JunctionID	Junction location	Gene symbol	Gene description	Gene type	Tumor associated gene	Transcript ID	Tumor median	NT median	Normal median	Tumor frequency(sample number)	NT frequency(sample number)	Normal frequency(sample number)	Tumor specific types	Alternative splicing types	Annotation
UN_SMIM8_LS0017	chr6:87344607|87345167:+	SMIM8	small integral membrane protein 8	protein coding gene	no	.	2.190	0.198	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF213_LS024	chr17:80328477|80332006:+	RNF213	ring finger protein 213	protein coding gene	no	ENST00000508628.6;ENST00000582970.5;ENST00000559070.5	9.189	4.733	5.687	0.793(7602)	0.876(615)	0.931(16176)	non tumor-specific	nAS	yes
COX15_LS006	chr10:99724123|99726968:-	COX15	cytochrome c oxidase assembly homolog COX15	protein coding gene	no	ENST00000370483.9;ENST00000016171.5	36.289	25.932	16.408	0.988(9465)	0.997(700)	0.978(16997)	non tumor-specific	nAS	yes
UN_SLCO1A2_LS0012	chr12:21275424|21288136:-	SLCO1A2	solute carrier organic anion transporter family member 1A2	protein coding gene	no	.	0.947	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SEMA6D_LS019	chr15:47762319|47763016:+	SEMA6D	semaphorin 6D	protein coding gene	no	ENST00000558014.5;ENST00000536845.6;ENST00000558816.5;ENST00000389425.7;ENST00000355997.7;ENST00000316364.9;ENST00000354744.8;ENST00000358066.8;ENST00000389428.7	3.349	5.416	3.858	0.419(4013)	0.756(531)	0.831(14447)	non tumor-specific	nAS	yes
UN_PLB1_LS0034	chr2:28611499|28614031:+	PLB1	phospholipase B1	protein coding gene	no	.	3.031	0.083	0.000	0.011(103)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
TUBB8_LS005	chr10:48114|48804:-	TUBB8	tubulin beta 8 class VIII	protein coding gene	no	ENST00000568866.5	0.148	0.115	0.731	0.007(65)	0.004(3)	0.009(149)	non tumor-specific	nAS	yes
UN_CBFA2T2_LS0102	chr20:33629914|33631389:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	.	0.802	0.097	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
AEN_LS007	chr15:88626749|88629226:+	AEN	apoptosis enhancing nuclease	protein coding gene	no	ENST00000332810.3	16.668	7.319	9.870	0.976(9349)	0.983(690)	0.972(16888)	non tumor-specific	intron_retention	yes
FGR_LS002	chr1:27613350|27614430:-	FGR	FGR proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000374005.7;ENST00000399173.5;ENST00000374004.5;ENST00000374003.7	17.182	18.020	14.893	0.931(8920)	0.983(690)	0.955(16592)	non tumor-specific	alt_5prime;exon_skip	yes
PIK3CG_LS005	chr7:106865776|106867550:+	PIK3CG	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein coding gene	no	ENST00000359195.3	0.347	0.292	0.792	0.182(1740)	0.256(180)	0.1(1740)	non tumor-specific	alt_5prime	yes
UN_PDZK1_LS0021	chr1:145690133|145707317:-	PDZK1	PDZ domain containing 1	protein coding gene	no	.	3.071	0.309	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
ALDOA_LS023	chr16:30068978|30069499:+	ALDOA	aldolase, fructose-bisphosphate A	protein coding gene	no	ENST00000564688.1;ENST00000564688.1	2.197	1.533	1.508	0.928(8894)	0.944(663)	0.759(13186)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LINC01361_UP_LS0021	chr1:83182286|83182433:-	LINC01361	long intergenic non-protein coding RNA 1361	lncRNA gene	no	.	1.010	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BABAM1_LS015	chr19:17274185|17275777:+	BABAM1	BRISC and BRCA1 A complex member 1	protein coding gene	no	ENST00000596335.5	0.178	0.424	1.652	0.848(8121)	0.818(574)	0.826(14362)	non tumor-specific	alt_3prime	yes
ARMCX5_LS011	chrX:102601032|102601464:+	ARMCX5	armadillo repeat containing X-linked 5	protein coding gene	no	ENST00000246174.6;ENST00000473968.5	4.625	2.943	2.658	0.924(8849)	0.962(675)	0.847(14716)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
STK16_LS020	chr2:219247757|219248193:+	STK16	serine/threonine kinase 16	protein coding gene	no	ENST00000409638.7;ENST00000396738.6;ENST00000409516.7;ENST00000496443.5;ENST00000409260.5;ENST00000478018.5	86.526	52.995	41.168	0.997(9549)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SAC3D1_LS0004	chr11:65041928|65043025:+	SAC3D1	SAC3 domain containing 1	protein coding gene	no	.	1.256	0.172	0.000	0.004(40)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_MOCS2_LS0004	chr5:53108643|53109072:-	MOCS2	molybdenum cofactor synthesis 2	protein coding gene	no	.	2.010	0.064	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_KDM5C_LS0119	chrX:53220916|53223985:-	KDM5C	lysine demethylase 5C	protein coding gene	no	.	1.053	0.188	0.000	0.015(145)	0.02(14)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AGFG2_LS014	chr7:100563962|100564218:+	AGFG2	ArfGAP with FG repeats 2	protein coding gene	no	ENST00000300176.8;ENST00000429987.1	60.924	48.396	43.171	0.992(9508)	0.997(700)	0.979(17013)	non tumor-specific	nAS	yes
UN_CRAT_LS0027	chr9:129100629|129101883:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	.	5.001	0.220	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM207A_LS0010	chr21:44940647|44943684:+	FAM207A	family with sequence similarity 207 member A	protein coding gene	no	.	1.144	0.290	0.000	0.119(1143)	0.088(62)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
SEC22B_LS001	chr1:120157192|120160384:-	SEC22B	SEC22 homolog B, vesicle trafficking protein	protein coding gene	no	ENST00000578049.3	21.645	17.110	61.582	0.922(8830)	0.934(656)	0.979(17021)	non tumor-specific	nAS	yes
CFDP1_LS005	chr16:75301905|75305024:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000562602.1	0.348	0.256	2.109	0.88(8428)	0.879(617)	0.856(14880)	non tumor-specific	exon_skip	yes
ZNF658_LS007	chr9:66903057|66903518:+	ZNF658	zinc finger protein 658	protein coding gene	no	ENST00000621015.4;ENST00000619435.1	0.285	0.129	0.714	0.05(481)	0.124(87)	0.173(3014)	non tumor-specific	nAS	yes
DGLUCY_LS072	chr14:91215556|91223679:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000523461.5;ENST00000523461.5;ENST00000523461.5	3.949	2.971	1.739	0.83(7952)	0.907(637)	0.782(13601)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ATG101_LS008	chr12:52070483|52073575:+	ATG101	autophagy related 101	protein coding gene	no	ENST00000336854.8;ENST00000552544.5;ENST00000553049.5;ENST00000548915.1;ENST00000336854.8;ENST00000552544.5;ENST00000553049.5;ENST00000548915.1	96.792	53.941	40.745	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ADCY7_LS034	chr16:50311786|50312036:+	ADCY7	adenylate cyclase 7	protein coding gene	no	ENST00000394697.6;ENST00000254235.7	18.166	7.941	9.482	0.79(7565)	0.745(523)	0.946(16435)	non tumor-specific	nAS	yes
UN_SEC22B4P_UP_LS0004	chr1:146421149|146421995:-	SEC22B4P	SEC22 homolog B4, pseudogene	pseudogene	no	.	1.469	0.208	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C11orf80_LS0031	chr11:66788242|66796281:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	.	7.033	0.602	0.000	0.012(112)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
IQUB_LS004	chr7:123461616|123462648:-	IQUB	IQ motif and ubiquitin domain containing	protein coding gene	no	ENST00000484508.5	0.000	0.071	0.834	0(0)	0.001(1)	0.001(22)	non tumor-specific	nAS	yes
UN_KIAA1211_LS0022	chr4:56298349|56301498:+	KIAA1211	capping protein inhibiting regulator of actin dynamics	protein coding gene	no	.	0.951	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
LYST_LS024	chr1:235738594|235741422:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000461526.1	0.603	0.199	1.774	0.706(6766)	0.728(511)	0.765(13299)	non tumor-specific	nAS	yes
UN_PUM2_LS0048	chr2:20297660|20307978:-	PUM2	pumilio RNA binding family member 2	protein coding gene	no	.	3.269	0.855	0.000	0.026(251)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MINDY3_LS006	chr10:15786648|15789247:-	MINDY3	MINDY lysine 48 deubiquitinase 3	protein coding gene	no	ENST00000378036.5;ENST00000477891.1;ENST00000277632.7	22.856	22.330	21.147	0.984(9428)	0.996(699)	0.975(16953)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CHST15_UP_LS0029	chr10:124306531|124307220:-	CHST15	carbohydrate sulfotransferase 15	protein coding gene	no	.	2.753	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHFR_LS0021	chr12:132827713|132828327:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	1.211	0.295	0.000	0.017(163)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_CBWD6_LS0009	chr9:41145332|41150220:-	CBWD6	COBW domain containing 6	protein coding gene	no	.	1.734	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MT-ATP6_LS0054	chrM:8970|9031:-	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	protein coding gene	no	.	486.323	219.434	0.000	0.075(718)	0.078(55)	0(0)	non tumor-specific	nAS	no
UN_UBAC2_LS0053	chr13:99386128|99386217:-	UBAC2	UBA domain containing 2	protein coding gene	no	.	8.080	1.946	0.000	0.013(122)	0.011(8)	0(0)	non tumor-specific	nAS	no
AC092747.2_LS004	chr12:27135086|27139966:+	AC092747.2	-	pseudogene	no	ENST00000545069.1	3.476	2.239	0.672	0.272(2604)	0.456(320)	0.138(2391)	non tumor-specific	nAS	yes
WDCP_LS001	chr2:24031162|24032829:-	WDCP	WD repeat and coiled coil containing	protein coding gene	no	ENST00000295148.8	7.333	3.571	4.937	0.941(9012)	0.952(668)	0.95(16511)	non tumor-specific	exon_skip	yes
SMIM21_LS002	chr18:75418192|75418786:-	SMIM21	small integral membrane protein 21	protein coding gene	no	ENST00000584508.1	1.124	0.000	0.665	0(1)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_IFNGR2_LS0010	chr21:33421685|33425102:+	IFNGR2	interferon gamma receptor 2	protein coding gene	no	.	2.738	0.993	0.000	0.008(77)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ATP2B1_LS012	chr12:89603925|89604155:-	ATP2B1	ATPase plasma membrane Ca2+ transporting 1	protein coding gene	no	ENST00000359142.7;ENST00000261173.6;ENST00000428670.7;ENST00000393164.6;ENST00000549727.1;ENST00000359142.7;ENST00000261173.6;ENST00000428670.7;ENST00000393164.6;ENST00000549727.1	28.832	24.836	14.215	0.965(9241)	0.99(695)	0.977(16979)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RIOK1_LS009	chr6:7402897|7403941:+	RIOK1	RIO kinase 1	protein coding gene	no	ENST00000379834.6;ENST00000264874.7	41.846	19.424	23.896	0.987(9460)	0.994(698)	0.978(17007)	non tumor-specific	alt_5prime;exon_skip	yes
HAL_LS013	chr12:95986160|95987067:-	HAL	histidine ammonia-lyase	protein coding gene	no	ENST00000261208.7;ENST00000541929.5;ENST00000544080.6;ENST00000538703.5;ENST00000546999.5	8.276	9.660	1.809	0.12(1148)	0.138(97)	0.469(8154)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RGP1_LS0017	chr9:35756861|35757731:+	RGP1	RANBP2 like and GRIP domain containing 1	protein coding gene	no	.	1.079	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PPAT_LS014	chr4:56407716|56435350:-	PPAT	phosphoribosyl pyrophosphate amidotransferase	protein coding gene	no	ENST00000264220.6;ENST00000510643.5;ENST00000507724.1	9.084	3.425	2.833	0.875(8379)	0.922(647)	0.884(15359)	non tumor-specific	nAS	yes
ASCC2_LS004	chr22:29792535|29793360:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000307790.7;ENST00000542393.5;ENST00000487486.5;ENST00000458594.5;ENST00000397771.6	143.880	73.295	78.878	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
LINC00630_LS013	chrX:102865152|102884143:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	ENST00000431616.5;ENST00000440496.5	1.290	0.452	1.623	0.381(3655)	0.393(276)	0.755(13132)	non tumor-specific	nAS	yes
UN_GNLY_UP_LS0006	chr2:85632019|85658666:+	GNLY	granulysin	protein coding gene	no	.	2.522	2.779	0.000	0.001(11)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P3_LS0018	chr17:64751573|64751807:-	KPNA2P3	karyopherin subunit alpha 2 pseudogene 3	pseudogene	no	.	0.476	0.099	0.000	0.014(137)	0.011(8)	0(0)	non tumor-specific	nAS	no
C21orf58_LS022	chr21:46318220|46319287:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.;.	0.982	0.258	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00476_LS0018	chr9:95813922|95831631:-	LINC00476	long intergenic non-protein coding RNA 476	lncRNA gene	no	.	1.664	1.818	0.000	0.003(25)	0.026(18)	0(0)	non tumor-specific	nAS	no
UN_AC109927.1_LS0015	chr4:138928383|138930223:+	AC109927.1	-	lncRNA gene	no	.	4.389	0.683	0.000	0.017(163)	0.075(53)	0(0)	non tumor-specific	nAS	no
R3HDM1_LS034	chr2:135639122|135641536:+	R3HDM1	R3H domain containing 1	protein coding gene	no	ENST00000264160.8;ENST00000410054.5;ENST00000409606.5;ENST00000441871.5;ENST00000429703.6	2.359	2.133	3.288	0.777(7449)	0.786(552)	0.865(15034)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PIP5K1B_LS012	chr9:68818545|68822615:+	PIP5K1B	phosphatidylinositol-4-phosphate 5-kinase type 1 beta	protein coding gene	no	ENST00000541509.5;ENST00000265382.7;ENST00000377284.5;ENST00000437200.5;ENST00000440050.5;ENST00000478500.3	8.408	11.984	5.259	0.553(5303)	0.808(567)	0.871(15142)	non tumor-specific	alt_3prime	yes
UN_TONSL_LS0022	chr8:144435440|144436751:+	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	.	1.699	0.068	0.000	0.014(130)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_LDHA_LS0054	chr11:18407462|18407501:-	LDHA	lactate dehydrogenase A	protein coding gene	no	.	6.824	0.690	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GNPNAT1_LS0013	chr14:52775946|52776076:+	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	.	3.373	0.117	0.000	0.015(145)	0.006(4)	0(0)	non tumor-specific	nAS	no
NCAPD3_LS028	chr11:134183153|134184637:-	NCAPD3	non-SMC condensin II complex subunit D3	protein coding gene	no	ENST00000525964.6	0.850	0.407	0.960	0.307(2943)	0.236(166)	0.489(8492)	non tumor-specific	exon_skip	yes
TSPAN31_LS013	chr12:57746256|57746350:+	TSPAN31	tetraspanin 31	protein coding gene	no	ENST00000553089.5;ENST00000548093.5	0.069	0.648	0.914	0.555(5319)	0.675(474)	0.386(6710)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
WDR26_LS014	chr1:224401069|224404436:-	WDR26	WD repeat domain 26	protein coding gene	no	.;.	11.448	6.375	0.000	0.005(51)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MFSD10_LS0051	chr4:2933869|2934769:-	MFSD10	major facilitator superfamily domain containing 10	protein coding gene	no	.	2.349	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SPPL3_LS007	chr12:120782767|120783674:-	SPPL3	signal peptide peptidase like 3	protein coding gene	no	ENST00000353487.6;ENST00000536996.5;ENST00000543608.5;ENST00000543854.5;ENST00000543181.5	81.873	55.367	52.726	0.991(9492)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
SRRM2_LS002	chr16:2752846|2757472:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	ENST00000575009.5;ENST00000630499.2;ENST00000576415.5	0.522	0.199	5.663	0.824(7896)	0.842(591)	0.919(15978)	non tumor-specific	alt_5prime;exon_skip	yes
ATCAY_LS010	chr19:3908370|3909486:+	ATCAY	ATCAY kinesin light chain interacting caytaxin	protein coding gene	no	ENST00000450849.6;ENST00000597739.1;ENST00000600960.1	15.960	14.649	18.059	0.127(1221)	0.088(62)	0.254(4419)	non tumor-specific	nAS	yes
UN_TIAM2_LS0012	chr6:154860998|154863743:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	.	0.820	0.077	0.000	0.005(51)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_AL390760.1_LS0003	chr9:93148063|93148333:+	AL390760.1	-	lncRNA gene	no	.	1.651	1.392	0.000	0.01(96)	0.021(15)	0(0)	non tumor-specific	nAS	no
TPM1_LS011	chr15:63044098|63065961:+	TPM1	tropomyosin 1	protein coding gene	no	ENST00000560445.1	0.023	0.006	1.073	0.398(3815)	0.476(334)	0.128(2220)	non tumor-specific	nAS	yes
ANAPC15_LS019	chr11:72111496|72112734:-	ANAPC15	anaphase promoting complex subunit 15	protein coding gene	no	ENST00000535503.5	0.047	0.042	0.843	0.717(6871)	0.759(533)	0.408(7087)	non tumor-specific	exon_skip	yes
UN_CHD8_LS0016	chr14:21386176|21389175:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	.	2.324	0.200	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
RYR2_LS040	chr1:237625804|237627807:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	2.392	1.306	2.231	0.054(513)	0.141(99)	0.523(9083)	non tumor-specific	nAS	yes
UN_GLUL_LS0068	chr1:182384710|182385383:-	GLUL	glutamate-ammonia ligase	protein coding gene	no	.	228.773	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_C18orf21_LS0001	chr18:35972805|35972845:+	C18orf21	chromosome 18 open reading frame 21	protein coding gene	no	.	2.978	0.697	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
BCAM_LS014	chr19:44819192|44819346:+	BCAM	branched chain amino acid transaminase 2	protein coding gene	no	ENST00000270233.11;ENST00000611077.5	628.860	569.896	166.163	0.986(9450)	0.997(700)	0.974(16926)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL449212.1_LS0001	chr3:129383272|129383415:-	AL449212.1	-	pseudogene	no	.	2.367	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
FBLN2_LS003	chr3:13569080|13570315:+	FBLN2	fibulin 2	protein coding gene	no	ENST00000492059.5	0.201	0.608	1.039	0.12(1150)	0.178(125)	0.136(2367)	non tumor-specific	nAS	yes
PIK3R3_LS005	chr1:46055971|46061929:-	PIK3R3	phosphoinositide-3-kinase regulatory subunit 3	protein coding gene	no	ENST00000262741.9;ENST00000372006.5;ENST00000420542.5	17.191	13.229	11.100	0.939(8997)	0.957(672)	0.934(16235)	non tumor-specific	exon_skip	yes
CHRNA4_LS001	chr20:63346863|63349653:-	CHRNA4	cholinergic receptor nicotinic alpha 4 subunit	protein coding gene	no	ENST00000370263.8;ENST00000615287.4;ENST00000463705.5;ENST00000498043.6;ENST00000467563.3;ENST00000627000.1	4.038	2.731	6.606	0.099(952)	0.261(183)	0.288(5001)	non tumor-specific	nAS	yes
ZNF546_LS013	chr19:40006182|40007274:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000599504.5;ENST00000601138.5;ENST00000600094.5;ENST00000347077.8;ENST00000595225.1	1.461	0.978	1.909	0.367(3519)	0.551(387)	0.811(14097)	non tumor-specific	nAS	yes
STRIP2_LS023	chr7:129467450|129470649:+	STRIP2	striatin interacting protein 2	protein coding gene	no	ENST00000249344.6;ENST00000435494.2	6.997	4.298	3.268	0.544(5210)	0.258(181)	0.827(14380)	non tumor-specific	exon_skip	yes
UN_LRRC42_LS0001	chr1:53946126|53946449:+	LRRC42	leucine rich repeat containing 42	protein coding gene	no	.	0.488	0.077	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
RABL3_LS001	chr3:120689888|120690449:-	RABL3	RAB, member of RAS oncogene family like 3	protein coding gene	no	ENST00000273375.7;ENST00000648525.1;ENST00000473654.5;ENST00000485161.5;ENST00000481015.5;ENST00000465022.5;ENST00000491398.5;ENST00000483733.1	23.139	19.753	14.886	0.94(9007)	0.969(680)	0.976(16971)	non tumor-specific	alt_5prime;exon_skip	yes
CARD8_LS048	chr19:48249847|48255792:-	CARD8	caspase recruitment domain family member 8	protein coding gene	no	ENST00000517510.5;ENST00000520753.5;ENST00000521613.5;ENST00000519940.5;ENST00000522889.5;ENST00000519332.5;ENST00000520007.5;ENST00000521437.1	1.569	1.283	8.406	0.949(9092)	0.963(676)	0.975(16945)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL513124.1_UP_LS0026	chr9:74477005|74477667:-	AL513124.1	-	pseudogene	no	.	2.891	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EMC3_LS011	chr3:9977446|9978210:-	EMC3	ER membrane protein complex subunit 3	protein coding gene	no	ENST00000497557.1	0.146	0.113	0.629	0.91(8719)	0.94(660)	0.058(1010)	non tumor-specific	nAS	yes
UN_PTCH2_LS0016	chr1:44832341|44833023:-	PTCH2	patched 2	protein coding gene	yes	.	1.367	0.218	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LRP8_LS016	chr1:53260605|53262068:-	LRP8	LDL receptor related protein 8	protein coding gene	no	ENST00000306052.10;ENST00000371454.6;ENST00000465675.5;ENST00000354412.7;ENST00000480045.5;ENST00000347547.6;ENST00000459674.5;ENST00000460214.5;ENST00000481431.1	10.396	3.905	4.282	0.802(7687)	0.641(450)	0.89(15463)	non tumor-specific	alt_3prime;exon_skip	yes
NPIPB4_LS047	chr16:21865063|21879378:-	NPIPB4	nuclear pore complex interacting protein family member B4	protein coding gene	no	.;.	1.718	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	yes
KBTBD11-OT1_LS026	chr8:1898525|1903281:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000635773.1	10.629	9.301	22.148	0.84(8048)	0.902(633)	0.946(16446)	non tumor-specific	exon_skip	yes
UN_MLF2_LS0023	chr12:6748191|6748399:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	3.333	0.140	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
RYR3_LS096	chr15:33825676|33827199:+	RYR3	ryanodine receptor 3	protein coding gene	no	.;.	1.509	0.251	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
ZNF318_LS014	chr6:43365440|43368967:-	ZNF318	zinc finger protein 318	protein coding gene	no	ENST00000605935.5;ENST00000361428.2	1.815	0.921	3.780	0.815(7809)	0.853(599)	0.928(16133)	non tumor-specific	nAS	yes
HDAC6_LS019	chrX:48802785|48802920:+	HDAC6	histone deacetylase 6	protein coding gene	no	ENST00000477561.5	0.037	0.042	1.136	0.538(5157)	0.617(433)	0.626(10887)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
TRAPPC4_LS014	chr11:119021886|119023321:+	TRAPPC4	trafficking protein particle complex 4	protein coding gene	no	ENST00000533632.5;ENST00000528230.5;ENST00000525303.5;ENST00000434101.6;ENST00000531290.5;ENST00000359005.8;ENST00000525079.5;ENST00000533012.1;ENST00000533149.1;ENST00000524797.1	41.068	27.075	100.070	0.989(9478)	0.974(684)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_DGLUCY_LS0058	chr14:91215793|91223676:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	.	4.807	0.575	0.000	0.016(156)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TSEN54_LS033	chr17:75522535|75523663:+	TSEN54	tRNA splicing endonuclease subunit 54	protein coding gene	no	.;.	5.031	0.046	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
HYDIN_LS015	chr16:70849947|70850448:-	HYDIN	HYDIN axonemal central pair apparatus protein	protein coding gene	no	ENST00000393567.6;ENST00000378856.8	2.035	1.994	1.014	0.121(1164)	0.258(181)	0.056(971)	non tumor-specific	nAS	yes
ADGRL2_LS049	chr1:81985355|81987260:+	ADGRL2	adhesion G protein-coupled receptor L2	protein coding gene	no	ENST00000472424.1	1.365	2.555	4.427	0.798(7643)	0.925(649)	0.818(14214)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DQX1_LS005	chr2:74520034|74522580:-	DQX1	DEAQ-box RNA dependent ATPase 1	protein coding gene	no	ENST00000418139.5;ENST00000393951.6;ENST00000404568.3;ENST00000483555.5;ENST00000473508.1	4.533	2.471	2.008	0.319(3054)	0.178(125)	0.328(5700)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ROCK1_LS0013	chr18:21015479|21017021:-	ROCK1	Rho associated coiled-coil containing protein kinase 1	protein coding gene	yes	.	1.892	0.384	0.000	0.009(90)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_GRAMD4_LS0048	chr22:46665796|46666825:+	GRAMD4	GRAM domain containing 4	protein coding gene	no	.	5.939	0.748	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
NRXN2_LS029	chr11:64668604|64677014:-	NRXN2	neurexin 2	protein coding gene	no	ENST00000377559.7;ENST00000409571.5	2.103	6.062	7.590	0.069(665)	0.011(8)	0.195(3387)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GRM5-AS1_UP_LS0031	chr11:88422621|88423487:+	GRM5-AS1	GRM5 antisense RNA 1	lncRNA gene	no	.	1.552	0.269	0.000	0.024(227)	0.013(9)	0(0)	non tumor-specific	nAS	no
RPTOR_LS007	chr17:80709114|80730560:+	RPTOR	regulatory associated protein of MTOR complex 1	protein coding gene	no	ENST00000572733.1	0.038	0.013	1.446	0.558(5349)	0.603(423)	0.103(1791)	non tumor-specific	nAS	yes
UN_STAG3_LS0004	chr7:100182839|100218617:+	STAG3	stromal antigen 3	protein coding gene	no	.	0.935	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_USP20_LS0022	chr9:129849617|129849813:+	USP20	ubiquitin specific peptidase 20	protein coding gene	no	.	1.022	0.162	0.000	0.013(122)	0.007(5)	0(0)	non tumor-specific	nAS	no
ESM1_LS001	chr5:54979435|54981997:-	ESM1	endothelial cell specific molecule 1	protein coding gene	no	ENST00000381405.4	28.529	5.701	1.679	0.858(8219)	0.678(476)	0.447(7762)	non tumor-specific	exon_skip	yes
UN_THADA_LS0084	chr2:43430302|43482727:-	THADA	THADA armadillo repeat containing	protein coding gene	no	.	1.248	0.526	0.000	0.004(38)	0.007(5)	0(0)	non tumor-specific	nAS	no
CARD19_LS020	chr9:93112289|93112992:+	CARD19	caspase recruitment domain family member 19	protein coding gene	no	ENST00000375464.6;ENST00000466409.1;ENST00000468781.5;ENST00000490488.5;ENST00000488630.1	56.847	26.986	99.682	0.972(9314)	0.98(688)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
FYN_LS027	chr6:111720062|111780566:-	FYN	FYN proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000368682.7;ENST00000354650.7;ENST00000368667.6;ENST00000523238.5;ENST00000524310.5;ENST00000523574.5;ENST00000518630.5;ENST00000523570.5;ENST00000484067.6;ENST00000521062.5;ENST00000521361.5;ENST00000487824.2	27.492	18.440	39.510	0.954(9136)	0.983(690)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WASHC1_LS0043	chr9:18492|19026:-	WASHC1	WASH complex subunit 1	protein coding gene	no	.	3.604	0.816	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL513210.1_UP_LS0001	chr6:168726237|168726391:+	AL513210.1	-	lncRNA gene	no	.	6.105	0.404	0.000	0.021(202)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_AL023754.1_LS0013	chr1:209533200|209535666:-	AL023754.1	-	lncRNA gene	no	.	2.445	0.207	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	nAS	no
FETUB_LS001	chr3:186636228|186640460:+	FETUB	fetuin B	protein coding gene	no	ENST00000450521.5	2.444	1.798	1.811	0.07(670)	0.073(51)	0.098(1709)	non tumor-specific	exon_skip	yes
SNX1_LS018	chr15:64130029|64130228:+	SNX1	sorting nexin 1	protein coding gene	no	ENST00000560829.5;ENST00000380285.7;ENST00000261889.9;ENST00000559844.5;ENST00000560260.5;ENST00000561026.5	150.126	102.774	123.246	0.995(9534)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_AC098487.1_UP_LS0004	chr4:102450067|102501249:-	AC098487.1	-	lncRNA gene	no	.	1.110	0.790	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
GCN1_LS051	chr12:120176217|120177447:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6;ENST00000548821.1	27.219	17.769	13.402	0.93(8913)	0.962(675)	0.963(16739)	non tumor-specific	alt_3prime	yes
UN_IQCG_LS0029	chr3:197908571|197908645:+	IQCG	IQ motif containing G	protein coding gene	no	.	2.183	0.228	0.000	0.023(224)	0.009(6)	0(0)	non tumor-specific	nAS	no
ZNF320_LS029	chr19:52893619|52897520:-	ZNF320	zinc finger protein 320	protein coding gene	no	ENST00000601334.5;ENST00000601334.5;ENST00000601334.5	0.097	0.143	0.700	0.388(3718)	0.46(323)	0.174(3032)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AC090955.1_UP_LS0004	chr3:5056297|5059934:+	AC090955.1	-	pseudogene	no	.	2.594	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00539_LS0024	chr13:21333081|21345783:+	LINC00539	long intergenic non-protein coding RNA 539	lncRNA gene	no	.	0.761	0.075	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
COQ7_LS006	chr16:19072106|19073921:+	COQ7	coenzyme Q7, hydroxylase	protein coding gene	no	ENST00000321998.9;ENST00000568985.5;ENST00000566110.5;ENST00000569312.5;ENST00000544894.6;ENST00000561858.5;ENST00000569127.1	32.491	20.874	18.828	0.995(9535)	0.997(700)	0.977(16988)	non tumor-specific	alt_5prime;exon_skip	yes
BRF2_LS006	chr8:37847175|37848596:-	BRF2	ZFP36 ring finger protein like 2	protein coding gene	yes	ENST00000220659.10;ENST00000520601.5	33.117	17.670	14.636	0.986(9445)	0.996(699)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_TNFSF12-TNFSF13_LS0032	chr17:7557322|7557433:-	TNFSF12-TNFSF13	TNFSF12-TNFSF13 readthrough	protein coding gene	no	.	1.435	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CPED1_LS0003	chr7:120989870|121046887:+	CPED1	cadherin like and PC-esterase domain containing 1	protein coding gene	no	.	1.317	0.735	0.000	0.008(74)	0.06(42)	0(0)	non tumor-specific	exon_skip	no
