201.7;ENST00000305531.3;ENST00000486151.5;ENST00000494505.1	0.741	0.588	1.836	0.127(1213)	0.251(176)	0.194(3375)	non tumor-specific	nAS	yes
SESTD1_LS018	chr2:179172233|179176448:-	SESTD1	SEC14 and spectrin domain containing 1	protein coding gene	no	ENST00000428443.7;ENST00000440010.5;ENST00000435047.5;ENST00000486468.1	19.596	15.347	17.842	0.916(8775)	0.964(677)	0.974(16923)	non tumor-specific	exon_skip	yes
UN_GLT8D1_LS0012	chr3:52696040|52696190:-	GLT8D1	glycosyltransferase 8 domain containing 1	protein coding gene	no	.	2.514	0.490	0.000	0.013(124)	0.011(8)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
SORBS1_LS066	chr10:95416185|95421961:-	SORBS1	sorbin and SH3 domain containing 1	protein coding gene	no	ENST00000474353.6;ENST00000486141.3	1.801	5.528	5.141	0.253(2424)	0.679(477)	0.655(11384)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DYNLL1_LS0001	chr12:120470104|120470492:+	DYNLL1	dynein light chain LC8-type 1	protein coding gene	no	.	2.081	0.537	0.000	0.021(205)	0.019(13)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SPARC_LS010	chr5:151673216|151686865:-	SPARC	secreted protein acidic and cysteine rich	protein coding gene	yes	ENST00000521569.1	0.973	7.115	0.628	0.969(9284)	0.957(672)	0.074(1290)	non tumor-specific	exon_skip	yes
UN_NCOR2_LS0184	chr12:124342006|124342032:+	NCOR2	nuclear receptor corepressor 2	protein coding gene	no	.	1.571	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC104162.1_LS0008	chr3:63784854|63813528:-	AC104162.1	-	pseudogene	no	.	6.196	1.513	0.000	0.001(12)	0.021(15)	0(0)	non tumor-specific	nAS	no
AL157392.3_LS009	chr10:13632825|13644917:+	AL157392.3	-	lncRNA gene	no	ENST00000601758.5;ENST00000596499.5;ENST00000613467.4;ENST00000601758.5;ENST00000596499.5;ENST00000613467.4	0.032	0.164	0.655	0.03(286)	0.036(25)	0.025(442)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CNTN4_LS0038	chr3:2811013|2812852:-	CNTN4	contactin 4	protein coding gene	no	.	1.665	1.032	0.000	0.004(37)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC092164.1_LS0004	chr2:28709499|28731911:-	AC092164.1	-	lncRNA gene	no	.	1.162	0.385	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
ABHD17A_LS004	chr19:1877687|1878664:-	ABHD17A	abhydrolase domain containing 17A, depalmitoylase	protein coding gene	no	ENST00000591351.5;ENST00000592757.1	6.225	3.045	5.123	0.955(9152)	0.954(670)	0.933(16216)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GALNT1_LS013	chr18:35687186|35689173:+	GALNT1	polypeptide N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000589189.5;ENST00000269195.5;ENST00000590654.1	106.899	65.334	32.431	0.984(9430)	0.993(697)	0.979(17010)	non tumor-specific	nAS	yes
UN_SUB1P3_UP_LS0001	chr16:4614842|4675693:-	SUB1P3	SUB1 pseudogene 3	pseudogene	no	.	0.645	0.199	0.000	0.003(30)	0.006(4)	0(0)	non tumor-specific	nAS	no
IQSEC3_LS023	chr12:174910|175217:+	IQSEC3	IQ motif and Sec7 domain ArfGEF 3	protein coding gene	no	ENST00000537151.1	0.470	0.166	0.984	0.085(812)	0.087(61)	0.127(2199)	non tumor-specific	alt_5prime;intron_retention	yes
UN_LINC00486_LS0065	chr2:32878217|32916351:+	LINC00486	long intergenic non-protein coding RNA 486	lncRNA gene	no	.	1379.797	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TNFRSF1B_LS0021	chr1:12194025|12194584:+	TNFRSF1B	TNF receptor superfamily member 1B	protein coding gene	yes	.	2.384	0.516	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_BARX2_LS0008	chr11:129409771|129436751:+	BARX2	BARX homeobox 2	protein coding gene	no	.	3.242	1.821	0.000	0.015(139)	0.046(32)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LINC02241_LS016	chr5:20937257|20937559:+	LINC02241	long intergenic non-protein coding RNA 2241	lncRNA gene	no	ENST00000502427.5	2.987	0.000	0.748	0.02(188)	0(0)	0.001(25)	non tumor-specific	nAS	yes
UN_AC105914.2_UP_LS0005	chr4:174993902|175038569:-	AC105914.2	-	lncRNA gene	no	.	3.145	0.662	0.000	0.004(34)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_SEPT2P1_UP_LS0001	chr1:105664883|105667748:+	SEPT2P1	septin 2 pseudogene 1	pseudogene	no	.	2.020	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ME2P1_UP_LS0008	chr9:30349392|30349484:-	ME2P1	malic enzyme 2 pseudogene 1	pseudogene	no	.	2.496	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
FAM86B3P_LS008	chr8:8235949|8237126:+	FAM86B3P	family with sequence similarity 86 member B3, pseudogene	pseudogene	no	ENST00000588728.5	0.950	0.422	0.994	0.119(1136)	0.15(105)	0.428(7442)	non tumor-specific	nAS	yes
AC114488.2_LS005	chr1:31645341|31651849:+	AC114488.2	-	lncRNA gene	no	ENST00000624388.3	0.030	0.000	0.631	0(1)	0(0)	0.004(75)	non tumor-specific	nAS	yes
UN_ITGB1_LS0036	chr10:32901409|32901454:+	ITGB1	integrin subunit beta 1	protein coding gene	yes	.	34.270	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MICAL1_LS032	chr6:109448879|109449400:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	ENST00000456101.6;ENST00000358577.7;ENST00000358807.7;ENST00000630715.2;ENST00000456101.6;ENST00000358577.7;ENST00000358807.7;ENST00000630715.2	31.542	23.760	47.233	0.981(9397)	0.966(678)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC078927.1_LS0006	chr12:66129113|66138051:-	AC078927.1	-	protein coding gene	no	.	5.955	0.957	0.000	0.006(62)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_COG8_LS0015	chr16:69322809|69325408:-	COG8	component of oligomeric golgi complex 8	protein coding gene	no	.	1.800	0.171	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL024497.2_LS002	chr6:133453662|133456534:-	AL024497.2	-	lncRNA gene	no	ENST00000457081.1	0.766	0.200	0.881	0.014(133)	0.019(13)	0.165(2869)	non tumor-specific	nAS	yes
UN_RNGTT_LS0018	chr6:88667737|88668142:+	RNGTT	RNA guanylyltransferase and 5'-phosphatase	protein coding gene	no	.	1.858	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
KIF20A_LS014	chr5:138184105|138184239:+	KIF20A	kinesin family member 20A	protein coding gene	no	ENST00000394894.7;ENST00000508792.5	34.166	3.901	1.920	0.872(8353)	0.409(287)	0.46(8002)	non tumor-specific	alt_3prime	yes
UN_SLC39A10_LS0039	chr2:195706785|195708662:+	SLC39A10	solute carrier family 39 member 10	protein coding gene	no	.	1.322	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_TIMM10_LS0002	chr11:57528839|57528887:+	TIMM10	translocase of inner mitochondrial membrane 10	protein coding gene	no	.	10.087	0.853	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TPPP3_LS0021	chr16:67390067|67390138:+	TPPP3	tubulin polymerization promoting protein family member 3	protein coding gene	no	.	12.356	1.682	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF83_LS0110	chr19:52613991|52614076:+	ZNF83	zinc finger protein 83	protein coding gene	no	.	2.666	0.343	0.000	0.011(109)	0.006(4)	0(0)	non tumor-specific	nAS	no
SPATA13_LS009	chr13:24160932|24249477:+	SPATA13	spermatogenesis associated 13	lncRNA gene	no	ENST00000382095.8	0.133	0.087	0.718	0.318(3046)	0.43(302)	0.128(2220)	non tumor-specific	nAS	yes
MYEOV_LS013	chr11:69337436|69341510:+	MYEOV	myeloma overexpressed	protein coding gene	no	ENST00000541137.5	0.034	0.010	0.659	0.137(1313)	0.056(39)	0.021(369)	non tumor-specific	nAS	yes
PALM3_LS004	chr19:14056804|14057351:-	PALM3	paralemmin 3	protein coding gene	no	ENST00000340790.8;ENST00000589048.1	4.519	6.634	1.791	0.618(5925)	0.755(530)	0.465(8081)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SMYD3_LS0060	chr1:245929937|245984469:-	SMYD3	SET and MYND domain containing 3	protein coding gene	no	.	4.944	0.357	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
MTHFD1L_LS035	chr6:151015693|151034493:+	MTHFD1L	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein coding gene	no	ENST00000367321.7;ENST00000611279.4;ENST00000618312.4	45.911	11.404	19.605	0.958(9181)	0.902(633)	0.965(16780)	non tumor-specific	exon_skip	yes
MTERF3_LS008	chr8:96251095|96256962:-	MTERF3	mitochondrial transcription termination factor 3	protein coding gene	no	ENST00000523821.5;ENST00000522822.5;ENST00000524341.5;ENST00000287025.3	45.055	19.126	26.100	0.994(9525)	0.997(700)	0.977(16989)	non tumor-specific	alt_3prime;exon_skip	yes
ZMYM5_LS013	chr13:19852190|19862399:-	ZMYM5	zinc finger MYM-type containing 5	protein coding gene	no	ENST00000535942.5;ENST00000337963.8;ENST00000382907.8;ENST00000382905.8;ENST00000467542.5;ENST00000495534.1	1.578	1.359	10.801	0.947(9072)	0.981(689)	0.974(16932)	non tumor-specific	exon_skip	yes
UN_STEAP1B_LS0131	chr7:22510742|22511165:+	STEAP1B	STEAP family member 1B	protein coding gene	no	.	17.903	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
RNF111_LS017	chr15:59091154|59092513:+	RNF111	ring finger protein 111	protein coding gene	yes	ENST00000557998.5;ENST00000561186.5;ENST00000560216.5	4.630	2.152	7.917	0.936(8970)	0.952(668)	0.972(16890)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FADS2_LS0057	chr11:61804993|61809370:+	FADS2	fatty acid desaturase 2	protein coding gene	no	.	0.996	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AP3D1_LS013	chr19:2111828|2113336:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	.;.	2.000	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GID8_LS0035	chr20:62946491|62947660:+	GID8	GID complex subunit 8 homolog	protein coding gene	no	.	3.618	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
MORC3_LS029	chr21:36384829|36386060:+	MORC3	MORC family CW-type zinc finger 3	protein coding gene	no	ENST00000546482.5;ENST00000549948.5;ENST00000551788.5;ENST00000552581.5;ENST00000547657.1	0.599	0.067	0.719	0.006(55)	0.001(1)	0.208(3613)	non tumor-specific	nAS	yes
IMMT_LS022	chr2:86181372|86195338:-	IMMT	inner membrane mitochondrial protein	protein coding gene	no	ENST00000449247.6;ENST00000410111.7;ENST00000442664.6;ENST00000409051.6;ENST00000620815.4;ENST00000474969.5;ENST00000409258.2;ENST00000486633.1	31.414	26.912	27.210	0.962(9217)	0.98(688)	0.978(17006)	non tumor-specific	nAS	yes
CNBD2_LS006	chr20:35980622|35983982:+	CNBD2	cyclic nucleotide binding domain containing 2	protein coding gene	no	ENST00000373973.7;ENST00000349339.5;ENST00000538900.1	2.180	0.171	0.684	0.004(37)	0.006(4)	0.063(1090)	non tumor-specific	exon_skip	yes
UN_STX18_LS0021	chr4:4434858|4437579:-	STX18	syntaxin 18	protein coding gene	no	.	1.952	1.404	0.000	0.009(86)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_AC007405.3_LS0012	chr2:170777177|170777381:+	AC007405.3	-	lncRNA gene	no	.	1.143	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC103809.1_LS001	chr17:74307338|74309269:-	AC103809.1	-	lncRNA gene	no	ENST00000585167.1	0.145	0.051	0.761	0.03(288)	0.051(36)	0.032(553)	non tumor-specific	nAS	yes
LINC01005_LS001	chr7:64027912|64028191:-	LINC01005	long intergenic non-protein coding RNA 1005	lncRNA gene	no	ENST00000441691.1	2.086	0.000	0.557	0(1)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_HEXIM2_LS0007	chr17:45161248|45162747:+	HEXIM2	HEXIM P-TEFb complex subunit 2	protein coding gene	no	.	1.641	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
CHMP3_LS010	chr2:86542312|86561635:-	CHMP3	charged multivesicular body protein 3	protein coding gene	no	ENST00000486404.5	0.077	0.034	0.640	0.798(7644)	0.855(600)	0.005(80)	non tumor-specific	nAS	yes
EXTL1_LS016	chr1:26032485|26033696:+	EXTL1	exostosin like glycosyltransferase 1	protein coding gene	yes	ENST00000470037.1	0.170	0.057	0.734	0.105(1007)	0.105(74)	0.026(448)	non tumor-specific	exon_skip	yes
UN_KLK6_LS0064	chr19:50963549|50968541:-	KLK6	kallikrein related peptidase 6	protein coding gene	yes	.	63.536	4.372	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AEBP2_LS0023	chr12:19456183|19501866:+	AEBP2	AE binding protein 2	protein coding gene	no	.	55.367	11.172	0.000	0.015(140)	0.013(9)	0(0)	non tumor-specific	nAS	no
CRLS1_LS010	chr20:6023422|6026171:+	CRLS1	cardiolipin synthase 1	protein coding gene	no	ENST00000489345.5	3.123	1.565	1.499	0.436(4181)	0.427(300)	0.724(12591)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AL034347.1_UP_LS0008	chr6:83977601|83977697:+	AL034347.1	-	lncRNA gene	no	.	2.548	1.876	0.000	0.017(166)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_RERG_LS0010	chr12:15119278|15121063:-	RERG	RAS like estrogen regulated growth inhibitor	protein coding gene	no	.	3.994	2.218	0.000	0.07(670)	0.179(126)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRRAP_LS059	chr7:98967162|98967485:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1	13.275	6.746	11.608	0.925(8862)	0.962(675)	0.97(16853)	non tumor-specific	nAS	yes
DMPK_LS007	chr19:45771056|45771350:-	DMPK	DM1 protein kinase	protein coding gene	no	ENST00000596686.5;ENST00000600757.5;ENST00000458663.6;ENST00000618091.4	3.452	1.778	37.512	0.943(9037)	0.946(664)	0.977(16985)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PKD1_LS078	chr16:2115625|2115992:-	PKD1	polycystin 1, transient receptor potential channel interacting	protein coding gene	yes	ENST00000262304.8;ENST00000423118.5;ENST00000568591.5	6.112	4.323	8.008	0.759(7270)	0.821(576)	0.931(16184)	non tumor-specific	nAS	yes
LINC00968_LS007	chr8:56520614|56559453:-	LINC00968	long intergenic non-protein coding RNA 968	lncRNA gene	no	ENST00000518943.1	0.113	0.055	0.546	0.014(136)	0.115(81)	0.007(127)	non tumor-specific	nAS	yes
NPHS1_LS014	chr19:35843593|35844103:-	NPHS1	NPHS1 adhesion molecule, nephrin	protein coding gene	no	ENST00000378910.9;ENST00000353632.6	2.970	10.329	1.228	0.045(433)	0.152(107)	0.099(1716)	non tumor-specific	alt_3prime;intron_retention	yes
SNX2_LS012	chr5:122808355|122815896:+	SNX2	sorting nexin 2	protein coding gene	no	ENST00000379516.6;ENST00000512394.5;ENST00000505934.5;ENST00000514949.1;ENST00000510372.5	87.857	72.780	67.217	0.99(9487)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_HERC2P2_LS0011	chr15:22516990|22523042:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	3.224	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FURIN_LS0146	chr15:90882855|90882954:-	FURIN	furin, paired basic amino acid cleaving enzyme	protein coding gene	no	.	2.062	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HLA-U_UP_LS0045	chr6:29889574|29928298:+	HLA-U	major histocompatibility complex, class I, U (pseudogene)	pseudogene	no	.	439.894	15.027	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_WFDC3_LS0020	chr20:45775602|45782955:-	WFDC3	WAP four-disulfide core domain 3	protein coding gene	no	.	1.669	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_CDR2_LS0068	chr16:22422274|22426213:-	CDR2	cerebellar degeneration related protein 2	protein coding gene	no	.	1.751	0.379	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
EP400P1_LS021	chr12:132108682|132114458:+	EP400P1	EP400 pseudogene 1	pseudogene	no	ENST00000446190.5;ENST00000488030.5	0.669	0.385	1.390	0.249(2387)	0.127(89)	0.645(11205)	non tumor-specific	exon_skip	yes
ADGRL2_LS005	chr1:81445089|81580876:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	ENST00000473719.5;ENST00000370721.5;ENST00000370727.5;ENST00000370725.5;ENST00000370723.5;ENST00000370728.5;ENST00000370730.5	1.918	0.810	1.400	0.019(186)	0.093(65)	0.227(3953)	non tumor-specific	exon_skip	yes
UN_DNAJC12_LS0012	chr10:67835525|67837934:-	DNAJC12	DnaJ heat shock protein family (Hsp40) member C12	protein coding gene	no	.	1.854	0.236	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PCDH15_LS033	chr10:53866857|53903243:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000373965.6;ENST00000644397.1;ENST00000614895.4;ENST00000414778.5;ENST00000616114.4;ENST00000621708.4;ENST00000642496.1;ENST00000617271.4;ENST00000409834.5;ENST00000613657.4;ENST00000395445.5;ENST00000395438.5;ENST00000612394.4;ENST00000395432.6;ENST00000617051.4;ENST00000622048.4;ENST00000361849.7;ENST00000395430.5;ENST00000395433.5;ENST00000373956.7;ENST00000373957.7;ENST00000448885.5;ENST00000437009.5;ENST00000463095.2;ENST00000320301.10	4.706	0.629	2.327	0.061(589)	0.073(51)	0.232(4039)	non tumor-specific	exon_skip	yes
ALG9_LS006	chr11:111788569|111809643:-	ALG9	ALG9 alpha-1,2-mannosyltransferase	protein coding gene	no	ENST00000619129.4	0.264	0.390	1.659	0.386(3702)	0.459(322)	0.789(13710)	non tumor-specific	nAS	yes
RNF216_LS031	chr7:5775179|5777487:-	RNF216	ring finger protein 216	protein coding gene	no	ENST00000416985.5	0.473	0.000	0.693	0(2)	0(0)	0.001(23)	non tumor-specific	exon_skip	yes
UN_NSUN2_LS0027	chr5:6631931|6632599:-	NSUN2	NOP2/Sun RNA methyltransferase 2	protein coding gene	no	.	4.092	0.397	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GOLGA2P5_LS0020	chr12:100166633|100167070:-	GOLGA2P5	GOLGA2 pseudogene 5	pseudogene	no	.	3.249	1.617	0.000	0.091(870)	0.114(80)	0(0)	non tumor-specific	nAS	no
UN_TMEM198B_LS0015	chr12:55832287|55832959:+	TMEM198B	transmembrane protein 198B (pseudogene)	pseudogene	no	.	3.278	0.120	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	nAS	no
SNAP25-AS1_LS009	chr20:10196937|10219237:-	SNAP25-AS1	SNAP25 antisense RNA 1	lncRNA gene	no	ENST00000603542.5;ENST00000426491.5;ENST00000451151.5	0.581	0.204	1.604	0.158(1512)	0.071(50)	0.179(3113)	non tumor-specific	nAS	yes
UN_TRHDE_LS0028	chr12:72275273|72286681:+	TRHDE	thyrotropin releasing hormone degrading enzyme	protein coding gene	no	.	1.172	0.266	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
LPGAT1_LS011	chr1:211793190|211829059:-	LPGAT1	lysophosphatidylglycerol acyltransferase 1	protein coding gene	no	ENST00000366997.8;ENST00000366996.1	18.126	12.221	8.549	0.933(8943)	0.979(687)	0.965(16778)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CEP290_LS0039	chr12:88119150|88120114:-	CEP290	centrosomal protein 290	protein coding gene	no	.	1.299	0.387	0.000	0.008(73)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
CADPS_LS005	chr3:62445797|62465367:-	CADPS	calcium dependent secretion activator	protein coding gene	no	ENST00000612439.4;ENST00000383710.8;ENST00000473635.5;ENST00000357948.7;ENST00000613879.4;ENST00000283269.13	10.633	6.023	3.204	0.262(2511)	0.135(95)	0.596(10356)	non tumor-specific	exon_skip	yes
UN_CROCC_LS0048	chr1:16760272|16760358:-	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	3.567	1.236	0.000	0.022(212)	0.034(24)	0(0)	non tumor-specific	nAS	no
TMEM56_LS005	chr1:95140742|95143891:+	TMEM56	TLC domain containing 4	protein coding gene	no	ENST00000463375.1	0.310	0.297	0.831	0.108(1036)	0.175(123)	0.213(3699)	non tumor-specific	nAS	yes
UN_CD58_UP_LS0003	chr1:116666956|116706439:-	CD58	CD58 molecule	protein coding gene	no	.	2.397	0.991	0.000	0.002(20)	0.034(24)	0(0)	non tumor-specific	nAS	no
ITGA3_LS025	chr17:50076681|50077379:+	ITGA3	integrin subunit alpha 3	protein coding gene	yes	.;.;.	38.607	12.836	0.000	0.005(49)	0.011(8)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
COL9A3_LS008	chr20:62819293|62819929:+	COL9A3	collagen type IX alpha 3 chain	protein coding gene	no	ENST00000477612.5;ENST00000649368.1;ENST00000343916.7;ENST00000489045.5;ENST00000452372.2	13.123	4.040	7.866	0.371(3553)	0.407(286)	0.825(14347)	non tumor-specific	exon_skip	yes
UN_ZNF274_LS0021	chr19:58210430|58211560:+	ZNF274	zinc finger protein 274	protein coding gene	no	.	0.886	0.269	0.000	0.108(1036)	0.066(46)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
LRP5_LS016	chr11:68406813|68409914:+	LRP5	LDL receptor related protein 5	protein coding gene	no	ENST00000294304.11;ENST00000529993.5	66.473	53.930	31.774	0.973(9326)	0.993(697)	0.951(16534)	non tumor-specific	nAS	yes
KAT5_LS024	chr11:65718775|65718873:+	KAT5	lysine acetyltransferase 5	protein coding gene	yes	ENST00000533596.1	0.040	0.117	2.780	0.542(5191)	0.551(387)	0.913(15877)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
ELOVL1_LS021	chr1:43365623|43366268:-	ELOVL1	ELOVL fatty acid elongase 1	protein coding gene	no	ENST00000470769.5;ENST00000482302.5;ENST00000479439.5;ENST00000465321.5	0.152	1.124	4.758	0.903(8648)	0.917(644)	0.928(16132)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
AFF1_LS001	chr4:86935240|86948498:+	AFF1	AF4/FMR2 family member 1	protein coding gene	yes	ENST00000504956.5;ENST00000395146.8;ENST00000507468.5;ENST00000503477.5;ENST00000511996.5	2.006	2.266	6.057	0.834(7988)	0.949(666)	0.954(16579)	non tumor-specific	alt_5prime	yes
ZZEF1_LS047	chr17:4081490|4082437:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	ENST00000381638.6;ENST00000574474.1	8.642	8.172	8.885	0.651(6233)	0.836(587)	0.958(16652)	non tumor-specific	nAS	yes
SEZ6L_LS005	chr22:26299169|26305979:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	ENST00000404234.7;ENST00000529632.6;ENST00000360929.7;ENST00000629590.2;ENST00000248933.10;ENST00000343706.8;ENST00000403121.5;ENST00000402979.1	16.683	4.386	3.203	0.15(1435)	0.051(36)	0.281(4881)	non tumor-specific	exon_skip	yes
UN_AC018359.1_UP_LS0002	chr3:34876574|34920828:-	AC018359.1	-	lncRNA gene	no	.	2.181	0.183	0.000	0.017(160)	0.003(2)	0(0)	non tumor-specific	nAS	no
COPA_LS010	chr1:160294593|160294768:-	COPA	COPI coat complex subunit alpha	protein coding gene	no	ENST00000649963.1;ENST00000649676.1;ENST00000368069.7;ENST00000241704.7;ENST00000647693.1;ENST00000650154.1;ENST00000649787.1;ENST00000647799.1;ENST00000648805.1;ENST00000648280.1;ENST00000647683.1;ENST00000649231.1;ENST00000648501.1	286.318	155.464	118.877	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
TEX9_LS005	chr15:56373504|56374154:+	TEX9	testis expressed 9	protein coding gene	no	ENST00000559142.1	0.150	0.065	0.663	0.081(773)	0.114(80)	0.038(656)	non tumor-specific	nAS	yes
UN_MTA2_LS0029	chr11:62597415|62597603:-	MTA2	metastasis associated 1 family member 2	protein coding gene	no	.	8.131	1.019	0.000	0.006(58)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
AC105398.1_LS001	chr2:29097013|29097295:-	AC105398.1	-	lncRNA gene	no	ENST00000446073.1	0.138	0.032	0.775	0(4)	0.001(1)	0.001(16)	non tumor-specific	nAS	yes
UN_VPS4A_LS0006	chr16:69314938|69316008:+	VPS4A	vacuolar protein sorting 4 homolog A	protein coding gene	no	.	3.245	0.199	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6ATAC28P_UP_LS0024	chr14:83282066|83286811:+	RNU6ATAC28P	RNA, U6atac small nuclear 28, pseudogene	small non-coding RNA gene	no	.	4.388	0.329	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MYO18A_LS0090	chr17:29116455|29116960:-	MYO18A	myosin XVIIIA	protein coding gene	no	.	2.118	0.013	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_CEP70_LS0021	chr3:138530732|138531468:-	CEP70	centrosomal protein 70	protein coding gene	no	.	1.143	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC00664_LS008	chr19:21490514|21490801:+	LINC00664	long intergenic non-protein coding RNA 664	lncRNA gene	no	ENST00000596718.5	0.830	0.000	0.652	0.005(51)	0(0)	0.049(855)	non tumor-specific	nAS	yes
UN_AC004889.1_LS0009	chr7:144196978|144207693:+	AC004889.1	-	lncRNA gene	no	.	1.477	1.037	0.000	0.053(512)	0.12(84)	0(0)	non tumor-specific	nAS	no
INPP5F_LS007	chr10:119781242|119781635:+	INPP5F	inositol polyphosphate-5-phosphatase F	protein coding gene	no	ENST00000648621.1;ENST00000647933.1;ENST00000650305.1;ENST00000649454.1	1.239	0.139	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	nAS	yes
FASTKD1_LS006	chr2:169531490|169540051:-	FASTKD1	FAST kinase domains 1	protein coding gene	no	ENST00000490590.5	0.049	0.047	0.804	0.283(2709)	0.217(152)	0.27(4698)	non tumor-specific	exon_skip	yes
ATM_LS088	chr11:108365218|108365325:+	ATM	ATM serine/threonine kinase	protein coding gene	yes	ENST00000278616.8;ENST00000452508.6;ENST00000524792.5;ENST00000525178.5;ENST00000527181.1	24.390	14.482	28.400	0.962(9220)	0.987(693)	0.978(17005)	non tumor-specific	nAS	yes
NFX1_LS016	chr9:33347117|33347663:+	NFX1	nuclear transcription factor, X-box binding 1	protein coding gene	no	ENST00000318524.6	22.333	15.064	19.194	0.98(9388)	0.99(695)	0.978(17004)	non tumor-specific	alt_3prime;exon_skip	yes
LCT_LS009	chr2:135805057|135807128:-	LCT	lactase	protein coding gene	no	ENST00000264162.6;ENST00000452974.1	4.164	2.818	0.766	0.006(54)	0.01(7)	0.033(582)	non tumor-specific	nAS	yes
UN_FUK_LS0005	chr16:70454940|70463173:+	FUK	fucose kinase	protein coding gene	no	.	0.512	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_MAP3K11_LS0117	chr11:65614317|65615120:-	MAP3K11	mitogen-activated protein kinase kinase kinase 11	protein coding gene	no	.	0.351	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_B3GALNT2_LS0030	chr1:235496308|235503690:-	B3GALNT2	beta-1,3-N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	0.692	0.166	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC005520.2_LS002	chr14:73789116|73802885:+	AC005520.2	-	lncRNA gene	no	ENST00000556194.1;ENST00000553470.1	6.021	5.369	7.745	0.885(8479)	0.923(648)	0.963(16744)	non tumor-specific	nAS	yes
HOXA3_LS016	chr7:27140186|27152288:-	HOXA3	homeobox A3	protein coding gene	no	ENST00000518451.1	0.772	0.543	3.648	0.261(2502)	0.527(370)	0.479(8332)	non tumor-specific	nAS	yes
UN_AKR1C2_LS0017	chr10:4998747|4999186:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.	54.076	13.630	0.000	0.048(464)	0.066(46)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
GFM2_LS032	chr5:74763766|74766938:-	GFM2	GTP dependent ribosome recycling factor mitochondrial 2	protein coding gene	no	ENST00000296805.7;ENST00000345239.6;ENST00000427854.6;ENST00000509097.1	6.970	5.254	7.863	0.934(8949)	0.977(686)	0.963(16741)	non tumor-specific	alt_3prime;exon_skip	yes
CXXC4-AS1_LS002	chr4:104643402|104646899:+	CXXC4-AS1	CXXC4 antisense RNA 1	lncRNA gene	no	ENST00000500179.1	0.552	0.000	0.783	0(1)	0(0)	0.042(723)	non tumor-specific	nAS	yes
UN_NBPF1_LS0005	chr1:16565805|16567979:-	NBPF1	NBPF member 1	protein coding gene	no	.	3.098	0.836	0.000	0.003(30)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_PITPNM3_LS0017	chr17:6470408|6471152:-	PITPNM3	PITPNM family member 3	protein coding gene	no	.	1.623	0.647	0.000	0.007(65)	0.014(10)	0(0)	non tumor-specific	alt_5prime	no
TJP3_LS019	chr19:3740763|3743939:+	TJP3	tight junction protein 3	protein coding gene	no	ENST00000541714.6;ENST00000539908.6;ENST00000589378.5;ENST00000587686.1	38.233	39.333	8.649	0.7(6703)	0.94(660)	0.531(9233)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRFN3_LS0030	chr19:35940840|35942695:+	LRFN3	leucine rich repeat and fibronectin type III domain containing 3	protein coding gene	no	.	0.400	0.036	0.000	0.004(40)	0.004(3)	0(0)	non tumor-specific	nAS	no
NCSTN_LS009	chr1:160349122|160349549:+	NCSTN	nicastrin	protein coding gene	no	ENST00000294785.9;ENST00000368063.6;ENST00000421914.5;ENST00000438008.5;ENST00000467837.5;ENST00000491332.1	43.558	32.015	37.231	0.979(9382)	0.99(695)	0.979(17010)	non tumor-specific	alt_3prime	yes
UN_ABCA1_LS0061	chr9:104919836|104922112:+	ABCA1	ATP binding cassette subfamily A member 1	protein coding gene	no	.	4.825	2.511	0.000	0.005(45)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_TMBIM6_LS0180	chr12:49764089|49764254:-	TMBIM6	transmembrane BAX inhibitor motif containing 6	protein coding gene	no	.	13.439	4.215	0.000	0.016(154)	0.003(2)	0(0)	non tumor-specific	nAS	no
CRLF3_LS012	chr17:30793672|30796160:-	CRLF3	cytokine receptor like factor 3	protein coding gene	no	ENST00000324238.6;ENST00000578692.1	21.785	11.021	9.296	0.958(9181)	0.979(687)	0.974(16930)	non tumor-specific	alt_3prime;exon_skip	yes
TRMT9B_LS005	chr8:12952358|12990834:+	TRMT9B	tRNA methyltransferase 9B (putative)	protein coding gene	no	ENST00000528335.5;ENST00000400069.7;ENST00000528753.2;ENST00000532376.2	0.926	0.813	2.057	0.321(3071)	0.615(432)	0.715(12430)	non tumor-specific	exon_skip	yes
FAM20A_LS015	chr17:68540983|68541985:-	FAM20A	FAM20A golgi associated secretory pathway pseudokinase	protein coding gene	no	ENST00000226094.9;ENST00000592847.1	1.246	0.947	1.284	0.266(2550)	0.427(300)	0.458(7956)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FYTTD1_LS015	chr3:197774210|197776927:+	FYTTD1	forty-two-three domain containing 1	protein coding gene	no	ENST00000428738.5;ENST00000415708.6;ENST00000241502.8;ENST00000412924.5;ENST00000418169.5;ENST00000424384.2	75.766	52.012	44.380	0.985(9439)	0.996(699)	0.979(17010)	non tumor-specific	exon_skip	yes
FGFR4_LS030	chr5:177092712|177093332:+	FGFR4	fibroblast growth factor receptor 4	protein coding gene	yes	.;.	2.098	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
MANBA_LS032	chr4:102690771|102714438:-	MANBA	mannosidase beta	protein coding gene	no	ENST00000644159.1;ENST00000226578.9;ENST00000646727.1;ENST00000647097.1;ENST00000644545.1;ENST00000646311.1;ENST00000647129.1;ENST00000642252.1;ENST00000645558.1;ENST00000645348.1;ENST00000505239.1	25.105	17.126	7.971	0.944(9048)	0.984(691)	0.962(16721)	non tumor-specific	exon_skip	yes
SLC4A3_LS023	chr2:219633457|219633855:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	ENST00000425141.5	0.178	0.101	1.233	0.178(1710)	0.121(85)	0.337(5855)	non tumor-specific	alt_3prime;intron_retention	yes
KPNA1_LS003	chr3:122433788|122437170:-	KPNA1	karyopherin subunit alpha 1	protein coding gene	no	ENST00000344337.10;ENST00000470904.5;ENST00000466923.5;ENST00000485027.5;ENST00000494339.5	59.156	33.828	35.164	0.992(9507)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC008397.2_LS0005	chr19:18250472|18255220:-	AC008397.2	-	protein coding gene	no	.	3.759	2.220	0.000	0.017(164)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
TBCE_LS027	chr1:235414618|235419417:+	TBCE	tubulin folding cofactor E	protein coding gene	no	ENST00000647428.1;ENST00000646528.1	5.888	2.878	1.599	0.572(5484)	0.507(356)	0.737(12802)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MICAL1_LS004	chr6:109445290|109445416:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	ENST00000456101.6;ENST00000358577.7;ENST00000358807.7;ENST00000465904.1;ENST00000630715.2	74.347	49.155	115.388	0.989(9473)	0.972(682)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_SELPLG_LS0037	chr12:108623617|108623708:-	SELPLG	selectin P ligand	protein coding gene	no	.	22.283	4.734	0.000	0.016(153)	0.019(13)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UVRAG-DT_LS001	chr11:75803517|75811424:-	UVRAG-DT	UVRAG divergent transcript	lncRNA gene	no	ENST00000533945.5;ENST00000533590.5	0.138	0.000	0.619	0.002(18)	0.001(1)	0.01(172)	non tumor-specific	nAS	yes
CRYBG2_LS023	chr1:26343293|26343745:-	CRYBG2	crystallin beta-gamma domain containing 2	protein coding gene	no	ENST00000475866.3;ENST00000308182.9;ENST00000527815.6	6.754	8.097	6.765	0.377(3610)	0.258(181)	0.263(4569)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MAZ_LS022	chr16:29810227|29811006:+	MAZ	MYC associated zinc finger protein	protein coding gene	no	ENST00000568411.5;ENST00000568411.5	0.095	0.091	1.635	0.819(7850)	0.745(523)	0.779(13545)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
INTS11_LS012	chr1:1312700|1312787:-	INTS11	integrator complex subunit 11	protein coding gene	no	ENST00000470030.6;ENST00000540437.5;ENST00000545578.5;ENST00000620829.4;ENST00000435064.5;ENST00000323275.10;ENST00000411962.5;ENST00000462432.5;ENST00000421495.6;ENST00000458452.7;ENST00000419704.5;ENST00000532772.5;ENST00000450926.6;ENST00000527098.5;ENST00000485710.5;ENST00000528879.5	64.202	34.812	146.961	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
STARD5_LS001	chr15:81309533|81309771:-	STARD5	StAR related lipid transfer domain containing 5	protein coding gene	no	ENST00000560916.1	0.275	0.204	2.213	0.595(5701)	0.593(416)	0.753(13094)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC015845.2_LS0008	chr17:57772196|57827522:-	AC015845.2	-	lncRNA gene	no	.	2.072	0.748	0.000	0.002(20)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_MIR5589_UP_LS0004	chr19:10037736|10037873:+	MIR5589	microRNA 5589	small non-coding RNA gene	no	.	3.371	0.815	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
DNAH8_LS078	chr6:38929666|38931811:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000449981.6;ENST00000359357.7	9.077	0.446	0.882	0.014(135)	0.006(4)	0.032(560)	non tumor-specific	nAS	yes
GGT5_LS007	chr22:24220491|24224996:-	GGT5	gamma-glutamyltransferase 5	protein coding gene	no	.;.	5.699	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ATRX_LS032	chrX:77652353|77654098:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000373344.10;ENST00000395603.7;ENST00000480283.5	19.322	14.564	11.043	0.838(8029)	0.949(666)	0.968(16823)	non tumor-specific	nAS	yes
NCOA6_LS014	chr20:34740517|34742724:-	NCOA6	nuclear receptor coactivator 6	protein coding gene	no	.;.	3.671	0.569	0.000	0.009(91)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
EEPD1_LS007	chr7:36287777|36296993:+	EEPD1	endonuclease/exonuclease/phosphatase family domain containing 1	protein coding gene	no	ENST00000242108.8;ENST00000534978.1;ENST00000487069.5;ENST00000468591.1	34.271	17.841	24.649	0.992(9505)	0.997(700)	0.978(17002)	non tumor-specific	exon_skip	yes
DNAH9_LS050	chr17:11822062|11822438:+	DNAH9	dynein axonemal heavy chain 9	protein coding gene	no	ENST00000262442.8;ENST00000454412.6	2.523	2.864	0.978	0.031(295)	0.097(68)	0.122(2125)	non tumor-specific	nAS	yes
CYP3A5_LS012	chr7:99666689|99666952:-	CYP3A5	cytochrome P450 family 3 subfamily A member 5	protein coding gene	no	ENST00000222982.8;ENST00000469887.5;ENST00000461920.5;ENST00000646887.1;ENST00000339843.6;ENST00000481825.5;ENST00000466061.5	23.596	25.135	6.502	0.442(4231)	0.692(486)	0.626(10881)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PCYT1A_LS004	chr3:196238894|196239547:-	PCYT1A	phosphate cytidylyltransferase 1, choline, alpha	protein coding gene	no	ENST00000419333.5;ENST00000292823.6;ENST00000431016.5;ENST00000460827.1	44.386	27.288	44.633	0.987(9459)	0.981(689)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_PDHX_LS0014	chr11:34976900|34978124:+	PDHX	pyruvate dehydrogenase complex component X	protein coding gene	no	.	9.401	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR2052HG_LS0045	chr8:74753047|74770675:+	MIR2052HG	MIR2052 host gene	lncRNA gene	no	.	3.801	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
MECOM_LS014	chr3:169112874|169115383:-	MECOM	MDS1 and EVI1 complex locus	protein coding gene	yes	ENST00000264674.7;ENST00000628990.2;ENST00000464456.5;ENST00000472280.5;ENST00000494292.5;ENST00000468789.5;ENST00000460814.5;ENST00000433243.6;ENST00000492586.1	15.901	18.913	6.074	0.804(7707)	0.889(624)	0.87(15115)	non tumor-specific	exon_skip	yes
TLN2_LS037	chr15:62748444|62750402:+	TLN2	talin 2	protein coding gene	no	ENST00000561311.5;ENST00000636159.1;ENST00000494733.5;ENST00000489129.5	7.220	10.507	7.931	0.745(7134)	0.795(558)	0.909(15795)	non tumor-specific	exon_skip	yes
FNDC3B_LS005	chr3:172040624|172112452:+	FNDC3B	fibronectin type III domain containing 3B	protein coding gene	yes	ENST00000336824.8;ENST00000423424.5;ENST00000336824.8;ENST00000423424.5	3.407	2.723	3.234	0.867(8311)	0.905(635)	0.812(14115)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FBXO31_LS004	chr16:87335457|87336155:-	FBXO31	F-box protein 31	protein coding gene	yes	ENST00000311635.11;ENST00000618298.6	27.334	22.218	36.371	0.971(9306)	0.993(697)	0.978(17006)	non tumor-specific	alt_5prime	yes
UN_GLYR1_LS0035	chr16:4811802|4811915:-	GLYR1	glyoxylate reductase 1 homolog	protein coding gene	no	.	10.864	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MOB2_LS004	chr11:1480885|1481220:-	MOB2	MOB kinase activator 2	protein coding gene	no	ENST00000529897.1	0.032	0.059	1.311	0.614(5882)	0.725(509)	0.31(5385)	non tumor-specific	alt_5prime	yes
UN_AC009869.1_UP_LS0009	chr11:15847381|15855609:+	AC009869.1	-	lncRNA gene	no	.	3.334	3.314	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
NOTCH3_LS035	chr19:15189174|15189273:-	NOTCH3	notch receptor 3	protein coding gene	yes	ENST00000263388.6;ENST00000601011.1	52.035	27.442	30.000	0.895(8572)	0.932(654)	0.938(16300)	non tumor-specific	exon_skip	yes
CCDC116_LS004	chr22:21634570|21634685:+	CCDC116	coiled-coil domain containing 116	protein coding gene	no	ENST00000607942.5;ENST00000292779.3	0.751	0.094	1.094	0.017(167)	0.014(10)	0.543(9431)	non tumor-specific	nAS	yes
AL357153.3_LS003	chr14:70597777|70633762:-	AL357153.3	-	lncRNA gene	no	ENST00000553982.1	1.700	0.748	0.695	0.212(2034)	0.204(143)	0.048(833)	non tumor-specific	nAS	yes
NEDD4_LS042	chr15:55988001|55993511:-	NEDD4	NEDD4 E3 ubiquitin protein ligase	protein coding gene	yes	ENST00000557845.1	0.177	0.085	0.670	0.221(2121)	0.242(170)	0.142(2474)	non tumor-specific	exon_skip	yes
TNFRSF10C_LS005	chr8:23115616|23116641:+	TNFRSF10C	TNF receptor superfamily member 10c	protein coding gene	no	ENST00000356864.3;ENST00000517558.1;ENST00000518135.1	7.911	5.077	2.919	0.795(7613)	0.876(615)	0.849(14750)	non tumor-specific	nAS	yes
UN_ZNF595_LS0023	chr4:86211|86632:-	ZNF595	zinc finger protein 595	protein coding gene	no	.	1.965	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
NXF2_LS001	chrX:102247238|102248437:+	NXF2	nuclear RNA export factor 2	protein coding gene	no	ENST00000625106.3	1.840	0.000	0.591	0.026(247)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_MISP_LS0058	chr19:758053|758152:-	MISP	mitotic spindle positioning	protein coding gene	no	.	1.593	4.505	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MAN1A1_LS0033	chr6:119349287|119349522:-	MAN1A1	mannosidase alpha class 1A member 1	protein coding gene	no	.	1.545	1.168	0.000	0.019(186)	0.044(31)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_LINC01891_LS0002	chr2:234447785|234454485:-	LINC01891	long intergenic non-protein coding RNA 1891	lncRNA gene	no	.	1.726	0.836	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01948_UP_LS0006	chr5:56490269|56504791:-	LINC01948	long intergenic non-protein coding RNA 1948	lncRNA gene	no	.	4.449	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCA5_LS013	chr4:143538938|143540363:+	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein coding gene	no	ENST00000283131.3	101.353	65.850	37.693	0.986(9447)	0.997(700)	0.979(17010)	non tumor-specific	exon_skip	yes
UN_NKAIN4_LS0028	chr20:63247775|63248515:-	NKAIN4	sodium/potassium transporting ATPase interacting 4	protein coding gene	no	.	2.749	0.538	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
RNF213_LS016	chr17:80306468|80307128:+	RNF213	ring finger protein 213	protein coding gene	no	ENST00000508628.6;ENST00000582970.5;ENST00000319921.4;ENST00000559070.5	14.306	7.288	7.427	0.904(8657)	0.934(656)	0.966(16792)	non tumor-specific	alt_3prime;exon_skip	yes
FAM156B_LS012	chrX:52899541|52900568:+	FAM156B	family with sequence similarity 156 member B	protein coding gene	no	ENST00000610405.4;ENST00000619346.4;ENST00000610609.4;ENST00000612188.4;ENST00000593751.7;ENST00000416841.6	15.704	7.298	0.758	0.99(9483)	0.984(691)	0.328(5707)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MUC20-OT1_UP_LS0011	chr3:195640406|195651405:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	.	0.509	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CBFA2T3_LS0033	chr16:88885261|88885961:-	CBFA2T3	CBFA2/RUNX1 partner transcriptional co-repressor 3	protein coding gene	yes	.	4.718	0.690	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RGS19_LS008	chr20:64076954|64079294:-	RGS19	regulator of G protein signaling 19	protein coding gene	no	ENST00000395042.1;ENST00000493165.1	4.873	2.070	2.486	0.866(8297)	0.876(615)	0.837(14552)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPS8_LS0025	chr1:44778152|44778576:+	RPS8	ribosomal protein S8	protein coding gene	no	.	489.660	99.395	0.000	0.046(438)	0.019(13)	0(0)	non tumor-specific	alt_5prime	no
UN_CLDN4_LS0234	chr7:73832257|73832298:+	CLDN4	claudin 4	protein coding gene	no	.	110.283	15.621	0.000	0.008(77)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
CDC42EP2_LS004	chr11:65317242|65320544:+	CDC42EP2	CDC42 effector protein 2	protein coding gene	no	ENST00000533419.1	0.071	0.039	0.632	0.236(2263)	0.348(244)	0.016(283)	non tumor-specific	alt_5prime	yes
UN_STAT6_LS0082	chr12:57096654|57096708:-	STAT6	signal transducer and activator of transcription 6	protein coding gene	no	.	14.026	3.192	0.000	0.009(82)	0.017(12)	0(0)	non tumor-specific	intron_retention	no
UN_OGA_LS0026	chr10:101791091|101791354:-	OGA	O-GlcNAcase	protein coding gene	no	.	8.720	0.235	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL121949.2_UP_LS0011	chr6:63425802|63441304:-	AL121949.2	-	pseudogene	no	.	4.959	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
SLC37A3_LS005	chr7:140335439|140337284:-	SLC37A3	solute carrier family 37 member 3	protein coding gene	no	ENST00000498469.5	0.014	0.088	1.030	0.449(4304)	0.405(284)	0.568(9878)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL132671.2_LS0003	chr6:117326414|117327379:-	AL132671.2	-	protein coding gene	no	.	2.713	0.580	0.000	0.016(151)	0.053(37)	0(0)	non tumor-specific	nAS	no
VIT_LS012	chr2:36775067|36781727:+	VIT	vitrin	protein coding gene	no	ENST00000379242.7	2.197	1.924	4.987	0.077(740)	0.363(255)	0.673(11701)	non tumor-specific	exon_skip	yes
SURF4_LS011	chr9:133367445|133375239:-	SURF4	surfeit 4	protein coding gene	no	ENST00000618229.4;ENST00000618229.4	0.178	1.292	0.657	0.29(2779)	0.276(194)	0.158(2742)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_SIPA1_LS0051	chr11:65649672|65649762:+	SIPA1	signal-induced proliferation-associated 1	protein coding gene	no	.	15.885	3.286	0.000	0.029(274)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
TBC1D30_LS012	chr12:64828509|64830377:+	TBC1D30	TBC1 domain family member 30	protein coding gene	no	ENST00000544190.6;ENST00000542120.5;ENST00000539867.5;ENST00000539120.1	3.592	2.611	2.092	0.659(6313)	0.782(549)	0.737(12809)	non tumor-specific	exon_skip	yes
UN_NFIX_LS0153	chr19:13098516|13098553:-	NFIX	nuclear factor I X	protein coding gene	no	.	5.320	0.826	0.000	0.008(74)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL732372.2_LS0014	chr1:494872|498089:-	AL732372.2	-	pseudogene	no	.	3.614	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLGRKT_UP_LS0040	chr9:5600829|5628790:-	PLGRKT	plasminogen receptor with a C-terminal lysine	protein coding gene	no	.	2.279	0.342	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MROH1_LS0060	chr8:144217748|144218282:+	MROH1	maestro heat like repeat family member 1	protein coding gene	no	.	1.217	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip	no
PCAT14_LS002	chr22:23538838|23544228:+	PCAT14	prostate cancer associated transcript 14	lncRNA gene	no	ENST00000626825.1	1.808	0.261	0.832	0.088(843)	0.147(103)	0.049(847)	non tumor-specific	nAS	yes
UN_ANAPC7_LS0034	chr12:110396452|110402723:-	ANAPC7	anaphase promoting complex subunit 7	protein coding gene	no	.	3.431	1.358	0.000	0.037(351)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC126768.1_UP_LS0021	chr5:2328814|2334725:-	AC126768.1	-	lncRNA gene	no	.	10.677	0.314	0.000	0.019(179)	0.05(35)	0(0)	non tumor-specific	nAS	no
PTPRM_LS035	chr18:8343520|8370890:+	PTPRM	protein tyrosine phosphatase receptor type M	protein coding gene	no	ENST00000580170.5;ENST00000332175.12;ENST00000400053.8;ENST00000400060.8;ENST00000577827.5	31.359	29.262	43.817	0.912(8740)	0.986(692)	0.957(16640)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM132A_LS003	chr11:60924733|60926579:+	TMEM132A	transmembrane protein 132A	protein coding gene	no	ENST00000537065.1	0.197	0.162	0.797	0.399(3825)	0.138(97)	0.191(3312)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PECAM1_LS019	chr17:64390515|64390602:-	PECAM1	platelet and endothelial cell adhesion molecule 1	protein coding gene	no	ENST00000563924.5;ENST00000564866.5;ENST00000569967.1	39.145	57.629	43.772	0.949(9096)	0.984(691)	0.954(16584)	non tumor-specific	nAS	yes
FAM13B_LS004	chr5:137943216|137945902:-	FAM13B	family with sequence similarity 13 member B	protein coding gene	no	ENST00000033079.7;ENST00000425075.6;ENST00000420893.6;ENST00000513640.1	21.754	21.214	21.698	0.971(9302)	0.984(691)	0.978(16999)	non tumor-specific	alt_3prime;exon_skip	yes
ORMDL2_LS008	chr12:55818112|55819342:+	ORMDL2	ORMDL sphingolipid biosynthesis regulator 2	protein coding gene	no	ENST00000550836.1;ENST00000550836.1	1.334	0.676	1.388	0.83(7948)	0.87(611)	0.664(11533)	non tumor-specific	alt_3prime;exon_skip	yes
EVX1_LS001	chr7:27243402|27244467:+	EVX1	even-skipped homeobox 1	protein coding gene	no	ENST00000580535.1	0.446	0.168	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_NLK_LS0005	chr17:28041779|28043276:+	NLK	nemo like kinase	protein coding gene	no	.	1.064	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
KCNK12_LS002	chr2:47543801|47569941:-	KCNK12	potassium two pore domain channel subfamily K member 12	protein coding gene	no	ENST00000493527.1	0.327	0.038	0.766	0.035(335)	0.004(3)	0.017(289)	non tumor-specific	nAS	yes
UN_AC011447.3_LS0113	chr19:20228483|20237778:-	AC011447.3	-	lncRNA gene	no	.	2.282	0.116	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
BTBD2_LS015	chr19:1993176|1997344:-	BTBD2	BTB domain containing 2	protein coding gene	no	ENST00000255608.8;ENST00000587825.1;ENST00000589200.2;ENST00000590646.5;ENST00000587742.5	112.108	66.700	98.441	0.994(9527)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
C3orf85_LS005	chr3:109136896|109149805:+	C3orf85	chromosome 3 open reading frame 85	protein coding gene	no	ENST00000477643.6	0.658	2.885	6.886	0.095(908)	0.245(172)	0.05(870)	non tumor-specific	nAS	yes
THAP4_LS012	chr2:241634079|241636941:-	THAP4	THAP domain containing 4	protein coding gene	no	ENST00000407315.5	11.905	10.593	33.492	0.989(9474)	0.991(696)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
WDPCP_LS007	chr2:63259409|63313248:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000272321.11;ENST00000409199.5;ENST00000409120.5;ENST00000398544.7	4.968	2.567	3.332	0.784(7514)	0.788(553)	0.917(15938)	non tumor-specific	exon_skip	yes
UN_AC097063.1_UP_LS0003	chr1:65645344|65647455:-	AC097063.1	-	pseudogene	no	.	2.016	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TTC6_LS014	chr14:37739155|37748939:+	TTC6	tetratricopeptide repeat domain 6	protein coding gene	no	ENST00000553443.5	3.007	1.064	1.476	0.098(939)	0.145(102)	0.149(2595)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_ANKRD36_LS0036	chr2:97207839|97209681:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	.	6.256	0.220	0.000	0.011(102)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SON_LS005	chr21:33555391|33557156:+	SON	SON DNA and RNA binding protein	protein coding gene	no	ENST00000356577.8;ENST00000300278.8;ENST00000455528.5;ENST00000381679.8;ENST00000436227.5;ENST00000421541.1	96.193	71.602	122.722	0.993(9512)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
IGHM_LS003	chr14:105854737|105854917:-	IGHM	immunoglobulin heavy constant mu	no	no	ENST00000637539.2;ENST00000390559.6	158.038	48.875	8.160	0.913(8745)	0.966(678)	0.896(15577)	non tumor-specific	nAS	yes
UN_USF2_LS0091	chr19:35279556|35279647:-	USF2	upstream transcription factor 2, c-fos interacting	protein coding gene	no	.	9.377	0.216	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
VPS13A_LS072	chr9:77371149|77381976:+	VPS13A	vacuolar protein sorting 13 homolog A	protein coding gene	no	ENST00000376634.8;ENST00000376636.7;ENST00000360280.7;ENST00000357409.9;ENST00000645632.1;ENST00000643348.1;ENST00000644843.1	21.832	15.214	26.180	0.91(8720)	0.959(673)	0.975(16939)	non tumor-specific	exon_skip	yes
UN_SDF4_LS0038	chr1:1217601|1228820:+	SDF4	stromal cell derived factor 4	protein coding gene	no	.	2.495	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CCNB3_LS015	chrX:50347775|50351241:+	CCNB3	cyclin B3	protein coding gene	no	ENST00000376042.5;ENST00000376038.5;ENST00000476167.5;ENST00000276014.11;ENST00000348603.2;ENST00000487204.1	1.133	0.459	1.448	0.397(3807)	0.321(225)	0.66(11480)	non tumor-specific	nAS	yes
UN_FBXO41_LS0038	chr2:73269768|73271166:-	FBXO41	F-box protein 41	protein coding gene	no	.	0.417	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SUPT4H1_LS006	chr17:58347584|58351402:-	SUPT4H1	SPT4 homolog, DSIF elongation factor subunit	protein coding gene	no	ENST00000225504.7;ENST00000577396.5;ENST00000581540.5;ENST00000580947.1;ENST00000579289.1;ENST00000225504.7;ENST00000577396.5;ENST00000581540.5;ENST00000580947.1;ENST00000579289.1	222.266	120.476	140.599	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ZFPM2-AS1_LS010	chr8:105798442|105927642:-	ZFPM2-AS1	ZFPM2 antisense RNA 1	lncRNA gene	no	ENST00000509144.2	0.933	0.174	0.677	0.252(2411)	0.081(57)	0.009(156)	non tumor-specific	nAS	yes
TNS3_LS026	chr7:47428376|47435282:-	TNS3	tensin 3	protein coding gene	no	ENST00000311160.13;ENST00000457718.5;ENST00000450444.5;ENST00000442536.6;ENST00000458317.6;ENST00000415929.5	18.647	16.558	8.498	0.869(8322)	0.962(675)	0.948(16474)	non tumor-specific	exon_skip	yes
CYP4F22_LS012	chr19:15549202|15550674:+	CYP4F22	cytochrome P450 family 4 subfamily F member 22	protein coding gene	no	ENST00000269703.7;ENST00000601005.2	13.372	9.608	2.396	0.209(1999)	0.405(284)	0.4(6951)	non tumor-specific	nAS	yes
CNPY3_LS012	chr6:42935670|42937717:+	CNPY3	canopy FGF signaling regulator 3	protein coding gene	no	ENST00000394142.7;ENST00000372836.4;ENST00000394142.7;ENST00000372836.4	190.345	78.943	92.977	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CELSR3_LS022	chr3:48650581|48650892:-	CELSR3	cadherin EGF LAG seven-pass G-type receptor 3	protein coding gene	no	ENST00000164024.4	4.052	1.565	1.516	0.347(3326)	0.047(33)	0.68(11813)	non tumor-specific	exon_skip	yes