EIF2B5_LS001	chr3:184135580|184136612:+	EIF2B5	eukaryotic translation initiation factor 2B subunit epsilon	protein coding gene	no	ENST00000491144.5;ENST00000273783.8;ENST00000649814.1;ENST00000648314.1;ENST00000465218.3;ENST00000432569.2;ENST00000647636.1;ENST00000648890.1;ENST00000648682.1;ENST00000647909.1;ENST00000648599.1;ENST00000649688.1;ENST00000648915.1;ENST00000481054.5;ENST00000492226.2;ENST00000648630.1;ENST00000432982.5;ENST00000468748.6;ENST00000648256.1;ENST00000650270.1;ENST00000491008.6	17.683	10.488	46.800	0.945(9056)	0.943(662)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PHF14_LS012	chr7:11036688|11036985:+	PHF14	PHD finger protein 14	protein coding gene	no	ENST00000642461.1;ENST00000521747.5;ENST00000403050.7;ENST00000423760.6;ENST00000634607.1;ENST00000490957.5	49.975	23.824	20.501	0.99(9489)	0.996(699)	0.977(16989)	non tumor-specific	nAS	yes
AC092142.1_LS002	chr16:82044608|82063093:-	AC092142.1	-	lncRNA gene	no	ENST00000567021.1	3.008	0.882	0.838	0.076(727)	0.077(54)	0.126(2192)	non tumor-specific	nAS	yes
UN_GMDS-DT_LS0033	chr6:2269799|2329283:+	GMDS-DT	GMDS divergent transcript	lncRNA gene	no	.	2.885	0.200	0.000	0.004(37)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CHCHD3_LS0115	chr7:133035074|133035427:+	CHCHD3	coiled-coil-helix-coiled-coil-helix domain containing 3	protein coding gene	no	.	52.971	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE3C_LS0004	chr7:157139161|157139227:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	1.252	0.062	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_UBR4_LS0033	chr1:19081573|19084366:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	.	13.336	5.186	0.000	0.024(229)	0.019(13)	0(0)	non tumor-specific	alt_5prime	no
FAAP24_LS009	chr19:32977316|32977497:+	FAAP24	FA core complex associated protein 24	protein coding gene	no	ENST00000591791.1	0.523	0.011	0.590	0.003(24)	0.001(1)	0(5)	non tumor-specific	nAS	yes
UN_CHURC1-FNTB_LS0098	chr14:64947707|64947787:+	CHURC1-FNTB	CHURC1-FNTB readthrough	protein coding gene	no	.	4.947	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HES2_LS005	chr1:6419153|6419607:-	HES2	hes family bHLH transcription factor 2	protein coding gene	no	ENST00000487437.5	0.083	0.060	0.776	0.071(679)	0.038(27)	0.06(1043)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CELF2_LS023	chr10:11314258|11325836:+	CELF2	CUGBP Elav-like family member 2	protein coding gene	no	.;.	15.214	1.602	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NFATC2_LS0008	chr20:51395570|51395608:+	NFATC2	nuclear factor of activated T cells 2	protein coding gene	yes	.	3.900	0.389	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CACNA2D4_LS0003	chr12:1795780|1795970:-	CACNA2D4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein coding gene	no	.	1.119	0.084	0.000	0.009(82)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
VCP_LS003	chr9:35059219|35059493:-	VCP	valosin containing protein	protein coding gene	no	ENST00000358901.10;ENST00000493886.5;ENST00000479300.1	551.478	305.943	346.265	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AKAP13_LS039	chr15:85718159|85719076:+	AKAP13	A-kinase anchoring protein 13	protein coding gene	yes	ENST00000394518.6;ENST00000361243.6;ENST00000560676.5;ENST00000394510.6;ENST00000560579.5;ENST00000558644.2	18.049	17.119	19.695	0.921(8827)	0.98(688)	0.96(16689)	non tumor-specific	nAS	yes
LINC01192_LS014	chr3:163207757|163220101:-	LINC01192	long intergenic non-protein coding RNA 1192	lncRNA gene	no	ENST00000489012.5	2.293	0.000	0.690	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
ANK3_LS043	chr10:60088358|60105905:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000280772.6;ENST00000373827.6;ENST00000355288.6;ENST00000503366.5;ENST00000616444.4;ENST00000610321.4;ENST00000622427.4;ENST00000467420.6	6.135	16.160	13.674	0.712(6823)	0.937(658)	0.925(16071)	non tumor-specific	alt_3prime	yes
CYP2T1P_LS006	chr19:40810495|40810662:-	CYP2T1P	cytochrome P450 family 2 subfamily T member 1, pseudogene	pseudogene	no	ENST00000432607.2	0.709	0.200	0.699	0.001(7)	0.003(2)	0.015(257)	non tumor-specific	nAS	yes
MEIS1_LS006	chr2:66438062|66439598:+	MEIS1	Meis homeobox 1	protein coding gene	yes	.;.	0.247	0.400	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ARHGEF26_LS005	chr3:154129719|154149389:+	ARHGEF26	Rho guanine nucleotide exchange factor 26	protein coding gene	no	ENST00000356448.8;ENST00000465093.5;ENST00000496710.5	8.073	9.562	12.282	0.603(5775)	0.903(634)	0.903(15691)	non tumor-specific	exon_skip	yes
UN_CD24_LS0098	chr6:106971332|106971520:+	CD24	CD24 molecule	protein coding gene	yes	.	8.434	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CYP4B1_LS0029	chr1:46818781|46818870:-	CYP4B1	cytochrome P450 family 4 subfamily B member 1	protein coding gene	no	.	1.450	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SNX13_LS036	chr7:17897446|17940284:-	SNX13	sorting nexin 13	protein coding gene	no	ENST00000428135.7;ENST00000611725.4;ENST00000409076.6;ENST00000444712.5;ENST00000409604.1;ENST00000475800.5	10.893	9.215	7.058	0.881(8437)	0.947(665)	0.963(16740)	non tumor-specific	exon_skip	yes
CEP131_LS004	chr17:81191084|81191193:-	CEP131	centrosomal protein 131	protein coding gene	no	ENST00000374782.7;ENST00000269392.8;ENST00000570817.5;ENST00000573053.5;ENST00000450824.6;ENST00000575907.5;ENST00000571292.1	17.773	5.756	23.464	0.987(9455)	0.959(673)	0.979(17012)	non tumor-specific	nAS	yes
GTF3C3_LS010	chr2:196776629|196778896:-	GTF3C3	general transcription factor IIIC subunit 3	protein coding gene	no	ENST00000263956.7	23.545	12.398	16.513	0.941(9015)	0.981(689)	0.976(16967)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CD6_LS0023	chr11:61018013|61018292:+	CD6	CD6 molecule	protein coding gene	no	.	7.795	4.157	0.000	0.371(3554)	0.332(233)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_GTF2E2_UP_LS0001	chr8:30712088|30728047:-	GTF2E2	general transcription factor IIE subunit 2	protein coding gene	no	.	0.729	0.152	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL11A2_LS029	chr6:33172103|33172289:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	ENST00000374708.8;ENST00000341947.6;ENST00000361917.5	5.112	1.068	2.526	0.23(2202)	0.103(72)	0.839(14589)	non tumor-specific	nAS	yes
SH3D21_LS031	chr1:36320798|36320915:+	SH3D21	SH3 domain containing 21	protein coding gene	no	ENST00000453908.7;ENST00000505871.6;ENST00000480549.5;ENST00000474766.1;ENST00000453908.7;ENST00000505871.6;ENST00000480549.5;ENST00000474766.1	5.169	2.039	8.780	0.809(7748)	0.769(540)	0.961(16705)	non tumor-specific	alt_3prime;alt_5prime	yes
SUGP1_LS006	chr19:19280291|19296989:-	SUGP1	SURP and G-patch domain containing 1	protein coding gene	no	ENST00000589144.5;ENST00000247001.9;ENST00000591007.6;ENST00000588731.6;ENST00000587119.5	66.900	34.747	48.046	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DNAH10_LS054	chr12:123881813|123887142:+	DNAH10	dynein axonemal heavy chain 10	protein coding gene	no	ENST00000409039.7;ENST00000638045.1	3.352	1.644	1.052	0.013(129)	0.066(46)	0.106(1850)	non tumor-specific	nAS	yes
UN_RF00019_UP_LS0052	chr1:161592242|161677328:+	RF00019	-	small non-coding RNA gene	no	.	23.230	5.357	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02210-CRHR1_LS0039	chr17:45637686|45639369:+	LINC02210-CRHR1	LINC02210-CRHR1 readthrough	protein coding gene	no	.	3.933	0.363	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC022113.1_LS002	chr5:16622032|16625415:+	AC022113.1	-	lncRNA gene	no	ENST00000499131.1	14.159	0.000	0.912	0.008(72)	0(0)	0.242(4207)	non tumor-specific	nAS	yes
UN_AC016651.1_UP_LS0008	chr5:15243767|15425575:-	AC016651.1	-	lncRNA gene	no	.	1.755	0.581	0.000	0.003(30)	0.014(10)	0(0)	non tumor-specific	nAS	no
GAGE1_LS004	chrX:49600844|49603668:+	GAGE1	G antigen 1	protein coding gene	no	ENST00000610680.4;ENST00000381709.6;ENST00000381700.10;ENST00000619375.1	46.024	8.233	0.696	0.106(1016)	0.007(5)	0.021(362)	non tumor-specific	nAS	yes
PPDPFL_LS011	chr8:49074333|49075235:+	PPDPFL	pancreatic progenitor cell differentiation and proliferation factor like	protein coding gene	no	ENST00000399653.8;ENST00000399653.8	1.615	0.190	1.217	0.064(612)	0.057(40)	0.288(5003)	non tumor-specific	alt_3prime;alt_5prime	yes
AC068759.1_LS004	chr3:173336594|173336759:+	AC068759.1	-	lncRNA gene	no	ENST00000447709.1	1.079	0.000	0.813	0(2)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_TTLL5_LS0010	chr14:75651244|75651286:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	.	6.929	0.736	0.000	0.011(110)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ATP5IF1_LS0006	chr1:28236410|28246576:-	ATP5IF1	ATP synthase inhibitory factor subunit 1	protein coding gene	no	.	0.782	0.025	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
MRPL9_LS001	chr1:151760031|151760816:-	MRPL9	mitochondrial ribosomal protein L9	protein coding gene	no	ENST00000468006.1	1.963	0.839	2.192	0.873(8367)	0.87(611)	0.873(15182)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LRRFIP2_LS0023	chr3:37109700|37110991:-	LRRFIP2	LRR binding FLII interacting protein 2	protein coding gene	no	.	2.348	7.340	0.000	0.009(86)	0.026(18)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MLLT10_LS0053	chr10:21713950|21723950:+	MLLT10	MLLT10 histone lysine methyltransferase DOT1L cofactor	protein coding gene	no	.	1.317	0.103	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
PRKD2_LS010	chr19:46691807|46691933:-	PRKD2	protein kinase D2	protein coding gene	no	ENST00000601806.5;ENST00000597390.5;ENST00000291281.8;ENST00000433867.5;ENST00000600194.5;ENST00000599019.5;ENST00000597589.5;ENST00000595515.5	75.736	35.655	50.986	0.996(9543)	0.997(700)	0.979(17017)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC159_LS041	chr19:11351003|11352057:+	CCDC159	coiled-coil domain containing 159	protein coding gene	no	.;.	2.587	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01619_LS0024	chr12:91994794|92141651:-	LINC01619	long intergenic non-protein coding RNA 1619	lncRNA gene	no	.	0.935	0.325	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_SRRM2_LS0300	chr16:2766841|2766905:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	9.410	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
DOP1A_LS026	chr6:83140403|83141921:+	DOP1A	DOP1 leucine zipper like protein A	protein coding gene	no	ENST00000237163.9;ENST00000349129.6;ENST00000369739.7;ENST00000484282.1	14.632	12.362	21.920	0.907(8693)	0.979(687)	0.973(16910)	non tumor-specific	nAS	yes
THADA_LS027	chr2:43485325|43486437:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000469323.5	0.279	0.162	0.948	0.124(1185)	0.187(131)	0.189(3288)	non tumor-specific	intron_retention	yes
UN_GSKIP_LS0009	chr14:96382505|96384171:+	GSKIP	GSK3B interacting protein	protein coding gene	no	.	0.845	0.129	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NOTCH4_LS011	chr6:32201006|32202076:-	NOTCH4	notch receptor 4	protein coding gene	yes	.;.;.	0.775	0.442	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
TMOD2_LS003	chr15:51766567|51768262:+	TMOD2	tropomodulin 2	protein coding gene	no	ENST00000249700.8;ENST00000435126.6	7.292	4.521	4.786	0.639(6126)	0.798(560)	0.924(16068)	non tumor-specific	exon_skip	yes
UN_AL353807.3_UP_LS0046	chr1:155670330|155767444:-	AL353807.3	-	pseudogene	no	.	10.310	0.239	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
USH2A_LS060	chr1:216247226|216250903:-	USH2A	usherin	protein coding gene	no	ENST00000307340.7;ENST00000366942.3	6.131	0.000	0.739	0.004(35)	0(0)	0.019(322)	non tumor-specific	nAS	yes
PAQR6_LS005	chr1:156244789|156245142:-	PAQR6	progestin and adipoQ receptor family member 6	protein coding gene	no	ENST00000612424.4;ENST00000649236.1	0.005	0.006	1.195	0.075(722)	0.007(5)	0.199(3459)	non tumor-specific	alt_3prime;exon_skip	yes
ATP8B1_LS031	chr18:57701313|57704555:-	ATP8B1	ATPase phospholipid transporting 8B1	protein coding gene	no	ENST00000283684.9;ENST00000648908.1;ENST00000642462.1;ENST00000648039.1;ENST00000589147.5;ENST00000591728.1	15.326	24.518	5.935	0.764(7322)	0.954(670)	0.79(13733)	non tumor-specific	alt_3prime;exon_skip	yes
UN_GTPBP8_UP_LS0009	chr3:112814727|112819758:+	GTPBP8	GTP binding protein 8 (putative)	protein coding gene	no	.	1.828	0.462	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
FRMD3_LS005	chr9:83290727|83298748:-	FRMD3	FERM domain containing 3	protein coding gene	no	ENST00000376434.5;ENST00000376438.5;ENST00000304195.7;ENST00000621208.4	6.011	6.831	5.199	0.509(4878)	0.825(579)	0.907(15760)	non tumor-specific	nAS	yes
UBE3B_LS040	chr12:109533558|109533657:+	UBE3B	ubiquitin protein ligase E3B	protein coding gene	no	ENST00000605142.1	0.583	0.473	0.787	0.385(3691)	0.376(264)	0.36(6266)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AC005306.1_UP_LS0003	chr19:1981481|1981714:+	AC005306.1	-	lncRNA gene	no	.	1.506	1.677	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZNF362_LS0025	chr1:33295015|33295231:+	ZNF362	zinc finger protein 362	protein coding gene	no	.	4.749	0.901	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_PLSCR2_LS0012	chr3:146419143|146422111:-	PLSCR2	phospholipid scramblase 2	protein coding gene	no	.	1.059	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
HLA-G_LS012	chr6:29829932|29830378:+	HLA-G	major histocompatibility complex, class I, G	protein coding gene	no	ENST00000376828.6;ENST00000428701.5;ENST00000360323.10;ENST00000478355.5;ENST00000376818.7;ENST00000478519.5;ENST00000376815.3	4.836	7.091	1.778	0.483(4629)	0.536(376)	0.458(7958)	non tumor-specific	nAS	yes
UN_RHOXF1-AS1_LS0013	chrX:120060447|120120852:+	RHOXF1-AS1	RHOXF1 antisense RNA 1	lncRNA gene	no	.	1.300	0.752	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PCDH7_LS007	chr4:30869087|30920153:+	PCDH7	protocadherin 7	protein coding gene	no	ENST00000621961.1	0.001	0.080	0.650	0.134(1282)	0.145(102)	0.003(48)	non tumor-specific	nAS	yes
MCAM_LS002	chr11:119309915|119310349:-	MCAM	melanoma cell adhesion molecule	protein coding gene	no	ENST00000264036.5;ENST00000528533.5;ENST00000525586.5	126.162	95.010	103.760	0.977(9364)	0.991(696)	0.97(16867)	non tumor-specific	alt_3prime;exon_skip	yes
CPSF4_LS027	chr7:99454136|99456432:+	CPSF4	cleavage and polyadenylation specific factor 4	protein coding gene	no	ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1;ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1;ENST00000436336.6;ENST00000451876.5;ENST00000292476.9;ENST00000441580.5;ENST00000452047.1;ENST00000469897.1	39.696	16.541	29.916	0.932(8931)	0.93(653)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LEPROTL1_LS0011	chr8:30099986|30101898:+	LEPROTL1	leptin receptor overlapping transcript like 1	protein coding gene	no	.	1.381	0.339	0.000	0.037(352)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_ITPR2_LS0038	chr12:26428088|26429414:-	ITPR2	inositol 1,4,5-trisphosphate receptor type 2	protein coding gene	no	.	2.114	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NHSL2_LS0015	chrX:72027699|72138441:+	NHSL2	NHS like 2	protein coding gene	no	.	1.783	0.587	0.000	0.011(107)	0.027(19)	0(0)	non tumor-specific	exon_skip	no
UN_AC136475.9_UP_LS0010	chr11:331342|331868:+	AC136475.9	-	lncRNA gene	no	.	3.389	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUBA1C_LS0015	chr12:49265166|49272459:-	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	1.810	0.203	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0272	chr14:104944981|104947952:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.720	0.925	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_NIPA2_LS0028	chr15:22853268|22855501:+	NIPA2	NIPA magnesium transporter 2	protein coding gene	no	.	3.131	0.408	0.000	0.008(80)	0.01(7)	0(0)	non tumor-specific	nAS	no
ENTR1_LS008	chr9:136405202|136407145:-	ENTR1	endosome associated trafficking regulator 1	protein coding gene	no	.;.;.	15.941	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TAF1B_LS0008	chr2:9843908|9845220:+	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B	protein coding gene	no	.	0.799	0.251	0.000	0.011(106)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
GSTZ1_LS028	chr14:77329807|77330310:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000216465.9;ENST00000361389.8;ENST00000554279.5;ENST00000557639.5;ENST00000349555.7;ENST00000556627.5;ENST00000557053.5;ENST00000393734.5;ENST00000555093.1;ENST00000553586.5	80.815	68.300	27.712	0.996(9539)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NKAIN3_LS0021	chr8:62747129|62749703:+	NKAIN3	sodium/potassium transporting ATPase interacting 3	protein coding gene	no	.	1.651	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGLC2_UP_LS0147	chr22:22893805|22899643:+	IGLC2	immunoglobulin lambda constant 2	no	no	.	619.752	20.071	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
POLA1_LS035	chrX:24821583|24826427:+	POLA1	DNA polymerase alpha 1, catalytic subunit	protein coding gene	no	ENST00000379068.7;ENST00000611764.1;ENST00000379059.7;ENST00000494204.1	17.230	6.634	7.379	0.955(9146)	0.967(679)	0.962(16718)	non tumor-specific	alt_5prime	yes
UN_MDS2_LS0001	chr1:23592685|23601956:+	MDS2	myelodysplastic syndrome 2 translocation associated	lncRNA gene	no	.	2.143	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
SLC36A1_LS025	chr5:151479489|151480057:+	SLC36A1	solute carrier family 36 member 1	protein coding gene	no	ENST00000616007.4;ENST00000517628.1	0.217	0.050	0.744	0.14(1339)	0.094(66)	0.073(1265)	non tumor-specific	nAS	yes
ACSS3_LS018	chr12:81233471|81253307:+	ACSS3	acyl-CoA synthetase short chain family member 3	protein coding gene	no	ENST00000548058.5;ENST00000261206.7;ENST00000548324.5	29.726	25.992	11.957	0.702(6722)	0.926(650)	0.927(16112)	non tumor-specific	exon_skip	yes
UN_LRRC20_LS0003	chr10:70300082|70300174:-	LRRC20	leucine rich repeat containing 20	protein coding gene	no	.	3.338	0.256	0.000	0.018(176)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC079226.1_UP_LS0053	chr4:182877760|182880577:-	AC079226.1	-	lncRNA gene	no	.	1.054	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
STX16_LS014	chr20:58667597|58667987:+	STX16	syntaxin 16	protein coding gene	no	ENST00000361830.7;ENST00000458280.5;ENST00000355957.9;ENST00000312283.12;ENST00000412911.5;ENST00000359617.8;ENST00000371141.8;ENST00000476384.5;ENST00000483434.5;ENST00000496117.5;ENST00000371132.8;ENST00000496003.5;ENST00000467096.5;ENST00000358029.8;ENST00000464640.5;ENST00000493301.5;ENST00000468590.1;ENST00000438253.1	30.392	14.681	117.397	0.981(9398)	0.987(693)	0.979(17021)	non tumor-specific	alt_5prime;intron_retention	yes
UN_LINC01999_UP_LS0012	chr17:60552195|60552245:+	LINC01999	long intergenic non-protein coding RNA 1999	lncRNA gene	no	.	1.496	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
LIPM_LS003	chr10:88808415|88813097:+	LIPM	lipase family member M	protein coding gene	no	ENST00000404743.8;ENST00000539337.2	2.660	0.434	11.948	0.014(135)	0.019(13)	0.089(1544)	non tumor-specific	nAS	yes
UN_OSGEP_LS0018	chr14:20451436|20451974:-	OSGEP	O-sialoglycoprotein endopeptidase	protein coding gene	no	.	2.555	0.638	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
JAZF1_LS007	chr7:27895416|27991909:-	JAZF1	JAZF zinc finger 1	protein coding gene	no	ENST00000427814.5;ENST00000283928.9;ENST00000649905.1;ENST00000430432.5;ENST00000447620.5;ENST00000420835.4	18.231	15.149	13.452	0.942(9026)	0.99(695)	0.971(16872)	non tumor-specific	exon_skip	yes
UN_PPP1R21_UP_LS0002	chr2:48420022|48420735:+	PPP1R21	protein phosphatase 1 regulatory subunit 21	protein coding gene	no	.	2.065	0.581	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC109466.1_LS010	chr5:164486741|164523947:+	AC109466.1	-	lncRNA gene	no	ENST00000517508.5	0.976	0.000	0.830	0.003(28)	0(0)	0.016(286)	non tumor-specific	nAS	yes
CPNE8_LS013	chr12:38724899|38730283:-	CPNE8	copine 8	protein coding gene	no	ENST00000331366.9;ENST00000360449.3	10.530	8.011	5.431	0.756(7242)	0.943(662)	0.929(16148)	non tumor-specific	exon_skip	yes
UN_RABGEF1_LS0038	chr7:66711144|66712167:+	RABGEF1	RAB guanine nucleotide exchange factor 1	protein coding gene	no	.	1.657	0.355	0.000	0.039(373)	0.017(12)	0(0)	non tumor-specific	nAS	no
NR2E3_LS008	chr15:71812511|71813389:+	NR2E3	nuclear receptor subfamily 2 group E member 3	protein coding gene	no	ENST00000621736.4;ENST00000617575.4;ENST00000621098.1	1.680	0.178	0.822	0.03(291)	0.014(10)	0.176(3056)	non tumor-specific	nAS	yes
UN_KIAA1109_LS0078	chr4:122348743|122349158:+	KIAA1109	KIAA1109	protein coding gene	no	.	2.221	0.438	0.000	0.016(154)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_PA2G4_LS0004	chr12:56104796|56106588:+	PA2G4	proliferation-associated 2G4	protein coding gene	yes	.	14.450	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
EPS8L3_LS023	chr1:109759117|109759238:-	EPS8L3	EPS8 like 3	protein coding gene	no	ENST00000361852.8;ENST00000369805.7;ENST00000361965.8;ENST00000472325.5;ENST00000494151.1	32.063	21.759	1.387	0.252(2415)	0.171(120)	0.129(2245)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TP63_LS019	chr3:189872995|189880064:+	TP63	symbol withdrawn, see [HGNC:15979](/data/gene-symbol-report/#!/hgnc_id/HGNC:15979)	protein coding gene	yes	ENST00000418709.6;ENST00000437221.5	1.178	0.210	1.335	0.184(1759)	0.164(115)	0.146(2543)	non tumor-specific	nAS	yes
UN_RNA5SP283_UP_LS0002	chr9:62828454|62837267:-	RNA5SP283	RNA, 5S ribosomal pseudogene 283	no	no	.	2.960	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BPTF_LS0038	chr17:67914565|67918714:+	BPTF	bromodomain PHD finger transcription factor	protein coding gene	no	.	2.719	0.553	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_TUSC1_UP_LS0019	chr9:26426589|26440237:-	TUSC1	tumor suppressor candidate 1	protein coding gene	yes	.	0.965	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
PDE4DIP_LS068	chr1:149021153|149024445:+	PDE4DIP	phosphodiesterase 4D interacting protein	protein coding gene	no	ENST00000524974.5;ENST00000585156.5;ENST00000618462.4;ENST00000369356.8;ENST00000369354.7;ENST00000481227.6	1.181	1.847	1.177	0.78(7474)	0.868(609)	0.389(6765)	non tumor-specific	nAS	yes
ANP32E_LS003	chr1:150220761|150223186:-	ANP32E	acidic nuclear phosphoprotein 32 family member E	protein coding gene	no	ENST00000583931.5;ENST00000629042.2;ENST00000616917.4;ENST00000436748.6;ENST00000534437.1;ENST00000369115.3	73.746	33.681	32.675	0.996(9542)	0.994(698)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNF157_LS0049	chr17:76156505|76158393:-	RNF157	ring finger protein 157	protein coding gene	no	.	2.557	0.052	0.000	0.006(57)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_HERC3_LS0013	chr4:88664212|88665855:+	HERC3	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein coding gene	no	.	3.165	0.499	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AF064858.3_LS002	chr21:39008231|39011088:-	AF064858.3	-	lncRNA gene	no	ENST00000419664.1	0.324	0.097	0.704	0.004(35)	0.006(4)	0.025(443)	non tumor-specific	nAS	yes
RAB27B_LS014	chr18:54893056|54893148:+	RAB27B	RAB27B, member RAS oncogene family	protein coding gene	no	ENST00000592334.1	0.525	0.148	0.773	0.209(1999)	0.283(199)	0.118(2046)	non tumor-specific	intron_retention	yes
FOLH1_LS006	chr11:49153927|49154228:-	FOLH1	folate hydrolase 1	protein coding gene	no	ENST00000458311.6;ENST00000256999.6;ENST00000356696.7;ENST00000525826.5;ENST00000340334.11;ENST00000533034.1	33.185	13.789	4.354	0.76(7279)	0.756(531)	0.762(13253)	non tumor-specific	alt_3prime	yes
UN_GALT_LS0004	chr9:34641398|34646677:+	GALT	galactose-1-phosphate uridylyltransferase	protein coding gene	no	.	0.855	1.266	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	nAS	no
KRBA1_LS013	chr7:149720990|149721380:+	KRBA1	KRAB-A domain containing 1	protein coding gene	no	ENST00000319551.12;ENST00000485033.6	1.305	1.107	4.637	0.702(6729)	0.685(481)	0.948(16484)	non tumor-specific	alt_3prime;exon_skip	yes
DSC3_LS004	chr18:30997048|31001618:-	DSC3	desmocollin 3	protein coding gene	yes	ENST00000360428.8;ENST00000434452.5;ENST00000584980.1	48.172	28.080	2.562	0.367(3516)	0.348(244)	0.426(7410)	non tumor-specific	nAS	yes
VWA5A_LS014	chr11:124118411|124118533:+	VWA5A	von Willebrand factor A domain containing 5A	protein coding gene	yes	ENST00000456829.6;ENST00000361352.9;ENST00000449321.5;ENST00000392748.5;ENST00000392744.4	24.150	30.571	18.719	0.938(8991)	0.99(695)	0.968(16824)	non tumor-specific	nAS	yes
UN_FRMD3_LS0047	chr9:83311975|83312595:-	FRMD3	FERM domain containing 3	protein coding gene	no	.	1.164	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HSD17B6_LS0005	chr12:56752581|56773834:+	HSD17B6	hydroxysteroid 17-beta dehydrogenase 6	protein coding gene	no	.	1.505	0.042	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
FXYD5_LS017	chr19:35158400|35159516:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	ENST00000392218.6	0.016	0.015	0.657	0.134(1281)	0.095(67)	0.048(838)	non tumor-specific	nAS	yes
CENPK_LS010	chr5:65541436|65542802:-	CENPK	centromere protein K	protein coding gene	no	ENST00000510768.5	0.025	0.010	0.607	0.132(1265)	0.017(12)	0.033(568)	non tumor-specific	exon_skip	yes
NIPAL3_LS025	chr1:24464120|24466004:+	NIPAL3	NIPA like domain containing 3	protein coding gene	no	ENST00000339255.2;ENST00000339255.2	9.833	4.516	3.016	0.847(8112)	0.873(613)	0.808(14039)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
INTS8_LS041	chr8:94872002|94873374:+	INTS8	integrator complex subunit 8	protein coding gene	yes	ENST00000524333.5;ENST00000523731.5;ENST00000343161.8;ENST00000523206.5;ENST00000520526.5;ENST00000519736.5;ENST00000521155.5;ENST00000523352.1	27.330	10.329	42.499	0.996(9544)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PPP4C_LS0021	chr16:30083759|30085116:-	PPP4C	protein phosphatase 4 catalytic subunit	protein coding gene	no	.	1.361	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP5C_LS0004	chr19:46350950|46353748:+	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	.	2.503	0.399	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_OSBPL9_LS0040	chr1:51781709|51782559:+	OSBPL9	oxysterol binding protein like 9	protein coding gene	no	.	1.257	0.506	0.000	0.009(87)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RCN1P2_UP_LS0004	chr13:45411938|45433864:-	RCN1P2	reticulocalbin 1 pseudogene 2	pseudogene	no	.	3.737	2.137	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDK14_LS015	chr7:90709610|90709816:+	CDK14	cyclin dependent kinase 14	protein coding gene	yes	ENST00000496279.5	0.070	0.005	0.762	0.014(131)	0.009(6)	0.027(475)	non tumor-specific	exon_skip;intron_retention	yes
HMOX2_LS003	chr16:4474847|4505484:+	HMOX2	heme oxygenase 2	protein coding gene	no	ENST00000575051.5;ENST00000406590.6;ENST00000575051.5;ENST00000406590.6	0.101	0.097	0.748	0.495(4743)	0.333(234)	0.158(2753)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ADAMTS7P1_LS004	chr15:82304404|82305733:+	ADAMTS7P1	ADAMTS7 pseudogene 1	pseudogene	no	ENST00000614978.4	0.325	0.000	0.775	0.002(16)	0(0)	0.016(278)	non tumor-specific	nAS	yes
UN_HVCN1_LS0023	chr12:110661448|110677548:-	HVCN1	hydrogen voltage gated channel 1	protein coding gene	no	.	1.165	0.144	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL390729.2_UP_LS0002	chr1:112891892|112895893:-	AL390729.2	-	pseudogene	no	.	4.198	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL449403.2_UP_LS0006	chr9:96182761|96183799:-	AL449403.2	-	lncRNA gene	no	.	2.215	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
SNHG20_LS008	chr17:77089271|77094070:+	SNHG20	small nucleolar RNA host gene 20	lncRNA gene	no	ENST00000565256.1	0.142	0.098	0.690	0.412(3950)	0.386(271)	0.006(110)	non tumor-specific	nAS	yes
MUSK_LS001	chr9:110668983|110682674:+	MUSK	muscle associated receptor tyrosine kinase	protein coding gene	no	ENST00000374448.8;ENST00000416899.7;ENST00000189978.10;ENST00000374440.7	1.502	0.952	1.415	0.013(126)	0.098(69)	0.238(4131)	non tumor-specific	nAS	yes
WDR93_LS007	chr15:89716949|89722055:+	WDR93	WD repeat domain 93	protein coding gene	no	ENST00000268130.11;ENST00000560294.5	1.808	1.538	0.905	0.09(859)	0.172(121)	0.215(3740)	non tumor-specific	nAS	yes
ZNF19_LS002	chr16:71476272|71478228:-	ZNF19	zinc finger protein 19	protein coding gene	no	ENST00000288177.9;ENST00000565637.5;ENST00000565100.6;ENST00000569717.5;ENST00000564230.5;ENST00000565541.5;ENST00000568815.5	3.327	2.082	3.153	0.714(6845)	0.811(569)	0.898(15603)	non tumor-specific	nAS	yes
UN_CAPN1_LS0149	chr11:65211510|65211644:-	CAPN1	calpain 1	protein coding gene	no	.	6.671	3.069	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RASEF_LS0001	chr9:82982777|82990391:-	RASEF	RAS and EF-hand domain containing	protein coding gene	no	.	6.638	0.260	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
LRP4_LS038	chr11:46896018|46896210:-	LRP4	LDL receptor related protein 4	protein coding gene	no	ENST00000378623.5	9.487	4.652	3.073	0.53(5075)	0.651(457)	0.787(13686)	non tumor-specific	nAS	yes
RAB40B_LS020	chr17:82664556|82698472:-	RAB40B	RAB40B, member RAS oncogene family	protein coding gene	no	.;.	1.751	0.249	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HIC2_LS0002	chr22:21420761|21444922:+	HIC2	HIC ZBTB transcriptional repressor 2	protein coding gene	no	.	0.912	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
PLXNB2_LS052	chr22:50286287|50287111:-	PLXNB2	plexin B2	protein coding gene	no	ENST00000359337.8;ENST00000449103.5;ENST00000359337.8;ENST00000449103.5	76.357	60.359	62.636	0.873(8364)	0.892(626)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FAM30B_UP_LS0005	chr15:19972239|19986634:+	FAM30B	family with sequence similarity 30 member B	pseudogene	no	.	3.836	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC022031.2_LS0028	chr18:55781999|55784899:+	AC022031.2	-	lncRNA gene	no	.	1.397	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DVL2_LS0004	chr17:7225782|7225958:+	DVL2	dishevelled segment polarity protein 2	protein coding gene	no	.	2.034	0.219	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
SCRN3_LS022	chr2:174396293|174398366:+	SCRN3	secernin 3	protein coding gene	no	.;.	0.618	0.414	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL732372.2_LS008	chr1:485208|494992:-	AL732372.2	-	pseudogene	no	ENST00000601814.5	0.041	0.026	0.665	0.375(3593)	0.338(237)	0.019(332)	non tumor-specific	nAS	yes
AC073332.1_LS001	chr7:17144788|17150120:-	AC073332.1	-	lncRNA gene	no	ENST00000646331.1	2.106	0.573	0.000	0.027(258)	0.007(5)	0(0)	non tumor-specific	nAS	yes
UN_WNK2_LS0018	chr9:93253043|93256334:-	WNK2	WNK lysine deficient protein kinase 2	protein coding gene	yes	.	1.144	0.810	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SYNPO_LS001	chr5:150601188|150618103:+	SYNPO	synaptopodin	protein coding gene	no	ENST00000394243.5	1.429	0.375	0.985	0.429(4112)	0.528(371)	0.312(5417)	non tumor-specific	exon_skip	yes
AC099489.1_LS070	chr16:11516307|11518900:-	AC099489.1	-	protein coding gene	no	ENST00000598234.6	1.453	0.000	0.812	0.001(11)	0(0)	0.18(3126)	non tumor-specific	nAS	yes
DAB1-AS1_LS015	chr1:57875188|57876731:+	DAB1-AS1	DAB1 antisense RNA 1	lncRNA gene	no	ENST00000608580.5	0.142	0.000	0.613	0.001(5)	0(0)	0.001(13)	non tumor-specific	nAS	yes
AC010096.1_LS001	chr2:19459320|19468354:-	AC010096.1	-	lncRNA gene	no	ENST00000443897.1	0.036	0.002	0.585	0.003(30)	0.006(4)	0.001(17)	non tumor-specific	nAS	yes
ADAMTS7P4_LS018	chr15:85319995|85330078:-	ADAMTS7P4	ADAMTS7 pseudogene 4	pseudogene	no	ENST00000558365.1	0.579	0.207	0.828	0.195(1867)	0.204(143)	0.186(3228)	non tumor-specific	nAS	yes
MORF4L1_LS009	chr15:78873839|78878213:+	MORF4L1	mortality factor 4 like 1	protein coding gene	no	ENST00000559690.5	0.006	0.005	0.669	0.2(1918)	0.175(123)	0.107(1868)	non tumor-specific	alt_5prime	yes
AC104389.4_LS012	chr11:5595350|5624826:-	AC104389.4	-	protein coding gene	no	ENST00000394793.3	1.068	0.109	0.706	0.006(57)	0.006(4)	0.102(1780)	non tumor-specific	exon_skip	yes
FER1L6_LS001	chr8:123852185|123955992:+	FER1L6	fer-1 like family member 6	protein coding gene	no	ENST00000522917.5	0.509	1.017	0.727	0.001(11)	0.067(47)	0.001(25)	non tumor-specific	nAS	yes
POLR3H_LS009	chr22:41532157|41540699:-	POLR3H	RNA polymerase III subunit H	protein coding gene	no	ENST00000337566.9;ENST00000337566.9	0.393	0.422	0.952	0.86(8240)	0.876(615)	0.464(8057)	non tumor-specific	alt_3prime;exon_skip	yes
BTD_LS017	chr3:15631495|15635424:+	BTD	biotinidase	protein coding gene	no	ENST00000437172.5	0.222	0.015	0.602	0.003(32)	0.001(1)	0.017(296)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CREG1_UP_LS0005	chr1:167617833|167629538:-	CREG1	cellular repressor of E1A stimulated genes 1	protein coding gene	no	.	2.394	0.075	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC02354_LS003	chr12:47831453|47832154:+	LINC02354	long intergenic non-protein coding RNA 2354	lncRNA gene	no	ENST00000550720.5	0.475	0.000	0.569	0.001(9)	0(0)	0.001(23)	non tumor-specific	nAS	yes
CAPN3_LS013	chr15:42402135|42402794:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000357568.7;ENST00000349748.7;ENST00000397163.7;ENST00000638141.1	0.507	0.582	3.129	0.443(4246)	0.611(429)	0.916(15927)	non tumor-specific	alt_5prime	yes
AF228730.5_LS002	chr8:7109616|7112356:+	AF228730.5	-	pseudogene	no	ENST00000641436.1;ENST00000649959.1	3.242	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_PHACTR1_LS0051	chr6:13267835|13272590:-	PHACTR1	phosphatase and actin regulator 1	protein coding gene	no	.	1.084	0.163	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	nAS	no
SPEF1_LS001	chr20:3778319|3778421:-	SPEF1	sperm flagellar 1	protein coding gene	no	ENST00000471499.5;ENST00000463490.1;ENST00000379756.3	3.993	3.151	1.894	0.412(3950)	0.476(334)	0.423(7347)	non tumor-specific	intron_retention	yes
UN_AC012184.2_LS0037	chr16:70330004|70366799:+	AC012184.2	-	protein coding gene	no	.	13.520	1.396	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC00298_LS0012	chr2:8055024|8060348:-	LINC00298	long intergenic non-protein coding RNA 298	lncRNA gene	no	.	1.013	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU2-53P_UP_LS0012	chr15:53129389|53193628:+	RNU2-53P	RNA, U2 small nuclear 53, pseudogene	small non-coding RNA gene	no	.	2.569	1.129	0.000	0.009(82)	0.017(12)	0(0)	non tumor-specific	nAS	no
TTN_LS367	chr2:178789497|178789978:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5;ENST00000360870.9	5.895	23.424	11.995	0.007(66)	0.026(18)	0.116(2023)	non tumor-specific	exon_skip	yes
DNAH14_LS033	chr1:225082739|225085544:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000430092.5;ENST00000439375.6	4.232	0.122	0.836	0.01(94)	0.001(1)	0.223(3878)	non tumor-specific	alt_3prime	yes
UN_PYGL_LS0007	chr14:50912303|50914701:-	PYGL	glycogen phosphorylase L	protein coding gene	no	.	3.084	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
SMIM8_LS013	chr6:87391835|87392725:+	SMIM8	small integral membrane protein 8	protein coding gene	no	ENST00000369572.3	0.764	0.434	0.797	0.053(511)	0.06(42)	0.289(5017)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_TUBA1C_UP_LS0127	chr12:49129573|49186685:+	TUBA1C	tubulin alpha 1c	protein coding gene	no	.	101.894	7.642	0.000	0.04(381)	0.013(9)	0(0)	non tumor-specific	nAS	no
MRPL30_LS008	chr2:99195189|99195573:+	MRPL30	mitochondrial ribosomal protein L30	protein coding gene	no	ENST00000338148.7;ENST00000465432.1;ENST00000409841.1	52.143	24.839	34.895	0.996(9547)	0.993(697)	0.979(17019)	non tumor-specific	nAS	yes
UN_RGL2_LS0027	chr6:33294762|33294996:-	RGL2	ral guanine nucleotide dissociation stimulator like 2	protein coding gene	no	.	5.593	0.993	0.000	0.03(289)	0.024(17)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
MAPKAPK5_LS026	chr12:111889000|111890040:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	ENST00000550735.6	40.870	20.816	36.206	0.991(9492)	0.989(694)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRPC7_LS005	chr5:136231549|136247471:-	TRPC7	transient receptor potential cation channel subfamily M member 2	protein coding gene	no	ENST00000513104.5;ENST00000514963.5;ENST00000378459.7;ENST00000503275.6;ENST00000502753.4;ENST00000352189.8	5.032	0.000	1.074	0.01(100)	0(0)	0.05(861)	non tumor-specific	nAS	yes
UN_WDR70_LS0004	chr5:37392120|37393542:+	WDR70	WD repeat domain 70	protein coding gene	no	.	10.445	0.593	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPGRIP1_LS014	chr14:21321300|21321854:+	RPGRIP1	RPGR interacting protein 1	protein coding gene	no	ENST00000553500.5	0.239	0.000	0.686	0.001(14)	0(0)	0.031(538)	non tumor-specific	nAS	yes
DPY19L2_LS013	chr12:63597910|63600306:-	DPY19L2	dpy-19 like 2	protein coding gene	no	ENST00000324472.8;ENST00000439061.6;ENST00000306389.7;ENST00000541083.1	1.926	1.420	2.920	0.283(2711)	0.486(341)	0.717(12463)	non tumor-specific	exon_skip	yes
LINC02289_LS001	chr14:77070846|77071710:-	LINC02289	long intergenic non-protein coding RNA 2289	lncRNA gene	no	ENST00000557526.1	0.753	0.016	0.693	0.001(6)	0.001(1)	0.029(507)	non tumor-specific	nAS	yes
EFCAB13_LS001	chr17:47323541|47328269:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000518170.1	0.436	0.116	0.775	0.111(1060)	0.14(98)	0.078(1354)	non tumor-specific	nAS	yes
LINC02529_LS001	chr6:159383777|159393209:+	LINC02529	long intergenic non-protein coding RNA 2529	lncRNA gene	no	ENST00000649001.1;ENST00000429657.1	0.080	0.000	0.651	0.001(8)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_NOL9_LS0035	chr1:6523342|6525104:+	NOL9	nucleolar protein 9	protein coding gene	no	.	0.864	0.382	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC008763.2_LS008	chr19:7632049|7638726:+	AC008763.2	-	protein coding gene	no	ENST00000599243.5	0.081	0.052	0.663	0.007(68)	0.003(2)	0.044(770)	non tumor-specific	nAS	yes
SH3GL2_LS005	chr9:17786524|17787380:+	SH3GL2	SH3 domain containing GRB2 like 2, endophilin A1	protein coding gene	no	ENST00000380607.4	11.290	23.730	3.189	0.249(2382)	0.519(364)	0.462(8036)	non tumor-specific	exon_skip	yes
NEDD4L_LS042	chr18:58335537|58341038:+	NEDD4L	NEDD4 like E3 ubiquitin protein ligase	protein coding gene	yes	ENST00000400345.7;ENST00000456986.5;ENST00000357895.9;ENST00000431212.6;ENST00000635997.1	24.265	32.176	3.229	0.856(8200)	0.936(657)	0.527(9154)	non tumor-specific	exon_skip	yes
RPS6KB1_LS027	chr17:59935300|59936215:+	RPS6KB1	ribosomal protein S6 kinase B1	protein coding gene	no	ENST00000393021.7;ENST00000472940.5;ENST00000443572.6;ENST00000406116.7;ENST00000225577.8	26.595	16.042	20.612	0.976(9349)	0.993(697)	0.978(17002)	non tumor-specific	alt_3prime;exon_skip	yes
NRN1_LS004	chr6:6002497|6003703:-	NRN1	neuritin 1	protein coding gene	no	.;.	2.828	1.194	0.000	0.094(899)	0.051(36)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
PSPH_LS032	chr7:56034154|56051138:-	PSPH	phosphoserine phosphatase	protein coding gene	no	ENST00000395471.7;ENST00000419984.6;ENST00000395471.7;ENST00000419984.6	8.227	3.928	3.442	0.955(9151)	0.977(686)	0.908(15775)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PTPRA_LS0021	chr20:2905446|2923207:+	PTPRA	protein tyrosine phosphatase receptor type A	protein coding gene	no	.	1.646	0.487	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PPARGC1A_UP_LS0007	chr4:24323443|24327939:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	.	7.913	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CATIP-AS2_LS0005	chr2:218347881|218351160:-	CATIP-AS2	CATIP antisense RNA 2	lncRNA gene	no	.	3.258	0.817	0.000	0.008(74)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_KIAA0930_LS0035	chr22:45197216|45197538:-	KIAA0930	KIAA0930	protein coding gene	no	.	5.268	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DMKN_LS066	chr19:35508240|35509911:-	DMKN	dermokine	protein coding gene	no	ENST00000434389.5;ENST00000467637.5;ENST00000419602.5;ENST00000443640.5;ENST00000498211.5;ENST00000483855.5;ENST00000493979.5;ENST00000464709.6;ENST00000464894.5;ENST00000462538.5;ENST00000447113.6;ENST00000458071.5;ENST00000424570.6	1.656	1.965	5.408	0.79(7568)	0.906(636)	0.874(15184)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SLC35B3_LS0014	chr6:8425200|8427937:-	SLC35B3	solute carrier family 35 member B3	protein coding gene	no	.	17.952	2.929	0.000	0.019(182)	0.016(11)	0(0)	non tumor-specific	alt_3prime	no
UN_CCDC30_LS0007	chr1:42463898|42473122:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	.	2.570	0.986	0.000	0.057(543)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_ZNF236_LS0059	chr18:76967678|76967717:+	ZNF236	zinc finger protein 236	protein coding gene	no	.	10.859	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DAP3_LS025	chr1:155731415|155736946:+	DAP3	DLG associated protein 3	protein coding gene	no	ENST00000490249.5	0.031	0.027	1.238	0.465(4455)	0.571(401)	0.71(12348)	non tumor-specific	exon_skip	yes
CDK5_LS009	chr7:151056636|151056736:-	CDK5	cyclin dependent kinase 5	protein coding gene	no	ENST00000485972.5;ENST00000297518.4;ENST00000487703.5	59.273	25.867	19.538	0.996(9539)	0.997(700)	0.979(17011)	non tumor-specific	exon_skip	yes
HCG25_LS005	chr6:33250711|33251578:+	HCG25	HLA complex group 25	lncRNA gene	no	ENST00000427196.1	0.029	0.035	0.673	0.299(2864)	0.245(172)	0.068(1188)	non tumor-specific	nAS	yes
MYBL2_LS003	chr20:43673899|43682794:+	MYBL2	MYB proto-oncogene like 2	protein coding gene	no	ENST00000396863.8	0.997	0.870	0.839	0.469(4497)	0.144(101)	0.074(1289)	non tumor-specific	exon_skip;mutex_exons	yes
UN_NSUN7_LS0028	chr4:40799228|40800131:+	NSUN7	NOP2/Sun RNA methyltransferase family member 7	protein coding gene	no	.	1.592	0.218	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM63B_LS0041	chr6:44153977|44155201:-	TMEM63B	transmembrane protein 63B	protein coding gene	no	.	2.145	2.251	0.000	0.007(69)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_ZNF652_LS0004	chr17:49293653|49298106:-	ZNF652	zinc finger protein 652	protein coding gene	no	.	1.114	0.064	0.000	0.01(100)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
CLNK_LS010	chr4:10528094|10532256:-	CLNK	cytokine dependent hematopoietic cell linker	protein coding gene	no	ENST00000226951.10;ENST00000442825.6	7.376	0.994	0.830	0.027(257)	0.165(116)	0.076(1314)	non tumor-specific	alt_3prime;exon_skip	yes
SPATA3_LS011	chr2:231004118|231012590:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000452881.5	1.198	0.000	0.722	0(1)	0(0)	0.003(48)	non tumor-specific	exon_skip	yes
UN_TFR2_LS0022	chr7:100631052|100631714:-	TFR2	transferrin receptor 2	protein coding gene	no	.	3.862	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_HERC2P9_LS0073	chr15:28682102|28684129:+	HERC2P9	hect domain and RLD 2 pseudogene 9	pseudogene	no	.	4.894	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNKSR3_LS0034	chr6:154450258|154477927:-	CNKSR3	CNKSR family member 3	protein coding gene	no	.	3.158	0.505	0.000	0.052(494)	0.036(25)	0(0)	non tumor-specific	nAS	no
UN_HLA-DRB6_UP_LS0004	chr6:32584283|32664883:-	HLA-DRB6	major histocompatibility complex, class II, DR beta 6 (pseudogene)	pseudogene	no	.	23.246	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
STRA8_LS007	chr7:135251869|135255114:+	STRA8	stimulated by retinoic acid 8	protein coding gene	no	ENST00000275764.3	22.575	0.350	1.057	0.036(341)	0.004(3)	0.12(2083)	non tumor-specific	alt_3prime;exon_skip	yes
ATXN1_LS001	chr6:16306859|16326394:-	ATXN1	ataxin 1	protein coding gene	no	ENST00000244769.8;ENST00000436367.5	7.216	6.450	8.603	0.915(8766)	0.976(685)	0.972(16892)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CELSR1_LS0147	chr22:46466599|46466878:+	CELSR1	cadherin EGF LAG seven-pass G-type receptor 1	protein coding gene	no	.	2.285	0.675	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC242852.1_UP_LS0007	chr1:121572983|121596565:+	AC242852.1	-	pseudogene	no	.	1.324	0.032	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ASAP1_LS0021	chr8:130115735|130115818:-	ASAP1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1	protein coding gene	no	.	1.772	0.274	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
SIRT5_LS016	chr6:13588464|13591669:+	SIRT5	sirtuin 5	protein coding gene	no	ENST00000359782.8;ENST00000379262.8;ENST00000606117.1	29.379	20.689	17.180	0.984(9423)	0.99(695)	0.979(17011)	non tumor-specific	exon_skip	yes
ACADVL_LS037	chr17:7223875|7223968:+	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	ENST00000543245.6;ENST00000356839.9;ENST00000322910.9;ENST00000350303.9;ENST00000583858.5;ENST00000542255.6;ENST00000579546.1;ENST00000583850.5;ENST00000583074.5	287.200	258.564	797.603	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_BBOX1-AS1_LS0001	chr11:27063060|27151050:-	BBOX1-AS1	BBOX1 antisense RNA 1	lncRNA gene	no	.	1.642	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
KLHDC4_LS025	chr16:87748809|87750237:-	KLHDC4	kelch domain containing 4	protein coding gene	no	ENST00000316853.10	0.297	0.162	0.692	0.007(64)	0.006(4)	0.036(618)	non tumor-specific	exon_skip	yes
UN_DDX58_LS0029	chr9:32493942|32498312:-	DDX58	DExD/H-box helicase 58	protein coding gene	yes	.	1.081	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	exon_skip	no
SYNPO_LS007	chr5:150650303|150656404:+	SYNPO	synaptopodin	protein coding gene	no	ENST00000307662.4	46.606	64.414	29.200	0.952(9118)	0.996(699)	0.944(16416)	non tumor-specific	alt_5prime;exon_skip	yes
SP100_LS050	chr2:230541372|230541892:+	SP100	SP100 nuclear antigen	protein coding gene	yes	ENST00000340126.8;ENST00000431952.1;ENST00000494901.5;ENST00000488180.1	7.479	4.607	11.722	0.948(9083)	0.984(691)	0.952(16539)	non tumor-specific	alt_3prime;exon_skip	yes
UN_C20orf96_LS0013	chr20:278429|278611:-	C20orf96	chromosome 20 open reading frame 96	protein coding gene	no	.	2.929	0.084	0.000	0.006(57)	0.001(1)	0(0)	non tumor-specific	nAS	no
CFAP46_LS010	chr10:132814612|132814686:-	CFAP46	cilia and flagella associated protein 46	protein coding gene	no	ENST00000368586.9	5.597	3.086	7.119	0.038(364)	0.148(104)	0.343(5958)	non tumor-specific	nAS	yes
UN_LINC01348_LS0009	chr1:235068159|235068296:-	LINC01348	long intergenic non-protein coding RNA 1348	lncRNA gene	no	.	3.115	0.660	0.000	0.008(73)	0.03(21)	0(0)	non tumor-specific	nAS	no
CCT7_LS009	chr2:73234384|73242973:+	CCT7	chaperonin containing TCP1 subunit 7	protein coding gene	no	ENST00000473786.5	0.186	0.027	0.641	0.025(236)	0.023(16)	0.01(176)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TRPS1_UP_LS0009	chr8:115818823|115818957:-	TRPS1	transcriptional repressor GATA binding 1	protein coding gene	no	.	13.334	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CST5_LS001	chr20:23876271|23877505:-	CST5	cystatin D	protein coding gene	yes	ENST00000304710.4	2.503	2.306	1.644	0.216(2073)	0.38(267)	0.132(2301)	non tumor-specific	nAS	yes
ZNF620_LS004	chr3:40506376|40508656:+	ZNF620	zinc finger protein 620	protein coding gene	no	ENST00000433723.2	0.331	0.141	0.709	0.158(1518)	0.209(147)	0.177(3078)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TAF15_LS0248	chr17:35844770|35844858:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	13.151	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
LCT_LS002	chr2:135789798|135790658:-	LCT	lactase	protein coding gene	no	ENST00000264162.6	8.631	1.853	0.880	0.04(386)	0.023(16)	0.06(1043)	non tumor-specific	nAS	yes
STXBP5L_LS023	chr3:121282337|121318475:+	STXBP5L	syntaxin binding protein 5 like	protein coding gene	no	ENST00000273666.10;ENST00000497029.5;ENST00000492541.5;ENST00000471262.1	1.123	0.415	2.275	0.014(131)	0.007(5)	0.087(1512)	non tumor-specific	exon_skip	yes
ALDH3A2_LS036	chr17:19673275|19675562:+	ALDH3A2	aldehyde dehydrogenase 3 family member A2	protein coding gene	no	.;.;.	8.406	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
MIR2052HG_LS013	chr8:74758150|74768036:+	MIR2052HG	MIR2052 host gene	lncRNA gene	no	ENST00000521762.1	1.499	0.176	0.722	0.048(462)	0.02(14)	0.018(307)	non tumor-specific	exon_skip	yes
DNAH17_LS029	chr17:78451673|78453343:-	DNAH17	dynein axonemal heavy chain 17	protein coding gene	no	ENST00000591369.5;ENST00000585328.5;ENST00000389840.6;ENST00000586052.5;ENST00000592152.1	2.216	1.067	1.804	0.186(1779)	0.17(119)	0.271(4704)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL355490.1_LS0001	chr10:97334971|97338075:+	AL355490.1	-	no	no	.	0.913	0.064	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
RPL23A_LS007	chr17:28720328|28720414:+	RPL23A	ribosomal protein L23a	protein coding gene	no	ENST00000394935.7	0.522	0.044	0.490	0.063(602)	0.006(4)	0.009(152)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC022613.1_LS0004	chr15:29676015|29677176:+	AC022613.1	-	lncRNA gene	no	.	2.501	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2J1_LS008	chr6:89343756|89352539:-	UBE2J1	ubiquitin conjugating enzyme E2 J1	protein coding gene	no	ENST00000435041.2	19.200	14.658	28.019	0.96(9196)	0.98(688)	0.979(17015)	non tumor-specific	alt_5prime;exon_skip	yes
YIF1A_LS010	chr11:66285536|66287598:-	YIF1A	Yip1 interacting factor homolog A, membrane trafficking protein	protein coding gene	no	ENST00000528575.1;ENST00000528575.1	0.483	0.570	1.367	0.567(5429)	0.598(420)	0.642(11158)	non tumor-specific	alt_3prime;exon_skip	yes
TBC1D19_LS007	chr4:26585184|26613169:+	TBC1D19	TBC1 domain family member 19	protein coding gene	no	ENST00000513596.1	0.001	0.000	0.641	0.134(1283)	0.175(123)	0.004(69)	non tumor-specific	nAS	yes
UN_ZNF7_LS0015	chr8:144831999|144837391:+	ZNF7	zinc finger protein 7	protein coding gene	no	.	2.788	0.247	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
JAZF1-AS1_LS001	chr7:28180539|28185670:+	JAZF1-AS1	JAZF1 antisense RNA 1	lncRNA gene	no	ENST00000455963.5;ENST00000436758.1	0.931	0.446	1.541	0.107(1021)	0.134(94)	0.612(10639)	non tumor-specific	nAS	yes
UN_WDR4_LS0039	chr21:42848514|42848546:-	WDR4	WD repeat domain 4	protein coding gene	no	.	7.633	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLCN7_LS0088	chr16:1456206|1456764:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	.	5.711	0.887	0.000	0.068(649)	0.031(22)	0(0)	non tumor-specific	exon_skip	no
COL6A6_LS035	chr3:130645002|130658676:+	COL6A6	collagen type VI alpha 6 chain	protein coding gene	no	ENST00000506143.5	1.256	0.315	0.963	0.001(10)	0.003(2)	0.092(1600)	non tumor-specific	exon_skip	yes
RFPL2_LS008	chr22:32194490|32202333:-	RFPL2	ret finger protein like 2	protein coding gene	no	ENST00000248983.8;ENST00000400237.2	0.151	0.015	1.089	0.04(383)	0.046(32)	0.051(893)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HS1BP3_LS0012	chr2:20596585|20597352:+	HS1BP3	HCLS1 binding protein 3	protein coding gene	no	.	4.019	1.046	0.000	0.021(203)	0.027(19)	0(0)	non tumor-specific	nAS	no
SUPT16H_LS016	chr14:21363503|21364827:-	SUPT16H	SPT16 homolog, facilitates chromatin remodeling subunit	protein coding gene	no	ENST00000216297.6	71.894	40.398	38.959	0.975(9346)	0.993(697)	0.979(17014)	non tumor-specific	alt_5prime	yes
UN_SSRP1_LS0030	chr11:57333149|57333438:-	SSRP1	structure specific recognition protein 1	protein coding gene	no	.	41.301	1.989	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
NME4_LS024	chr16:399480|399627:+	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	ENST00000397722.5;ENST00000620944.4;ENST00000448828.5;ENST00000444498.5;ENST00000460297.1;ENST00000382940.8;ENST00000219479.6;ENST00000433358.5;ENST00000450036.1	323.176	165.075	156.127	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
DNAH7_LS017	chr2:195816963|195817696:-	DNAH7	dynein axonemal heavy chain 7	protein coding gene	no	ENST00000312428.10	2.635	2.077	1.440	0.182(1743)	0.345(242)	0.393(6839)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KHSRP_LS0140	chr19:6424542|6424683:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	.	1.837	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
AL139383.1_LS005	chr13:33511407|33519958:-	AL139383.1	-	lncRNA gene	no	ENST00000437698.1	0.160	0.000	0.709	0.001(8)	0(0)	0.002(31)	non tumor-specific	nAS	yes
FXYD3_LS016	chr19:35118599|35119363:+	FXYD3	FXYD domain containing ion transport regulator 3	protein coding gene	no	ENST00000604621.5;ENST00000604621.5;ENST00000604621.5	1.253	3.485	2.712	0.491(4708)	0.621(436)	0.369(6416)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
DNAJC14_LS003	chr12:55822732|55823070:-	DNAJC14	DnaJ heat shock protein family (Hsp40) member C14	protein coding gene	no	ENST00000317269.7;ENST00000357606.7;ENST00000317287.5;ENST00000646577.1	85.452	46.753	36.627	0.988(9466)	0.996(699)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_SCAMP2_LS0014	chr15:74844097|74844255:+	SCAMP2	secretory carrier membrane protein 2	protein coding gene	no	.	2.688	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
GRIPAP1_LS006	chrX:48978435|48981215:-	GRIPAP1	GRIP1 associated protein 1	protein coding gene	no	ENST00000619149.4;ENST00000593475.5;ENST00000622599.4;ENST00000376423.8;ENST00000619107.1;ENST00000473581.5;ENST00000611757.4	68.958	37.730	62.330	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
MYO18A_LS067	chr17:29125967|29127852:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000533420.3	0.311	0.500	2.507	0.083(792)	0.162(114)	0.68(11827)	non tumor-specific	exon_skip	yes
UN_MGAT1_UP_LS0012	chr5:180828474|180829937:-	MGAT1	monoacylglycerol O-acyltransferase 1	protein coding gene	no	.	2.191	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRIM28_LS0071	chr19:58548374|58549390:-	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	1.764	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SLC25A14_LS006	chrX:130340353|130345182:+	SLC25A14	solute carrier family 25 member 14	protein coding gene	no	ENST00000545805.5;ENST00000424447.5;ENST00000218197.9;ENST00000467496.5	0.843	0.738	1.670	0.629(6030)	0.605(425)	0.732(12717)	non tumor-specific	alt_5prime;exon_skip	yes
ANKFN1_LS023	chr17:56372840|56374601:+	ANKFN1	ankyrin repeat and fibronectin type III domain containing 1	protein coding gene	no	ENST00000635860.1;ENST00000318698.6;ENST00000566473.6	3.237	1.566	1.113	0.102(982)	0.068(48)	0.316(5500)	non tumor-specific	nAS	yes
UN_NPIPB2_LS0017	chr16:11942114|11956144:-	NPIPB2	nuclear pore complex interacting protein family member B2	protein coding gene	no	.	0.760	0.050	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PATL2_LS008	chr15:44668482|44668980:-	PATL2	PAT1 homolog 2	protein coding gene	no	ENST00000560775.5;ENST00000434130.5;ENST00000560780.1	1.966	1.129	1.152	0.198(1895)	0.115(81)	0.436(7573)	non tumor-specific	intron_retention	yes
UN_MTMR12_LS0023	chr5:32239168|32242057:-	MTMR12	myotubularin related protein 12	protein coding gene	no	.	3.605	0.881	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
NXNL2_LS010	chr9:88537797|88544379:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	.;.	2.816	0.277	0.000	0.013(122)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ZNF431_LS013	chr19:21175474|21182623:+	ZNF431	zinc finger protein 431	protein coding gene	no	ENST00000600692.5	0.080	0.075	1.198	0.167(1596)	0.255(179)	0.437(7604)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MAPK8_LS0010	chr10:48410168|48420203:+	MAPK8	mitogen-activated protein kinase 8	protein coding gene	no	.	3.371	0.717	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NDRG4_LS017	chr16:58495008|58499144:+	NDRG4	NDRG family member 4	protein coding gene	yes	ENST00000569578.5;ENST00000421602.6	0.000	0.009	1.225	0.044(421)	0.037(26)	0.054(941)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PPP2CB_LS0069	chr8:30812463|30812562:-	PPP2CB	protein phosphatase 2 catalytic subunit beta	protein coding gene	yes	.	1.638	0.860	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL845552.2_LS001	chr14:100539211|100540130:+	AL845552.2	-	lncRNA gene	no	ENST00000553301.1	0.200	0.080	0.852	0.178(1704)	0.168(118)	0.149(2598)	non tumor-specific	nAS	yes