UN_AL357140.2_UP_LS0009	chr1:9921144|9930144:+	AL357140.2	-	lncRNA gene	no	.	2.981	0.537	0.000	0.01(99)	0.011(8)	0(0)	non tumor-specific	nAS	no
BCL11A_LS023	chr2:60544391|60545971:-	BCL11A	BAF chromatin remodeling complex subunit BCL11A	protein coding gene	yes	ENST00000489183.1	0.479	0.252	0.779	0.162(1554)	0.134(94)	0.123(2140)	non tumor-specific	intron_retention	yes
IFNGR1_LS001	chr6:137198639|137200881:-	IFNGR1	interferon gamma receptor 1	protein coding gene	no	ENST00000367739.8;ENST00000643119.1;ENST00000645045.1;ENST00000647124.1;ENST00000642390.1;ENST00000645753.1;ENST00000646036.1;ENST00000646898.1;ENST00000644894.1	144.316	114.558	87.495	0.994(9519)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC090796.1_LS0002	chr8:57492975|57502058:+	AC090796.1	-	lncRNA gene	no	.	1.094	0.874	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_LY6E_LS0041	chr8:143021591|143022277:-	LY6E	lymphocyte antigen 6 family member E	protein coding gene	no	.	9.130	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DST_LS054	chr6:56536940|56540280:-	DST	dystonin	protein coding gene	no	ENST00000340834.9	2.399	4.385	3.891	0.674(6458)	0.897(630)	0.798(13875)	non tumor-specific	nAS	yes
CRB3_LS003	chr19:6464783|6465545:+	CRB3	crumbs cell polarity complex component 3	protein coding gene	no	ENST00000598494.5;ENST00000600229.5;ENST00000356762.7;ENST00000308243.7	44.639	35.196	4.516	0.847(8118)	0.966(678)	0.657(11418)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DDR1_LS015	chr6:30883165|30884538:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	ENST00000504651.5	0.810	0.381	0.759	0.332(3183)	0.369(259)	0.114(1985)	non tumor-specific	exon_skip;mutex_exons	yes
BRINP3_LS006	chr1:190265055|190281560:-	BRINP3	BMP/retinoic acid inducible neural specific 3	protein coding gene	no	ENST00000367462.4;ENST00000631494.1	12.803	3.824	3.785	0.153(1466)	0.403(283)	0.404(7025)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RRM2B_LS0001	chr8:102205959|102208095:-	RRM2B	ribonucleotide reductase regulatory TP53 inducible subunit M2B	protein coding gene	no	.	2.873	0.227	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AGTRAP_LS0028	chr1:11750230|11750390:-	AGTRAP	angiotensin II receptor associated protein	protein coding gene	no	.	1.605	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKAA2_LS0008	chr1:56645995|56674381:+	PRKAA2	protein kinase AMP-activated catalytic subunit alpha 2	protein coding gene	yes	.	0.998	0.403	0.000	0.009(90)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_NFE2L1_LS0236	chr17:48059917|48060642:+	NFE2L1	nuclear factor, erythroid 2 like 1	protein coding gene	no	.	9.431	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00096_UP_LS0042	chr10:5123820|5135848:-	RF00096	-	small non-coding RNA gene	no	.	5.713	0.485	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF655_LS021	chr7:99562494|99563188:+	ZNF655	zinc finger protein 655	protein coding gene	no	ENST00000416144.5;ENST00000423973.5	0.211	0.316	1.575	0.461(4418)	0.521(366)	0.737(12815)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TANK_LS034	chr2:161179761|161202863:+	TANK	TRAF family member associated NFKB activator	protein coding gene	yes	ENST00000441987.5	0.080	0.178	0.865	0.433(4147)	0.507(356)	0.398(6913)	non tumor-specific	exon_skip	yes
TECR_LS037	chr19:14565290|14565618:+	TECR	trans-2,3-enoyl-CoA reductase	protein coding gene	no	ENST00000215567.9;ENST00000642961.1;ENST00000600083.5;ENST00000598987.5;ENST00000598333.5;ENST00000597607.5;ENST00000596073.6;ENST00000600395.5;ENST00000601187.1;ENST00000601350.5;ENST00000599101.5;ENST00000593775.5;ENST00000594958.1	281.203	150.701	276.998	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC244250.1_UP_LS0051	chr22:22698361|22871965:-	AC244250.1	-	lncRNA gene	no	.	34.202	2.175	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
EME1_LS007	chr17:50376193|50378595:+	EME1	essential meiotic structure-specific endonuclease 1	protein coding gene	no	ENST00000393271.6;ENST00000338165.8;ENST00000511648.6;ENST00000513077.1	2.637	0.293	1.128	0.732(7015)	0.221(155)	0.512(8892)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ABCG2_LS0020	chr4:88202857|88210449:-	ABCG2	ATP binding cassette subfamily G member 2 (Junior blood group)	protein coding gene	yes	.	1.381	0.308	0.000	0.004(40)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
GNAO1_LS007	chr16:56235384|56275931:+	GNAO1	G protein subunit alpha o1	protein coding gene	no	ENST00000565363.5;ENST00000638185.1	2.078	1.481	0.923	0.011(109)	0.071(50)	0.039(670)	non tumor-specific	exon_skip	yes
UN_F8_LS0008	chrX:154863227|154884846:-	F8	coagulation factor VIII	protein coding gene	no	.	0.894	0.061	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL591684.2_LS0018	chr10:47530523|47542167:-	AL591684.2	-	lncRNA gene	no	.	1.384	0.300	0.000	0.013(125)	0.011(8)	0(0)	non tumor-specific	nAS	no
MBP_LS047	chr18:77017268|77066298:-	MBP	proteoglycan 2, pro eosinophil major basic protein	protein coding gene	no	ENST00000355994.6;ENST00000580402.5;ENST00000579129.5;ENST00000397863.5;ENST00000397860.7;ENST00000581878.5;ENST00000487778.5;ENST00000490754.5;ENST00000495162.5;ENST00000497479.1	13.224	8.714	11.402	0.937(8976)	0.983(690)	0.96(16679)	non tumor-specific	exon_skip;mutex_exons	yes
ADORA1_LS008	chr1:203128432|203165261:+	ADORA1	adenosine A1 receptor	protein coding gene	no	ENST00000618295.1	0.238	0.111	0.773	0.025(244)	0.014(10)	0.006(100)	non tumor-specific	nAS	yes
ITGAM_LS020	chr16:31321371|31321464:+	ITGAM	integrin subunit alpha M	protein coding gene	no	ENST00000648685.1;ENST00000544665.8;ENST00000287497.13	10.705	5.870	4.652	0.56(5367)	0.628(441)	0.888(15433)	non tumor-specific	exon_skip	yes
UN_HEXIM1_LS0018	chr17:45149257|45149424:-	HEXIM1	HEXIM P-TEFb complex subunit 1	protein coding gene	no	.	1.096	0.401	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCAT1_LS025	chr8:127006618|127064048:+	PCAT1	prostate cancer associated transcript 1	lncRNA gene	yes	ENST00000645198.1;ENST00000644627.1;ENST00000643594.1;ENST00000644733.1	3.851	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	yes
UCA1_LS009	chr19:15835114|15835188:+	UCA1	urothelial cancer associated 1	lncRNA gene	yes	ENST00000645221.1	1.577	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	nAS	yes
ABCA5_LS046	chr17:69314430|69317705:-	ABCA5	ATP binding cassette subfamily A member 5	protein coding gene	no	ENST00000588665.5	0.099	0.137	0.720	0.127(1215)	0.278(195)	0.205(3572)	non tumor-specific	exon_skip	yes
UBC_LS026	chr12:124912278|124913191:-	UBC	ubiquitin C	protein coding gene	no	.;.;.	194.922	35.406	0.000	0.091(868)	0.044(31)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_PPP1R13L_LS0043	chr19:45395693|45396560:+	PPP1R13L	protein phosphatase 1 regulatory subunit 13 like	protein coding gene	yes	.	1.241	0.799	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PDZRN3_LS0030	chr3:73602461|73624103:-	PDZRN3	PDZ domain containing ring finger 3	protein coding gene	no	.	0.883	0.864	0.000	0.021(201)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
MYH14_LS034	chr19:50268367|50271409:+	MYH14	myosin heavy chain 14	protein coding gene	no	ENST00000598205.5;ENST00000425460.5;ENST00000376970.6;ENST00000642316.1;ENST00000599920.5;ENST00000601313.6;ENST00000596571.5;ENST00000262269.12	76.452	70.912	22.090	0.883(8460)	0.972(682)	0.868(15087)	non tumor-specific	alt_3prime	yes
UN_BASP1_LS0035	chr5:17143771|17144777:+	BASP1	brain abundant membrane attached signal protein 1	protein coding gene	yes	.	1.905	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SH3RF2_LS013	chr5:146056213|146062426:+	SH3RF2	SH3 domain containing ring finger 2	protein coding gene	no	.;.	1.381	0.373	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
RGS18_LS001	chr1:192158526|192158631:+	RGS18	regulator of G protein signaling 18	protein coding gene	no	ENST00000481707.5	0.666	0.050	0.985	0.013(129)	0.003(2)	0.099(1727)	non tumor-specific	intron_retention	yes
UN_MIR4435-2HG_LS0011	chr2:111208661|111248148:-	MIR4435-2HG	MIR4435-2 host gene	lncRNA gene	no	.	1.907	0.183	0.000	0.007(65)	0.004(3)	0(0)	non tumor-specific	nAS	no
PPP6C_LS008	chr9:125171180|125188919:-	PPP6C	protein phosphatase 6 catalytic subunit	protein coding gene	no	ENST00000451402.5	0.515	1.321	1.285	0.609(5838)	0.805(565)	0.694(12056)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GSTA7P_UP_LS0007	chr6:52750657|52791881:-	GSTA7P	glutathione S-transferase alpha 7, pseudogene	pseudogene	no	.	12.991	11.766	0.000	0.01(94)	0.021(15)	0(0)	non tumor-specific	nAS	no
SIPA1L1_LS038	chr14:71671692|71672348:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000381232.7;ENST00000555818.5;ENST00000358550.6;ENST00000537413.5	15.043	13.668	19.902	0.961(9212)	0.984(691)	0.975(16954)	non tumor-specific	alt_3prime	yes
CEP85_LS002	chr1:26239838|26244166:+	CEP85	centrosomal protein 85	protein coding gene	no	ENST00000451429.7;ENST00000252992.8	10.008	3.479	4.734	0.859(8227)	0.869(610)	0.93(16157)	non tumor-specific	exon_skip	yes
FAHD2A_LS020	chr2:95412542|95413966:+	FAHD2A	fumarylacetoacetate hydrolase domain containing 2A	protein coding gene	no	.;.	3.552	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CANX_LS037	chr5:179726759|179728591:+	CANX	calnexin	protein coding gene	no	ENST00000504734.5;ENST00000247461.8;ENST00000452673.6;ENST00000514032.5	613.966	373.969	288.020	0.979(9383)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MATK_LS022	chr19:3785286|3786169:-	MATK	megakaryocyte-associated tyrosine kinase	protein coding gene	no	ENST00000310132.10;ENST00000585778.5	1.187	1.080	1.516	0.478(4581)	0.5(351)	0.502(8729)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NUMB_LS0018	chr14:73276944|73277093:+	NUMB	NUMB endocytic adaptor protein	protein coding gene	yes	.	2.490	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM157A_LS0109	chr3:198220175|198220418:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	3.406	0.091	0.000	0.011(106)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL4A1_LS043	chr13:110208890|110209392:-	COL4A1	collagen type IV alpha 1 chain	protein coding gene	no	ENST00000375820.9;ENST00000649738.1;ENST00000543140.6;ENST00000647797.1;ENST00000647632.1;ENST00000615732.2	127.797	67.674	36.039	0.95(9098)	0.983(690)	0.925(16080)	non tumor-specific	nAS	yes
UN_H19_LS0043	chr11:1995656|1995774:+	H19	H19 imprinted maternally expressed transcript	lncRNA gene	yes	.	149.949	0.163	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HLA-F_LS0017	chr6:29723927|29724247:+	HLA-F	major histocompatibility complex, class I, F	protein coding gene	no	.	12.159	2.200	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_KCTD15_LS0001	chr19:33796103|33796429:+	KCTD15	potassium channel tetramerization domain containing 15	protein coding gene	no	.	2.199	0.000	0.000	0.007(64)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC015849.3_LS001	chr17:35816941|35830031:-	AC015849.3	-	lncRNA gene	no	ENST00000603981.1	0.145	0.000	0.594	0(3)	0(0)	0.001(12)	non tumor-specific	nAS	yes
UN_ZNF701_LS0025	chr19:52582864|52583201:-	ZNF701	zinc finger protein 701	protein coding gene	no	.	2.406	0.383	0.000	0.037(351)	0.024(17)	0(0)	non tumor-specific	nAS	no
UN_MEN1_LS0033	chr11:64807216|64807552:-	MEN1	menin 1	protein coding gene	yes	.	5.388	3.002	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
SLC26A10_LS035	chr12:57625318|57625410:+	SLC26A10	solute carrier family 26 member 10	protein coding gene	no	ENST00000474359.6;ENST00000440686.5;ENST00000487816.5;ENST00000474791.5;ENST00000490243.5	1.668	1.281	18.651	0.502(4810)	0.383(269)	0.933(16219)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AC092954.1_UP_LS0003	chr3:168921954|168924650:+	AC092954.1	-	lncRNA gene	no	.	2.116	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
OAS3_LS002	chr12:112938707|112944476:+	OAS3	2'-5'-oligoadenylate synthetase 3	protein coding gene	no	ENST00000546638.1	0.474	0.329	0.682	0.276(2646)	0.165(116)	0.074(1290)	non tumor-specific	alt_3prime;exon_skip	yes
SIK3_LS027	chr11:116875451|116876253:-	SIK3	SIK family kinase 3	protein coding gene	no	ENST00000446921.6;ENST00000446921.6	0.894	1.272	4.719	0.828(7929)	0.943(662)	0.929(16152)	non tumor-specific	alt_3prime;exon_skip	yes
RUNX1_LS005	chr21:34799462|34859474:-	RUNX1	RUNX family transcription factor 1	protein coding gene	yes	ENST00000399240.5	4.576	1.738	3.114	0.913(8745)	0.882(619)	0.775(13466)	non tumor-specific	exon_skip	yes
UN_PHACTR4_LS0066	chr1:28466768|28471620:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	1.726	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DNAH14_LS0060	chr1:225252417|225259121:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	.	1.743	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PYGO2_LS0074	chr1:154959398|154959492:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	1.666	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
POLB_LS015	chr8:42357223|42357320:+	POLB	DNA polymerase beta	protein coding gene	no	ENST00000265421.8;ENST00000520008.5;ENST00000518925.5;ENST00000522610.5;ENST00000519771.5;ENST00000524208.5;ENST00000521290.5;ENST00000519524.1;ENST00000518579.5;ENST00000523465.1	23.374	12.133	23.954	0.996(9540)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ACTR5_LS009	chr20:38767596|38771559:+	ACTR5	actin related protein 5	protein coding gene	no	ENST00000243903.5	20.517	8.174	23.916	0.969(9282)	0.976(685)	0.979(17018)	non tumor-specific	nAS	yes
EPHX3_LS004	chr19:15231090|15231239:-	EPHX3	epoxide hydrolase 3	protein coding gene	no	ENST00000221730.7;ENST00000435261.5;ENST00000602233.5	12.203	6.373	1.666	0.525(5032)	0.608(427)	0.605(10509)	non tumor-specific	exon_skip;intron_retention	yes
DARS2_LS025	chr1:173853905|173856666:+	DARS2	aspartyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000361951.5;ENST00000648807.1;ENST00000649067.1;ENST00000647730.1;ENST00000649689.1;ENST00000648271.1;ENST00000647645.1	49.141	21.274	9.361	0.995(9531)	0.994(698)	0.975(16950)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ZSCAN30_LS0010	chr18:35254381|35263476:-	ZSCAN30	zinc finger and SCAN domain containing 30	protein coding gene	no	.	2.043	0.906	0.000	0.086(824)	0.137(96)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
USP47_LS007	chr11:11880380|11884467:+	USP47	ubiquitin specific peptidase 47	protein coding gene	no	ENST00000525257.1;ENST00000527733.5;ENST00000399455.2;ENST00000525367.1	15.927	14.507	18.464	0.946(9063)	0.989(694)	0.974(16938)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC062016.1_UP_LS0001	chr2:117053055|117054902:-	AC062016.1	-	pseudogene	no	.	2.621	0.280	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLEKHH3_LS010	chr17:42671130|42671351:-	PLEKHH3	pleckstrin homology, MyTH4 and FERM domain containing H3	protein coding gene	no	ENST00000591196.5;ENST00000591022.5;ENST00000456950.6;ENST00000591490.5;ENST00000293349.10	43.383	23.221	37.777	0.974(9332)	0.987(693)	0.965(16781)	non tumor-specific	alt_5prime	yes
MTRR_LS007	chr5:7869215|7870770:+	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein coding gene	no	ENST00000513439.5;ENST00000510279.5;ENST00000503550.5;ENST00000440940.6;ENST00000514369.5	0.781	1.226	6.096	0.92(8812)	0.964(677)	0.951(16525)	non tumor-specific	alt_5prime;exon_skip	yes
UN_POLD3_LS0028	chr11:74625573|74634583:+	POLD3	DNA polymerase delta 3, accessory subunit	protein coding gene	no	.	10.039	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC079587.1_UP_LS0032	chr2:10987082|10995523:-	AC079587.1	-	pseudogene	no	.	1.426	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
AEBP2_LS001	chr12:19404124|19462510:+	AEBP2	AE binding protein 2	protein coding gene	no	ENST00000541908.5	0.117	0.003	0.609	0.391(3748)	0.436(306)	0.004(74)	non tumor-specific	alt_5prime	yes
NTS_LS004	chr12:85878569|85882223:+	NTS	neurotensin	protein coding gene	no	ENST00000256010.6;ENST00000550879.1	5.461	2.537	1.845	0.522(5006)	0.842(591)	0.45(7821)	non tumor-specific	alt_3prime;exon_skip	yes
CC2D2B_LS019	chr10:95965998|95966190:+	CC2D2B	coiled-coil and C2 domain containing 2B	protein coding gene	no	ENST00000646931.1;ENST00000636965.1;ENST00000472454.6	3.083	0.278	1.162	0.014(137)	0.014(10)	0.488(8474)	non tumor-specific	nAS	yes
TRMT1_LS015	chr19:13110001|13110158:-	TRMT1	tRNA methyltransferase 1	protein coding gene	no	ENST00000437766.5;ENST00000357720.8;ENST00000593157.5;ENST00000592062.5;ENST00000588511.5;ENST00000587487.5	13.852	6.424	46.867	0.992(9502)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AK3_LS005	chr9:4719307|4722506:-	AK3	adenylate kinase 4	protein coding gene	no	ENST00000611749.4;ENST00000381809.7;ENST00000359883.6	91.479	112.177	74.709	0.989(9480)	0.997(700)	0.979(17009)	non tumor-specific	exon_skip	yes
UN_MUC1_LS0540	chr1:155191084|155191205:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	7.468	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SREBF2_LS017	chr22:41886308|41893117:+	SREBF2	sterol regulatory element binding transcription factor 2	protein coding gene	no	.;.	4.798	0.316	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
KYNU_LS010	chr2:142927741|142954022:+	KYNU	kynureninase	protein coding gene	no	ENST00000424385.5	0.261	0.000	0.692	0.025(237)	0.003(2)	0.05(874)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ADM2_LS0012	chr22:50484350|50485449:-	ADM2	adrenomedullin 2	protein coding gene	no	.	0.774	0.206	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPL30_LS0032	chr8:98042723|98044950:+	RPL30	ribosomal protein L30	protein coding gene	no	.	8.005	0.176	0.000	0.015(144)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC010890.1_LS001	chr2:133265102|133267273:+	AC010890.1	-	lncRNA gene	no	ENST00000454699.5	0.086	0.000	0.856	0.003(26)	0(0)	0.005(87)	non tumor-specific	nAS	yes
CDO1_LS006	chr5:115813258|115813898:-	CDO1	cysteine dioxygenase type 1	protein coding gene	yes	ENST00000504613.1	0.670	0.112	1.359	0.059(567)	0.175(123)	0.433(7530)	non tumor-specific	exon_skip	yes
GOLGA8K_LS017	chr15:32400461|32401356:-	GOLGA8K	golgin A8 family member K	protein coding gene	no	ENST00000512626.2	0.616	0.108	0.708	0.054(517)	0.08(56)	0.111(1931)	non tumor-specific	nAS	yes
UN_CAPNS1_LS0054	chr19:36149835|36149887:-	CAPNS1	calpain small subunit 1	protein coding gene	no	.	3.323	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_H2AFY_LS0001	chr5:135334161|135334937:+	H2AFY	macroH2A.1 histone	protein coding gene	no	.	1.853	0.377	0.000	0.007(71)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AL139412.1_LS004	chr1:156455721|156456353:-	AL139412.1	-	lncRNA gene	no	ENST00000441085.5;ENST00000452465.1	1.976	1.014	1.115	0.257(2460)	0.113(79)	0.324(5630)	non tumor-specific	nAS	yes
UN_CMAHP_UP_LS0003	chr6:25635015|25638294:-	CMAHP	cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene	pseudogene	no	.	2.814	1.614	0.000	0.003(30)	0.009(6)	0(0)	non tumor-specific	nAS	no
LINC01502_LS003	chr9:135577480|135581623:+	LINC01502	long intergenic non-protein coding RNA 1502	lncRNA gene	no	ENST00000445997.1	3.029	0.897	0.710	0.007(70)	0.003(2)	0.001(12)	non tumor-specific	nAS	yes
NDUFV1_LS036	chr11:67611569|67612052:+	NDUFV1	NADH:ubiquinone oxidoreductase core subunit V1	protein coding gene	no	.;.	15.513	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CNTN3_LS0012	chr3:74336658|74352196:-	CNTN3	contactin 3	protein coding gene	no	.	3.665	0.900	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
LINC00923_LS002	chr15:97576594|97652052:-	LINC00923	long intergenic non-protein coding RNA 923	lncRNA gene	no	ENST00000615399.1	2.918	0.011	0.921	0.008(77)	0.001(1)	0.194(3373)	non tumor-specific	nAS	yes
C4BPA_LS017	chr1:207134592|207141106:+	C4BPA	complement component 4 binding protein alpha	protein coding gene	no	ENST00000367070.7	69.187	190.696	1.727	0.326(3124)	0.466(327)	0.296(5151)	non tumor-specific	exon_skip	yes
UN_AC109439.2_UP_LS0029	chr5:136542531|136549122:+	AC109439.2	-	lncRNA gene	no	.	16.852	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
COL25A1_LS019	chr4:108845251|108846139:-	COL25A1	collagen type XXV alpha 1 chain	protein coding gene	no	ENST00000642955.1;ENST00000622134.4;ENST00000399132.5;ENST00000399127.5;ENST00000399126.1	3.969	0.869	1.547	0.079(761)	0.138(97)	0.531(9222)	non tumor-specific	alt_5prime	yes
UN_HNRNPA3P6_LS0034	chr3:75215282|75215310:+	HNRNPA3P6	heterogeneous nuclear ribonucleoprotein A3 pseudogene 6	pseudogene	no	.	17.434	1.600	0.000	0.018(170)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_FBXL5_LS0013	chr4:15626950|15627885:-	FBXL5	F-box and leucine rich repeat protein 5	protein coding gene	no	.	8.988	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_THADA_LS0019	chr2:43232882|43269481:-	THADA	THADA armadillo repeat containing	protein coding gene	no	.	1.464	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
USP15_LS003	chr12:62294306|62302790:+	USP15	ubiquitin specific peptidase 15	protein coding gene	no	ENST00000353364.7;ENST00000549523.5;ENST00000280377.9;ENST00000550632.5;ENST00000312635.10;ENST00000548524.5;ENST00000551206.5;ENST00000537297.2;ENST00000549237.5;ENST00000548836.1	24.957	17.290	25.463	0.965(9248)	0.989(694)	0.976(16973)	non tumor-specific	nAS	yes
AVIL_LS002	chr12:57799920|57801144:-	AVIL	advillin	protein coding gene	no	ENST00000549851.5;ENST00000551248.1;ENST00000257861.7	1.706	1.328	6.315	0.832(7976)	0.811(569)	0.956(16612)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UBA6_LS019	chr4:67644778|67645938:-	UBA6	ubiquitin like modifier activating enzyme 6	protein coding gene	no	ENST00000322244.9	15.463	8.198	11.314	0.892(8547)	0.947(665)	0.969(16839)	non tumor-specific	alt_3prime	yes
SEC16A_LS035	chr9:136459239|136459444:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000431893.3	45.010	29.196	34.553	0.984(9430)	0.993(697)	0.979(17013)	non tumor-specific	nAS	yes
CHUK_LS014	chr10:100204657|100205076:-	CHUK	component of inhibitor of nuclear factor kappa B kinase complex	protein coding gene	yes	ENST00000370397.7	22.955	18.386	13.013	0.911(8733)	0.974(684)	0.976(16962)	non tumor-specific	nAS	yes
GRM4_LS008	chr6:34040748|34056544:-	GRM4	glutamate metabotropic receptor 4	protein coding gene	no	ENST00000535756.5;ENST00000538487.6;ENST00000545715.5;ENST00000609222.5;ENST00000609860.5;ENST00000544773.6;ENST00000455714.6;ENST00000609278.1;ENST00000609443.1	4.437	0.388	2.030	0.168(1609)	0.011(8)	0.245(4267)	non tumor-specific	exon_skip	yes
UN_ULK4_LS0048	chr3:41717861|41747816:-	ULK4	unc-51 like kinase 4	protein coding gene	no	.	3.235	0.052	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SHOX_UP_LS0003	chrX:387290|421672:+	SHOX	short stature homeobox	protein coding gene	no	.	2.420	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GTPBP3_LS029	chr19:17339599|17341107:+	GTPBP3	GTP binding protein 3, mitochondrial	protein coding gene	no	ENST00000598038.5;ENST00000600625.5	0.748	0.507	5.259	0.824(7892)	0.754(529)	0.952(16553)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_GLYATL2_LS0029	chr11:58895626|58904156:-	GLYATL2	glycine-N-acyltransferase like 2	protein coding gene	no	.	2.805	0.039	0.000	0.006(60)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MYH2_LS018	chr17:10529740|10529832:-	MYH2	myosin heavy chain 2	protein coding gene	no	ENST00000245503.9;ENST00000397183.6	16.328	16.610	1.117	0.031(293)	0.101(71)	0.381(6627)	non tumor-specific	nAS	yes
NBEAL1_LS061	chr2:203217350|203226123:+	NBEAL1	neurobeachin like 1	protein coding gene	no	ENST00000434469.1	0.240	0.079	0.672	0.01(100)	0.016(11)	0.015(258)	non tumor-specific	exon_skip	yes
APC_LS021	chr5:112821991|112834951:+	APC	APC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000502371.2	0.120	0.063	0.693	0.206(1976)	0.323(227)	0.028(488)	non tumor-specific	nAS	yes
AL807740.1_LS002	chrX:20474231|20492269:+	AL807740.1	-	lncRNA gene	no	ENST00000636971.1	5.968	0.000	0.843	0.003(25)	0(0)	0.013(226)	non tumor-specific	nAS	yes
MIR7-3HG_LS005	chr19:4769351|4769648:+	MIR7-3HG	MIR7-3 host gene	lncRNA gene	no	ENST00000588758.5	2.483	0.360	1.868	0.006(57)	0.003(2)	0.125(2175)	non tumor-specific	nAS	yes
AC118758.3_LS005	chr7:56833138|56835196:-	AC118758.3	-	lncRNA gene	no	ENST00000624628.1	0.307	0.000	0.510	0(4)	0(0)	0(1)	non tumor-specific	nAS	yes
CLTCL1_LS007	chr22:19183611|19187558:-	CLTCL1	clathrin heavy chain like 1	protein coding gene	no	ENST00000427926.5;ENST00000617926.4;ENST00000615606.4;ENST00000617103.4;ENST00000427926.5;ENST00000617926.4;ENST00000615606.4;ENST00000617103.4	5.873	2.944	4.928	0.667(6388)	0.648(455)	0.944(16415)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CIAO3_LS002	chr16:731000|731565:-	CIAO3	cytosolic iron-sulfur assembly component 3	protein coding gene	no	ENST00000251588.6;ENST00000568545.5;ENST00000566650.5;ENST00000540986.5;ENST00000565425.5;ENST00000562862.5;ENST00000564285.1	55.961	28.683	37.357	0.995(9530)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IGLV9-49_LS0003	chr22:22343275|22343407:+	IGLV9-49	immunoglobulin lambda variable 9-49	no	no	.	24.006	0.449	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00635_LS014	chr3:107855229|107857080:-	LINC00635	long intergenic non-protein coding RNA 635	lncRNA gene	no	ENST00000464359.6;ENST00000609366.5;ENST00000464823.5;ENST00000466155.5;ENST00000612802.4;ENST00000601930.5;ENST00000596110.5;ENST00000608306.5;ENST00000601385.5;ENST00000600749.5;ENST00000611829.4;ENST00000608137.5	0.744	0.068	0.704	0.019(179)	0.033(23)	0.008(145)	non tumor-specific	nAS	yes
BSCL2_LS004	chr11:62690731|62690817:-	BSCL2	BSCL2 lipid droplet biogenesis associated, seipin	protein coding gene	no	ENST00000449636.5	0.124	0.209	1.103	0.546(5235)	0.548(385)	0.508(8824)	non tumor-specific	nAS	yes
CDCA8_LS005	chr1:37698977|37700436:+	CDCA8	cell division cycle associated 8	protein coding gene	no	ENST00000373055.5;ENST00000327331.2	34.259	5.310	2.066	0.918(8798)	0.711(499)	0.767(13329)	non tumor-specific	nAS	yes
KNDC1_LS016	chr10:133197768|133198337:+	KNDC1	kinase non-catalytic C-lobe domain containing 1	protein coding gene	no	ENST00000304613.7;ENST00000368571.2	7.088	5.796	3.628	0.31(2967)	0.423(297)	0.518(9003)	non tumor-specific	nAS	yes
SH3RF2_LS012	chr5:146056213|146059866:+	SH3RF2	SH3 domain containing ring finger 2	protein coding gene	no	ENST00000359120.8;ENST00000511217.1;ENST00000504522.1	13.805	11.732	5.758	0.809(7754)	0.947(665)	0.797(13857)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_TPTE2P1_LS0026	chr13:24937770|24940477:-	TPTE2P1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudogene	no	.	3.314	0.745	0.000	0.008(76)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SMG1P3_LS0024	chr16:21501377|21501777:-	SMG1P3	SMG1 pseudogene 3	pseudogene	no	.	2.125	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
GOLGA8M_LS015	chr15:28708413|28709267:-	GOLGA8M	golgin A8 family member M	lncRNA gene	no	ENST00000563027.1	1.600	0.529	1.815	0.046(439)	0.087(61)	0.643(11185)	non tumor-specific	nAS	yes
INTS6_LS003	chr13:51367898|51368939:-	INTS6	integrator complex subunit 6	protein coding gene	yes	ENST00000476666.5;ENST00000398119.6;ENST00000469430.5;ENST00000311234.8;ENST00000497989.5;ENST00000483441.5;ENST00000490542.5	41.828	24.404	32.286	0.989(9476)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime	yes
CYFIP2_LS044	chr5:157339256|157341070:+	CYFIP2	cytoplasmic FMR1 interacting protein 2	protein coding gene	no	ENST00000616178.4;ENST00000620254.4;ENST00000522463.5;ENST00000435847.6;ENST00000521420.5;ENST00000618329.4;ENST00000520424.1	48.113	78.539	18.152	0.97(9296)	0.994(698)	0.975(16945)	non tumor-specific	nAS	yes
UN_AC006453.4_UP_LS0223	chr2:89027337|89142741:+	AC006453.4	-	pseudogene	no	.	148.913	22.947	0.000	0.033(318)	0.026(18)	0(0)	non tumor-specific	nAS	no
TCF12_LS006	chr15:56921098|57063750:+	TCF12	transcription factor 12	protein coding gene	no	ENST00000438423.6;ENST00000267811.9;ENST00000333725.9;ENST00000557843.5;ENST00000557947.5	22.689	15.412	18.812	0.933(8941)	0.977(686)	0.974(16928)	non tumor-specific	exon_skip	yes
UN_TM9SF4_LS0007	chr20:32121893|32122317:-	TM9SF4	transmembrane 9 superfamily member 4	protein coding gene	no	.	4.071	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PLEKHA5_LS0040	chr12:19283745|19320562:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	.	3.783	0.086	0.000	0.007(66)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
VWA7_LS019	chr6:31773437|31774516:-	VWA7	von Willebrand factor A domain containing 7	protein coding gene	no	ENST00000375688.4	7.019	7.844	2.334	0.518(4965)	0.761(534)	0.69(11999)	non tumor-specific	alt_3prime	yes
UN_CDCA7L_LS0003	chr7:21901255|21918536:+	CDCA7L	cell division cycle associated 7 like	protein coding gene	no	.	4.814	1.119	0.000	0.032(311)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_JUN_LS0101	chr1:58782836|58782954:+	JUN	Jun proto-oncogene, AP-1 transcription factor subunit	protein coding gene	yes	.	3.902	5.916	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
C1QC_LS008	chr1:22643737|22647227:+	C1QC	complement C1q C chain	protein coding gene	no	.;.	2.644	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC01389_UP_LS0008	chr1:47410600|47417231:-	LINC01389	long intergenic non-protein coding RNA 1389	lncRNA gene	no	.	0.873	0.145	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IFT122_LS0037	chr3:129506836|129507668:+	IFT122	intraflagellar transport 122	protein coding gene	no	.	1.961	0.049	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MTRF1L_LS013	chr6:152998629|153002427:-	MTRF1L	mitochondrial translational release factor 1 like	protein coding gene	no	ENST00000367233.9;ENST00000464135.5;ENST00000367231.9;ENST00000367230.5;ENST00000485512.5;ENST00000463251.1;ENST00000482526.1	5.856	4.990	22.540	0.936(8965)	0.96(674)	0.977(16990)	non tumor-specific	nAS	yes
UN_PSMA7_LS0001	chr20:62136962|62137364:-	PSMA7	proteasome 20S subunit alpha 7	protein coding gene	no	.	161.340	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
FDPS_LS039	chr1:155318332|155318856:+	FDPS	farnesyl diphosphate synthase	protein coding gene	yes	.;.	16.108	1.014	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
DOLPP1_LS007	chr9:129085616|129086139:+	DOLPP1	dolichyldiphosphatase 1	protein coding gene	no	ENST00000372546.8	27.017	16.674	8.079	0.983(9422)	0.996(699)	0.967(16807)	non tumor-specific	exon_skip	yes
GOLGA8UP_LS007	chr15:30797822|30798204:+	GOLGA8UP	golgin A8 family member U, pseudogene	pseudogene	no	ENST00000527159.2	2.137	0.000	0.636	0.001(10)	0(0)	0.045(790)	non tumor-specific	nAS	yes
ZNF276_LS019	chr16:89734038|89737806:+	ZNF276	zinc finger protein 276	protein coding gene	no	ENST00000562530.5;ENST00000289816.9;ENST00000568064.5;ENST00000563983.5;ENST00000443381.6;ENST00000568295.5;ENST00000561536.5;ENST00000564004.5;ENST00000569582.1;ENST00000562530.5;ENST00000289816.9;ENST00000568064.5;ENST00000563983.5;ENST00000443381.6;ENST00000568295.5;ENST00000561536.5;ENST00000564004.5;ENST00000569582.1	17.131	7.385	58.838	0.996(9538)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
MYO1H_LS023	chr12:109436556|109438536:+	MYO1H	myosin IH	protein coding gene	no	ENST00000310903.9;ENST00000431443.6	4.469	0.126	0.747	0.01(97)	0.003(2)	0.056(972)	non tumor-specific	exon_skip	yes
STIL_LS010	chr1:47269866|47272076:-	STIL	STIL centriolar assembly protein	protein coding gene	yes	ENST00000360380.7;ENST00000337817.9;ENST00000371877.7;ENST00000396221.6;ENST00000447475.6;ENST00000418131.1;ENST00000436811.1	8.969	1.432	1.559	0.803(7689)	0.511(359)	0.675(11735)	non tumor-specific	nAS	yes
GCNA_LS009	chrX:71605729|71608973:+	GCNA	germ cell nuclear acidic peptidase	protein coding gene	no	ENST00000373696.7;ENST00000373695.1	3.161	1.960	3.949	0.194(1856)	0.158(111)	0.945(16423)	non tumor-specific	nAS	yes
UN_SORCS2_LS0002	chr4:7193126|7266580:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	.	2.859	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SORBS2_LS040	chr4:185677638|185678423:-	SORBS2	sorbin and SH3 domain containing 2	protein coding gene	no	ENST00000437304.6;ENST00000421420.5;ENST00000464975.5;ENST00000464819.5;ENST00000478249.5	0.086	0.096	1.382	0.145(1394)	0.399(280)	0.426(7409)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
PLAA_LS013	chr9:26926560|26928100:-	PLAA	phospholipase A2 activating protein	protein coding gene	no	ENST00000397292.7;ENST00000520884.5;ENST00000523212.1	38.172	25.612	20.556	0.968(9274)	0.99(695)	0.977(16990)	non tumor-specific	nAS	yes
TPRXL_LS008	chr3:14002609|14063379:+	TPRXL	tetrapeptide repeat homeobox like (pseudogene)	pseudogene	no	ENST00000528312.5	0.003	0.000	0.683	0.085(814)	0.05(35)	0.002(28)	non tumor-specific	nAS	yes
AL513164.1_LS001	chr6:148237615|148239987:-	AL513164.1	-	lncRNA gene	no	ENST00000423268.1	0.624	0.000	0.605	0.013(122)	0(0)	0.018(308)	non tumor-specific	nAS	yes
UN_AC109495.1_UP_LS0011	chr16:17859028|17861090:-	AC109495.1	-	lncRNA gene	no	.	4.449	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POTEM_UP_LS0005	chr14:18954858|18957275:+	POTEM	POTE ankyrin domain family member M	protein coding gene	no	.	3.675	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EGFR_LS014	chr7:55156659|55156759:+	EGFR	epidermal growth factor receptor	protein coding gene	yes	ENST00000455089.5;ENST00000342916.7;ENST00000454757.6;ENST00000344576.6;ENST00000420316.6;ENST00000275493.6;ENST00000638463.1	22.494	18.305	12.969	0.819(7848)	0.98(688)	0.914(15879)	non tumor-specific	nAS	yes
AL138799.2_LS001	chr1:81505134|81505990:+	AL138799.2	-	lncRNA gene	no	ENST00000439024.1	0.002	0.128	0.636	0.233(2232)	0.198(139)	0.002(32)	non tumor-specific	nAS	yes
AC007681.1_LS001	chr2:75154571|75156204:+	AC007681.1	-	lncRNA gene	no	ENST00000604271.2	1.049	0.642	1.112	0.144(1379)	0.338(237)	0.342(5942)	non tumor-specific	nAS	yes
UN_CNN2P9_UP_LS0001	chr6:110814815|110858029:+	CNN2P9	calponin 2 pseudogene 9	pseudogene	no	.	1.410	0.062	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
UBR5_LS029	chr8:102277192|102278826:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	ENST00000520539.5;ENST00000220959.8;ENST00000521922.5	51.021	29.309	37.933	0.974(9333)	0.989(694)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_AL162595.1_LS0003	chr1:229259120|229265595:-	AL162595.1	-	no	no	.	3.017	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SORCS2_LS0072	chr4:7667213|7669685:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	.	3.055	0.018	0.000	0.043(415)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC02315_UP_LS0029	chr14:40865236|40885664:+	LINC02315	long intergenic non-protein coding RNA 2315	lncRNA gene	no	.	2.902	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	nAS	no
RNF2_LS002	chr1:185046295|185087552:+	RNF2	ring finger protein 2	protein coding gene	no	ENST00000453650.2	0.245	0.104	0.698	0.106(1013)	0.056(39)	0.056(967)	non tumor-specific	nAS	yes
LMNA_LS012	chr1:156114911|156114964:+	LMNA	lamin A/C	protein coding gene	no	ENST00000478063.2	2.535	6.112	7.648	0.907(8690)	0.919(645)	0.915(15905)	non tumor-specific	intron_retention	yes
FGFR3_LS015	chr4:1802025|1804330:+	FGFR3	fibroblast growth factor receptor 3	protein coding gene	yes	.;.;.	2.640	5.676	0.000	0.012(112)	0.016(11)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CHD1L_LS0048	chr1:147295487|147295523:-	CHD1L	chromodomain helicase DNA binding protein 1 like	protein coding gene	yes	.	3.121	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC02580_UP_LS0001	chr2:43128863|43132370:-	LINC02580	long intergenic non-protein coding RNA 2580	lncRNA gene	no	.	0.867	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GPR137B_LS013	chr1:236205250|236221791:+	GPR137B	G protein-coupled receptor 137B	protein coding gene	no	ENST00000477559.2	0.434	0.159	0.754	0.226(2163)	0.198(139)	0.15(2613)	non tumor-specific	exon_skip	yes
UN_POLR1E_LS0001	chr9:37486076|37486703:+	POLR1E	RNA polymerase I subunit E	protein coding gene	no	.	0.502	0.017	0.000	0.01(92)	0.014(10)	0(0)	non tumor-specific	alt_5prime	no
UN_CHD9_LS0073	chr16:53157541|53208265:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	3.171	0.170	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
GTF2IP7_LS001	chr7:76092166|76093297:-	GTF2IP7	general transcription factor IIi pseudogene 7	pseudogene	no	ENST00000434037.1	2.411	0.484	1.417	0.156(1493)	0.239(168)	0.412(7162)	non tumor-specific	nAS	yes
KXD1_LS003	chr19:18557914|18559173:+	KXD1	KxDL motif containing 1	protein coding gene	no	ENST00000600796.1	0.011	0.132	0.675	0.06(578)	0.04(28)	0.09(1564)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_GNG12_LS0049	chr1:67830298|67833344:-	GNG12	G protein subunit gamma 12	protein coding gene	no	.	4.084	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
ASPSCR1_LS044	chr17:82017088|82017309:+	ASPSCR1	ASPSCR1 tether for SLC2A4, UBX domain containing	protein coding gene	yes	ENST00000581608.5;ENST00000583744.1;ENST00000583142.5;ENST00000585140.1	0.453	0.304	3.016	0.852(8165)	0.84(590)	0.929(16148)	non tumor-specific	alt_3prime;alt_5prime	yes
ZNF142_LS001	chr2:218638808|218640664:-	ZNF142	zinc finger protein 142	protein coding gene	no	ENST00000449707.5;ENST00000411696.6;ENST00000433921.5;ENST00000450765.5	23.582	9.975	23.821	0.977(9356)	0.97(681)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime	yes
NLRC3_LS027	chr16:3565380|3567243:-	NLRC3	NLR family CARD domain containing 3	protein coding gene	no	ENST00000359128.9;ENST00000615877.4;ENST00000603055.1	2.527	1.561	1.105	0.219(2102)	0.219(154)	0.386(6707)	non tumor-specific	nAS	yes
FCHSD2_LS006	chr11:72841583|72843151:-	FCHSD2	FCH and double SH3 domains 2	protein coding gene	no	ENST00000409263.5;ENST00000409263.5	0.774	0.421	0.886	0.557(5340)	0.611(429)	0.404(7027)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FIG4_LS0007	chr6:109715176|109727109:+	FIG4	FIG4 phosphoinositide 5-phosphatase	protein coding gene	no	.	0.972	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
SGK2_LS017	chr20:43575004|43576224:+	SGK2	serum/glucocorticoid regulated kinase family member 3	protein coding gene	no	ENST00000373077.5;ENST00000373092.8;ENST00000648530.1;ENST00000496343.6;ENST00000373100.6;ENST00000423407.7;ENST00000341458.9;ENST00000426287.2;ENST00000647716.1	20.585	35.843	3.971	0.528(5058)	0.621(436)	0.84(14596)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COL9A2_LS0033	chr1:40311286|40311488:-	COL9A2	collagen type IX alpha 2 chain	protein coding gene	no	.	11.362	2.667	0.000	0.038(365)	0.058(41)	0(0)	non tumor-specific	alt_5prime	no
UN_MYH15_LS0023	chr3:108486526|108486939:-	MYH15	myosin heavy chain 15	protein coding gene	no	.	1.424	0.566	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AQP12A_LS0006	chr2:240694549|240697182:+	AQP12A	aquaporin 12A	protein coding gene	no	.	9.175	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_HPS3_LS0016	chr3:149155215|149157354:+	HPS3	HPS3 biogenesis of lysosomal organelles complex 2 subunit 1	protein coding gene	no	.	2.774	0.569	0.000	0.028(269)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PPP6R3_LS008	chr11:68505271|68515028:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000528635.5	0.057	0.007	0.640	0.254(2437)	0.38(267)	0.107(1864)	non tumor-specific	alt_5prime;exon_skip	yes
LRRC71_LS022	chr1:156932545|156932853:+	LRRC71	leucine rich repeat containing 71	protein coding gene	no	ENST00000337428.7;ENST00000472465.1	0.465	0.671	1.165	0.257(2463)	0.283(199)	0.441(7664)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LPXN_LS006	chr11:58551232|58553855:-	LPXN	leupaxin	protein coding gene	no	ENST00000530561.5	0.044	0.144	0.684	0.024(233)	0.038(27)	0.038(668)	non tumor-specific	exon_skip	yes
TBP_LS013	chr6:170567505|170569612:+	TBP	TATA-box binding protein	protein coding gene	no	ENST00000636632.1	3.033	0.585	2.483	0.026(253)	0.021(15)	0.841(14611)	non tumor-specific	exon_skip	yes
CLN6_LS018	chr15:68218650|68256690:-	CLN6	CLN6 transmembrane ER protein	protein coding gene	no	ENST00000538696.5	0.791	0.425	0.763	0.262(2511)	0.303(213)	0.187(3242)	non tumor-specific	alt_5prime	yes
ARNT2_LS013	chr15:80513976|80514320:+	ARNT2	aryl hydrocarbon receptor nuclear translocator 2	protein coding gene	no	ENST00000303329.8;ENST00000622346.4;ENST00000533983.5;ENST00000527771.5;ENST00000525103.1	11.309	16.113	3.961	0.633(6063)	0.803(564)	0.813(14125)	non tumor-specific	nAS	yes
CIT_LS021	chr12:119713294|119713468:-	CIT	citron rho-interacting serine/threonine kinase	protein coding gene	no	ENST00000392521.6;ENST00000261833.11;ENST00000545913.5;ENST00000392520.2;ENST00000537607.5;ENST00000543239.1;ENST00000536008.1	4.526	5.318	3.792	0.92(8812)	0.89(625)	0.818(14225)	non tumor-specific	exon_skip	yes
TIAM2_LS050	chr6:155254573|155256460:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000528391.6	0.883	0.140	0.729	0.013(121)	0.004(3)	0.014(251)	non tumor-specific	alt_3prime;intron_retention	yes
UN_HEATR4_LS0024	chr14:73500681|73504953:+	HEATR4	HEAT repeat containing 4	protein coding gene	no	.	1.762	0.722	0.000	0.123(1176)	0.083(58)	0(0)	non tumor-specific	nAS	no
B4GALT6_LS015	chr18:31666372|31684312:-	B4GALT6	beta-1,4-galactosyltransferase 6	protein coding gene	no	ENST00000306851.9;ENST00000383131.3;ENST00000306851.9;ENST00000383131.3	3.733	2.560	2.012	0.557(5336)	0.712(500)	0.731(12710)	non tumor-specific	alt_5prime;exon_skip	yes
KIAA1755_LS006	chr20:38217005|38217253:-	KIAA1755	KIAA1755	protein coding gene	no	ENST00000460881.5	0.029	0.068	1.389	0.191(1832)	0.201(141)	0.481(8354)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
NINL_LS016	chr20:25480267|25481968:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5	10.120	8.127	6.946	0.82(7856)	0.89(625)	0.919(15970)	non tumor-specific	nAS	yes
UN_UBC_LS0137	chr12:124912134|124912364:+	UBC	ubiquitin C	protein coding gene	no	.	87.928	10.433	0.000	0.012(115)	0.007(5)	0(0)	non tumor-specific	nAS	no
RAP1B_LS051	chr12:68650468|68651995:+	RAP1B	RAP1B, member of RAS oncogene family	protein coding gene	no	ENST00000250559.13;ENST00000393436.9;ENST00000425247.6;ENST00000541167.5;ENST00000538283.5;ENST00000341355.9;ENST00000537460.5;ENST00000545270.5;ENST00000538980.5;ENST00000542018.5;ENST00000534899.5;ENST00000453560.6;ENST00000540781.5;ENST00000542145.5;ENST00000485252.6;ENST00000538877.5;ENST00000543697.5;ENST00000545720.6;ENST00000541216.1;ENST00000544639.1	96.362	67.406	116.555	0.993(9510)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PIK3C2B_LS0016	chr1:204433425|204434439:-	PIK3C2B	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein coding gene	no	.	1.897	0.243	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ZAP70_LS0005	chr2:97714668|97724016:+	ZAP70	zeta chain of T cell receptor associated protein kinase 70	protein coding gene	no	.	1.556	0.171	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KIAA1109_LS040	chr4:122246810|122247158:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000446180.5;ENST00000470182.1	2.702	2.798	6.413	0.77(7374)	0.917(644)	0.925(16078)	non tumor-specific	nAS	yes
UN_AC012470.1_LS0008	chr10:116275522|116276265:+	AC012470.1	-	no	no	.	2.142	0.386	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UBA6_LS006	chr4:67625187|67626360:-	UBA6	ubiquitin like modifier activating enzyme 6	protein coding gene	no	ENST00000322244.9	22.834	10.838	17.624	0.95(9105)	0.979(687)	0.976(16961)	non tumor-specific	alt_3prime;exon_skip	yes
GALNT14_LS034	chr2:31125253|31126689:-	GALNT14	polypeptide N-acetylgalactosaminyltransferase 14	protein coding gene	no	ENST00000498206.5	0.041	0.001	0.690	0.018(173)	0.031(22)	0.012(208)	non tumor-specific	nAS	yes
ZRANB1_LS002	chr10:124966781|124971965:+	ZRANB1	zinc finger RANBP2-type containing 1	protein coding gene	no	ENST00000359653.4	34.539	32.415	45.483	0.981(9401)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CAP1_LS019	chr1:40040965|40059334:+	CAP1	cyclase associated actin cytoskeleton regulatory protein 1	protein coding gene	no	ENST00000446031.1;ENST00000446031.1	0.027	0.114	0.588	0.726(6960)	0.829(582)	0.007(123)	non tumor-specific	alt_5prime;exon_skip	yes
DENND4B_LS038	chr1:153942113|153942556:-	DENND4B	DENN domain containing 4B	protein coding gene	no	ENST00000472932.2;ENST00000472932.2;ENST00000472932.2	0.062	0.024	1.222	0.525(5027)	0.577(405)	0.654(11367)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SHLD1_LS0020	chr20:5773043|5817485:+	SHLD1	shieldin complex subunit 1	protein coding gene	no	.	3.694	1.542	0.000	0.111(1065)	0.152(107)	0(0)	non tumor-specific	exon_skip	no
HSD3B2_LS001	chr1:119415090|119415331:+	HSD3B2	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein coding gene	no	ENST00000543831.5;ENST00000433745.5	0.208	0.060	3.220	0.019(183)	0.048(34)	0.031(537)	non tumor-specific	alt_5prime	yes
UN_MUC6_LS0128	chr11:1017572|1017681:+	MUC6	mucin 6, oligomeric mucus/gel-forming	protein coding gene	no	.	42.525	3.041	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ACAP3_LS0021	chr1:1295554|1295782:-	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein coding gene	no	.	2.776	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
TRPV6_LS002	chr7:142872478|142873448:-	TRPV6	transient receptor potential cation channel subfamily V member 6	protein coding gene	no	ENST00000359396.7;ENST00000485138.5;ENST00000615386.4;ENST00000638686.1	11.368	14.683	3.474	0.342(3278)	0.648(455)	0.485(8436)	non tumor-specific	intron_retention	yes
DIABLO_LS014	chr12:122216869|122224645:-	DIABLO	diablo IAP-binding mitochondrial protein	protein coding gene	yes	ENST00000541273.6;ENST00000541273.6	0.068	0.109	0.763	0.84(8049)	0.812(570)	0.342(5936)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_CIITA_LS0076	chr16:10929360|10929472:-	CIITA	class II major histocompatibility complex transactivator	protein coding gene	no	.	3.351	0.000	0.000	0.006(57)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
HLA-V_LS002	chr6:29791774|29792225:+	HLA-V	major histocompatibility complex, class I, V (pseudogene)	pseudogene	no	ENST00000446817.1	0.267	0.179	0.857	0.152(1458)	0.181(127)	0.125(2167)	non tumor-specific	nAS	yes
WFDC3_LS002	chr20:45758431|45774400:-	WFDC3	WAP four-disulfide core domain 3	protein coding gene	no	ENST00000481847.5	0.547	0.063	0.775	0.016(154)	0.001(1)	0.148(2565)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FGFR2_LS0006	chr10:121480009|121480102:+	FGFR2	fibroblast growth factor receptor 2	protein coding gene	yes	.	17.579	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PLEKHH1_LS036	chr14:67583883|67583995:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5;ENST00000561370.5;ENST00000558366.5;ENST00000559981.1	10.371	12.398	7.933	0.845(8092)	0.823(578)	0.873(15171)	non tumor-specific	alt_5prime;exon_skip	yes
NBPF20_LS020	chr1:145316258|145316978:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6;ENST00000622803.4	0.172	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_PGAM1P2_UP_LS0001	chr9:35945394|35971671:-	PGAM1P2	phosphoglycerate mutase 1 pseudogene 2	pseudogene	no	.	0.415	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FRG1EP_LS003	chr20:29488213|29490007:-	FRG1EP	FSHD region gene 1 family member E, pseudogene	pseudogene	no	ENST00000634469.1	4.791	0.691	1.051	0.081(773)	0.041(29)	0.339(5887)	non tumor-specific	nAS	yes
MAVS_LS003	chr20:3854741|3861332:+	MAVS	mitochondrial antiviral signaling protein	protein coding gene	no	ENST00000416600.6	0.265	0.270	1.064	0.754(7226)	0.793(557)	0.574(9982)	non tumor-specific	exon_skip	yes
UN_AL929601.2_UP_LS0009	chr14:18942441|18944166:+	AL929601.2	-	lncRNA gene	no	.	5.987	1.198	0.000	0.007(71)	0.023(16)	0(0)	non tumor-specific	nAS	no
ZNF236_LS035	chr18:76960855|76968215:+	ZNF236	zinc finger protein 236	protein coding gene	no	ENST00000320610.13;ENST00000543926.6;ENST00000253159.12	8.070	4.736	8.531	0.87(8340)	0.889(624)	0.964(16755)	non tumor-specific	nAS	yes
UN_GRIA1_LS0014	chr5:153770415|153802356:+	GRIA1	glutamate ionotropic receptor AMPA type subunit 1	protein coding gene	no	.	3.910	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UACA_LS003	chr15:70664814|70666724:-	UACA	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein coding gene	no	ENST00000322954.10;ENST00000379983.6;ENST00000560441.5;ENST00000539319.5	50.943	40.671	73.250	0.983(9417)	0.993(697)	0.969(16837)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CARM1P1_LS0007	chr9:2948282|2992440:-	CARM1P1	coactivator associated arginine methyltransferase 1 pseudogene 1	pseudogene	no	.	4.249	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SMIM10L2B-AS1_UP_LS0065	chrX:135033205|135034669:+	SMIM10L2B-AS1	SMIM10L2B antisense RNA 1	lncRNA gene	no	.	2.420	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PPP2R2B_LS024	chr5:146878195|146878701:-	PPP2R2B	symbol withdrawn, see [HGNC:9305](/data/gene-symbol-report/#!/hgnc_id/HGNC:9305)	protein coding gene	no	ENST00000530902.5;ENST00000532154.5	0.399	0.292	1.664	0.352(3377)	0.507(356)	0.431(7491)	non tumor-specific	alt_5prime	yes
UN_PRELP_UP_LS0006	chr1:203313702|203313801:+	PRELP	proline and arginine rich end leucine rich repeat protein	protein coding gene	no	.	1.883	0.422	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TNFAIP2_UP_LS0014	chr14:103119120|103120017:+	TNFAIP2	TNF alpha induced protein 2	protein coding gene	no	.	3.137	0.086	0.000	0.019(186)	0.001(1)	0(0)	non tumor-specific	nAS	no