ARFGAP2_LS030	chr11:47173840|47175015:-	ARFGAP2	ADP ribosylation factor GTPase activating protein 2	protein coding gene	no	ENST00000524782.5;ENST00000395449.7;ENST00000525314.5;ENST00000527097.5;ENST00000530596.5	41.554	35.205	59.872	0.991(9492)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AHRR_LS0053	chr5:418904|420029:+	AHRR	aryl-hydrocarbon receptor repressor	protein coding gene	yes	.	6.126	1.133	0.000	0.006(55)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
NWD1_LS017	chr19:16765192|16773126:+	NWD1	NACHT and WD repeat domain containing 1	protein coding gene	no	ENST00000518676.5;ENST00000524140.6;ENST00000549814.5;ENST00000646016.1;ENST00000379808.7;ENST00000438489.6;ENST00000552788.1	2.992	2.121	1.801	0.186(1786)	0.33(232)	0.343(5968)	non tumor-specific	nAS	yes
ZFP1_LS005	chr16:75148662|75152909:+	ZFP1	ZFP1 zinc finger protein	protein coding gene	no	ENST00000393430.6	0.038	0.058	0.680	0.36(3453)	0.426(299)	0.221(3835)	non tumor-specific	alt_5prime	yes
UN_TACC2_LS0016	chr10:122079058|122082647:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	.	1.719	0.351	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
KIRREL1_LS004	chr1:157993728|158084422:+	KIRREL1	kirre like nephrin family adhesion molecule 1	protein coding gene	no	ENST00000368173.7	0.104	0.061	0.609	0.084(802)	0.067(47)	0.054(933)	non tumor-specific	exon_skip	yes
UN_UEVLD_LS0009	chr11:18547024|18558228:-	UEVLD	UEV and lactate/malate dehyrogenase domains	protein coding gene	no	.	3.425	0.114	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_NCKAP5_LS0058	chr2:133527185|133559050:-	NCKAP5	NCK associated protein 5	protein coding gene	no	.	1.005	0.206	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
BUD23_LS014	chr7:73687095|73690916:+	BUD23	BUD23 rRNA methyltransferase and ribosome maturation factor	protein coding gene	no	ENST00000265758.6;ENST00000441822.5;ENST00000463307.5;ENST00000430270.5;ENST00000423497.5	210.542	99.704	100.129	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CYP2E1_LS010	chr10:133527572|133532124:+	CYP2E1	cytochrome P450 family 2 subfamily E member 1	protein coding gene	no	ENST00000418356.1;ENST00000418356.1	0.272	0.045	0.757	0.051(490)	0.083(58)	0.006(97)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_UBC_LS0807	chr12:124913182|124913574:+	UBC	ubiquitin C	protein coding gene	no	.	77.473	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HK3_LS0011	chr5:176884134|176885812:-	HK3	hook microtubule tethering protein 3	protein coding gene	no	.	2.069	0.093	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NISCH_LS0043	chr3:52487475|52487515:+	NISCH	nischarin	protein coding gene	no	.	22.069	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CELF2_LS0064	chr10:11329097|11332558:+	CELF2	CUGBP Elav-like family member 2	protein coding gene	no	.	7.700	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
DNAJC14_LS006	chr12:55828714|55829141:-	DNAJC14	DnaJ heat shock protein family (Hsp40) member C14	protein coding gene	no	ENST00000546957.1	5.151	3.553	2.653	0.891(8541)	0.899(631)	0.885(15382)	non tumor-specific	alt_5prime	yes
LINC01623_LS002	chr6:28863536|28864318:-	LINC01623	long intergenic non-protein coding RNA 1623	lncRNA gene	no	ENST00000606624.1	0.116	0.031	0.718	0.016(152)	0.014(10)	0.001(20)	non tumor-specific	nAS	yes
UN_PHBP15_UP_LS0001	chr7:74746403|75199701:-	PHBP15	prohibitin pseudogene 15	pseudogene	no	.	0.801	0.220	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TTLL5_LS0022	chr14:75680767|75681545:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	.	1.561	0.397	0.000	0.023(217)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
UN_CCT6P3_LS0021	chr7:65068813|65069661:+	CCT6P3	chaperonin containing TCP1 subunit 6 pseudogene 3	pseudogene	no	.	1.720	0.447	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IQCA1_LS0018	chr2:236337883|236350562:+	IQCA1	IQ motif containing with AAA domain 1	protein coding gene	no	.	0.414	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC44A4_LS0044	chr6:31869249|31869544:-	SLC44A4	solute carrier family 44 member 4	protein coding gene	no	.	32.603	7.309	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SMG1P3_LS0042	chr16:21516631|21519828:-	SMG1P3	SMG1 pseudogene 3	pseudogene	no	.	11.245	1.337	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PPP4R3A_LS0008	chr14:91462873|91465250:-	PPP4R3A	protein phosphatase 4 regulatory subunit 3A	protein coding gene	no	.	10.797	1.491	0.000	0.011(106)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
RNF38_LS010	chr9:36369932|36375934:-	RNF38	ring finger protein 38	protein coding gene	no	ENST00000259605.10;ENST00000353739.8;ENST00000357058.7;ENST00000350199.8;ENST00000377885.6;ENST00000491349.5;ENST00000484621.1	17.200	13.809	13.700	0.928(8893)	0.97(681)	0.975(16941)	non tumor-specific	exon_skip	yes
FRMD8_LS003	chr11:65387121|65389385:+	FRMD8	FERM domain containing 8	protein coding gene	no	ENST00000526201.1	6.765	2.503	0.844	0.783(7499)	0.728(511)	0.413(7180)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SH2D3A_LS0025	chr19:6760987|6763705:-	SH2D3A	SH2 domain containing 3A	protein coding gene	no	.	4.483	0.347	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TOX4_LS009	chr14:21477592|21487451:+	TOX4	TOX high mobility group box family member 4	protein coding gene	no	ENST00000455138.1	6.519	5.232	0.642	0.466(4467)	0.527(370)	0.042(733)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DENND1A_LS0056	chr9:123652123|123655043:-	DENND1A	DENN domain containing 1A	protein coding gene	no	.	3.522	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BBIP1_LS008	chr10:110901612|110907680:-	BBIP1	BBSome interacting protein 1	protein coding gene	no	ENST00000454061.5	0.197	0.527	1.572	0.811(7767)	0.865(607)	0.746(12967)	non tumor-specific	exon_skip	yes
CAP2_LS013	chr6:17507650|17539336:+	CAP2	serpin family B member 8	protein coding gene	no	ENST00000611958.4	0.089	0.007	0.548	0.002(18)	0.001(1)	0.002(36)	non tumor-specific	nAS	yes
TMEM255A_LS012	chrX:120285215|120287154:-	TMEM255A	transmembrane protein 255A	protein coding gene	no	ENST00000371369.8;ENST00000371369.8;ENST00000371369.8	11.752	2.864	2.115	0.442(4233)	0.654(459)	0.674(11711)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AL513479.1_UP_LS0017	chr1:38594240|38596516:-	AL513479.1	-	pseudogene	no	.	2.289	0.156	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
SHANK1_LS012	chr19:50688968|50689197:-	SHANK1	SH3 and multiple ankyrin repeat domains 1	protein coding gene	no	ENST00000391813.5;ENST00000293441.5;ENST00000391814.5;ENST00000359082.3	1.594	3.185	1.816	0.146(1399)	0.038(27)	0.358(6220)	non tumor-specific	alt_3prime	yes
OR2L13_LS002	chr1:248098775|248099358:+	OR2L13	symbol withdrawn, see [HGNC:19578](/data/gene-symbol-report/#!/hgnc_id/HGNC:19578)	protein coding gene	no	ENST00000358120.3;ENST00000641714.1	0.518	0.198	1.759	0.118(1134)	0.132(93)	0.159(2757)	non tumor-specific	nAS	yes
UN_COL5A2_UP_LS0007	chr2:189225332|189337875:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	.	2.264	0.211	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
GTF2IP12_LS013	chr4:119445027|119445312:-	GTF2IP12	general transcription factor IIi pseudogene 12	pseudogene	no	ENST00000634317.1	1.362	0.530	0.728	0.004(35)	0.007(5)	0.259(4494)	non tumor-specific	nAS	yes
UN_MXRA7_LS0043	chr17:76685159|76688113:-	MXRA7	matrix remodeling associated 7	protein coding gene	no	.	15.933	5.012	0.000	0.014(130)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PTPRJ_LS0003	chr11:47981008|48069121:+	PTPRJ	protein tyrosine phosphatase receptor type J	protein coding gene	yes	.	0.891	0.374	0.000	0.061(584)	0.093(65)	0(0)	non tumor-specific	nAS	no
UN_STK11IP_LS0020	chr2:219612584|219613128:+	STK11IP	serine/threonine kinase 11 interacting protein	protein coding gene	no	.	1.978	0.056	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
COL11A2_LS006	chr6:33165816|33165931:-	COL11A2	collagen type XI alpha 2 chain	protein coding gene	no	ENST00000374708.8;ENST00000341947.6;ENST00000361917.5	6.561	1.186	3.427	0.304(2911)	0.14(98)	0.913(15868)	non tumor-specific	alt_3prime	yes
UN_WASH2P_UP_LS0009	chr2:113584136|113588550:+	WASH2P	WASP family homolog 2, pseudogene	pseudogene	no	.	2.927	2.663	0.000	0.867(8304)	0.917(644)	0(0)	non tumor-specific	nAS	no
NLK_LS007	chr17:28163628|28168448:+	NLK	nemo like kinase	protein coding gene	no	ENST00000407008.7;ENST00000496808.1	25.257	22.915	14.120	0.977(9358)	0.996(699)	0.978(16998)	non tumor-specific	exon_skip	yes
UN_AL451069.3_UP_LS0019	chr10:132508929|132511156:-	AL451069.3	-	lncRNA gene	no	.	1.488	0.088	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCOA7_LS0029	chr6:125882501|125885159:+	NCOA7	nuclear receptor coactivator 7	protein coding gene	no	.	2.567	1.375	0.000	0.018(175)	0.023(16)	0(0)	non tumor-specific	alt_5prime	no
UN_LRRC37A3_UP_LS0011	chr17:64927539|64929914:-	LRRC37A3	leucine rich repeat containing 37 member A3	protein coding gene	no	.	1.425	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
RYR2_LS014	chr1:237445522|237454391:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	2.899	1.998	1.718	0.027(257)	0.118(83)	0.412(7159)	non tumor-specific	nAS	yes
UN_GABRP_LS0051	chr5:170779558|170779726:-	GABRP	gamma-aminobutyric acid type A receptor subunit pi	protein coding gene	no	.	0.770	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MREG_LS0014	chr2:215955684|215996306:-	MREG	melanoregulin	protein coding gene	no	.	2.651	0.629	0.000	0.021(198)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_LRRC4C_LS0021	chr11:41037149|41101824:-	LRRC4C	leucine rich repeat containing 4C	protein coding gene	no	.	2.512	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
DDT_LS001	chr22:23971623|23973105:-	DDT	D-dopachrome tautomerase	protein coding gene	no	ENST00000428792.1	0.283	0.215	1.515	0.855(8188)	0.816(573)	0.744(12938)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
XPO5_LS027	chr6:43558591|43560178:-	XPO5	exportin 5	protein coding gene	yes	ENST00000265351.11	24.269	9.764	12.795	0.917(8789)	0.963(676)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
UN_POM121L14P_UP_LS0027	chr6:57837886|57845540:+	POM121L14P	POM121 transmembrane nucleoporin like 14, pseudogene	pseudogene	no	.	2.757	0.331	0.000	0.007(71)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SIRPA_LS0014	chr20:1895526|1915159:+	SIRPA	signal regulatory protein alpha	protein coding gene	no	.	4.074	1.243	0.000	0.039(376)	0.044(31)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ATF1_LS0005	chr12:50766147|50780140:+	ATF1	glial cell derived neurotrophic factor	protein coding gene	yes	.	6.669	0.562	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NEDD1_LS032	chr12:96943762|96944639:+	NEDD1	NEDD1 gamma-tubulin ring complex targeting factor	protein coding gene	no	ENST00000266742.8;ENST00000429527.6;ENST00000411739.6;ENST00000557644.5;ENST00000457368.2	27.825	14.147	11.166	0.968(9271)	0.98(688)	0.971(16879)	non tumor-specific	alt_3prime	yes
UN_RAB19_LS0008	chr7:140407811|140411874:+	RAB19	RAB19, member RAS oncogene family	protein coding gene	no	.	1.977	0.367	0.000	0.011(109)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_TCFL5_LS0026	chr20:62852722|62852815:-	TCFL5	transcription factor like 5	protein coding gene	no	.	5.420	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
USE1_LS005	chr19:17215851|17215992:+	USE1	unconventional SNARE in the ER 1	protein coding gene	no	ENST00000263897.9;ENST00000600970.5;ENST00000595101.5;ENST00000596136.5;ENST00000445667.6;ENST00000593597.1	84.646	45.868	54.270	0.996(9545)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TRIOBP_LS0096	chr22:37751401|37751772:+	TRIOBP	TRIO and F-actin binding protein	protein coding gene	no	.	0.849	0.200	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
FBXO25_LS002	chr8:407066|413073:+	FBXO25	F-box protein 25	protein coding gene	yes	ENST00000350302.7;ENST00000352684.2;ENST00000382824.5	5.617	5.560	12.804	0.975(9340)	0.994(698)	0.975(16945)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HGSNAT_LS0001	chr8:43140614|43146954:+	HGSNAT	heparan-alpha-glucosaminide N-acetyltransferase	protein coding gene	no	.	2.363	0.690	0.000	0.004(34)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
TRIP11_LS002	chr14:91972861|91974627:-	TRIP11	thyroid hormone receptor interactor 11	protein coding gene	no	ENST00000267622.8;ENST00000554357.5	38.141	25.721	17.993	0.974(9330)	0.981(689)	0.978(16991)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ERV3-1_LS001	chr7:64993414|65006541:-	ERV3-1	endogenous retrovirus group 3 member 1, envelope	protein coding gene	no	ENST00000394323.2	8.884	6.371	8.239	0.873(8366)	0.85(597)	0.948(16482)	non tumor-specific	nAS	yes
UN_VDR_LS0052	chr12:47907023|47942863:-	VDR	vitamin D receptor	protein coding gene	yes	.	1.559	2.791	0.000	0.003(25)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
PITPNC1_LS015	chr17:67687184|67692572:+	PITPNC1	phosphatidylinositol transfer protein cytoplasmic 1	protein coding gene	no	ENST00000299954.13;ENST00000580974.5;ENST00000578527.1	14.208	10.300	42.444	0.979(9383)	0.983(690)	0.979(17021)	non tumor-specific	exon_skip	yes
AUTS2_LS042	chr7:70787431|70789748:+	AUTS2	activator of transcription and developmental regulator AUTS2	protein coding gene	no	ENST00000644939.1;ENST00000406775.6;ENST00000342771.9;ENST00000644506.1;ENST00000644359.1;ENST00000615871.4;ENST00000611706.4;ENST00000647140.1;ENST00000418686.1;ENST00000646193.1	28.579	18.396	20.379	0.954(9141)	0.986(692)	0.967(16808)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_RBM23_LS0004	chr14:22897527|22901206:+	RBM23	RNA binding motif protein 23	protein coding gene	no	.	1.074	0.230	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
RNF141_LS007	chr11:10534205|10540753:-	RNF141	ring finger protein 141	protein coding gene	no	ENST00000533412.5	0.015	0.030	0.664	0.448(4291)	0.534(375)	0.023(399)	non tumor-specific	nAS	yes
UN_ST6GALNAC5_LS0018	chr1:76996871|77044204:+	ST6GALNAC5	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein coding gene	no	.	2.166	0.383	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PRSS8_LS0081	chr16:31132113|31132205:+	PRSS8	serine protease 8	protein coding gene	no	.	5.037	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
NFAT5_LS024	chr16:69677335|69684890:+	NFAT5	nuclear factor of activated T cells 5	protein coding gene	no	ENST00000567990.5;ENST00000567239.5;ENST00000563474.2	2.265	1.335	2.243	0.48(4595)	0.67(470)	0.796(13844)	non tumor-specific	alt_3prime;exon_skip	yes
TRAT1_LS002	chr3:108822934|108838934:+	TRAT1	T cell receptor associated transmembrane adaptor 1	protein coding gene	no	ENST00000426646.1	0.042	0.081	0.677	0.013(123)	0.007(5)	0.004(78)	non tumor-specific	exon_skip	yes
CASP10_LS008	chr2:201195948|201200443:+	CASP10	caspase 10	protein coding gene	no	ENST00000374650.7	0.549	0.471	1.233	0.564(5403)	0.652(458)	0.562(9762)	non tumor-specific	alt_3prime	yes
CSNK1G3_LS017	chr5:123604830|123614342:+	CSNK1G3	casein kinase 1 gamma 3	protein coding gene	no	ENST00000361991.6;ENST00000515322.2	15.124	10.402	6.169	0.954(9140)	0.963(676)	0.839(14588)	non tumor-specific	exon_skip	yes
UN_FKBP10_LS0075	chr17:41822274|41822421:-	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	.	6.715	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP000879.1_UP_LS0016	chr11:70270424|70271545:-	AP000879.1	-	lncRNA gene	no	.	1.784	0.698	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF4_LS011	chr4:2471109|2497007:+	RNF4	ring finger protein 4	protein coding gene	no	ENST00000503123.5	0.003	0.009	0.652	0.121(1160)	0.137(96)	0.035(607)	non tumor-specific	exon_skip	yes
OXR1_LS026	chr8:106740495|106742222:+	OXR1	oxidation resistance 1	protein coding gene	no	ENST00000531443.5;ENST00000517566.6;ENST00000442977.6;ENST00000435082.1;ENST00000312046.10;ENST00000519415.6;ENST00000449762.6;ENST00000297447.10;ENST00000521592.5;ENST00000521864.1	52.779	49.954	42.435	0.992(9502)	0.997(700)	0.978(17004)	non tumor-specific	exon_skip;intron_retention	yes
YY1AP1_LS021	chr1:155672757|155675010:-	YY1AP1	YY1 associated protein 1	protein coding gene	yes	ENST00000466366.1	0.033	0.037	1.049	0.738(7071)	0.778(546)	0.598(10394)	non tumor-specific	nAS	yes
UN_MAGED1_LS0157	chrX:51901791|51901840:-	MAGED1	MAGE family member D1	protein coding gene	no	.	9.015	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UBE2J2_LS006	chr1:1257310|1262170:-	UBE2J2	ubiquitin conjugating enzyme E2 J2	protein coding gene	no	ENST00000477894.5	0.047	0.042	0.719	0.239(2294)	0.152(107)	0.165(2860)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ODR4_LS0005	chr1:186379884|186383060:+	ODR4	odr-4 GPCR localization factor homolog	protein coding gene	no	.	3.628	1.416	0.000	0.023(220)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GLIPR1L1_LS0005	chr12:75341118|75345489:-	GLIPR1L1	GLIPR1 like 1	protein coding gene	no	.	1.216	0.306	0.000	0.006(62)	0.01(7)	0(0)	non tumor-specific	nAS	no
CFI_LS002	chr4:109741110|109742491:-	CFI	complement factor I	protein coding gene	no	ENST00000504853.3;ENST00000394634.6;ENST00000394635.7;ENST00000512148.5	93.497	133.722	22.364	0.963(9229)	0.989(694)	0.931(16184)	non tumor-specific	alt_3prime	yes
TNIP1_LS031	chr5:151042961|151045861:-	TNIP1	TNFAIP3 interacting protein 1	protein coding gene	no	ENST00000520931.5;ENST00000389378.6;ENST00000610874.4;ENST00000315050.11;ENST00000523338.5;ENST00000610535.5;ENST00000522226.5;ENST00000519339.5;ENST00000521591.5;ENST00000518977.5;ENST00000524280.5;ENST00000523200.5;ENST00000521782.1	84.457	83.295	133.150	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CUEDC2_LS0012	chr10:102425195|102431375:-	CUEDC2	CUE domain containing 2	protein coding gene	no	.	3.033	0.294	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FAM206A_LS001	chr9:108934565|108935638:+	FAM206A	actin binding transcription modulator	protein coding gene	no	ENST00000322940.10;ENST00000466200.1;ENST00000374624.7	8.126	5.216	16.245	0.955(9146)	0.962(675)	0.978(16997)	non tumor-specific	exon_skip;intron_retention	yes
TTC13_LS001	chr1:230907019|230908712:-	TTC13	tetratricopeptide repeat domain 13	protein coding gene	no	ENST00000366661.8;ENST00000366662.8	26.714	10.367	20.747	0.979(9382)	0.986(692)	0.979(17016)	non tumor-specific	nAS	yes
UN_GRIP1_LS0013	chr12:66596927|66630225:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	.	0.566	0.103	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_CALN1_LS0016	chr7:72278810|72403199:-	CALN1	calneuron 1	protein coding gene	no	.	2.991	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
DLL1_LS004	chr6:170285135|170285254:-	DLL1	delta like canonical Notch ligand 1	protein coding gene	no	ENST00000366756.3	15.020	9.502	17.014	0.855(8191)	0.972(682)	0.949(16498)	non tumor-specific	nAS	yes
UN_RPS6P12_UP_LS0006	chr9:82831126|82886139:-	RPS6P12	ribosomal protein S6 pseudogene 12	pseudogene	no	.	4.065	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SORD_LS0022	chr15:45072403|45073365:+	SORD	sorbitol dehydrogenase	protein coding gene	no	.	16.258	13.055	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
UN_MXRA8_LS0086	chr1:1354232|1354312:-	MXRA8	matrix remodeling associated 8	protein coding gene	no	.	60.734	6.994	0.000	0.006(56)	0.009(6)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
BRPF3_LS016	chr6:36218010|36222168:+	BRPF3	bromodomain and PHD finger containing 3	protein coding gene	no	ENST00000357641.10;ENST00000339717.11;ENST00000449261.6;ENST00000534400.5	31.849	25.986	18.452	0.965(9246)	0.987(693)	0.978(16992)	non tumor-specific	exon_skip	yes
AMIGO1_LS002	chr1:109508999|109509420:-	AMIGO1	adhesion molecule with Ig like domain 1	protein coding gene	no	ENST00000369864.4	1.442	1.917	3.145	0.731(7006)	0.879(617)	0.863(14995)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TAF11L11_LS0001	chr5:17604478|17604706:+	TAF11L11	TATA-box binding protein associated factor 11 like 11	protein coding gene	no	.	8.982	0.000	0.000	0.005(48)	0(0)	0(0)	non tumor-specific	nAS	no
DIAPH3_LS010	chr13:59861536|59879229:-	DIAPH3	diaphanous related formin 3	protein coding gene	no	ENST00000400324.8;ENST00000377908.6;ENST00000400319.5;ENST00000400320.5;ENST00000267215.8;ENST00000465066.5;ENST00000498416.2	8.560	2.317	1.809	0.731(7007)	0.551(387)	0.458(7961)	non tumor-specific	exon_skip	yes
VPS72_LS014	chr1:151185950|151190005:-	VPS72	vacuolar protein sorting 72 homolog	protein coding gene	no	ENST00000491094.6;ENST00000368892.8;ENST00000354473.4;ENST00000640458.1;ENST00000471423.1	60.453	29.047	43.490	0.998(9558)	0.996(699)	0.979(17019)	non tumor-specific	alt_5prime;exon_skip	yes
DENND1A_LS011	chr9:123437832|123440360:-	DENND1A	DENN domain containing 1A	protein coding gene	no	ENST00000479305.5	0.102	0.017	0.725	0.022(210)	0.017(12)	0.028(488)	non tumor-specific	nAS	yes
UN_PDK2_UP_LS0001	chr17:50093579|50094342:+	PDK2	pyruvate dehydrogenase kinase 2	protein coding gene	no	.	4.272	0.439	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01499_LS004	chr11:41720914|41734672:+	LINC01499	long intergenic non-protein coding RNA 1499	lncRNA gene	no	ENST00000530379.1	0.374	0.000	0.880	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
UN_AC008663.1_LS0010	chr5:173563544|173568466:+	AC008663.1	-	lncRNA gene	no	.	6.151	0.968	0.000	0.025(243)	0.105(74)	0(0)	non tumor-specific	nAS	no
UN_F13B_LS0018	chr1:197063078|197067160:-	F13B	coagulation factor XIII B chain	protein coding gene	no	.	1.656	0.393	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RASL11A_LS0004	chr13:27271718|27273336:+	RASL11A	RAS like family 11 member A	protein coding gene	yes	.	5.048	0.178	0.000	0.003(26)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_LAMC3_LS0016	chr9:131054420|131056929:+	LAMC3	laminin subunit gamma 3	protein coding gene	no	.	1.184	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
XYLB_LS021	chr3:38400985|38412936:+	XYLB	xylulokinase	protein coding gene	no	ENST00000207870.7;ENST00000424034.5;ENST00000649234.1	5.097	3.543	2.061	0.702(6723)	0.689(484)	0.79(13737)	non tumor-specific	nAS	yes
PNPT1_LS013	chr2:55647453|55654900:-	PNPT1	polyribonucleotide nucleotidyltransferase 1	protein coding gene	no	ENST00000447944.6;ENST00000415374.5;ENST00000260604.8;ENST00000415489.1	39.205	18.447	26.641	0.986(9448)	0.99(695)	0.975(16948)	non tumor-specific	alt_3prime;exon_skip	yes
KCNQ2_LS043	chr20:63446837|63463684:-	KCNQ2	potassium voltage-gated channel subfamily Q member 2	protein coding gene	no	ENST00000637193.1	14.508	0.000	1.149	0.001(6)	0(0)	0.033(574)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC091132.3_UP_LS0003	chr17:45490400|45503261:+	AC091132.3	-	lncRNA gene	no	.	0.892	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AC138150.2_LS002	chr17:45171182|45171539:-	AC138150.2	-	lncRNA gene	no	ENST00000589451.1	0.248	0.089	0.724	0.227(2178)	0.164(115)	0.156(2703)	non tumor-specific	nAS	yes
AC007663.1_LS006	chr22:20307961|20309290:+	AC007663.1	-	pseudogene	no	ENST00000438948.1	4.861	1.282	1.326	0.038(362)	0.028(20)	0.229(3982)	non tumor-specific	nAS	yes
UN_GBAP1_LS0047	chr1:155218942|155227382:-	GBAP1	glucosylceramidase beta pseudogene 1	pseudogene	no	.	1.898	0.305	0.000	0.03(292)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_CSGALNACT2_LS0009	chr10:43150143|43154897:+	CSGALNACT2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein coding gene	no	.	1.346	0.189	0.000	0.013(127)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_RBM14-RBM4_LS0007	chr11:66617550|66623901:+	RBM14-RBM4	RBM14-RBM4 readthrough	protein coding gene	no	.	1.249	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SERP1_LS0030	chr3:150546248|150546439:+	SERP1	stress associated endoplasmic reticulum protein 1	protein coding gene	no	.	0.866	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KCNQ2_LS013	chr20:63414193|63414903:-	KCNQ2	potassium voltage-gated channel subfamily Q member 2	protein coding gene	no	ENST00000626839.2;ENST00000629676.2;ENST00000625514.2;ENST00000629241.2;ENST00000370224.5;ENST00000637193.1;ENST00000359125.6;ENST00000357249.6;ENST00000360480.7;ENST00000629318.1	3.930	3.017	19.144	0.115(1098)	0.024(17)	0.227(3940)	non tumor-specific	alt_3prime	yes
UN_MAP4K3_LS0027	chr2:39282554|39283703:-	MAP4K3	mitogen-activated protein kinase kinase kinase kinase 3	protein coding gene	no	.	0.649	0.011	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CEP164_LS023	chr11:117380714|117381701:+	CEP164	centrosomal protein 164	protein coding gene	no	ENST00000533675.5	1.433	1.084	1.227	0.165(1578)	0.135(95)	0.65(11303)	non tumor-specific	alt_3prime;alt_5prime	yes
ABI3BP_LS080	chr3:100862385|100864002:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000483129.5	0.287	0.348	1.866	0.355(3399)	0.689(484)	0.515(8944)	non tumor-specific	exon_skip	yes
UN_YWHAE_LS0057	chr17:1345117|1345153:+	YWHAE	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon	protein coding gene	no	.	20.561	1.666	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
NXF4_LS005	chrX:102562900|102563019:+	NXF4	nuclear RNA export factor 4 pseudogene	pseudogene	no	ENST00000360035.6;ENST00000416098.1	0.271	0.000	0.730	0(1)	0(0)	0.023(402)	non tumor-specific	nAS	yes
HUWE1_LS056	chrX:53588534|53589547:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12	36.555	24.797	14.823	0.834(7992)	0.937(658)	0.965(16770)	non tumor-specific	nAS	yes
TCEA1_LS017	chr8:54003092|54010430:-	TCEA1	transcription elongation factor A1 pseudogene 2	protein coding gene	no	ENST00000521086.6	0.070	0.070	1.145	0.123(1179)	0.087(61)	0.382(6635)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
HPCA_LS001	chr1:32886119|32888878:+	HPCA	hippocalcin	protein coding gene	no	ENST00000480118.5	0.392	0.322	5.563	0.043(411)	0.007(5)	0.128(2227)	non tumor-specific	exon_skip	yes
RRBP1_LS052	chr20:17658944|17659695:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.	18.584	3.463	0.000	0.013(127)	0.01(7)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ABCC1_LS041	chr16:16131935|16134350:+	ABCC1	ATP binding cassette subfamily C member 1	protein coding gene	no	ENST00000399410.7;ENST00000399408.6;ENST00000572882.2	62.473	30.285	22.318	0.978(9367)	0.976(685)	0.973(16920)	non tumor-specific	exon_skip	yes
SIGIRR_LS001	chr11:406059|406142:-	SIGIRR	single Ig and TIR domain containing	protein coding gene	no	ENST00000528845.5	0.061	0.203	3.888	0.868(8313)	0.865(607)	0.921(16006)	non tumor-specific	alt_5prime;intron_retention	yes
UN_ACTB_LS0456	chr7:5529684|5530524:-	ACTB	actin beta	protein coding gene	no	.	635.929	102.588	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
MRPL9_LS022	chr1:151763146|151763327:-	MRPL9	mitochondrial ribosomal protein L9	protein coding gene	no	ENST00000368830.7;ENST00000467306.5;ENST00000368829.3;ENST00000478926.5;ENST00000486707.5;ENST00000481777.5;ENST00000461182.1;ENST00000462783.1	51.768	24.845	38.328	0.983(9419)	0.991(696)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_AC106886.2_LS0006	chr16:30744462|30748206:+	AC106886.2	-	lncRNA gene	no	.	3.319	0.259	0.000	0.02(190)	0.004(3)	0(0)	non tumor-specific	nAS	no
PPARGC1A_LS012	chr4:23824384|23824463:-	PPARGC1A	PPARG coactivator 1 alpha	protein coding gene	no	ENST00000506055.5;ENST00000612355.1	1.196	0.848	1.533	0.332(3179)	0.697(489)	0.557(9684)	non tumor-specific	alt_3prime	yes
CCDC77_LS017	chr12:430736|431866:+	CCDC77	coiled-coil domain containing 77	protein coding gene	no	ENST00000540180.5;ENST00000422000.5;ENST00000543504.5;ENST00000540344.5;ENST00000239830.8;ENST00000412006.6	6.807	3.383	5.741	0.903(8652)	0.909(638)	0.961(16696)	non tumor-specific	exon_skip	yes
SLC22A12_LS020	chr11:64600938|64601488:+	SLC22A12	solute carrier family 22 member 12	protein coding gene	no	ENST00000377567.6;ENST00000377574.5;ENST00000377572.5;ENST00000473690.5;ENST00000336464.7	5.721	115.919	1.004	0.084(806)	0.212(149)	0.049(850)	non tumor-specific	alt_3prime;exon_skip	yes
UN_REPIN1_UP_LS0003	chr7:150342337|150343528:+	REPIN1	replication initiator 1	protein coding gene	no	.	2.503	0.260	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_INF2_LS0044	chr14:104712992|104713202:+	INF2	inverted formin 2	protein coding gene	no	.	9.386	2.091	0.000	0.006(54)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PPM1N_LS010	chr19:45500066|45500456:+	PPM1N	protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)	protein coding gene	no	ENST00000401705.5;ENST00000456399.6;ENST00000396737.6;ENST00000451287.6;ENST00000415077.1;ENST00000396735.6;ENST00000401593.5;ENST00000396736.2	5.977	1.341	3.931	0.855(8194)	0.848(595)	0.897(15598)	non tumor-specific	alt_5prime;exon_skip	yes
MED20_LS001	chr6:41907287|41909269:-	MED20	mediator complex subunit 20	protein coding gene	no	ENST00000265350.8;ENST00000467535.5;ENST00000482361.1;ENST00000394251.2	18.209	10.955	6.238	0.961(9212)	0.979(687)	0.962(16719)	non tumor-specific	alt_5prime;exon_skip	yes
AL158850.1_LS001	chr6:139159253|139170400:-	AL158850.1	-	lncRNA gene	no	ENST00000585874.5	1.858	0.344	0.676	0.002(19)	0.004(3)	0.042(723)	non tumor-specific	nAS	yes
DOCK2_LS047	chr5:170019108|170027863:+	DOCK2	dedicator of cytokinesis 2	protein coding gene	no	ENST00000256935.12;ENST00000520908.6;ENST00000524185.5;ENST00000523351.6;ENST00000433448.2	11.873	5.004	4.308	0.751(7191)	0.812(570)	0.872(15158)	non tumor-specific	nAS	yes
CCL24_LS002	chr7:75813376|75823322:-	CCL24	C-C motif chemokine ligand 24	protein coding gene	no	.;.	6.280	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MMP14_LS0245	chr14:22847285|22847413:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	2.074	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
DUOX1_LS014	chr15:45136410|45136529:+	DUOX1	dual oxidase 1	protein coding gene	no	ENST00000321429.8;ENST00000389037.7;ENST00000561220.6	10.518	17.516	3.245	0.44(4220)	0.557(391)	0.608(10566)	non tumor-specific	nAS	yes
UN_PAX9_LS0009	chr14:36666360|36666462:+	PAX9	paired box 9	protein coding gene	no	.	0.694	0.086	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DDX23_LS002	chr12:48830692|48831142:-	DDX23	DEAD-box helicase 23	protein coding gene	no	ENST00000308025.7	149.151	67.728	91.129	0.97(9297)	0.964(677)	0.979(17021)	non tumor-specific	nAS	yes
PSMB7_LS020	chr9:124414935|124415364:-	PSMB7	proteasome 20S subunit beta 7	protein coding gene	no	ENST00000259457.7;ENST00000441097.1	327.620	158.395	158.816	0.942(9021)	0.944(663)	0.979(17021)	non tumor-specific	alt_5prime	yes
YPEL5_LS002	chr2:30147062|30155850:+	YPEL5	yippee like 5	protein coding gene	no	.;.	5.543	1.763	0.000	0.018(173)	0.024(17)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FMN1_LS0012	chr15:32810996|32817564:+	FMN1	formin 1	protein coding gene	no	.	2.249	0.105	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MPP6_LS0016	chr7:24650712|24661841:+	MPP6	membrane palmitoylated protein 6	protein coding gene	no	.	8.059	0.114	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SLC19A3_LS004	chr2:227688307|227695889:-	SLC19A3	solute carrier family 19 member 3	protein coding gene	no	ENST00000644224.1;ENST00000647113.1;ENST00000258403.8;ENST00000425817.6;ENST00000431622.6;ENST00000646591.1;ENST00000642268.1;ENST00000645700.1	4.063	8.068	2.634	0.4(3836)	0.685(481)	0.674(11710)	non tumor-specific	alt_3prime;exon_skip	yes
CLSTN3_LS009	chr12:7131838|7133024:+	CLSTN3	calsyntenin 3	protein coding gene	no	ENST00000539982.5	0.021	0.001	0.702	0.023(220)	0.013(9)	0.012(206)	non tumor-specific	alt_5prime;intron_retention	yes
KIAA1217_LS012	chr10:24438479|24473228:+	KIAA1217	KIAA1217	protein coding gene	no	ENST00000376462.5;ENST00000376456.8;ENST00000458595.5;ENST00000376452.7;ENST00000430453.6;ENST00000376454.7;ENST00000438429.5	9.217	10.211	6.976	0.782(7497)	0.902(633)	0.862(14985)	non tumor-specific	nAS	yes
UN_UBE3C_LS0043	chr7:157223351|157231080:+	UBE3C	ubiquitin protein ligase E3C	protein coding gene	yes	.	0.557	0.135	0.000	0.051(487)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
HEXA_LS024	chr15:72351234|72355559:-	HEXA	hexosaminidase subunit alpha	protein coding gene	no	ENST00000563762.5;ENST00000566672.5;ENST00000569509.5;ENST00000563762.5;ENST00000566672.5;ENST00000569509.5	1.551	1.043	4.233	0.925(8860)	0.937(658)	0.933(16214)	non tumor-specific	alt_5prime;exon_skip	yes
TMEM132B_LS011	chr12:125652632|125653565:+	TMEM132B	transmembrane protein 132B	protein coding gene	no	ENST00000299308.7;ENST00000613307.1;ENST00000535886.2	4.607	2.136	2.227	0.111(1059)	0.094(66)	0.603(10490)	non tumor-specific	nAS	yes
CPLANE1_LS041	chr5:37181005|37182760:-	CPLANE1	ciliogenesis and planar polarity effector 1	protein coding gene	no	ENST00000508244.5;ENST00000425232.6;ENST00000509849.5;ENST00000514429.5	2.695	1.617	3.988	0.595(5699)	0.692(486)	0.892(15502)	non tumor-specific	nAS	yes
AC018445.1_LS001	chr18:79470206|79470460:-	AC018445.1	-	lncRNA gene	no	ENST00000621571.1	0.252	0.005	0.801	0.012(119)	0.004(3)	0.026(446)	non tumor-specific	nAS	yes
ELMO2_LS038	chr20:46398771|46432894:-	ELMO2	engulfment and cell motility 2	protein coding gene	no	ENST00000487583.5	0.010	0.048	4.167	0.097(934)	0.088(62)	0.044(759)	non tumor-specific	nAS	yes
UN_IVD_LS0057	chr15:40419385|40419979:-	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	.	1.864	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_INTS6L_LS0012	chrX:135546469|135546773:+	INTS6L	integrator complex subunit 6 like	protein coding gene	no	.	1.896	0.183	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
MYO1F_LS024	chr19:8549600|8550166:-	MYO1F	myosin IF	protein coding gene	no	ENST00000613525.4	0.902	0.244	2.025	0.113(1080)	0.14(98)	0.736(12790)	non tumor-specific	nAS	yes
D2HGDH_LS023	chr2:241748942|241749701:+	D2HGDH	D-2-hydroxyglutarate dehydrogenase	protein coding gene	no	.;.;.	1.391	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
STOX1_LS006	chr10:68884459|68892589:+	STOX1	storkhead box 1	protein coding gene	no	ENST00000399165.8;ENST00000399165.8	1.607	0.928	2.223	0.422(4044)	0.583(409)	0.553(9615)	non tumor-specific	alt_5prime;exon_skip	yes
AC135048.1_LS003	chr16:30953460|30956200:+	AC135048.1	-	lncRNA gene	no	ENST00000562642.1	14.790	8.450	3.993	0.941(9012)	0.937(658)	0.925(16087)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MTO1_LS009	chr6:73471557|73473365:+	MTO1	mitochondrial tRNA translation optimization 1	protein coding gene	no	ENST00000521032.5	0.144	0.154	2.888	0.545(5225)	0.677(475)	0.911(15829)	non tumor-specific	exon_skip	yes
UN_RABL3_LS0011	chr3:120709909|120719664:-	RABL3	RAB, member of RAS oncogene family like 3	protein coding gene	no	.	1.951	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_KRT73-AS1_UP_LS0482	chr12:52491616|52518994:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	34.144	2.485	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LDLRAD3_LS0027	chr11:36098461|36223811:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	2.724	0.046	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ZNF687_LS019	chr1:151290007|151290122:+	ZNF687	zinc finger protein 687	protein coding gene	no	ENST00000336715.10;ENST00000449313.5;ENST00000324048.9;ENST00000426871.1	55.005	26.892	28.168	0.995(9532)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_CLHC1_LS0014	chr2:55204277|55205605:-	CLHC1	clathrin heavy chain linker domain containing 1	protein coding gene	no	.	0.945	0.158	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
USP6NL_LS009	chr10:11501208|11509595:-	USP6NL	USP6 N-terminal like	protein coding gene	no	ENST00000609104.5;ENST00000277575.5;ENST00000379237.6	13.169	8.353	5.759	0.892(8542)	0.969(680)	0.938(16296)	non tumor-specific	nAS	yes
UN_PEX26_UP_LS0006	chr22:18061258|18062156:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	2.994	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TEAD3_LS0096	chr6:35486711|35496848:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	0.475	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
SLMAP_LS046	chr3:57925934|57927296:+	SLMAP	sarcolemma associated protein	protein coding gene	no	ENST00000416658.5;ENST00000417128.5;ENST00000494088.5;ENST00000460223.1	17.537	24.214	23.292	0.957(9171)	0.98(688)	0.975(16946)	non tumor-specific	exon_skip;intron_retention	yes
UN_MFGE8_LS0011	chr15:88898868|88899050:+	MFGE8	milk fat globule EGF and factor V/VIII domain containing	protein coding gene	no	.	6.761	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC136475.10_UP_LS0008	chr11:272273|276942:-	AC136475.10	-	pseudogene	no	.	6.987	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ASMTL-AS1_LS0006	chrX:1402622|1402650:-	ASMTL-AS1	ASMTL antisense RNA 1	lncRNA gene	no	.	1.077	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL049634.3_UP_LS0002	chr20:1421921|1422007:+	AL049634.3	-	pseudogene	no	.	3.956	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
SMARCA1_LS019	chrX:129498071|129499732:-	SMARCA1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein coding gene	no	ENST00000617310.4;ENST00000371122.8;ENST00000371123.5;ENST00000371121.4	40.854	39.832	26.830	0.923(8840)	0.991(696)	0.937(16290)	non tumor-specific	alt_3prime	yes
UN_PPP1R12B_LS0063	chr1:202540241|202564443:+	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	0.801	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SORCS3_LS009	chr10:105147796|105157138:+	SORCS3	sortilin related VPS10 domain containing receptor 3	protein coding gene	no	ENST00000369701.7;ENST00000369699.8	5.423	3.133	1.697	0.107(1028)	0.041(29)	0.249(4326)	non tumor-specific	alt_3prime	yes
UN_SHROOM3_LS0039	chr4:76637658|76639574:+	SHROOM3	shroom family member 3	protein coding gene	no	.	1.761	0.403	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PHF8_LS005	chrX:53944243|53962844:-	PHF8	PHD finger protein 8	protein coding gene	no	ENST00000338154.10;ENST00000357988.9;ENST00000338946.10;ENST00000396282.6;ENST00000443302.5;ENST00000322659.12	27.968	14.872	21.081	0.983(9417)	0.993(697)	0.978(17004)	non tumor-specific	nAS	yes
UN_PDE8A_UP_LS0024	chr15:84949275|84951080:+	PDE8A	phosphodiesterase 8A	protein coding gene	no	.	3.328	2.005	0.000	0.021(200)	0.023(16)	0(0)	non tumor-specific	exon_skip;intron_retention	no
DYNLL1_LS004	chr12:120470104|120496416:+	DYNLL1	dynein light chain LC8-type 1	protein coding gene	no	ENST00000392509.6;ENST00000392509.6	0.666	0.733	3.047	0.266(2549)	0.228(160)	0.851(14785)	non tumor-specific	alt_3prime;exon_skip	yes
SHMT2_LS022	chr12:57232292|57232425:+	SHMT2	serine hydroxymethyltransferase 2	protein coding gene	no	ENST00000554600.5;ENST00000557269.5;ENST00000555563.5;ENST00000554656.5;ENST00000555774.5;ENST00000555116.5;ENST00000553837.5;ENST00000554604.5;ENST00000555213.1	1.527	0.738	3.755	0.924(8852)	0.868(609)	0.907(15765)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_MIIP_LS0002	chr1:12019653|12021645:+	MIIP	migration and invasion inhibitory protein	protein coding gene	no	.	1.729	0.078	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_SRRM2_LS0419	chr16:2767623|2767666:-	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.	7.909	1.427	0.000	0.012(112)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC079447.1_LS0106	chr2:99279893|99280276:-	AC079447.1	-	protein coding gene	no	.	2.099	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RBM38_LS0064	chr20:57408144|57409032:-	RBM38	RNA binding motif protein 38	protein coding gene	yes	.	1.909	1.014	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC006145.1_LS005	chr7:82023897|82027655:+	AC006145.1	-	lncRNA gene	no	ENST00000439234.5;ENST00000454066.1	4.740	0.000	0.594	0.004(40)	0(0)	0.018(307)	non tumor-specific	nAS	yes
ABLIM3_LS026	chr5:149240774|149244881:+	ABLIM3	actin binding LIM protein family member 3	protein coding gene	no	.;.	1.267	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CFTR_LS003	chr7:117479345|117479462:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000446805.1	0.486	0.232	0.976	0.066(636)	0.078(55)	0.075(1306)	non tumor-specific	exon_skip;intron_retention	yes
SDR42E2_LS005	chr16:22170951|22172256:+	SDR42E2	short chain dehydrogenase/reductase family 42E, member 2	protein coding gene	no	ENST00000602312.2	3.645	0.000	1.338	0.004(42)	0(0)	0.154(2674)	non tumor-specific	exon_skip	yes
UN_AC103563.3_LS0001	chr2:94953462|94953548:-	AC103563.3	-	pseudogene	no	.	5.458	2.017	0.000	0.006(61)	0.011(8)	0(0)	non tumor-specific	nAS	no
NME2_LS002	chr17:51165904|51166827:+	NME2	NME/NM23 nucleoside diphosphate kinase 2	protein coding gene	no	ENST00000513177.5	0.163	0.254	2.059	0.944(9047)	0.959(673)	0.716(12438)	non tumor-specific	nAS	yes
TXNDC17_LS009	chr17:6641932|6642249:+	TXNDC17	thioredoxin domain containing 17	protein coding gene	no	ENST00000574734.5	1.829	2.389	0.733	0.472(4525)	0.376(264)	0.245(4265)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ENPP7P8_LS0046	chr11:71744499|71745388:+	ENPP7P8	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8	pseudogene	no	.	4.379	0.209	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC092378.1_LS006	chr16:58756178|59064182:+	AC092378.1	-	lncRNA gene	no	ENST00000500117.1	0.495	0.000	0.812	0(2)	0(0)	0.008(134)	non tumor-specific	nAS	yes
UN_PHF20L1_LS0010	chr8:132794817|132795966:+	PHF20L1	PHD finger protein 20 like 1	protein coding gene	no	.	4.408	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
NR5A1_LS009	chr9:124503410|124507249:-	NR5A1	nuclear receptor subfamily 5 group A member 1	protein coding gene	no	ENST00000620110.4;ENST00000373588.8	22.062	38.409	2.166	0.052(501)	0.01(7)	0.082(1421)	non tumor-specific	exon_skip	yes
UN_FRG1HP_LS0011	chr9:40994699|41056955:+	FRG1HP	FSHD region gene 1 family member H, pseudogene	pseudogene	no	.	5.371	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LRRK1_LS037	chr15:101061288|101062574:+	LRRK1	leucine rich repeat kinase 1	protein coding gene	no	ENST00000388948.7;ENST00000531270.5;ENST00000526457.3;ENST00000525395.2	12.442	7.189	8.161	0.756(7246)	0.802(563)	0.939(16325)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF74_LS0012	chr22:20400758|20401206:+	ZNF74	zinc finger protein 74	protein coding gene	no	.	3.890	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_BARD1_LS0023	chr2:214793225|214797061:-	BARD1	BRCA1 associated RING domain 1	protein coding gene	yes	.	1.494	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	exon_skip	no
LINC02532_LS013	chr6:106747288|106749634:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	ENST00000433965.5;ENST00000427903.5	9.749	10.538	1.941	0.182(1740)	0.292(205)	0.102(1780)	non tumor-specific	nAS	yes
HMBS_LS001	chr11:119085066|119085811:+	HMBS	hydroxymethylbilane synthase	protein coding gene	no	ENST00000536813.6	0.135	0.000	0.612	0.004(39)	0.006(4)	0.019(333)	non tumor-specific	exon_skip	yes
BRSK2_LS029	chr11:1456687|1456955:+	BRSK2	BR serine/threonine kinase 2	protein coding gene	no	ENST00000529433.5;ENST00000531197.5;ENST00000526678.5;ENST00000528710.5;ENST00000529951.5;ENST00000544817.5;ENST00000526768.5	3.620	3.164	2.674	0.344(3298)	0.094(66)	0.511(8881)	non tumor-specific	exon_skip	yes
ZSWIM5_LS004	chr1:45034469|45035688:-	ZSWIM5	zinc finger SWIM-type containing 5	protein coding gene	no	ENST00000359600.5	6.652	5.229	3.298	0.624(5980)	0.819(575)	0.856(14887)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EEF1A1P5_LS0122	chr9:133019858|133020306:-	EEF1A1P5	eukaryotic translation elongation factor 1 alpha 1 pseudogene 5	pseudogene	no	.	13.438	0.285	0.000	0.004(38)	0.004(3)	0(0)	non tumor-specific	nAS	no
DUS3L_LS003	chr19:5785791|5786467:-	DUS3L	dihydrouridine synthase 3 like	protein coding gene	no	ENST00000320699.12;ENST00000589085.5;ENST00000309061.11;ENST00000592468.5;ENST00000591560.5;ENST00000592673.1	28.586	11.321	36.942	0.993(9511)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;intron_retention	yes
ENO2_LS013	chr12:6917714|6917940:+	ENO2	enolase 2	protein coding gene	no	ENST00000541477.5;ENST00000229277.5;ENST00000538763.5;ENST00000535366.5;ENST00000441285.2	62.098	64.549	69.402	0.976(9353)	0.972(682)	0.978(17008)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC069503.2_LS0014	chr12:121903107|121914992:+	AC069503.2	-	protein coding gene	no	.	2.386	0.214	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_FLVCR1_LS0012	chr1:212891181|212894986:+	FLVCR1	FLVCR heme transporter 1	protein coding gene	no	.	2.207	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
PAQR8_LS002	chr6:52362249|52403162:+	PAQR8	progestin and adipoQ receptor family member 8	protein coding gene	no	ENST00000442253.2	1.701	2.117	2.843	0.657(6297)	0.719(505)	0.799(13891)	non tumor-specific	exon_skip	yes
CWC27_LS008	chr5:64789020|64800248:+	CWC27	CWC27 spliceosome associated cyclophilin	protein coding gene	no	ENST00000381070.7;ENST00000508024.1	56.363	32.693	34.834	0.992(9505)	0.997(700)	0.979(17016)	non tumor-specific	alt_5prime	yes
RBM42_LS016	chr19:35634019|35634256:+	RBM42	RNA binding motif protein 42	protein coding gene	no	ENST00000588161.5;ENST00000262633.8;ENST00000592202.5;ENST00000589559.5;ENST00000589871.1	218.164	100.220	149.841	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_RBM15B_LS0052	chr3:51392671|51392806:-	RBM15B	RNA binding motif protein 15B	protein coding gene	no	.	1.812	0.542	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC113155.1_UP_LS0003	chr4:152935450|152935690:-	AC113155.1	-	pseudogene	no	.	0.742	0.079	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRIG2_LS012	chr1:113100488|113107594:+	LRIG2	leucine rich repeats and immunoglobulin like domains 2	protein coding gene	no	ENST00000361127.5;ENST00000492207.5	3.350	2.361	2.356	0.816(7820)	0.866(608)	0.842(14637)	non tumor-specific	exon_skip	yes
UN_B4GALNT4_LS0029	chr11:381158|381669:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	.	6.467	0.110	0.000	0.032(309)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PEX19_LS012	chr1:160283109|160283530:-	PEX19	peroxisomal biogenesis factor 19	protein coding gene	no	ENST00000368072.9;ENST00000532508.5;ENST00000462644.5;ENST00000532643.5;ENST00000392220.2;ENST00000533699.5;ENST00000524939.1	54.971	40.506	38.129	0.991(9497)	0.997(700)	0.979(17015)	non tumor-specific	nAS	yes
EXOC3_LS011	chr5:454051|461960:+	EXOC3	exocyst complex component 3	protein coding gene	no	ENST00000515601.6	2.227	0.931	3.699	0.224(2144)	0.195(137)	0.933(16220)	non tumor-specific	exon_skip	yes
JMJD1C_LS015	chr10:63193151|63193345:-	JMJD1C	jumonji domain containing 1C	protein coding gene	no	ENST00000639129.1;ENST00000399262.6;ENST00000542921.5;ENST00000327520.7;ENST00000490669.1	23.420	20.392	25.839	0.969(9288)	0.99(695)	0.979(17015)	non tumor-specific	alt_3prime;intron_retention	yes
ADAMTS14_LS003	chr10:70702468|70708588:+	ADAMTS14	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein coding gene	no	ENST00000373208.5;ENST00000373207.1	3.522	0.661	1.219	0.278(2661)	0.037(26)	0.403(6997)	non tumor-specific	exon_skip	yes
PPID_LS009	chr4:158719286|158721343:-	PPID	peptidylprolyl isomerase D	protein coding gene	no	ENST00000307720.3	67.541	38.251	28.087	0.99(9483)	0.997(700)	0.979(17009)	non tumor-specific	nAS	yes
COL6A3_LS005	chr2:237333548|237334626:-	COL6A3	collagen type VI alpha 3 chain	protein coding gene	no	ENST00000353578.8;ENST00000295550.8;ENST00000491769.1;ENST00000472056.5;ENST00000347401.7;ENST00000409809.5;ENST00000493608.1	245.946	173.929	178.803	0.981(9400)	0.994(698)	0.94(16338)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CDC26_LS0005	chr9:113267439|113270807:-	CDC26	cell division cycle 26	protein coding gene	no	.	2.752	0.145	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KCNMB2-AS1_LS001	chr3:178526625|178535714:-	KCNMB2-AS1	KCNMB2 antisense RNA 1	lncRNA gene	no	ENST00000437488.5	1.556	0.000	0.705	0.013(127)	0(0)	0.007(113)	non tumor-specific	nAS	yes
CTDSP1_LS020	chr2:218401712|218402114:+	CTDSP1	CTD small phosphatase 1	protein coding gene	no	ENST00000491064.5;ENST00000443891.5;ENST00000473420.5;ENST00000497677.5;ENST00000452977.5;ENST00000428361.5;ENST00000431127.1;ENST00000488627.5;ENST00000482272.5;ENST00000464255.1;ENST00000491064.5;ENST00000443891.5;ENST00000473420.5;ENST00000497677.5;ENST00000452977.5;ENST00000428361.5;ENST00000431127.1;ENST00000488627.5;ENST00000482272.5;ENST00000464255.1	63.426	51.928	84.484	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CDK18_LS019	chr1:205525195|205526065:+	CDK18	cyclin dependent kinase 18	protein coding gene	no	ENST00000429964.6;ENST00000512922.5;ENST00000504648.5;ENST00000506784.5;ENST00000360066.6;ENST00000478560.5;ENST00000419301.1;ENST00000515494.5;ENST00000476153.6;ENST00000505932.5	12.972	8.188	24.261	0.958(9175)	0.984(691)	0.952(16544)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FDX1_LS0015	chr11:110459219|110462354:+	FDX1	ferredoxin 1	protein coding gene	no	.	1.651	1.110	0.000	0.007(65)	0.019(13)	0(0)	non tumor-specific	exon_skip	no
UN_CLMAT3_UP_LS0007	chr5:151638076|151654039:+	CLMAT3	colorectal liver metastasis associated transcript 3	lncRNA gene	no	.	1.343	0.499	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM84A_LS0039	chr2:14635644|14649454:+	FAM84A	LRAT domain containing 1	protein coding gene	no	.	2.581	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NFASC_LS041	chr1:204988806|204991292:+	NFASC	neurofascin	protein coding gene	no	ENST00000339876.10;ENST00000539706.5;ENST00000404076.5;ENST00000401399.5;ENST00000404907.5;ENST00000430393.5;ENST00000367173.7;ENST00000492085.1;ENST00000413225.5	1.066	1.940	4.068	0.374(3588)	0.751(527)	0.81(14088)	non tumor-specific	exon_skip;mutex_exons	yes
CDV3_LS011	chr3:133584150|133586569:+	CDV3	CDV3 homolog	protein coding gene	no	ENST00000511392.5	0.587	0.722	1.366	0.262(2515)	0.379(266)	0.702(12202)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_JAG2_LS0001	chr14:105140987|105141092:+	JAG2	jagged canonical Notch ligand 2	protein coding gene	no	.	6.317	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNST_LS0049	chr1:246648037|246655326:+	CNST	consortin, connexin sorting protein	protein coding gene	no	.	2.120	0.279	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
KIAA0825_LS013	chr5:94470111|94471466:-	KIAA0825	KIAA0825	protein coding gene	no	ENST00000513200.7;ENST00000504117.1	1.021	0.298	0.976	0.137(1308)	0.329(231)	0.505(8778)	non tumor-specific	nAS	yes
UN_ZNF736P9Y_UP_LS0020	chrY:8111964|8126058:-	ZNF736P9Y	zinc finger protein 736 pseudogene 9, Y-linked	pseudogene	no	.	4.315	1.209	0.000	0.073(702)	0.027(19)	0(0)	non tumor-specific	nAS	no
CROCC_LS051	chr1:16968418|16970253:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	ENST00000465021.5	2.553	1.180	2.438	0.836(8012)	0.724(508)	0.868(15090)	non tumor-specific	exon_skip	yes
LTA4H_LS008	chr12:96009148|96011753:-	LTA4H	leukotriene A4 hydrolase	protein coding gene	no	ENST00000548375.5	0.580	0.001	0.792	0.014(137)	0.023(16)	0.254(4414)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_KDM5C_LS0010	chrX:53192648|53192720:+	KDM5C	lysine demethylase 5C	protein coding gene	no	.	2.637	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PCGEM1_LS003	chr2:192750872|192775578:+	PCGEM1	PCGEM1 prostate-specific transcript	lncRNA gene	no	ENST00000454040.5	0.368	0.098	1.202	0.045(434)	0.051(36)	0.004(67)	non tumor-specific	nAS	yes
KAT2B_LS015	chr3:20140364|20146316:+	KAT2B	lysine acetyltransferase 2B	protein coding gene	no	ENST00000263754.4;ENST00000468111.1	23.471	25.864	23.947	0.944(9042)	0.991(696)	0.979(17013)	non tumor-specific	nAS	yes
TCERG1_LS002	chr5:146455281|146457183:+	TCERG1	transcription elongation regulator 1	protein coding gene	no	ENST00000507175.5;ENST00000296702.9;ENST00000394421.6;ENST00000549332.1	18.810	8.635	21.210	0.939(8997)	0.973(683)	0.971(16886)	non tumor-specific	exon_skip	yes
UN_AK9_LS0026	chr6:109656884|109659213:-	AK9	adenylate kinase 9	protein coding gene	no	.	2.300	0.110	0.000	0.004(43)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_GPT_LS0014	chr8:144505489|144505995:+	GPT	glutamic--pyruvic transaminase	protein coding gene	no	.	4.939	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_PNMA8A_LS0011	chr19:46468577|46469662:-	PNMA8A	PNMA family member 8A	protein coding gene	no	.	8.803	0.335	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CC2D1B_LS013	chr1:52354939|52355398:-	CC2D1B	coiled-coil and C2 domain containing 1B	protein coding gene	no	ENST00000371586.6;ENST00000491136.6;ENST00000284376.7;ENST00000438021.5;ENST00000460261.5;ENST00000450942.2;ENST00000460370.1;ENST00000485966.1	34.731	20.067	57.733	0.997(9552)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
AL445253.1_LS002	chr1:22155024|22155797:+	AL445253.1	-	no	no	ENST00000648968.1	2.669	1.034	0.000	0.073(703)	0.161(113)	0(0)	non tumor-specific	nAS	yes
EIF2AK4_LS038	chr15:40029464|40030359:+	EIF2AK4	eukaryotic translation initiation factor 2 alpha kinase 4	protein coding gene	no	ENST00000263791.9;ENST00000560855.5;ENST00000558629.5;ENST00000558557.1	73.519	36.736	31.753	0.987(9455)	0.993(697)	0.979(17012)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF232_LS0032	chr17:5121489|5121599:+	ZNF232	zinc finger protein 232	protein coding gene	no	.	3.509	0.369	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PARGP1_LS008	chr10:45910706|45916079:-	PARGP1	poly(ADP-ribose) glycohydrolase pseudogene 1	pseudogene	no	ENST00000417555.2	4.906	2.773	3.325	0.572(5481)	0.644(452)	0.91(15824)	non tumor-specific	nAS	yes
F13A1_LS012	chr6:6250929|6266558:-	F13A1	coagulation factor XIII A chain	protein coding gene	no	ENST00000264870.7;ENST00000479211.1	10.334	13.757	17.320	0.801(7671)	0.905(635)	0.902(15671)	non tumor-specific	exon_skip	yes
CIDEA_LS007	chr18:12263866|12264307:+	CIDEA	cell death inducing DFFA like effector a	protein coding gene	no	ENST00000522713.5	0.281	0.052	1.478	0.007(69)	0.105(74)	0.216(3763)	non tumor-specific	exon_skip	yes
SPEG_LS018	chr2:219444742|219444825:+	SPEG	striated muscle enriched protein kinase	protein coding gene	no	ENST00000312358.11;ENST00000498378.5;ENST00000435853.5;ENST00000403148.6;ENST00000431523.5;ENST00000396698.5;ENST00000452101.1;ENST00000420132.5;ENST00000464989.5	8.483	3.864	20.795	0.601(5754)	0.689(484)	0.939(16314)	non tumor-specific	alt_3prime;exon_skip	yes
SYNE1_LS153	chr6:152455634|152455886:-	SYNE1	spectrin repeat containing nuclear envelope protein 1	protein coding gene	no	ENST00000341594.9	1.026	0.449	0.824	0.001(6)	0.003(2)	0.193(3359)	non tumor-specific	alt_3prime	yes
RNF216_LS012	chr7:5725438|5729432:-	RNF216	ring finger protein 216	protein coding gene	no	ENST00000425013.6;ENST00000389902.7;ENST00000389900.8	36.774	18.956	24.145	0.979(9382)	0.991(696)	0.979(17014)	non tumor-specific	exon_skip	yes
FRY_LS053	chr13:32236172|32237379:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	8.446	9.045	10.693	0.646(6189)	0.865(607)	0.965(16767)	non tumor-specific	nAS	yes
UN_PSD_LS0039	chr10:102418032|102418525:+	PSD	pleckstrin and Sec7 domain containing	protein coding gene	no	.	0.713	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC068831.7_LS0029	chr15:90981696|90981748:-	AC068831.7	-	protein coding gene	no	.	27.052	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_LIPJ_UP_LS0030	chr10:88132553|88365733:+	LIPJ	lipase family member J	protein coding gene	no	.	1.936	0.160	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TPM4_LS0046	chr19:16093753|16101266:+	TPM4	tropomyosin 4	protein coding gene	no	.	158.603	118.648	0.000	0.034(323)	0.057(40)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CNOT7_LS014	chr8:17245247|17246173:-	CNOT7	CCR4-NOT transcription complex subunit 7	protein coding gene	no	.;.	1.275	0.000	0.000	0.006(54)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
IGF2R_LS043	chr6:160089253|160089916:+	IGF2R	insulin like growth factor 2 receptor	protein coding gene	yes	ENST00000356956.5;ENST00000647592.1;ENST00000650503.1;ENST00000475834.2	112.857	79.288	56.393	0.995(9537)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SGPL1_LS025	chr10:70876661|70877195:+	SGPL1	sphingosine-1-phosphate lyase 1	protein coding gene	no	ENST00000373202.7	54.460	31.080	16.721	0.978(9369)	0.979(687)	0.978(16997)	non tumor-specific	nAS	yes