TEX41_LS014	chr2:144768280|144889947:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000414256.5	0.171	0.000	0.553	0.002(18)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_AC107021.1_UP_LS0003	chr3:146017115|146026952:+	AC107021.1	-	lncRNA gene	no	.	4.255	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
TANK_LS054	chr2:161224746|161230971:+	TANK	TRAF family member associated NFKB activator	protein coding gene	yes	ENST00000259075.6;ENST00000392749.6;ENST00000429217.5;ENST00000405852.5;ENST00000468831.5;ENST00000437623.1	56.036	41.234	43.791	0.991(9495)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
EMBP1_LS007	chr1:121564913|121565764:+	EMBP1	embigin pseudogene 1	pseudogene	no	ENST00000622787.4;ENST00000648011.1;ENST00000458200.2	7.604	3.054	0.840	0.451(4317)	0.425(298)	0.248(4309)	non tumor-specific	nAS	yes
CLCN1_LS028	chr7:143350476|143350568:+	CLCN1	chloride voltage-gated channel 1	protein coding gene	no	ENST00000343257.6	4.689	1.747	1.119	0.128(1225)	0.178(125)	0.379(6588)	non tumor-specific	exon_skip	yes
UN_LPIN3_LS0041	chr20:41358915|41359509:+	LPIN3	lipin 3	protein coding gene	no	.	3.429	0.293	0.000	0.012(118)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_CHD4_LS0041	chr12:6578523|6581344:-	CHD4	chromodomain helicase DNA binding protein 4	protein coding gene	no	.	13.509	0.261	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADGRF5_LS007	chr6:46863096|46863202:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	ENST00000498632.1	0.012	0.031	0.696	0.437(4186)	0.681(478)	0.013(230)	non tumor-specific	nAS	yes
UN_HES4_LS0013	chr1:999432|999533:-	HES4	hes family bHLH transcription factor 4	protein coding gene	no	.	3.610	2.050	0.000	0.067(642)	0.047(33)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_COL3A1_LS0186	chr2:189004135|189004267:+	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	.	354.333	1.407	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RABGAP1_LS0007	chr9:122957209|122957977:+	RABGAP1	RAB GTPase activating protein 1	protein coding gene	no	.	1.788	0.170	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	nAS	no
SERPINF2_LS023	chr17:1752663|1754122:+	SERPINF2	serpin family F member 2	protein coding gene	no	.;.	14.374	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DTWD2_LS0040	chr5:118973599|118974172:-	DTWD2	DTW domain containing 2	protein coding gene	no	.	2.900	1.007	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC25A15P1_LS001	chrY:26586766|26587398:-	SLC25A15P1	solute carrier family 25 member 15 pseudogene 1	pseudogene	no	ENST00000456738.1	0.363	0.014	0.649	0.004(42)	0.01(7)	0.001(12)	non tumor-specific	nAS	yes
ANGPTL4_LS006	chr19:8364639|8365954:+	ANGPTL4	angiopoietin like 4	protein coding gene	yes	ENST00000301455.6;ENST00000595079.5;ENST00000598255.5;ENST00000594348.1;ENST00000393962.6;ENST00000593998.5;ENST00000594875.1	12.082	8.148	30.527	0.928(8893)	0.983(690)	0.951(16532)	non tumor-specific	nAS	yes
SLC12A9_LS011	chr7:100852835|100859885:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	.;.	2.245	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
GALNS_LS024	chr16:88842829|88843030:-	GALNS	galactosamine (N-acetyl)-6-sulfatase	protein coding gene	no	ENST00000568613.5;ENST00000565364.1	0.095	0.368	1.683	0.207(1984)	0.325(228)	0.666(11579)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_PSORS1C1_LS0022	chr6:31127548|31129557:-	PSORS1C1	psoriasis susceptibility 1 candidate 1	protein coding gene	no	.	3.203	0.203	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
DHX9_LS014	chr1:182858240|182858551:+	DHX9	DExH-box helicase 9	protein coding gene	no	ENST00000367549.3	109.126	65.035	42.036	0.966(9253)	0.987(693)	0.979(17015)	non tumor-specific	nAS	yes
UN_CSDE1_LS0062	chr1:114741673|114745157:-	CSDE1	cold shock domain containing E1	protein coding gene	no	.	0.469	1.751	0.000	0.001(13)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SRSF11_LS040	chr1:70250503|70250608:+	SRSF11	serine and arginine rich splicing factor 11	protein coding gene	no	ENST00000370950.7;ENST00000484162.5;ENST00000370949.1;ENST00000463859.5;ENST00000489188.1	99.017	51.018	221.535	0.998(9564)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
SF1_LS039	chr11:64778146|64778362:-	SF1	splicing factor 1	protein coding gene	no	ENST00000413951.5	0.239	0.452	1.036	0.495(4738)	0.504(354)	0.605(10518)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DOCK2_LS055	chr5:170050397|170055305:+	DOCK2	dedicator of cytokinesis 2	protein coding gene	no	ENST00000256935.12;ENST00000520908.6;ENST00000524185.5;ENST00000523351.6	23.171	9.321	5.477	0.816(7814)	0.883(620)	0.901(15663)	non tumor-specific	nAS	yes
UN_RNF187_LS0085	chr1:228494183|228494241:-	RNF187	ring finger protein 187	protein coding gene	no	.	6.062	0.828	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR86_LS001	chr7:151377147|151395776:-	WDR86	WD repeat domain 86	protein coding gene	no	ENST00000463000.1	0.334	0.121	0.688	0.119(1144)	0.137(96)	0.038(664)	non tumor-specific	exon_skip	yes
UPF3A_LS023	chr13:114282943|114291634:+	UPF3A	UPF3A regulator of nonsense mediated mRNA decay	protein coding gene	no	.;.	1.256	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MTMR10_LS006	chr15:30943072|30947130:-	MTMR10	myotubularin related protein 10	protein coding gene	no	ENST00000435680.5;ENST00000568604.5;ENST00000566338.5;ENST00000567567.5	24.278	23.910	22.808	0.976(9354)	0.994(698)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZYX_LS0104	chr7:143388576|143390748:-	ZYX	zyxin	protein coding gene	yes	.	4.189	0.798	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	nAS	no
CACNA1E_LS044	chr1:181781523|181783679:+	CACNA1E	calcium voltage-gated channel subunit alpha1 E	protein coding gene	no	ENST00000367570.5;ENST00000621791.4;ENST00000360108.7;ENST00000367573.6;ENST00000357570.9;ENST00000367567.8;ENST00000621551.3;ENST00000358338.7	4.002	2.512	3.604	0.047(453)	0.01(7)	0.197(3416)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC00322_UP_LS0012	chr21:43359486|43370248:-	LINC00322	long intergenic non-protein coding RNA 322	lncRNA gene	no	.	1.638	0.056	0.000	0.006(62)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL35_LS0024	chr9:124858043|124860201:+	RPL35	ribosomal protein L35	protein coding gene	no	.	61.406	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RMI2_LS0033	chr16:11327543|11328471:-	RMI2	RecQ mediated genome instability 2	protein coding gene	no	.	2.276	0.209	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
BX284668.3_LS001	chr1:16857240|16859049:+	BX284668.3	-	pseudogene	no	ENST00000414128.1	1.513	0.000	0.611	0(2)	0(0)	0.03(525)	non tumor-specific	nAS	yes
SCCPDH_LS003	chr1:246736055|246740172:+	SCCPDH	saccharopine dehydrogenase (putative)	protein coding gene	no	ENST00000366510.3	138.193	101.989	58.731	0.994(9521)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
ATP9B_LS046	chr18:79347925|79359354:+	ATP9B	ATPase phospholipid transporting 9B (putative)	protein coding gene	no	ENST00000590477.5;ENST00000589951.5	0.811	0.844	3.011	0.835(8004)	0.907(637)	0.89(15470)	non tumor-specific	exon_skip	yes
UN_THUMPD3-AS1_LS0001	chr3:9379670|9388087:-	THUMPD3-AS1	THUMPD3 antisense RNA 1	lncRNA gene	no	.	2.109	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
GCN1_LS035	chr12:120160023|120160142:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6;ENST00000547369.5;ENST00000550471.1	30.221	18.321	16.464	0.958(9180)	0.983(690)	0.971(16877)	non tumor-specific	nAS	yes
UN_MIR663AHG_UP_LS0004	chr20:28559627|28563830:-	MIR663AHG	MIR663A host gene	lncRNA gene	no	.	1.926	0.238	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
FGFR1_LS019	chr8:38418373|38419539:-	FGFR1	fibroblast growth factor receptor 1	protein coding gene	yes	ENST00000649678.1;ENST00000532791.5;ENST00000335922.9;ENST00000527114.5	12.746	8.779	16.914	0.905(8668)	0.949(666)	0.953(16567)	non tumor-specific	alt_5prime	yes
ACOX2_LS003	chr3:58509025|58510979:-	ACOX2	acyl-CoA oxidase 2	protein coding gene	no	ENST00000460921.1	0.778	0.499	0.725	0.036(343)	0.088(62)	0.084(1460)	non tumor-specific	alt_3prime;exon_skip	yes
SLC36A1_LS016	chr5:151465169|151467199:+	SLC36A1	solute carrier family 36 member 1	protein coding gene	no	ENST00000520701.5;ENST00000429484.6;ENST00000243389.7;ENST00000616007.4;ENST00000521925.5	8.915	6.014	5.423	0.832(7970)	0.84(590)	0.953(16564)	non tumor-specific	nAS	yes
UN_SLC47A2_LS0021	chr17:19711812|19712703:-	SLC47A2	solute carrier family 47 member 2	protein coding gene	no	.	3.340	1.222	0.000	0.016(155)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC021097.2_LS006	chr7:151215082|151215604:-	AC021097.2	-	protein coding gene	no	ENST00000222388.6	144.697	63.911	60.680	0.997(9552)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL133415.1_UP_LS0007	chr10:17453657|17454620:-	AL133415.1	-	lncRNA gene	no	.	2.318	0.969	0.000	0.006(61)	0.009(6)	0(0)	non tumor-specific	nAS	no
ARFGEF1_LS030	chr8:67266984|67267091:-	ARFGEF1	ADP ribosylation factor guanine nucleotide exchange factor 1	protein coding gene	no	ENST00000520381.5;ENST00000262215.7	21.004	14.271	10.493	0.89(8529)	0.964(677)	0.961(16707)	non tumor-specific	nAS	yes
TMEM167A_LS005	chr5:83065117|83071363:-	TMEM167A	transmembrane protein 167A	protein coding gene	no	ENST00000511450.5	0.239	0.399	0.611	0.032(303)	0.03(21)	0.036(631)	non tumor-specific	exon_skip	yes
GREB1L_LS003	chr18:21366136|21383510:+	GREB1L	GREB1 like retinoic acid receptor coactivator	protein coding gene	no	ENST00000584446.5;ENST00000424526.5;ENST00000269218.10;ENST00000578368.5	1.566	0.460	1.333	0.133(1275)	0.168(118)	0.447(7770)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZCCHC14_LS0003	chr16:87406960|87407678:-	ZCCHC14	zinc finger CCHC-type containing 14	protein coding gene	no	.	2.481	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ORMDL3_LS019	chr17:39925371|39925623:-	ORMDL3	ORMDL sphingolipid biosynthesis regulator 3	protein coding gene	no	ENST00000394169.5	0.101	0.000	0.672	0(4)	0(0)	0.034(589)	non tumor-specific	exon_skip	yes
SUPV3L1_LS023	chr10:69207941|69208600:+	SUPV3L1	Suv3 like RNA helicase	protein coding gene	no	ENST00000359655.8;ENST00000497254.1	71.972	34.289	52.933	0.985(9442)	0.981(689)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_COQ8A_LS0008	chr1:226899555|226900060:+	COQ8A	coenzyme Q8A	protein coding gene	no	.	2.461	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
RGL4_LS013	chr22:23697245|23697838:+	RGL4	ral guanine nucleotide dissociation stimulator like 4	protein coding gene	yes	ENST00000441897.5;ENST00000401461.5;ENST00000612432.4;ENST00000615003.4;ENST00000290691.9;ENST00000460003.4;ENST00000423392.5;ENST00000467354.2;ENST00000452208.1	3.484	1.388	1.494	0.483(4624)	0.564(396)	0.502(8722)	non tumor-specific	nAS	yes
A2ML1_LS010	chr12:8838450|8839113:+	A2ML1	alpha-2-macroglobulin like 1	protein coding gene	no	ENST00000299698.11	16.884	208.740	1.948	0.215(2062)	0.091(64)	0.356(6193)	non tumor-specific	nAS	yes
ALMS1_LS034	chr2:73609682|73610437:+	ALMS1	ALMS1 centrosome and basal body associated protein	protein coding gene	no	ENST00000490821.1	0.182	0.115	1.139	0.49(4693)	0.472(331)	0.556(9673)	non tumor-specific	exon_skip	yes
UN_ACYP1_LS0004	chr14:75056560|75061684:-	ACYP1	acylphosphatase 1	protein coding gene	no	.	4.095	0.114	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALX3_LS002	chr1:110061563|110064587:-	ALX3	ALX homeobox 3	protein coding gene	no	ENST00000647563.1;ENST00000369792.4;ENST00000649954.1	4.585	0.267	1.127	0.169(1616)	0.041(29)	0.148(2576)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRADD_LS0004	chr12:93679072|93712906:+	CRADD	CASP2 and RIPK1 domain containing adaptor with death domain	protein coding gene	no	.	6.546	0.807	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
C15orf41_LS022	chr15:36697390|36709223:+	C15orf41	CDAN1 interacting nuclease 1	protein coding gene	no	ENST00000566621.5;ENST00000570265.6;ENST00000569302.6;ENST00000643785.1;ENST00000642817.1;ENST00000646533.1;ENST00000646657.1;ENST00000437989.6;ENST00000566807.5;ENST00000643612.1;ENST00000567389.5;ENST00000562877.5;ENST00000338183.8;ENST00000565792.5	9.292	5.973	7.777	0.926(8874)	0.957(672)	0.952(16542)	non tumor-specific	exon_skip	yes
UN_HSD17B7_LS0001	chr1:162790835|162792731:+	HSD17B7	hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2	protein coding gene	no	.	1.515	0.094	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
TCF7_LS035	chr5:134144869|134146201:+	TCF7	transcription factor 7	protein coding gene	no	ENST00000378560.8	0.424	0.050	0.929	0.043(413)	0.031(22)	0.128(2224)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
STK25_LS039	chr2:241508135|241508443:-	STK25	serine/threonine kinase 25	protein coding gene	no	ENST00000316586.8;ENST00000405883.7;ENST00000452891.5;ENST00000426941.1	4.121	2.811	30.835	0.961(9203)	0.954(670)	0.979(17009)	non tumor-specific	alt_5prime;exon_skip	yes
GOLGB1_LS001	chr3:121664614|121664926:-	GOLGB1	golgin B1	protein coding gene	no	ENST00000340645.9;ENST00000393667.7;ENST00000614479.4;ENST00000482512.5;ENST00000491690.1	98.751	54.356	104.976	0.995(9534)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_LINC01740_UP_LS0002	chr1:212421663|212442565:+	LINC01740	long intergenic non-protein coding RNA 1740	lncRNA gene	no	.	15.142	2.300	0.000	0.052(494)	0.081(57)	0(0)	non tumor-specific	nAS	no
SMC6_LS016	chr2:17708753|17714861:-	SMC6	structural maintenance of chromosomes 6	protein coding gene	no	ENST00000448223.6;ENST00000351948.8;ENST00000402989.5;ENST00000446852.5	28.099	11.532	14.420	0.959(9187)	0.984(691)	0.974(16935)	non tumor-specific	alt_3prime;exon_skip	yes
USP54_LS049	chr10:73575675|73625937:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	.;.	7.664	0.323	0.000	0.017(164)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BTBD8_LS0007	chr1:92102669|92129687:+	BTBD8	BTB domain containing 8	protein coding gene	no	.	1.413	0.213	0.000	0.004(42)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
PCBP1-AS1_LS050	chr2:70015517|70015838:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000626343.2	0.657	0.000	0.759	0(2)	0(0)	0.064(1106)	non tumor-specific	nAS	yes
DNAH3_LS029	chr16:21036848|21037761:-	DNAH3	dynein axonemal heavy chain 3	protein coding gene	no	ENST00000261383.3;ENST00000572640.5;ENST00000572931.1	1.851	1.135	1.740	0.22(2110)	0.155(109)	0.169(2937)	non tumor-specific	exon_skip	yes
AC024405.2_LS005	chr11:50320998|50353985:+	AC024405.2	-	pseudogene	no	ENST00000528459.1	0.919	0.000	0.696	0.003(32)	0(0)	0.015(255)	non tumor-specific	nAS	yes
JPT1_LS003	chr17:75146684|75147520:-	JPT1	Jupiter microtubule associated homolog 1	protein coding gene	no	ENST00000581874.1	2.520	2.191	0.726	0.602(5770)	0.362(254)	0.148(2568)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF821_LS001	chr16:71860672|71861776:-	ZNF821	zinc finger protein 821	protein coding gene	no	ENST00000568961.5;ENST00000313565.10;ENST00000425432.5;ENST00000566987.5;ENST00000446827.6;ENST00000565601.5;ENST00000562808.5;ENST00000568666.5;ENST00000565516.5;ENST00000562797.5;ENST00000563878.5	12.160	7.338	11.758	0.957(9173)	0.973(683)	0.976(16972)	non tumor-specific	exon_skip	yes
UN_DHRS4L1_UP_LS0164	chr14:23966301|24001040:+	DHRS4L1	dehydrogenase/reductase 4 like 1	pseudogene	no	.	13.515	3.206	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	nAS	no
TTN_LS182	chr2:178657961|178658077:-	TTN	titin	protein coding gene	no	ENST00000589042.5	210.135	0.868	0.879	0.001(8)	0.006(4)	0.083(1449)	non tumor-specific	nAS	yes
IKBKG_LS040	chrX:154564020|154564319:+	IKBKG	inhibitor of nuclear factor kappa B kinase regulatory subunit gamma	protein coding gene	no	ENST00000618670.4;ENST00000612051.1;ENST00000594239.5;ENST00000619941.4;ENST00000615874.4;ENST00000617207.4;ENST00000611176.4;ENST00000611071.4	29.409	14.490	0.744	0.975(9342)	0.986(692)	0.286(4975)	non tumor-specific	alt_3prime	yes
UN_SOD1_LS0008	chr21:31663886|31666464:+	SOD1	superoxide dismutase 1	protein coding gene	no	.	342.711	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TWIST2_LS0006	chr2:238848733|238909355:+	TWIST2	twist family bHLH transcription factor 2	protein coding gene	yes	.	2.187	0.075	0.000	0.002(15)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_IGKC_UP_LS0006	chr2:88857683|88862719:-	IGKC	immunoglobulin kappa constant	no	no	.	301.138	101.990	0.000	0.003(24)	0.014(10)	0(0)	non tumor-specific	nAS	no
MYCBPAP_LS022	chr17:50526267|50527264:+	MYCBPAP	MYCBP associated protein	protein coding gene	no	ENST00000485169.1	0.715	0.266	0.813	0.039(376)	0.027(19)	0.21(3653)	non tumor-specific	alt_3prime	yes
RAB7B_LS008	chr1:205994151|206003253:-	RAB7B	RAB7B, member RAS oncogene family	protein coding gene	no	ENST00000617070.4;ENST00000623893.1	12.192	6.688	5.251	0.785(7517)	0.816(573)	0.785(13649)	non tumor-specific	nAS	yes
CFAP300_LS005	chr11:102066651|102075873:+	CFAP300	cilia and flagella associated protein 300	protein coding gene	no	ENST00000434758.6;ENST00000526781.5;ENST00000530659.1;ENST00000529204.1	5.118	4.058	3.578	0.798(7647)	0.86(604)	0.801(13917)	non tumor-specific	exon_skip	yes
PRSS21_LS003	chr16:2817456|2817801:+	PRSS21	serine protease 21	protein coding gene	no	ENST00000450020.7;ENST00000005995.7;ENST00000570629.5;ENST00000570594.5;ENST00000574813.5	4.586	0.585	1.205	0.392(3754)	0.429(301)	0.321(5585)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HTR1D_LS0002	chr1:23192832|23193077:-	HTR1D	5-hydroxytryptamine receptor 1D	protein coding gene	no	.	5.449	1.064	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
AC068946.2_LS003	chr2:219210475|219210711:-	AC068946.2	-	protein coding gene	no	ENST00000446716.5	65.179	29.353	43.430	0.994(9521)	0.996(699)	0.979(17021)	non tumor-specific	intron_retention	yes
UN_AC092326.1_UP_LS0036	chr16:16347510|16390834:+	AC092326.1	-	lncRNA gene	no	.	16.691	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACADVL_LS0036	chr17:7223245|7223631:-	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	.	1.839	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SAP130_LS0007	chr2:127942985|127945456:-	SAP130	splicing factor 3b subunit 3	protein coding gene	no	.	2.539	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGAP11B_LS002	chr15:30624816|30625354:+	ARHGAP11B	Rho GTPase activating protein 11B	protein coding gene	no	ENST00000567449.5	0.658	0.289	0.703	0.465(4452)	0.472(331)	0.193(3362)	non tumor-specific	intron_retention	yes
NLRC5_LS064	chr16:57061701|57065212:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	ENST00000262510.10;ENST00000436936.5;ENST00000539144.5;ENST00000545081.5;ENST00000538453.5	13.952	5.575	8.906	0.912(8736)	0.906(636)	0.957(16629)	non tumor-specific	alt_3prime;exon_skip	yes
CTH_LS002	chr1:70416037|70417937:+	CTH	V-set and immunoglobulin domain containing 2	protein coding gene	no	ENST00000370938.7;ENST00000346806.2	7.485	12.406	3.817	0.829(7938)	0.926(650)	0.891(15480)	non tumor-specific	exon_skip	yes
CASP8AP2_LS003	chr6:89830106|89846562:+	CASP8AP2	caspase 8 associated protein 2	protein coding gene	no	ENST00000551025.3;ENST00000237177.10	0.958	0.591	0.772	0.402(3850)	0.523(367)	0.344(5975)	non tumor-specific	nAS	yes
SHPRH_LS002	chr6:145886440|145888020:-	SHPRH	SNF2 histone linker PHD RING helicase	protein coding gene	yes	ENST00000438092.6	2.568	0.000	0.666	0.003(28)	0(0)	0.073(1277)	non tumor-specific	alt_3prime	yes
RPRD1B_LS020	chr20:38086846|38089726:+	RPRD1B	regulation of nuclear pre-mRNA domain containing 1B	protein coding gene	no	.;.;.	2.593	1.062	0.000	0.005(46)	0.03(21)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
RREB1_LS001	chr6:7107768|7176655:+	RREB1	ras responsive element binding protein 1	protein coding gene	no	ENST00000379933.7	0.110	0.049	0.679	0.39(3736)	0.457(321)	0.181(3153)	non tumor-specific	exon_skip	yes
UN_PLA2G4C_LS0002	chr19:48055049|48061570:-	PLA2G4C	phospholipase A2 group IVC	protein coding gene	no	.	3.846	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPS31P1_UP_LS0033	chr3:41086938|41087954:+	MRPS31P1	mitochondrial ribosomal protein S31 pseudogene 1	pseudogene	no	.	1.754	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MST1R_LS0009	chr3:49891019|49891197:-	MST1R	macrophage stimulating 1 receptor	protein coding gene	yes	.	8.930	0.202	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UQCRQ_LS008	chr5:132867035|132867488:+	UQCRQ	ubiquinol-cytochrome c reductase complex III subunit VII	protein coding gene	no	ENST00000378670.7;ENST00000378667.1;ENST00000378665.1	427.430	242.104	513.909	0.998(9561)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL512506.3_LS005	chr13:43906952|43908684:+	AL512506.3	-	protein coding gene	no	ENST00000627615.1	1.398	0.160	0.781	0.003(29)	0.003(2)	0.125(2180)	non tumor-specific	nAS	yes
UN_PASK_LS0044	chr2:241140750|241142837:-	PASK	PAS domain containing serine/threonine kinase	protein coding gene	no	.	1.172	0.087	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
LINC02318_LS001	chr14:95573682|95577429:+	LINC02318	long intergenic non-protein coding RNA 2318	lncRNA gene	no	ENST00000553785.1	0.219	0.006	0.688	0.004(39)	0.003(2)	0.003(54)	non tumor-specific	nAS	yes
MYO19_LS045	chr17:36513505|36513629:-	MYO19	myosin XIX	protein coding gene	no	ENST00000614623.4;ENST00000610992.4;ENST00000621550.4;ENST00000610930.4;ENST00000620413.1;ENST00000621344.4;ENST00000620640.4	30.815	10.632	19.500	0.994(9528)	0.993(697)	0.977(16985)	non tumor-specific	alt_3prime;exon_skip	yes
SEC11A_LS002	chr15:84670069|84680713:-	SEC11A	SEC11 homolog A, signal peptidase complex subunit	protein coding gene	no	ENST00000558134.5	2.714	3.791	1.565	0.882(8450)	0.873(613)	0.775(13478)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SHPRH_LS0010	chr6:145894972|145910448:-	SHPRH	SNF2 histone linker PHD RING helicase	protein coding gene	yes	.	2.869	0.508	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_BBS9_LS0028	chr7:33365678|33367767:+	BBS9	Bardet-Biedl syndrome 9	protein coding gene	no	.	3.165	0.116	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ACSS3_LS011	chr12:81174939|81199341:+	ACSS3	acyl-CoA synthetase short chain family member 3	protein coding gene	no	ENST00000548058.5;ENST00000261206.7;ENST00000548324.5;ENST00000551745.1;ENST00000546664.2	26.228	27.418	13.028	0.83(7953)	0.944(663)	0.93(16165)	non tumor-specific	exon_skip	yes
PLEKHA5_LS032	chr12:19290796|19320562:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	.;.	1.789	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
NEPRO_LS033	chr3:113014032|113017448:-	NEPRO	nucleolus and neural progenitor protein	protein coding gene	no	ENST00000314400.9;ENST00000383675.6;ENST00000486271.5;ENST00000461381.5;ENST00000496206.5;ENST00000494575.5;ENST00000496340.1;ENST00000472166.1	9.796	5.092	9.660	0.965(9244)	0.989(694)	0.971(16880)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ULK1_LS0025	chr12:131917821|131918497:+	ULK1	unc-51 like autophagy activating kinase 1	protein coding gene	no	.	4.384	0.181	0.000	0.006(60)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ADCY10P1_LS015	chr6:41119463|41120523:+	ADCY10P1	ADCY10 pseudogene 1	pseudogene	no	ENST00000567255.2	1.894	0.174	0.972	0.004(40)	0.004(3)	0.415(7212)	non tumor-specific	nAS	yes
UN_KALRN_LS0078	chr3:124630123|124632420:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	1.280	0.264	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1086P_UP_LS0008	chr8:27633695|27634044:+	RNU6-1086P	RNA, U6 small nuclear 1086, pseudogene	small non-coding RNA gene	no	.	0.995	0.381	0.000	0.006(61)	0.007(5)	0(0)	non tumor-specific	nAS	no
AL590399.1_LS002	chr9:62375528|62376253:-	AL590399.1	-	lncRNA gene	no	ENST00000429818.1;ENST00000430302.1	0.547	0.363	0.710	0.104(992)	0.094(66)	0.115(2005)	non tumor-specific	nAS	yes
WASHC2C_LS011	chr10:45750838|45751482:+	WASHC2C	WASH complex subunit 2C	protein coding gene	no	ENST00000359860.7;ENST00000374362.6;ENST00000540872.6;ENST00000336378.8;ENST00000623400.3;ENST00000420848.3	22.227	18.089	15.014	0.941(9018)	0.986(692)	0.976(16963)	non tumor-specific	alt_3prime;exon_skip	yes
SLC31A2_LS006	chr9:113161698|113162749:+	SLC31A2	solute carrier family 31 member 2	protein coding gene	no	ENST00000259392.7;ENST00000374220.3	8.507	11.045	19.978	0.942(9028)	0.98(688)	0.979(17010)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UFSP2_LS001	chr4:185400478|185403494:-	UFSP2	UFM1 specific peptidase 2	protein coding gene	no	ENST00000514247.5;ENST00000264689.10;ENST00000510206.5;ENST00000510755.5;ENST00000511485.5	35.422	29.207	55.889	0.911(8732)	0.93(653)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip	yes
NEURL4_LS016	chr17:7322866|7322948:-	NEURL4	neuralized E3 ubiquitin protein ligase 4	protein coding gene	no	ENST00000399464.6;ENST00000573186.5;ENST00000571887.5;ENST00000571508.5;ENST00000573651.5	9.605	6.262	20.300	0.941(9011)	0.952(668)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime	yes
ABCC9_LS047	chr12:21940825|21942335:-	ABCC9	ATP binding cassette subfamily C member 9	protein coding gene	no	ENST00000636888.1	0.534	0.000	0.597	0(1)	0(0)	0.015(256)	non tumor-specific	nAS	yes
UN_MIR100HG_LS0010	chr11:122064271|122100374:-	MIR100HG	mir-100-let-7a-2-mir-125b-1 cluster host gene	lncRNA gene	yes	.	4.093	0.093	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KCNK6_LS0011	chr19:38324485|38326593:+	KCNK6	potassium two pore domain channel subfamily K member 6	protein coding gene	no	.	2.937	0.531	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CLEC18B_UP_LS0002	chr16:74424249|74451055:-	CLEC18B	C-type lectin domain family 18 member B	protein coding gene	no	.	1.915	0.893	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SNTG1_LS017	chr8:50449725|50450556:+	SNTG1	syntrophin gamma 1	protein coding gene	no	ENST00000518864.5;ENST00000642720.1;ENST00000642164.1;ENST00000644093.1;ENST00000642286.1;ENST00000643999.1;ENST00000522124.5;ENST00000647073.1;ENST00000643408.1;ENST00000644469.1;ENST00000644723.1;ENST00000517473.5;ENST00000642826.1;ENST00000643740.1;ENST00000647273.1;ENST00000520825.5	7.664	0.738	4.812	0.089(855)	0.013(9)	0.209(3629)	non tumor-specific	nAS	yes
UN_IWS1_LS0031	chr2:127505210|127505328:-	IWS1	interacts with SUPT6H, CTD assembly factor 1	protein coding gene	no	.	7.413	1.483	0.000	0.01(92)	0.014(10)	0(0)	non tumor-specific	intron_retention	no
UN_AL136018.1_LS0033	chr14:24634577|24643265:+	AL136018.1	-	lncRNA gene	no	.	1.339	0.095	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PDE10A_LS0080	chr6:165940766|165944022:-	PDE10A	phosphodiesterase 10A	protein coding gene	no	.	3.100	0.089	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
COLEC12_LS001	chr18:316963|317099:-	COLEC12	collectin subfamily member 12	protein coding gene	no	ENST00000580242.1	0.300	0.197	0.767	0.314(3004)	0.464(326)	0.191(3326)	non tumor-specific	nAS	yes
GOLGA8R_LS005	chr15:30405198|30405630:-	GOLGA8R	golgin A8 family member R	protein coding gene	no	ENST00000327271.10	1.312	0.642	0.961	0.176(1683)	0.298(209)	0.397(6892)	non tumor-specific	exon_skip	yes
UN_AC234781.2_UP_LS0004	chrX:155299145|155366648:-	AC234781.2	-	pseudogene	no	.	2.043	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	nAS	no
RCBTB1_LS006	chr13:49544863|49549458:-	RCBTB1	RCC1 and BTB domain containing protein 1	protein coding gene	no	ENST00000258646.3;ENST00000378302.6	11.597	8.540	9.365	0.936(8964)	0.967(679)	0.965(16780)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PRMT7_LS0007	chr16:68339563|68339793:+	PRMT7	protein arginine methyltransferase 7	protein coding gene	no	.	7.179	0.601	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
IFNG-AS1_LS005	chr12:68013648|68019862:+	IFNG-AS1	IFNG antisense RNA 1	lncRNA gene	no	ENST00000541715.5	0.229	0.022	0.651	0.007(63)	0.004(3)	0.014(241)	non tumor-specific	nAS	yes
PLCH2_LS002	chr1:2430629|2478476:+	PLCH2	phospholipase C eta 2	protein coding gene	no	ENST00000609981.5	5.444	4.598	2.369	0.349(3346)	0.37(260)	0.496(8618)	non tumor-specific	alt_5prime	yes
MLC1_LS015	chr22:50083173|50084726:-	MLC1	modulator of VRAC current 1	protein coding gene	no	ENST00000395876.6;ENST00000311597.9;ENST00000395876.6;ENST00000311597.9	33.077	12.342	2.629	0.159(1521)	0.181(127)	0.469(8159)	non tumor-specific	alt_5prime;exon_skip	yes
SNX6_LS001	chr14:34563175|34567686:-	SNX6	sorting nexin 6	protein coding gene	no	ENST00000396526.7;ENST00000362031.8;ENST00000556162.5	152.145	90.725	74.023	0.982(9405)	0.99(695)	0.979(17021)	non tumor-specific	exon_skip	yes
DCT_LS014	chr13:94444436|94445689:-	DCT	dopachrome tautomerase	protein coding gene	no	ENST00000483392.6;ENST00000483392.6;ENST00000483392.6	0.144	0.000	0.650	0.035(338)	0.001(1)	0.015(258)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AC069360.1_LS001	chr11:10885124|10899132:-	AC069360.1	-	lncRNA gene	no	ENST00000503469.2	1.382	0.533	1.102	0.438(4198)	0.42(295)	0.286(4969)	non tumor-specific	nAS	yes
UN_TBC1D8_UP_LS0004	chr2:101266256|101271019:-	TBC1D8	TBC1 domain family member 8	protein coding gene	no	.	0.761	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TOP1MT_LS0045	chr8:143331339|143334075:-	TOP1MT	DNA topoisomerase I mitochondrial	protein coding gene	no	.	1.910	0.366	0.000	0.01(97)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ZNF304_LS0026	chr19:57357457|57357626:-	ZNF304	zinc finger protein 304	protein coding gene	no	.	1.748	0.380	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL355677.1_UP_LS0009	chr13:88852599|89142035:-	AL355677.1	-	lncRNA gene	no	.	2.365	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MED21_LS014	chr12:27046232|27060905:+	MED21	mediator complex subunit 21	protein coding gene	no	.;.	2.151	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
AL606760.2_LS001	chr1:53210212|53210290:-	AL606760.2	-	lncRNA gene	no	ENST00000629810.1	0.321	0.461	1.736	0.385(3685)	0.604(424)	0.811(14089)	non tumor-specific	nAS	yes
CLDN19_LS005	chr1:42738585|42739841:-	CLDN19	claudin 19	protein coding gene	no	ENST00000296387.5;ENST00000539749.5;ENST00000372539.3	2.923	21.077	1.234	0.115(1101)	0.319(224)	0.215(3745)	non tumor-specific	nAS	yes
UN_AL137847.3_UP_LS0022	chr9:83063418|83064750:+	AL137847.3	-	pseudogene	no	.	0.530	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NUP210_LS0027	chr3:13323579|13325795:-	NUP210	nucleoporin 210	protein coding gene	no	.	3.425	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_RNF128_LS0002	chrX:106716781|106720024:+	RNF128	ring finger protein 128	protein coding gene	no	.	3.945	2.996	0.000	0.002(20)	0.021(15)	0(0)	non tumor-specific	nAS	no
AC083973.1_LS002	chr8:42249361|42263329:-	AC083973.1	-	lncRNA gene	no	ENST00000521470.1	0.236	0.080	0.690	0.15(1436)	0.078(55)	0.053(913)	non tumor-specific	nAS	yes
UN_PRKCB_LS0011	chr16:24108994|24109044:-	PRKCB	protein kinase C beta	protein coding gene	yes	.	1.647	0.316	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00460_LS0006	chr13:106378067|106381087:+	LINC00460	long intergenic non-protein coding RNA 460	lncRNA gene	no	.	4.279	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
RASA2_LS009	chr3:141558962|141559894:+	RASA2	RAS p21 protein activator 2	protein coding gene	no	ENST00000286364.7;ENST00000452898.2	7.547	4.807	7.416	0.805(7708)	0.91(639)	0.947(16461)	non tumor-specific	nAS	yes
UN_AC112698.1_UP_LS0004	chr4:183464933|183471514:-	AC112698.1	-	pseudogene	no	.	1.800	0.485	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC125238.1_UP_LS0004	chr2:203672974|203687987:-	AC125238.1	-	pseudogene	no	.	2.800	1.488	0.000	0.008(81)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NTRK2_LS0008	chr9:84672171|84702159:+	NTRK2	neurotrophic receptor tyrosine kinase 2	protein coding gene	no	.	2.080	0.721	0.000	0.004(38)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC003688.1_LS0064	chr17:7261975|7262029:+	AC003688.1	-	protein coding gene	no	.	10.270	0.705	0.000	0.025(239)	0.009(6)	0(0)	non tumor-specific	nAS	no
TUBG1_LS007	chr17:42612143|42612947:+	TUBG1	tubulin gamma 1	protein coding gene	no	ENST00000589688.1	15.550	6.693	0.708	0.931(8921)	0.913(641)	0.158(2741)	non tumor-specific	alt_3prime;exon_skip	yes
CMTM5_LS013	chr14:23378501|23379031:+	CMTM5	CKLF like MARVEL transmembrane domain containing 5	protein coding gene	yes	ENST00000649278.1;ENST00000359320.7;ENST00000553750.1;ENST00000555731.5	14.749	5.641	5.026	0.225(2156)	0.571(401)	0.825(14348)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PRMT7_LS0019	chr16:68352315|68353395:+	PRMT7	protein arginine methyltransferase 7	protein coding gene	no	.	5.931	1.292	0.000	0.028(265)	0.058(41)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
AC009063.2_LS003	chr16:83725588|83728868:-	AC009063.2	-	lncRNA gene	no	ENST00000563981.5;ENST00000570056.1	0.740	1.790	2.398	0.019(181)	0.004(3)	0.095(1645)	non tumor-specific	nAS	yes
SRSF9_LS001	chr12:120462162|120463950:-	SRSF9	serine and arginine rich splicing factor 9	protein coding gene	no	ENST00000229390.7;ENST00000548792.1;ENST00000603963.1	405.945	180.199	276.625	0.965(9242)	0.96(674)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNU7-164P_UP_LS0001	chrX:40552812|40553468:-	RNU7-164P	RNA, U7 small nuclear 164 pseudogene	small non-coding RNA gene	no	.	3.960	0.856	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PPM1K_LS0037	chr4:88274531|88277143:-	PPM1K	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein coding gene	no	.	1.813	0.520	0.000	0.009(83)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NR2F2-AS1_LS024	chr15:96285459|96290630:-	NR2F2-AS1	NR2F2 antisense RNA 1	lncRNA gene	no	ENST00000502125.6;ENST00000558929.5;ENST00000557863.5;ENST00000560170.1	0.258	0.849	3.702	0.538(5158)	0.816(573)	0.803(13951)	non tumor-specific	nAS	yes
PPP1R9B_LS018	chr17:50143718|50145113:-	PPP1R9B	protein phosphatase 1 regulatory subunit 9B	protein coding gene	no	ENST00000612501.1;ENST00000513579.1	124.163	75.595	65.343	0.994(9519)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime	yes
GLIPR2_LS009	chr9:36142091|36147786:+	GLIPR2	GLI pathogenesis related 2	protein coding gene	no	.;.	2.700	0.491	0.000	0.022(209)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
AC063952.4_LS002	chr3:120366543|120367878:-	AC063952.4	-	lncRNA gene	no	ENST00000634744.1	0.868	0.000	0.625	0.002(16)	0(0)	0.003(48)	non tumor-specific	nAS	yes
SH3BP2_LS025	chr4:2824730|2827230:+	SH3BP2	SH3 domain binding protein 2	protein coding gene	no	.;.	1.865	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CFAP46_LS027	chr10:132859247|132860417:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	ENST00000368586.9	1.499	0.928	2.138	0.013(123)	0.063(44)	0.177(3082)	non tumor-specific	intron_retention	yes
EXT1_LS014	chr8:117837201|118110085:-	EXT1	exostosin glycosyltransferase 1	protein coding gene	yes	ENST00000378204.6;ENST00000436216.2	46.473	31.931	25.976	0.971(9305)	0.993(697)	0.977(16985)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FAM25C_LS0003	chr10:47997739|47998931:-	FAM25C	family with sequence similarity 25 member C	protein coding gene	no	.	4.299	1.571	0.000	0.023(219)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
TATDN3_LS020	chr1:212807848|212812248:+	TATDN3	TatD DNase domain containing 3	protein coding gene	no	ENST00000366974.8;ENST00000526641.5;ENST00000533650.5;ENST00000525574.5	11.578	8.573	8.184	0.972(9315)	0.986(692)	0.974(16926)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DYNC1H1_LS017	chr14:102000144|102000286:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	ENST00000360184.9;ENST00000643684.1	21.519	18.151	17.768	0.883(8461)	0.957(672)	0.964(16761)	non tumor-specific	nAS	yes
INF2_LS007	chr14:104707051|104707253:+	INF2	inverted formin 2	protein coding gene	no	ENST00000330634.11;ENST00000392634.8	32.646	24.515	48.033	0.984(9431)	0.994(698)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip	yes
NRXN3_LS029	chr14:79298908|79467221:+	NRXN3	neurexin 3	protein coding gene	no	ENST00000553803.5	0.757	0.000	0.715	0.001(10)	0(0)	0.007(117)	non tumor-specific	nAS	yes
UN_EDDM3B_UP_LS0005	chr14:20755632|20755830:+	EDDM3B	epididymal protein 3B	protein coding gene	no	.	1.862	0.231	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ERO1A_LS0042	chr14:52666495|52667187:-	ERO1A	endoplasmic reticulum oxidoreductase 1 alpha	protein coding gene	no	.	1.468	0.281	0.000	0.004(37)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_AC093484.2_LS0001	chr17:16415207|16415772:+	AC093484.2	-	lncRNA gene	no	.	1.263	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDE4DIP_LS0057	chr1:149009791|149016299:+	PDE4DIP	phosphodiesterase 4D interacting protein	protein coding gene	no	.	3.115	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
PACS1_LS005	chr11:66193573|66210362:+	PACS1	phosphofurin acidic cluster sorting protein 1	protein coding gene	no	ENST00000527224.1;ENST00000320580.8;ENST00000533756.5;ENST00000527380.1	33.458	21.702	30.195	0.964(9235)	0.986(692)	0.978(17006)	non tumor-specific	alt_3prime	yes
UN_FBXW9_LS0001	chr19:12689841|12689962:-	FBXW9	F-box and WD repeat domain containing 9	protein coding gene	no	.	6.918	0.378	0.000	0.008(74)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
GPM6A_LS018	chr4:175701767|175891463:-	GPM6A	glycoprotein M6A	protein coding gene	yes	ENST00000507540.1	0.032	0.079	3.085	0.08(768)	0.118(83)	0.099(1719)	non tumor-specific	exon_skip;mutex_exons	yes
DUSP15_LS016	chr20:31867153|31869564:-	DUSP15	dual specificity phosphatase 15	protein coding gene	no	ENST00000278979.7;ENST00000398083.5;ENST00000486996.5;ENST00000398084.6;ENST00000375966.8;ENST00000339738.9;ENST00000459848.5;ENST00000493115.1	38.652	12.619	7.733	0.742(7113)	0.815(572)	0.884(15363)	non tumor-specific	exon_skip	yes
WFDC6_LS002	chr20:45535329|45537964:-	WFDC6	WAP four-disulfide core domain 6	protein coding gene	no	ENST00000372665.3	0.328	0.005	0.619	0.001(6)	0.001(1)	0.001(10)	non tumor-specific	nAS	yes
UN_SLC38A11_LS0021	chr2:164935502|164937350:-	SLC38A11	solute carrier family 38 member 11	protein coding gene	no	.	3.222	0.211	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
BCR_LS016	chr22:23273133|23273634:+	BCR	BCR activator of RhoGEF and GTPase	protein coding gene	yes	ENST00000305877.12;ENST00000359540.7;ENST00000427791.1	79.807	51.764	45.406	0.991(9493)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
CYP2D6_LS017	chr22:42129185|42129738:-	CYP2D6	cytochrome P450 family 2 subfamily D member 6	protein coding gene	no	ENST00000645361.1;ENST00000645508.1;ENST00000360608.9;ENST00000389970.7;ENST00000488442.1	4.337	12.678	1.591	0.271(2601)	0.221(155)	0.584(10155)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_EFCAB10_UP_LS0002	chr7:105876585|105877159:-	EFCAB10	EF-hand calcium binding domain 10	protein coding gene	no	.	0.574	1.040	0.000	0.005(49)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CTSZ_LS0030	chr20:59006460|59007006:+	CTSZ	cathepsin Z	protein coding gene	yes	.	4.319	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HEATR4_LS0004	chr14:73492341|73493066:-	HEATR4	HEAT repeat containing 4	protein coding gene	no	.	1.186	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_CLTC_LS0005	chr17:59620294|59644276:+	CLTC	clathrin heavy chain	protein coding gene	no	.	19.609	1.424	0.000	0.007(66)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_VPS13B_LS0137	chr8:99784476|99817540:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	.	0.929	0.020	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_PDE6B_LS0032	chr4:662148|662539:-	PDE6B	phosphodiesterase 6B	protein coding gene	no	.	3.437	1.771	0.000	0.141(1355)	0.242(170)	0(0)	non tumor-specific	nAS	no
GPATCH2L_LS021	chr14:76195972|76201691:+	GPATCH2L	G-patch domain containing 2 like	protein coding gene	no	ENST00000554375.5;ENST00000312858.9;ENST00000261530.11;ENST00000621494.1	8.591	4.824	5.459	0.848(8126)	0.887(623)	0.961(16702)	non tumor-specific	exon_skip	yes
UN_ZNF253_LS0016	chr19:19891805|19891974:-	ZNF253	zinc finger protein 253	protein coding gene	no	.	2.630	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MROH1_LS0103	chr8:144248277|144248877:+	MROH1	maestro heat like repeat family member 1	protein coding gene	no	.	2.175	0.248	0.000	0.023(224)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
PNPLA2_LS009	chr11:821860|821958:+	PNPLA2	patatin like phospholipase domain containing 2	protein coding gene	no	ENST00000336615.8;ENST00000525250.5;ENST00000534561.1	189.461	173.448	281.255	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
IL11RA_LS029	chr9:34660600|34661482:+	IL11RA	interleukin 11 receptor subunit alpha	protein coding gene	no	.;.	6.773	1.052	0.000	0.009(88)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRKG2_LS003	chr4:81104432|81105813:-	PRKG2	protein kinase cGMP-dependent 2	protein coding gene	no	ENST00000545647.5;ENST00000264399.5;ENST00000395578.3;ENST00000628926.1;ENST00000509169.5;ENST00000509474.5	4.557	2.175	2.148	0.307(2946)	0.567(398)	0.561(9750)	non tumor-specific	nAS	yes
STON1-GTF2A1L_LS004	chr2:48591855|48620851:+	STON1-GTF2A1L	STON1-GTF2A1L readthrough	protein coding gene	no	ENST00000405008.5;ENST00000402114.6;ENST00000394754.5;ENST00000394751.5	0.947	0.757	1.577	0.131(1259)	0.261(183)	0.429(7459)	non tumor-specific	nAS	yes
FDCSP_LS002	chr4:70231251|70232994:+	FDCSP	follicular dendritic cell secreted protein	protein coding gene	no	ENST00000317987.5	20.913	18.944	1.468	0.452(4329)	0.474(333)	0.328(5702)	non tumor-specific	nAS	yes
AC008543.1_LS006	chr19:11652053|11678320:+	AC008543.1	-	lncRNA gene	no	ENST00000344893.4	0.430	0.001	0.628	0.002(16)	0.001(1)	0.02(348)	non tumor-specific	nAS	yes
UN_ARRDC2_LS0017	chr19:18007842|18008229:+	ARRDC2	arrestin domain containing 2	protein coding gene	no	.	1.415	0.319	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_FITM2_LS0003	chr20:44305537|44305845:-	FITM2	fat storage inducing transmembrane protein 2	protein coding gene	no	.	7.007	1.046	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRIA1_LS014	chr5:153650514|153655819:+	GRIA1	glutamate ionotropic receptor AMPA type subunit 1	protein coding gene	no	ENST00000481559.6;ENST00000285900.9;ENST00000518142.5;ENST00000340592.9;ENST00000521843.6;ENST00000448073.8;ENST00000518783.1;ENST00000520966.1	8.994	6.305	2.460	0.095(910)	0.195(137)	0.496(8630)	non tumor-specific	nAS	yes
UN_RF00019_UP_LS0664	chr16:173264|176802:+	RF00019	-	small non-coding RNA gene	no	.	82.042	5.738	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPM4_LS010	chr19:16080442|16081913:+	TPM4	tropomyosin 4	protein coding gene	no	ENST00000590180.2	0.415	0.211	1.531	0.584(5592)	0.452(317)	0.66(11473)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_RPS16_LS0003	chr19:39433253|39433283:+	RPS16	ribosomal protein S16	protein coding gene	no	.	20.167	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
KRT16_LS006	chr17:41611230|41611345:-	KRT16	keratin 16	protein coding gene	no	ENST00000301653.8;ENST00000593067.1	444.886	121.233	2.640	0.528(5062)	0.433(304)	0.652(11329)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SVOPL_LS010	chr7:138628363|138630049:-	SVOPL	SVOP like	protein coding gene	no	ENST00000288513.9;ENST00000441685.5;ENST00000421622.5;ENST00000436657.5;ENST00000419765.3	2.728	1.627	1.259	0.206(1969)	0.375(263)	0.233(4047)	non tumor-specific	nAS	yes
UN_AC068633.1_LS0016	chr3:118525622|118529517:-	AC068633.1	-	lncRNA gene	no	.	4.436	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
STAT2_LS002	chr12:56344135|56346146:-	STAT2	signal transducer and activator of transcription 2	protein coding gene	no	ENST00000556539.5;ENST00000314128.8;ENST00000557235.5;ENST00000555488.1	60.469	26.721	86.092	0.993(9516)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
PTPRC_LS003	chr1:198639137|198639226:+	PTPRC	protein tyrosine phosphatase receptor type C	protein coding gene	yes	ENST00000348564.11;ENST00000442510.7;ENST00000530727.5;ENST00000645247.1;ENST00000462363.6;ENST00000367367.8;ENST00000367364.5;ENST00000413409.6;ENST00000529828.5	6.785	2.156	2.198	0.747(7159)	0.877(616)	0.675(11727)	non tumor-specific	alt_3prime	yes
CYP4F12_LS019	chr19:15682510|15683493:+	CYP4F12	cytochrome P450 family 4 subfamily F member 12	protein coding gene	no	ENST00000550308.5;ENST00000518629.7;ENST00000517734.5;ENST00000324632.10;ENST00000550627.5	7.087	12.833	12.272	0.495(4744)	0.816(573)	0.877(15237)	non tumor-specific	alt_5prime	yes
POTEJ_LS011	chr2:130644053|130645737:+	POTEJ	POTE ankyrin domain family member J	protein coding gene	no	ENST00000409602.1	4.871	0.143	0.791	0.034(330)	0.023(16)	0.001(14)	non tumor-specific	nAS	yes
ACVRL1_LS006	chr12:51913350|51914439:+	ACVRL1	activin A receptor like type 1	protein coding gene	no	ENST00000547400.5	0.359	0.229	1.946	0.752(7208)	0.838(588)	0.68(11817)	non tumor-specific	exon_skip	yes
REV1_LS014	chr2:99412951|99418828:-	REV1	REV1 DNA directed polymerase	protein coding gene	no	ENST00000393445.7;ENST00000258428.7;ENST00000413697.5;ENST00000465835.5	12.734	12.062	23.303	0.925(8860)	0.974(684)	0.975(16944)	non tumor-specific	exon_skip	yes
WDR78_LS030	chr1:66905375|66924662:-	WDR78	dynein axonemal intermediate chain 4	protein coding gene	no	ENST00000371026.7;ENST00000371023.7;ENST00000371022.3	2.917	2.976	1.906	0.679(6509)	0.811(569)	0.738(12820)	non tumor-specific	exon_skip	yes
LINC00870_LS001	chr3:72151418|72159361:+	LINC00870	long intergenic non-protein coding RNA 870	lncRNA gene	no	ENST00000473713.5	0.502	0.338	1.031	0.056(533)	0.132(93)	0.023(396)	non tumor-specific	nAS	yes
GRIK1_LS018	chr21:29654863|29672983:-	GRIK1	glutamate ionotropic receptor kainate type subunit 1	protein coding gene	no	ENST00000327783.8;ENST00000389125.7;ENST00000399913.5;ENST00000399914.5;ENST00000389124.6;ENST00000399907.5;ENST00000399909.5;ENST00000472429.1	6.594	1.524	2.005	0.086(823)	0.103(72)	0.274(4768)	non tumor-specific	nAS	yes
PHF3_LS004	chr6:63636150|63684129:+	PHF3	PHD finger protein 3	protein coding gene	no	ENST00000506783.5	0.097	0.124	0.766	0.509(4878)	0.65(456)	0.336(5836)	non tumor-specific	exon_skip	yes
UN_GATC_LS0002	chr12:120446561|120446662:+	GATC	glutamyl-tRNA amidotransferase subunit C	protein coding gene	no	.	8.048	3.926	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC019103.1_UP_LS0002	chr4:1009392|1010924:+	AC019103.1	-	lncRNA gene	no	.	3.160	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SLC25A13_LS023	chr7:96296951|96321942:-	SLC25A13	solute carrier family 25 member 13	protein coding gene	no	ENST00000265631.9;ENST00000416240.6;ENST00000472162.2	15.073	10.348	7.480	0.944(9048)	0.97(681)	0.965(16775)	non tumor-specific	exon_skip	yes
SNHG14_LS105	chr15:25208027|25211607:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000424333.5	0.838	0.178	2.395	0.002(16)	0.001(1)	0.137(2383)	non tumor-specific	nAS	yes
UN_ARSFP1_UP_LS0005	chrY:12420454|12420893:-	ARSFP1	arylsulfatase F pseudogene 1	pseudogene	no	.	2.008	0.092	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
DNAJC6_LS021	chr1:65406133|65408641:+	DNAJC6	DnaJ heat shock protein family (Hsp40) member C6	protein coding gene	no	ENST00000263441.11;ENST00000395325.7;ENST00000371069.4	11.292	24.616	3.533	0.56(5363)	0.644(452)	0.866(15059)	non tumor-specific	alt_3prime	yes
ADAM28_LS018	chr8:24331327|24332660:+	ADAM28	ADAM metallopeptidase domain 28	protein coding gene	yes	ENST00000265769.8;ENST00000520448.5;ENST00000437154.6;ENST00000518516.5;ENST00000521110.1;ENST00000521629.5	7.817	6.024	2.238	0.68(6511)	0.722(507)	0.712(12373)	non tumor-specific	nAS	yes
MAL2-AS1_LS003	chr8:119215627|119246730:-	MAL2-AS1	MAL2 antisense RNA 1	lncRNA gene	no	ENST00000524129.5	0.030	0.003	0.711	0.006(53)	0.004(3)	0.001(15)	non tumor-specific	nAS	yes
UN_UNC13B_LS0023	chr9:35188041|35194717:-	UNC13B	unc-13 homolog B	protein coding gene	no	.	2.594	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AP000552.1_LS013	chr22:21322984|21324831:-	AP000552.1	family with sequence similarity 230 member H	lncRNA gene	no	ENST00000453273.5	0.166	0.000	0.751	0(3)	0(0)	0.001(18)	non tumor-specific	nAS	yes
TTC38_LS020	chr22:46288588|46289402:+	TTC38	tetratricopeptide repeat domain 38	protein coding gene	no	ENST00000381031.7;ENST00000451998.1	46.414	53.109	29.409	0.991(9492)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_FKBP10_LS0054	chr17:41820840|41820947:+	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	13.413	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
NCKAP5_LS027	chr2:133559117|133568216:-	NCKAP5	NCK associated protein 5	protein coding gene	no	ENST00000409261.5;ENST00000317721.10;ENST00000405974.7;ENST00000409213.5	1.588	1.157	1.011	0.192(1841)	0.349(245)	0.345(5994)	non tumor-specific	exon_skip	yes
UN_AC022031.1_UP_LS0009	chr18:55791898|55792709:+	AC022031.1	-	lncRNA gene	no	.	2.580	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
AL445524.1_LS003	chr1:231524547|231527338:-	AL445524.1	-	lncRNA gene	no	ENST00000454631.1	0.701	0.629	1.354	0.813(7788)	0.714(501)	0.592(10291)	non tumor-specific	nAS	yes
MIR646HG_LS003	chr20:60088000|60100171:+	MIR646HG	MIR646 host gene	lncRNA gene	no	ENST00000428772.5	0.292	0.087	0.648	0.015(145)	0.006(4)	0.014(252)	non tumor-specific	nAS	yes