GNPNAT1_LS009	chr14:52783485|52791428:-	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	ENST00000554230.5	0.347	0.175	0.590	0.268(2568)	0.245(172)	0.006(97)	non tumor-specific	exon_skip	yes
UN_SPACA3_UP_LS0004	chr17:32945005|32947841:+	SPACA3	sperm acrosome associated 3	protein coding gene	no	.	1.160	0.845	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
TAOK3_LS008	chr12:118181607|118189807:-	TAOK3	TAO kinase 3	protein coding gene	no	ENST00000419821.6;ENST00000392533.7;ENST00000537305.5;ENST00000537952.1;ENST00000540561.5;ENST00000537822.1	43.379	28.240	26.523	0.975(9344)	0.986(692)	0.979(17016)	non tumor-specific	exon_skip	yes
EIF2B4_LS004	chr2:27366936|27367170:-	EIF2B4	eukaryotic translation initiation factor 2B subunit delta	protein coding gene	no	ENST00000417567.1	1.130	0.617	1.198	0.746(7143)	0.726(510)	0.594(10324)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_TTC22_LS0013	chr1:54780670|54780759:+	TTC22	tetratricopeptide repeat domain 22	protein coding gene	no	.	1.956	0.884	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CBR4_LS0018	chr4:168998285|169002071:-	CBR4	carbonyl reductase 4	protein coding gene	no	.	12.917	10.318	0.000	0.833(7982)	0.917(644)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
CCDC91_LS044	chr12:28305806|28306742:+	CCDC91	coiled-coil domain containing 91	protein coding gene	no	ENST00000535520.5;ENST00000539107.5;ENST00000536442.5;ENST00000544649.5;ENST00000545336.5;ENST00000543534.5;ENST00000543809.5;ENST00000545737.5;ENST00000381259.5;ENST00000540401.5	27.260	20.260	21.294	0.975(9346)	0.99(695)	0.977(16990)	non tumor-specific	alt_3prime;alt_5prime	yes
SLC2A2_LS002	chr3:170998103|170999065:-	SLC2A2	solute carrier family 2 member 2	protein coding gene	no	.;.	0.038	0.318	0.000	0(2)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UGDH-AS1_LS003	chr4:39588059|39589587:+	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	ENST00000504032.1	1.629	0.731	0.992	0.055(523)	0.085(60)	0.49(8518)	non tumor-specific	nAS	yes
UN_FIZ1_LS0025	chr19:55597901|55600587:-	FIZ1	FLT3 interacting zinc finger 1	protein coding gene	no	.	0.796	0.183	0.000	0.011(104)	0.011(8)	0(0)	non tumor-specific	intron_retention	no
UN_ELF2_LS0056	chr4:139116807|139125164:-	ELF2	E74 like ETS transcription factor 2	protein coding gene	no	.	4.000	0.839	0.000	0.025(244)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_C17orf112_UP_LS0003	chr17:52925183|52926805:+	C17orf112	long intergenic non-protein coding RNA 2876	lncRNA gene	no	.	4.909	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRMT7_LS012	chr16:68311246|68315897:+	PRMT7	protein arginine methyltransferase 7	protein coding gene	no	ENST00000569571.5	0.020	0.023	0.616	0.702(6729)	0.714(501)	0.007(129)	non tumor-specific	nAS	yes
UN_GPANK1_LS0015	chr6:31664906|31664986:-	GPANK1	G-patch domain and ankyrin repeats 1	protein coding gene	no	.	2.483	0.586	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_LINC00534_LS0007	chr8:90306488|90321191:-	LINC00534	long intergenic non-protein coding RNA 534	lncRNA gene	no	.	5.311	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
ELL_LS012	chr19:18471035|18472835:-	ELL	elongation factor for RNA polymerase II	protein coding gene	yes	ENST00000594635.6	0.034	0.113	0.659	0.148(1418)	0.171(120)	0.049(853)	non tumor-specific	exon_skip	yes
RASSF3_LS007	chr12:64684894|64688216:+	RASSF3	Ras association domain family member 3	protein coding gene	yes	ENST00000637125.1;ENST00000336061.2;ENST00000542104.5	32.672	29.599	19.493	0.952(9122)	0.984(691)	0.972(16903)	non tumor-specific	exon_skip	yes
BROX_LS001	chr1:222712942|222713588:+	BROX	BRO1 domain and CAAX motif containing	protein coding gene	no	ENST00000496267.1	3.435	1.476	2.871	0.867(8308)	0.852(598)	0.92(15994)	non tumor-specific	alt_5prime;exon_skip	yes
ANO2_LS033	chr12:5832603|5854043:-	ANO2	anoctamin 2	protein coding gene	no	ENST00000544988.1	2.464	0.949	1.958	0.077(741)	0.134(94)	0.68(11812)	non tumor-specific	exon_skip	yes
CBFA2T2_LS003	chr20:33562674|33573974:+	CBFA2T2	CBFA2/RUNX1 partner transcriptional co-repressor 2	protein coding gene	no	ENST00000346541.7;ENST00000492345.5	0.680	0.136	0.666	0.05(479)	0.041(29)	0.043(745)	non tumor-specific	exon_skip;mutex_exons	yes
GRAMD2A_LS004	chr15:72162876|72163266:-	GRAMD2A	GRAM domain containing 2A	protein coding gene	no	ENST00000564184.1	0.187	0.053	0.724	0.088(843)	0.238(167)	0.043(744)	non tumor-specific	alt_3prime;intron_retention	yes
ALB_LS018	chr4:73408805|73409355:+	ALB	Fas binding factor 1	protein coding gene	no	ENST00000441319.5;ENST00000295897.8;ENST00000621085.4;ENST00000514786.1;ENST00000509063.5;ENST00000505649.5	1053.392	5804.534	2.263	0.2(1914)	0.4(281)	0.699(12149)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
RXRG_LS012	chr1:165437201|165444845:-	RXRG	retinoid X receptor gamma	protein coding gene	no	ENST00000465764.1	0.792	0.175	1.327	0.178(1710)	0.204(143)	0.289(5032)	non tumor-specific	nAS	yes
UN_BX571818.1_LS0010	chr1:206041678|206051742:+	BX571818.1	-	pseudogene	no	.	3.453	1.288	0.000	0.026(246)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_SLC29A4_LS0022	chr7:5294934|5296334:+	SLC29A4	solute carrier family 29 member 4	protein coding gene	no	.	3.134	0.463	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_AL354854.1_UP_LS0003	chr9:31233840|31234445:-	AL354854.1	-	pseudogene	no	.	1.936	0.267	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CYP21A2_UP_LS0100	chr6:31996965|32029626:+	CYP21A2	cytochrome P450 family 21 subfamily A member 2	protein coding gene	no	.	41.011	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MUL1_LS0029	chr1:20502186|20503222:-	MUL1	mitochondrial E3 ubiquitin protein ligase 1	protein coding gene	no	.	4.332	0.389	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SPTBN5_LS0036	chr15:41882145|41882435:-	SPTBN5	spectrin beta, non-erythrocytic 5	protein coding gene	no	.	0.534	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF187_LS0044	chr1:228493250|228493988:-	RNF187	ring finger protein 187	protein coding gene	no	.	3.000	1.018	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P1_UP_LS0007	chr4:79865671|80004023:+	KPNA2P1	karyopherin subunit alpha 2 pseudogene 1	pseudogene	no	.	4.262	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTX2_LS004	chr2:176270419|176296860:+	MTX2	metaxin 2	protein coding gene	no	ENST00000420864.5	2.948	1.882	5.600	0.946(9067)	0.966(678)	0.952(16553)	non tumor-specific	exon_skip	yes
METTL23_LS013	chr17:76727213|76729690:+	METTL23	methyltransferase like 23	protein coding gene	no	ENST00000615984.4;ENST00000592849.5;ENST00000586738.5	2.838	2.291	4.302	0.969(9282)	0.984(691)	0.942(16377)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC090403.1_UP_LS0007	chr18:27933124|27935230:-	AC090403.1	-	lncRNA gene	no	.	2.605	0.103	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NCLN_LS0029	chr19:3207251|3207371:+	NCLN	nicalin	protein coding gene	no	.	22.637	2.838	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
TBCD_LS046	chr17:82923733|82924939:+	TBCD	tubulin folding cofactor D	protein coding gene	no	ENST00000355528.8;ENST00000539345.6;ENST00000576760.5;ENST00000574975.5;ENST00000571796.5;ENST00000574422.1;ENST00000571618.5;ENST00000574818.5;ENST00000574886.1	64.879	33.167	55.584	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CLASRP_LS0007	chr19:45052994|45053098:+	CLASRP	CLK4 associating serine/arginine rich protein	protein coding gene	no	.	17.781	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF605_LS006	chr12:132945797|132956243:-	ZNF605	zinc finger protein 605	protein coding gene	no	ENST00000392321.3;ENST00000331711.11;ENST00000412621.6	1.871	1.369	2.802	0.876(8396)	0.934(656)	0.895(15565)	non tumor-specific	exon_skip	yes
AC187653.1_LS001	chr7:290276|290653:+	AC187653.1	-	protein coding gene	no	ENST00000506382.2	47.624	0.000	0.705	0.002(18)	0(0)	0.023(403)	non tumor-specific	nAS	yes
COL27A1_LS039	chr9:114252932|114258541:+	COL27A1	collagen type XXVII alpha 1 chain	protein coding gene	no	ENST00000356083.7;ENST00000494090.6	10.229	4.593	14.520	0.713(6833)	0.776(545)	0.931(16184)	non tumor-specific	nAS	yes
UN_AL023581.2_LS0003	chr6:143039828|143042303:-	AL023581.2	-	lncRNA gene	no	.	2.520	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRPC4AP_LS0077	chr20:35035308|35049866:-	TRPC4AP	transient receptor potential cation channel subfamily C member 4 associated protein	protein coding gene	no	.	5.878	0.000	0.000	0.005(50)	0(0)	0(0)	non tumor-specific	exon_skip	no
GCGR_LS010	chr17:81811560|81811651:+	GCGR	glucagon receptor	protein coding gene	no	ENST00000400723.7	15.729	9.490	1.365	0.092(885)	0.268(188)	0.313(5442)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SPNS1_LS005	chr16:28975100|28975188:+	SPNS1	sphingolipid transporter 1 (putative)	protein coding gene	no	ENST00000323081.12	0.690	1.224	5.847	0.935(8956)	0.93(653)	0.959(16663)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
COL4A3_LS048	chr2:227304144|227304985:+	COL4A3	collagen type IV alpha 3 chain	protein coding gene	no	ENST00000396578.7;ENST00000469504.2	2.043	7.588	3.156	0.191(1834)	0.467(328)	0.727(12630)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SPIRE1_LS004	chr18:12452512|12453068:-	SPIRE1	spire type actin nucleation factor 1	protein coding gene	no	ENST00000409402.8;ENST00000410092.7;ENST00000309836.9;ENST00000453447.6;ENST00000464481.5;ENST00000592156.5;ENST00000588236.1	17.071	10.706	13.439	0.897(8592)	0.94(660)	0.947(16466)	non tumor-specific	intron_retention;mutex_exons	yes
OPA1_LS036	chr3:193645625|193645728:+	OPA1	OPA1 mitochondrial dynamin like GTPase	protein coding gene	no	ENST00000361715.6;ENST00000361150.6;ENST00000361510.7;ENST00000361828.7;ENST00000392438.7;ENST00000361908.8;ENST00000644595.1;ENST00000646277.1;ENST00000642445.1;ENST00000643737.1;ENST00000644841.1;ENST00000392436.7;ENST00000646085.1;ENST00000643329.1;ENST00000646793.1;ENST00000392437.6;ENST00000645553.1;ENST00000642593.1;ENST00000644959.1;ENST00000642289.1;ENST00000646699.1;ENST00000646544.1;ENST00000483516.1	47.488	32.761	20.476	0.979(9384)	0.994(698)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_PRKCA_LS0068	chr17:66808487|66808522:-	PRKCA	protein kinase C alpha	protein coding gene	yes	.	3.503	0.523	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MRPL48_LS0011	chr11:73808350|73817825:+	MRPL48	mitochondrial ribosomal protein L48	protein coding gene	no	.	1.842	0.211	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
TTC7A_LS016	chr2:46993528|46994357:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	ENST00000409245.5;ENST00000319190.9;ENST00000461601.5;ENST00000394850.6;ENST00000409825.5;ENST00000474321.6;ENST00000491786.5	32.246	22.370	21.040	0.978(9367)	0.994(698)	0.978(17000)	non tumor-specific	exon_skip	yes
UN_AC003087.1_UP_LS0033	chr7:24197029|24341733:-	AC003087.1	-	lncRNA gene	no	.	2.480	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
SRGAP3_LS022	chr3:9038090|9047391:-	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	ENST00000383836.7;ENST00000360413.7;ENST00000618999.4;ENST00000475560.5;ENST00000433332.7;ENST00000485983.6	5.392	4.515	2.724	0.496(4749)	0.587(412)	0.772(13427)	non tumor-specific	nAS	yes
ADAM11_LS029	chr17:44779239|44779739:+	ADAM11	ADAM metallopeptidase domain 11	protein coding gene	no	ENST00000200557.10;ENST00000355638.8;ENST00000535346.5;ENST00000587773.1	1.970	4.469	2.257	0.063(604)	0.007(5)	0.278(4838)	non tumor-specific	exon_skip;intron_retention	yes
NRAP_LS035	chr10:113643038|113645825:-	NRAP	nebulin related anchoring protein	protein coding gene	no	ENST00000369358.8;ENST00000359988.3	11.393	253.737	1.125	0.02(191)	0.056(39)	0.328(5699)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0332	chr6:31817361|31829432:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	108.443	31.857	0.000	0.003(29)	0.007(5)	0(0)	non tumor-specific	nAS	no
CYLD_LS021	chr16:50782466|50784329:+	CYLD	CYLD lysine 63 deubiquitinase	protein coding gene	yes	ENST00000569418.5;ENST00000569891.5;ENST00000311559.13;ENST00000564326.5;ENST00000566206.5;ENST00000398568.6;ENST00000427738.7;ENST00000568704.2;ENST00000563629.1	32.390	23.347	24.281	0.962(9213)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime	yes
ARHGDIA_LS015	chr17:81869406|81869741:-	ARHGDIA	Rho GDP dissociation inhibitor alpha	protein coding gene	no	.;.	443.601	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM175_LS0026	chr4:958271|958296:-	TMEM175	transmembrane protein 175	protein coding gene	no	.	4.158	0.224	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF25_LS003	chr2:218665247|218665916:-	RNF25	ring finger protein 25	protein coding gene	no	ENST00000295704.6;ENST00000473034.5;ENST00000463188.5;ENST00000423170.1	63.994	35.954	41.944	0.997(9551)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
KLHL11_LS001	chr17:41855321|41864826:-	KLHL11	kelch like family member 11	protein coding gene	no	ENST00000319121.3	2.452	1.777	1.996	0.696(6671)	0.796(559)	0.783(13612)	non tumor-specific	nAS	yes
FAM71D_LS018	chr14:67221807|67224641:+	FAM71D	family with sequence similarity 71 member D	protein coding gene	no	ENST00000557671.2	0.161	0.000	0.716	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_SMPD1_LS0010	chr11:6393693|6393882:+	SMPD1	sphingomyelin phosphodiesterase 1	protein coding gene	no	.	2.908	1.540	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PTGER4_LS003	chr5:40681860|40685392:+	PTGER4	prostaglandin E receptor 4	protein coding gene	no	ENST00000509543.1	0.451	0.381	0.827	0.276(2648)	0.476(334)	0.278(4827)	non tumor-specific	alt_3prime	yes
UN_FAM83A_LS0002	chr8:123179959|123180132:+	FAM83A	family with sequence similarity 83 member A	protein coding gene	no	.	2.932	0.214	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_TBC1D7_LS0015	chr6:13305289|13306398:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	.	9.586	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	alt_3prime	no
FER1L4_LS014	chr20:35567654|35576167:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	ENST00000611673.4	0.386	0.045	0.839	0.076(728)	0.016(11)	0.196(3414)	non tumor-specific	nAS	yes
UN_ANKFY1_LS0039	chr17:4185046|4194978:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	.	2.878	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_AC004949.1_UP_LS0002	chr7:10940117|10940281:-	AC004949.1	-	lncRNA gene	no	.	4.840	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BLMH_LS015	chr17:30289482|30291311:-	BLMH	bleomycin hydrolase	protein coding gene	no	ENST00000261714.10;ENST00000584603.2;ENST00000580709.1	32.704	20.605	21.462	0.978(9373)	0.993(697)	0.978(16998)	non tumor-specific	alt_5prime;exon_skip	yes
AC023403.1_LS002	chr8:20350395|20359726:+	AC023403.1	-	lncRNA gene	no	ENST00000521139.1	2.077	0.110	0.747	0.018(174)	0.004(3)	0.058(1010)	non tumor-specific	nAS	yes
STEAP1_LS003	chr7:90161317|90161914:+	STEAP1	STEAP family member 1	protein coding gene	no	ENST00000297205.6;ENST00000475789.1;ENST00000412573.1	46.600	26.524	12.551	0.903(8655)	0.981(689)	0.884(15368)	non tumor-specific	exon_skip	yes
AC013652.1_LS001	chr15:38865722|38867970:-	AC013652.1	-	lncRNA gene	no	ENST00000560197.5	3.632	0.778	1.039	0.041(397)	0.02(14)	0.312(5420)	non tumor-specific	nAS	yes
UN_ZSWIM4_LS0060	chr19:13831365|13831506:-	ZSWIM4	zinc finger SWIM-type containing 4	protein coding gene	no	.	1.500	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
LMNA_LS008	chr1:156091097|156093709:+	LMNA	lamin A/C	protein coding gene	no	ENST00000470835.1	0.411	0.157	0.723	0.052(499)	0.031(22)	0.1(1731)	non tumor-specific	exon_skip	yes
COL12A1_LS048	chr6:75137579|75138448:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000419671.1	0.405	0.146	0.778	0.192(1836)	0.141(99)	0.152(2648)	non tumor-specific	exon_skip	yes
HNRNPH1_LS006	chr5:179614959|179616126:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	ENST00000329433.10;ENST00000524179.1;ENST00000521720.5;ENST00000329433.10;ENST00000524179.1;ENST00000521720.5	7.584	5.350	32.844	0.96(9193)	0.933(655)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
P3H4_LS001	chr17:41802423|41802711:-	P3H4	prolyl 3-hydroxylase family member 4 (inactive)	protein coding gene	no	ENST00000465097.1	0.567	0.216	0.819	0.733(7026)	0.661(464)	0.353(6128)	non tumor-specific	intron_retention	yes
UN_RPS18P13_UP_LS0001	chr19:18044038|18045440:+	RPS18P13	ribosomal protein S18 pseudogene 13	pseudogene	no	.	2.024	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AC020611.2_LS002	chr12:64042940|64097486:-	AC020611.2	-	lncRNA gene	no	ENST00000535594.1	0.300	0.001	0.618	0.007(65)	0.001(1)	0.01(166)	non tumor-specific	nAS	yes
COL18A1_LS016	chr21:45478353|45479902:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	157.534	146.389	106.857	0.984(9430)	0.997(700)	0.977(16986)	non tumor-specific	exon_skip	yes
ALDH3B2_LS005	chr11:67663399|67664421:-	ALDH3B2	aldehyde dehydrogenase 3 family member B2	protein coding gene	no	ENST00000531248.1;ENST00000531248.1	0.483	0.154	0.840	0.31(2967)	0.252(177)	0.08(1390)	non tumor-specific	alt_5prime;exon_skip	yes
PARG_LS025	chr10:49941824|49970167:-	PARG	poly(ADP-ribose) glycohydrolase	protein coding gene	no	ENST00000402038.7	0.009	0.008	0.644	0.36(3448)	0.36(253)	0.015(264)	non tumor-specific	nAS	yes
TRPC3_LS012	chr4:121925206|121932271:-	TRPC3	transient receptor potential cation channel subfamily C member 3	protein coding gene	no	ENST00000264811.9;ENST00000379645.7;ENST00000513531.1	1.583	0.701	1.189	0.08(762)	0.075(53)	0.364(6321)	non tumor-specific	exon_skip	yes
PRMT5_LS014	chr14:22924183|22924270:-	PRMT5	protein arginine methyltransferase 5	protein coding gene	yes	ENST00000324366.12;ENST00000397441.6;ENST00000397440.8;ENST00000216350.12;ENST00000553915.5;ENST00000553897.5	123.346	63.578	58.672	0.992(9501)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime	yes
UN_ABCF2_LS0029	chr7:151215099|151215604:-	ABCF2	ATP binding cassette subfamily F member 2	protein coding gene	no	.	15.218	1.295	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ENTPD5_LS022	chr14:74004725|74011091:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.;.	0.876	0.179	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_C1orf87_UP_LS0016	chr1:60367932|60442278:-	C1orf87	chromosome 1 open reading frame 87	protein coding gene	no	.	1.352	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
KIRREL2_LS007	chr19:35858864|35859481:+	KIRREL2	kirre like nephrin family adhesion molecule 2	protein coding gene	no	ENST00000586102.7;ENST00000592409.5;ENST00000347900.10;ENST00000360202.9;ENST00000262625.7	4.846	1.177	1.274	0.133(1276)	0.083(58)	0.176(3051)	non tumor-specific	exon_skip	yes
UN_ZNF254_LS0046	chr19:24049548|24091901:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	1.568	0.539	0.000	0.012(119)	0.017(12)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AL358075.4_LS0008	chr1:46066964|46077515:-	AL358075.4	-	protein coding gene	no	.	7.474	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SKAP2_LS020	chr7:26854890|26864842:-	SKAP2	src kinase associated phosphoprotein 2	protein coding gene	no	ENST00000481204.5	0.109	0.046	0.647	0.506(4850)	0.664(466)	0.026(455)	non tumor-specific	nAS	yes
UN_CNN2P2_UP_LS0010	chr9:40473774|40491227:-	CNN2P2	calponin 2 pseudogene 2	pseudogene	no	.	1.797	3.141	0.000	0.021(199)	0.148(104)	0(0)	non tumor-specific	nAS	no
WDHD1_LS021	chr14:55000992|55002093:-	WDHD1	WD repeat and HMG-box DNA binding protein 1	protein coding gene	no	ENST00000360586.7;ENST00000420358.2	5.486	1.256	1.249	0.718(6876)	0.594(417)	0.594(10333)	non tumor-specific	nAS	yes
TMEM79_LS010	chr1:156285433|156286260:+	TMEM79	transmembrane protein 79	protein coding gene	no	.;.	0.357	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ROR1_LS0026	chr1:64110793|64171209:-	ROR1	RAR related orphan receptor A	protein coding gene	no	.	2.828	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
SPDYE10P_LS002	chr7:73106444|73106567:-	SPDYE10P	speedy/RINGO cell cycle regulator family member E10, pseudogene	pseudogene	no	ENST00000576332.5;ENST00000612005.1	0.341	0.153	0.685	0.1(962)	0.124(87)	0(1)	non tumor-specific	nAS	yes
UN_VSIG10_LS0038	chr12:118101227|118102989:-	VSIG10	V-set and immunoglobulin domain containing 10	protein coding gene	no	.	1.258	1.127	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
NFATC1_LS002	chr18:79396351|79433579:+	NFATC1	nuclear factor of activated T cells 1	protein coding gene	no	ENST00000397790.6	0.023	0.013	0.655	0.195(1868)	0.234(164)	0.052(912)	non tumor-specific	exon_skip	yes
KANK3_LS008	chr19:8333230|8333724:-	KANK3	KN motif and ankyrin repeat domains 3	protein coding gene	no	ENST00000330915.7;ENST00000593649.5;ENST00000610351.1;ENST00000595639.1	5.978	9.654	21.694	0.888(8509)	0.97(681)	0.949(16497)	non tumor-specific	nAS	yes
UN_CEP170B_LS0036	chr14:104884549|104885188:+	CEP170B	centrosomal protein 170B	protein coding gene	no	.	1.817	0.684	0.000	0.101(968)	0.056(39)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TCF12_LS039	chr15:57263274|57273033:+	TCF12	transcription factor 12	protein coding gene	no	ENST00000559703.1;ENST00000561420.5	4.141	1.328	2.768	0.09(858)	0.083(58)	0.88(15298)	non tumor-specific	alt_3prime	yes
LINC02104_LS001	chr5:39520462|39521519:+	LINC02104	long intergenic non-protein coding RNA 2104	lncRNA gene	no	ENST00000604954.5	1.519	0.669	1.414	0.281(2692)	0.524(368)	0.499(8671)	non tumor-specific	nAS	yes
PKD1_LS074	chr16:2113292|2114170:-	PKD1	polycystin 1, transient receptor potential channel interacting	protein coding gene	yes	ENST00000262304.8;ENST00000423118.5;ENST00000565639.6;ENST00000568591.5	4.215	3.663	21.272	0.761(7287)	0.819(575)	0.961(16697)	non tumor-specific	nAS	yes
USP19_LS038	chr3:49117361|49117437:-	USP19	ubiquitin specific peptidase 19	protein coding gene	no	ENST00000417901.5;ENST00000434032.6;ENST00000306026.5;ENST00000488993.5;ENST00000491859.5	15.791	14.077	20.142	0.963(9231)	0.987(693)	0.976(16973)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SEC14L1_LS023	chr17:77193549|77194677:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	ENST00000589827.5;ENST00000392476.6;ENST00000430767.8;ENST00000585618.5;ENST00000436233.8;ENST00000443798.8;ENST00000591786.5;ENST00000591437.5;ENST00000588616.6;ENST00000431431.6;ENST00000589202.1	38.446	36.616	36.922	0.982(9408)	0.993(697)	0.979(17017)	non tumor-specific	exon_skip	yes
UN_TMED9_LS0030	chr5:177595580|177595944:-	TMED9	transmembrane p24 trafficking protein 9	protein coding gene	no	.	11.515	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ANK3_LS064	chr10:60146021|60166591:-	ANK3	ankyrin 3	protein coding gene	no	ENST00000503366.5;ENST00000474360.1	0.498	1.906	1.777	0.593(5679)	0.801(562)	0.578(10046)	non tumor-specific	exon_skip	yes
UN_AC005865.2_LS0013	chr12:3306868|3307210:-	AC005865.2	-	pseudogene	no	.	4.207	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
FEZ2_LS018	chr2:36560865|36578597:-	FEZ2	fasciculation and elongation protein zeta 2	protein coding gene	no	ENST00000379245.8	9.423	10.642	4.445	0.895(8578)	0.934(656)	0.929(16149)	non tumor-specific	alt_3prime;exon_skip	yes
L1CAM_LS013	chrX:153865500|153865704:-	L1CAM	L1 cell adhesion molecule	protein coding gene	no	ENST00000361981.7;ENST00000370060.6;ENST00000370055.5;ENST00000361699.8;ENST00000474853.1	27.454	17.203	8.228	0.588(5632)	0.749(526)	0.86(14955)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM132D_LS0033	chr12:129538875|129538916:+	TMEM132D	transmembrane protein 132D	protein coding gene	no	.	11.660	0.413	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MED15_LS0043	chr22:20572155|20573785:+	MED15	mediator complex subunit 15	protein coding gene	no	.	4.278	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PRSS22_LS0018	chr16:2855340|2855574:-	PRSS22	serine protease 22	protein coding gene	no	.	7.874	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_EEF1A1_LS0052	chr6:73517759|73517801:+	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	protein coding gene	yes	.	137.902	31.550	0.000	0.002(19)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_ZBTB46_LS0055	chr20:63790790|63792491:-	ZBTB46	zinc finger and BTB domain containing 46	protein coding gene	no	.	0.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MT-ND5_LS0061	chrM:13008|13052:+	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	protein coding gene	no	.	979.184	90.109	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF333_LS021	chr19:14707965|14708328:+	ZNF333	zinc finger protein 333	protein coding gene	no	ENST00000601134.5	0.381	0.116	0.727	0.028(272)	0.033(23)	0.226(3930)	non tumor-specific	exon_skip;intron_retention	yes
UN_LTO1_LS0027	chr11:69654384|69667895:-	LTO1	LTO1 maturation factor of ABCE1	protein coding gene	no	.	3.339	0.543	0.000	0.038(365)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
EWSAT1_LS003	chr15:69074674|69089538:+	EWSAT1	Ewing sarcoma associated transcript 1	lncRNA gene	no	ENST00000558369.5	0.085	0.367	0.762	0.002(21)	0.001(1)	0.004(76)	non tumor-specific	nAS	yes
Z83844.2_LS002	chr22:37643761|37648323:-	Z83844.2	-	lncRNA gene	no	ENST00000456099.1	3.602	0.270	0.708	0.011(106)	0.006(4)	0.062(1072)	non tumor-specific	nAS	yes
SMPD4_LS051	chr2:130176637|130181530:-	SMPD4	sphingomyelin phosphodiesterase 4	protein coding gene	no	ENST00000431183.6;ENST00000454468.5;ENST00000412570.5;ENST00000433118.5;ENST00000351288.10;ENST00000409031.5;ENST00000473720.5;ENST00000439029.5	20.920	10.704	16.449	0.963(9227)	0.987(693)	0.976(16970)	non tumor-specific	alt_5prime;exon_skip	yes
AKAP8L_LS015	chr19:15398703|15399302:-	AKAP8L	A-kinase anchoring protein 8 like	protein coding gene	no	ENST00000595879.5	1.772	0.641	2.075	0.657(6290)	0.679(477)	0.834(14504)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC079061.1_LS001	chr8:109644222|109645118:+	AC079061.1	-	lncRNA gene	no	ENST00000499579.1	0.284	0.300	0.866	0.04(388)	0.073(51)	0.058(1012)	non tumor-specific	nAS	yes
AP4M1_LS002	chr7:100101968|100102246:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	ENST00000394061.7	0.081	0.025	0.882	0.51(4882)	0.474(333)	0.445(7739)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_STX18-AS1_LS0035	chr4:4627436|4643214:-	STX18-AS1	STX18 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.902	0.747	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	nAS	no
TBX5_LS010	chr12:114403936|114407814:-	TBX5	T-box transcription factor 5	protein coding gene	yes	ENST00000310346.8	0.503	0.282	1.983	0.087(837)	0.254(178)	0.221(3836)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IGFBP3_LS0003	chr7:45912588|45912642:-	IGFBP3	insulin like growth factor binding protein 3	protein coding gene	yes	.	175.146	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AHSA1_LS005	chr14:77459806|77462160:+	AHSA1	activator of HSP90 ATPase activity 1	protein coding gene	no	ENST00000555133.5;ENST00000216479.7;ENST00000535854.6;ENST00000554156.5;ENST00000556963.5;ENST00000556866.5;ENST00000553374.5;ENST00000555457.5;ENST00000555729.3	227.053	123.105	144.578	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM15_LS016	chr1:155053988|155054150:+	ADAM15	ADAM metallopeptidase domain 15	protein coding gene	no	ENST00000473905.6;ENST00000480331.5;ENST00000527418.5;ENST00000529473.5;ENST00000526491.5;ENST00000356955.6;ENST00000449910.6;ENST00000359280.8;ENST00000360674.8;ENST00000368412.7;ENST00000355956.6;ENST00000271836.10;ENST00000461564.6;ENST00000487956.6;ENST00000531831.5;ENST00000531455.5;ENST00000447332.3;ENST00000472434.5	109.058	68.920	80.350	0.991(9494)	0.996(699)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
POLR1E_LS004	chr9:37489400|37492282:+	POLR1E	RNA polymerase I subunit E	protein coding gene	no	ENST00000442009.6	1.343	1.126	0.862	0.249(2388)	0.303(213)	0.362(6286)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ADAM17_LS023	chr2:9536828|9543153:-	ADAM17	ADAM metallopeptidase domain 17	protein coding gene	no	ENST00000310823.8;ENST00000497134.6;ENST00000648548.1;ENST00000649227.1;ENST00000648857.1;ENST00000647622.1;ENST00000649972.1;ENST00000650241.1;ENST00000618923.2;ENST00000478059.1;ENST00000648002.1	23.675	11.729	9.660	0.926(8873)	0.959(673)	0.968(16824)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NDP_UP_LS0010	chrX:44031069|44251593:-	NDP	norrin cystine knot growth factor NDP	protein coding gene	no	.	0.915	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
AGPS_LS009	chr2:177445626|177461893:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	ENST00000264167.8;ENST00000637633.1;ENST00000642466.1	43.711	28.438	15.533	0.97(9290)	0.989(694)	0.977(16984)	non tumor-specific	exon_skip	yes
AC139493.2_LS014	chr5:176183301|176185101:-	AC139493.2	-	lncRNA gene	no	ENST00000508056.5;ENST00000512260.5	0.639	0.146	1.273	0.109(1044)	0.068(48)	0.251(4356)	non tumor-specific	nAS	yes
UN_SLC25A19_LS0019	chr17:75288461|75289010:-	SLC25A19	solute carrier family 25 member 19	protein coding gene	no	.	0.404	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SLC39A14_LS020	chr8:22417835|22433891:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	ENST00000240095.10	0.222	0.050	0.637	0.068(652)	0.07(49)	0.058(1009)	non tumor-specific	exon_skip	yes
UN_UTP20_LS0021	chr12:101329449|101334425:+	UTP20	UTP20 small subunit processome component	protein coding gene	no	.	1.070	0.136	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CX3CL1_UP_LS0004	chr16:57357932|57358787:+	CX3CL1	C-X3-C motif chemokine ligand 1	protein coding gene	no	.	0.940	0.188	0.000	0.011(103)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_GRAMD1B_LS0011	chr11:123428816|123429068:-	GRAMD1B	GRAM domain containing 1B	protein coding gene	no	.	1.262	0.098	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMARCA2_LS032	chr9:2077776|2079906:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000635739.1	1.521	0.050	0.640	0.001(6)	0.001(1)	0.058(1013)	non tumor-specific	nAS	yes
PPM1J_LS006	chr1:112711384|112711971:-	PPM1J	protein phosphatase, Mg2+/Mn2+ dependent 1J	protein coding gene	no	ENST00000309276.10;ENST00000464951.1	6.320	2.889	7.981	0.71(6801)	0.712(500)	0.946(16452)	non tumor-specific	alt_3prime	yes
IPMK_LS004	chr10:58227139|58237729:-	IPMK	inositol polyphosphate multikinase	protein coding gene	no	ENST00000373935.3	6.203	4.101	1.953	0.761(7287)	0.863(606)	0.791(13742)	non tumor-specific	nAS	yes
UN_AC022613.1_LS0007	chr15:29677416|29680601:+	AC022613.1	-	lncRNA gene	no	.	3.935	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LMTK3_LS0030	chr19:48494105|48497393:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	.	1.846	0.198	0.000	0.015(139)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
AC138932.1_LS002	chr16:14917611|14917733:+	AC138932.1	-	pseudogene	no	ENST00000534164.5	4.953	2.230	0.789	0.696(6669)	0.734(515)	0.345(6001)	non tumor-specific	nAS	yes
UN_LINC00400_UP_LS0005	chr13:43021649|43065686:+	LINC00400	long intergenic non-protein coding RNA 400	lncRNA gene	no	.	3.686	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ZC3H14_LS0039	chr14:88608307|88609267:+	ZC3H14	zinc finger CCCH-type containing 14	protein coding gene	no	.	1.761	0.151	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
ADAM7_LS012	chr8:24489333|24490799:+	ADAM7	ADAM metallopeptidase domain 7	protein coding gene	no	ENST00000175238.10;ENST00000380789.5;ENST00000520720.1	6.467	3.109	0.714	0.012(114)	0.016(11)	0.004(70)	non tumor-specific	nAS	yes
UN_MPL_LS0006	chr1:43349359|43350615:+	MPL	MPL proto-oncogene, thrombopoietin receptor	protein coding gene	yes	.	2.671	0.193	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TMPRSS13_LS0021	chr11:117918666|117918712:+	TMPRSS13	transmembrane serine protease 13	protein coding gene	no	.	2.114	0.335	0.000	0.025(235)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AL137793.1_UP_LS0007	chr1:229102875|229122726:-	AL137793.1	-	lncRNA gene	no	.	4.292	0.268	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010486.2_UP_LS0009	chr5:84490769|84492156:+	AC010486.2	-	lncRNA gene	no	.	0.979	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
AP005203.1_LS004	chr18:5003289|5003975:-	AP005203.1	-	lncRNA gene	no	ENST00000585028.5;ENST00000584204.1	1.961	0.094	0.812	0.004(43)	0.001(1)	0.193(3362)	non tumor-specific	nAS	yes
UN_ADCY9_LS0004	chr16:3963981|3964063:+	ADCY9	adenylate cyclase 9	protein coding gene	no	.	2.107	0.791	0.000	0.008(72)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_CORO6_LS0009	chr17:29617374|29617478:-	CORO6	coronin 6	protein coding gene	no	.	2.897	0.339	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SZT2_LS0121	chr1:43451026|43451685:+	SZT2	SZT2 subunit of KICSTOR complex	protein coding gene	no	.	3.359	0.339	0.000	0.012(115)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ATP5F1E_LS0008	chr20:59030429|59030621:-	ATP5F1E	ATP synthase F1 subunit epsilon	protein coding gene	no	.	3.476	2.143	0.000	0.002(22)	0.009(6)	0(0)	non tumor-specific	nAS	no
NKG7_LS001	chr19:51371835|51371940:-	NKG7	natural killer cell granule protein 7	protein coding gene	no	ENST00000595217.1;ENST00000221978.9;ENST00000593572.5;ENST00000595157.1	20.792	8.334	6.263	0.936(8972)	0.963(676)	0.914(15885)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_SLC12A7_LS0074	chr5:1061073|1061398:-	SLC12A7	solute carrier family 12 member 7	protein coding gene	no	.	12.735	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
CTRC_LS004	chr1:15440590|15442447:+	CTRC	chymotrypsin C	protein coding gene	no	ENST00000375949.4;ENST00000483406.1	21.348	33.339	2.864	0.064(610)	0.024(17)	0.746(12971)	non tumor-specific	exon_skip	yes
UN_AC246787.2_UP_LS0493	chr14:105626013|105644546:+	AC246787.2	-	lncRNA gene	no	.	81.719	3.526	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
MRE11_LS023	chr11:94478876|94485924:-	MRE11	MRE11 homolog, double strand break repair nuclease	protein coding gene	no	ENST00000541157.5;ENST00000541157.5	0.110	0.076	0.696	0.209(2007)	0.217(152)	0.102(1777)	non tumor-specific	alt_5prime;exon_skip	yes
PRKCE_LS029	chr2:46007661|46010344:+	PRKCE	protein kinase C epsilon	protein coding gene	yes	ENST00000306156.7;ENST00000394874.1	7.523	8.870	6.743	0.793(7593)	0.942(661)	0.968(16833)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_RAB14_LS0012	chr9:121192224|121201639:-	RAB14	RAB14, member RAS oncogene family	protein coding gene	no	.	3.129	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_APOO_LS0024	chrX:23879034|23907694:-	APOO	apolipoprotein O	protein coding gene	no	.	2.457	1.062	0.000	0.015(143)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_KLHL13_LS0015	chrX:117972843|118028424:-	KLHL13	kelch like family member 13	protein coding gene	no	.	0.662	0.089	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NSMAF_LS0008	chr8:58590046|58590867:-	NSMAF	neutral sphingomyelinase activation associated factor	protein coding gene	no	.	27.604	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HAP1_LS001	chr17:41718026|41724766:-	HAP1	huntingtin-associated protein 1, pseudogene	protein coding gene	no	ENST00000458656.5;ENST00000442364.1	0.748	0.295	1.627	0.255(2445)	0.201(141)	0.322(5595)	non tumor-specific	nAS	yes
CEP95_LS035	chr17:64534737|64536602:+	CEP95	centrosomal protein 95	protein coding gene	no	ENST00000556440.6;ENST00000553412.5;ENST00000553956.6	46.518	20.983	61.959	0.989(9472)	0.996(699)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_DEDD2_LS0004	chr19:42198827|42198896:+	DEDD2	death effector domain containing 2	protein coding gene	no	.	4.646	0.091	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RNY3P7_UP_LS0001	chr13:77476057|77555857:+	RNY3P7	RNY3 pseudogene 7	small non-coding RNA gene	no	.	2.459	0.079	0.000	0.02(196)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_AC132008.2_LS0052	chr3:197624529|197627780:-	AC132008.2	-	pseudogene	no	.	0.614	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
PPM1K_LS017	chr4:88278642|88284406:-	PPM1K	protein phosphatase, Mg2+/Mn2+ dependent 1K	protein coding gene	no	ENST00000608933.5;ENST00000295908.11;ENST00000510548.6;ENST00000506423.1;ENST00000514204.1	2.988	4.028	6.311	0.819(7843)	0.956(671)	0.942(16378)	non tumor-specific	exon_skip	yes
UN_ATAD3B_UP_LS0008	chr1:1448419|1450681:+	ATAD3B	ATPase family AAA domain containing 3B	protein coding gene	no	.	0.884	0.018	0.000	0.01(100)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_CRMP1_LS0058	chr4:5811773|5812581:-	CRMP1	collapsin response mediator protein 1	protein coding gene	no	.	1.900	2.369	0.000	0.014(136)	0.04(28)	0(0)	non tumor-specific	nAS	no
UN_AC006453.4_UP_LS0020	chr2:88860609|89142576:+	AC006453.4	-	pseudogene	no	.	36.329	9.735	0.000	0.01(97)	0.007(5)	0(0)	non tumor-specific	nAS	no
HELZ2_LS004	chr20:63560327|63560479:-	HELZ2	helicase with zinc finger 2	protein coding gene	no	ENST00000427522.6;ENST00000467148.1	52.951	19.620	14.288	0.987(9461)	0.994(698)	0.973(16904)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_COLCA2_LS0027	chr11:111300133|111300527:+	COLCA2	colorectal cancer associated 2	protein coding gene	no	.	3.082	1.119	0.000	0.019(182)	0.037(26)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_TEAD3_LS0066	chr6:35475099|35475336:-	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	13.266	0.197	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
ZSWIM7_LS013	chr17:15978163|15987266:-	ZSWIM7	zinc finger SWIM-type containing 7	protein coding gene	no	.;.	5.194	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
DDX39A_LS019	chr19:14412678|14413013:-	DDX39A	DExD-box helicase 39A	protein coding gene	no	ENST00000324340.13;ENST00000589318.5;ENST00000588692.5;ENST00000242776.8;ENST00000588542.5;ENST00000454233.6;ENST00000590315.5;ENST00000590260.5;ENST00000590239.5;ENST00000586993.5;ENST00000592632.5;ENST00000591275.5;ENST00000590696.1	115.792	36.096	56.824	0.996(9539)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LINGO1_LS014	chr15:77796053|77820034:-	LINGO1	leucine rich repeat and Ig domain containing 1	protein coding gene	no	ENST00000564066.1	0.252	0.046	1.203	0.086(820)	0.037(26)	0.087(1506)	non tumor-specific	alt_5prime	yes
CCZ1B_LS019	chr7:6814845|6819766:-	CCZ1B	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated	protein coding gene	no	ENST00000316731.12;ENST00000626257.2;ENST00000490178.1	93.962	44.847	25.372	0.995(9535)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_C6orf48_UP_LS0186	chr6:31817181|31829196:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	131.882	30.233	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	nAS	no
LIPA_LS022	chr10:89293668|89342561:-	LIPA	secretoglobin family 1D member 1	protein coding gene	no	ENST00000463623.1;ENST00000463623.1	0.142	0.028	1.316	0.049(466)	0.017(12)	0.108(1873)	non tumor-specific	alt_5prime;exon_skip	yes
GBF1_LS018	chr10:102362664|102363710:+	GBF1	golgi brefeldin A resistant guanine nucleotide exchange factor 1	protein coding gene	no	.;.	2.173	0.155	0.000	0.009(91)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LINC01515_LS003	chr10:65570759|65571425:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000599409.5;ENST00000608678.5	2.384	0.948	1.414	0.358(3434)	0.462(324)	0.581(10107)	non tumor-specific	nAS	yes
GOLGA1_LS025	chr9:124938866|124940106:-	GOLGA1	golgin A1	protein coding gene	no	ENST00000373555.8	10.083	7.368	8.816	0.904(8658)	0.973(683)	0.972(16892)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_CARMIL1_LS0032	chr6:25520337|25537855:+	CARMIL1	capping protein regulator and myosin 1 linker 1	protein coding gene	no	.	2.460	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
AL078590.3_LS012	chr6:134532095|134534439:-	AL078590.3	-	lncRNA gene	no	ENST00000607531.5	0.302	0.033	0.964	0.042(400)	0.038(27)	0.065(1124)	non tumor-specific	nAS	yes
UN_AC005670.2_LS0053	chr17:47024751|47047146:+	AC005670.2	-	protein coding gene	no	.	0.942	0.195	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SRPK2_LS0097	chr7:105169265|105202432:-	SRPK2	SRSF protein kinase 2	protein coding gene	no	.	1.336	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SAGE1_LS001	chrX:135896329|135901559:+	SAGE1	sarcoma antigen 1	protein coding gene	no	ENST00000324447.7;ENST00000537770.5;ENST00000370709.3	4.954	0.202	0.899	0.043(410)	0.001(1)	0.025(431)	non tumor-specific	nAS	yes
TTC9C_LS013	chr11:62738490|62739976:+	TTC9C	tetratricopeptide repeat domain 9C	protein coding gene	no	ENST00000532276.1;ENST00000532276.1;ENST00000532276.1	1.535	0.551	1.259	0.465(4455)	0.358(251)	0.611(10613)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_USP25_LS0048	chr21:15860670|15864268:+	USP25	ubiquitin specific peptidase 25	protein coding gene	no	.	1.479	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TRAPPC10_LS005	chr21:44037927|44052280:+	TRAPPC10	trafficking protein particle complex 10	protein coding gene	no	ENST00000380221.7;ENST00000291574.8;ENST00000422875.5;ENST00000380221.7;ENST00000291574.8;ENST00000422875.5	18.898	13.822	13.380	0.956(9161)	0.993(697)	0.976(16973)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IGLV3-1_LS0004	chr22:22880926|22881097:+	IGLV3-1	immunoglobulin lambda variable 3-1	no	no	.	156.664	32.919	0.000	0.004(40)	0.01(7)	0(0)	non tumor-specific	nAS	no
ABCD3_LS028	chr1:94499034|94499495:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	ENST00000370214.8;ENST00000484213.1	62.934	66.883	36.215	0.99(9484)	0.994(698)	0.975(16948)	non tumor-specific	alt_3prime;exon_skip	yes
UN_VWF_UP_LS0021	chr12:6150090|6200536:-	VWF	von Willebrand factor	protein coding gene	no	.	1.280	0.237	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	nAS	no
ACIN1_LS006	chr14:23063074|23063436:-	ACIN1	apoptotic chromatin condensation inducer 1	protein coding gene	no	ENST00000557515.5;ENST00000473758.5;ENST00000338631.10;ENST00000357481.6;ENST00000605057.5;ENST00000262710.5;ENST00000457657.5;ENST00000397341.7;ENST00000555053.5;ENST00000555478.5;ENST00000554680.5	94.549	52.498	149.353	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_NFATC4_LS0026	chr14:24376090|24376294:+	NFATC4	nuclear factor of activated T cells 4	protein coding gene	no	.	7.066	2.166	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_RF01210_UP_LS0024	chr2:172625133|172627829:+	RF01210	-	small non-coding RNA gene	no	.	3.978	0.138	0.000	0.032(304)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
AC145350.2_LS002	chr16:33046757|33060276:-	AC145350.2	-	lncRNA gene	no	ENST00000564165.1	2.244	0.013	0.638	0.004(39)	0.001(1)	0.008(132)	non tumor-specific	nAS	yes
UN_AL512324.3_LS0005	chr10:45191940|45193789:-	AL512324.3	-	pseudogene	no	.	1.775	0.068	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM182B_LS011	chr20:25775336|25859740:-	FAM182B	family with sequence similarity 182 member B	lncRNA gene	no	.;.	2.146	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPS2P25_UP_LS0001	chr5:85664468|85666919:+	RPS2P25	ribosomal protein S2 pseudogene 25	pseudogene	no	.	3.796	0.102	0.000	0.074(710)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PILRB_LS0002	chr7:100352378|100352564:+	PILRB	paired immunoglobin like type 2 receptor beta	protein coding gene	no	.	12.337	1.040	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_EPN1_LS0019	chr19:55676054|55677046:+	EPN1	epsin 1	protein coding gene	no	.	2.420	1.895	0.000	0.184(1761)	0.184(129)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
KMT2D_LS045	chr12:49044965|49045920:-	KMT2D	lysine methyltransferase 2D	protein coding gene	no	ENST00000301067.11	4.373	2.251	6.184	0.704(6747)	0.816(573)	0.94(16336)	non tumor-specific	nAS	yes
RNF214_LS018	chr11:117282536|117282746:+	RNF214	ring finger protein 214	protein coding gene	no	ENST00000300650.8;ENST00000531287.5;ENST00000531452.5;ENST00000524917.5;ENST00000534709.1	29.537	17.512	24.228	0.994(9520)	0.996(699)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_AC026434.2_UP_LS0007	chr5:61904550|61906562:-	AC026434.2	-	pseudogene	no	.	1.801	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRTC1_LS0035	chr19:18772098|18774900:+	CRTC1	CREB regulated transcription coactivator 1	protein coding gene	yes	.	1.978	0.857	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
NNT_LS010	chr5:43613650|43615848:+	NNT	nicotinamide nucleotide transhydrogenase	protein coding gene	no	ENST00000515208.1	0.142	0.106	0.654	0.144(1379)	0.245(172)	0.068(1189)	non tumor-specific	alt_5prime	yes
DOK4_LS006	chr16:57475219|57475850:-	DOK4	docking protein 4	protein coding gene	no	ENST00000561659.5	0.217	0.137	0.680	0.516(4944)	0.577(405)	0.143(2478)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF98_LS0016	chr19:22436006|22514364:-	ZNF98	zinc finger protein 98	protein coding gene	no	.	2.184	0.610	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AC073320.1_UP_LS0004	chr7:129774884|129777642:+	AC073320.1	-	lncRNA gene	no	.	1.547	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
AC004771.5_LS001	chr17:4986494|4986812:+	AC004771.5	-	lncRNA gene	no	ENST00000575985.1	0.218	0.070	0.704	0.063(600)	0.06(42)	0.064(1117)	non tumor-specific	nAS	yes
UN_PPP1R12B_LS0066	chr1:202552057|202562778:+	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	0.958	0.019	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ARL2-SNX15_LS0021	chr11:65018733|65020325:+	ARL2-SNX15	ARL2-SNX15 readthrough (NMD candidate)	protein coding gene	no	.	12.144	3.954	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00894_LS0011	chrX:149944570|149945348:+	LINC00894	long intergenic non-protein coding RNA 894	lncRNA gene	no	.	1.524	0.338	0.000	0.01(97)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AC126768.1_UP_LS0043	chr5:2667319|2668416:-	AC126768.1	-	lncRNA gene	no	.	8.766	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NT5C2_LS0062	chr10:103174982|103177518:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	.	3.677	0.288	0.000	0.006(62)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TLK2_LS011	chr17:62481206|62520773:+	TLK2	tousled like kinase 2	protein coding gene	no	ENST00000579450.5;ENST00000582195.5;ENST00000580705.5;ENST00000346027.9;ENST00000326270.13;ENST00000343388.11;ENST00000581041.5	9.678	6.759	9.071	0.93(8908)	0.959(673)	0.971(16879)	non tumor-specific	exon_skip	yes
CYBC1_LS033	chr17:82447621|82450700:-	CYBC1	cytochrome b-245 chaperone 1	protein coding gene	no	ENST00000584503.5;ENST00000582608.5;ENST00000584503.5;ENST00000582608.5	0.093	0.017	1.046	0.69(6612)	0.648(455)	0.507(8804)	non tumor-specific	alt_3prime;exon_skip	yes
ENDOU_LS001	chr12:47710919|47711633:-	ENDOU	endonuclease, poly(U) specific	protein coding gene	no	ENST00000229003.7;ENST00000422538.7;ENST00000545824.2	4.373	17.459	2.554	0.149(1425)	0.15(105)	0.721(12529)	non tumor-specific	exon_skip	yes
U51244.1_LS001	chr2:45674907|45675310:-	U51244.1	-	lncRNA gene	no	ENST00000423120.1	0.299	0.053	0.628	0.031(295)	0.016(11)	0.006(101)	non tumor-specific	nAS	yes
AASDH_LS029	chr4:56384341|56387362:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	ENST00000602986.5;ENST00000451613.5;ENST00000205214.10;ENST00000514745.5;ENST00000503808.5;ENST00000502617.1;ENST00000510012.1	1.733	1.253	3.890	0.86(8241)	0.936(657)	0.923(16047)	non tumor-specific	exon_skip	yes
UN_TSNARE1_LS0136	chr8:142354763|142402987:-	TSNARE1	t-SNARE domain containing 1	protein coding gene	no	.	0.983	0.215	0.000	0.009(89)	0.009(6)	0(0)	non tumor-specific	alt_5prime	no
KIAA1109_LS017	chr4:122207638|122209159:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000424425.5;ENST00000495260.5	2.508	2.495	2.889	0.469(4494)	0.739(519)	0.842(14644)	non tumor-specific	exon_skip	yes
CHD4_LS016	chr12:6578135|6578409:-	CHD4	chromodomain helicase DNA binding protein 4	protein coding gene	no	ENST00000645991.1	29.094	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime	yes
SMARCA4_LS005	chr19:10961174|10980777:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000646510.1;ENST00000429416.8;ENST00000644760.1;ENST00000646510.1;ENST00000429416.8;ENST00000644760.1	0.100	0.199	0.905	0.335(3208)	0.321(225)	0.5(8688)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_TTC17_LS0019	chr11:43396893|43397347:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	.	5.053	1.261	0.000	0.006(59)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	no
APP_LS012	chr21:25982477|25997360:-	APP	amyloid beta precursor protein	protein coding gene	no	ENST00000346798.7;ENST00000439274.6;ENST00000358918.7;ENST00000415997.1	298.874	236.753	193.073	0.991(9492)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
TMEM94_LS033	chr17:75491467|75491691:+	TMEM94	transmembrane protein 94	protein coding gene	no	ENST00000579241.1;ENST00000580918.1	6.444	6.129	11.518	0.957(9171)	0.956(671)	0.976(16960)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TMEM63B_LS0039	chr6:44153843|44154082:+	TMEM63B	transmembrane protein 63B	protein coding gene	no	.	8.772	10.090	0.000	0.006(60)	0.016(11)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
COL15A1_LS044	chr9:99067067|99068555:+	COL15A1	collagen type XV alpha 1 chain	protein coding gene	no	ENST00000375001.7;ENST00000610452.1	63.351	58.525	56.352	0.943(9037)	0.922(647)	0.925(16080)	non tumor-specific	exon_skip	yes
UN_AC114956.2_LS0001	chr5:43514268|43515854:+	AC114956.2	-	lncRNA gene	no	.	4.149	0.054	0.000	0.042(398)	0.004(3)	0(0)	non tumor-specific	nAS	no
LINC01676_LS008	chr1:105606089|105612900:-	LINC01676	long intergenic non-protein coding RNA 1676	lncRNA gene	no	ENST00000610126.2	0.000	0.000	0.676	0(0)	0(0)	0.002(29)	non tumor-specific	nAS	yes
UN_RNU6-493P_UP_LS0015	chrX:80841605|80841915:+	RNU6-493P	RNA, U6 small nuclear 493, pseudogene	small non-coding RNA gene	no	.	1.471	0.125	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLC17A4_LS036	chr6:25778016|25779054:+	SLC17A4	solute carrier family 17 member 4	protein coding gene	no	ENST00000439485.6;ENST00000377905.8;ENST00000397076.2	16.044	5.875	6.394	0.129(1236)	0.164(115)	0.103(1784)	non tumor-specific	alt_3prime;intron_retention	yes
BTBD19_LS014	chr1:44810722|44812039:+	BTBD19	BTB domain containing 19	protein coding gene	no	ENST00000475105.5	0.361	0.129	0.679	0.064(615)	0.048(34)	0.143(2484)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLS1_LS032	chr3:142711625|142711872:+	PLS1	plastin 1	protein coding gene	no	ENST00000457734.6;ENST00000337777.7;ENST00000497002.1	34.706	42.736	2.732	0.862(8256)	0.939(659)	0.749(13011)	non tumor-specific	nAS	yes
UN_GPR158_LS0007	chr10:25292621|25333085:-	GPR158	G protein-coupled receptor 158	protein coding gene	no	.	1.481	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
DENND1A_LS003	chr9:123383913|123403402:-	DENND1A	DENN domain containing 1A	protein coding gene	no	ENST00000373624.6	21.652	15.078	10.080	0.973(9322)	0.987(693)	0.97(16852)	non tumor-specific	exon_skip	yes
UN_AC007333.2_UP_LS0009	chr16:52299866|52342609:-	AC007333.2	-	lncRNA gene	no	.	10.720	0.617	0.000	0.008(81)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC046185.1_LS005	chr17:63707418|63710728:-	AC046185.1	-	protein coding gene	no	ENST00000580553.1	0.065	0.053	0.649	0.438(4194)	0.553(388)	0.045(783)	non tumor-specific	nAS	yes
SDK1_LS017	chr7:4012235|4017171:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	ENST00000404826.6;ENST00000389531.7;ENST00000615806.4	6.349	2.807	2.448	0.584(5595)	0.712(500)	0.72(12517)	non tumor-specific	nAS	yes
LVRN_LS021	chr5:116015419|116015628:+	LVRN	laeverin	protein coding gene	no	ENST00000504467.5;ENST00000395528.6;ENST00000357872.8;ENST00000514509.5;ENST00000503329.5;ENST00000512314.5;ENST00000503203.5;ENST00000515454.5	3.783	1.813	1.750	0.027(262)	0.125(88)	0.509(8840)	non tumor-specific	nAS	yes
UN_AC068587.4_LS0137	chr8:12601854|12605392:-	AC068587.4	-	lncRNA gene	no	.	3.544	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRTFB_LS0004	chr16:14071406|14079290:+	MRTFB	myocardin related transcription factor B	protein coding gene	no	.	0.855	0.272	0.000	0.019(182)	0.024(17)	0(0)	non tumor-specific	alt_5prime	no
NUGGC_LS011	chr8:28058276|28060426:-	NUGGC	nuclear GTPase, germinal center associated	protein coding gene	no	ENST00000413272.6	2.798	3.839	1.319	0.157(1500)	0.396(278)	0.237(4116)	non tumor-specific	exon_skip;mutex_exons	yes
AC008752.2_LS001	chr19:9834678|9834864:-	AC008752.2	-	lncRNA gene	no	ENST00000591174.1	0.647	0.351	0.857	0.175(1681)	0.215(151)	0.264(4590)	non tumor-specific	nAS	yes
UN_AASDH_LS0026	chr4:56384341|56385581:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	.	0.852	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM119_UP_LS0009	chr12:108633886|108652272:-	TMEM119	transmembrane protein 119	protein coding gene	no	.	0.861	0.394	0.000	0.02(193)	0.017(12)	0(0)	non tumor-specific	nAS	no
CORO7_LS047	chr16:4413404|4415715:-	CORO7	coronin 7	protein coding gene	no	ENST00000571227.5;ENST00000572026.5	0.162	0.120	0.934	0.283(2715)	0.182(128)	0.352(6122)	non tumor-specific	alt_5prime;exon_skip	yes
TCF4_LS028	chr18:55351000|55402055:-	TCF4	transcription factor 7 like 2	protein coding gene	yes	ENST00000630268.2	0.054	0.020	0.685	0.011(101)	0.036(25)	0.029(500)	non tumor-specific	alt_3prime	yes
AGTRAP_LS006	chr1:11745837|11745988:+	AGTRAP	angiotensin II receptor associated protein	protein coding gene	no	ENST00000476512.5	0.046	0.027	1.249	0.553(5302)	0.46(323)	0.611(10629)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ABTB1_LS0008	chr3:127677070|127677168:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	.	5.254	3.908	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AL162632.3_UP_LS0002	chr14:45261944|45366145:+	AL162632.3	-	lncRNA gene	no	.	3.065	0.227	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS078	chr4:122325320|122325685:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000419325.5	0.286	0.231	0.716	0.147(1409)	0.151(106)	0.169(2936)	non tumor-specific	intron_retention	yes
UBR5_LS034	chr8:102285338|102285513:-	UBR5	ubiquitin protein ligase E3 component n-recognin 5	protein coding gene	no	ENST00000520539.5;ENST00000220959.8;ENST00000521922.5	35.486	21.088	28.316	0.96(9195)	0.986(692)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ARAF_LS0046	chrX:47570973|47571379:-	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	.	1.644	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MYBBP1A_LS023	chr17:4548649|4549332:-	MYBBP1A	MYB binding protein 1a	protein coding gene	yes	ENST00000381556.6;ENST00000573116.5;ENST00000254718.8;ENST00000573723.1;ENST00000573175.1	49.402	21.671	32.087	0.987(9458)	0.993(697)	0.979(17009)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC105339.1_LS003	chr15:82711432|82711561:-	AC105339.1	-	pseudogene	no	ENST00000440089.1	1.967	0.000	0.800	0.001(5)	0(0)	0.083(1438)	non tumor-specific	nAS	yes
UN_SMCR8_LS0013	chr17:18323033|18323783:+	SMCR8	SMCR8-C9orf72 complex subunit	protein coding gene	no	.	1.181	0.504	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL356094.1_UP_LS0025	chr6:93724114|93736621:+	AL356094.1	-	lncRNA gene	no	.	2.166	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
SLC39A11_LS002	chr17:72647662|72648803:-	SLC39A11	solute carrier family 39 member 11	protein coding gene	no	ENST00000255559.7;ENST00000542342.6;ENST00000579988.1	37.456	21.785	11.441	0.983(9416)	0.973(683)	0.974(16922)	non tumor-specific	alt_3prime;exon_skip	yes