UN_ITGA4_LS0005	chr2:181482414|181482514:+	ITGA4	integrin subunit alpha 4	protein coding gene	no	.	1.963	0.078	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_CIC_LS0115	chr19:42293073|42293106:-	CIC	capicua transcriptional repressor	protein coding gene	yes	.	2.898	0.647	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SEC14L1_LS383	chr17:77216075|77216414:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	5.389	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ANKRD54_LS007	chr22:37833082|37833159:-	ANKRD54	ankyrin repeat domain 54	protein coding gene	no	ENST00000215941.8;ENST00000406423.5;ENST00000411961.6;ENST00000407117.6;ENST00000464849.5;ENST00000424350.5	35.566	24.980	23.078	0.992(9501)	0.997(700)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTC23_LS006	chr15:99139399|99139696:-	TTC23	tetratricopeptide repeat domain 23	protein coding gene	no	.;.;.	0.850	0.125	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_TMEM181_LS0002	chr6:158536865|158552226:+	TMEM181	transmembrane protein 181	protein coding gene	no	.	2.060	0.209	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CALR_LS0016	chr19:12940153|12940259:-	CALR	calreticulin	protein coding gene	no	.	6.209	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TUT1_LS004	chr11:62577291|62578561:-	TUT1	terminal uridylyl transferase 1, U6 snRNA-specific	protein coding gene	no	ENST00000308436.11;ENST00000476907.5	26.265	13.925	29.473	0.98(9386)	0.99(695)	0.979(17017)	non tumor-specific	intron_retention	yes
XPO4_LS023	chr13:20862858|20868596:-	XPO4	exportin 4	protein coding gene	no	ENST00000255305.10;ENST00000400602.2	4.734	2.963	2.319	0.729(6986)	0.852(598)	0.823(14309)	non tumor-specific	exon_skip	yes
DNAJC7_LS027	chr17:42000570|42011051:-	DNAJC7	DnaJ heat shock protein family (Hsp40) member C7	protein coding gene	no	ENST00000590886.5	0.082	0.035	0.640	0.839(8039)	0.868(609)	0.002(31)	non tumor-specific	nAS	yes
NTRK3_LS037	chr15:88184299|88255906:-	NTRK3	neurotrophic receptor tyrosine kinase 3	protein coding gene	yes	ENST00000394480.6;ENST00000629765.2;ENST00000355254.6;ENST00000360948.6;ENST00000357724.6;ENST00000626019.2;ENST00000557856.5;ENST00000558676.5;ENST00000317501.7;ENST00000540489.6	3.786	2.442	9.452	0.264(2529)	0.604(424)	0.862(14979)	non tumor-specific	nAS	yes
UN_FAAH2_LS0032	chrX:57452311|57488757:+	FAAH2	fatty acid amide hydrolase 2	protein coding gene	no	.	3.099	0.666	0.000	0.015(146)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_ATP6AP1L_LS0001	chr5:82279724|82280947:+	ATP6AP1L	ATPase H+ transporting accessory protein 1 like	protein coding gene	no	.	0.707	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BAIAP2-DT_LS0017	chr17:81032324|81032768:+	BAIAP2-DT	BAIAP2 divergent transcript	lncRNA gene	no	.	2.652	0.106	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	nAS	no
CC2D2A_LS022	chr4:15538137|15540837:+	CC2D2A	coiled-coil and C2 domain containing 2A	protein coding gene	no	ENST00000424120.5;ENST00000513811.5;ENST00000503292.5;ENST00000634028.1;ENST00000389652.9;ENST00000506643.4	5.424	5.851	4.868	0.683(6540)	0.846(594)	0.867(15063)	non tumor-specific	nAS	yes
UN_USP2-AS1_LS0036	chr11:119478153|119479137:-	USP2-AS1	USP2 antisense RNA 1 (head to head)	lncRNA gene	no	.	13.871	0.541	0.000	0.011(108)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC093732.2_UP_LS0002	chr2:47035625|47108388:-	AC093732.2	-	lncRNA gene	no	.	2.836	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
WDR59_LS008	chr16:74892565|74893679:-	WDR59	WD repeat domain 59	protein coding gene	no	ENST00000262144.10;ENST00000563797.5;ENST00000567018.5;ENST00000569788.5;ENST00000563381.5;ENST00000569229.5;ENST00000566924.1	22.171	14.406	46.427	0.992(9505)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
KIAA0319_LS021	chr6:24588785|24595873:-	KIAA0319	KIAA0319	protein coding gene	no	ENST00000430948.6;ENST00000537886.5;ENST00000535378.5;ENST00000378214.7;ENST00000543707.2	3.684	2.176	2.036	0.14(1341)	0.06(42)	0.341(5933)	non tumor-specific	nAS	yes
ANKRD36C_LS072	chr2:95938901|95938987:-	ANKRD36C	ankyrin repeat domain 36C	protein coding gene	no	ENST00000456556.5	3.351	0.355	1.464	0.077(738)	0.051(36)	0.663(11532)	non tumor-specific	exon_skip;intron_retention	yes
UN_ST6GALNAC3_LS0002	chr1:76074884|76152228:+	ST6GALNAC3	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein coding gene	no	.	1.774	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_VNN3_LS0002	chr6:132728933|132731375:-	VNN3	vanin 3	protein coding gene	no	.	1.546	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ALOX12B_LS002	chr17:8073318|8073657:-	ALOX12B	arachidonate 12-lipoxygenase, 12R type	protein coding gene	no	ENST00000319144.4;ENST00000647874.1;ENST00000649809.1;ENST00000650441.1	8.011	11.227	2.254	0.174(1671)	0.073(51)	0.397(6900)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SCARB1_LS0037	chr12:124778464|124778502:+	SCARB1	scavenger receptor class B member 1	protein coding gene	no	.	7.062	0.715	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERI1_LS012	chr8:9020464|9029792:+	ERI1	exoribonuclease 1	protein coding gene	no	ENST00000523898.5;ENST00000250263.7;ENST00000519292.5	15.828	6.817	7.750	0.967(9263)	0.983(690)	0.973(16905)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FLNA_LS0060	chrX:154348802|154349716:+	FLNA	filamin A	protein coding gene	yes	.	6.389	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF107_UP_LS0005	chr7:64599782|64600259:+	ZNF107	zinc finger protein 107	protein coding gene	no	.	1.614	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
C11orf80_LS004	chr11:66744919|66752638:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	.;.	1.021	0.074	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_REM1_LS0006	chr20:31482488|31482725:+	REM1	RRAD and GEM like GTPase 1	protein coding gene	no	.	2.092	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
SCP2_LS016	chr1:52980543|52988029:+	SCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000371514.7;ENST00000478631.6;ENST00000528311.5;ENST00000371509.8;ENST00000407246.6;ENST00000371513.9;ENST00000640998.1;ENST00000473584.1	57.653	83.128	56.075	0.969(9285)	0.991(696)	0.979(17015)	non tumor-specific	exon_skip	yes
CNOT8_LS023	chr5:154858801|154865192:+	CNOT8	CCR4-NOT transcription complex subunit 8	protein coding gene	no	ENST00000519903.5;ENST00000519903.5	0.020	0.022	0.665	0.055(531)	0.041(29)	0.172(2998)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AC234582.2_UP_LS0032	chr1:155215787|155237341:-	AC234582.2	-	lncRNA gene	no	.	0.867	0.036	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
PPHLN1_LS001	chr12:42238661|42335883:+	PPHLN1	periphilin 1	protein coding gene	no	ENST00000549190.5	0.008	0.013	0.776	0.481(4606)	0.467(328)	0.046(793)	non tumor-specific	alt_5prime	yes
UN_PGAM5_LS0011	chr12:132717798|132717990:+	PGAM5	PGAM family member 5, mitochondrial serine/threonine protein phosphatase	protein coding gene	no	.	23.780	8.615	0.000	0.813(7791)	0.641(450)	0(0)	non tumor-specific	nAS	no
UN_WDR36_LS0005	chr5:111096166|111097079:+	WDR36	WD repeat domain 36	protein coding gene	no	.	1.914	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCNX1_LS0029	chr14:71013202|71018994:+	PCNX1	pecanex 1	protein coding gene	no	.	0.521	0.096	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PNCK_LS049	chrX:153686683|153687431:-	PNCK	pregnancy up-regulated nonubiquitous CaM kinase	protein coding gene	no	ENST00000423545.1;ENST00000423545.1	0.347	0.090	0.822	0.15(1435)	0.038(27)	0.074(1292)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_NPTX1_LS0006	chr17:80470720|80471732:-	NPTX1	neuronal pentraxin 1	protein coding gene	no	.	10.213	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01565_LS001	chr3:128574303|128575266:-	LINC01565	long intergenic non-protein coding RNA 1565	lncRNA gene	no	ENST00000356020.2	0.447	0.000	0.660	0.001(7)	0(0)	0.003(57)	non tumor-specific	nAS	yes
PACRG_LS015	chr6:163312895|163314827:+	PACRG	parkin coregulated	protein coding gene	yes	ENST00000337019.7;ENST00000611387.1	0.533	0.341	1.187	0.401(3845)	0.652(458)	0.326(5664)	non tumor-specific	exon_skip;mutex_exons	yes
RARB_LS001	chr3:25174575|25461193:+	RARB	retinoic acid receptor beta	protein coding gene	yes	ENST00000383772.8	0.619	0.356	1.395	0.303(2899)	0.376(264)	0.216(3755)	non tumor-specific	nAS	yes
UN_LRMDA_LS0072	chr10:76444716|76535798:+	LRMDA	leucine rich melanocyte differentiation associated	protein coding gene	no	.	1.021	0.169	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DHX30_LS008	chr3:47818117|47827347:+	DHX30	DExH-box helicase 30	protein coding gene	no	ENST00000445061.5;ENST00000348968.8;ENST00000446256.6	10.498	9.203	13.054	0.961(9205)	0.981(689)	0.975(16942)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HCG23_LS0018	chr6:32369983|32385280:-	HCG23	HLA complex group 23	lncRNA gene	no	.	1.795	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SGK3_LS0046	chr8:66775319|66790723:+	SGK3	serum/glucocorticoid regulated kinase family member 3	protein coding gene	no	.	0.690	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LARP7P4_UP_LS0041	chr3:145373754|145375428:+	LARP7P4	LARP7 pseudogene 4	pseudogene	no	.	7.801	0.677	0.000	0.03(292)	0.001(1)	0(0)	non tumor-specific	nAS	no
DGKI_LS037	chr7:137619940|137623483:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000453654.6;ENST00000288490.9;ENST00000446122.5;ENST00000424189.6;ENST00000614521.1	4.804	0.513	1.291	0.089(850)	0.094(66)	0.284(4935)	non tumor-specific	nAS	yes
UN_FASN_LS0147	chr17:82083115|82083340:-	FASN	fatty acid synthase	protein coding gene	yes	.	64.610	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TRRAP_LS074	chr7:98990619|98992137:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	ENST00000359863.8;ENST00000355540.7;ENST00000628380.2;ENST00000446306.7;ENST00000456197.1;ENST00000360902.2	49.758	23.409	23.980	0.972(9313)	0.973(683)	0.978(17001)	non tumor-specific	exon_skip	yes
UN_ZNF295-AS1_LS0003	chr21:42022211|42024275:+	ZNF295-AS1	ZNF295 antisense RNA 1	lncRNA gene	no	.	4.519	1.368	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	nAS	no
PITRM1_LS027	chr10:3157064|3157435:-	PITRM1	pitrilysin metallopeptidase 1	protein coding gene	no	ENST00000224949.8;ENST00000380989.6;ENST00000451104.6;ENST00000430362.1	56.244	38.927	48.794	0.992(9503)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CCDC85C_LS008	chr14:99522240|99536015:-	CCDC85C	coiled-coil domain containing 85C	protein coding gene	no	ENST00000380243.8;ENST00000557576.5;ENST00000554996.5;ENST00000554877.1;ENST00000556348.1	24.943	19.625	10.059	0.952(9124)	0.987(693)	0.924(16054)	non tumor-specific	alt_3prime;exon_skip	yes
TSTA3_LS012	chr8:143616723|143617037:-	TSTA3	GDP-L-fucose synthase	protein coding gene	no	ENST00000533817.5	0.028	0.134	0.762	0.685(6565)	0.527(370)	0.213(3703)	non tumor-specific	intron_retention	yes
ETNK1_LS012	chr12:22673660|22684483:+	ETNK1	ethanolamine kinase 1	protein coding gene	no	ENST00000266517.8;ENST00000544191.1	20.427	14.654	18.302	0.993(9511)	0.997(700)	0.977(16982)	non tumor-specific	exon_skip	yes
UN_NOL4_UP_LS0018	chr18:34329090|34331459:-	NOL4	nucleolar protein 4	protein coding gene	no	.	1.460	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	nAS	no
GRIPAP1_LS014	chrX:48983092|48983228:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	ENST00000619149.4;ENST00000593475.5;ENST00000622599.4;ENST00000376423.8;ENST00000619107.1;ENST00000473581.5;ENST00000611757.4;ENST00000619149.4;ENST00000593475.5;ENST00000622599.4;ENST00000376423.8;ENST00000619107.1;ENST00000473581.5;ENST00000611757.4	59.322	33.875	60.717	0.995(9531)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_GPR160_UP_LS0001	chr3:169504150|169982876:+	GPR160	G protein-coupled receptor 160	protein coding gene	no	.	20.601	4.079	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HIVEP2_UP_LS0001	chr6:143021953|143048342:-	HIVEP2	HIVEP zinc finger 2	protein coding gene	no	.	2.053	0.642	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	nAS	no
RYR3_LS031	chr15:33647460|33649072:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000636583.1	3.437	1.222	1.433	0.022(214)	0.053(37)	0.442(7680)	non tumor-specific	alt_3prime	yes
UN_SMOC1_LS0053	chr14:69921561|69922966:+	SMOC1	SPARC related modular calcium binding 1	protein coding gene	no	.	3.392	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
AP003080.1_LS002	chr11:101585788|101593680:+	AP003080.1	-	pseudogene	no	ENST00000527374.1	0.192	0.059	0.677	0.007(71)	0.028(20)	0.035(613)	non tumor-specific	nAS	yes
AL354710.2_LS001	chr9:125242063|125254578:+	AL354710.2	-	lncRNA gene	no	ENST00000468244.1	0.264	0.070	0.659	0.017(166)	0.013(9)	0.021(360)	non tumor-specific	nAS	yes
VAMP8_LS008	chr2:85579874|85581576:+	VAMP8	vesicle associated membrane protein 8	protein coding gene	no	ENST00000409760.1	0.420	7.051	1.824	0.801(7676)	0.919(645)	0.588(10221)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
KAT14_LS011	chr20:18162945|18181710:+	KAT14	lysine acetyltransferase 14	protein coding gene	no	ENST00000435364.7;ENST00000377681.7;ENST00000489634.2	37.413	23.687	20.433	0.991(9490)	0.996(699)	0.975(16950)	non tumor-specific	exon_skip	yes
UN_RF00019_UP_LS0914	chr16:18340763|18380874:+	RF00019	-	small non-coding RNA gene	no	.	3.373	1.598	0.000	0.022(214)	0.004(3)	0(0)	non tumor-specific	nAS	no
FBLN7_LS013	chr2:112185339|112187134:+	FBLN7	fibulin 7	protein coding gene	no	ENST00000331203.6;ENST00000409667.7;ENST00000409450.7;ENST00000441565.5;ENST00000272559.4	12.202	8.386	6.402	0.786(7528)	0.868(609)	0.905(15737)	non tumor-specific	alt_3prime	yes
CATSPER1_LS003	chr11:66017174|66018827:-	CATSPER1	cation channel sperm associated 1	protein coding gene	no	ENST00000312106.5	4.768	0.763	1.024	0.138(1323)	0.091(64)	0.357(6206)	non tumor-specific	alt_3prime;alt_5prime	yes
FAM19A2_LS002	chr12:61710417|61753622:-	FAM19A2	TAFA chemokine like family member 2	protein coding gene	no	ENST00000416284.7;ENST00000551619.5;ENST00000550003.1	1.986	4.106	1.391	0.22(2110)	0.313(220)	0.553(9619)	non tumor-specific	exon_skip	yes
UN_NFKBIA_LS0023	chr14:35402626|35402771:-	NFKBIA	NFKB inhibitor alpha	protein coding gene	no	.	108.963	30.001	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
CIC_LS001	chr19:42268594|42271774:+	CIC	capicua transcriptional repressor	protein coding gene	yes	ENST00000572681.6	0.811	0.589	1.257	0.706(6765)	0.792(556)	0.64(11131)	non tumor-specific	nAS	yes
UN_RNA5SP389_UP_LS0429	chr14:106631409|106652438:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	5.531	1.896	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
PRR11_LS010	chr17:59185562|59193492:+	PRR11	proline rich 11	protein coding gene	no	ENST00000262293.8;ENST00000578777.5;ENST00000578542.5;ENST00000614081.1;ENST00000580177.5	19.518	2.936	1.300	0.796(7628)	0.593(416)	0.571(9921)	non tumor-specific	alt_5prime;exon_skip	yes
ANKFN1_LS018	chr17:56254220|56257936:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000573365.2	2.938	0.251	0.849	0.01(96)	0.006(4)	0.058(1012)	non tumor-specific	exon_skip	yes
UN_GPD1L_LS0023	chr3:32154874|32158876:+	GPD1L	glycerol-3-phosphate dehydrogenase 1 like	protein coding gene	no	.	1.554	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_KHNYN_LS0012	chr14:24433031|24436056:+	KHNYN	KH and NYN domain containing	protein coding gene	no	.	11.027	1.645	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCNE3_LS003	chr11:74462103|74464143:-	KCNE3	potassium voltage-gated channel subfamily E regulatory subunit 3	protein coding gene	no	.;.	2.870	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_STK32A-AS1_LS0003	chr5:147180744|147183429:-	STK32A-AS1	STK32A antisense RNA 1	lncRNA gene	no	.	4.169	0.144	0.000	0.046(440)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL357079.1_LS002	chr1:43944796|43946244:-	AL357079.1	-	lncRNA gene	no	ENST00000446167.1;ENST00000445226.1	1.124	0.601	1.616	0.703(6736)	0.67(470)	0.746(12973)	non tumor-specific	nAS	yes
GYPA_LS006	chr4:144118752|144119686:-	GYPA	glycophorin A (MNS blood group)	protein coding gene	no	ENST00000616983.4;ENST00000641688.2;ENST00000360771.8;ENST00000642295.1;ENST00000324022.14;ENST00000646447.1;ENST00000535709.6;ENST00000508337.1;ENST00000642713.1;ENST00000642738.1	7.682	1.282	1.190	0.021(201)	0.061(43)	0.139(2417)	non tumor-specific	exon_skip	yes
GJA1_LS004	chr6:121437725|121446832:+	GJA1	gap junction protein alpha 1	protein coding gene	yes	ENST00000647564.1	1.252	0.597	0.000	0.04(380)	0.075(53)	0(0)	non tumor-specific	nAS	yes
UN_PTPN13_LS0002	chr4:86594789|86672365:+	PTPN13	protein tyrosine phosphatase non-receptor type 13	protein coding gene	yes	.	1.369	0.341	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_COL5A3_LS0039	chr19:9995617|9996206:-	COL5A3	collagen type V alpha 3 chain	protein coding gene	no	.	1.076	0.013	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LAMA5_LS026	chr20:62313460|62313649:-	LAMA5	laminin subunit alpha 5	protein coding gene	no	ENST00000370691.6;ENST00000252999.7	96.366	47.482	119.730	0.948(9087)	0.983(690)	0.97(16852)	non tumor-specific	alt_5prime	yes
MYO18A_LS026	chr17:29097899|29098105:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000527372.6;ENST00000533112.5;ENST00000531253.5;ENST00000628822.2;ENST00000530254.6	30.958	22.737	53.530	0.839(8039)	0.944(663)	0.979(17019)	non tumor-specific	alt_5prime	yes
OAZ1_LS002	chr19:2269744|2271391:+	OAZ1	ornithine decarboxylase antizyme 1	protein coding gene	no	ENST00000582888.8	13.259	4.601	9.811	0.046(444)	0.095(67)	0.978(16995)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
COLGALT2_LS003	chr1:183940787|183944196:-	COLGALT2	collagen beta(1-O)galactosyltransferase 2	protein coding gene	no	ENST00000649786.1;ENST00000367521.5;ENST00000361927.8;ENST00000367520.3	8.572	3.774	3.790	0.512(4902)	0.718(504)	0.785(13647)	non tumor-specific	nAS	yes
UN_FUT9_LS0025	chr6:96200453|96202906:-	FUT9	fucosyltransferase 9	protein coding gene	no	.	2.495	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PINK1_LS0012	chr1:20644749|20645585:-	PINK1	PTEN induced kinase 1	protein coding gene	no	.	0.728	0.294	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	nAS	no
CFAP100_LS012	chr3:126414179|126416316:+	CFAP100	cilia and flagella associated protein 100	protein coding gene	no	ENST00000352312.5;ENST00000505024.1	2.698	1.862	1.448	0.049(466)	0.094(66)	0.13(2253)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_LYPLA2_LS0008	chr1:23792815|23793472:-	LYPLA2	lysophospholipase 2	protein coding gene	no	.	2.069	1.232	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	nAS	no
KIDINS220_LS028	chr2:8778727|8778896:-	KIDINS220	kinase D interacting substrate 220	protein coding gene	no	ENST00000569008.2;ENST00000496383.5;ENST00000256707.7;ENST00000473731.5;ENST00000488729.5;ENST00000489024.5;ENST00000319688.5	34.922	30.099	23.534	0.931(8917)	0.977(686)	0.978(16999)	non tumor-specific	alt_3prime	yes
DPP10_LS018	chr2:115499604|115525898:+	DPP10	dipeptidyl peptidase like 10	protein coding gene	no	ENST00000410059.5;ENST00000461250.5;ENST00000409163.5;ENST00000393146.6;ENST00000393147.6;ENST00000310323.12;ENST00000486885.5;ENST00000429914.5;ENST00000419287.1;ENST00000488208.1	4.452	2.485	2.923	0.207(1980)	0.179(126)	0.358(6228)	non tumor-specific	exon_skip	yes
UN_SEPT14P24_UP_LS0043	chr7:56367938|56370466:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	1.667	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
LIMCH1_LS008	chr4:41494606|41524409:+	LIMCH1	LIM and calponin homology domains 1	protein coding gene	no	ENST00000513024.5;ENST00000508501.5;ENST00000512946.5;ENST00000313860.11;ENST00000512228.5;ENST00000512632.5;ENST00000512820.5;ENST00000511424.5;ENST00000446625.6;ENST00000515847.1	9.771	17.141	10.815	0.778(7451)	0.932(654)	0.909(15793)	non tumor-specific	exon_skip	yes
DGKH_LS048	chr13:42252481|42256284:+	DGKH	diacylglycerol kinase eta	protein coding gene	no	ENST00000498255.6	1.786	0.219	0.632	0.003(31)	0.003(2)	0.013(221)	non tumor-specific	alt_3prime	yes
AC109466.1_LS002	chr5:164297196|164486674:+	AC109466.1	-	lncRNA gene	no	ENST00000522303.5	2.765	0.082	1.030	0.008(72)	0.003(2)	0.04(692)	non tumor-specific	nAS	yes
GOLGA8Q_LS010	chr15:30558051|30558247:+	GOLGA8Q	golgin A8 family member Q	protein coding gene	no	ENST00000562783.1	1.045	0.669	0.792	0.124(1187)	0.212(149)	0.087(1511)	non tumor-specific	nAS	yes
UN_RDH5_LS0003	chr12:55720517|55721689:+	RDH5	retinol dehydrogenase 5	protein coding gene	no	.	2.471	0.584	0.000	0.006(53)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_SNX24_LS0042	chr5:123008789|123011002:+	SNX24	sorting nexin 24	protein coding gene	no	.	4.140	0.726	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_GTF2I_LS0030	chr7:74711109|74716898:+	GTF2I	general transcription factor IIi	protein coding gene	no	.	10.231	6.015	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01717_LS002	chr1:208729277|208729818:+	LINC01717	long intergenic non-protein coding RNA 1717	lncRNA gene	no	ENST00000415754.1	0.446	0.000	0.692	0(1)	0(0)	0.006(109)	non tumor-specific	nAS	yes
CC2D2B_LS042	chr10:96012367|96012532:+	CC2D2B	coiled-coil and C2 domain containing 2B	protein coding gene	no	ENST00000646931.1;ENST00000636965.1;ENST00000424464.5	5.035	0.000	0.837	0.011(104)	0(0)	0.296(5145)	non tumor-specific	exon_skip;intron_retention	yes
ST6GALNAC2_LS016	chr17:76573299|76574365:-	ST6GALNAC2	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein coding gene	no	ENST00000588005.5	0.651	0.363	0.977	0.353(3386)	0.523(367)	0.333(5780)	non tumor-specific	alt_3prime;exon_skip	yes
ERCC8_LS031	chr5:60932148|60944932:-	ERCC8	ERCC excision repair 8, CSA ubiquitin ligase complex subunit	protein coding gene	no	ENST00000439176.5	0.052	0.044	0.680	0.14(1346)	0.161(113)	0.171(2971)	non tumor-specific	exon_skip	yes
UN_AC011478.1_UP_LS0007	chr19:30945012|30968297:-	AC011478.1	-	lncRNA gene	no	.	4.108	1.249	0.000	0.002(23)	0.009(6)	0(0)	non tumor-specific	nAS	no
GPR89B_LS006	chr1:147943544|147943997:+	GPR89B	G protein-coupled receptor 89B	protein coding gene	no	ENST00000314163.11;ENST00000478307.5;ENST00000468618.6	23.723	12.169	0.767	0.985(9441)	0.994(698)	0.336(5836)	non tumor-specific	alt_3prime	yes
UN_GRIA3_LS0070	chrX:123428139|123431363:+	GRIA3	glutamate ionotropic receptor AMPA type subunit 3	protein coding gene	no	.	2.449	0.147	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_POMZP3_UP_LS0007	chr7:76650882|76674830:-	POMZP3	POM121 and ZP3 fusion	protein coding gene	no	.	2.522	0.088	0.000	0.011(103)	0.003(2)	0(0)	non tumor-specific	nAS	no
OGA_LS028	chr10:101807901|101810184:-	OGA	O-GlcNAcase	protein coding gene	no	ENST00000361464.7;ENST00000439817.5;ENST00000357797.9;ENST00000370094.7;ENST00000429860.1	54.116	39.507	53.637	0.958(9178)	0.986(692)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
MARF1_LS029	chr16:15625173|15625372:-	MARF1	meiosis regulator and mRNA stability factor 1	protein coding gene	no	ENST00000396368.7;ENST00000548025.5;ENST00000551742.5;ENST00000552553.5	13.135	11.668	11.382	0.827(7922)	0.944(663)	0.971(16885)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AEN_LS0002	chr15:88621382|88626118:+	AEN	apoptosis enhancing nuclease	protein coding gene	no	.	0.815	0.089	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SAMD3_LS0017	chr6:130288395|130312978:-	SAMD3	sterile alpha motif domain containing 3	protein coding gene	no	.	3.176	0.191	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_QSOX1_LS0025	chr1:180166585|180175321:+	QSOX1	quiescin sulfhydryl oxidase 1	protein coding gene	no	.	3.664	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ANKRD49_LS018	chr11:94497964|94498071:+	ANKRD49	ankyrin repeat domain 49	protein coding gene	no	ENST00000544514.1;ENST00000538535.1	2.074	0.457	5.676	0.679(6507)	0.725(509)	0.895(15557)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AUH_LS0013	chr9:91298076|91306329:-	AUH	AU RNA binding methylglutaconyl-CoA hydratase	protein coding gene	no	.	1.999	0.089	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UQCC1_LS036	chr20:35394196|35409345:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	ENST00000374394.7	0.066	0.162	0.922	0.125(1198)	0.107(75)	0.453(7868)	non tumor-specific	exon_skip;mutex_exons	yes
UN_C2orf88_LS0069	chr2:190131734|190139508:-	C2orf88	chromosome 2 open reading frame 88	protein coding gene	no	.	4.727	0.146	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC020916.1_UP_LS0002	chr19:13879027|13922090:-	AC020916.1	-	lncRNA gene	no	.	3.022	0.723	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
OS9_LS018	chr12:57696373|57715760:+	OS9	OS9 endoplasmic reticulum lectin	protein coding gene	no	ENST00000552285.5;ENST00000315970.11;ENST00000552787.5;ENST00000439210.6;ENST00000389146.10;ENST00000257966.12;ENST00000550372.5;ENST00000553208.5;ENST00000389142.9;ENST00000549307.5	295.869	200.493	131.444	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
TMC5_LS037	chr16:19474874|19477440:+	TMC5	transmembrane channel like 5	protein coding gene	no	ENST00000572147.1;ENST00000572147.1;ENST00000572147.1	0.546	0.306	0.857	0.069(660)	0.064(45)	0.06(1042)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DNAH5_LS081	chr5:13923440|13928094:-	DNAH5	dynein axonemal heavy chain 5	protein coding gene	no	ENST00000265104.4;ENST00000508040.1	2.732	1.735	1.122	0.288(2761)	0.289(203)	0.356(6186)	non tumor-specific	alt_3prime	yes
UN_ZNF600_LS0057	chr19:52774701|52774980:-	ZNF600	zinc finger protein 600	protein coding gene	no	.	1.029	0.252	0.000	0.017(161)	0.02(14)	0(0)	non tumor-specific	intron_retention	no
UN_ZNF815P_LS0022	chr7:5847922|5848564:+	ZNF815P	zinc finger protein 815, pseudogene	pseudogene	no	.	1.680	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MXI1_LS0012	chr10:110227875|110228189:+	MXI1	MAX interactor 1, dimerization protein	protein coding gene	yes	.	2.622	0.065	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AC009271.1_LS0003	chr18:55917316|56023402:+	AC009271.1	-	lncRNA gene	no	.	2.539	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PIGG_LS055	chr4:537363|539153:+	PIGG	phosphatidylinositol glycan anchor biosynthesis class G	protein coding gene	no	ENST00000505800.1	0.110	0.075	0.851	0.748(7171)	0.705(495)	0.296(5150)	non tumor-specific	nAS	yes
MAK_LS003	chr6:10770230|10773034:-	MAK	male germ cell associated kinase	protein coding gene	no	ENST00000354489.6	2.718	0.318	0.710	0.013(124)	0.026(18)	0.02(346)	non tumor-specific	nAS	yes
ZNF706_LS002	chr8:101178387|101199990:-	ZNF706	zinc finger protein 706	protein coding gene	no	ENST00000520984.5	0.189	0.103	0.913	0.791(7578)	0.85(597)	0.44(7643)	non tumor-specific	exon_skip	yes
UN_RNU6-408P_UP_LS0008	chr18:28801259|28802359:+	RNU6-408P	RNA, U6 small nuclear 408, pseudogene	small non-coding RNA gene	no	.	8.076	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA0753_LS022	chr17:6623571|6624755:-	KIAA0753	KIAA0753	protein coding gene	no	ENST00000361413.7	3.772	2.240	1.866	0.764(7320)	0.862(605)	0.765(13295)	non tumor-specific	exon_skip;mutex_exons	yes
GTF3C1_LS026	chr16:27488415|27488554:-	GTF3C1	general transcription factor IIIC subunit 1	protein coding gene	no	ENST00000561623.5;ENST00000356183.8;ENST00000564664.5	71.908	44.328	32.839	0.93(8914)	0.983(690)	0.979(17015)	non tumor-specific	exon_skip	yes
CATSPERB_LS006	chr14:91608404|91610480:-	CATSPERB	cation channel sperm associated auxiliary subunit beta	protein coding gene	no	ENST00000557036.1;ENST00000256343.7	0.907	0.743	1.101	0.121(1164)	0.083(58)	0.309(5367)	non tumor-specific	exon_skip	yes
CYFIP1_LS031	chr15:22944659|22944862:-	CYFIP1	cytoplasmic FMR1 interacting protein 1	protein coding gene	no	ENST00000617928.4;ENST00000610365.4;ENST00000621036.4;ENST00000613006.4;ENST00000611832.4;ENST00000619037.1	53.609	43.352	38.941	0.968(9272)	0.99(695)	0.978(16994)	non tumor-specific	nAS	yes
TXLNA_LS006	chr1:32190249|32192311:+	TXLNA	taxilin alpha	protein coding gene	no	ENST00000373610.7;ENST00000373609.1	53.289	31.591	31.486	0.988(9464)	0.993(697)	0.978(16995)	non tumor-specific	nAS	yes
WDR7_LS026	chr18:56781656|56816031:+	WDR7	WD repeat domain 7	protein coding gene	no	ENST00000357574.7;ENST00000615645.4;ENST00000254442.7	11.175	10.159	7.097	0.768(7356)	0.944(663)	0.964(16763)	non tumor-specific	exon_skip	yes
MICALL2_LS014	chr7:1435147|1436742:-	MICALL2	MICAL like 2	protein coding gene	no	ENST00000472100.5;ENST00000467394.5;ENST00000470807.5;ENST00000479007.5;ENST00000413446.5;ENST00000297508.7	57.989	29.492	49.123	0.992(9508)	0.991(696)	0.976(16965)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SPINK8_UP_LS0013	chr3:48403415|48403788:-	SPINK8	serine peptidase inhibitor Kazal type 8 (putative)	protein coding gene	no	.	1.595	1.084	0.000	0.025(235)	0.017(12)	0(0)	non tumor-specific	nAS	no
PALD1_LS014	chr10:70539247|70539580:+	PALD1	phosphatase domain containing paladin 1	protein coding gene	no	ENST00000263563.6	13.834	7.536	9.318	0.91(8715)	0.932(654)	0.912(15850)	non tumor-specific	nAS	yes
NARS2_LS004	chr11:78443758|78465876:-	NARS2	asparaginyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000281038.9;ENST00000528850.5;ENST00000525345.5	42.260	23.737	18.710	0.994(9526)	0.997(700)	0.977(16974)	non tumor-specific	exon_skip;mutex_exons	yes
UN_HEPHL1_LS0019	chr11:94089029|94093501:+	HEPHL1	hephaestin like 1	protein coding gene	no	.	5.073	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGEF25_LS002	chr12:57610684|57612930:+	ARHGEF25	Rho guanine nucleotide exchange factor 25	protein coding gene	no	ENST00000333972.11	0.547	3.481	5.416	0.292(2797)	0.772(542)	0.835(14509)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SLC35D2_LS008	chr9:96343996|96345299:-	SLC35D2	solute carrier family 35 member D2	protein coding gene	no	ENST00000650065.1;ENST00000253270.12;ENST00000490599.2	62.318	51.448	28.082	0.993(9511)	0.996(699)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
TCL6_LS002	chr14:95651029|95652097:+	TCL6	T cell leukemia/lymphoma 6	lncRNA gene	yes	ENST00000460130.5	0.339	0.147	0.742	0.098(937)	0.179(126)	0.014(239)	non tumor-specific	nAS	yes
AC005357.2_LS001	chr19:27902694|27956202:+	AC005357.2	-	pseudogene	no	ENST00000586473.2	0.209	0.072	0.733	0.033(315)	0.028(20)	0.038(654)	non tumor-specific	nAS	yes
C15orf38-AP3S2_LS011	chr15:89903983|89908280:-	C15orf38-AP3S2	ARPIN-AP3S2 readthrough	protein coding gene	no	ENST00000398333.7;ENST00000558648.5	18.482	23.268	23.657	0.98(9391)	0.996(699)	0.967(16811)	non tumor-specific	nAS	yes
UN_FRG1JP_LS0031	chr9:63857268|63859129:-	FRG1JP	FSHD region gene 1 family member J, pseudogene	pseudogene	no	.	1.783	0.517	0.000	0.102(980)	0.103(72)	0(0)	non tumor-specific	nAS	no
BCR_LS012	chr22:23261540|23268408:+	BCR	BCR activator of RhoGEF and GTPase	protein coding gene	yes	ENST00000305877.12;ENST00000359540.7	70.511	47.507	37.490	0.989(9473)	0.996(699)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_DTX3_LS0024	chr12:57608912|57609102:-	DTX3	deltex E3 ubiquitin ligase 3	protein coding gene	no	.	1.573	0.582	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HNRNPA1P10_LS0010	chr19:11666264|11666379:-	HNRNPA1P10	heterogeneous nuclear ribonucleoprotein A1 pseudogene 10	pseudogene	no	.	43.081	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SENP6_LS011	chr6:75634811|75640687:+	SENP6	SUMO specific peptidase 6	protein coding gene	no	ENST00000483859.6	11.652	9.027	10.809	0.79(7572)	0.893(627)	0.968(16831)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UBE3D_LS001	chr6:82893042|82893964:-	UBE3D	ubiquitin protein ligase E3D	protein coding gene	no	ENST00000503942.1	0.278	0.210	0.791	0.243(2329)	0.296(208)	0.192(3336)	non tumor-specific	nAS	yes
UN_SYTL2_LS0018	chr11:85718843|85718994:-	SYTL2	synaptotagmin like 2	protein coding gene	no	.	1.705	0.452	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_CSK_LS0008	chr15:74782720|74784443:+	CSK	C-terminal Src kinase	protein coding gene	no	.	2.659	0.239	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
FOXL2NB_LS004	chr3:138949639|138950265:+	FOXL2NB	FOXL2 neighbor	protein coding gene	no	ENST00000470680.5;ENST00000383165.3	1.528	0.479	1.316	0.106(1018)	0.06(42)	0.111(1938)	non tumor-specific	alt_3prime;intron_retention	yes
MIIP_LS011	chr1:12030124|12031266:+	MIIP	migration and invasion inhibitory protein	protein coding gene	no	ENST00000235332.5;ENST00000466860.5;ENST00000498685.5;ENST00000460823.1	70.969	28.044	60.358	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_IGKV2-10_UP_LS0020	chr2:89027409|89085386:-	IGKV2-10	immunoglobulin kappa variable 2-10 (pseudogene)	no	no	.	1341.709	2.284	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MAP3K8_LS0001	chr10:30434378|30434637:+	MAP3K8	mitogen-activated protein kinase kinase kinase 8	protein coding gene	yes	.	1.497	0.355	0.000	0.04(383)	0.036(25)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AC103974.1_LS002	chr11:18707393|18740424:+	AC103974.1	-	lncRNA gene	no	ENST00000527285.1	0.406	0.154	0.829	0.104(996)	0.141(99)	0.242(4204)	non tumor-specific	nAS	yes
SHF_LS021	chr15:45178306|45198772:-	SHF	Src homology 2 domain containing F	protein coding gene	no	ENST00000290894.12	0.285	0.166	0.986	0.165(1578)	0.204(143)	0.519(9018)	non tumor-specific	exon_skip	yes
CENPS_LS001	chr1:10430568|10430876:+	CENPS	centromere protein S	protein coding gene	no	ENST00000602486.1	0.332	0.068	0.673	0.361(3458)	0.255(179)	0.102(1777)	non tumor-specific	nAS	yes
UN_SRP14-AS1_LS0005	chr15:40046069|40046862:+	SRP14-AS1	SRP14 antisense RNA1 (head to head)	lncRNA gene	no	.	2.827	0.307	0.000	0.005(47)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_CHP1_LS0040	chr15:41280788|41281137:+	CHP1	calcineurin like EF-hand protein 1	protein coding gene	no	.	53.942	20.285	0.000	0.007(71)	0.006(4)	0(0)	non tumor-specific	nAS	no
GLT8D2_LS018	chr12:104049492|104049895:-	GLT8D2	glycosyltransferase 8 domain containing 2	protein coding gene	no	ENST00000546851.1	1.565	0.003	0.918	0.004(36)	0.006(4)	0.333(5789)	non tumor-specific	exon_skip;mutex_exons	yes
UN_EIF5A_LS0169	chr17:7312280|7312338:-	EIF5A	eukaryotic translation initiation factor 5A	protein coding gene	no	.	3.408	0.509	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
CPNE8_LS019	chr12:38776301|38829379:-	CPNE8	copine 8	protein coding gene	no	ENST00000331366.9;ENST00000360449.3;ENST00000550863.1	11.070	8.469	6.840	0.742(7109)	0.946(664)	0.942(16380)	non tumor-specific	nAS	yes
UN_AC121758.1_UP_LS0003	chr12:56782962|56788778:+	AC121758.1	-	pseudogene	no	.	9.657	0.201	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_VPS13A_LS0057	chr9:77382087|77389995:+	VPS13A	vacuolar protein sorting 13 homolog A	protein coding gene	no	.	2.837	0.027	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FBXO41_LS0040	chr2:73269768|73273015:-	FBXO41	F-box protein 41	protein coding gene	no	.	0.395	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
HSH2D_LS004	chr19:16143774|16151447:+	HSH2D	hematopoietic SH2 domain containing	protein coding gene	no	ENST00000535834.1	0.060	0.059	0.683	0.089(855)	0.047(33)	0.022(389)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MYO16-AS1_UP_LS0047	chr13:109267840|109268936:-	MYO16-AS1	MYO16 antisense RNA 1	lncRNA gene	no	.	1.534	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SLC12A3_LS015	chr16:56879227|56879542:+	SLC12A3	solute carrier family 12 member 3	protein coding gene	no	ENST00000566786.5;ENST00000438926.6;ENST00000563236.5;ENST00000262502.5	14.155	59.067	0.820	0.02(196)	0.187(131)	0.046(798)	non tumor-specific	exon_skip	yes
RNF187_LS004	chr1:228489056|228493053:+	RNF187	ring finger protein 187	protein coding gene	no	ENST00000482739.2	7.650	3.974	0.670	0.198(1894)	0.147(103)	0.121(2096)	non tumor-specific	alt_5prime	yes
UN_DOCK6_LS0109	chr19:11251086|11252086:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	.	2.118	0.245	0.000	0.011(106)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_AC003005.1_LS0003	chr19:57491597|57494368:+	AC003005.1	-	protein coding gene	no	.	1.817	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SLC6A4_LS011	chr17:30217304|30218118:-	SLC6A4	solute carrier family 6 member 4	protein coding gene	no	ENST00000401766.6;ENST00000261707.7;ENST00000394821.2	5.625	6.547	1.106	0.08(770)	0.278(195)	0.287(4992)	non tumor-specific	nAS	yes
RPGRIP1L_LS012	chr16:53641116|53641285:-	RPGRIP1L	RPGRIP1 like	protein coding gene	no	ENST00000262135.9;ENST00000647211.1;ENST00000621565.4;ENST00000379925.7;ENST00000563746.5;ENST00000564374.5	5.499	2.356	4.503	0.649(6222)	0.627(440)	0.91(15823)	non tumor-specific	exon_skip	yes
ADGRG2_LS016	chrX:19014074|19019599:-	ADGRG2	adhesion G protein-coupled receptor G2	protein coding gene	no	ENST00000379873.6;ENST00000379876.5;ENST00000379878.7;ENST00000354791.7;ENST00000357991.7;ENST00000357544.7;ENST00000379869.7;ENST00000360279.8;ENST00000356606.8;ENST00000340581.3	3.521	1.560	1.427	0.214(2053)	0.322(226)	0.475(8249)	non tumor-specific	exon_skip	yes
ZNF546_LS002	chr19:39994991|39997861:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000597363.5	0.236	0.000	0.696	0(3)	0(0)	0.002(27)	non tumor-specific	nAS	yes
UN_UTP14A_LS0014	chrX:129925195|129925923:+	UTP14A	UTP14A small subunit processome component	protein coding gene	no	.	6.871	0.439	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CFHR5_LS001	chr1:196977722|196982885:+	CFHR5	complement factor H related 5	protein coding gene	no	ENST00000256785.4	17.119	4.569	7.187	0.017(161)	0.033(23)	0.015(264)	non tumor-specific	alt_3prime	yes
UN_RMC1_LS0001	chr18:23503716|23504371:+	RMC1	regulator of MON1-CCZ1	protein coding gene	no	.	1.153	0.037	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_FP671120.1_LS0132	chr21:8214056|8217319:-	FP671120.1	-	lncRNA gene	no	.	324.824	7.680	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZSCAN18_LS0006	chr19:58090386|58092716:-	ZSCAN18	zinc finger and SCAN domain containing 18	protein coding gene	no	.	3.022	0.685	0.000	0.011(101)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0779	chr21:8260162|8260263:+	FP236383.1	-	lncRNA gene	no	.	412.568	5.136	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
TBC1D8B_LS004	chrX:106822202|106823226:+	TBC1D8B	TBC1 domain family member 8B	protein coding gene	no	ENST00000357242.9;ENST00000310452.6;ENST00000481617.6;ENST00000276175.7	4.822	4.138	1.982	0.685(6561)	0.883(620)	0.72(12508)	non tumor-specific	alt_5prime	yes
UN_AC010460.1_UP_LS0028	chr5:23823369|23924693:-	AC010460.1	-	pseudogene	no	.	4.565	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL157777.1_UP_LS0009	chr6:86724485|86724813:+	AL157777.1	-	pseudogene	no	.	2.664	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IPO13_LS0034	chr1:43967789|43967852:-	IPO13	importin 13	protein coding gene	no	.	2.694	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
IDH3G_LS019	chrX:153790292|153791191:-	IDH3G	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma	protein coding gene	no	ENST00000461215.2	0.186	0.032	0.633	0.008(76)	0.006(4)	0.034(583)	non tumor-specific	exon_skip;mutex_exons	yes
CAMK2D_LS012	chr4:113500511|113502936:-	CAMK2D	calcium/calmodulin dependent protein kinase II delta	protein coding gene	no	ENST00000511664.5;ENST00000394522.7;ENST00000505990.5	0.027	5.743	5.272	0.579(5545)	0.755(530)	0.676(11750)	non tumor-specific	exon_skip	yes
UN_GOLGA5_LS0001	chr14:92794993|92797408:+	GOLGA5	golgin A5	protein coding gene	no	.	3.529	0.000	0.000	0.005(47)	0(0)	0(0)	non tumor-specific	nAS	no
EVA1C_LS008	chr21:32413013|32457600:+	EVA1C	eva-1 homolog C	protein coding gene	no	.;.	0.720	0.884	0.000	0.001(5)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SUMF1_LS0100	chr3:4360343|4361147:-	SUMF1	sulfatase modifying factor 1	protein coding gene	no	.	3.789	6.974	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
FIBCD1_LS002	chr9:130904323|130905234:-	FIBCD1	fibrinogen C domain containing 1	protein coding gene	no	ENST00000448616.5;ENST00000372338.8;ENST00000372337.6	5.879	5.365	1.514	0.353(3381)	0.185(130)	0.295(5122)	non tumor-specific	nAS	yes
UN_SEPT14P24_UP_LS0019	chr7:56367663|56367792:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	2.679	0.098	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
EPHA8_LS016	chr1:22601473|22601627:+	EPHA8	EPH receptor A8	protein coding gene	no	ENST00000166244.7	4.258	0.000	1.419	0.025(235)	0(0)	0.156(2717)	non tumor-specific	nAS	yes
CCDC114_LS007	chr19:48301097|48302694:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	ENST00000497273.1	1.147	0.269	0.878	0.002(23)	0.001(1)	0.081(1408)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_KRT14_LS0012	chr17:41582506|41583258:+	KRT14	keratin 14	protein coding gene	no	.	252.451	179.504	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCNH2_LS013	chr7:150958502|150959572:-	KCNH2	potassium voltage-gated channel subfamily H member 2	protein coding gene	no	ENST00000262186.9;ENST00000532957.5	2.054	0.786	4.885	0.361(3461)	0.326(229)	0.552(9597)	non tumor-specific	nAS	yes
PGD_LS010	chr1:10403136|10404161:+	PGD	phosphogluconate dehydrogenase	protein coding gene	no	ENST00000491493.5;ENST00000477958.5;ENST00000270776.12;ENST00000465632.5	177.008	115.556	77.335	0.999(9567)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ORC3_LS0038	chr6:87661658|87663003:+	ORC3	origin recognition complex subunit 3	protein coding gene	no	.	1.216	0.838	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CC2D1A_LS030	chr19:13928030|13928127:+	CC2D1A	coiled-coil and C2 domain containing 1A	protein coding gene	no	ENST00000589606.5;ENST00000587508.1	2.685	2.992	5.693	0.963(9222)	0.943(662)	0.969(16851)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
WFDC11_LS005	chr20:45667169|45670182:-	WFDC11	WAP four-disulfide core domain 11	protein coding gene	no	ENST00000356562.6	0.191	0.000	0.765	0.002(15)	0.001(1)	0(4)	non tumor-specific	nAS	yes
UN_COMMD1_LS0029	chr2:61972026|62000701:+	COMMD1	copper metabolism domain containing 1	protein coding gene	no	.	12.619	0.883	0.000	0.002(23)	0.017(12)	0(0)	non tumor-specific	alt_5prime	no
ZNF277_LS012	chr7:112337826|112339843:+	ZNF277	zinc finger protein 277	protein coding gene	no	ENST00000361822.7;ENST00000361946.8;ENST00000421864.2	37.125	22.531	24.715	0.995(9532)	0.997(700)	0.979(17011)	non tumor-specific	exon_skip	yes
PARP10_LS014	chr8:143985648|143985721:-	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	ENST00000524918.5;ENST00000313028.11;ENST00000525773.5;ENST00000527262.5;ENST00000533665.1;ENST00000525879.5;ENST00000528625.5	37.215	19.243	29.557	0.991(9490)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CIR1_LS001	chr2:174349172|174350660:-	CIR1	corepressor interacting with RBPJ, CIR1	protein coding gene	no	ENST00000342016.7;ENST00000464393.1	85.689	51.382	53.344	0.987(9457)	0.987(693)	0.979(17021)	non tumor-specific	exon_skip	yes
MAP4K2_LS041	chr11:64802653|64802885:-	MAP4K2	mitogen-activated protein kinase kinase kinase kinase 2	protein coding gene	no	ENST00000294066.6;ENST00000377350.7;ENST00000439069.5;ENST00000482314.5;ENST00000468062.5	10.160	5.490	8.836	0.937(8978)	0.947(665)	0.971(16882)	non tumor-specific	alt_3prime;exon_skip	yes
MTMR10_LS029	chr15:30976955|30990777:-	MTMR10	myotubularin related protein 10	protein coding gene	no	ENST00000435680.5;ENST00000568604.5;ENST00000567567.5;ENST00000563714.5;ENST00000565728.5	13.423	15.962	12.146	0.865(8286)	0.977(686)	0.973(16915)	non tumor-specific	exon_skip	yes
UTP4_LS005	chr16:69133012|69133458:+	UTP4	UTP4 small subunit processome component	protein coding gene	no	ENST00000567235.6	0.040	0.025	0.613	0.309(2963)	0.274(192)	0.024(413)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_ARVCF_LS0032	chr22:19979015|19979743:-	ARVCF	ARVCF delta catenin family member	protein coding gene	no	.	2.042	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ATP10D_LS027	chr4:47582961|47587019:+	ATP10D	ATPase phospholipid transporting 10D (putative)	protein coding gene	no	ENST00000505277.1	1.275	1.027	2.164	0.477(4572)	0.631(443)	0.788(13692)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC018659.2_UP_LS0005	chr12:97644607|97713668:-	AC018659.2	-	lncRNA gene	no	.	6.873	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GSTA5_UP_LS0002	chr6:52848032|52897825:-	GSTA5	glutathione S-transferase alpha 5	protein coding gene	no	.	1.669	0.579	0.000	0.069(657)	0.125(88)	0(0)	non tumor-specific	nAS	no
UN_AC004982.2_LS0005	chr7:7564324|7565914:-	AC004982.2	-	lncRNA gene	no	.	3.182	1.097	0.000	0.061(589)	0.05(35)	0(0)	non tumor-specific	nAS	no
ATP2B1_LS014	chr12:89610043|89610421:-	ATP2B1	ATPase plasma membrane Ca2+ transporting 1	protein coding gene	no	ENST00000359142.7;ENST00000261173.6;ENST00000428670.7;ENST00000393164.6;ENST00000551009.5;ENST00000549727.1	30.391	26.438	12.808	0.959(9184)	0.989(694)	0.974(16929)	non tumor-specific	nAS	yes
UN_AC018553.1_UP_LS0015	chr16:54285659|54290210:+	AC018553.1	-	lncRNA gene	no	.	1.005	0.199	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MTR_LS0042	chr1:236894557|236895287:+	MTR	5-methyltetrahydrofolate-homocysteine methyltransferase	protein coding gene	no	.	4.139	1.015	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC093525.1_LS0049	chr16:2519413|2519541:+	AC093525.1	-	protein coding gene	no	.	20.126	12.808	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
PRIM2_LS001	chr6:57314920|57318437:+	PRIM2	DNA primase subunit 2	protein coding gene	no	ENST00000370687.6	0.004	0.002	0.540	0.221(2116)	0.132(93)	0.011(186)	non tumor-specific	nAS	yes
PER3_LS005	chr1:7785586|7787198:+	PER3	period circadian regulator 3	protein coding gene	no	.;.	1.183	0.382	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RAPGEF6_LS026	chr5:131498518|131504626:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000514179.5	0.696	0.255	0.644	0.015(145)	0.02(14)	0.054(941)	non tumor-specific	alt_3prime	yes
FAF1_LS010	chr1:50582699|50583652:-	FAF1	Fas associated factor 1	protein coding gene	no	ENST00000396153.6;ENST00000494400.5;ENST00000371778.5;ENST00000472808.1	79.058	44.138	39.752	0.996(9539)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;exon_skip	yes
MIR205HG_LS007	chr1:209430476|209431743:+	MIR205HG	MIR205 host gene	lncRNA gene	no	ENST00000451937.5;ENST00000458250.5;ENST00000440276.2	35.047	17.138	23.044	0.428(4105)	0.417(293)	0.276(4799)	non tumor-specific	nAS	yes
UN_TBC1D9B_LS0156	chr5:179904812|179907312:-	TBC1D9B	TBC1 domain family member 9B	protein coding gene	no	.	1.325	0.169	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_RNF187_LS0065	chr1:228494094|228494275:-	RNF187	ring finger protein 187	protein coding gene	no	.	3.107	0.251	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ADRA2C_UP_LS0001	chr4:3463586|3683313:+	ADRA2C	adrenoceptor alpha 2C	protein coding gene	no	.	11.155	0.859	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MRPL57_LS0002	chr13:21176717|21176862:+	MRPL57	mitochondrial ribosomal protein L57	protein coding gene	no	.	6.160	0.859	0.000	0.034(323)	0.033(23)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SEC24B_LS0017	chr4:109463644|109491327:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	.	1.993	0.205	0.000	0.012(118)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_FGFR2_LS0016	chr10:121503941|121505729:-	FGFR2	fibroblast growth factor receptor 2	protein coding gene	yes	.	2.860	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	nAS	no
SRSF11_LS013	chr1:70228555|70231859:+	SRSF11	serine and arginine rich splicing factor 11	protein coding gene	no	ENST00000475204.5	0.723	0.790	8.434	0.497(4761)	0.509(357)	0.965(16773)	non tumor-specific	alt_3prime;exon_skip	yes
SQSTM1_LS029	chr5:179833246|179833593:+	SQSTM1	sequestosome 1	protein coding gene	yes	.;.	123.646	37.415	0.000	0.018(168)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC35B2_LS011	chr6:44256878|44257769:-	SLC35B2	solute carrier family 35 member B2	protein coding gene	no	ENST00000615337.4	0.002	0.008	0.642	0.15(1440)	0.107(75)	0.019(333)	non tumor-specific	nAS	yes
UN_ICOSLG_LS0004	chr21:44225532|44225645:-	ICOSLG	inducible T cell costimulator ligand	protein coding gene	no	.	4.192	0.275	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_PPP2R5C_LS0023	chr14:101797355|101856686:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	.	1.988	0.362	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC131902.1_UP_LS0022	chr8:53408788|53414197:-	AC131902.1	-	lncRNA gene	no	.	7.540	0.220	0.000	0.023(223)	0.007(5)	0(0)	non tumor-specific	nAS	no
STAT6_LS017	chr12:57100090|57102290:-	STAT6	signal transducer and activator of transcription 6	protein coding gene	no	ENST00000300134.7;ENST00000555222.5;ENST00000538913.6;ENST00000543873.6;ENST00000556155.5;ENST00000537215.6;ENST00000454075.7;ENST00000554764.5;ENST00000640254.1;ENST00000555375.5;ENST00000300134.7;ENST00000555222.5;ENST00000538913.6;ENST00000543873.6;ENST00000556155.5;ENST00000537215.6;ENST00000454075.7;ENST00000554764.5;ENST00000640254.1;ENST00000555375.5	99.611	77.119	154.723	0.997(9552)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SRPK3_LS0026	chrX:153783763|153784116:-	SRPK3	SRSF protein kinase 3	protein coding gene	no	.	1.461	0.081	0.000	0.009(87)	0.006(4)	0(0)	non tumor-specific	nAS	no
WASH5P_LS003	chr19:66047|66346:-	WASH5P	WASP family homolog 5, pseudogene	pseudogene	no	ENST00000632089.1	1.831	0.577	1.090	0.005(47)	0.003(2)	0.543(9447)	non tumor-specific	nAS	yes
UN_AC008125.1_UP_LS0016	chr12:115015729|115062746:+	AC008125.1	-	lncRNA gene	no	.	2.153	0.653	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TMEM241_LS0001	chr18:23197444|23213977:+	TMEM241	transmembrane protein 241	protein coding gene	no	.	1.914	0.509	0.000	0.011(104)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_RABL6_LS0026	chr9:136829484|136829843:+	RABL6	RAB, member RAS oncogene family like 6	protein coding gene	no	.	9.253	2.607	0.000	0.004(35)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ARHGEF15_LS008	chr17:8314964|8315066:+	ARHGEF15	Rho guanine nucleotide exchange factor 15	protein coding gene	no	ENST00000361926.7;ENST00000421050.2;ENST00000647883.1;ENST00000578286.1	3.512	6.107	7.260	0.805(7713)	0.912(640)	0.86(14941)	non tumor-specific	exon_skip	yes
ZFAND2A_LS004	chr7:1153224|1157656:-	ZFAND2A	zinc finger AN1-type containing 2A	protein coding gene	no	.;.	114.297	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PKP3_LS0048	chr11:397121|397206:-	PKP3	plakophilin 3	protein coding gene	no	.	2.643	1.582	0.000	0.01(96)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AP001273.2_LS0013	chr11:93742094|93743018:+	AP001273.2	-	protein coding gene	no	.	0.646	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093720.1_UP_LS0021	chr4:68745690|68757292:+	AC093720.1	-	pseudogene	no	.	3.503	0.103	0.000	0.021(202)	0.009(6)	0(0)	non tumor-specific	nAS	no
FTX_LS021	chrX:74281848|74292427:-	FTX	FTX transcript, XIST regulator	lncRNA gene	no	ENST00000638681.1;ENST00000602576.5;ENST00000602776.5;ENST00000429124.5	0.579	0.653	1.561	0.685(6559)	0.812(570)	0.754(13100)	non tumor-specific	nAS	yes
UN_CIC_LS0113	chr19:42292859|42292934:+	CIC	capicua transcriptional repressor	protein coding gene	yes	.	9.993	4.807	0.000	0.026(249)	0.034(24)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RYR1_LS114	chr19:38578204|38579982:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7	25.417	8.066	6.110	0.694(6646)	0.774(543)	0.912(15844)	non tumor-specific	alt_3prime;exon_skip	yes
RYR2_LS109	chr1:237828445|237831514:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000608590.5	0.431	0.034	1.154	0.004(37)	0.007(5)	0.216(3761)	non tumor-specific	exon_skip	yes
ZNF579_LS001	chr19:55579641|55580795:-	ZNF579	zinc finger protein 579	protein coding gene	no	ENST00000325421.6	3.328	1.129	3.422	0.759(7270)	0.692(486)	0.903(15702)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LONP1_LS023	chr19:5712002|5713134:-	LONP1	lon peptidase 1, mitochondrial	protein coding gene	no	ENST00000360614.7;ENST00000585374.5;ENST00000593119.5;ENST00000540670.6;ENST00000590729.5	112.196	69.642	49.419	0.994(9523)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ST7L_LS043	chr1:112616895|112618909:-	ST7L	suppression of tumorigenicity 7 like	protein coding gene	no	ENST00000361846.7;ENST00000360743.8;ENST00000358039.8;ENST00000490715.5;ENST00000343210.11;ENST00000497235.5;ENST00000479436.5;ENST00000473206.5;ENST00000498383.5;ENST00000467335.5;ENST00000361846.7;ENST00000360743.8;ENST00000358039.8;ENST00000490715.5;ENST00000343210.11;ENST00000497235.5;ENST00000479436.5;ENST00000473206.5;ENST00000498383.5;ENST00000467335.5	8.198	5.089	10.702	0.97(9292)	0.986(692)	0.972(16888)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CLDN12_LS028	chr7:90479274|90494367:+	CLDN12	claudin 12	protein coding gene	no	ENST00000498033.5;ENST00000483862.5;ENST00000485696.1	0.591	0.286	1.336	0.56(5368)	0.634(445)	0.661(11494)	non tumor-specific	nAS	yes
METTL4_LS003	chr18:2539145|2547355:-	METTL4	methyltransferase like 4	protein coding gene	no	ENST00000576251.5	0.375	0.252	0.773	0.426(4083)	0.409(287)	0.283(4926)	non tumor-specific	exon_skip	yes
METAP2_LS011	chr12:95484873|95485879:+	METAP2	methionyl aminopeptidase 2	protein coding gene	no	ENST00000549808.1	0.128	0.061	0.653	0.097(929)	0.091(64)	0.013(227)	non tumor-specific	nAS	yes
KDM5A_LS017	chr12:323781|328835:-	KDM5A	lysine demethylase 5A	protein coding gene	yes	ENST00000399788.6;ENST00000544760.1;ENST00000540168.1	15.559	10.220	10.157	0.936(8972)	0.973(683)	0.967(16803)	non tumor-specific	nAS	yes
CNTN6_LS007	chr3:1128377|1147927:+	CNTN6	contactin 6	protein coding gene	no	ENST00000413210.1	0.327	0.127	0.935	0.051(485)	0.127(89)	0.094(1627)	non tumor-specific	exon_skip	yes
UN_AC010409.2_UP_LS0018	chr5:119975018|119992203:-	AC010409.2	-	pseudogene	no	.	6.352	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HELZ2_LS0036	chr20:63561286|63561350:-	HELZ2	helicase with zinc finger 2	protein coding gene	no	.	5.959	0.134	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
MTFR1L_LS019	chr1:25823323|25823644:+	MTFR1L	mitochondrial fission regulator 1 like	protein coding gene	no	ENST00000528624.5;ENST00000464008.6;ENST00000530599.5	0.150	0.164	3.680	0.715(6849)	0.835(586)	0.942(16378)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
POLR3B_LS010	chr12:106380139|106393031:+	POLR3B	RNA polymerase III subunit B	protein coding gene	no	ENST00000228347.8;ENST00000539066.5	7.541	5.440	3.291	0.831(7959)	0.95(667)	0.89(15477)	non tumor-specific	nAS	yes
UN_SMG1P2_LS0034	chr16:29569328|29569612:-	SMG1P2	SMG1 pseudogene 2	pseudogene	no	.	1.049	0.104	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
CEMIP2_LS007	chr9:71699449|71700642:-	CEMIP2	cell migration inducing hyaluronidase 2	protein coding gene	no	ENST00000377055.1	0.273	0.130	0.706	0.126(1207)	0.105(74)	0.071(1241)	non tumor-specific	nAS	yes
UN_GLG1_LS0034	chr16:74452763|74452839:-	GLG1	golgi glycoprotein 1	protein coding gene	no	.	9.894	7.923	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_LHX1-DT_LS0015	chr17:36863413|36871209:-	LHX1-DT	LHX1 divergent transcript	lncRNA gene	no	.	4.927	1.110	0.000	0.002(20)	0.013(9)	0(0)	non tumor-specific	nAS	no
SKA2_LS014	chr17:59124428|59131281:-	SKA2	spindle and kinetochore associated complex subunit 2	protein coding gene	no	ENST00000578519.5	0.018	0.090	0.712	0.188(1798)	0.123(86)	0.12(2084)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_PSMB7_LS0025	chr9:124384656|124386007:-	PSMB7	proteasome 20S subunit beta 7	protein coding gene	no	.	1.103	19.445	0.000	0.002(16)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_PTMA_LS0048	chr2:231711402|231712849:-	PTMA	prothymosin alpha	protein coding gene	yes	.	1.494	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
FBXO21_LS004	chr12:117155948|117157873:-	FBXO21	F-box protein 21	protein coding gene	no	ENST00000622495.4;ENST00000427718.6;ENST00000550180.5;ENST00000330622.9;ENST00000547806.1;ENST00000548840.1	47.584	45.736	21.992	0.979(9380)	0.991(696)	0.971(16880)	non tumor-specific	exon_skip	yes
UN_TMEM184A_LS0014	chr7:1544916|1545638:-	TMEM184A	transmembrane protein 184A	protein coding gene	no	.	1.642	0.183	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AP000769.1_UP_LS0001	chr11:65451100|65452869:+	AP000769.1	-	pseudogene	no	.	4.246	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
HIGD1B_LS005	chr17:44848252|44849106:+	HIGD1B	HIG1 hypoxia inducible domain family member 1B	protein coding gene	no	ENST00000590423.1;ENST00000586911.1	0.344	0.201	2.351	0.557(5340)	0.593(416)	0.626(10885)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_HID1_LS0068	chr17:74960089|74961873:-	HID1	HID1 domain containing	protein coding gene	no	.	3.529	0.018	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DUOX1_LS051	chr15:45162377|45163532:+	DUOX1	dual oxidase 1	protein coding gene	no	ENST00000321429.8;ENST00000389037.7;ENST00000561220.6;ENST00000561166.1	28.734	43.851	4.384	0.55(5272)	0.605(425)	0.771(13401)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_MADD_LS0048	chr11:47321991|47323671:+	MADD	MAP kinase activating death domain	protein coding gene	yes	.	0.985	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
SRA1_LS008	chr5:140557272|140557428:-	SRA1	steroid receptor RNA activator 1	protein coding gene	no	ENST00000336283.7	5.594	6.202	43.508	0.99(9489)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PPT2-EGFL8_LS025	chr6:32169501|32169908:+	PPT2-EGFL8	PPT2-EGFL8 readthrough (NMD candidate)	protein coding gene	no	ENST00000422437.5	0.626	0.172	0.752	0.065(621)	0.043(30)	0.226(3928)	non tumor-specific	nAS	yes
UN_AL358113.1_LS0017	chr9:69053260|69064940:+	AL358113.1	-	protein coding gene	no	.	5.833	0.369	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ZFPM1_LS0063	chr16:88533199|88533260:-	ZFPM1	zinc finger protein, FOG family member 1	protein coding gene	no	.	1.681	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
C8A_LS002	chr1:56867702|56874949:+	C8A	complement C8 alpha chain	protein coding gene	no	ENST00000361249.3	54.717	78.004	0.911	0.05(477)	0.093(65)	0.042(727)	non tumor-specific	exon_skip	yes
TPPP2_LS005	chr14:21030754|21031012:+	TPPP2	tubulin polymerization promoting protein family member 2	protein coding gene	no	ENST00000321760.10;ENST00000460647.6;ENST00000530140.6;ENST00000472458.5;ENST00000481535.5;ENST00000495665.2	0.692	1.059	0.869	0.013(122)	0.084(59)	0.28(4863)	non tumor-specific	intron_retention	yes
FBXO43_LS003	chr8:100137667|100140683:-	FBXO43	F-box protein 43	protein coding gene	no	ENST00000428847.2;ENST00000517806.5;ENST00000520987.1	0.500	0.052	0.732	0.196(1881)	0.024(17)	0.134(2335)	non tumor-specific	exon_skip	yes
UN_RAB11FIP3_LS0022	chr16:477656|482525:+	RAB11FIP3	RAB11 family interacting protein 3	protein coding gene	no	.	3.022	2.234	0.000	0.011(102)	0.04(28)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ATP2C1_LS0004	chr3:130867880|130867957:-	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	.	15.396	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCTS1_LS0008	chrX:120603012|120603985:-	MCTS1	MCTS1 re-initiation and release factor	protein coding gene	yes	.	1.698	0.301	0.000	0.015(141)	0.014(10)	0(0)	non tumor-specific	nAS	no
REPS1_LS033	chr6:138941489|138943853:-	REPS1	RALBP1 associated Eps domain containing 1	protein coding gene	no	ENST00000530575.1;ENST00000530575.1	0.060	0.051	1.356	0.404(3869)	0.493(346)	0.516(8977)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
COMMD4_LS014	chr15:75338133|75338355:+	COMMD4	COMM domain containing 4	protein coding gene	no	ENST00000267935.12;ENST00000567195.5;ENST00000562610.5;ENST00000338995.10;ENST00000567023.5;ENST00000567720.5;ENST00000564587.5;ENST00000480484.5;ENST00000561662.1;ENST00000568301.1;ENST00000568877.5	91.295	48.209	81.430	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
E4F1_LS014	chr16:2233183|2233438:+	E4F1	E4F transcription factor 1	protein coding gene	no	ENST00000301727.8;ENST00000565090.5;ENST00000564139.5	19.083	10.481	32.040	0.987(9454)	0.994(698)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ZDHHC13_LS0005	chr11:19117276|19142983:+	ZDHHC13	zinc finger DHHC-type palmitoyltransferase 13	protein coding gene	no	.	2.569	1.500	0.000	0.075(716)	0.087(61)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
BANP_LS025	chr16:87984259|88003811:+	BANP	BTG3 associated nuclear protein	protein coding gene	yes	ENST00000485772.5	0.039	0.013	0.713	0.108(1032)	0.097(68)	0.167(2906)	non tumor-specific	exon_skip	yes
RPUSD3_LS019	chr3:9842243|9843890:-	RPUSD3	RNA pseudouridine synthase D3	protein coding gene	no	ENST00000433555.1;ENST00000433555.1	0.747	0.399	0.840	0.508(4871)	0.436(306)	0.398(6919)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
DOC2GP_LS011	chr11:67615842|67616011:-	DOC2GP	double C2 domain gamma, pseudogene	pseudogene	no	ENST00000514950.1;ENST00000639172.1	1.864	0.437	2.955	0.038(367)	0.034(24)	0.792(13769)	non tumor-specific	nAS	yes
UN_BET1_UP_LS0003	chr7:94072336|94090743:-	BET1	Bet1 golgi vesicular membrane trafficking protein	protein coding gene	no	.	4.346	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC138696.2_UP_LS0011	chr8:143302870|143303366:-	AC138696.2	-	lncRNA gene	no	.	1.231	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RRP1_LS0007	chr21:43798049|43799570:+	RRP1	ribosomal RNA processing 1B	protein coding gene	no	.	13.665	2.243	0.000	0.008(75)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
KLHL13_LS004	chrX:117919717|117920238:-	KLHL13	kelch like family member 13	protein coding gene	no	ENST00000371882.5;ENST00000371876.5;ENST00000371878.5;ENST00000262820.7;ENST00000545703.5;ENST00000540167.5;ENST00000541812.5;ENST00000469946.5	9.184	11.672	3.489	0.68(6517)	0.858(602)	0.85(14773)	non tumor-specific	exon_skip	yes
SEC14L1_LS147	chr17:77215792|77215832:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	4.750	1.365	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
KANK2_LS023	chr19:11195820|11196050:-	KANK2	KN motif and ankyrin repeat domains 2	protein coding gene	no	ENST00000592903.5;ENST00000592215.1	1.871	3.280	12.364	0.884(8468)	0.967(679)	0.939(16316)	non tumor-specific	alt_3prime;exon_skip	yes
CARD14_LS030	chr17:80192619|80195191:+	CARD14	caspase recruitment domain family member 14	protein coding gene	no	ENST00000573882.5;ENST00000648509.1;ENST00000575500.5;ENST00000570421.5;ENST00000344227.6;ENST00000571450.1;ENST00000573754.5;ENST00000571861.5;ENST00000574148.5;ENST00000575666.1;ENST00000649277.1	2.122	0.995	1.945	0.578(5538)	0.359(252)	0.395(6868)	non tumor-specific	nAS	yes
UN_MCU_LS0029	chr10:72884382|72885749:+	MCU	mitochondrial calcium uniporter	protein coding gene	no	.	6.745	3.913	0.000	0.18(1729)	0.178(125)	0(0)	non tumor-specific	alt_3prime	no
NDC1_LS003	chr1:53787258|53789133:-	NDC1	NDC1 transmembrane nucleoporin	protein coding gene	no	ENST00000371429.3	31.050	11.697	6.760	0.991(9498)	0.997(700)	0.963(16740)	non tumor-specific	exon_skip	yes
UN_KRT8P4_UP_LS0057	chr8:89605549|89605723:-	KRT8P4	keratin 8 pseudogene 4	pseudogene	no	.	1.076	0.660	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MIR4693_UP_LS0001	chr11:103069195|103113537:+	MIR4693	microRNA 4693	small non-coding RNA gene	no	.	1.282	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ITGA4_LS029	chr2:181531776|181534272:+	ITGA4	integrin subunit alpha 4	protein coding gene	no	ENST00000397033.6	26.938	6.798	3.542	0.759(7272)	0.848(595)	0.831(14446)	non tumor-specific	nAS	yes
UN_ARVCF_LS0019	chr22:19976677|19977430:-	ARVCF	ARVCF delta catenin family member	protein coding gene	no	.	1.136	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TMEM217_LS007	chr6:37215282|37257568:-	TMEM217	transmembrane protein 217	protein coding gene	no	ENST00000478262.1	0.125	0.001	0.617	0.004(34)	0.004(3)	0.005(86)	non tumor-specific	nAS	yes
UN_TIMP2_LS0020	chr17:78853884|78854137:+	TIMP2	TIMP metallopeptidase inhibitor 2	protein coding gene	no	.	2.939	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATXN1_LS0076	chr6:16679267|16679364:+	ATXN1	ataxin 1	protein coding gene	no	.	13.297	0.223	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
WDR44_LS003	chrX:118378452|118387340:+	WDR44	WD repeat domain 44	protein coding gene	no	ENST00000254029.7;ENST00000371825.7	9.612	7.840	6.005	0.844(8083)	0.95(667)	0.945(16431)	non tumor-specific	exon_skip	yes
UN_AC005324.4_LS0015	chr17:15734923|15735720:-	AC005324.4	-	protein coding gene	no	.	2.946	0.183	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF638_LS031	chr2:71361695|71363153:+	ZNF638	zinc finger protein 638	protein coding gene	no	ENST00000466330.5	0.214	0.047	0.640	0.016(156)	0.011(8)	0.07(1224)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_AC130352.1_UP_LS0040	chr8:12437710|12438340:+	AC130352.1	-	lncRNA gene	no	.	1.017	0.094	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
USP28_LS007	chr11:113805046|113808298:-	USP28	ubiquitin specific peptidase 28	protein coding gene	no	ENST00000544967.5;ENST00000545540.5;ENST00000540438.5	23.329	11.866	10.419	0.96(9200)	0.98(688)	0.968(16825)	non tumor-specific	exon_skip	yes
UN_SHISA6_LS0025	chr17:11276843|11379414:+	SHISA6	shisa family member 6	protein coding gene	no	.	5.277	1.113	0.000	0.024(229)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_PIGV_LS0016	chr1:26795234|26795880:+	PIGV	phosphatidylinositol glycan anchor biosynthesis class V	protein coding gene	no	.	3.252	0.722	0.000	0.034(326)	0.047(33)	0(0)	non tumor-specific	nAS	no
AC005392.1_LS001	chr19:43153611|43155172:+	AC005392.1	-	lncRNA gene	no	ENST00000419624.1	0.279	0.000	0.683	0.001(11)	0(0)	0.001(26)	non tumor-specific	nAS	yes
UN_NPY4R_UP_LS0010	chr10:46554711|46556498:-	NPY4R	neuropeptide Y receptor Y4	protein coding gene	no	.	1.452	1.279	0.000	0.029(279)	0.068(48)	0(0)	non tumor-specific	nAS	no
UN_SH2B1_LS0027	chr16:28863754|28864798:+	SH2B1	SH2B adaptor protein 1	protein coding gene	no	.	3.315	0.385	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LGALS3BP_LS0340	chr17:78972247|78972554:+	LGALS3BP	galectin 3 binding protein	protein coding gene	no	.	24.809	1.842	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FRRS1_LS0010	chr1:99719647|99725206:-	FRRS1	ferric chelate reductase 1	protein coding gene	no	.	0.750	0.304	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MELTF-AS1_UP_LS0016	chr3:196977204|196978736:+	MELTF-AS1	MELTF antisense RNA 1	lncRNA gene	no	.	1.931	0.210	0.000	0.025(243)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_MX2_LS0013	chr21:41382564|41387126:+	MX2	MX dynamin like GTPase 2	protein coding gene	no	.	5.121	0.043	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
SUGT1P4-STRA6LP_LS013	chr9:97292675|97293947:+	SUGT1P4-STRA6LP	SUGT1P4-STRA6LP readthrough	lncRNA gene	no	ENST00000375204.2	0.860	0.318	1.569	0.111(1062)	0.199(140)	0.687(11945)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LIPJ_UP_LS0015	chr10:88042690|88057994:+	LIPJ	lipase family member J	protein coding gene	no	.	2.324	0.156	0.000	0.009(83)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ROPN1L-AS1_UP_LS0024	chr5:10491914|10493318:-	ROPN1L-AS1	ROPN1L antisense RNA 1	lncRNA gene	no	.	3.768	0.055	0.000	0.007(66)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM182_LS003	chr2:102737013|102762587:+	TMEM182	transmembrane protein 182	protein coding gene	no	ENST00000639249.1;ENST00000409528.5;ENST00000469971.5;ENST00000488134.5	4.741	2.201	2.200	0.896(8580)	0.892(626)	0.821(14267)	non tumor-specific	exon_skip	yes
UN_IGHA1_LS0167	chr14:105708279|105708359:-	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	331.755	289.222	0.000	0.024(233)	0.058(41)	0(0)	non tumor-specific	nAS	no
BCORL1_LS023	chrX:130052016|130055854:+	BCORL1	BCL6 corepressor like 1	protein coding gene	yes	ENST00000218147.11;ENST00000540052.5;ENST00000456822.5	16.109	8.795	12.470	0.961(9206)	0.952(668)	0.977(16984)	non tumor-specific	nAS	yes
LAMB4_LS001	chr7:108024178|108029043:-	LAMB4	laminin subunit beta 4	protein coding gene	no	ENST00000205386.8;ENST00000388781.7;ENST00000483484.5	2.860	1.104	1.543	0.06(574)	0.241(169)	0.375(6522)	non tumor-specific	nAS	yes
UN_GLT8D1_UP_LS0001	chr3:52707738|52743352:-	GLT8D1	glycosyltransferase 8 domain containing 1	protein coding gene	no	.	2.715	0.568	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
F11R_LS007	chr1:161000348|161001020:-	F11R	F11 receptor	protein coding gene	no	ENST00000537746.1	1.169	1.704	0.762	0.476(4560)	0.58(407)	0.127(2210)	non tumor-specific	exon_skip	yes
HSPBP1_LS018	chr19:55280108|55280218:-	HSPBP1	HSPA (Hsp70) binding protein 1	protein coding gene	no	ENST00000255631.9;ENST00000588971.1	0.165	0.232	0.907	0.62(5945)	0.548(385)	0.494(8590)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
CRLF2_LS008	chrX:1206599|1208806:-	CRLF2	cytokine receptor like factor 2	protein coding gene	yes	ENST00000381566.6;ENST00000400841.7;ENST00000467626.6	2.738	0.292	0.797	0.084(806)	0.028(20)	0.205(3572)	non tumor-specific	nAS	yes
UN_TAB3_LS0011	chrX:30835295|30839020:+	TAB3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3	protein coding gene	no	.	3.702	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GPS1_LS0006	chr17:82051524|82052375:+	GPS1	G protein pathway suppressor 1	protein coding gene	no	.	1.308	1.039	0.000	0.003(24)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
VAV3_LS030	chr1:107755513|107757261:-	VAV3	vav guanine nucleotide exchange factor 3	protein coding gene	yes	ENST00000370056.8;ENST00000527011.5;ENST00000343258.8;ENST00000469325.5;ENST00000490388.2	4.468	1.917	1.971	0.379(3631)	0.556(390)	0.708(12298)	non tumor-specific	exon_skip	yes
APCDD1L-DT_LS012	chr20:58547928|58573576:+	APCDD1L-DT	APCDD1L divergent transcript	lncRNA gene	no	ENST00000439558.5;ENST00000424205.1	1.925	0.607	0.807	0.127(1220)	0.296(208)	0.18(3122)	non tumor-specific	nAS	yes
UN_CRHR2_LS0001	chr7:30654423|30665869:+	CRHR2	corticotropin releasing hormone receptor 2	protein coding gene	no	.	3.600	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
HMOX2_LS013	chr16:4483754|4495900:+	HMOX2	heme oxygenase 2	protein coding gene	no	ENST00000574594.5	0.002	0.005	0.634	0.031(297)	0.016(11)	0.012(211)	non tumor-specific	exon_skip	yes
ITGA1_LS009	chr5:52865817|52881873:+	ITGA1	integrin subunit alpha 1	protein coding gene	no	ENST00000282588.6;ENST00000513737.5;ENST00000509049.1	17.621	19.880	11.429	0.842(8066)	0.949(666)	0.899(15619)	non tumor-specific	nAS	yes
PRRC2C_LS036	chr1:171584541|171587003:+	PRRC2C	proline rich coiled-coil 2C	protein coding gene	no	ENST00000644916.1	11.273	6.032	0.000	0.27(2588)	0.342(240)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ISCA1_LS0005	chr9:86266191|86266458:-	ISCA1	iron-sulfur cluster assembly 1	protein coding gene	no	.	3.672	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
NASP_LS022	chr1:45606591|45607321:+	NASP	nuclear autoantigenic sperm protein	protein coding gene	no	ENST00000537798.5;ENST00000529333.5;ENST00000527470.5;ENST00000453748.5;ENST00000534101.1;ENST00000350030.7;ENST00000470768.5	31.468	4.489	14.899	0.979(9383)	0.977(686)	0.959(16665)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_PTPRS_LS0019	chr19:5208018|5208237:-	PTPRS	protein tyrosine phosphatase receptor type S	protein coding gene	no	.	8.071	0.351	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
U91319.1_LS003	chr16:13350421|13474210:+	U91319.1	-	lncRNA gene	no	ENST00000571619.5	4.546	0.892	1.105	0.101(963)	0.14(98)	0.267(4645)	non tumor-specific	nAS	yes
UCK2_LS013	chr1:165903279|165905921:+	UCK2	uridine-cytidine kinase 2	protein coding gene	no	ENST00000367879.8;ENST00000642653.1;ENST00000462329.5;ENST00000464197.5;ENST00000469256.6;ENST00000470820.1;ENST00000463772.5;ENST00000479872.5	80.550	24.303	28.116	0.999(9567)	0.997(700)	0.979(17013)	non tumor-specific	exon_skip	yes
ZIM2-AS1_LS003	chr19:56790078|56791055:+	ZIM2-AS1	ZIM2 antisense RNA 1	lncRNA gene	no	ENST00000595954.1	1.702	0.508	1.511	0.1(956)	0.036(25)	0.22(3830)	non tumor-specific	nAS	yes
UN_ZFYVE28_LS0039	chr4:2339914|2340040:+	ZFYVE28	zinc finger FYVE-type containing 28	protein coding gene	no	.	3.252	1.085	0.000	0.007(70)	0.019(13)	0(0)	non tumor-specific	nAS	no
AC007192.2_LS001	chr19:18144607|18151315:-	AC007192.2	-	lncRNA gene	no	ENST00000600364.2	0.011	0.048	0.717	0.383(3669)	0.405(284)	0.02(351)	non tumor-specific	nAS	yes
UN_AQP5_LS0016	chr12:49964705|49964992:+	AQP5	aquaporin 5	protein coding gene	no	.	7.570	1.345	0.000	0.01(96)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_LINC00662_LS0012	chr19:27715858|27727817:-	LINC00662	long intergenic non-protein coding RNA 662	lncRNA gene	no	.	0.895	0.163	0.000	0.008(77)	0.016(11)	0(0)	non tumor-specific	nAS	no
UN_PPARA_LS0029	chr22:46188822|46198342:+	PPARA	peroxisome proliferator activated receptor alpha	protein coding gene	yes	.	0.989	0.512	0.000	0.029(280)	0.047(33)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NLRC5_LS0071	chr16:57081181|57081524:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	.	1.568	0.309	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CALCOCO1_LS018	chr12:53716047|53716260:-	CALCOCO1	calcium binding and coiled-coil domain 1	protein coding gene	no	ENST00000262059.8;ENST00000548263.5;ENST00000550804.5;ENST00000549935.6;ENST00000552282.1	55.160	57.031	109.916	0.99(9489)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTN-AS1_LS055	chr2:178542361|178597596:+	TTN-AS1	TTN antisense RNA 1	lncRNA gene	no	ENST00000592689.5;ENST00000590932.5	0.235	0.114	1.189	0.381(3651)	0.479(336)	0.584(10145)	non tumor-specific	nAS	yes
MYH10_LS014	chr17:8499476|8500826:-	MYH10	myosin heavy chain 10	protein coding gene	no	ENST00000360416.7;ENST00000379980.8;ENST00000269243.8	35.588	36.552	21.295	0.925(8859)	0.97(681)	0.952(16552)	non tumor-specific	nAS	yes
UN_C10orf143_LS0020	chr10:130089562|130091156:-	C10orf143	chromosome 10 open reading frame 143	protein coding gene	no	.	0.983	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
DMC1_LS012	chr22:38566736|38567583:-	DMC1	HID1 domain containing	protein coding gene	no	ENST00000428462.6;ENST00000216024.6;ENST00000439567.5;ENST00000616615.4;ENST00000478820.1;ENST00000415483.1	1.609	0.349	1.483	0.327(3134)	0.355(249)	0.658(11433)	non tumor-specific	exon_skip	yes
HGFAC_LS017	chr4:3445508|3446042:+	HGFAC	HGF activator	protein coding gene	no	.;.	1.474	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FCN2_LS005	chr9:134884772|134885239:+	FCN2	ficolin 2	protein coding gene	no	ENST00000291744.10;ENST00000350339.3	4.944	9.274	1.672	0.105(1003)	0.313(220)	0.386(6709)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AL161636.1_UP_LS0256	chr1:153093576|153112441:+	AL161636.1	-	lncRNA gene	no	.	14.360	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CYP4F11_LS015	chr19:15924882|15927212:-	CYP4F11	cytochrome P450 family 4 subfamily F member 11	protein coding gene	no	ENST00000326742.12;ENST00000248041.12;ENST00000620614.4;ENST00000402119.8	12.173	12.808	3.965	0.661(6331)	0.762(535)	0.64(11131)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAP2K5_LS0009	chr15:67563350|67586846:+	MAP2K5	mitogen-activated protein kinase kinase 5	protein coding gene	no	.	21.242	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
PEG3_LS028	chr19:56833420|56836018:-	PEG3	paternally expressed 3	protein coding gene	yes	ENST00000649233.1;ENST00000649233.1	0.331	0.168	0.925	0.068(651)	0.158(111)	0.115(1994)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PSME2_LS0013	chr14:24145180|24145243:-	PSME2	proteasome activator subunit 2	protein coding gene	no	.	66.855	4.957	0.000	0.014(132)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CHN1_LS008	chr2:174824518|174846309:-	CHN1	chimerin 1	protein coding gene	no	ENST00000413882.5	0.065	0.143	1.363	0.023(216)	0.011(8)	0.065(1134)	non tumor-specific	alt_5prime	yes
AC005154.4_LS002	chr7:30532729|30533396:+	AC005154.4	-	lncRNA gene	no	ENST00000583191.1	2.023	0.023	0.658	0.002(22)	0.001(1)	0.034(583)	non tumor-specific	nAS	yes
UNC13D_LS042	chr17:75843248|75843484:-	UNC13D	unc-13 homolog D	protein coding gene	no	ENST00000592386.5	0.157	0.119	0.817	0.295(2825)	0.311(218)	0.248(4317)	non tumor-specific	alt_3prime;mutex_exons	yes
MAP2K2_LS019	chr19:4101143|4101229:-	MAP2K2	mitogen-activated protein kinase kinase 2	protein coding gene	no	ENST00000262948.9;ENST00000601786.5;ENST00000394867.8;ENST00000597263.5;ENST00000593364.5;ENST00000602167.5;ENST00000597008.5;ENST00000599345.1	260.588	141.731	245.646	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CTSD_LS009	chr11:1757556|1757965:-	CTSD	cathepsin D	protein coding gene	no	ENST00000637158.1	2.052	0.000	0.724	0(1)	0(0)	0.243(4226)	non tumor-specific	nAS	yes
PIAS1_LS003	chr15:68055231|68055799:+	PIAS1	protein inhibitor of activated STAT 1	protein coding gene	yes	ENST00000545237.1	0.265	0.041	0.713	0.041(394)	0.051(36)	0.115(1996)	non tumor-specific	exon_skip	yes
ANXA2_LS083	chr15:60397338|60397943:-	ANXA2	annexin A2	protein coding gene	no	ENST00000421017.6;ENST00000558503.5;ENST00000558998.5;ENST00000559113.5;ENST00000557906.5;ENST00000559467.5;ENST00000558169.5;ENST00000557986.5;ENST00000560936.2;ENST00000421017.6;ENST00000558503.5;ENST00000558998.5;ENST00000559113.5;ENST00000557906.5;ENST00000559467.5;ENST00000558169.5;ENST00000557986.5;ENST00000560936.2	2.980	6.148	28.620	0.868(8313)	0.883(620)	0.95(16512)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
MYH3_LS010	chr17:10634182|10634840:-	MYH3	myosin heavy chain 3	protein coding gene	no	ENST00000583535.5	4.288	4.353	5.074	0.318(3050)	0.321(225)	0.954(16575)	non tumor-specific	exon_skip	yes
UN_SLC44A3_LS0037	chr1:94888605|94891130:+	SLC44A3	solute carrier family 44 member 3	protein coding gene	no	.	3.265	1.195	0.000	0.036(343)	0.02(14)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_AC008763.2_LS0013	chr19:7632830|7636272:-	AC008763.2	-	protein coding gene	no	.	3.193	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SCN9A_LS027	chr2:166306599|166306956:-	SCN9A	sodium voltage-gated channel alpha subunit 9	protein coding gene	no	ENST00000409672.5;ENST00000303354.11;ENST00000645907.1;ENST00000644316.1;ENST00000642356.1;ENST00000409435.6;ENST00000454569.6;ENST00000452182.2;ENST00000472119.2	3.260	1.032	0.965	0.155(1489)	0.232(163)	0.341(5926)	non tumor-specific	intron_retention	yes
ABCA7_LS034	chr19:1054341|1054570:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	7.852	3.123	7.976	0.787(7542)	0.816(573)	0.955(16608)	non tumor-specific	alt_3prime;exon_skip	yes
UN_VASP_LS0004	chr19:45507626|45522388:-	VASP	vasodilator stimulated phosphoprotein	protein coding gene	no	.	1.970	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NLRC5_LS045	chr16:57055094|57055433:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	ENST00000262510.10;ENST00000436936.5;ENST00000545081.5;ENST00000543030.5;ENST00000538453.5	8.247	3.536	4.182	0.858(8216)	0.835(586)	0.89(15472)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
SYT16_LS005	chr14:61970311|61995876:+	SYT16	synaptotagmin 16	protein coding gene	no	ENST00000636344.1	1.759	0.674	0.836	0.015(142)	0.011(8)	0.04(703)	non tumor-specific	nAS	yes
MDH1_LS010	chr2:63593628|63594488:+	MDH1	malate dehydrogenase 1	protein coding gene	no	ENST00000442225.5;ENST00000454035.5	0.013	0.036	0.801	0.713(6831)	0.751(527)	0.225(3910)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CABIN1_LS0085	chr22:24103285|24113566:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	1.880	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
C1orf21_LS005	chr1:184568485|184590739:+	C1orf21	chromosome 1 open reading frame 21	protein coding gene	no	ENST00000367514.7	0.566	1.177	0.840	0.191(1829)	0.258(181)	0.159(2756)	non tumor-specific	nAS	yes
UN_BOK_LS0178	chr2:241573044|241573326:-	BOK	BCL2 family apoptosis regulator BOK	protein coding gene	no	.	3.397	2.069	0.000	0.114(1091)	0.211(148)	0(0)	non tumor-specific	nAS	no
UN_LHFPL3_LS0061	chr7:104759822|104761474:-	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	.	17.940	0.000	0.000	0.028(264)	0(0)	0(0)	non tumor-specific	nAS	no
GALNT13_LS007	chr2:154140505|154236046:+	GALNT13	polypeptide N-acetylgalactosaminyltransferase 13	protein coding gene	no	ENST00000431076.5	0.205	0.059	0.860	0.045(435)	0.011(8)	0.064(1107)	non tumor-specific	exon_skip;mutex_exons	yes
UN_ZNF761_LS0160	chr19:53456152|53456489:-	ZNF761	zinc finger protein 761	protein coding gene	no	.	2.795	0.738	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL732372.3_UP_LS0007	chr1:498456|738834:-	AL732372.3	-	pseudogene	no	.	2.042	0.002	0.000	0.029(279)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_IQSEC3_LS0041	chr12:172309|174599:+	IQSEC3	IQ motif and Sec7 domain ArfGEF 3	protein coding gene	no	.	2.139	0.252	0.000	0.009(89)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_SPATA6_LS0010	chr1:48359770|48373811:-	SPATA6	spermatogenesis associated 6	protein coding gene	no	.	1.149	1.995	0.000	0.002(22)	0.013(9)	0(0)	non tumor-specific	alt_5prime	no
USP34_LS092	chr2:61383336|61394853:-	USP34	ubiquitin specific peptidase 34	protein coding gene	no	ENST00000398571.6;ENST00000453133.1	8.734	5.272	4.918	0.708(6785)	0.863(606)	0.919(15969)	non tumor-specific	exon_skip	yes
PANX2_LS005	chr22:50170956|50176941:+	PANX2	pannexin 2	protein coding gene	yes	.;.	2.003	0.240	0.000	0.025(244)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL590385.2_LS0031	chr1:161518083|161599700:+	AL590385.2	-	lncRNA gene	no	.	8.217	2.819	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
CYP2S1_LS002	chr19:41193441|41201231:+	CYP2S1	cytochrome P450 family 2 subfamily S member 1	protein coding gene	no	ENST00000597754.1	0.093	0.058	0.685	0.242(2321)	0.211(148)	0.043(739)	non tumor-specific	exon_skip	yes
PLA2G6_LS041	chr22:38143288|38169218:-	PLA2G6	phospholipase A2 group VI	protein coding gene	no	ENST00000430886.5	0.070	0.035	0.714	0.128(1228)	0.095(67)	0.144(2498)	non tumor-specific	exon_skip;mutex_exons	yes
ZNF546_LS010	chr19:39998332|40006096:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000600094.5;ENST00000600094.5	0.447	0.125	0.731	0.161(1544)	0.289(203)	0.267(4642)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZFC3H1_LS0029	chr12:71644318|71647749:-	ZFC3H1	zinc finger C3H1-type containing	protein coding gene	no	.	1.161	0.240	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
MAP3K6_LS004	chr1:27355469|27356026:-	MAP3K6	mitogen-activated protein kinase kinase kinase 6	protein coding gene	no	ENST00000486046.5;ENST00000486046.5	0.168	0.088	3.337	0.828(7931)	0.795(558)	0.837(14557)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF674_LS0028	chrX:46540571|46542073:-	ZNF674	zinc finger protein 674	protein coding gene	no	.	3.116	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SDR42E1_LS003	chr16:82000417|82000791:-	SDR42E1	short chain dehydrogenase/reductase family 42E, member 1	protein coding gene	no	ENST00000532128.5	0.109	0.119	0.987	0.169(1621)	0.226(159)	0.205(3570)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CIRBP_LS0045	chr19:1271429|1271451:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	.	7.589	2.769	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ATXN7L1_LS0023	chr7:105665288|105875812:-	ATXN7L1	ataxin 7 like 1	protein coding gene	no	.	0.816	0.686	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ATP8A1_LS030	chr4:42575699|42578260:-	ATP8A1	ATPase phospholipid transporting 8A1	protein coding gene	no	ENST00000381668.9;ENST00000264449.14	10.529	13.065	7.067	0.576(5516)	0.813(571)	0.938(16313)	non tumor-specific	nAS	yes
UN_GANAB_LS0006	chr11:62625031|62625340:+	GANAB	glucosidase II alpha subunit	protein coding gene	yes	.	2.190	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LRCH4_LS0034	chr7:100575032|100575132:+	LRCH4	leucine rich repeats and calponin homology domain containing 4	protein coding gene	no	.	2.060	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BX255925.3_LS0029	chr9:137218158|137218414:-	BX255925.3	-	protein coding gene	no	.	3.508	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01874_UP_LS0033	chr2:677402|735950:-	LINC01874	long intergenic non-protein coding RNA 1874	lncRNA gene	no	.	1.067	0.084	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_UBE2D2_LS0196	chr5:139546975|139547777:-	UBE2D2	ubiquitin conjugating enzyme E2 D2	protein coding gene	no	.	4.234	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDH4_LS0032	chr20:61434875|61434956:-	CDH4	cadherin 4	protein coding gene	yes	.	2.189	0.608	0.000	0.016(153)	0.01(7)	0(0)	non tumor-specific	nAS	no
NPR2_LS031	chr9:35809247|35809380:+	NPR2	NPR2 like, GATOR1 complex subunit	protein coding gene	no	ENST00000342694.6;ENST00000464810.5;ENST00000448821.5;ENST00000469249.1	22.886	16.773	63.151	0.977(9362)	0.989(694)	0.972(16887)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
MTDH_LS012	chr8:97691188|97713662:+	MTDH	metadherin	protein coding gene	yes	ENST00000519293.1	0.200	0.094	1.262	0.62(5945)	0.641(450)	0.578(10045)	non tumor-specific	exon_skip	yes
AC124944.1_LS002	chr3:195912181|195913495:+	AC124944.1	-	lncRNA gene	no	ENST00000448113.1	0.111	0.035	0.621	0.049(473)	0.028(20)	0.004(72)	non tumor-specific	nAS	yes
UN_ARRDC5_UP_LS0001	chr19:4936799|4972790:-	ARRDC5	arrestin domain containing 5	protein coding gene	no	.	2.229	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AOAH_LS0014	chr7:36528351|36530418:-	AOAH	acyloxyacyl hydrolase	protein coding gene	no	.	3.398	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ZNF821_LS021	chr16:71881434|71883211:-	ZNF821	zinc finger protein 821	protein coding gene	no	ENST00000568961.5;ENST00000562808.5;ENST00000568666.5;ENST00000563878.5;ENST00000562985.5	0.411	0.281	1.030	0.537(5146)	0.63(442)	0.541(9411)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LIMCH1_LS0007	chr4:41473195|41494536:+	LIMCH1	LIM and calponin homology domains 1	protein coding gene	no	.	1.382	0.702	0.000	0.047(448)	0.057(40)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TDO2_LS012	chr4:155905157|155907722:+	TDO2	tryptophan 2,3-dioxygenase	protein coding gene	no	ENST00000506072.5;ENST00000507590.5;ENST00000536354.2;ENST00000506072.5;ENST00000507590.5;ENST00000536354.2	12.601	65.141	1.447	0.639(6126)	0.417(293)	0.297(5168)	non tumor-specific	alt_3prime;exon_skip	yes
GRTP1_LS005	chr13:113324577|113344863:-	GRTP1	growth hormone regulated TBC protein 1	protein coding gene	no	ENST00000620217.4;ENST00000620217.4	0.057	0.037	0.672	0.562(5380)	0.604(424)	0.043(747)	non tumor-specific	alt_3prime;exon_skip	yes
CU633967.1_LS014	chr21:5585987|5614752:+	CU633967.1	-	lncRNA gene	no	ENST00000623914.3	0.034	0.017	0.646	0.173(1656)	0.212(149)	0.051(885)	non tumor-specific	nAS	yes
UN_SRMP1_UP_LS0005	chr20:47792452|47802671:+	SRMP1	SRM pseudogene 1	pseudogene	no	.	2.154	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PLCD1_LS013	chr3:38011445|38011544:-	PLCD1	phospholipase C delta 1	protein coding gene	yes	ENST00000461445.5;ENST00000463876.5;ENST00000334661.4;ENST00000479619.1	21.921	24.794	28.601	0.968(9274)	0.994(698)	0.978(17002)	non tumor-specific	alt_3prime	yes
CAMTA2_LS038	chr17:4985983|4987593:-	CAMTA2	calmodulin binding transcription activator 2	protein coding gene	no	ENST00000381311.9;ENST00000573004.5	0.036	0.058	0.753	0.282(2701)	0.49(344)	0.268(4652)	non tumor-specific	exon_skip	yes
UN_C22orf39_LS0027	chr22:19396872|19397992:-	C22orf39	chromosome 22 open reading frame 39	protein coding gene	no	.	2.543	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RABGEF1_LS0002	chr7:66682258|66685360:+	RABGEF1	RAB guanine nucleotide exchange factor 1	protein coding gene	no	.	5.593	2.675	0.000	0.728(6978)	0.566(397)	0(0)	non tumor-specific	nAS	no
CPA4_LS004	chr7:130298827|130299270:+	CPA4	carboxypeptidase A4	protein coding gene	no	ENST00000647977.1;ENST00000445470.6;ENST00000497388.5;ENST00000470542.5;ENST00000474254.5;ENST00000492072.5;ENST00000490117.5;ENST00000473956.5;ENST00000222482.9;ENST00000486598.1	5.616	2.067	3.614	0.271(2598)	0.218(153)	0.34(5917)	non tumor-specific	nAS	yes
UN_AC008109.1_LS0007	chr18:1541694|1566452:+	AC008109.1	-	lncRNA gene	no	.	1.552	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTA3_LS049	chr2:42723035|42753374:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	ENST00000405592.5;ENST00000406652.5;ENST00000405094.1;ENST00000467925.5;ENST00000405592.5;ENST00000406652.5;ENST00000405094.1;ENST00000467925.5;ENST00000405592.5;ENST00000406652.5;ENST00000405094.1;ENST00000467925.5	11.288	9.728	9.787	0.919(8803)	0.909(638)	0.96(16685)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MMP1_LS001	chr11:102790521|102790703:-	MMP1	matrix metallopeptidase 1	protein coding gene	no	ENST00000315274.6	50.916	6.865	1.594	0.635(6088)	0.514(361)	0.319(5540)	non tumor-specific	nAS	yes
UN_AC104506.1_UP_LS0001	chr1:100718415|100719774:+	AC104506.1	-	lncRNA gene	no	.	2.629	0.286	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC43A1_LS0021	chr11:57493599|57493993:-	SLC43A1	solute carrier family 43 member 1	protein coding gene	no	.	1.493	0.199	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATXN7L1_LS0005	chr7:105612789|105613862:-	ATXN7L1	ataxin 7 like 1	protein coding gene	no	.	1.272	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
MBTD1_LS018	chr17:51207005|51209314:-	MBTD1	mbt domain containing 1	protein coding gene	no	ENST00000405860.7;ENST00000376381.3	0.367	0.193	1.458	0.456(4365)	0.573(402)	0.692(12028)	non tumor-specific	exon_skip	yes
UN_SREBF2_LS0131	chr22:41906843|41906948:-	SREBF2	sterol regulatory element binding transcription factor 2	protein coding gene	no	.	5.825	0.398	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TOR1A_LS0015	chr9:129818920|129821769:-	TOR1A	torsin family 1 member A	protein coding gene	no	.	0.386	0.061	0.000	0.004(42)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SERPINB7_LS0006	chr18:63758994|63782355:+	SERPINB7	serpin family B member 7	protein coding gene	no	.	2.263	0.530	0.000	0.013(124)	0.014(10)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC135050.2_LS0001	chr16:31083809|31084558:-	AC135050.2	-	protein coding gene	no	.	11.087	0.508	0.000	0.009(86)	0.004(3)	0(0)	non tumor-specific	nAS	no
KRT86_LS006	chr12:52304171|52304932:+	KRT86	keratin 86	protein coding gene	no	ENST00000423955.6;ENST00000293525.5	1.294	0.467	0.978	0.253(2423)	0.185(130)	0.26(4515)	non tumor-specific	nAS	yes
UN_FTX_LS0105	chrX:74286170|74292169:-	FTX	FTX transcript, XIST regulator	lncRNA gene	no	.	5.929	0.053	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FGFR1OP_LS0045	chr6:167050315|167052319:+	FGFR1OP	centrosomal protein 43	protein coding gene	yes	.	0.756	0.019	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
SLC4A11_LS012	chr20:3230647|3230933:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	ENST00000647296.1;ENST00000647296.1	4.541	0.562	0.000	0.009(84)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
COL7A1_LS029	chr3:48571160|48571243:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000487017.5;ENST00000328333.12;ENST00000422991.1	18.085	3.658	15.091	0.688(6590)	0.464(326)	0.959(16673)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
TRIM75P_LS001	chr4:165053948|165058800:+	TRIM75P	tripartite motif containing 75, pseudogene	protein coding gene	no	ENST00000503032.2	1.109	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_LY96_LS0006	chr8:73995241|74004796:+	LY96	lymphocyte antigen 96	protein coding gene	no	.	0.865	0.027	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF207_LS024	chr1:6211118|6212231:+	RNF207	ring finger protein 207	protein coding gene	no	.;.	1.870	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
KMT2E_LS031	chr7:105102194|105105859:+	KMT2E	lysine methyltransferase 2E (inactive)	protein coding gene	no	.;.	4.379	0.812	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PER3_LS0039	chr1:7830161|7835766:+	PER3	period circadian regulator 3	protein coding gene	no	.	3.040	0.719	0.000	0.011(101)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_FKBP1A_LS0044	chr20:1370072|1371120:-	FKBP1A	FKBP prolyl isomerase 1A	protein coding gene	no	.	5.950	0.894	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
WDR77_LS001	chr1:111441383|111442025:-	WDR77	WD repeat domain 77	protein coding gene	no	.;.	33.248	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
DZIP1_LS007	chr13:95589932|95590279:-	DZIP1	DAZ interacting zinc finger protein 1	protein coding gene	no	ENST00000361396.6;ENST00000347108.7;ENST00000361156.7;ENST00000376829.6	23.016	17.478	21.704	0.615(5894)	0.772(542)	0.936(16264)	non tumor-specific	nAS	yes
UN_WDR60_LS0013	chr7:158863618|158869855:+	WDR60	dynein 2 intermediate chain 1	protein coding gene	no	.	0.985	0.079	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
TRPM4_LS024	chr19:49189091|49190696:+	TRPM4	transient receptor potential cation channel subfamily M member 4	protein coding gene	no	ENST00000595882.1	0.384	0.205	0.649	0.495(4739)	0.594(417)	0.017(304)	non tumor-specific	exon_skip	yes
ZNF462_LS024	chr9:106984409|106995520:+	ZNF462	zinc finger protein 462	protein coding gene	no	ENST00000482115.1	0.107	0.053	0.659	0.044(419)	0.051(36)	0.023(405)	non tumor-specific	nAS	yes
UN_METTL26_LS0046	chr16:635746|636141:+	METTL26	methyltransferase like 26	protein coding gene	no	.	2.027	0.513	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TEX13B_UP_LS0003	chrX:108078371|108477596:-	TEX13B	testis expressed 13B	protein coding gene	no	.	3.977	6.591	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ERO1B_LS0022	chr1:236253505|236262315:-	ERO1B	endoplasmic reticulum oxidoreductase 1 beta	protein coding gene	no	.	2.829	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VWC2_UP_LS0002	chr7:49579650|49584323:+	VWC2	von Willebrand factor C domain containing 2	protein coding gene	no	.	4.446	0.112	0.000	0.019(185)	0.001(1)	0(0)	non tumor-specific	nAS	no
DGKA_LS062	chr12:55952932|55953040:+	DGKA	diacylglycerol kinase alpha	protein coding gene	no	ENST00000331886.9;ENST00000394147.5;ENST00000551156.5;ENST00000402956.7;ENST00000551296.5;ENST00000552478.5;ENST00000549079.6;ENST00000551739.5;ENST00000550957.1	85.977	37.582	55.786	0.988(9465)	0.977(686)	0.979(17014)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AHCYP4_UP_LS0010	chr2:139394689|139411076:-	AHCYP4	adenosylhomocysteinase pseudogene 4	pseudogene	no	.	4.270	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
AL049651.2_LS002	chr20:23038305|23038934:+	AL049651.2	-	lncRNA gene	no	ENST00000419734.2	0.493	0.064	0.897	0.002(16)	0.001(1)	0.003(53)	non tumor-specific	nAS	yes
NCKAP1_LS002	chr2:182926905|182928117:-	NCKAP1	NCK associated protein 1	protein coding gene	no	ENST00000361354.8;ENST00000360982.2	172.469	108.814	187.597	0.974(9332)	0.997(700)	0.974(16928)	non tumor-specific	alt_3prime	yes
UN_AC025165.3_LS0002	chr12:57773073|57783110:+	AC025165.3	-	protein coding gene	no	.	2.292	0.125	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LRCH4_LS0067	chr7:100582785|100584690:+	LRCH4	leucine rich repeats and calponin homology domain containing 4	protein coding gene	no	.	1.183	0.150	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PFDN5_LS028	chr12:53296275|53297703:+	PFDN5	prefoldin subunit 5	protein coding gene	no	ENST00000550513.1	1.347	1.116	0.719	0.199(1903)	0.141(99)	0.206(3579)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC178_LS012	chr18:33215695|33224775:-	CCDC178	coiled-coil domain containing 178	protein coding gene	no	ENST00000300227.12	1.187	0.452	0.737	0.008(73)	0.054(38)	0.022(384)	non tumor-specific	exon_skip	yes
LCT_LS008	chr2:135804128|135804767:-	LCT	lactase	protein coding gene	no	ENST00000264162.6;ENST00000452974.1	4.560	2.173	0.771	0.006(57)	0.011(8)	0.033(575)	non tumor-specific	nAS	yes
UN_CEP170B_LS0073	chr14:104893135|104893479:+	CEP170B	centrosomal protein 170B	protein coding gene	no	.	8.610	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_MIR572_UP_LS0007	chr4:10759253|10808727:+	MIR572	microRNA 572	small non-coding RNA gene	no	.	4.349	0.309	0.000	0.003(29)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ZNF696_UP_LS0013	chr8:143283093|143288253:+	ZNF696	zinc finger protein 696	protein coding gene	no	.	1.039	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MARCH7_LS0023	chr2:159748485|159748590:-	MARCH7	membrane associated ring-CH-type finger 7	protein coding gene	no	.	1.037	0.364	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC005515.1_LS0004	chr19:39685652|39694464:+	AC005515.1	-	lncRNA gene	no	.	1.428	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01496_LS001	chrX:51502340|51505732:-	LINC01496	long intergenic non-protein coding RNA 1496	lncRNA gene	no	ENST00000448761.1	0.650	0.015	0.919	0.003(27)	0.001(1)	0.015(263)	non tumor-specific	nAS	yes
UN_GPR153_LS0041	chr1:6255014|6259419:-	GPR153	G protein-coupled receptor 153	protein coding gene	no	.	1.309	0.039	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CPSF2_LS0024	chr14:92164745|92168552:+	CPSF2	cleavage and polyadenylation specific factor 2	protein coding gene	no	.	1.014	0.141	0.000	0.009(89)	0.007(5)	0(0)	non tumor-specific	nAS	no
EXPH5_LS011	chr11:108541812|108593418:-	EXPH5	exophilin 5	protein coding gene	no	ENST00000265843.8;ENST00000525344.5	1.538	1.087	1.293	0.277(2658)	0.547(384)	0.318(5521)	non tumor-specific	exon_skip	yes
UN_SMC4_LS0020	chr3:160430743|160431012:+	SMC4	structural maintenance of chromosomes 4	protein coding gene	no	.	2.801	0.046	0.000	0.01(96)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CLEC4A_LS002	chr12:8123960|8129264:+	CLEC4A	C-type lectin domain family 4 member A	protein coding gene	no	ENST00000360500.5	0.269	0.208	0.806	0.247(2364)	0.281(197)	0.125(2175)	non tumor-specific	exon_skip	yes
UN_NBPF11_LS0003	chr1:148103912|148107711:-	NBPF11	NBPF member 11	protein coding gene	no	.	1.898	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ABLIM2_LS0087	chr4:8106637|8111801:-	ABLIM2	actin binding LIM protein family member 2	protein coding gene	no	.	0.927	0.144	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANKRD36_LS053	chr2:97204096|97204191:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	ENST00000461153.7;ENST00000420699.7	4.742	2.083	5.047	0.131(1259)	0.127(89)	0.923(16045)	non tumor-specific	exon_skip;intron_retention	yes
PRDM10_LS014	chr11:129929421|129931016:-	PRDM10	PR/SET domain 10	protein coding gene	yes	ENST00000358825.9;ENST00000423662.6;ENST00000526082.5	0.455	0.106	1.757	0.025(242)	0.006(4)	0.085(1476)	non tumor-specific	exon_skip	yes
UN_AC048383.1_UP_LS0006	chr15:70260027|70287212:+	AC048383.1	-	lncRNA gene	no	.	5.164	0.293	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ERG_LS0003	chr21:38392444|38403506:-	ERG	ETS transcription factor ERG	protein coding gene	yes	.	2.092	0.071	0.000	0.007(66)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
MED4_LS010	chr13:48090418|48094954:-	MED4	mediator complex subunit 4	protein coding gene	no	ENST00000258648.6	52.237	31.667	38.778	0.994(9527)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CATSPER1_LS011	chr11:66020954|66021094:-	CATSPER1	cation channel sperm associated 1	protein coding gene	no	ENST00000312106.5;ENST00000529244.1	4.124	1.299	1.373	0.326(3125)	0.191(134)	0.551(9574)	non tumor-specific	nAS	yes
UN_FNBP4_LS0003	chr11:47717512|47719934:-	FNBP4	formin binding protein 4	protein coding gene	no	.	12.268	0.891	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RNF185_LS0032	chr22:31185433|31187047:+	RNF185	ring finger protein 185	protein coding gene	no	.	3.038	0.205	0.000	0.007(70)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_HPD_LS0025	chr12:121856625|121856744:-	HPD	4-hydroxyphenylpyruvate dioxygenase	protein coding gene	no	.	1.657	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
POSTN_LS021	chr13:37571458|37574952:-	POSTN	periostin	protein coding gene	no	.;.	15.765	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_MUC5AC_LS0411	chr11:1191398|1191711:-	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	.	5.499	0.004	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC022387.1_LS001	chr10:63664772|63684922:+	AC022387.1	-	lncRNA gene	no	ENST00000444770.1	1.025	0.104	0.706	0.06(575)	0.037(26)	0.019(325)	non tumor-specific	nAS	yes
ZBTB42_LS001	chr14:104800700|104801181:+	ZBTB42	zinc finger and BTB domain containing 42	protein coding gene	no	ENST00000555360.1	0.354	0.216	0.810	0.354(3392)	0.4(281)	0.356(6184)	non tumor-specific	alt_3prime	yes
KMT2C_LS007	chr7:152139791|152145165:-	KMT2C	lysine methyltransferase 2C	protein coding gene	yes	.;.	1.447	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RF00019_UP_LS0471	chr15:30324289|30348095:+	RF00019	-	small non-coding RNA gene	no	.	2.744	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
TTLL5_LS022	chr14:75734050|75735195:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000557636.5;ENST00000298832.13;ENST00000555422.5;ENST00000554935.5;ENST00000554148.5	10.040	5.993	7.435	0.922(8830)	0.944(663)	0.964(16751)	non tumor-specific	nAS	yes
LGALS8_LS026	chr1:236540683|236541654:+	LGALS8	galectin 8	protein coding gene	no	ENST00000454943.6;ENST00000527974.5;ENST00000352231.6;ENST00000406509.7;ENST00000526589.5;ENST00000341872.10;ENST00000450372.6;ENST00000366584.8;ENST00000366583.6;ENST00000434231.6;ENST00000323938.10;ENST00000526634.5;ENST00000528259.5	20.446	14.611	29.701	0.993(9513)	0.996(699)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CELA3A_LS004	chr1:22005796|22006878:+	CELA3A	chymotrypsin like elastase 3A	protein coding gene	no	ENST00000290122.7	48.255	108.279	7.921	0.036(349)	0.037(26)	0.608(10568)	non tumor-specific	alt_3prime;exon_skip	yes
MYO1D_LS033	chr17:32778573|32780576:-	MYO1D	myosin ID	protein coding gene	no	ENST00000318217.9;ENST00000394649.8;ENST00000579584.5;ENST00000583621.1	38.294	49.621	20.725	0.906(8685)	0.979(687)	0.954(16585)	non tumor-specific	nAS	yes
AC012594.1_LS013	chr2:170344933|170350736:-	AC012594.1	-	lncRNA gene	no	ENST00000609666.5	0.137	0.000	0.654	0(2)	0(0)	0.001(24)	non tumor-specific	nAS	yes
UN_TRIM47_LS0036	chr17:75874639|75874670:+	TRIM47	tripartite motif containing 47	protein coding gene	no	.	4.756	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00856_LS0045	chr10:78333467|78334328:+	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	.	3.776	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDCD6_UP_LS0005	chr5:256455|264323:+	PDCD6	programmed cell death 6	protein coding gene	no	.	1.599	0.208	0.000	0.001(14)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SYT1_LS0037	chr12:79045387|79045761:+	SYT1	synaptotagmin 1	protein coding gene	yes	.	0.730	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TRAC_UP_LS0019	chr14:22489543|22546547:+	TRAC	T cell receptor alpha constant	no	no	.	1.902	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
VIPAS39_LS003	chr14:77429095|77429681:-	VIPAS39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein coding gene	no	ENST00000343765.6;ENST00000327028.8;ENST00000553888.5;ENST00000557658.5;ENST00000448935.6;ENST00000556412.4	33.951	18.687	24.875	0.991(9492)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
GUCY1A1_LS022	chr4:155668314|155696756:+	GUCY1A1	guanylate cyclase 1 soluble subunit alpha 1	protein coding gene	no	.;.	1.414	0.383	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNF217-AS1_LS0009	chr6:124941524|124945299:-	RNF217-AS1	RNF217 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.582	0.912	0.000	0.045(431)	0.093(65)	0(0)	non tumor-specific	nAS	no
UN_KIF12_LS0003	chr9:114092642|114092739:-	KIF12	kinesin family member 12	protein coding gene	no	.	8.751	1.087	0.000	0.019(186)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
DPY19L2P2_LS022	chr7:103243046|103254782:-	DPY19L2P2	DPY19L2 pseudogene 2	pseudogene	no	ENST00000439473.5;ENST00000438364.5;ENST00000411491.5;ENST00000312132.8;ENST00000435536.5	1.676	0.498	1.111	0.093(887)	0.033(23)	0.371(6451)	non tumor-specific	nAS	yes
TNRC18P3_LS007	chr7:57002191|57003297:+	TNRC18P3	trinucleotide repeat containing 18 pseudogene 3	pseudogene	no	ENST00000441896.1	1.859	0.532	0.641	0.008(73)	0.004(3)	0.01(182)	non tumor-specific	nAS	yes
CELP_LS004	chr9:133084642|133084840:+	CELP	carboxyl ester lipase pseudogene	pseudogene	no	ENST00000411440.5;ENST00000421286.4	22.473	34.392	1.121	0.197(1886)	0.198(139)	0.102(1766)	non tumor-specific	nAS	yes
SBSN_LS003	chr19:35524924|35526644:-	SBSN	suprabasin	protein coding gene	yes	ENST00000452271.6;ENST00000518157.1	43.111	248.031	3.084	0.353(3383)	0.187(131)	0.86(14945)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AP000696.1_UP_LS0004	chr21:36643006|36662866:-	AP000696.1	-	lncRNA gene	no	.	0.579	0.805	0.000	0.002(16)	0.004(3)	0(0)	non tumor-specific	nAS	no
UBA52_LS021	chr19:18574972|18575103:+	UBA52	ubiquitin A-52 residue ribosomal protein fusion product 1	protein coding gene	no	ENST00000594527.1	0.390	0.407	0.977	0.745(7135)	0.674(473)	0.584(10156)	non tumor-specific	alt_3prime;intron_retention	yes
GOLGB1_LS017	chr3:121699885|121702481:-	GOLGB1	golgin B1	protein coding gene	no	ENST00000340645.9;ENST00000393667.7;ENST00000614479.4;ENST00000482512.5;ENST00000494517.5;ENST00000489400.1	9.583	7.346	7.630	0.852(8162)	0.926(650)	0.926(16096)	non tumor-specific	exon_skip	yes
UN_PHACTR4_LS0058	chr1:28466535|28473554:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	3.231	1.080	0.000	0.004(38)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC068135.2_UP_LS0002	chr2:193286710|193301928:+	AC068135.2	-	lncRNA gene	no	.	4.842	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WDR60_LS0101	chr7:158952163|158952752:+	WDR60	dynein 2 intermediate chain 1	protein coding gene	no	.	0.612	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATP8B3_LS0008	chr19:1808579|1808620:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	.	4.402	0.478	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ATXN7L3B_LS0009	chr12:74538531|74539067:-	ATXN7L3B	ataxin 7 like 3B	protein coding gene	no	.	3.443	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
BRPF3_LS002	chr6:36197497|36200297:+	BRPF3	bromodomain and PHD finger containing 3	protein coding gene	no	ENST00000446974.1	0.160	0.058	0.646	0.26(2489)	0.302(212)	0.021(360)	non tumor-specific	alt_5prime	yes
LRP8_LS008	chr1:53249556|53250690:-	LRP8	LDL receptor related protein 8	protein coding gene	no	ENST00000306052.10;ENST00000480045.5;ENST00000347547.6	2.689	1.825	2.386	0.579(5543)	0.279(196)	0.751(13052)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC026316.4_LS010	chr3:170725619|170729356:+	AC026316.4	-	lncRNA gene	no	ENST00000480067.1	2.081	0.356	0.913	0.003(29)	0.003(2)	0.061(1060)	non tumor-specific	exon_skip	yes
UN_RPL9P6_UP_LS0012	chr14:82610121|82612939:-	RPL9P6	ribosomal protein L9 pseudogene 6	pseudogene	no	.	3.447	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC017002.6_LS0027	chr2:111495046|111539153:-	AC017002.6	-	lncRNA gene	no	.	2.637	0.127	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
RUNX1_LS029	chr21:35654875|35864285:-	RUNX1	RUNX family transcription factor 1	protein coding gene	yes	ENST00000475045.6	0.873	0.029	0.686	0.005(52)	0.001(1)	0.022(379)	non tumor-specific	exon_skip	yes
SLC43A2_LS010	chr17:1590948|1591269:-	SLC43A2	solute carrier family 43 member 2	protein coding gene	no	ENST00000301335.9;ENST00000571650.5;ENST00000412517.3;ENST00000572135.5;ENST00000574743.5;ENST00000572801.5;ENST00000574274.5	36.034	33.430	16.436	0.973(9321)	0.97(681)	0.973(16909)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRKAA2_LS009	chr1:56706218|56707475:+	PRKAA2	protein kinase AMP-activated catalytic subunit alpha 2	protein coding gene	yes	ENST00000371244.8;ENST00000610361.1	5.742	7.002	2.563	0.54(5178)	0.734(515)	0.762(13237)	non tumor-specific	nAS	yes
UN_AP001206.1_UP_LS0001	chr8:102020289|102125008:-	AP001206.1	-	pseudogene	no	.	0.936	0.461	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
CASQ1_LS007	chr1:160197614|160198677:+	CASQ1	calsequestrin 1	protein coding gene	no	ENST00000368078.7;ENST00000481081.1	6.841	8.614	4.456	0.241(2305)	0.281(197)	0.808(14037)	non tumor-specific	nAS	yes
UN_CNTN5_LS0041	chr11:99182635|99183164:-	CNTN5	contactin 5	protein coding gene	no	.	3.939	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC9_LS002	chr14:59919883|59930918:+	LRRC9	leucine rich repeat containing 9	protein coding gene	no	ENST00000454474.2	0.273	0.017	0.832	0.008(76)	0.003(2)	0(7)	non tumor-specific	nAS	yes
SVIL_LS013	chr10:29473687|29473838:-	SVIL	supervillin	protein coding gene	no	ENST00000460007.1	0.356	0.569	0.786	0.032(308)	0.057(40)	0.232(4031)	non tumor-specific	exon_skip	yes
UN_FXYD5_LS0002	chr19:35157111|35157426:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	.	10.431	0.490	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DANT1_LS0001	chrX:115842747|115842840:+	DANT1	DXZ4 associated non-coding transcript 1, proximal	lncRNA gene	no	.	4.306	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
LINC02163_LS004	chr5:104104287|104105360:+	LINC02163	long intergenic non-protein coding RNA 2163	lncRNA gene	no	ENST00000514769.1	1.335	0.101	0.760	0.175(1673)	0.007(5)	0.007(128)	non tumor-specific	nAS	yes
UN_EEF1A1P5_LS0330	chr9:133020476|133020587:+	EEF1A1P5	eukaryotic translation elongation factor 1 alpha 1 pseudogene 5	pseudogene	no	.	738.381	230.892	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00299_LS009	chr2:8294879|8296840:-	LINC00299	long intergenic non-protein coding RNA 299	lncRNA gene	no	ENST00000430192.5;ENST00000442956.1	2.626	0.206	1.549	0.013(124)	0.001(1)	0.369(6413)	non tumor-specific	nAS	yes
UN_TIMM23B_LS0002	chr10:49970535|49973012:+	TIMM23B	translocase of inner mitochondrial membrane 23 homolog B	protein coding gene	no	.	1.580	0.287	0.000	0.016(151)	0.009(6)	0(0)	non tumor-specific	nAS	no
EZH1_LS032	chr17:42724424|42727662:-	EZH1	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein coding gene	yes	ENST00000415827.6	0.196	0.555	1.537	0.493(4719)	0.674(473)	0.75(13039)	non tumor-specific	alt_5prime;exon_skip	yes
ASCC2_LS040	chr22:29825780|29834442:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000495681.5;ENST00000495681.5	0.015	0.014	0.645	0.356(3412)	0.356(250)	0.075(1300)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
FANCA_LS070	chr16:89799638|89803259:-	FANCA	FA complementation group A	protein coding gene	no	ENST00000389301.7;ENST00000568369.5;ENST00000567621.5;ENST00000566889.5;ENST00000389302.7;ENST00000563673.5;ENST00000534992.5;ENST00000543736.5	7.181	1.176	2.198	0.809(7749)	0.419(294)	0.773(13434)	non tumor-specific	exon_skip	yes
UN_PTPRJ_LS0070	chr11:48110076|48112792:+	PTPRJ	protein tyrosine phosphatase receptor type J	protein coding gene	yes	.	1.341	0.153	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LIMK1_LS018	chr7:74115958|74120583:+	LIMK1	LIM domain kinase 1	protein coding gene	no	ENST00000418310.5;ENST00000336180.6;ENST00000435201.5;ENST00000538333.3;ENST00000476792.1	81.738	30.335	26.670	0.995(9529)	0.989(694)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_NACC1_LS0064	chr19:13139081|13139487:+	NACC1	nucleus accumbens associated 1	protein coding gene	no	.	8.123	0.127	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FP236383.2_UP_LS0526	chr21:8401961|8446086:-	FP236383.2	-	lncRNA gene	no	.	85.504	0.486	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNFT1-DT_LS001	chr17:59965188|59966403:+	RNFT1-DT	RNFT1 divergent transcript	lncRNA gene	no	ENST00000593015.5;ENST00000586209.1	1.585	1.389	2.851	0.884(8474)	0.957(672)	0.832(14463)	non tumor-specific	exon_skip	yes
HNRNPA2B1_LS013	chr7:26192577|26193575:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	.;.;.	104.420	37.351	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CSNK2A1_LS027	chr20:505229|527933:-	CSNK2A1	casein kinase 2 alpha 2	protein coding gene	yes	ENST00000646477.1;ENST00000460062.7	1.792	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	exon_skip	yes
TARS_LS020	chr5:33448731|33454982:+	TARS	threonyl-tRNA synthetase 1	protein coding gene	no	ENST00000507716.5	0.879	0.607	0.737	0.764(7318)	0.789(554)	0.283(4924)	non tumor-specific	alt_3prime	yes
NOL3_LS003	chr16:67170574|67173887:+	NOL3	nucleolar protein 3	protein coding gene	no	.;.	0.853	0.637	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01301_LS0019	chr8:60464750|60468868:-	LINC01301	long intergenic non-protein coding RNA 1301	lncRNA gene	no	.	4.384	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
GRIN2B_LS015	chr12:13980356|13981916:-	GRIN2B	glutamate ionotropic receptor NMDA type subunit 2B	protein coding gene	no	ENST00000627535.2	0.107	0.011	0.887	0.012(114)	0.009(6)	0.031(538)	non tumor-specific	nAS	yes
STRBP_LS031	chr9:123184298|123212585:-	STRBP	spermatid perinuclear RNA binding protein	protein coding gene	no	ENST00000479114.2	0.650	0.180	0.789	0.047(450)	0.048(34)	0.187(3242)	non tumor-specific	exon_skip	yes
CD72_LS002	chr9:35610753|35611804:-	CD72	CD72 molecule	protein coding gene	no	ENST00000396757.5;ENST00000259633.8;ENST00000612238.4;ENST00000490239.5	21.277	3.654	5.385	0.735(7038)	0.644(452)	0.93(16162)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC245060.5_UP_LS0180	chr22:22377645|22698377:-	AC245060.5	-	lncRNA gene	no	.	19.134	4.632	0.000	0.025(236)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_KRT9_UP_LS0023	chr17:41586438|41612234:-	KRT9	keratin 9	protein coding gene	no	.	514.664	132.608	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
CORO1A_LS008	chr16:30184964|30185209:+	CORO1A	coronin 1A	protein coding gene	no	ENST00000569970.1	0.011	0.015	0.859	0.69(6611)	0.631(443)	0.077(1334)	non tumor-specific	alt_5prime	yes
CELF4_LS007	chr18:37253938|37259181:-	CELF4	CUGBP Elav-like family member 4	protein coding gene	no	ENST00000591287.5;ENST00000420428.6;ENST00000590112.5;ENST00000601019.5;ENST00000361795.9;ENST00000603232.6;ENST00000591282.5;ENST00000591287.5;ENST00000420428.6;ENST00000590112.5;ENST00000601019.5;ENST00000361795.9;ENST00000603232.6;ENST00000591282.5	1.458	2.516	10.566	0.082(790)	0.019(13)	0.256(4457)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
IGF2BP2_LS018	chr3:185692762|185693177:-	IGF2BP2	insulin like growth factor 2 mRNA binding protein 2	protein coding gene	no	ENST00000461957.5	0.331	0.104	1.083	0.358(3432)	0.295(207)	0.355(6164)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_HOXB3_LS0051	chr17:48574014|48574176:-	HOXB3	homeobox B3	protein coding gene	no	.	1.524	0.528	0.000	0.011(106)	0.016(11)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NRCAM_LS017	chr7:108160492|108176430:-	NRCAM	neuronal cell adhesion molecule	protein coding gene	yes	ENST00000351718.8;ENST00000415105.5;ENST00000465585.1;ENST00000351718.8;ENST00000415105.5;ENST00000465585.1	26.395	7.161	3.595	0.633(6069)	0.625(439)	0.68(11817)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC010507.1_LS0057	chr19:199272|199710:-	AC010507.1	-	pseudogene	no	.	3.752	0.280	0.000	0.011(109)	0.004(3)	0(0)	non tumor-specific	nAS	no
P4HB_LS033	chr17:81859387|81860347:-	P4HB	prolyl 4-hydroxylase subunit beta	protein coding gene	no	ENST00000575069.5;ENST00000576380.5	0.568	11.026	1.622	0.644(6174)	0.721(506)	0.798(13874)	non tumor-specific	alt_5prime	yes
SIGIRR_LS022	chr11:408893|409860:-	SIGIRR	single Ig and TIR domain containing	protein coding gene	no	ENST00000528116.5	0.112	0.217	0.925	0.344(3298)	0.296(208)	0.336(5836)	non tumor-specific	alt_5prime;exon_skip	yes
PGD_LS002	chr1:10399125|10399629:+	PGD	phosphogluconate dehydrogenase	protein coding gene	no	ENST00000487775.1;ENST00000477958.5;ENST00000270776.12;ENST00000483936.5	105.007	71.906	52.007	0.893(8558)	0.902(633)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_GATA6-AS1_LS0006	chr18:22169186|22169574:+	GATA6-AS1	GATA6 antisense RNA 1 (head to head)	lncRNA gene	no	.	1.278	0.078	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
MFSD14A_LS008	chr1:100069685|100077165:+	MFSD14A	major facilitator superfamily domain containing 14A	protein coding gene	no	ENST00000370152.7	68.160	48.407	33.438	0.983(9417)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip	yes
LAMA1_LS011	chr18:6958662|6959341:-	LAMA1	laminin subunit alpha 1	protein coding gene	no	ENST00000389658.3;ENST00000488064.5;ENST00000579014.5;ENST00000488089.1;ENST00000638611.1	9.245	2.687	3.049	0.637(6099)	0.607(426)	0.672(11684)	non tumor-specific	nAS	yes
CHST4_LS004	chr16:71526495|71536660:+	CHST4	carbohydrate sulfotransferase 4	protein coding gene	no	ENST00000539698.3	0.780	0.433	1.054	0.236(2263)	0.291(204)	0.113(1964)	non tumor-specific	alt_3prime;alt_5prime	yes
OTOGL_LS052	chr12:80356914|80358248:+	OTOGL	otogelin like	protein coding gene	no	ENST00000646859.1;ENST00000547103.6;ENST00000458043.6;ENST00000298820.7;ENST00000546620.5;ENST00000551340.5	2.013	0.819	1.265	0.097(927)	0.14(98)	0.438(7616)	non tumor-specific	nAS	yes
UN_EPPK1_LS0009	chr8:143858973|143865373:-	EPPK1	epiplakin 1	protein coding gene	no	.	2.139	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
GPD1L_LS008	chr3:32140366|32146622:+	GPD1L	glycerol-3-phosphate dehydrogenase 1 like	protein coding gene	no	ENST00000282541.9;ENST00000428684.1;ENST00000425459.5;ENST00000431009.1	23.708	38.170	21.294	0.938(8991)	0.952(668)	0.966(16789)	non tumor-specific	nAS	yes
BEST1_LS027	chr11:61962893|61964104:+	BEST1	bestrophin 1	protein coding gene	no	ENST00000378043.8;ENST00000524877.5;ENST00000524926.5	1.948	6.467	5.178	0.53(5075)	0.53(372)	0.916(15929)	non tumor-specific	intron_retention	yes
UN_TAOK1_LS0048	chr17:29534300|29535579:+	TAOK1	TAO kinase 1	protein coding gene	no	.	0.351	0.095	0.000	0.011(105)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
AHNAK_LS057	chr11:62522230|62525345:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.;.	6.182	2.885	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
AL354761.1_LS003	chr9:135615498|135616587:+	AL354761.1	-	protein coding gene	no	ENST00000637501.1;ENST00000430816.2	4.548	1.839	6.761	0.004(41)	0.004(3)	0.113(1959)	non tumor-specific	nAS	yes
UN_PTPRF_LS0011	chr1:43548099|43553492:+	PTPRF	protein tyrosine phosphatase receptor type F	protein coding gene	no	.	3.121	0.363	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
C6orf10_LS033	chr6:32368814|32369897:-	C6orf10	testis expressed basic protein 1	protein coding gene	no	ENST00000442822.6;ENST00000447241.6;ENST00000375015.8;ENST00000533191.5;ENST00000612031.4;ENST00000527965.5;ENST00000375007.8;ENST00000617061.4;ENST00000532023.5;ENST00000534588.1	2.453	0.452	0.644	0.009(87)	0.001(1)	0.008(143)	non tumor-specific	nAS	yes
UN_GNAL_LS0035	chr18:11877799|11878306:-	GNAL	G protein subunit alpha L	protein coding gene	no	.	1.344	0.269	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SLC9A1_LS0082	chr1:27114286|27135862:-	SLC9A1	solute carrier family 9 member A1	protein coding gene	no	.	1.315	0.540	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_NINL_LS0104	chr20:25526598|25569416:-	NINL	ninein like	protein coding gene	yes	.	1.294	0.333	0.000	0.006(59)	0.006(4)	0(0)	non tumor-specific	nAS	no
SAMD14_LS003	chr17:50114079|50114187:-	SAMD14	sterile alpha motif domain containing 14	protein coding gene	no	ENST00000330175.8;ENST00000285206.12;ENST00000508892.5;ENST00000503131.1	9.214	6.759	4.665	0.744(7131)	0.658(462)	0.913(15862)	non tumor-specific	nAS	yes
CRIM1_LS011	chr2:36396787|36441258:+	CRIM1	cysteine rich transmembrane BMP regulator 1	protein coding gene	no	ENST00000280527.6	35.343	56.406	22.700	0.899(8610)	0.983(690)	0.949(16490)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MARCH6_LS0048	chr5:10419511|10423735:+	MARCH6	membrane associated ring-CH-type finger 6	protein coding gene	no	.	1.192	0.308	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MUC2_LS0083	chr11:1096662|1096978:-	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	.	7.203	9.965	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	nAS	no
THUMPD3_LS025	chr3:9384335|9384524:+	THUMPD3	THUMP domain containing 3	protein coding gene	no	ENST00000452837.6;ENST00000345094.7;ENST00000515662.6;ENST00000416603.1;ENST00000464045.1	50.156	26.200	37.961	0.927(8886)	0.932(654)	0.979(17016)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_NELFA_LS0008	chr4:1983519|1983596:-	NELFA	negative elongation factor complex member A	protein coding gene	no	.	6.792	0.711	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
MFAP3L_LS003	chr4:169992309|170003671:-	MFAP3L	microfibril associated protein 3 like	protein coding gene	no	ENST00000393704.3	0.004	0.001	0.720	0.273(2616)	0.39(274)	0.015(266)	non tumor-specific	nAS	yes
UN_CLTB_LS0001	chr5:176392575|176392614:+	CLTB	clathrin light chain B	protein coding gene	no	.	4.790	1.340	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PDLIM1_LS0005	chr10:95237708|95238599:+	PDLIM1	PDZ and LIM domain 1	protein coding gene	no	.	2.147	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGEF1_LS0025	chr19:41896860|41896935:-	ARHGEF1	Rho guanine nucleotide exchange factor 1	protein coding gene	yes	.	12.966	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
SYNE1_LS035	chr6:152215060|152218257:-	SYNE1	spectrin repeat containing nuclear envelope protein 1	protein coding gene	no	ENST00000367255.9;ENST00000341594.9;ENST00000367257.8;ENST00000423061.5;ENST00000367251.7;ENST00000409694.6;ENST00000367256.9	9.705	19.034	28.740	0.777(7442)	0.959(673)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_GPR35_LS0011	chr2:240613173|240616388:+	GPR35	G protein-coupled receptor 35	protein coding gene	no	.	1.309	0.713	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	nAS	no
GPS2_LS008	chr17:7313721|7314080:-	GPS2	G protein pathway suppressor 2	protein coding gene	no	ENST00000572707.5	0.268	0.189	0.962	0.68(6512)	0.698(490)	0.485(8436)	non tumor-specific	alt_3prime;intron_retention	yes
UN_PTPA_LS0057	chr9:129147574|129148020:+	PTPA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	36.582	3.478	0.000	0.013(120)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
ZMIZ1_LS007	chr10:79216274|79277181:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	ENST00000334512.9;ENST00000611351.1	34.241	31.944	20.188	0.914(8755)	0.974(684)	0.972(16897)	non tumor-specific	exon_skip	yes
NLRP11_LS004	chr19:55792471|55796080:-	NLRP11	NLR family pyrin domain containing 11	protein coding gene	no	ENST00000589824.6;ENST00000592953.5;ENST00000589093.5;ENST00000590409.5;ENST00000593244.5	5.794	0.525	0.782	0.088(842)	0.048(34)	0.073(1275)	non tumor-specific	nAS	yes
UN_SEC24B-AS1_LS0020	chr4:109432104|109433734:-	SEC24B-AS1	SEC24B antisense RNA 1	lncRNA gene	no	.	1.095	0.225	0.000	0.03(283)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_COL1A1_LS0520	chr17:50186900|50190350:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	1.773	0.295	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATR_LS037	chr3:142535205|142536108:-	ATR	serpin family A member 2 (gene/pseudogene)	protein coding gene	yes	ENST00000350721.8	8.512	5.193	4.441	0.835(8004)	0.889(624)	0.918(15956)	non tumor-specific	nAS	yes
UN_SLC2A1_LS0087	chr1:42927730|42927753:+	SLC2A1	solute carrier family 2 member 1	protein coding gene	no	.	6.188	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
PITRM1_LS029	chr10:3158153|3158914:-	PITRM1	pitrilysin metallopeptidase 1	protein coding gene	no	ENST00000224949.8;ENST00000380989.6;ENST00000451104.6;ENST00000430362.1	70.442	50.861	62.943	0.988(9463)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
FAM160A2_LS008	chr11:6218763|6218971:-	FAM160A2	family with sequence similarity 160 member A2	protein coding gene	no	ENST00000449352.6;ENST00000265978.8;ENST00000524416.1	29.678	24.063	40.678	0.967(9262)	0.99(695)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_AL449266.1_LS0015	chr1:108934942|108936244:-	AL449266.1	-	protein coding gene	no	.	1.490	1.093	0.000	0.136(1302)	0.137(96)	0(0)	non tumor-specific	nAS	no
UN_AC004448.1_UP_LS0002	chr17:19415620|19446190:+	AC004448.1	-	lncRNA gene	no	.	17.027	0.498	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
CCL15-CCL14_LS002	chr17:35984452|35985748:-	CCL15-CCL14	CCL15-CCL14 readthrough (NMD candidate)	protein coding gene	no	ENST00000610751.4	0.284	3.489	4.445	0.357(3420)	0.896(629)	0.683(11874)	non tumor-specific	exon_skip	yes
FERMT2_LS031	chr14:52950577|52950828:-	FERMT2	fermitin family member 2	protein coding gene	no	ENST00000395631.6;ENST00000557562.1	0.031	0.054	0.764	0.34(3260)	0.567(398)	0.26(4528)	non tumor-specific	alt_5prime	yes
CFTR_LS040	chr7:117665564|117666908:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000003084.10;ENST00000426809.5;ENST00000649781.1;ENST00000647720.1	38.845	33.794	2.134	0.33(3162)	0.585(411)	0.349(6069)	non tumor-specific	alt_3prime	yes
AL139161.1_LS001	chr1:235958003|235971761:-	AL139161.1	-	lncRNA gene	no	ENST00000443207.1	0.485	0.394	0.980	0.289(2772)	0.288(202)	0.401(6973)	non tumor-specific	nAS	yes
UN_SYNPR_LS0042	chr3:63550051|63560639:-	SYNPR	synaptoporin	protein coding gene	no	.	2.038	0.204	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
ASB3_LS013	chr2:53716743|53750783:-	ASB3	ankyrin repeat and SOCS box containing 3	protein coding gene	no	ENST00000470916.5	0.362	0.197	0.705	0.441(4225)	0.427(300)	0.191(3318)	non tumor-specific	nAS	yes
UN_MIR6724-4_UP_LS0272	chr21:8218622|8401519:+	MIR6724-4	microRNA 6724-4	small non-coding RNA gene	no	.	844.501	181.668	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ATP10B_LS0025	chr5:160688094|160693510:-	ATP10B	ATPase phospholipid transporting 10B (putative)	protein coding gene	no	.	1.275	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CD3EAP_LS001	chr19:45406718|45407094:+	CD3EAP	RNA polymerase I subunit G	protein coding gene	no	ENST00000309424.7	0.689	0.452	2.890	0.939(8997)	0.959(673)	0.881(15320)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SYNE2_LS139	chr14:64214470|64216248:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000394768.6;ENST00000555612.5;ENST00000553289.5;ENST00000555022.5;ENST00000554805.6;ENST00000557084.1;ENST00000357395.7;ENST00000344113.8;ENST00000554584.5;ENST00000394768.6;ENST00000555612.5;ENST00000553289.5;ENST00000555022.5;ENST00000554805.6;ENST00000557084.1	28.314	25.416	6.566	0.972(9311)	0.993(697)	0.883(15345)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
HERC2P2_LS033	chr15:22576205|22577159:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	ENST00000618651.1	1.020	0.246	1.161	0.111(1066)	0.06(42)	0.49(8524)	non tumor-specific	nAS	yes
UN_GFPT1_UP_LS0002	chr2:69432005|69443006:-	GFPT1	glutamine--fructose-6-phosphate transaminase 1	protein coding gene	no	.	4.709	0.926	0.000	0.007(66)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SEC14L1_LS0168	chr17:77216348|77216401:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	8.919	1.849	0.000	0.01(94)	0.007(5)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
COL27A1_LS063	chr9:114284777|114288455:+	COL27A1	collagen type XXVII alpha 1 chain	protein coding gene	no	ENST00000356083.7;ENST00000494090.6	15.425	7.770	20.214	0.772(7393)	0.839(589)	0.938(16310)	non tumor-specific	alt_3prime	yes
UN_PSMC1P7_UP_LS0001	chr3:161346950|161429229:-	PSMC1P7	proteasome 26S subunit, ATPase 1 pseudogene 7	pseudogene	no	.	1.701	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
GGT4P_LS006	chr13:18258619|18259144:-	GGT4P	gamma-glutamyltransferase 4 pseudogene	pseudogene	no	ENST00000623672.1	1.581	1.102	1.036	0.177(1700)	0.245(172)	0.179(3103)	non tumor-specific	nAS	yes
UN_AL392088.2_UP_LS0006	chr1:108531401|108536165:-	AL392088.2	-	pseudogene	no	.	3.232	0.170	0.000	0.045(433)	0.001(1)	0(0)	non tumor-specific	nAS	no
NDRG4_LS052	chr16:58502147|58503798:+	NDRG4	NDRG family member 4	protein coding gene	yes	ENST00000568464.5;ENST00000562731.5	0.060	0.003	1.040	0.117(1123)	0.027(19)	0.116(2018)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CEP72_LS023	chr5:666099|666864:+	CEP72	centrosomal protein 72	protein coding gene	no	ENST00000514507.1	1.262	0.278	1.012	0.394(3778)	0.154(108)	0.478(8316)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SMOC1_LS0019	chr14:69885507|69885548:+	SMOC1	SPARC related modular calcium binding 1	protein coding gene	no	.	31.102	0.438	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
OTOG_LS041	chr11:17612330|17612620:+	OTOG	otogelin	protein coding gene	no	ENST00000399391.6;ENST00000399397.5;ENST00000342528.2	3.533	0.000	1.127	0.008(81)	0(0)	0.018(313)	non tumor-specific	intron_retention	yes
UN_RF00019_UP_LS0913	chr16:18340576|18380687:+	RF00019	-	small non-coding RNA gene	no	.	3.822	0.630	0.000	0.014(137)	0.006(4)	0(0)	non tumor-specific	nAS	no
FADS2_LS025	chr11:61848413|61857011:+	FADS2	fatty acid desaturase 2	protein coding gene	no	.;.	27.170	7.926	0.000	0.022(209)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MED14_LS024	chrX:40703569|40709348:-	MED14	mediator complex subunit 14	protein coding gene	no	ENST00000324817.5	22.469	13.236	15.157	0.896(8585)	0.964(677)	0.973(16913)	non tumor-specific	alt_3prime;exon_skip	yes
STRIP2_LS010	chr7:129458450|129458712:+	STRIP2	striatin interacting protein 2	protein coding gene	no	ENST00000249344.6;ENST00000435494.2;ENST00000465033.1	3.829	2.728	2.320	0.649(6217)	0.453(318)	0.717(12465)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CYP4F11_LS0013	chr19:15934715|15934767:+	CYP4F11	cytochrome P450 family 4 subfamily F member 11	protein coding gene	no	.	3.237	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
EIF3K_LS001	chr19:38619223|38620337:+	EIF3K	eukaryotic translation initiation factor 3 subunit K	protein coding gene	no	ENST00000593149.5	0.055	0.149	2.424	0.881(8438)	0.933(655)	0.889(15444)	non tumor-specific	alt_5prime;exon_skip	yes
UN_MUC5AC_LS0439	chr11:1191806|1191879:-	MUC5AC	mucin 5AC, oligomeric mucus/gel-forming	protein coding gene	no	.	3.326	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
LRRC39_LS009	chr1:100158367|100159259:-	LRRC39	leucine rich repeat containing 39	protein coding gene	no	ENST00000620882.4;ENST00000342895.7;ENST00000370137.5;ENST00000370138.1	4.643	1.283	4.823	0.288(2762)	0.142(100)	0.928(16123)	non tumor-specific	exon_skip	yes
UN_CCDC12_LS0028	chr3:46978297|46979300:-	CCDC12	coiled-coil domain containing 12	protein coding gene	no	.	1.672	0.486	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LINC00649_LS0016	chr21:33951354|33953336:+	LINC00649	long intergenic non-protein coding RNA 649	lncRNA gene	no	.	2.280	0.322	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TXN2_LS0058	chr22:36468713|36476733:-	TXN2	thioredoxin 2	protein coding gene	no	.	1.241	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_TRGC2_LS0001	chr7:38240101|38242428:-	TRGC2	T cell receptor gamma constant 2	no	no	.	9.169	1.956	0.000	0.024(230)	0.027(19)	0(0)	non tumor-specific	nAS	no
EDIL3_LS003	chr5:84048272|84060300:-	EDIL3	EGF like repeats and discoidin domains 3	protein coding gene	no	ENST00000510271.1	0.399	0.166	0.911	0.231(2212)	0.37(260)	0.254(4413)	non tumor-specific	nAS	yes
LINC02241_LS001	chr5:20611985|20660712:+	LINC02241	long intergenic non-protein coding RNA 2241	lncRNA gene	no	ENST00000502427.5;ENST00000514876.5	0.300	0.000	0.656	0.003(30)	0(0)	0.003(57)	non tumor-specific	nAS	yes
AF240627.1_LS001	chr21:18614565|18640689:+	AF240627.1	-	lncRNA gene	no	ENST00000416002.1	0.013	0.000	0.806	0(2)	0(0)	0(7)	non tumor-specific	nAS	yes
MUC4_LS331	chr3:195785017|195785450:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	6.268	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SNRNP35_LS0011	chr12:123458216|123465480:+	SNRNP35	small nuclear ribonucleoprotein U11/U12 subunit 35	protein coding gene	no	.	2.035	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF761_LS0192	chr19:53456600|53456685:-	ZNF761	zinc finger protein 761	protein coding gene	no	.	2.367	0.920	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00836_LS007	chr10:25668330|25682521:+	LINC00836	long intergenic non-protein coding RNA 836	lncRNA gene	no	ENST00000628620.1	8.563	0.031	0.989	0.04(388)	0.001(1)	0.044(763)	non tumor-specific	nAS	yes
UN_PATJ_LS0093	chr1:62117377|62121181:+	PATJ	PATJ crumbs cell polarity complex component	protein coding gene	no	.	2.928	0.224	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_ZNF462_LS0007	chr9:106866191|106923354:+	ZNF462	zinc finger protein 462	protein coding gene	no	.	3.764	0.642	0.000	0.051(484)	0.058(41)	0(0)	non tumor-specific	nAS	no
AC002472.1_LS002	chr22:21043055|21043907:+	AC002472.1	-	lncRNA gene	no	ENST00000450652.1	0.481	0.125	0.925	0.004(36)	0.001(1)	0.074(1291)	non tumor-specific	nAS	yes
UN_IGF2R_LS0040	chr6:160091131|160091308:+	IGF2R	insulin like growth factor 2 receptor	protein coding gene	yes	.	6.796	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SCN1B_LS009	chr19:35039706|35039797:+	SCN1B	sodium voltage-gated channel beta subunit 1	protein coding gene	no	ENST00000262631.10;ENST00000595652.5;ENST00000596348.2;ENST00000602150.2	21.990	15.524	31.334	0.898(8607)	0.917(644)	0.976(16970)	non tumor-specific	intron_retention	yes
ITGB6_LS006	chr2:160123888|160126379:-	ITGB6	integrin subunit beta 6	protein coding gene	no	ENST00000283249.6;ENST00000620391.4;ENST00000409583.5;ENST00000428609.6;ENST00000409872.1	27.127	38.546	4.496	0.663(6353)	0.838(588)	0.39(6780)	non tumor-specific	exon_skip	yes
ARHGDIG_LS010	chr16:282373|282467:+	ARHGDIG	Rho GDP dissociation inhibitor gamma	protein coding gene	no	ENST00000219409.7;ENST00000414650.1;ENST00000477621.1	13.904	37.054	5.717	0.344(3297)	0.275(193)	0.823(14310)	non tumor-specific	alt_5prime	yes
MRLN_LS005	chr10:59739095|59744809:-	MRLN	myoregulin	protein coding gene	no	ENST00000599605.1	0.003	0.000	0.967	0.006(53)	0.02(14)	0.001(11)	non tumor-specific	nAS	yes
ARRDC1_LS024	chr9:137614898|137615074:+	ARRDC1	arrestin domain containing 1	protein coding gene	no	ENST00000475658.1;ENST00000475658.1	0.080	0.197	1.326	0.791(7576)	0.822(577)	0.674(11710)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_TMEM8B_LS0017	chr9:35833395|35833729:-	TMEM8B	transmembrane protein 8B	protein coding gene	no	.	2.547	0.701	0.000	0.004(35)	0.007(5)	0(0)	non tumor-specific	nAS	no
ZFHX2_LS005	chr14:23527804|23529710:-	ZFHX2	zinc finger homeobox 2	protein coding gene	no	ENST00000419474.4	2.009	1.071	1.077	0.261(2505)	0.356(250)	0.446(7749)	non tumor-specific	nAS	yes
VPS33B_LS030	chr15:91017024|91017805:-	VPS33B	VPS33B late endosome and lysosome associated	protein coding gene	no	ENST00000333371.7;ENST00000554264.5	15.983	10.622	11.932	0.968(9272)	0.984(691)	0.975(16952)	non tumor-specific	alt_3prime;exon_skip	yes
HAUS2_LS010	chr15:42560870|42561275:+	HAUS2	HAUS augmin like complex subunit 2	protein coding gene	no	ENST00000562398.5	0.135	0.099	1.133	0.676(6477)	0.695(488)	0.635(11041)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FASN_LS0205	chr17:82085767|82085830:+	FASN	fatty acid synthase	protein coding gene	yes	.	7.276	0.539	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANKRD35_LS007	chr1:145875006|145876140:-	ANKRD35	ankyrin repeat domain 35	protein coding gene	no	ENST00000355594.8;ENST00000544626.2	2.859	4.759	1.799	0.203(1946)	0.147(103)	0.376(6531)	non tumor-specific	nAS	yes
MGST3_LS001	chr1:165631292|165635727:+	MGST3	microsomal glutathione S-transferase 3	protein coding gene	no	ENST00000367884.6	0.001	0.000	0.637	0.021(205)	0.021(15)	0.013(221)	non tumor-specific	alt_5prime;exon_skip	yes
CFAP53_LS006	chr18:50261237|50261990:-	CFAP53	cilia and flagella associated protein 53	protein coding gene	no	ENST00000398545.4	3.067	2.294	1.547	0.466(4460)	0.581(408)	0.712(12384)	non tumor-specific	nAS	yes
UN_TUBB_LS0183	chr6:30723864|30723968:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	34.457	2.254	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RTL9_LS0008	chrX:110426803|110440115:-	RTL9	retrotransposon Gag like 9	protein coding gene	no	.	1.913	2.427	0.000	0.003(24)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DCP2_LS011	chr5:113004077|113007938:+	DCP2	decapping mRNA 2	protein coding gene	no	ENST00000513585.5;ENST00000389063.2;ENST00000508359.1	8.748	4.623	3.606	0.929(8905)	0.954(670)	0.929(16145)	non tumor-specific	exon_skip	yes
UN_SRP14_LS0004	chr15:40036337|40036395:+	SRP14	signal recognition particle 14	protein coding gene	no	.	24.911	9.829	0.000	0.055(528)	0.07(49)	0(0)	non tumor-specific	nAS	no
ZFYVE28_LS025	chr4:2354073|2418285:-	ZFYVE28	zinc finger FYVE-type containing 28	protein coding gene	no	ENST00000290974.6;ENST00000511071.5;ENST00000503000.1	0.603	1.006	2.629	0.657(6294)	0.748(525)	0.862(14988)	non tumor-specific	exon_skip	yes
UN_PAX8_LS0175	chr2:113238212|113239743:+	PAX8	paired box 8	protein coding gene	yes	.	3.888	1.819	0.000	0.146(1398)	0.178(125)	0(0)	non tumor-specific	nAS	no
CACNA1S_LS004	chr1:201041589|201043281:-	CACNA1S	calcium voltage-gated channel subunit alpha1 S	protein coding gene	no	ENST00000367338.7;ENST00000362061.3	9.566	28.232	1.208	0.028(265)	0.067(47)	0.263(4579)	non tumor-specific	nAS	yes
UN_PYY2_UP_LS0010	chr17:28223928|28226522:+	PYY2	peptide YY 2 (pseudogene)	pseudogene	no	.	3.710	0.346	0.000	0.016(153)	0.001(1)	0(0)	non tumor-specific	nAS	no
SH3GLB1_LS005	chr1:86722673|86724313:+	SH3GLB1	SH3 domain containing GRB2 like, endophilin B1	protein coding gene	yes	ENST00000616170.4;ENST00000535010.5;ENST00000370558.8;ENST00000482504.1	147.946	94.325	79.350	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
LINC01537_LS001	chr11:72570907|72571028:+	LINC01537	long intergenic non-protein coding RNA 1537	lncRNA gene	no	ENST00000450804.3	0.693	0.137	0.638	0.058(553)	0.036(25)	0.04(687)	non tumor-specific	nAS	yes
HAUS1_LS021	chr18:46122590|46124822:+	HAUS1	HAUS augmin like complex subunit 1	protein coding gene	no	ENST00000586060.5	0.135	0.092	0.698	0.615(5890)	0.557(391)	0.201(3489)	non tumor-specific	exon_skip	yes
SUGP1_LS002	chr19:19277076|19277734:-	SUGP1	SURP and G-patch domain containing 1	protein coding gene	no	ENST00000589144.5;ENST00000247001.9;ENST00000591007.6;ENST00000588731.6;ENST00000587119.5;ENST00000592188.1	89.105	40.170	42.931	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_BFSP1_LS0014	chr20:17536524|17537344:-	BFSP1	beaded filament structural protein 1	protein coding gene	no	.	2.406	0.070	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
HADHA_LS028	chr2:26234355|26236855:-	HADHA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	protein coding gene	no	ENST00000380649.7;ENST00000492433.2;ENST00000644428.1;ENST00000643057.1;ENST00000645274.1;ENST00000643233.1;ENST00000643063.1;ENST00000380649.7;ENST00000492433.2;ENST00000644428.1;ENST00000643057.1;ENST00000645274.1;ENST00000643233.1;ENST00000643063.1	226.127	202.220	131.216	0.991(9497)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RB1CC1_LS020	chr8:52661007|52661095:-	RB1CC1	RB1 inducible coiled-coil 1	protein coding gene	yes	ENST00000025008.9;ENST00000435644.6;ENST00000523594.1	23.701	18.734	14.529	0.914(8753)	0.972(682)	0.974(16923)	non tumor-specific	alt_3prime	yes
TRAF4_LS005	chr17:28747119|28747213:+	TRAF4	TNF receptor associated factor 4	protein coding gene	no	ENST00000473421.1	0.080	0.072	0.753	0.665(6375)	0.644(452)	0.092(1596)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AC104971.1_UP_LS0001	chr18:58672859|58780107:-	AC104971.1	-	no	no	.	6.451	0.223	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_STK40_LS0061	chr1:36341967|36343364:-	STK40	serine/threonine kinase 40	protein coding gene	no	.	5.917	0.465	0.000	0.013(120)	0.009(6)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_FMN1_LS0054	chr15:33154173|33163340:+	FMN1	formin 1	protein coding gene	no	.	2.958	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GLP1R_LS005	chr6:39066303|39072862:+	GLP1R	glucagon like peptide 1 receptor	protein coding gene	no	ENST00000373256.4	3.866	0.782	1.202	0.08(768)	0.085(60)	0.208(3621)	non tumor-specific	nAS	yes
UN_HUWE1_LS0040	chrX:53538428|53538835:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	.	10.173	3.064	0.000	0.008(73)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM157C_LS0250	chr16:90171590|90171726:-	FAM157C	family with sequence similarity 157 member C	lncRNA gene	no	.	4.210	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CCDC83_UP_LS0001	chr11:85635778|85650249:+	CCDC83	coiled-coil domain containing 83	protein coding gene	no	.	7.466	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC096751.1_LS0011	chr4:174530256|174536642:+	AC096751.1	-	pseudogene	no	.	4.132	0.781	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_FKBP4_LS0115	chr12:2804363|2805168:+	FKBP4	FKBP prolyl isomerase 4	protein coding gene	no	.	3.891	0.558	0.000	0.01(100)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC097521.1_UP_LS0009	chr4:187422997|187435044:+	AC097521.1	-	lncRNA gene	no	.	2.757	1.527	0.000	0.001(12)	0.016(11)	0(0)	non tumor-specific	nAS	no
ABCD4_LS003	chr14:74286816|74287810:-	ABCD4	ATP binding cassette subfamily D member 4	protein coding gene	no	ENST00000356924.8;ENST00000481348.5;ENST00000481935.5;ENST00000555904.1;ENST00000553486.5;ENST00000556517.1;ENST00000465085.2;ENST00000553745.5;ENST00000474270.1	48.188	30.839	80.934	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
TTLL12_LS001	chr22:43168159|43168774:-	TTLL12	tubulin tyrosine ligase like 12	protein coding gene	no	ENST00000216129.6;ENST00000484711.1;ENST00000494035.1	101.421	51.825	38.512	0.978(9368)	0.974(684)	0.979(17018)	non tumor-specific	alt_3prime	yes
GRTP1_LS012	chr13:113360284|113363762:-	GRTP1	growth hormone regulated TBC protein 1	protein coding gene	no	ENST00000476439.1	1.348	0.968	1.342	0.626(6001)	0.749(526)	0.602(10467)	non tumor-specific	alt_5prime	yes
HNRNPM_LS016	chr19:8467584|8468774:+	HNRNPM	heterogeneous nuclear ribonucleoprotein M	protein coding gene	no	ENST00000348943.7;ENST00000325495.8;ENST00000600092.5;ENST00000600806.5;ENST00000620401.4;ENST00000594907.5;ENST00000601645.5;ENST00000597270.1	191.278	100.797	186.841	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
USB1_LS003	chr16:58001588|58002479:+	USB1	U6 snRNA biogenesis phosphodiesterase 1	protein coding gene	no	ENST00000561568.5	0.019	0.092	0.835	0.679(6507)	0.627(440)	0.449(7808)	non tumor-specific	alt_5prime	yes
UN_HPRT1P2_UP_LS0002	chr5:30198214|30204416:+	HPRT1P2	hypoxanthine phosphoribosyltransferase 1 pseudogene 2	pseudogene	no	.	10.037	1.629	0.000	0.025(238)	0.064(45)	0(0)	non tumor-specific	nAS	no
UN_PRMT2_LS0031	chr21:46649739|46658058:+	PRMT2	protein arginine methyltransferase 2	protein coding gene	no	.	12.201	7.044	0.000	0.059(570)	0.067(47)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
GLYR1_LS012	chr16:4814629|4817598:-	GLYR1	glyoxylate reductase 1 homolog	protein coding gene	no	ENST00000591451.5;ENST00000591846.1	2.038	2.152	7.487	0.96(9202)	0.987(693)	0.965(16776)	non tumor-specific	alt_3prime	yes
CYP21A2_LS022	chr6:32040205|32040406:+	CYP21A2	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	ENST00000418967.6;ENST00000643666.1;ENST00000479074.5;ENST00000479730.5;ENST00000483041.5;ENST00000435122.3;ENST00000644719.1	147.362	555.964	2.309	0.301(2882)	0.231(162)	0.695(12089)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_IGSF8_LS0022	chr1:160092695|160098409:-	IGSF8	immunoglobulin superfamily member 8	protein coding gene	no	.	5.683	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZNF227_LS005	chr19:44212763|44213090:+	ZNF227	zinc finger protein 227	protein coding gene	no	ENST00000586048.1	0.214	0.112	0.716	0.295(2828)	0.255(179)	0.22(3831)	non tumor-specific	alt_3prime	yes
SYMPK_LS007	chr19:45816974|45817959:-	SYMPK	symplekin	protein coding gene	no	ENST00000598155.5;ENST00000593504.5;ENST00000245934.11;ENST00000600237.5;ENST00000596824.1;ENST00000598329.2	156.479	63.395	69.531	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_Z99129.2_UP_LS0030	chr6:122848430|122848560:-	Z99129.2	-	pseudogene	no	.	2.766	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA0556_LS0042	chr16:27699599|27703896:+	KIAA0556	katanin interacting protein	protein coding gene	no	.	1.389	0.204	0.000	0.008(76)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
DNAAF4_LS002	chr15:55411155|55432497:-	DNAAF4	dynein axonemal assembly factor 4	protein coding gene	no	ENST00000524160.5	0.350	0.169	0.725	0.014(136)	0.041(29)	0.062(1078)	non tumor-specific	exon_skip	yes
RAPGEF4-AS1_LS003	chr2:172679025|172734305:-	RAPGEF4-AS1	RAPGEF4 antisense RNA 1	lncRNA gene	no	ENST00000455435.1	0.731	0.037	1.254	0.014(130)	0.016(11)	0.097(1682)	non tumor-specific	nAS	yes
EPS15L1_LS028	chr19:16436999|16437770:-	EPS15L1	epidermal growth factor receptor pathway substrate 15 like 1	protein coding gene	no	ENST00000602022.5;ENST00000455140.6;ENST00000592031.5;ENST00000248070.10;ENST00000535753.6;ENST00000594975.5;ENST00000597937.5;ENST00000597559.5	23.025	14.501	24.055	0.966(9256)	0.983(690)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DRAIC_UP_LS0004	chr15:69444409|69452824:+	DRAIC	downregulated RNA in cancer, inhibitor of cell invasion and migration	lncRNA gene	no	.	0.644	0.061	0.000	0.008(80)	0.004(3)	0(0)	non tumor-specific	nAS	no
EFCAB3_LS014	chr17:62383053|62387340:+	EFCAB3	EF-hand calcium binding domain 3	protein coding gene	no	ENST00000636041.1;ENST00000450662.7;ENST00000305286.7;ENST00000520404.5;ENST00000518576.1	5.139	0.000	0.764	0.001(11)	0(0)	0.004(74)	non tumor-specific	nAS	yes
RHNO1_LS002	chr12:2877282|2877933:+	RHNO1	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein coding gene	no	ENST00000366285.5	0.059	0.005	0.552	0.037(359)	0.014(10)	0.006(104)	non tumor-specific	exon_skip	yes
COL5A3_LS002	chr19:10001881|10003565:-	COL5A3	collagen type V alpha 3 chain	protein coding gene	no	ENST00000264828.3	13.461	4.830	23.831	0.76(7278)	0.731(513)	0.95(16517)	non tumor-specific	alt_3prime	yes
UN_MIRLET7BHG_LS0015	chr22:46084314|46085658:-	MIRLET7BHG	MIRLET7B host gene	lncRNA gene	no	.	1.886	0.320	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SPAG17_LS0011	chr1:117973561|117983811:-	SPAG17	sperm associated antigen 17	protein coding gene	no	.	0.907	0.066	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
CA5BP1_LS015	chrX:15695733|15697605:+	CA5BP1	carbonic anhydrase 5B pseudogene 1	pseudogene	no	ENST00000435806.2	0.690	0.048	0.654	0.006(54)	0.006(4)	0.018(309)	non tumor-specific	nAS	yes
UN_PQLC2_LS0013	chr1:19327412|19328546:+	PQLC2	solute carrier family 66 member 1	protein coding gene	no	.	7.896	0.391	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
FERMT3_LS012	chr11:64219789|64219879:+	FERMT3	fermitin family member 3	protein coding gene	no	ENST00000279227.9	1.202	1.990	1.106	0.543(5203)	0.527(370)	0.452(7860)	non tumor-specific	alt_3prime;intron_retention	yes
PTK2_LS101	chr8:140948723|141001125:-	PTK2	protein tyrosine kinase 2	protein coding gene	no	ENST00000523067.5;ENST00000520045.5;ENST00000524040.5;ENST00000524257.5	0.198	0.161	1.463	0.759(7276)	0.782(549)	0.692(12037)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC132008.2_LS0022	chr3:197608248|197613225:-	AC132008.2	-	pseudogene	no	.	2.577	0.049	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ITSN2_LS0063	chr2:24328115|24331706:-	ITSN2	intersectin 2	protein coding gene	no	.	1.265	0.066	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRXL2B_LS0012	chr1:2589040|2589480:+	PRXL2B	peroxiredoxin like 2B	protein coding gene	no	.	8.225	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_CARD8_LS0026	chr19:48230656|48230777:-	CARD8	caspase recruitment domain family member 8	protein coding gene	no	.	1.456	1.682	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RNF217-AS1_UP_LS0004	chr6:125300659|125313324:-	RNF217-AS1	RNF217 antisense RNA 1 (head to head)	lncRNA gene	no	.	13.982	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SMOC2_LS006	chr6:168543672|168547119:+	SMOC2	SPARC related modular calcium binding 2	protein coding gene	no	ENST00000356284.6	19.514	40.870	24.047	0.82(7854)	0.933(655)	0.911(15833)	non tumor-specific	alt_3prime;exon_skip	yes
EIF2B5_LS008	chr3:184136736|184137620:+	EIF2B5	eukaryotic translation initiation factor 2B subunit epsilon	protein coding gene	no	ENST00000491144.5;ENST00000273783.8;ENST00000649814.1;ENST00000648314.1;ENST00000465218.3;ENST00000647636.1;ENST00000648890.1;ENST00000648682.1;ENST00000647909.1;ENST00000648599.1;ENST00000649688.1;ENST00000648915.1;ENST00000648882.1;ENST00000481054.5;ENST00000492226.2;ENST00000648630.1;ENST00000468748.6;ENST00000648256.1;ENST00000650244.1;ENST00000650270.1;ENST00000648145.1;ENST00000648189.1;ENST00000649545.1;ENST00000492773.6;ENST00000491144.5;ENST00000273783.8;ENST00000649814.1;ENST00000648314.1;ENST00000465218.3;ENST00000647636.1;ENST00000648890.1;ENST00000648682.1;ENST00000647909.1;ENST00000648599.1;ENST00000649688.1;ENST00000648915.1;ENST00000648882.1;ENST00000481054.5;ENST00000492226.2;ENST00000648630.1;ENST00000468748.6;ENST00000648256.1;ENST00000650244.1;ENST00000650270.1;ENST00000648145.1;ENST00000648189.1;ENST00000649545.1;ENST00000492773.6	45.082	26.366	44.531	0.987(9452)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
XPO7_LS018	chr8:21982812|21984646:+	XPO7	exportin 7	protein coding gene	no	ENST00000252512.13;ENST00000433566.8	36.726	26.327	30.228	0.967(9261)	0.989(694)	0.979(17012)	non tumor-specific	alt_3prime	yes
UN_FAM136A_LS0005	chr2:70300980|70301437:-	FAM136A	family with sequence similarity 136 member A	protein coding gene	no	.	2.394	0.820	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC104117.5_UP_LS0002	chr5:178985577|179011177:-	AC104117.5	-	lncRNA gene	no	.	3.039	2.090	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	nAS	no
JAKMIP2_LS013	chr5:147636284|147636965:-	JAKMIP2	janus kinase and microtubule interacting protein 2	protein coding gene	no	ENST00000616793.4;ENST00000265272.9;ENST00000333010.6;ENST00000504845.1	9.449	3.104	2.693	0.28(2680)	0.259(182)	0.587(10205)	non tumor-specific	exon_skip	yes
UN_USP37_LS0002	chr2:218455017|218457092:-	USP37	ubiquitin specific peptidase 37	protein coding gene	no	.	1.104	0.152	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CENPBD1P1_LS0012	chr19:58575802|58581245:+	CENPBD1P1	CENPB DNA-binding domains containing 1 pseudogene 1	pseudogene	no	.	1.024	0.484	0.000	0.006(54)	0.017(12)	0(0)	non tumor-specific	nAS	no
SUSD5_LS002	chr3:33154033|33207808:-	SUSD5	sushi domain containing 5	protein coding gene	no	ENST00000412539.1	0.288	0.132	1.090	0.132(1260)	0.171(120)	0.238(4131)	non tumor-specific	exon_skip	yes
UN_AC005670.2_LS0006	chr17:46935169|46938608:+	AC005670.2	-	protein coding gene	no	.	4.976	0.664	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNY3P10_UP_LS0012	chr13:69394003|69414948:+	RNY3P10	RNY3 pseudogene 10	small non-coding RNA gene	no	.	1.386	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FMOD_LS0075	chr1:203347404|203347569:+	FMOD	fibromodulin	protein coding gene	no	.	3.550	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RAB11B-AS1_LS0003	chr19:8377063|8390009:-	RAB11B-AS1	RAB11B antisense RNA 1	lncRNA gene	no	.	3.593	2.010	0.000	0.151(1450)	0.181(127)	0(0)	non tumor-specific	nAS	no
AL365295.1_LS006	chr14:53305053|53318031:+	AL365295.1	-	lncRNA gene	no	ENST00000435322.1	0.119	0.056	0.650	0.008(76)	0.009(6)	0.02(343)	non tumor-specific	nAS	yes
UN_YARS_LS0022	chr1:32797843|32804545:-	YARS	tyrosyl-tRNA synthetase 1	protein coding gene	no	.	4.444	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ATP13A5_LS021	chr3:193327057|193331123:-	ATP13A5	ATPase 13A5	protein coding gene	no	ENST00000342358.8	3.564	0.997	1.135	0.061(585)	0.125(88)	0.172(2994)	non tumor-specific	exon_skip	yes
SMPD4_LS019	chr2:130156813|130157251:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000439886.5	0.039	0.046	1.181	0.61(5847)	0.479(336)	0.639(11112)	non tumor-specific	alt_3prime;intron_retention	yes
UTP20_LS035	chr12:101343093|101344595:+	UTP20	UTP20 small subunit processome component	protein coding gene	no	ENST00000261637.4	9.619	4.868	3.874	0.866(8293)	0.907(637)	0.896(15572)	non tumor-specific	nAS	yes
SGTA_LS018	chr19:2782658|2783233:-	SGTA	small glutamine rich tetratricopeptide repeat containing alpha	protein coding gene	no	ENST00000589251.5	0.054	0.021	0.682	0.294(2818)	0.272(191)	0.156(2714)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AADAT_LS005	chr4:170067388|170068591:-	AADAT	aminoadipate aminotransferase	protein coding gene	no	ENST00000337664.8;ENST00000509167.5;ENST00000515480.5;ENST00000353187.6	11.732	11.692	12.793	0.872(8355)	0.97(681)	0.925(16086)	non tumor-specific	exon_skip	yes
UN_STXBP3_LS0003	chr1:108756766|108758517:+	STXBP3	syntaxin binding protein 3	protein coding gene	no	.	2.746	1.295	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_FBXO11_LS0038	chr2:47825906|47832349:-	FBXO11	F-box protein 11	protein coding gene	no	.	3.505	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	exon_skip	no
DEPDC5_LS059	chr22:31879752|31893582:+	DEPDC5	DEP domain containing 5, GATOR1 subcomplex subunit	protein coding gene	no	ENST00000535622.6;ENST00000645711.1;ENST00000644331.1;ENST00000645560.1;ENST00000645755.1;ENST00000433147.2;ENST00000644162.1;ENST00000382112.8;ENST00000400248.7;ENST00000642771.1;ENST00000646515.1;ENST00000643751.1;ENST00000646969.1;ENST00000642696.1;ENST00000647343.1;ENST00000642684.1;ENST00000646998.1;ENST00000400246.6;ENST00000645494.1;ENST00000646465.1;ENST00000643395.1;ENST00000400249.7;ENST00000382111.6;ENST00000645407.1;ENST00000448753.6;ENST00000646135.1;ENST00000646830.1;ENST00000643097.1;ENST00000644690.1;ENST00000643021.1;ENST00000642956.1;ENST00000645547.1;ENST00000479261.2;ENST00000646383.1;ENST00000642212.1;ENST00000642915.1	10.868	6.680	11.515	0.969(9283)	0.98(688)	0.977(16987)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PIK3R4_LS005	chr3:130684305|130686211:-	PIK3R4	phosphoinositide-3-kinase regulatory subunit 4	protein coding gene	no	ENST00000512677.1	0.057	0.046	0.696	0.793(7599)	0.789(554)	0.162(2809)	non tumor-specific	alt_3prime;exon_skip	yes
PPP1CA_LS001	chr11:67398645|67398722:-	PPP1CA	protein phosphatase 1 catalytic subunit alpha	protein coding gene	yes	ENST00000312989.11;ENST00000532446.5;ENST00000526510.5;ENST00000376745.8;ENST00000358239.8;ENST00000532279.1	600.873	257.735	210.597	0.953(9129)	0.953(669)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_FAM192A_LS0039	chr16:57174286|57186031:-	FAM192A	proteasome activator subunit 3 interacting protein 1	protein coding gene	no	.	1.321	0.268	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC093423.3_LS0004	chr1:89665851|89668161:+	AC093423.3	-	protein coding gene	no	.	1.144	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
NYNRIN_LS001	chr14:24399086|24399230:+	NYNRIN	NYN domain and retroviral integrase containing	protein coding gene	no	ENST00000382554.3	1.198	1.176	3.183	0.713(6835)	0.902(633)	0.81(14072)	non tumor-specific	alt_5prime	yes
DCDC2_LS003	chr6:24205102|24278049:-	DCDC2	doublecortin domain containing 2	protein coding gene	yes	ENST00000378454.7	33.135	29.029	2.131	0.512(4908)	0.771(541)	0.355(6171)	non tumor-specific	exon_skip	yes
LARS_LS020	chr5:146140261|146143412:-	LARS	leucyl-tRNA synthetase 1	protein coding gene	no	.;.	3.957	0.857	0.000	0.004(40)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SULF1_LS006	chr8:69473325|69495765:+	SULF1	sulfatase 1	protein coding gene	no	ENST00000528286.1	0.034	0.000	0.597	0.018(176)	0.003(2)	0.01(172)	non tumor-specific	alt_5prime;exon_skip	yes
AC244517.6_LS001	chr5:141182594|141187019:+	AC244517.6	-	lncRNA gene	no	ENST00000623407.1;ENST00000623884.1	0.775	0.226	0.655	0.073(700)	0.068(48)	0.039(679)	non tumor-specific	nAS	yes
UN_PLEKHH2_LS0034	chr2:43753760|43757123:+	PLEKHH2	pleckstrin homology, MyTH4 and FERM domain containing H2	protein coding gene	no	.	6.621	2.861	0.000	0.008(73)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC021683.2_LS0003	chr17:77548158|77548365:+	AC021683.2	-	lncRNA gene	no	.	2.320	0.265	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
KAT6A_LS022	chr8:42049302|42049576:-	KAT6A	lysine acetyltransferase 6A	protein coding gene	yes	ENST00000396930.4;ENST00000649827.1;ENST00000647809.1;ENST00000648030.1	3.398	1.928	1.724	0.688(6595)	0.821(576)	0.743(12907)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LRRC53_UP_LS0001	chr1:74649315|74674312:-	LRRC53	leucine rich repeat containing 53	protein coding gene	no	.	1.087	0.028	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMEM143_LS010	chr19:48345354|48363291:-	TMEM143	transmembrane protein 143	protein coding gene	no	ENST00000435956.7	0.573	0.356	1.983	0.787(7539)	0.879(617)	0.815(14166)	non tumor-specific	alt_3prime;exon_skip	yes
EFTUD2_LS048	chr17:44899041|44899369:-	EFTUD2	elongation factor Tu GTP binding domain containing 2	protein coding gene	no	ENST00000593072.5	0.010	0.004	0.594	0.41(3932)	0.43(302)	0.009(156)	non tumor-specific	exon_skip	yes
RAB6B_LS008	chr3:133841663|133864584:-	RAB6B	RAB6B, member RAS oncogene family	protein coding gene	no	ENST00000285208.8;ENST00000543906.5;ENST00000486858.5;ENST00000477759.5;ENST00000488969.1	24.350	12.099	8.012	0.876(8391)	0.892(626)	0.944(16404)	non tumor-specific	exon_skip	yes
ZCCHC10_LS005	chr5:133000201|133006759:-	ZCCHC10	zinc finger CCHC-type containing 10	protein coding gene	no	ENST00000513541.5;ENST00000508080.5;ENST00000509008.1;ENST00000511440.1	0.682	1.030	1.234	0.849(8133)	0.876(615)	0.647(11246)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KRT16P6_LS0003	chr17:16818581|16818801:-	KRT16P6	keratin 16 pseudogene 6	pseudogene	no	.	17.170	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
RRP36_LS006	chr6:43027252|43027360:+	RRP36	ribosomal RNA processing 36	protein coding gene	no	ENST00000244496.5;ENST00000607394.1	180.577	82.531	85.935	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SMCHD1_LS057	chr18:2796521|2802528:+	SMCHD1	structural maintenance of chromosomes flexible hinge domain containing 1	protein coding gene	yes	ENST00000320876.10;ENST00000577880.5;ENST00000584897.5;ENST00000645355.1	37.257	19.653	46.797	0.964(9237)	0.979(687)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
CLEC1B_LS008	chr12:9999300|10010792:-	CLEC1B	C-type lectin domain family 1 member B	protein coding gene	no	ENST00000428126.6	0.756	0.000	0.627	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
UN_SRF_LS0052	chr6:43179739|43179773:-	SRF	serum response factor	protein coding gene	no	.	2.205	0.951	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM89B_LS0056	chr11:65573622|65573727:-	FAM89B	family with sequence similarity 89 member B	protein coding gene	no	.	3.618	0.503	0.000	0.008(77)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SYNE2_LS0031	chr14:64007222|64016473:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	.	0.935	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RNA5SP389_UP_LS0574	chr14:106715109|106762315:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	55.846	3.717	0.000	0.018(175)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC024940.1_LS0019	chr12:31117480|31118897:-	AC024940.1	-	pseudogene	no	.	17.342	0.461	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MAVS_LS0047	chr20:3866794|3866879:-	MAVS	mitochondrial antiviral signaling protein	protein coding gene	no	.	1.463	0.109	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
POLM_LS013	chr7:44074233|44074398:-	POLM	DNA polymerase mu	protein coding gene	no	ENST00000242248.9	7.323	3.609	4.463	0.892(8549)	0.94(660)	0.936(16272)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_KBTBD11-OT1_LS0031	chr8:1785326|1785642:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	.	3.593	0.946	0.000	0.016(158)	0.019(13)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UBE4B_LS033	chr1:10161286|10166244:+	UBE4B	ubiquitination factor E4B	protein coding gene	yes	ENST00000488228.1	0.096	0.036	0.792	0.151(1450)	0.158(111)	0.333(5786)	non tumor-specific	exon_skip	yes
PSD_LS010	chr10:102405536|102407223:-	PSD	pleckstrin and Sec7 domain containing	protein coding gene	no	ENST00000611678.4;ENST00000406432.5;ENST00000020673.5;ENST00000461698.5	6.893	26.629	4.564	0.715(6850)	0.665(467)	0.884(15361)	non tumor-specific	alt_3prime;exon_skip	yes
ELN_LS051	chr7:74057696|74059868:+	ELN	small integral membrane protein 6	protein coding gene	no	ENST00000380562.8	0.216	0.067	0.688	0.084(805)	0.172(121)	0.065(1127)	non tumor-specific	alt_3prime	yes
UN_IGKV2-29_UP_LS0001	chr2:89236526|89244814:-	IGKV2-29	immunoglobulin kappa variable 2-29	no	no	.	34.557	36.082	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01432_LS0001	chr20:22054284|22073388:+	LINC01432	long intergenic non-protein coding RNA 1432	lncRNA gene	no	.	24.922	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAGEF1_LS0007	chr3:184711147|184711281:-	MAGEF1	MAGE family member F1	protein coding gene	no	.	5.172	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC102A_LS007	chr16:57526127|57528593:-	CCDC102A	coiled-coil domain containing 102A	protein coding gene	no	ENST00000258214.2	3.494	1.925	6.345	0.815(7807)	0.818(574)	0.92(15992)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC00578_LS0113	chr3:177648847|177651535:+	LINC00578	long intergenic non-protein coding RNA 578	lncRNA gene	no	.	5.134	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TMPRSS7_LS016	chr3:112057131|112061787:+	TMPRSS7	transmembrane serine protease 7	protein coding gene	no	ENST00000452346.6;ENST00000435737.5;ENST00000419127.5;ENST00000617607.4	1.783	0.000	0.868	0.002(16)	0(0)	0.056(971)	non tumor-specific	nAS	yes
UN_DGKI_LS0069	chr7:137722032|137722128:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	.	1.621	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_USP4_LS0023	chr3:49294598|49295164:-	USP4	ubiquitin specific peptidase 4	protein coding gene	yes	.	2.366	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime	no
NPAS3_LS021	chr14:33774530|33778466:+	NPAS3	neuronal PAS domain protein 3	protein coding gene	no	ENST00000551634.5;ENST00000551492.5;ENST00000346562.6;ENST00000548645.5;ENST00000356141.8;ENST00000357798.9;ENST00000552874.1	4.766	1.355	1.478	0.262(2508)	0.369(259)	0.511(8881)	non tumor-specific	alt_5prime;exon_skip	yes
LINC00299_LS013	chr2:8299793|8324542:-	LINC00299	long intergenic non-protein coding RNA 299	lncRNA gene	no	ENST00000430192.5	0.672	0.000	0.884	0.001(5)	0(0)	0.026(447)	non tumor-specific	nAS	yes
UN_AL691432.2_UP_LS0806	chr1:1657408|1721597:-	AL691432.2	-	lncRNA gene	no	.	14.289	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
VIL1_LS022	chr2:218436626|218437124:+	VIL1	villin 1	protein coding gene	yes	ENST00000248444.9;ENST00000392114.6	68.709	54.776	1.570	0.304(2916)	0.355(249)	0.222(3858)	non tumor-specific	nAS	yes
LZTFL1_LS006	chr3:45830990|45831073:-	LZTFL1	leucine zipper transcription factor like 1	protein coding gene	no	ENST00000296135.10;ENST00000536047.5;ENST00000539217.5;ENST00000418700.5;ENST00000448111.5;ENST00000411866.5;ENST00000490463.5	36.552	28.858	15.986	0.966(9260)	0.99(695)	0.976(16965)	non tumor-specific	exon_skip	yes
BOD1L1_LS005	chr4:13570195|13576838:-	BOD1L1	biorientation of chromosomes in cell division 1 like 1	protein coding gene	no	.;.	2.885	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CSNK2A2_LS0010	chr16:58165708|58166580:-	CSNK2A2	casein kinase 2 alpha 2	protein coding gene	yes	.	10.136	0.301	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
GOLGA4_LS038	chr3:37335166|37337666:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000356847.8	3.452	4.122	5.828	0.793(7602)	0.893(627)	0.957(16626)	non tumor-specific	alt_3prime;exon_skip	yes
AIPL1_LS002	chr17:6426684|6426881:-	AIPL1	aryl hydrocarbon receptor interacting protein like 1	protein coding gene	no	ENST00000576776.5	0.413	0.000	0.690	0.003(27)	0(0)	0.001(9)	non tumor-specific	alt_3prime	yes
UN_VPS53_LS0056	chr17:513904|514273:-	VPS53	VPS53 subunit of GARP complex	protein coding gene	yes	.	1.806	0.488	0.000	0.031(293)	0.02(14)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TEX41_LS007	chr2:144691110|144766370:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000432608.5;ENST00000598248.5;ENST00000597670.5	0.147	0.000	0.795	0.005(49)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_RNU6-1103P_UP_LS0002	chr7:24270994|24289499:+	RNU6-1103P	RNA, U6 small nuclear 1103, pseudogene	small non-coding RNA gene	no	.	4.725	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
FCAMR_LS007	chr1:206967112|206967583:-	FCAMR	Fc fragment of IgA and IgM receptor	protein coding gene	no	ENST00000324863.6;ENST00000400962.7;ENST00000324852.8;ENST00000450945.2;ENST00000487149.5;ENST00000488345.1	2.535	10.630	0.997	0.147(1413)	0.306(215)	0.041(706)	non tumor-specific	exon_skip	yes
UPF3A_LS004	chr13:114281846|114282837:+	UPF3A	UPF3A regulator of nonsense mediated mRNA decay	protein coding gene	no	ENST00000484246.5;ENST00000484246.5	0.053	0.011	0.823	0.702(6724)	0.729(512)	0.292(5077)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CAB39L_LS0052	chr13:49401587|49433318:-	CAB39L	calcium binding protein 39 like	protein coding gene	no	.	2.131	1.221	0.000	0.006(55)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_GDI1_LS0050	chrX:154442882|154442990:-	GDI1	GDP dissociation inhibitor 1	protein coding gene	no	.	3.174	0.623	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SAR1A_LS010	chr10:70161931|70162690:-	SAR1A	secretion associated Ras related GTPase 1A	protein coding gene	no	ENST00000373242.6;ENST00000373238.5	1.470	1.000	6.090	0.946(9067)	0.949(666)	0.916(15924)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AC091849.2_LS002	chr5:1546965|1548309:-	AC091849.2	-	lncRNA gene	no	ENST00000503113.1	2.015	0.604	1.670	0.074(707)	0.135(95)	0.596(10364)	non tumor-specific	nAS	yes
UN_CPEB2_LS0025	chr4:15062165|15066153:+	CPEB2	cytoplasmic polyadenylation element binding protein 2	protein coding gene	no	.	5.088	0.320	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_DHX35_LS0009	chr20:38983068|38983699:+	DHX35	DEAH-box helicase 35	protein coding gene	no	.	1.188	0.156	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_DCAKD_LS0010	chr17:45024024|45024174:+	DCAKD	dephospho-CoA kinase domain containing	protein coding gene	no	.	0.890	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CFAP70_LS019	chr10:73277361|73278179:-	CFAP70	cilia and flagella associated protein 70	protein coding gene	no	ENST00000310715.7;ENST00000462684.5;ENST00000495161.5;ENST00000433268.5;ENST00000355577.7;ENST00000394865.2	2.925	1.963	4.229	0.429(4110)	0.611(429)	0.895(15552)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AGTPBP1_LS0032	chr9:85669578|85677436:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	.	2.874	1.508	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_RPS2P55_UP_LS0011	chrX:41266907|41286298:-	RPS2P55	ribosomal protein S2 pseudogene 55	pseudogene	no	.	1.508	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BIRC6_LS0078	chr2:32510634|32512940:+	BIRC6	baculoviral IAP repeat containing 6	protein coding gene	no	.	2.060	0.493	0.000	0.01(97)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
MCAM_LS030	chr11:119316060|119317035:-	MCAM	melanoma cell adhesion molecule	protein coding gene	no	ENST00000529686.5	0.143	0.327	1.431	0.071(678)	0.191(134)	0.344(5985)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AL079307.1_LS005	chr14:51822383|51824985:+	AL079307.1	-	lncRNA gene	no	ENST00000553312.1	3.627	0.000	0.806	0.007(70)	0(0)	0.073(1262)	non tumor-specific	nAS	yes
UN_AC064875.1_UP_LS0003	chr2:13352087|13357617:-	AC064875.1	-	lncRNA gene	no	.	6.774	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EED_LS012	chr11:86266216|86268456:+	EED	embryonic ectoderm development	protein coding gene	yes	ENST00000263360.10;ENST00000327320.8;ENST00000351625.10;ENST00000525244.5;ENST00000533228.1;ENST00000534564.5	18.014	8.941	18.108	0.992(9507)	0.997(700)	0.978(16991)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZBTB21_LS0009	chr21:42002500|42002897:-	ZBTB21	zinc finger and BTB domain containing 21	protein coding gene	no	.	0.869	0.424	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
CTSL3P_LS003	chr9:87773245|87773451:+	CTSL3P	cathepsin L family member 3, pseudogene	pseudogene	no	ENST00000354530.2	1.857	0.336	0.905	0.025(240)	0.006(4)	0.01(178)	non tumor-specific	nAS	yes
UN_ABHD17A_LS0012	chr19:1877152|1881452:+	ABHD17A	abhydrolase domain containing 17A, depalmitoylase	protein coding gene	no	.	0.772	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
KCTD18_LS004	chr2:200499084|200504748:-	KCTD18	potassium channel tetramerization domain containing 18	protein coding gene	no	ENST00000359878.7;ENST00000409157.5;ENST00000478816.5	20.367	16.560	10.539	0.963(9231)	0.987(693)	0.972(16891)	non tumor-specific	alt_5prime;exon_skip	yes
TUT7_LS034	chr9:86341053|86343075:-	TUT7	terminal uridylyl transferase 7	protein coding gene	no	ENST00000277141.10;ENST00000375963.7;ENST00000375948.2	6.857	4.927	8.767	0.925(8862)	0.977(686)	0.963(16731)	non tumor-specific	exon_skip	yes
ZNF598_LS016	chr16:2002423|2002521:-	ZNF598	zinc finger protein 598, E3 ubiquitin ligase	protein coding gene	no	ENST00000563630.5;ENST00000565396.5;ENST00000562103.1	35.857	14.024	38.887	0.984(9427)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;intron_retention	yes
COL13A1_LS017	chr10:69887491|69888304:+	COL13A1	collagen type XIII alpha 1 chain	protein coding gene	no	ENST00000645393.1;ENST00000479733.5;ENST00000398978.7;ENST00000354547.7;ENST00000357811.7;ENST00000520267.5;ENST00000398969.7;ENST00000517713.5;ENST00000522165.5;ENST00000520133.5	3.847	2.568	3.513	0.44(4213)	0.422(296)	0.818(14213)	non tumor-specific	alt_3prime	yes
LPP_LS031	chr3:188708393|188746488:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	ENST00000415906.1	0.502	0.231	0.953	0.254(2435)	0.268(188)	0.368(6397)	non tumor-specific	nAS	yes
FAM90A27P_LS002	chr19:53282326|53282809:+	FAM90A27P	family with sequence similarity 90 member A27, pseudogene	pseudogene	no	ENST00000599085.1	0.750	0.022	0.674	0.012(113)	0.003(2)	0.005(87)	non tumor-specific	nAS	yes
UN_MEA1_LS0017	chr6:43013257|43013318:+	MEA1	male-enhanced antigen 1	protein coding gene	no	.	7.481	0.500	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PDCL3_LS0018	chr2:100571798|100576356:+	PDCL3	phosducin like 3	protein coding gene	no	.	49.747	6.019	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FAM157A_LS0107	chr3:198220175|198220321:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	3.903	0.253	0.000	0.008(73)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_B4GALNT4_UP_LS0001	chr11:319958|354285:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	.	68.012	4.624	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC015853.3_LS001	chr17:523429|540389:+	AC015853.3	-	lncRNA gene	no	ENST00000570974.1	0.191	0.055	0.713	0.012(111)	0.013(9)	0.004(78)	non tumor-specific	nAS	yes
UN_LHX5-AS1_LS0003	chr12:113472082|113472702:+	LHX5-AS1	LHX5 antisense RNA 1	lncRNA gene	no	.	22.138	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
AC010894.3_LS004	chr2:174656285|174665177:+	AC010894.3	-	lncRNA gene	no	ENST00000412835.1	1.018	0.000	0.485	0.005(51)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_TCEA2_LS0044	chr20:64063384|64066365:+	TCEA2	transcription elongation factor A2	protein coding gene	no	.	3.968	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime	no
DKC1_LS010	chrX:154767382|154770759:+	DKC1	dyskerin pseudouridine synthase 1	protein coding gene	no	ENST00000412124.5	1.146	0.337	0.653	0.215(2059)	0.147(103)	0.022(381)	non tumor-specific	exon_skip	yes
MRGPRE_LS001	chr11:3228860|3232141:-	MRGPRE	MAS related GPR family member E	protein coding gene	no	ENST00000389832.5	0.578	0.176	0.864	0.176(1689)	0.34(239)	0.189(3278)	non tumor-specific	nAS	yes
GAS2L3_LS019	chr12:100612141|100617744:+	GAS2L3	growth arrest specific 2 like 3	protein coding gene	no	ENST00000266754.9;ENST00000547754.5;ENST00000537247.5;ENST00000539410.2;ENST00000548067.1	2.176	0.699	1.319	0.654(6269)	0.588(413)	0.504(8758)	non tumor-specific	exon_skip	yes
UPK1A_LS010	chr19:35673545|35675840:+	UPK1A	uroplakin 1A	protein coding gene	no	ENST00000617999.4;ENST00000616789.4;ENST00000379013.6;ENST00000222275.2;ENST00000617999.4;ENST00000616789.4;ENST00000379013.6;ENST00000222275.2;ENST00000617999.4;ENST00000616789.4;ENST00000379013.6;ENST00000222275.2	14.252	54.468	1.413	0.178(1702)	0.172(121)	0.28(4873)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ZNF584_LS0052	chr19:58417405|58417490:+	ZNF584	zinc finger protein 584	protein coding gene	no	.	5.807	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SSRP1_LS0012	chr11:57327518|57327712:-	SSRP1	structure specific recognition protein 1	protein coding gene	no	.	41.222	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_POLR2A_LS0280	chr17:7513567|7514053:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	1.023	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CSNK1G2_LS0046	chr19:1980561|1980660:-	CSNK1G2	casein kinase 1 gamma 2	protein coding gene	no	.	3.649	0.690	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_WASH8P_LS0012	chr12:15636|15913:-	WASH8P	WAS protein family homolog 8, pseudogene	pseudogene	no	.	3.545	0.187	0.000	0.008(73)	0.004(3)	0(0)	non tumor-specific	nAS	no
TRMT2B_LS002	chrX:101019070|101019284:-	TRMT2B	tRNA methyltransferase 2 homolog B	protein coding gene	no	ENST00000545398.5;ENST00000372939.5;ENST00000372935.5;ENST00000372936.3	36.197	20.557	21.080	0.986(9445)	0.996(699)	0.979(17009)	non tumor-specific	exon_skip	yes
UN_ARAP2_LS0011	chr4:36015956|36019144:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	2.061	0.231	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SFRP2_LS0010	chr4:153781309|153788386:+	SFRP2	secreted frizzled related protein 2	protein coding gene	yes	.	1.285	1.000	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
HDX_LS006	chrX:84361612|84440532:-	HDX	highly divergent homeobox	protein coding gene	no	ENST00000297977.9;ENST00000506585.6;ENST00000373177.2	3.344	1.900	1.847	0.427(4094)	0.608(427)	0.733(12734)	non tumor-specific	exon_skip	yes
HYDIN_LS005	chr16:70817489|70818342:-	HYDIN	HYDIN axonemal central pair apparatus protein	protein coding gene	no	ENST00000542283.1	0.052	0.051	0.691	0.015(146)	0.019(13)	0.001(17)	non tumor-specific	nAS	yes
UN_RGL3_LS0048	chr19:11418784|11419165:-	RGL3	ral guanine nucleotide dissociation stimulator like 3	protein coding gene	no	.	0.621	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_METTL4_LS0024	chr18:2555038|2562248:-	METTL4	methyltransferase like 4	protein coding gene	no	.	1.041	0.012	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
SGSM3_LS005	chr22:40400813|40402139:+	SGSM3	small G protein signaling modulator 3	protein coding gene	no	ENST00000457767.5;ENST00000457767.5	1.144	1.356	15.277	0.951(9108)	0.929(652)	0.977(16986)	non tumor-specific	alt_3prime;exon_skip	yes
ERI1_LS018	chr8:9062784|9099859:+	ERI1	exoribonuclease 1	protein coding gene	no	ENST00000522258.1	0.703	0.327	0.673	0.052(503)	0.021(15)	0.051(894)	non tumor-specific	exon_skip;mutex_exons	yes
ADAM32_LS011	chr8:39149867|39151500:+	ADAM32	ADAM metallopeptidase domain 32	protein coding gene	no	ENST00000399831.7	0.190	0.051	0.660	0.047(450)	0.038(27)	0.039(678)	non tumor-specific	alt_3prime	yes
GAN_LS004	chr16:81354755|81356785:+	GAN	gigaxonin	protein coding gene	no	ENST00000568107.3;ENST00000648349.1;ENST00000648994.1	3.410	2.114	1.595	0.482(4616)	0.501(352)	0.715(12433)	non tumor-specific	nAS	yes
UN_FRMD4A_LS0085	chr10:14023939|14024354:-	FRMD4A	FERM domain containing 4A	protein coding gene	no	.	1.792	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
ANKS1A_LS014	chr6:35017073|35017480:+	ANKS1A	ankyrin repeat and sterile alpha motif domain containing 1A	protein coding gene	no	.;.	2.232	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
RHOT1_LS017	chr17:32199031|32199405:+	RHOT1	ras homolog family member T1	protein coding gene	no	ENST00000333942.10;ENST00000358365.7;ENST00000583994.5;ENST00000545287.6;ENST00000354266.7;ENST00000581031.5;ENST00000581094.5;ENST00000578205.5;ENST00000580976.1;ENST00000394692.6	40.310	32.179	32.877	0.959(9186)	0.987(693)	0.979(17014)	non tumor-specific	nAS	yes
POGZ_LS008	chr1:151408828|151411625:-	POGZ	pogo transposable element derived with ZNF domain	protein coding gene	no	ENST00000392723.5;ENST00000358476.7;ENST00000271715.6;ENST00000368863.6;ENST00000409503.5;ENST00000531094.5;ENST00000491586.5	44.008	25.807	45.341	0.933(8938)	0.98(688)	0.978(17001)	non tumor-specific	alt_3prime;exon_skip	yes
UN_VDAC1P5_UP_LS0008	chr12:54921486|54922215:-	VDAC1P5	voltage dependent anion channel 1 pseudogene 5	pseudogene	no	.	8.027	3.554	0.000	0.037(350)	0.064(45)	0(0)	non tumor-specific	nAS	no
SEMA3A_LS017	chr7:84194668|84195138:-	SEMA3A	semaphorin 3A	protein coding gene	no	ENST00000420047.1	0.400	0.162	0.716	0.13(1246)	0.131(92)	0.113(1958)	non tumor-specific	alt_3prime	yes
RUBCNL_LS024	chr13:46372210|46387134:-	RUBCNL	rubicon like autophagy enhancer	protein coding gene	no	ENST00000631139.2;ENST00000631139.2	0.158	0.173	0.745	0.157(1503)	0.151(106)	0.129(2247)	non tumor-specific	alt_3prime;exon_skip	yes
ADORA3_LS005	chr1:111500620|111503005:-	ADORA3	adenosine A3 receptor	protein coding gene	no	ENST00000632535.1	2.908	0.150	0.694	0.015(139)	0.003(2)	0.072(1243)	non tumor-specific	alt_3prime	yes
EPHB3_LS009	chr3:184578466|184579477:+	EPHB3	EPH receptor B3	protein coding gene	yes	ENST00000330394.2	43.996	17.516	6.915	0.761(7289)	0.776(545)	0.892(15505)	non tumor-specific	nAS	yes
AC008105.2_LS004	chr17:45248048|45248181:-	AC008105.2	-	pseudogene	no	ENST00000420431.2;ENST00000642422.1	2.333	0.833	1.030	0.304(2913)	0.286(201)	0.269(4680)	non tumor-specific	nAS	yes
UN_LINC01267_UP_LS0018	chr3:14396353|14396828:-	LINC01267	long intergenic non-protein coding RNA 1267	lncRNA gene	no	.	1.290	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
KLC4_LS003	chr6:43059271|43059405:+	KLC4	kinesin light chain 4	protein coding gene	no	ENST00000467906.5	0.205	0.100	0.819	0.013(124)	0.006(4)	0.366(6370)	non tumor-specific	nAS	yes
UN_AC010149.1_LS0010	chr2:230575216|230575922:-	AC010149.1	-	lncRNA gene	no	.	4.775	0.957	0.000	0.009(91)	0.006(4)	0(0)	non tumor-specific	nAS	no
LINC00698_LS013	chr3:63106422|63123323:+	LINC00698	long intergenic non-protein coding RNA 698	lncRNA gene	no	ENST00000475886.5	0.649	0.000	0.714	0.006(62)	0(0)	0.001(20)	non tumor-specific	nAS	yes
ODF2_LS003	chr9:128455228|128459567:+	ODF2	outer dense fiber of sperm tails 2	protein coding gene	no	ENST00000393533.6;ENST00000393533.6	0.327	0.109	0.981	0.392(3756)	0.349(245)	0.134(2336)	non tumor-specific	alt_5prime;exon_skip	yes
LUCAT1_LS031	chr5:91313777|91314080:-	LUCAT1	lung cancer associated transcript 1	lncRNA gene	no	ENST00000650150.1;ENST00000650004.1;ENST00000649322.1;ENST00000648385.1;ENST00000647807.1;ENST00000648822.1;ENST00000647761.1;ENST00000650067.1;ENST00000650321.1;ENST00000648751.1;ENST00000649702.1;ENST00000648597.1;ENST00000648636.1;ENST00000649969.1;ENST00000648310.1;ENST00000649392.1;ENST00000648439.1;ENST00000511918.6;ENST00000650529.1;ENST00000649654.1;ENST00000650381.1;ENST00000513626.2;ENST00000649138.1;ENST00000650261.1;ENST00000650273.1;ENST00000648923.1;ENST00000648773.1;ENST00000649976.1;ENST00000607854.1	1.183	0.361	1.666	0.39(3737)	0.199(140)	0.5(8690)	non tumor-specific	nAS	yes
UN_ALG3_LS0003	chr3:184242589|184242841:+	ALG3	ALG3 alpha-1,3- mannosyltransferase	protein coding gene	no	.	5.132	0.400	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FHIT_LS0148	chr3:61113354|61200617:-	FHIT	fragile histidine triad diadenosine triphosphatase	protein coding gene	yes	.	4.352	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_PRDM5_LS0001	chr4:120695275|120754553:-	PRDM5	PR/SET domain 5	protein coding gene	yes	.	3.699	0.031	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DCAF12_LS009	chr9:34125277|34125605:-	DCAF12	DDB1 and CUL4 associated factor 12	protein coding gene	no	ENST00000450964.1	0.002	0.000	0.582	0.538(5158)	0.64(449)	0.004(61)	non tumor-specific	nAS	yes
SNCAIP_LS030	chr5:122432082|122440462:+	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	ENST00000510658.5	0.133	0.001	0.675	0.003(33)	0.007(5)	0.008(140)	non tumor-specific	alt_3prime;exon_skip	yes
CSTF3_LS006	chr11:33090727|33092271:-	CSTF3	cleavage stimulation factor subunit 3	protein coding gene	no	ENST00000323959.8;ENST00000524827.6	36.825	17.580	11.079	0.987(9456)	0.997(700)	0.973(16917)	non tumor-specific	exon_skip;intron_retention	yes
UN_SLC52A1_LS0006	chr17:5034709|5034861:-	SLC52A1	solute carrier family 52 member 1	protein coding gene	no	.	1.964	0.632	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TSNAXIP1_LS027	chr16:67827942|67831169:+	TSNAXIP1	translin associated factor X interacting protein 1	protein coding gene	no	ENST00000565558.1	0.058	0.015	0.775	0.061(580)	0.019(13)	0.035(613)	non tumor-specific	nAS	yes
FAM122C_LS012	chrX:134829282|134832945:+	FAM122C	family with sequence similarity 122C	protein coding gene	no	ENST00000644752.1	2.541	0.721	0.000	0.083(792)	0.05(35)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RNU6-86P_UP_LS0008	chr9:88040111|88044100:-	RNU6-86P	RNA, U6 small nuclear 86, pseudogene	small non-coding RNA gene	no	.	12.591	3.318	0.000	0.076(727)	0.142(100)	0(0)	non tumor-specific	nAS	no
TUT4_LS015	chr1:52445869|52445957:-	TUT4	terminal uridylyl transferase 4	protein coding gene	no	ENST00000257177.8;ENST00000371544.7;ENST00000531722.5;ENST00000474453.6;ENST00000528642.5	12.537	7.132	23.884	0.968(9277)	0.987(693)	0.979(17014)	non tumor-specific	nAS	yes
LEPROTL1_LS002	chr8:30095528|30104300:+	LEPROTL1	leptin receptor overlapping transcript like 1	protein coding gene	no	ENST00000518001.1	1.198	1.253	0.772	0.453(4344)	0.463(325)	0.259(4495)	non tumor-specific	exon_skip	yes
UN_TMEM33_LS0035	chr4:41958095|41958791:-	TMEM33	transmembrane protein 33	protein coding gene	no	.	1.736	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
HTT_LS024	chr4:3132911|3134401:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10;ENST00000510626.5	13.667	10.140	7.755	0.763(7308)	0.872(612)	0.951(16534)	non tumor-specific	nAS	yes
AC009119.1_LS004	chr16:83803528|83805623:-	AC009119.1	-	lncRNA gene	no	ENST00000565064.1	0.460	0.187	0.816	0.191(1830)	0.212(149)	0.115(2007)	non tumor-specific	nAS	yes
UN_SLC16A2_LS0003	chrX:74422630|74446327:-	SLC16A2	solute carrier family 16 member 2	protein coding gene	no	.	5.094	5.686	0.000	0.007(67)	0.007(5)	0(0)	non tumor-specific	nAS	no
PPFIA2-AS1_LS009	chr12:81296769|81312047:+	PPFIA2-AS1	PPFIA2 antisense RNA 1	lncRNA gene	no	ENST00000551401.5	0.001	0.000	0.707	0(1)	0(0)	0.006(97)	non tumor-specific	nAS	yes
PRRT3-AS1_LS003	chr3:9948469|9954604:+	PRRT3-AS1	PRRT3 antisense RNA 1	lncRNA gene	no	ENST00000431558.1	5.417	2.845	3.734	0.766(7338)	0.832(584)	0.89(15467)	non tumor-specific	nAS	yes
AL136982.6_LS008	chr10:87007706|87022314:+	AL136982.6	-	lncRNA gene	no	ENST00000444180.3	0.437	0.154	0.840	0.024(226)	0.031(22)	0.229(3988)	non tumor-specific	nAS	yes
PAFAH1B1_LS014	chr17:2665456|2666016:+	PAFAH1B1	platelet activating factor acetylhydrolase 1b regulatory subunit 1	protein coding gene	yes	ENST00000576586.5;ENST00000397195.9;ENST00000609078.1	56.844	53.818	54.122	0.988(9465)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
DDX31_LS007	chr9:132632091|132642004:-	DDX31	DEAD-box helicase 31	protein coding gene	no	ENST00000372159.7;ENST00000372153.5;ENST00000438527.7	17.065	8.467	7.788	0.967(9265)	0.986(692)	0.965(16767)	non tumor-specific	nAS	yes
SCN1A_LS046	chr2:166127010|166127771:-	SCN1A	sodium voltage-gated channel alpha subunit 1	protein coding gene	no	ENST00000637988.1	1.257	0.000	0.814	0.001(11)	0(0)	0.025(436)	non tumor-specific	exon_skip	yes
UN_AL122019.1_UP_LS0015	chr1:177880798|177894916:-	AL122019.1	-	lncRNA gene	no	.	6.302	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AL109811.4_LS021	chr1:11029781|11030179:+	AL109811.4	-	protein coding gene	no	ENST00000622108.1	0.321	0.245	2.324	0.156(1494)	0.152(107)	0.836(14531)	non tumor-specific	nAS	yes
BABAM2_LS029	chr2:28310369|28338478:+	BABAM2	BRISC and BRCA1 A complex member 2	protein coding gene	no	.;.	4.061	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
RPS25_LS009	chr11:119017545|119017925:-	RPS25	ribosomal protein S25	protein coding gene	no	ENST00000532567.5;ENST00000532567.5	116.423	114.400	8.297	0.995(9537)	0.997(700)	0.971(16880)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC120057.2_LS0091	chr17:7244336|7244551:-	AC120057.2	-	protein coding gene	no	.	32.166	0.874	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF528-AS1_LS0001	chr19:52389303|52395598:-	ZNF528-AS1	ZNF528 antisense RNA 1	lncRNA gene	no	.	8.248	0.878	0.000	0.061(587)	0.057(40)	0(0)	non tumor-specific	nAS	no
UN_TSPY26P_LS0005	chr20:32188497|32188648:+	TSPY26P	testis specific protein Y-linked 26, pseudogene	pseudogene	no	.	0.857	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PSRC1_LS0001	chr1:109280489|109280770:-	PSRC1	proline and serine rich coiled-coil 1	protein coding gene	no	.	5.010	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ANKFN1_LS035	chr17:56480818|56482356:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000318698.6;ENST00000566473.6	5.232	1.211	1.551	0.142(1356)	0.08(56)	0.373(6482)	non tumor-specific	nAS	yes
UN_FUT3_LS0048	chr19:5843560|5843658:+	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	.	4.193	0.855	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SLC25A43_LS0008	chrX:119406701|119410282:+	SLC25A43	solute carrier family 25 member 43	protein coding gene	no	.	4.048	1.374	0.000	0.012(116)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SMARCA5_LS011	chr4:143536678|143538590:+	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein coding gene	no	ENST00000283131.3	97.647	64.779	42.415	0.983(9415)	0.996(699)	0.979(17014)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ABCA2_LS0067	chr9:137022855|137022941:-	ABCA2	ATP binding cassette subfamily A member 2	protein coding gene	no	.	1.752	0.000	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
DGLUCY_LS065	chr14:91215556|91216320:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	.;.	4.467	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
SGK1_LS002	chr6:134170915|134171023:-	SGK1	serum/glucocorticoid regulated kinase 1	protein coding gene	yes	ENST00000367858.9;ENST00000413996.7;ENST00000477460.6;ENST00000237305.11;ENST00000367857.9;ENST00000528577.5;ENST00000475719.6	99.071	129.825	48.101	0.99(9484)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CDC42SE2_LS0052	chr5:131358865|131359209:+	CDC42SE2	CDC42 small effector 2	protein coding gene	no	.	1.720	0.621	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCDC9_LS0005	chr19:47256154|47256523:+	CCDC9	coiled-coil domain containing 9	protein coding gene	no	.	1.215	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PAM_LS005	chr5:102755469|102865823:+	PAM	peptidylglycine alpha-amidating monooxygenase	protein coding gene	no	ENST00000512073.1	0.026	0.043	0.596	0.092(880)	0.1(70)	0.032(555)	non tumor-specific	alt_5prime	yes
ZNF655_LS029	chr7:99571792|99572245:+	ZNF655	zinc finger protein 655	protein coding gene	no	ENST00000412636.5;ENST00000425063.5;ENST00000493277.5;ENST00000422164.5;ENST00000422647.5;ENST00000427931.5;ENST00000424881.5;ENST00000494357.1;ENST00000419215.2	0.842	0.878	15.058	0.834(7993)	0.923(648)	0.966(16784)	non tumor-specific	exon_skip;intron_retention	yes
UN_GPR132_LS0010	chr14:105057280|105065060:-	GPR132	G protein-coupled receptor 132	protein coding gene	yes	.	0.651	0.153	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CFAP46_LS0045	chr10:132912528|132912559:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	.	1.769	0.150	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IL7R_LS0009	chr5:35876719|35877480:+	IL7R	interleukin 7 receptor	protein coding gene	yes	.	1.583	0.361	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
GRN_LS038	chr17:44351163|44351363:+	GRN	granulin precursor	protein coding gene	no	ENST00000053867.7;ENST00000639447.1;ENST00000586443.1	606.772	395.198	222.278	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime	yes
ZP3_LS008	chr7:76434155|76440250:+	ZP3	zona pellucida glycoprotein 3	protein coding gene	no	ENST00000336517.8;ENST00000394857.7;ENST00000416245.5;ENST00000394860.3;ENST00000466960.5	30.758	10.152	4.459	0.993(9513)	0.986(692)	0.912(15847)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GAL3ST3_UP_LS0002	chr11:66069613|66070648:-	GAL3ST3	galactose-3-O-sulfotransferase 3	protein coding gene	no	.	1.316	0.741	0.000	0.015(142)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_MUC2_LS0050	chr11:1095379|1100952:-	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	.	0.716	0.639	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
DMKN_LS071	chr19:35510252|35511411:-	DMKN	dermokine	protein coding gene	no	ENST00000339686.7;ENST00000447113.6;ENST00000418261.5;ENST00000424570.6;ENST00000451297.6	4.126	12.554	2.560	0.425(4074)	0.339(238)	0.761(13236)	non tumor-specific	exon_skip	yes
CES1_LS018	chr16:55819639|55820372:-	CES1	carboxylesterase 1	protein coding gene	no	ENST00000360526.7;ENST00000422046.6;ENST00000361503.8	160.621	396.435	34.187	0.733(7021)	0.989(694)	0.93(16158)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SPECC1L-ADORA2A_LS0004	chr22:24271598|24302195:+	SPECC1L-ADORA2A	SPECC1L-ADORA2A readthrough (NMD candidate)	protein coding gene	no	.	2.030	0.354	0.000	0.018(170)	0.013(9)	0(0)	non tumor-specific	nAS	no
AC023593.1_LS002	chr3:127625335|127628806:-	AC023593.1	-	lncRNA gene	no	ENST00000650122.1	1.871	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	yes
NCOR2_LS001	chr12:124325583|124326180:-	NCOR2	nuclear receptor corepressor 2	protein coding gene	no	ENST00000418829.5;ENST00000413172.1	1.153	0.544	3.373	0.891(8536)	0.9(632)	0.931(16181)	non tumor-specific	alt_5prime	yes
ELP1_LS019	chr9:108897038|108897148:-	ELP1	elongator complex protein 1	protein coding gene	no	ENST00000374647.9;ENST00000537196.1	32.133	19.801	31.812	0.98(9389)	0.991(696)	0.978(17001)	non tumor-specific	exon_skip	yes
HNRNPDL_LS016	chr4:82427304|82427433:-	HNRNPDL	heterogeneous nuclear ribonucleoprotein D like	protein coding gene	no	ENST00000295470.9;ENST00000621267.4;ENST00000614627.4;ENST00000507721.5;ENST00000602300.5;ENST00000349655.8;ENST00000502762.4;ENST00000630114.2;ENST00000630827.1;ENST00000514511.1	479.258	284.166	473.939	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
HEMK1_LS014	chr3:50571801|50577052:+	HEMK1	HemK methyltransferase family member 1	protein coding gene	no	ENST00000482974.1	0.018	0.040	2.005	0.846(8101)	0.842(591)	0.818(14212)	non tumor-specific	exon_skip	yes
UN_PTPRF_LS0167	chr1:43619160|43619384:-	PTPRF	protein tyrosine phosphatase receptor type F	protein coding gene	no	.	2.914	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RERE_LS0033	chr1:8355501|8355532:-	RERE	arginine-glutamic acid dipeptide repeats	protein coding gene	yes	.	10.333	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MUC12_LS016	chr7:101017663|101018595:+	MUC12	mucin 12, cell surface associated	protein coding gene	no	ENST00000379442.7;ENST00000536621.5;ENST00000305119.3;ENST00000473098.5;ENST00000467414.1;ENST00000474482.1	15.497	44.016	2.547	0.84(8048)	0.793(557)	0.719(12501)	non tumor-specific	nAS	yes
ACSL1_LS034	chr4:184803546|184805527:-	ACSL1	acyl-CoA synthetase long chain family member 1	protein coding gene	no	ENST00000513317.5	2.578	4.023	4.388	0.703(6735)	0.927(651)	0.694(12069)	non tumor-specific	alt_5prime	yes
NET1_LS005	chr10:5429229|5451830:+	NET1	solute carrier family 6 member 5	protein coding gene	yes	ENST00000355029.8;ENST00000355029.8	15.368	6.513	6.487	0.898(8601)	0.947(665)	0.931(16185)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02115_LS0001	chr5:103528461|103530317:-	LINC02115	long intergenic non-protein coding RNA 2115	lncRNA gene	no	.	7.273	0.737	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL512422.1_LS001	chr6:56844066|56861828:+	AL512422.1	-	lncRNA gene	no	ENST00000426453.1	0.518	0.191	0.806	0.128(1223)	0.038(27)	0.256(4451)	non tumor-specific	nAS	yes
NPY1R_LS013	chr4:163326705|163332796:-	NPY1R	neuropeptide Y receptor Y1	protein coding gene	no	ENST00000504790.1	0.031	0.001	0.626	0.045(428)	0.164(115)	0.012(203)	non tumor-specific	nAS	yes
ELMOD3_LS043	chr2:85378023|85389751:+	ELMOD3	ELMO domain containing 3	protein coding gene	no	.;.	1.382	0.011	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZMYM4_LS0019	chr1:35305686|35325360:+	ZMYM4	zinc finger MYM-type containing 4	protein coding gene	no	.	1.809	0.446	0.000	0.012(115)	0.011(8)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
SEMG1_LS001	chr20:45207129|45207374:+	SEMG1	semenogelin 1	protein coding gene	no	ENST00000372781.3	1.852	1.271	0.906	0.058(558)	0.097(68)	0.041(706)	non tumor-specific	exon_skip	yes
ZNRF3_LS008	chr22:29048491|29049197:+	ZNRF3	zinc and ring finger 3	protein coding gene	no	ENST00000544604.6;ENST00000402174.5;ENST00000406323.3	12.740	10.100	6.085	0.868(8321)	0.962(675)	0.923(16048)	non tumor-specific	alt_3prime	yes
AC002074.1_LS003	chr7:94307649|94367209:-	AC002074.1	-	lncRNA gene	no	ENST00000642601.1	1.183	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_ITIH6_LS0018	chrX:54788644|54788928:-	ITIH6	inter-alpha-trypsin inhibitor heavy chain family member 6	protein coding gene	no	.	2.557	0.823	0.000	0.015(145)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_RGP1_LS0012	chr9:35752815|35752846:+	RGP1	RANBP2 like and GRIP domain containing 1	protein coding gene	no	.	5.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EXTL3_LS013	chr8:28710503|28713457:+	EXTL3	exostosin like glycosyltransferase 3	protein coding gene	yes	ENST00000518223.1	0.086	0.014	0.625	0.012(114)	0.001(1)	0.004(74)	non tumor-specific	nAS	yes
UN_CMPK1_LS0016	chr1:47358402|47368469:+	CMPK1	cytidine/uridine monophosphate kinase 1	protein coding gene	no	.	1.193	0.351	0.000	0.022(214)	0.027(19)	0(0)	non tumor-specific	exon_skip	no
CHD2_LS028	chr15:92946340|92948952:+	CHD2	chromodomain helicase DNA binding protein 2	protein coding gene	no	ENST00000637613.1;ENST00000630016.1	1.851	1.128	3.033	0.705(6757)	0.707(496)	0.829(14409)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AL390786.1_UP_LS0024	chr10:84018176|84019520:-	AL390786.1	-	lncRNA gene	no	.	4.164	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MNAT1_LS0013	chr14:60800041|60808325:+	MNAT1	MNAT1 component of CDK activating kinase	protein coding gene	yes	.	4.464	0.026	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_ITGB5_LS0030	chr3:124764555|124766226:-	ITGB5	integrin subunit beta 5	protein coding gene	no	.	28.331	0.215	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC005000.1_UP_LS0043	chrX:115889898|115946386:-	AC005000.1	-	pseudogene	no	.	1.378	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GSTK1_LS019	chr7:143267733|143268091:+	GSTK1	glutathione S-transferase kappa 1	protein coding gene	no	ENST00000409500.7;ENST00000443571.6;ENST00000358406.9;ENST00000479303.1;ENST00000473649.1;ENST00000409500.7;ENST00000443571.6;ENST00000358406.9;ENST00000479303.1;ENST00000473649.1	414.075	269.251	271.549	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
COL18A1_LS041	chr21:45494915|45495358:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8;ENST00000342220.9;ENST00000459895.1	230.166	200.388	182.581	0.993(9515)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CAMKK1_LS0026	chr17:3884427|3885567:-	CAMKK1	calcium/calmodulin dependent protein kinase kinase 1	protein coding gene	no	.	1.464	0.176	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
PTCD3_LS037	chr2:86133436|86134296:+	PTCD3	pentatricopeptide repeat domain 3	protein coding gene	no	ENST00000493430.5;ENST00000477520.1	0.262	0.264	4.361	0.908(8696)	0.87(611)	0.951(16522)	non tumor-specific	alt_3prime;intron_retention	yes
UN_ATP6V0E2_LS0058	chr7:149880013|149880567:-	ATP6V0E2	ATPase H+ transporting V0 subunit e2	protein coding gene	no	.	1.465	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TSNAX_LS009	chr1:231563629|231564528:+	TSNAX	translin associated factor X	protein coding gene	no	ENST00000475168.1	2.752	1.293	3.909	0.538(5150)	0.521(366)	0.91(15811)	non tumor-specific	exon_skip	yes
HGS_LS014	chr17:81690234|81690674:+	HGS	hepatocyte growth factor-regulated tyrosine kinase substrate	protein coding gene	no	ENST00000329138.8;ENST00000576498.5;ENST00000572392.1;ENST00000576087.1	103.266	52.360	80.574	0.991(9496)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
DENND6B_LS009	chr22:50314272|50314605:-	DENND6B	DENN domain containing 6B	protein coding gene	no	.;.	5.776	0.602	0.000	0.024(229)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
P2RX2_LS016	chr12:132620583|132621001:+	P2RX2	purinergic receptor P2X 2	protein coding gene	no	ENST00000643471.1;ENST00000389110.7;ENST00000343948.8;ENST00000352418.8;ENST00000350048.9;ENST00000351222.8;ENST00000348800.9;ENST00000542301.2	5.877	2.190	3.372	0.1(958)	0.269(189)	0.395(6874)	non tumor-specific	alt_5prime	yes
UN_ZNF83_LS0135	chr19:52621246|52628158:+	ZNF83	zinc finger protein 83	protein coding gene	no	.	3.374	0.375	0.000	0.014(137)	0.009(6)	0(0)	non tumor-specific	nAS	no
COL11A1_LS023	chr1:102934556|102935060:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	ENST00000370096.8;ENST00000358392.6;ENST00000353414.8;ENST00000635193.1;ENST00000512756.5	15.378	5.101	2.838	0.504(4825)	0.098(69)	0.517(8988)	non tumor-specific	nAS	yes
MYO18A_LS062	chr17:29122253|29140340:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000590242.5;ENST00000528322.6	3.670	0.500	1.565	0.65(6223)	0.746(524)	0.625(10858)	non tumor-specific	exon_skip	yes
AL049629.1_LS003	chr11:33670979|33696586:-	AL049629.1	-	lncRNA gene	no	ENST00000534431.1	1.142	1.477	1.489	0.139(1327)	0.265(186)	0.144(2496)	non tumor-specific	nAS	yes
UN_SAMHD1_LS0030	chr20:36891782|36891908:+	SAMHD1	SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1	protein coding gene	no	.	4.431	0.365	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF524_LS0021	chr19:55602610|55602904:-	ZNF524	zinc finger protein 524	protein coding gene	no	.	4.237	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC087564.1_LS0005	chr16:51151258|51152186:-	AC087564.1	-	lncRNA gene	no	.	0.980	0.840	0.000	0.014(138)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_ARL2BP_LS0007	chr16:57246141|57248427:+	ARL2BP	ADP ribosylation factor like GTPase 2 binding protein	protein coding gene	no	.	7.108	0.869	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
TJP2_LS013	chr9:69216463|69218257:+	TJP2	tight junction protein 2	protein coding gene	no	ENST00000453658.6;ENST00000606364.5;ENST00000423935.6;ENST00000648087.1;ENST00000647986.1;ENST00000636438.1;ENST00000377259.5;ENST00000648204.1;ENST00000348208.9;ENST00000377245.9;ENST00000649943.1;ENST00000649114.1;ENST00000636247.1;ENST00000650333.1;ENST00000649783.1;ENST00000650522.1;ENST00000535702.6;ENST00000649939.1;ENST00000649134.1;ENST00000539225.2;ENST00000650084.1;ENST00000648402.1;ENST00000650378.1	30.195	30.695	34.141	0.947(9069)	0.984(691)	0.972(16887)	non tumor-specific	exon_skip	yes
Z97653.1_LS001	chr16:710851|710938:-	Z97653.1	-	lncRNA gene	no	ENST00000567096.1	0.435	0.119	0.809	0.089(857)	0.113(79)	0.113(1969)	non tumor-specific	nAS	yes
UN_ENAH_LS0066	chr1:225567414|225577853:-	ENAH	ENAH actin regulator	protein coding gene	no	.	6.408	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AGBL2_LS0003	chr11:47663112|47668841:-	AGBL2	ATP/GTP binding protein like 2	protein coding gene	no	.	2.957	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip	no
TMEM120B_LS001	chr12:121712964|121743629:+	TMEM120B	transmembrane protein 120B	protein coding gene	no	ENST00000342607.10;ENST00000449592.6	4.641	2.308	8.812	0.924(8853)	0.94(660)	0.957(16632)	non tumor-specific	exon_skip	yes
TANGO2_LS010	chr22:20021298|20036760:+	TANGO2	transport and golgi organization 2 homolog	protein coding gene	no	ENST00000434168.5	0.013	0.061	0.738	0.47(4499)	0.456(320)	0.268(4661)	non tumor-specific	alt_5prime	yes
UN_KAZN_LS0198	chr1:14911576|14960684:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	0.934	0.604	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_KAZN_UP_LS0002	chr1:13828964|13843032:+	KAZN	kazrin, periplakin interacting protein	protein coding gene	no	.	2.154	0.433	0.000	0.003(24)	0.016(11)	0(0)	non tumor-specific	nAS	no
RRP9_LS002	chr3:51933781|51934472:-	RRP9	ribosomal RNA processing 9, U3 small nucleolar RNA binding protein	protein coding gene	no	ENST00000232888.6	93.257	31.702	30.491	0.997(9550)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
UN_LINC00221_UP_LS0271	chr14:106335388|106359955:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	55.805	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGEF18_LS0022	chr19:7421257|7440344:+	ARHGEF18	Rho/Rac guanine nucleotide exchange factor 18	protein coding gene	no	.	1.227	0.126	0.000	0.009(89)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RNASEH1_UP_LS0005	chr2:3569306|3569347:-	RNASEH1	ribonuclease H1 pseudogene 1	protein coding gene	no	.	3.266	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
LYPD6B_LS009	chr2:149077596|149205253:+	LYPD6B	LY6/PLAUR domain containing 6B	protein coding gene	no	.;.	5.085	0.965	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TG_LS0040	chr8:132941542|132943120:+	TG	thyroglobulin	protein coding gene	no	.	4.121	1.133	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SNX32_LS0173	chr11:65855343|65856037:+	SNX32	sorting nexin 32	protein coding gene	no	.	24.793	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
FLI1_LS007	chr11:128758326|128768118:+	FLI1	Fli-1 proto-oncogene, ETS transcription factor	protein coding gene	yes	ENST00000527767.7;ENST00000527786.6;ENST00000534087.3;ENST00000608055.1	19.932	13.755	9.204	0.935(8959)	0.983(690)	0.963(16735)	non tumor-specific	exon_skip	yes
SLC7A7_LS033	chr14:22823072|22823185:-	SLC7A7	solute carrier family 7 member 7	protein coding gene	no	ENST00000553874.5;ENST00000553351.1	0.203	0.149	0.797	0.046(437)	0.026(18)	0.116(2016)	non tumor-specific	alt_5prime	yes
TMEM246-AS1_LS002	chr9:101468608|101479840:+	TMEM246-AS1	TMEM246 antisense RNA 1	lncRNA gene	no	ENST00000424154.5	0.383	0.077	0.951	0.054(517)	0.151(106)	0.053(921)	non tumor-specific	nAS	yes
CYP27A1_LS009	chr2:218814187|218814380:+	CYP27A1	cytochrome P450 family 27 subfamily A member 1	protein coding gene	no	ENST00000258415.8	157.016	220.577	73.461	0.984(9430)	0.997(700)	0.979(17010)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_KRBA1_LS0004	chr7:149715349|149719564:+	KRBA1	KRAB-A domain containing 1	protein coding gene	no	.	0.640	0.107	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
ITGAD_LS006	chr16:31402245|31403500:+	ITGAD	integrin subunit alpha D	protein coding gene	no	ENST00000389202.2;ENST00000444228.2	2.714	1.129	0.868	0.046(436)	0.033(23)	0.11(1905)	non tumor-specific	exon_skip	yes
UN_RABL2A_LS0015	chr2:113633986|113634153:+	RABL2A	RAB, member of RAS oncogene family like 2A	protein coding gene	no	.	3.661	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TRMT1_LS007	chr19:13107650|13109381:-	TRMT1	tRNA methyltransferase 1	protein coding gene	no	.;.	2.285	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PSEN2_LS003	chr1:226870649|226875365:+	PSEN2	presenilin 2	protein coding gene	no	ENST00000495488.5	0.130	0.224	1.274	0.72(6896)	0.795(558)	0.63(10959)	non tumor-specific	exon_skip	yes
UN_IMMP2L_LS0050	chr7:111329451|111391838:-	IMMP2L	inner mitochondrial membrane peptidase subunit 2	protein coding gene	no	.	4.061	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FMO1_LS009	chr1:171270745|171275346:+	FMO1	flavin containing dimethylaniline monoxygenase 1	protein coding gene	no	ENST00000469112.5	0.952	0.129	0.695	0.025(243)	0.033(23)	0.046(802)	non tumor-specific	exon_skip	yes
CD4_LS005	chr12:6789662|6800072:+	CD4	CD4 molecule	protein coding gene	yes	ENST00000535707.5;ENST00000011653.8;ENST00000541982.5	12.625	11.498	4.377	0.905(8669)	0.967(679)	0.868(15079)	non tumor-specific	exon_skip	yes
UN_CDH13_LS0047	chr16:83710546|83710674:-	CDH13	cadherin 13	protein coding gene	yes	.	2.224	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
TSC2_LS059	chr16:2076585|2079035:+	TSC2	TSC complex subunit 2	protein coding gene	yes	ENST00000643088.1;ENST00000642936.1;ENST00000401874.7;ENST00000644329.1;ENST00000439117.6;ENST00000568454.6;ENST00000471143.6;ENST00000643088.1;ENST00000642936.1;ENST00000401874.7;ENST00000644329.1;ENST00000439117.6;ENST00000568454.6;ENST00000471143.6;ENST00000643088.1;ENST00000642936.1;ENST00000401874.7;ENST00000644329.1;ENST00000439117.6;ENST00000568454.6;ENST00000471143.6	3.260	3.357	21.581	0.83(7956)	0.877(616)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
FBLN5_LS006	chr14:91877682|91881292:-	FBLN5	fibulin 5	protein coding gene	no	ENST00000267620.14;ENST00000342058.8;ENST00000556154.5	55.216	126.610	116.798	0.968(9276)	0.997(700)	0.964(16760)	non tumor-specific	exon_skip	yes
UN_ALDH9A1_LS0004	chr1:165662556|165695841:+	ALDH9A1	aldehyde dehydrogenase 9 family member A1	protein coding gene	no	.	6.558	5.011	0.000	0.038(363)	0.074(52)	0(0)	non tumor-specific	nAS	no
COL4A4_LS007	chr2:227025810|227027902:-	COL4A4	collagen type IV alpha 4 chain	protein coding gene	no	ENST00000396625.4	5.921	8.765	3.051	0.345(3301)	0.614(431)	0.764(13278)	non tumor-specific	exon_skip	yes
DHPS_LS035	chr19:12680325|12681359:-	DHPS	deoxyhypusine synthase	protein coding gene	no	ENST00000596162.1	0.146	0.122	0.806	0.782(7494)	0.801(562)	0.181(3148)	non tumor-specific	nAS	yes
RPLP0_LS011	chr12:120198631|120199118:-	RPLP0	ribosomal protein lateral stalk subunit P0	protein coding gene	no	.;.	170.811	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_HADHB_LS0001	chr2:26254318|26254413:+	HADHB	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	protein coding gene	no	.	7.763	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LRRC37A2_LS004	chr17:46520283|46523084:+	LRRC37A2	leucine rich repeat containing 37 member A2	protein coding gene	no	ENST00000576629.5;ENST00000333412.3	1.297	0.718	0.675	0.811(7770)	0.835(586)	0.006(107)	non tumor-specific	exon_skip	yes
ZNF781_LS005	chr19:37678773|37686451:-	ZNF781	zinc finger protein 781	protein coding gene	no	ENST00000585624.1	1.494	1.239	2.783	0.498(4769)	0.691(485)	0.802(13941)	non tumor-specific	nAS	yes
MYCBPAP_LS025	chr17:50526267|50527287:+	MYCBPAP	MYCBP associated protein	protein coding gene	no	ENST00000436259.6;ENST00000323776.9;ENST00000437498.1;ENST00000436259.6;ENST00000323776.9;ENST00000437498.1	2.676	1.437	1.470	0.071(676)	0.101(71)	0.6(10421)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_QSOX1_LS0022	chr1:180166354|180166491:+	QSOX1	quiescin sulfhydryl oxidase 1	protein coding gene	no	.	0.692	0.170	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
PFDN6_LS011	chr6:33290450|33290716:+	PFDN6	prefoldin subunit 6	protein coding gene	no	ENST00000395131.5;ENST00000374606.9;ENST00000374610.6;ENST00000374607.5	116.419	49.635	97.273	0.98(9390)	0.979(687)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PLBD1_LS0015	chr12:14520219|14535659:-	PLBD1	phospholipase B domain containing 1	protein coding gene	no	.	1.452	0.213	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM231P1_LS0003	chr16:75499958|75504681:-	TMEM231P1	TMEM231 pseudogene 1	pseudogene	no	.	4.504	1.673	0.000	0.006(54)	0.009(6)	0(0)	non tumor-specific	nAS	no
LINC02099_LS006	chr8:29791881|29796835:+	LINC02099	long intergenic non-protein coding RNA 2099	lncRNA gene	no	ENST00000517491.1	1.434	0.365	0.720	0.036(344)	0.004(3)	0.007(119)	non tumor-specific	nAS	yes
UN_RPS3AP33_UP_LS0015	chr8:7218426|7225426:-	RPS3AP33	RPS3A pseudogene 33	pseudogene	no	.	2.872	0.491	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARNT_LS035	chr1:150858460|150876543:-	ARNT	aryl hydrocarbon receptor nuclear translocator	protein coding gene	no	ENST00000358595.9;ENST00000471844.6;ENST00000354396.6;ENST00000505755.5;ENST00000497108.6;ENST00000505979.5;ENST00000504358.1	3.789	4.488	13.603	0.942(9028)	0.98(688)	0.971(16884)	non tumor-specific	exon_skip	yes
UN_VIM_LS0146	chr10:17235223|17235316:-	VIM	vimentin	protein coding gene	yes	.	302.621	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SLC15A4_LS006	chr12:128809473|128809943:-	SLC15A4	solute carrier family 15 member 4	protein coding gene	no	ENST00000266771.9;ENST00000376740.8	32.571	16.515	18.244	0.981(9402)	0.994(698)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
MRPS9_LS014	chr2:105097324|105099670:+	MRPS9	mitochondrial ribosomal protein S9	protein coding gene	no	ENST00000258455.7;ENST00000472220.1;ENST00000258455.7;ENST00000472220.1	102.443	58.082	68.663	0.995(9533)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
TBC1D31_LS002	chr8:123072846|123077111:+	TBC1D31	TBC1 domain family member 31	protein coding gene	no	ENST00000287380.5;ENST00000327098.9;ENST00000522420.5;ENST00000518099.5;ENST00000521676.5;ENST00000524307.5	2.579	0.944	1.475	0.764(7316)	0.728(511)	0.744(12930)	non tumor-specific	nAS	yes
UN_AC023095.1_LS0001	chr8:62213718|62222180:-	AC023095.1	-	lncRNA gene	no	.	3.172	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
C2orf68_LS008	chr2:85611573|85611668:-	C2orf68	chromosome 2 open reading frame 68	protein coding gene	no	ENST00000478626.1;ENST00000478626.1	0.690	0.273	2.568	0.798(7642)	0.789(554)	0.876(15221)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CYLD_LS015	chr16:50775174|50776179:+	CYLD	CYLD lysine 63 deubiquitinase	protein coding gene	yes	ENST00000311559.13;ENST00000427738.7	0.183	0.288	1.205	0.1(954)	0.105(74)	0.179(3108)	non tumor-specific	exon_skip	yes
UN_OPCML_UP_LS0004	chr11:133619654|133621576:-	OPCML	opioid binding protein/cell adhesion molecule like	protein coding gene	yes	.	1.778	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ROBO2_LS001	chr3:75906960|75937481:+	ROBO2	roundabout guidance receptor 2	protein coding gene	no	ENST00000487694.7;ENST00000602589.5	1.961	0.705	1.015	0.042(404)	0.048(34)	0.098(1710)	non tumor-specific	nAS	yes
FARP2_LS010	chr2:241403932|241405256:+	FARP2	FERM, ARH/RhoGEF and pleckstrin domain protein 2	protein coding gene	no	ENST00000467260.1	55.135	0.000	0.695	0(3)	0(0)	0.055(962)	non tumor-specific	exon_skip	yes
UN_AC244517.11_LS0024	chr5:141151742|141201266:-	AC244517.11	-	lncRNA gene	no	.	2.525	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TANC2_LS031	chr17:63412709|63413543:+	TANC2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein coding gene	no	ENST00000389520.8	1.511	0.690	1.063	0.288(2761)	0.345(242)	0.385(6687)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
RECQL_LS029	chr12:21501215|21501481:-	RECQL	RecQ like helicase	protein coding gene	no	ENST00000542432.5;ENST00000542432.5;ENST00000542432.5	0.037	0.048	0.768	0.456(4365)	0.519(364)	0.299(5202)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_FP671120.2_UP_LS0126	chr21:8210820|8254902:-	FP671120.2	-	lncRNA gene	no	.	196.108	23.890	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SENP7_LS0044	chr3:101459052|101466809:-	SENP7	SUMO specific peptidase 7	protein coding gene	no	.	1.348	0.152	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
TP53I11_LS001	chr11:44886564|44901220:-	TP53I11	tumor protein p53 inducible protein 11	protein coding gene	no	ENST00000354556.8	2.137	0.000	0.748	0(3)	0(0)	0.042(724)	non tumor-specific	nAS	yes
ATP6V1B2_LS014	chr8:20216495|20217220:+	ATP6V1B2	ATPase H+ transporting V1 subunit B2	protein coding gene	no	ENST00000276390.6	173.177	137.729	90.403	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
UN_MSI2_LS0016	chr17:57309123|57309289:-	MSI2	musashi RNA binding protein 2	protein coding gene	no	.	3.136	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ITGA1_LS0004	chr5:52788414|52800377:+	ITGA1	integrin subunit alpha 1	protein coding gene	no	.	0.748	0.098	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
EXO1_LS021	chr1:241867055|241872032:+	EXO1	exonuclease 1	protein coding gene	no	ENST00000366548.7;ENST00000348581.9;ENST00000518483.5	6.842	1.359	1.107	0.687(6578)	0.238(167)	0.306(5322)	non tumor-specific	alt_3prime	yes
UN_AC012368.1_UP_LS0009	chr2:64080223|64096208:+	AC012368.1	-	lncRNA gene	no	.	2.018	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4E3_LS008	chr3:71710484|71725192:-	EIF4E3	eukaryotic translation initiation factor 4E family member 3	protein coding gene	no	ENST00000425534.7	1.922	2.920	6.175	0.806(7718)	0.906(636)	0.958(16648)	non tumor-specific	exon_skip	yes
ALG1L5P_LS006	chr7:6928634|6929645:+	ALG1L5P	ALG1 like 5, pseudogene	pseudogene	no	ENST00000482043.1	3.041	0.516	0.717	0.082(784)	0.026(18)	0.043(745)	non tumor-specific	nAS	yes
AP3B1_LS009	chr5:78039274|78089393:-	AP3B1	adaptor related protein complex 3 subunit beta 1	protein coding gene	no	ENST00000255194.10;ENST00000519295.5	50.487	32.979	38.274	0.984(9432)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
ATP2C2_LS015	chr16:84423263|84425735:+	ATP2C2	ATPase secretory pathway Ca2+ transporting 2	protein coding gene	no	ENST00000262429.8;ENST00000416219.6;ENST00000565631.5;ENST00000420010.6;ENST00000563340.1	11.328	12.995	5.887	0.605(5801)	0.803(564)	0.562(9776)	non tumor-specific	nAS	yes
LINC02054_LS001	chr3:184401685|184422953:+	LINC02054	long intergenic non-protein coding RNA 2054	lncRNA gene	no	ENST00000478780.1	0.022	0.004	0.724	0.001(10)	0.001(1)	0.009(152)	non tumor-specific	nAS	yes
UN_FKBP2_LS0014	chr11:64242213|64242357:+	FKBP2	FKBP prolyl isomerase 2	protein coding gene	no	.	9.393	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CYP4F12_LS004	chr19:15673727|15680244:+	CYP4F12	cytochrome P450 family 4 subfamily F member 12	protein coding gene	no	ENST00000548237.5;ENST00000549622.5	0.139	0.214	0.964	0.09(864)	0.155(109)	0.284(4937)	non tumor-specific	exon_skip	yes
SPATA3_LS008	chr2:231002827|231012590:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000455816.1	1.225	0.000	0.714	0(1)	0(0)	0.002(27)	non tumor-specific	exon_skip	yes
UN_TRABD_LS0010	chr22:50190796|50193027:+	TRABD	TraB domain containing	protein coding gene	no	.	1.385	0.536	0.000	0.035(336)	0.03(21)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
WDR88_LS011	chr19:33172440|33174182:+	WDR88	WD repeat domain 88	protein coding gene	no	ENST00000361680.6	3.989	0.597	0.765	0.005(49)	0.004(3)	0.013(220)	non tumor-specific	alt_3prime;exon_skip	yes
OGFOD3_LS015	chr17:82396851|82398196:-	OGFOD3	2-oxoglutarate and iron dependent oxygenase domain containing 3	protein coding gene	no	ENST00000583445.5	0.042	0.038	0.621	0.083(791)	0.057(40)	0.027(462)	non tumor-specific	alt_3prime	yes
SYNE2_LS049	chr14:64034592|64048000:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000357395.7;ENST00000554584.5	2.413	0.311	0.585	0.001(10)	0.001(1)	0.003(50)	non tumor-specific	exon_skip	yes
UN_KLHL18_LS0018	chr3:47287530|47288151:+	KLHL18	kelch like family member 18	protein coding gene	no	.	3.019	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01807_LS003	chr2:228506509|228611252:-	LINC01807	long intergenic non-protein coding RNA 1807	lncRNA gene	no	ENST00000432481.2	0.167	0.028	1.987	0.01(93)	0.004(3)	0.013(233)	non tumor-specific	nAS	yes
ARID4A_LS019	chr14:58347117|58347647:+	ARID4A	AT-rich interaction domain 4A	protein coding gene	no	ENST00000355431.7;ENST00000348476.7;ENST00000395168.7;ENST00000431317.6;ENST00000417477.2	8.279	6.759	6.883	0.87(8336)	0.97(681)	0.965(16768)	non tumor-specific	exon_skip	yes
UN_AC126755.1_LS0003	chr16:18344283|18344860:-	AC126755.1	-	pseudogene	no	.	0.806	0.111	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_NUP160_LS0001	chr11:47783146|47784922:-	NUP160	nucleoporin 160	protein coding gene	no	.	4.269	1.847	0.000	0.033(320)	0.04(28)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NFKB1_LS012	chr4:102557206|102566987:+	NFKB1	nuclear factor kappa B subunit 1	protein coding gene	yes	ENST00000510638.1	0.009	0.098	0.642	0.105(1002)	0.123(86)	0.032(562)	non tumor-specific	nAS	yes
NAPG_LS006	chr18:10526765|10530770:+	NAPG	NSF attachment protein gamma	protein coding gene	no	ENST00000582472.3	0.212	0.107	0.627	0.527(5045)	0.543(381)	0.03(527)	non tumor-specific	exon_skip	yes
RHOXF1P1_LS003	chrX:120010791|120013313:-	RHOXF1P1	Rhox homeobox family member 1 pseudogene 1	pseudogene	no	ENST00000454625.2;ENST00000649154.1	3.252	0.338	1.096	0.102(974)	0.075(53)	0.105(1823)	non tumor-specific	nAS	yes
UN_LINC01091_LS0028	chr4:123829187|123876232:+	LINC01091	long intergenic non-protein coding RNA 1091	lncRNA gene	no	.	2.499	0.640	0.000	0.014(136)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC11_LS0022	chr5:840347|840495:-	ZDHHC11	zinc finger DHHC-type containing 11	protein coding gene	no	.	3.693	0.220	0.000	0.017(166)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
GFRAL_LS003	chr6:55333944|55350092:+	GFRAL	GDNF family receptor alpha like	protein coding gene	no	ENST00000340465.2	4.572	0.000	0.759	0.001(5)	0(0)	0.03(522)	non tumor-specific	nAS	yes
UN_RF02271_UP_LS0053	chr2:170151123|170199208:+	RF02271	-	small non-coding RNA gene	no	.	1.467	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC35B3_LS0017	chr6:8428058|8428681:-	SLC35B3	solute carrier family 35 member B3	protein coding gene	no	.	1.993	0.356	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	intron_retention	no
UN_PTPN3_LS0060	chr9:109450369|109454496:-	PTPN3	protein tyrosine phosphatase non-receptor type 3	protein coding gene	no	.	1.239	0.453	0.000	0.015(142)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_CENPK_LS0002	chr5:65521528|65524555:-	CENPK	centromere protein K	protein coding gene	no	.	1.480	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RN7SL823P_UP_LS0004	chr19:17026668|17026977:-	RN7SL823P	RNA, 7SL, cytoplasmic 823, pseudogene	small non-coding RNA gene	no	.	0.510	0.358	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC106886.5_LS0111	chr16:30736594|30737049:+	AC106886.5	-	protein coding gene	no	.	4.526	0.768	0.000	0.007(70)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PSME2_LS012	chr14:24145184|24145227:-	PSME2	proteasome activator subunit 2	protein coding gene	no	ENST00000615264.4	9.252	9.347	0.786	0.023(223)	0.017(12)	0.286(4968)	non tumor-specific	nAS	yes
LINC01435_LS003	chr10:107760875|107901009:-	LINC01435	long intergenic non-protein coding RNA 1435	lncRNA gene	no	ENST00000598903.5	1.462	0.046	0.609	0.001(9)	0.001(1)	0.002(33)	non tumor-specific	nAS	yes
UN_PCGF3_LS0027	chr4:734157|734214:-	PCGF3	polycomb group ring finger 3	protein coding gene	no	.	4.240	0.093	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
PBRM1_LS020	chr3:52589255|52603521:-	PBRM1	polybromo 1	protein coding gene	yes	ENST00000356770.8;ENST00000394830.7;ENST00000296302.11;ENST00000337303.8;ENST00000409057.5;ENST00000410007.5;ENST00000409114.7;ENST00000409767.5;ENST00000462207.1	11.547	9.016	10.431	0.922(8829)	0.977(686)	0.959(16673)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPP6R3_LS0053	chr11:68596218|68600321:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	.	7.197	0.879	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PSMD7_LS001	chr16:74296988|74299576:+	PSMD7	proteasome 26S subunit, non-ATPase 7	protein coding gene	no	ENST00000568717.1	0.302	0.193	0.694	0.138(1318)	0.12(84)	0.188(3269)	non tumor-specific	alt_3prime;exon_skip	yes
MDM4_LS014	chr1:204532819|204536918:+	MDM4	MDM4 regulator of p53	protein coding gene	yes	ENST00000367180.5	0.188	0.064	0.657	0.022(214)	0.011(8)	0.036(619)	non tumor-specific	nAS	yes
PITPNM1_LS009	chr11:67495225|67495438:-	PITPNM1	phosphatidylinositol transfer protein membrane associated 1	protein coding gene	no	ENST00000534749.5;ENST00000436757.6;ENST00000527370.5;ENST00000356404.7;ENST00000526602.1	35.705	25.790	26.339	0.99(9486)	0.991(696)	0.979(17014)	non tumor-specific	alt_3prime;intron_retention	yes
TAC1_LS008	chr7:97733819|97734826:+	TAC1	tachykinin precursor 1	protein coding gene	yes	ENST00000346867.4;ENST00000346867.4	3.707	2.257	2.141	0.152(1455)	0.322(226)	0.408(7085)	non tumor-specific	alt_5prime;exon_skip	yes
NDUFV1_LS020	chr11:67607324|67608396:+	NDUFV1	NADH:ubiquinone oxidoreductase core subunit V1	protein coding gene	no	ENST00000530014.5;ENST00000530103.5	0.006	0.179	0.833	0.87(8331)	0.912(640)	0.273(4750)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
RNFT2_LS010	chr12:116766914|116779195:+	RNFT2	ring finger protein, transmembrane 2	protein coding gene	no	ENST00000257575.8;ENST00000392549.6;ENST00000407967.7;ENST00000547718.5	4.162	1.341	1.536	0.451(4324)	0.137(96)	0.542(9427)	non tumor-specific	nAS	yes
UN_FP236383.2_UP_LS0339	chr21:8401554|8445647:-	FP236383.2	-	lncRNA gene	no	.	75.059	27.440	0.000	0.004(37)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RPSAP15_LS0001	chrX:87703394|87703504:+	RPSAP15	ribosomal protein SA pseudogene 15	pseudogene	no	.	2.589	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004231.1_LS0005	chr17:40957842|40958506:-	AC004231.1	-	lncRNA gene	no	.	6.259	0.000	0.000	0.007(66)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PAIP1_LS0013	chr5:43535640|43536900:-	PAIP1	poly(A) binding protein interacting protein 1	protein coding gene	no	.	5.662	1.184	0.000	0.017(162)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PPARD_LS003	chr6:35347150|35348914:+	PPARD	peroxisome proliferator activated receptor delta	protein coding gene	no	.;.	2.891	0.105	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
AADACL2_LS005	chr3:151745680|151756992:+	AADACL2	arylacetamide deacetylase like 2	protein coding gene	no	ENST00000445270.1;ENST00000356517.3	2.982	1.029	1.958	0.048(462)	0.09(63)	0.254(4409)	non tumor-specific	nAS	yes
UN_GTF2H2_LS0008	chr5:71065222|71067620:-	GTF2H2	general transcription factor IIH subunit 2	protein coding gene	no	.	1.087	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ANKZF1_LS005	chr2:219229900|219231928:+	ANKZF1	ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1	protein coding gene	no	ENST00000453432.5;ENST00000453432.5;ENST00000453432.5	0.023	0.027	0.647	0.202(1937)	0.231(162)	0.071(1239)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HERC2P2_LS0117	chr15:22587391|22589861:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	26.606	0.324	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MORC4_LS008	chrX:106955088|106956480:-	MORC4	MORC family CW-type zinc finger 4	protein coding gene	no	ENST00000355610.8;ENST00000255495.7	25.596	15.282	18.051	0.955(9148)	0.989(694)	0.961(16705)	non tumor-specific	exon_skip	yes
STRAP_LS010	chr12:15898018|15899904:+	STRAP	serine/threonine kinase receptor associated protein	protein coding gene	no	ENST00000541731.1;ENST00000025399.10;ENST00000419869.6;ENST00000538718.1	295.438	164.576	129.850	0.997(9552)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_AC016994.1_UP_LS0030	chr2:106767834|106774614:+	AC016994.1	-	lncRNA gene	no	.	3.641	1.024	0.000	0.014(138)	0.021(15)	0(0)	non tumor-specific	nAS	no
DVL2_LS016	chr17:7229678|7229808:-	DVL2	dishevelled segment polarity protein 2	protein coding gene	no	ENST00000005340.9;ENST00000575458.5;ENST00000575756.5;ENST00000574143.1;ENST00000574642.5;ENST00000576439.1	22.502	12.492	32.500	0.979(9382)	0.99(695)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CACNA1C_LS019	chr12:2566582|2567569:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000335762.9;ENST00000399655.5;ENST00000480911.5;ENST00000399595.5;ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000399621.5;ENST00000399637.5;ENST00000399591.5;ENST00000399641.5;ENST00000347598.8;ENST00000399606.5;ENST00000399601.5;ENST00000344100.7;ENST00000399629.5;ENST00000327702.11;ENST00000399649.5;ENST00000402845.7;ENST00000399603.5;ENST00000399634.5;ENST00000399617.5;ENST00000406454.7	2.012	2.850	4.454	0.292(2800)	0.489(343)	0.817(14196)	non tumor-specific	nAS	yes
UN_OSBPL3_LS0034	chr7:24849176|24852449:-	OSBPL3	oxysterol binding protein like 3	protein coding gene	no	.	4.463	0.301	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
AZI2_LS015	chr3:28340622|28348601:-	AZI2	5-azacytidine induced 2	protein coding gene	no	ENST00000479665.5;ENST00000463512.5;ENST00000334100.10;ENST00000420543.6	21.711	16.149	29.159	0.966(9259)	0.98(688)	0.979(17009)	non tumor-specific	alt_5prime;exon_skip	yes
INO80_LS005	chr15:40983921|40984197:-	INO80	INO80 complex ATPase subunit	protein coding gene	no	ENST00000648947.1;ENST00000361937.7;ENST00000401393.7;ENST00000558357.6;ENST00000616814.4;ENST00000559995.2	35.943	23.647	29.524	0.981(9398)	0.989(694)	0.979(17018)	non tumor-specific	nAS	yes
AP000787.1_LS009	chr11:95232176|95232590:+	AP000787.1	-	lncRNA gene	no	ENST00000536683.5;ENST00000543150.1;ENST00000540692.1	0.507	0.421	1.516	0.638(6111)	0.695(488)	0.677(11776)	non tumor-specific	nAS	yes
ARMCX4_LS026	chrX:101511055|101531644:+	ARMCX4	armadillo repeat containing X-linked 4	protein coding gene	no	ENST00000452188.5;ENST00000354842.4	1.971	0.928	9.751	0.299(2869)	0.35(246)	0.934(16235)	non tumor-specific	exon_skip	yes
UN_CHRFAM7A_LS0003	chr15:30363391|30367418:-	CHRFAM7A	CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion	protein coding gene	no	.	2.577	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC00639_LS005	chr14:38762174|38762924:-	LINC00639	long intergenic non-protein coding RNA 639	lncRNA gene	no	ENST00000553932.5;ENST00000557440.1	2.404	0.957	1.474	0.107(1021)	0.142(100)	0.462(8032)	non tumor-specific	nAS	yes
TGFB1I1_LS007	chr16:31472201|31473682:+	TGFB1I1	transforming growth factor beta 1 induced transcript 1	protein coding gene	no	ENST00000567066.6;ENST00000567066.6	0.011	0.051	0.593	0.443(4245)	0.607(426)	0.012(203)	non tumor-specific	alt_5prime;exon_skip	yes
UN_METAP1_LS0019	chr4:99060526|99061154:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	.	3.681	0.284	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_PPP3CC_LS0038	chr8:22522568|22522670:+	PPP3CC	protein phosphatase 3 catalytic subunit gamma	protein coding gene	yes	.	2.282	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime	no
IFT43_LS005	chr14:75985840|75988885:+	IFT43	intraflagellar transport 43	protein coding gene	no	ENST00000314067.10;ENST00000542766.5;ENST00000554026.5;ENST00000555305.5;ENST00000238628.10;ENST00000556742.1;ENST00000314067.10;ENST00000542766.5;ENST00000554026.5;ENST00000555305.5;ENST00000238628.10;ENST00000556742.1	51.354	31.190	41.073	0.972(9313)	0.969(680)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRSF1_LS0015	chr4:70831634|70832307:-	GRSF1	G-rich RNA sequence binding factor 1	protein coding gene	no	.	8.372	0.393	0.000	0.01(96)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DHX16_LS0018	chr6:30667574|30670410:-	DHX16	DEAH-box helicase 16	protein coding gene	no	.	1.053	0.263	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
IPO9_LS020	chr1:201866959|201868648:+	IPO9	importin 9	protein coding gene	no	ENST00000361565.8	80.546	37.032	36.665	0.99(9482)	0.994(698)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
BICRA_LS017	chr19:47699405|47701328:+	BICRA	BRD4 interacting chromatin remodeling complex associated protein	protein coding gene	no	ENST00000396720.7;ENST00000614245.1	18.894	9.541	24.608	0.972(9314)	0.986(692)	0.979(17019)	non tumor-specific	nAS	yes
DNAH10_LS025	chr12:123820758|123826687:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	6.936	1.190	0.964	0.008(79)	0.048(34)	0.073(1275)	non tumor-specific	nAS	yes
PARPBP_LS015	chr12:102151800|102153869:+	PARPBP	PARP1 binding protein	protein coding gene	no	ENST00000541394.5	0.044	0.003	0.560	0.05(476)	0.01(7)	0.022(376)	non tumor-specific	exon_skip	yes
PLXND1_LS031	chr3:129572924|129573594:-	PLXND1	plexin D1	protein coding gene	no	.;.	30.617	4.061	0.000	0.004(40)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00221_UP_LS0235	chr14:106335198|106359911:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	38.850	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
CYB5R1_LS017	chr1:202966898|202967191:-	CYB5R1	cytochrome b5 reductase 1	protein coding gene	no	ENST00000367249.8;ENST00000482572.5;ENST00000473599.5;ENST00000478009.1	56.982	39.435	46.054	0.984(9424)	0.991(696)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_MICAL1_LS0028	chr6:109451700|109452021:-	MICAL1	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein coding gene	no	.	3.474	1.170	0.000	0.021(199)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_ST14_LS0074	chr11:130208649|130209497:-	ST14	ST14 transmembrane serine protease matriptase	protein coding gene	no	.	1.136	0.171	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNST_LS007	chr1:246621634|246631894:+	CNST	consortin, connexin sorting protein	protein coding gene	no	ENST00000483271.1;ENST00000366513.8;ENST00000366512.7;ENST00000483271.1;ENST00000366513.8;ENST00000366512.7	15.948	12.942	9.744	0.91(8722)	0.981(689)	0.962(16717)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SAV1_LS0016	chr14:50645014|50661236:-	SAV1	salvador family WW domain containing protein 1	protein coding gene	no	.	1.093	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
GATM_LS010	chr15:45369521|45378385:-	GATM	glycine amidinotransferase	protein coding gene	no	ENST00000558163.1	0.043	0.064	0.974	0.369(3531)	0.548(385)	0.062(1070)	non tumor-specific	exon_skip	yes
UN_RPL5P3_UP_LS0008	chr15:71091444|71092454:-	RPL5P3	ribosomal protein L5 pseudogene 3	pseudogene	no	.	3.117	0.968	0.000	0.021(198)	0.038(27)	0(0)	non tumor-specific	nAS	no
TOGARAM2_LS019	chr2:29024374|29026853:+	TOGARAM2	TOG array regulator of axonemal microtubules 2	protein coding gene	no	ENST00000401723.5;ENST00000379558.4;ENST00000465300.5	2.594	1.802	1.848	0.099(946)	0.148(104)	0.622(10820)	non tumor-specific	alt_5prime;intron_retention	yes
UN_UBE3C_LS0034	chr7:157207935|157220689:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	4.098	3.059	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DPYSL4_LS006	chr10:132192842|132194845:+	DPYSL4	dihydropyrimidinase like 4	protein coding gene	no	ENST00000338492.8;ENST00000493882.1;ENST00000368627.1	9.469	4.652	3.524	0.464(4441)	0.321(225)	0.822(14285)	non tumor-specific	nAS	yes
MAEA_LS024	chr4:1327703|1332757:+	MAEA	macrophage erythroblast attacher, E3 ubiquitin ligase	protein coding gene	no	ENST00000303400.8;ENST00000505177.6;ENST00000264750.10;ENST00000502558.5;ENST00000510794.5;ENST00000505839.1;ENST00000303400.8;ENST00000505177.6;ENST00000264750.10;ENST00000502558.5;ENST00000510794.5;ENST00000505839.1	85.924	58.507	58.374	0.995(9536)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
TPM4_LS014	chr19:16081542|16081920:+	TPM4	tropomyosin 4	protein coding gene	no	ENST00000588483.1	0.098	0.094	0.775	0.104(998)	0.097(68)	0.283(4917)	non tumor-specific	nAS	yes
UN_PLD2_LS0022	chr17:4818106|4818303:+	PLD2	phospholipase D2	protein coding gene	no	.	4.659	1.136	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TIAM1_LS005	chr21:31124694|31127065:-	TIAM1	TIAM Rac1 associated GEF 1	protein coding gene	no	ENST00000286827.7;ENST00000423206.5;ENST00000541036.5;ENST00000636887.1;ENST00000491927.1	10.150	5.506	6.055	0.847(8114)	0.947(665)	0.891(15479)	non tumor-specific	nAS	yes
UN_SLC25A16_LS0016	chr10:68515580|68518975:-	SLC25A16	solute carrier family 25 member 16	protein coding gene	no	.	1.044	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
IZUMO3_LS002	chr9:24543754|24544201:-	IZUMO3	IZUMO family member 3	protein coding gene	no	ENST00000543880.6;ENST00000604921.5;ENST00000418122.1	100.692	0.000	0.701	0.001(6)	0(0)	0.01(169)	non tumor-specific	nAS	yes
TRIM9_LS019	chr14:51010494|51022835:-	TRIM9	tripartite motif containing 9	protein coding gene	no	ENST00000298355.7;ENST00000338969.9;ENST00000360392.4	16.511	6.011	2.150	0.402(3855)	0.389(273)	0.704(12245)	non tumor-specific	nAS	yes
ADAMTS12_LS027	chr5:33881480|33891730:-	ADAMTS12	ADAM metallopeptidase with thrombospondin type 1 motif 12	protein coding gene	no	ENST00000504830.5;ENST00000352040.7;ENST00000515401.1	3.499	2.920	3.720	0.702(6724)	0.754(529)	0.729(12676)	non tumor-specific	exon_skip	yes
EPB41L3_LS056	chr18:5489161|5630377:-	EPB41L3	erythrocyte membrane protein band 4.1 like 3	protein coding gene	yes	ENST00000637651.1;ENST00000578431.1;ENST00000637651.1;ENST00000578431.1	1.387	3.159	1.868	0.41(3933)	0.674(473)	0.591(10267)	non tumor-specific	alt_3prime;exon_skip	yes
TCEAL2_LS004	chrX:102126445|102126809:+	TCEAL2	transcription elongation factor A like 2	protein coding gene	no	ENST00000329035.2	21.609	24.488	3.268	0.34(3257)	0.726(510)	0.564(9805)	non tumor-specific	alt_3prime	yes
UN_ZNF496_LS0029	chr1:247305271|247308475:-	ZNF496	zinc finger protein 496	protein coding gene	no	.	4.306	0.195	0.000	0.022(212)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
IRAK4_LS013	chr12:43768272|43771038:+	IRAK4	interleukin 1 receptor associated kinase 4	protein coding gene	no	ENST00000550386.5;ENST00000547101.5	0.164	0.173	0.986	0.39(3739)	0.52(365)	0.554(9622)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
STK25_LS023	chr2:241500796|241501528:-	STK25	serine/threonine kinase 25	protein coding gene	no	ENST00000496159.1	8.357	3.834	7.282	0.851(8158)	0.848(595)	0.971(16870)	non tumor-specific	alt_5prime	yes
GRB10_LS007	chr7:50612839|50614770:-	GRB10	growth factor receptor bound protein 10	protein coding gene	no	ENST00000398810.6;ENST00000398812.6;ENST00000335866.7;ENST00000402578.5;ENST00000644769.1;ENST00000403097.6;ENST00000644879.1;ENST00000406641.5;ENST00000357271.9;ENST00000401949.5;ENST00000402497.6;ENST00000643299.1;ENST00000407526.6;ENST00000645075.1	33.067	18.551	28.894	0.956(9163)	0.99(695)	0.971(16885)	non tumor-specific	alt_5prime;exon_skip	yes
ECE1_LS006	chr1:21220131|21221747:-	ECE1	endothelin converting enzyme 1	protein coding gene	no	ENST00000415912.6;ENST00000649812.1;ENST00000357071.8;ENST00000531334.1;ENST00000374893.10;ENST00000264205.10;ENST00000415912.6;ENST00000649812.1;ENST00000357071.8;ENST00000531334.1;ENST00000374893.10;ENST00000264205.10	141.148	105.855	118.820	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRKY_LS0066	chrY:7377375|7379002:+	PRKY	protein kinase Y-linked (pseudogene)	pseudogene	no	.	2.912	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
MEG3_LS031	chr14:100836300|100845458:+	MEG3	maternally expressed 3	lncRNA gene	yes	ENST00000648456.1;ENST00000429159.6;ENST00000650513.1;ENST00000648802.1;ENST00000649036.1;ENST00000647780.1;ENST00000520714.5;ENST00000649261.1;ENST00000648609.1;ENST00000423456.6;ENST00000412736.7;ENST00000519709.6;ENST00000424076.8;ENST00000648138.1;ENST00000522771.8;ENST00000521404.5;ENST00000556736.5;ENST00000451743.6;ENST00000398518.6;ENST00000554639.5;ENST00000650023.1;ENST00000650549.1;ENST00000650041.1;ENST00000452514.6;ENST00000523671.7;ENST00000398474.7;ENST00000649161.1;ENST00000648123.1;ENST00000555928.5;ENST00000398461.5;ENST00000455531.1;ENST00000524035.5;ENST00000524131.5;ENST00000522618.1	104.005	47.751	172.489	0.907(8690)	0.956(671)	0.975(16954)	non tumor-specific	nAS	yes
UN_HYMAI_UP_LS0002	chr6:144057798|144094889:-	HYMAI	hydatidiform mole associated and imprinted	lncRNA gene	no	.	7.536	0.442	0.000	0.01(99)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SNRPB2_LS0007	chr20:16731766|16732199:+	SNRPB2	small nuclear ribonucleoprotein polypeptide B2	protein coding gene	no	.	12.746	2.731	0.000	0.025(241)	0.03(21)	0(0)	non tumor-specific	alt_3prime	no
UN_MPP7_LS0002	chr10:28056623|28057646:-	MPP7	membrane palmitoylated protein 7	protein coding gene	no	.	1.886	0.078	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SIPA1L1_LS005	chr14:71321181|71413948:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000555989.5;ENST00000556780.5;ENST00000555652.5	1.052	0.666	1.394	0.225(2153)	0.204(143)	0.625(10864)	non tumor-specific	exon_skip	yes
CLBA1_LS014	chr14:104989707|104991491:+	CLBA1	clathrin binding box of aftiphilin containing 1	protein coding gene	no	ENST00000389964.7;ENST00000550614.5;ENST00000389964.7;ENST00000550614.5;ENST00000389964.7;ENST00000550614.5	1.418	1.142	2.416	0.919(8806)	0.899(631)	0.83(14433)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LPP_LS0119	chr3:188748718|188771485:+	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	.	24.909	0.588	0.000	0.01(100)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ITPR3_LS0017	chr6:33633956|33635149:+	ITPR3	inositol 1,4,5-trisphosphate receptor type 3	protein coding gene	no	.	3.458	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LTBP4_LS0021	chr19:40608603|40609481:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	.	12.446	5.761	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ZNF189_LS014	chr9:101400010|101407412:+	ZNF189	zinc finger protein 189	protein coding gene	no	ENST00000615466.1	0.689	0.491	0.886	0.245(2349)	0.231(162)	0.212(3680)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
UN_MT-RNR2_LS0087	chrM:2578|2684:-	MT-RNR2	mitochondrially encoded 16S rRNA	small non-coding RNA gene	no	.	255.154	11.658	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC15A5_LS0023	chr12:16272705|16273342:+	SLC15A5	solute carrier family 15 member 5	protein coding gene	no	.	3.072	0.329	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC243829.1_LS0001	chr17:36183619|36184482:+	AC243829.1	-	lncRNA gene	no	.	1.883	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PPM1M_LS015	chr3:52249063|52249174:+	PPM1M	protein phosphatase, Mg2+/Mn2+ dependent 1M	protein coding gene	no	ENST00000323588.8;ENST00000467471.5;ENST00000296487.8;ENST00000409502.7;ENST00000489606.5;ENST00000482724.1;ENST00000443681.1	32.091	24.921	40.502	0.992(9508)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ASPSCR1_LS024	chr17:82009567|82010802:+	ASPSCR1	ASPSCR1 tether for SLC2A4, UBX domain containing	protein coding gene	yes	ENST00000306729.11;ENST00000306739.8;ENST00000580534.5;ENST00000583503.5;ENST00000582355.6;ENST00000577733.5;ENST00000578236.5;ENST00000581608.5;ENST00000585274.1	75.301	32.465	40.430	0.995(9529)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_FP236383.3_UP_LS0018	chr21:8440625|8442857:-	FP236383.3	-	lncRNA gene	no	.	6.838	3.613	0.000	0.011(102)	0.019(13)	0(0)	non tumor-specific	nAS	no
TMEM220-AS1_LS002	chr17:10729876|10754229:+	TMEM220-AS1	TMEM220 antisense RNA 1	lncRNA gene	no	ENST00000581366.5	0.410	0.537	1.284	0.363(3482)	0.729(512)	0.634(11027)	non tumor-specific	nAS	yes
UN_ACYP2_LS0035	chr2:53974049|54038212:+	ACYP2	acylphosphatase 2	protein coding gene	no	.	1.227	0.199	0.000	0.005(48)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_GNPTAB_LS0026	chr12:101788587|101789938:-	GNPTAB	N-acetylglucosamine-1-phosphate transferase subunits alpha and beta	protein coding gene	no	.	0.856	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_EXTL3_LS0029	chr8:28707146|28713457:+	EXTL3	exostosin like glycosyltransferase 3	protein coding gene	yes	.	1.295	0.085	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
ADCY9_LS021	chr16:4007558|4113750:-	ADCY9	adenylate cyclase 9	protein coding gene	no	ENST00000294016.7;ENST00000572288.1	11.495	13.111	7.014	0.847(8119)	0.972(682)	0.937(16289)	non tumor-specific	exon_skip	yes
UN_CCDC30_LS0015	chr1:42498916|42545410:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	.	5.401	0.605	0.000	0.003(30)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CHN2_LS0001	chr7:29146960|29147993:+	CHN2	chimerin 2	protein coding gene	no	.	2.418	0.148	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
MUC3A_LS009	chr7:100965866|100966386:+	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	ENST00000379458.8;ENST00000414964.5	4.174	2.268	1.670	0.223(2139)	0.164(115)	0.417(7243)	non tumor-specific	nAS	yes
EIF4E3_LS007	chr3:71699708|71710412:-	EIF4E3	eukaryotic translation initiation factor 4E family member 3	protein coding gene	no	ENST00000425534.7;ENST00000448225.5;ENST00000389826.7;ENST00000295612.7;ENST00000481525.5;ENST00000421769.6;ENST00000497838.5;ENST00000496214.6;ENST00000469524.1	10.680	13.594	12.589	0.925(8862)	0.98(688)	0.973(16913)	non tumor-specific	exon_skip;mutex_exons	yes
AC073316.1_LS006	chr7:3158255|3158491:-	AC073316.1	-	lncRNA gene	no	ENST00000402115.5	0.239	0.007	0.737	0.011(106)	0.036(25)	0.094(1626)	non tumor-specific	intron_retention	yes
UN_PDLIM5_LS0043	chr4:94640450|94641511:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	.	0.332	0.044	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
FLG-AS1_LS008	chr1:152314957|152332583:+	FLG-AS1	FLG antisense RNA 1	lncRNA gene	no	ENST00000593011.5;ENST00000420707.5;ENST00000392688.6	1.896	0.427	1.146	0.154(1480)	0.234(164)	0.476(8281)	non tumor-specific	nAS	yes
REG1A_LS007	chr2:79121680|79121988:+	REG1A	regenerating family member 1 alpha	protein coding gene	no	ENST00000233735.1;ENST00000485184.1	81.784	455.811	10.170	0.344(3295)	0.248(174)	0.676(11742)	non tumor-specific	alt_3prime;exon_skip	yes
SNHG14_LS090	chr15:25195290|25197382:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000424208.5;ENST00000456576.1	0.371	0.061	1.845	0.039(372)	0.027(19)	0.205(3560)	non tumor-specific	nAS	yes
UN_TRNP1_LS0026	chr1:26995320|26999847:+	TRNP1	tRNA-Pro (anticodon AGG) 2-6	protein coding gene	no	.	2.604	0.529	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_PLUT_LS0006	chr13:27830402|27833282:+	PLUT	PDX1 associated lncRNA, upregulator of transcription	lncRNA gene	no	.	1.225	0.558	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_RPS6KA3_LS0029	chrX:20209404|20232810:-	RPS6KA3	ribosomal protein S6 kinase A3	protein coding gene	no	.	1.606	0.303	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
STXBP5L_LS002	chr3:120909191|120909571:+	STXBP5L	syntaxin binding protein 5 like	protein coding gene	no	ENST00000495504.5	0.243	0.039	0.897	0.052(498)	0.056(39)	0.065(1131)	non tumor-specific	nAS	yes
ATXN3_LS054	chr14:92096137|92096674:-	ATXN3	ataxin 3	protein coding gene	no	ENST00000647161.1;ENST00000644486.1;ENST00000545170.5;ENST00000393287.9;ENST00000558190.6;ENST00000359366.10;ENST00000532032.5;ENST00000555816.5;ENST00000556898.5;ENST00000556644.5;ENST00000553488.5;ENST00000556958.5;ENST00000556374.5;ENST00000553491.5;ENST00000553686.5;ENST00000556288.5;ENST00000556274.5;ENST00000556339.5;ENST00000554994.5;ENST00000556671.5;ENST00000554350.5;ENST00000553309.5;ENST00000554491.5;ENST00000553498.5;ENST00000617719.4;ENST00000620536.4;ENST00000556082.6;ENST00000554673.5;ENST00000621269.4;ENST00000515746.6;ENST00000526872.3;ENST00000511362.5;ENST00000507965.5;ENST00000504047.1	7.490	4.558	11.447	0.968(9271)	0.989(694)	0.975(16943)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IGKC_LS0040	chr2:88857301|88857337:+	IGKC	immunoglobulin kappa constant	no	no	.	792.593	26.096	0.000	0.005(51)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ALKBH2_UP_LS0001	chr12:109097403|109097607:-	ALKBH2	alkB homolog 2, alpha-ketoglutarate dependent dioxygenase	protein coding gene	no	.	0.819	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
KIF20B_LS001	chr10:89701680|89705294:+	KIF20B	kinesin family member 20B	protein coding gene	no	ENST00000260753.8;ENST00000371728.7	3.232	1.025	0.968	0.491(4709)	0.486(341)	0.43(7468)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GPR157_LS0008	chr1:9101286|9103395:-	GPR157	G protein-coupled receptor 157	protein coding gene	no	.	3.131	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GPRIN1_LS0009	chr5:176599877|176609854:-	GPRIN1	G protein regulated inducer of neurite outgrowth 1	protein coding gene	no	.	1.125	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
TADA2B_LS006	chr4:7053501|7054062:+	TADA2B	transcriptional adaptor 2B	protein coding gene	no	ENST00000510704.1	0.028	0.001	0.760	0.555(5317)	0.538(378)	0.272(4732)	non tumor-specific	intron_retention	yes
AF111167.1_LS001	chr14:75260037|75260757:+	AF111167.1	-	lncRNA gene	no	ENST00000555909.5	9.385	0.413	0.685	0(1)	0.001(1)	0.009(152)	non tumor-specific	nAS	yes
ZFAND6_LS003	chr15:80059809|80115027:+	ZFAND6	zinc finger AN1-type containing 6	protein coding gene	no	ENST00000559157.5	0.047	0.012	0.635	0.008(78)	0.011(8)	0.027(462)	non tumor-specific	exon_skip;mutex_exons	yes
FKBP9P1_LS004	chr7:55687924|55691314:-	FKBP9P1	FKBP prolyl isomerase 9 pseudogene 1	pseudogene	no	ENST00000441699.1	19.798	13.129	0.709	0.887(8495)	0.915(642)	0.242(4209)	non tumor-specific	nAS	yes
UBE2H_LS005	chr7:129839335|129879568:-	UBE2H	ubiquitin conjugating enzyme E2 H	protein coding gene	no	ENST00000473814.6	1.411	1.224	1.567	0.912(8741)	0.91(639)	0.747(12984)	non tumor-specific	alt_3prime;exon_skip	yes
DENND1A_LS006	chr9:123387858|123403402:-	DENND1A	DENN domain containing 1A	protein coding gene	no	ENST00000473039.5;ENST00000473039.5	1.739	2.719	3.299	0.201(1929)	0.283(199)	0.86(14955)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GTPBP2_LS0066	chr6:43629067|43629140:-	GTPBP2	GTP binding protein 2	protein coding gene	no	.	1.477	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KIAA0232_LS0016	chr4:6785561|6795939:+	KIAA0232	KIAA0232	protein coding gene	no	.	0.558	0.023	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
FMR1_LS022	chrX:147936613|147937466:+	FMR1	FMRP translational regulator 1	protein coding gene	no	ENST00000218200.12;ENST00000370471.7;ENST00000440235.6;ENST00000616614.4;ENST00000370477.5;ENST00000439526.6;ENST00000370475.8;ENST00000616382.4;ENST00000370470.5;ENST00000620828.4;ENST00000475038.2	36.674	25.846	25.394	0.961(9207)	0.987(693)	0.979(17011)	non tumor-specific	exon_skip	yes
SYNJ2_LS004	chr6:158029026|158030408:+	SYNJ2	synaptojanin 2	protein coding gene	no	ENST00000367113.5	3.707	1.378	2.153	0.753(7210)	0.691(485)	0.781(13575)	non tumor-specific	exon_skip	yes
UN_ST6GALNAC6_LS0006	chr9:127885664|127885710:+	ST6GALNAC6	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein coding gene	no	.	2.928	1.001	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NUP35_LS0006	ch