UN_STEAP3_LS0054	chr2:119254848|119256399:+	STEAP3	STEAP3 metalloreductase	protein coding gene	no	.	1.425	0.106	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0357	chr14:105624780|105643225:+	AC246787.2	-	lncRNA gene	no	.	125.846	21.566	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
COPS2_LS017	chr15:49137458|49139528:-	COPS2	COP9 signalosome subunit 2	protein coding gene	yes	ENST00000299259.10;ENST00000299259.10	29.344	21.891	15.197	0.972(9314)	0.991(696)	0.973(16904)	non tumor-specific	alt_3prime;exon_skip	yes
MYO5A_LS013	chr15:52340394|52346361:-	MYO5A	myosin VA	protein coding gene	no	ENST00000356338.10;ENST00000613858.4;ENST00000553916.5;ENST00000399229.6	4.150	4.488	3.918	0.795(7621)	0.84(590)	0.931(16190)	non tumor-specific	exon_skip	yes
UN_PPCS_LS0011	chr1:42457350|42459188:+	PPCS	phosphopantothenoylcysteine synthetase	protein coding gene	no	.	14.395	0.128	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPS6KC1_LS0063	chr1:213212783|213230497:+	RPS6KC1	ribosomal protein S6 kinase C1	protein coding gene	no	.	1.498	0.068	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC012020.2_UP_LS0001	chr3:108034228|108035566:-	AC012020.2	-	lncRNA gene	no	.	1.801	0.087	0.000	0.007(70)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABCD1P4_UP_LS0014	chr22:16163988|16165889:+	ABCD1P4	ATP binding cassette subfamily D member 1 pseudogene 4	pseudogene	no	.	5.909	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MIR1295A_UP_LS0006	chr1:171121863|171129714:-	MIR1295A	microRNA 1295a	small non-coding RNA gene	no	.	4.788	1.265	0.000	0.008(74)	0.041(29)	0(0)	non tumor-specific	nAS	no
UN_ADAT2_LS0052	chr6:143441506|143444928:-	ADAT2	adenosine deaminase tRNA specific 2	protein coding gene	no	.	2.063	0.041	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	nAS	no
SEMA6A_LS004	chr5:116447811|116473073:-	SEMA6A	semaphorin 6A	protein coding gene	no	ENST00000515129.5	0.360	0.275	1.335	0.373(3574)	0.437(307)	0.416(7226)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPR_LS0021	chr2:72888604|72891362:+	SPR	tachykinin receptor 1	protein coding gene	no	.	8.045	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TMPRSS11GP_LS006	chr4:68011143|68014938:-	TMPRSS11GP	transmembrane serine protease 11G, pseudogene	pseudogene	no	ENST00000431070.6	2.732	0.000	0.818	0(1)	0(0)	0.038(665)	non tumor-specific	nAS	yes
FAM205BP_LS003	chr9:34837699|34838350:-	FAM205BP	family with sequence similarity 205 member B, pseudogene	pseudogene	no	ENST00000399773.10;ENST00000455647.2;ENST00000378786.1	0.119	0.002	0.662	0.001(7)	0.001(1)	0.004(69)	non tumor-specific	nAS	yes
CEP78_LS024	chr9:78254964|78262907:+	CEP78	centrosomal protein 78	protein coding gene	no	ENST00000424347.6;ENST00000645398.1;ENST00000643347.1;ENST00000647199.1;ENST00000645865.1;ENST00000642654.1;ENST00000643847.1;ENST00000643499.1;ENST00000643273.1;ENST00000415759.6;ENST00000376597.9;ENST00000277082.9;ENST00000642669.1;ENST00000644208.1;ENST00000646288.1;ENST00000376598.3;ENST00000647130.1;ENST00000487108.6;ENST00000498582.2	10.045	4.577	8.668	0.968(9275)	0.956(671)	0.972(16902)	non tumor-specific	exon_skip	yes
PIK3R5_LS006	chr17:8884783|8886229:-	PIK3R5	phosphoinositide-3-kinase regulatory subunit 5	protein coding gene	no	ENST00000269300.8;ENST00000447110.5;ENST00000623421.3;ENST00000616147.4;ENST00000611902.4;ENST00000581552.5;ENST00000584803.1;ENST00000578515.5;ENST00000577214.1	4.564	2.862	3.841	0.659(6316)	0.687(482)	0.837(14544)	non tumor-specific	alt_3prime	yes
UN_C6orf118_LS0006	chr6:165288932|165289987:-	C6orf118	chromosome 6 open reading frame 118	protein coding gene	no	.	2.241	0.427	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FP236383.1_UP_LS0071	chr21:8214133|8258322:+	FP236383.1	-	lncRNA gene	no	.	325.240	19.392	0.000	0.009(90)	0.007(5)	0(0)	non tumor-specific	nAS	no
STARD5_LS003	chr15:81318502|81319339:-	STARD5	StAR related lipid transfer domain containing 5	protein coding gene	no	ENST00000302824.6;ENST00000560723.5;ENST00000325346.6	11.342	11.910	9.786	0.931(8921)	0.953(669)	0.955(16607)	non tumor-specific	exon_skip	yes
UN_LSM4_LS0046	chr19:18320221|18321734:+	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	.	2.077	0.626	0.000	0.004(36)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_AC011294.1_LS0001	chr7:46674251|46675621:-	AC011294.1	-	lncRNA gene	no	.	1.739	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_KIF26B_LS0037	chr1:245345910|245366834:+	KIF26B	kinesin family member 26B	protein coding gene	no	.	2.068	0.241	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	no
KIF5B_LS016	chr10:32031279|32032706:-	KIF5B	kinesin family member 5B	protein coding gene	no	ENST00000302418.4	119.263	92.862	64.264	0.977(9358)	0.993(697)	0.979(17012)	non tumor-specific	nAS	yes
TTC27_LS019	chr2:32777980|32780054:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000428527.1	0.216	0.144	1.086	0.167(1596)	0.204(143)	0.45(7826)	non tumor-specific	exon_skip	yes
SAP25_LS002	chr7:100572751|100572860:-	SAP25	Sin3A associated protein 25	protein coding gene	no	ENST00000538735.5;ENST00000622764.2;ENST00000614631.4	15.610	1.795	27.815	0.932(8931)	0.863(606)	0.977(16985)	non tumor-specific	intron_retention	yes
UN_AC008735.3_UP_LS0003	chr19:55489086|55578573:-	AC008735.3	-	lncRNA gene	no	.	1.748	0.335	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CENPB_LS0134	chr20:3786023|3786236:+	CENPB	centromere protein B	protein coding gene	no	.	2.790	0.387	0.000	0.009(89)	0.006(4)	0(0)	non tumor-specific	nAS	no
AZGP1P1_LS003	chr7:99986048|99987258:+	AZGP1P1	AZGP1 pseudogene 1	pseudogene	no	ENST00000411909.1	12.566	22.695	1.607	0.391(3748)	0.591(415)	0.278(4830)	non tumor-specific	nAS	yes
UN_IFT43_LS0017	chr14:75941780|75954424:+	IFT43	intraflagellar transport 43	protein coding gene	no	.	2.428	1.290	0.000	0.504(4829)	0.434(305)	0(0)	non tumor-specific	nAS	no
HPS1_LS007	chr10:98423887|98424313:-	HPS1	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1	protein coding gene	no	ENST00000361490.8;ENST00000325103.10;ENST00000613394.4;ENST00000467246.5;ENST00000359632.7;ENST00000478087.5;ENST00000470095.5;ENST00000497527.1	45.240	31.694	60.965	0.995(9535)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TOM1L1_LS026	chr17:54915862|54930073:+	TOM1L1	target of myb1 like 1 membrane trafficking protein	protein coding gene	no	ENST00000570371.5;ENST00000575882.5;ENST00000570965.5;ENST00000445275.6;ENST00000348161.8;ENST00000576932.5;ENST00000572158.5;ENST00000536554.5;ENST00000571319.5;ENST00000575333.5;ENST00000572576.5;ENST00000570977.1;ENST00000570371.5;ENST00000575882.5;ENST00000570965.5;ENST00000445275.6;ENST00000348161.8;ENST00000576932.5;ENST00000572158.5;ENST00000536554.5;ENST00000571319.5;ENST00000575333.5;ENST00000572576.5;ENST00000570977.1	44.687	42.853	20.555	0.96(9199)	0.997(700)	0.947(16459)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
JAML_LS002	chr11:118196821|118197968:-	JAML	junction adhesion molecule like	protein coding gene	no	ENST00000526595.5	0.427	0.356	1.423	0.162(1555)	0.269(189)	0.441(7658)	non tumor-specific	alt_5prime;intron_retention	yes
TXNL4A_LS011	chr18:79977701|80030521:-	TXNL4A	thioredoxin like 4A	protein coding gene	no	ENST00000592957.1	0.086	0.091	0.937	0.209(2006)	0.158(111)	0.369(6417)	non tumor-specific	exon_skip;mutex_exons	yes
SNHG14_LS069	chr15:25171092|25172448:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000553149.1	1.530	0.000	1.898	0(2)	0(0)	0.108(1882)	non tumor-specific	nAS	yes
UN_TMEM8B_LS0007	chr9:35829955|35832600:+	TMEM8B	transmembrane protein 8B	protein coding gene	no	.	0.372	0.640	0.000	0.01(93)	0.021(15)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CYBRD1_LS006	chr2:171522862|171553346:+	CYBRD1	cytochrome b reductase 1	protein coding gene	no	.;.	0.390	0.173	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_USP54_LS0011	chr10:73504272|73505278:+	USP54	ubiquitin specific peptidase 54	protein coding gene	no	.	2.939	0.417	0.000	0.017(167)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AC078923.1_LS0021	chr12:75649293|75650609:+	AC078923.1	-	lncRNA gene	no	.	2.252	2.713	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
NBEAL2_LS010	chr3:46989593|46991840:+	NBEAL2	neurobeachin like 2	protein coding gene	no	.;.	2.353	0.373	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC105052.3_LS0036	chr7:102645479|102666077:-	AC105052.3	-	protein coding gene	no	.	2.305	0.403	0.000	0.03(289)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_ELK3_LS0009	chr12:96235749|96246940:+	ELK3	ETS transcription factor ELK3	protein coding gene	yes	.	1.210	0.250	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ST14_LS0103	chr11:130209997|130210082:-	ST14	ST14 transmembrane serine protease matriptase	protein coding gene	no	.	10.554	0.391	0.000	0.006(56)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GATC_LS0010	chr12:120460902|120461146:+	GATC	glutamyl-tRNA amidotransferase subunit C	protein coding gene	no	.	7.877	1.359	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ME3_LS0065	chr11:86503295|86508792:-	ME3	protocadherin gamma subfamily A, 5	protein coding gene	no	.	1.993	0.744	0.000	0.161(1544)	0.11(77)	0(0)	non tumor-specific	exon_skip	no
CES2_LS015	chr16:66942249|66942648:+	CES2	carboxylesterase 2	protein coding gene	no	ENST00000417689.5;ENST00000317091.8;ENST00000568470.5;ENST00000564420.1;ENST00000567128.1	92.447	166.220	45.669	0.997(9551)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GTF2H3_LS001	chr12:123633872|123639264:+	GTF2H3	general transcription factor IIH subunit 3	protein coding gene	no	ENST00000618160.4;ENST00000542279.5;ENST00000537368.5;ENST00000538845.5;ENST00000543341.6;ENST00000537695.5;ENST00000536375.5	6.808	4.214	8.230	0.896(8585)	0.932(654)	0.959(16678)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EFHD2_LS0012	chr1:15428693|15428742:-	EFHD2	EF-hand domain family member D2	protein coding gene	no	.	0.432	0.223	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_SLC26A7_LS0007	chr8:91243531|91246228:-	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	.	6.256	0.721	0.000	0.005(51)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCCAT333_LS005	chr7:17451061|17466152:+	KCCAT333	-	lncRNA gene	no	ENST00000419463.1;ENST00000635900.1;ENST00000636703.1	13.038	2.519	0.822	0.187(1789)	0.148(104)	0.145(2520)	non tumor-specific	nAS	yes
TERF2_LS017	chr16:69368595|69370483:-	TERF2	telomeric repeat binding factor 2	protein coding gene	no	ENST00000566257.5;ENST00000564982.6;ENST00000569611.6	1.018	0.699	1.649	0.899(8614)	0.925(649)	0.795(13812)	non tumor-specific	alt_3prime;exon_skip	yes
AL163953.1_LS001	chr14:53600183|53613653:-	AL163953.1	-	lncRNA gene	no	ENST00000436530.1	0.469	0.123	0.676	0.073(697)	0.044(31)	0.007(114)	non tumor-specific	nAS	yes
UN_CUEDC1_LS0031	chr17:57867692|57868150:-	CUEDC1	CUE domain containing 1	protein coding gene	no	.	1.052	0.377	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention;mutex_exons	no
RAPGEF6_LS011	chr5:131446703|131450023:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000512052.5	0.777	0.665	1.467	0.332(3184)	0.509(357)	0.591(10269)	non tumor-specific	exon_skip	yes
AC080162.1_LS001	chr2:9505610|9506787:+	AC080162.1	-	lncRNA gene	no	ENST00000480764.5	0.638	0.289	0.694	0.006(58)	0.009(6)	0.127(2207)	non tumor-specific	nAS	yes
UN_HLA-B_LS0542	chr6:31356775|31357094:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	26.625	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KLRD1_LS0004	chr12:10240740|10307978:+	KLRD1	killer cell lectin like receptor D1	protein coding gene	no	.	2.998	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
ATRX_LS058	chrX:77699547|77717131:-	ATRX	ATRX chromatin remodeler	protein coding gene	no	ENST00000624193.1	0.241	0.128	0.620	0.101(964)	0.152(107)	0.072(1243)	non tumor-specific	exon_skip	yes
UN_CHFR_LS0068	chr12:132872394|132875424:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	0.997	0.107	0.000	0.008(80)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_AC009495.3_LS0004	chr2:165795079|165795768:+	AC009495.3	-	lncRNA gene	no	.	1.600	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC073626.1_LS001	chr7:114414784|114419835:-	AC073626.1	-	lncRNA gene	no	ENST00000415146.1	1.054	0.073	0.681	0.009(91)	0.023(16)	0.014(243)	non tumor-specific	nAS	yes
UN_USP8_LS0032	chr15:50495015|50496221:-	USP8	ubiquitin specific peptidase 8	protein coding gene	no	.	1.740	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AL078587.1_LS001	chr20:26009055|26010255:-	AL078587.1	-	lncRNA gene	no	ENST00000448580.1	0.046	0.000	1.241	0.001(6)	0(0)	0(1)	non tumor-specific	nAS	yes
VMP1_LS010	chr17:59731522|59735338:+	VMP1	vacuole membrane protein 1	protein coding gene	no	ENST00000262291.8;ENST00000593168.5;ENST00000585847.5;ENST00000588131.1;ENST00000589823.6;ENST00000592106.5;ENST00000591315.5;ENST00000587259.5	41.716	27.722	32.284	0.989(9480)	0.994(698)	0.979(17017)	non tumor-specific	exon_skip	yes
NOTCH2_LS016	chr1:119938010|119940555:-	NOTCH2	notch receptor 2	protein coding gene	yes	ENST00000256646.6	10.147	9.806	13.873	0.789(7557)	0.933(655)	0.953(16565)	non tumor-specific	nAS	yes
BCKDHB_LS006	chr6:80167811|80168875:+	BCKDHB	branched chain keto acid dehydrogenase E1 subunit beta	protein coding gene	yes	ENST00000369760.8;ENST00000356489.9;ENST00000320393.8	26.619	28.998	17.242	0.976(9350)	0.994(698)	0.971(16872)	non tumor-specific	nAS	yes
UN_S100A5_UP_LS0010	chr1:153548490|153558497:-	S100A5	S100 calcium binding protein A5	protein coding gene	no	.	2.049	0.178	0.000	0.009(89)	0.003(2)	0(0)	non tumor-specific	nAS	no
C11orf49_LS005	chr11:46987310|46991543:+	C11orf49	chromosome 11 open reading frame 49	protein coding gene	no	ENST00000527667.5	0.242	0.127	0.891	0.357(3425)	0.363(255)	0.31(5387)	non tumor-specific	exon_skip;mutex_exons	yes
PCDH15_LS013	chr10:53816277|53817995:-	PCDH15	protocadherin related 15	protein coding gene	no	ENST00000644397.1;ENST00000495484.5;ENST00000642496.1;ENST00000618301.4;ENST00000476074.5	2.685	0.081	3.999	0.07(668)	0.067(47)	0.236(4095)	non tumor-specific	exon_skip	yes
UN_AC004076.1_LS0025	chr19:57456182|57477277:-	AC004076.1	-	protein coding gene	no	.	0.384	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRIM28_LS0233	chr19:58550493|58550572:-	TRIM28	tripartite motif containing 28	protein coding gene	yes	.	6.678	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MBTPS2_LS002	chrX:21843318|21845171:+	MBTPS2	membrane bound transcription factor peptidase, site 2	protein coding gene	no	ENST00000465888.1;ENST00000379484.9;ENST00000365779.2	16.801	9.978	5.259	0.903(8647)	0.97(681)	0.927(16121)	non tumor-specific	nAS	yes
CASC1_LS033	chr12:25161197|25192694:-	CASC1	cilia and flagella associated protein 94	protein coding gene	yes	ENST00000554347.1	0.047	0.000	0.675	0.005(49)	0.007(5)	0.007(123)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AC103855.2_UP_LS0007	chr11:45652606|45665995:-	AC103855.2	-	lncRNA gene	no	.	1.969	0.066	0.000	0.015(143)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_HYAL1_UP_LS0002	chr3:50312743|50318956:-	HYAL1	hyaluronidase 1	protein coding gene	no	.	0.488	0.273	0.000	0.002(18)	0.01(7)	0(0)	non tumor-specific	nAS	no
COX17_LS008	chr3:119675233|119676731:-	COX17	cytochrome c oxidase copper chaperone COX17	protein coding gene	no	ENST00000490145.1	0.040	0.014	0.825	0.784(7516)	0.805(565)	0.285(4953)	non tumor-specific	alt_5prime	yes
AL121760.1_LS001	chr20:1804092|1810554:-	AL121760.1	-	lncRNA gene	no	ENST00000447206.1	0.859	0.293	1.120	0.006(58)	0.007(5)	0.248(4307)	non tumor-specific	nAS	yes
UBR1_LS038	chr15:43047289|43070899:-	UBR1	ubiquitin protein ligase E3 component n-recognin 1	protein coding gene	no	ENST00000563239.1	0.335	0.121	0.566	0.055(526)	0.085(60)	0.008(134)	non tumor-specific	nAS	yes
MYO19_LS021	chr17:36505177|36505297:-	MYO19	myosin XIX	protein coding gene	no	ENST00000610992.4	0.078	0.176	0.642	0.128(1224)	0.085(60)	0.054(930)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF213-AS1_LS0010	chr16:3129653|3132019:-	ZNF213-AS1	ZNF213 antisense RNA 1 (head to head)	lncRNA gene	no	.	3.813	1.193	0.000	0.009(87)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_PMS1_LS0034	chr2:189873656|189877210:+	PMS1	PMS1 homolog 1, mismatch repair system component	protein coding gene	no	.	5.652	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ACSF3_LS0064	chr16:89147149|89154090:+	ACSF3	acyl-CoA synthetase family member 3	protein coding gene	no	.	2.158	0.072	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CAMK2B_LS0032	chr7:44255189|44258872:-	CAMK2B	calcium/calmodulin dependent protein kinase II beta	protein coding gene	no	.	3.145	0.357	0.000	0.013(127)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SPINK5_UP_LS0011	chr5:147963822|148011607:+	SPINK5	serine peptidase inhibitor Kazal type 5	protein coding gene	no	.	2.789	0.124	0.000	0.015(140)	0.001(1)	0(0)	non tumor-specific	nAS	no
C5orf22_LS016	chr5:31545712|31551293:+	C5orf22	chromosome 5 open reading frame 22	protein coding gene	no	ENST00000325366.13;ENST00000510659.5;ENST00000513967.5	10.350	6.688	10.057	0.961(9207)	0.979(687)	0.971(16874)	non tumor-specific	exon_skip	yes
UN_AC092821.3_LS0021	chr12:9560973|9564160:+	AC092821.3	-	lncRNA gene	no	.	1.207	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FAM69B_LS0024	chr9:136714429|136716294:+	FAM69B	divergent protein kinase domain 1B	protein coding gene	no	.	1.758	0.034	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL15A1_LS019	chr9:99025966|99034549:+	COL15A1	collagen type XV alpha 1 chain	protein coding gene	no	ENST00000375001.7;ENST00000610452.1	33.359	26.281	24.655	0.858(8225)	0.899(631)	0.851(14798)	non tumor-specific	nAS	yes
AGBL1-AS1_LS001	chr15:86297074|86299736:-	AGBL1-AS1	AGBL1 antisense RNA 1	lncRNA gene	no	ENST00000564487.1	0.068	0.000	0.731	0(2)	0(0)	0.002(42)	non tumor-specific	nAS	yes
UN_CAMK2G_LS0030	chr10:73848082|73848189:-	CAMK2G	calcium/calmodulin dependent protein kinase II gamma	protein coding gene	no	.	29.670	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DPYSL2_LS0002	chr8:26535189|26539846:-	DPYSL2	dihydropyrimidinase like 2	protein coding gene	no	.	26.491	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
TP53AIP1_LS013	chr11:128937834|128942794:-	TP53AIP1	tumor protein p53 regulated apoptosis inducing protein 1	protein coding gene	no	ENST00000527504.1	0.023	0.025	2.945	0.141(1352)	0.212(149)	0.141(2447)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
POFUT2_LS039	chr21:45285328|45285678:-	POFUT2	protein O-fucosyltransferase 2	protein coding gene	no	ENST00000612472.4	0.136	0.220	1.561	0.334(3202)	0.358(251)	0.695(12084)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
LHFPL3_LS002	chr7:104736911|104845382:+	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	ENST00000401970.2	2.174	0.833	2.321	0.05(481)	0.01(7)	0.131(2273)	non tumor-specific	exon_skip	yes
CABLES2_LS010	chr20:62394265|62396315:-	CABLES2	Cdk5 and Abl enzyme substrate 2	protein coding gene	no	.;.;.	0.291	0.323	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL157714.2_LS0034	chr1:165508171|165526030:-	AL157714.2	-	lncRNA gene	no	.	1.367	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
OSER1_LS014	chr20:44207319|44210084:-	OSER1	oxidative stress responsive serine rich 1	protein coding gene	no	.;.	2.990	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
Z82195.2_LS004	chrX:130495206|130510415:-	Z82195.2	-	pseudogene	no	ENST00000458525.1	0.552	0.000	0.770	0(1)	0(0)	0.001(19)	non tumor-specific	nAS	yes
UN_CRYBA1_UP_LS0003	chr17:28783538|29201567:+	CRYBA1	crystallin beta A1	protein coding gene	no	.	0.779	0.170	0.000	0.006(58)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL445363.1_LS001	chr14:34541989|34542949:-	AL445363.1	-	lncRNA gene	no	ENST00000623749.1	0.291	0.254	0.624	0.004(39)	0.013(9)	0.001(22)	non tumor-specific	nAS	yes
FN1_LS018	chr2:215375393|215375629:-	FN1	fibronectin 1	protein coding gene	no	ENST00000421182.5;ENST00000323926.10;ENST00000336916.8;ENST00000357867.8;ENST00000354785.8;ENST00000359671.5;ENST00000492816.6;ENST00000446046.5;ENST00000443816.5;ENST00000432072.6;ENST00000356005.8;ENST00000456923.5;ENST00000460217.1;ENST00000438981.1	453.663	326.156	166.631	0.987(9458)	0.997(700)	0.977(16979)	non tumor-specific	exon_skip	yes
UN_AC090630.1_UP_LS0014	chr12:42024494|42026437:-	AC090630.1	-	lncRNA gene	no	.	1.996	0.106	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF4_LS0010	chr2:172928346|172960760:+	RAPGEF4	Rap guanine nucleotide exchange factor 4	protein coding gene	no	.	1.377	0.285	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
SNRPA1_LS003	chr15:101285801|101286214:-	SNRPA1	small nuclear ribonucleoprotein polypeptide A'	protein coding gene	no	ENST00000254193.10;ENST00000560496.5;ENST00000559686.3	109.889	34.338	34.518	0.997(9555)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CD99P1_LS0006	chrX:2611038|2615816:+	CD99P1	CD99 molecule pseudogene 1	pseudogene	no	.	2.082	0.416	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MARCKSL1_LS0045	chr1:32334327|32334514:+	MARCKSL1	MARCKS like 1	protein coding gene	no	.	1.590	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00899_UP_LS0002	chr22:46047520|46048179:-	LINC00899	long intergenic non-protein coding RNA 899	lncRNA gene	no	.	2.514	0.278	0.000	0.003(28)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PMM1_UP_LS0001	chr22:41589914|41590295:-	PMM1	phosphomannomutase 1	protein coding gene	no	.	0.877	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC026304.1_UP_LS0005	chr3:143147257|143153078:-	AC026304.1	-	lncRNA gene	no	.	2.094	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GOLGA4_LS0047	chr3:37315589|37319063:+	GOLGA4	golgin A4	protein coding gene	no	.	3.053	0.521	0.000	0.005(45)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
SRRM3_LS010	chr7:76265468|76267258:+	SRRM3	serine/arginine repetitive matrix 3	protein coding gene	no	ENST00000611745.1;ENST00000464752.1	0.393	0.230	12.310	0.16(1533)	0.061(43)	0.253(4389)	non tumor-specific	exon_skip	yes
UN_TPK1_LS0017	chr7:144682978|144709424:-	TPK1	thiamin pyrophosphokinase 1	protein coding gene	no	.	0.912	0.197	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DALRD3_LS025	chr3:49018213|49020846:-	DALRD3	DALR anticodon binding domain containing 3	protein coding gene	no	.;.	0.627	0.089	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AL356124.1_UP_LS0005	chr6:129642018|129767128:-	AL356124.1	-	lncRNA gene	no	.	3.460	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NKAIN4_LS0032	chr20:63248895|63249407:-	NKAIN4	sodium/potassium transporting ATPase interacting 4	protein coding gene	no	.	2.675	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_C11orf96_LS0007	chr11:43943162|43943241:-	C11orf96	chromosome 11 open reading frame 96	protein coding gene	no	.	17.679	6.379	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARL4A_LS008	chr7:12687728|12688169:+	ARL4A	ADP ribosylation factor like GTPase 4A	protein coding gene	no	ENST00000404894.1	9.420	8.397	3.829	0.771(7385)	0.805(565)	0.873(15171)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_COMMD10_LS0029	chr5:116317597|116318211:+	COMMD10	COMM domain containing 10	protein coding gene	no	.	1.832	0.103	0.000	0.016(153)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ZNF844_LS001	chr19:12064876|12074031:+	ZNF844	zinc finger protein 844	protein coding gene	no	ENST00000439326.7;ENST00000441304.2	5.263	5.228	3.636	0.765(7330)	0.925(649)	0.907(15759)	non tumor-specific	exon_skip	yes
UN_AC017037.3_UP_LS0004	chr4:157835365|157929612:-	AC017037.3	-	lncRNA gene	no	.	5.557	0.256	0.000	0.015(144)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CACNA1C_LS0010	chr12:2053611|2110180:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	.	0.525	0.141	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CCNJL_LS0002	chr5:160255708|160259391:-	CCNJL	cyclin J like	protein coding gene	no	.	1.974	0.646	0.000	0.008(74)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SMARCC2_LS0031	chr12:56184244|56184832:-	SMARCC2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2	protein coding gene	no	.	27.946	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_5prime	no
LST1_LS004	chr6:31587106|31587200:+	LST1	leukocyte specific transcript 1	protein coding gene	no	ENST00000419073.1	0.312	0.161	0.894	0.205(1963)	0.182(128)	0.268(4653)	non tumor-specific	intron_retention	yes
UN_MTA3_LS0039	chr2:42679814|42682401:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	.	2.120	0.026	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ANO6_LS027	chr12:45409487|45416699:+	ANO6	anoctamin 6	protein coding gene	no	ENST00000426898.2;ENST00000425752.6;ENST00000423947.7;ENST00000320560.12;ENST00000441606.2	38.684	32.409	16.005	0.94(9002)	0.983(690)	0.96(16684)	non tumor-specific	exon_skip	yes
UN_PCGF2_LS0049	chr17:38737107|38738353:-	PCGF2	polycomb group ring finger 2	protein coding gene	yes	.	3.208	0.066	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_APH1B_LS0008	chr15:63302472|63302724:+	APH1B	aph-1 homolog B, gamma-secretase subunit	protein coding gene	no	.	4.905	0.135	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AC090227.1_LS0005	chr18:49799804|49802728:+	AC090227.1	-	protein coding gene	no	.	2.736	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-242P_UP_LS0005	chr2:43098040|43128738:-	RNU6-242P	RNA, U6 small nuclear 242, pseudogene	small non-coding RNA gene	no	.	1.706	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
ATRN_LS007	chr20:3559483|3560662:+	ATRN	attractin	protein coding gene	no	ENST00000262919.9;ENST00000446916.2	31.140	27.745	9.865	0.939(8994)	0.979(687)	0.962(16716)	non tumor-specific	nAS	yes
AC104984.4_LS001	chr17:30238800|30252074:+	AC104984.4	-	lncRNA gene	no	ENST00000577420.1	0.241	0.216	0.708	0.032(306)	0.182(128)	0.011(185)	non tumor-specific	nAS	yes
SOX2-OT_LS058	chr3:181715292|181736375:+	SOX2-OT	SOX2 overlapping transcript	lncRNA gene	no	ENST00000600801.6	0.078	0.025	1.318	0.071(676)	0.007(5)	0.07(1215)	non tumor-specific	nAS	yes
HDAC4_LS003	chr2:239054833|239066722:-	HDAC4	histone deacetylase 4	protein coding gene	no	ENST00000345617.7;ENST00000543185.5;ENST00000430200.1	9.046	6.457	9.335	0.925(8860)	0.917(644)	0.973(16908)	non tumor-specific	nAS	yes
HCCS_LS005	chrX:11114986|11117267:+	HCCS	holocytochrome c synthase	protein coding gene	no	ENST00000321143.8;ENST00000380763.7;ENST00000380762.4	54.327	33.375	29.157	0.995(9534)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
MKS1_LS022	chr17:58214387|58216088:-	MKS1	MKS transition zone complex subunit 1	protein coding gene	no	ENST00000393120.6	0.164	0.140	1.094	0.46(4407)	0.504(354)	0.54(9390)	non tumor-specific	exon_skip	yes
UN_AC006453.1_UP_LS0237	chr2:90115233|90154408:-	AC006453.1	-	pseudogene	no	.	14.786	1.888	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FAM157A_LS0075	chr3:198219980|198220127:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	2.236	0.208	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
OSBPL9_LS022	chr1:51749588|51750145:+	OSBPL9	oxysterol binding protein like 9	protein coding gene	no	ENST00000533884.5;ENST00000481937.5;ENST00000526917.5	0.028	0.024	1.074	0.445(4265)	0.613(430)	0.558(9704)	non tumor-specific	exon_skip	yes
HPS4_LS022	chr22:26466262|26470719:-	HPS4	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2	protein coding gene	no	.;.	3.950	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF619P1_UP_LS0002	chr7:45991077|46036618:+	ZNF619P1	zinc finger protein 619 pseudogene 1	pseudogene	no	.	3.062	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
FREM1_LS019	chr9:14770806|14775789:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	ENST00000422223.6;ENST00000380894.5;ENST00000380880.3;ENST00000486223.1	4.448	5.097	3.150	0.217(2075)	0.546(383)	0.762(13242)	non tumor-specific	alt_3prime	yes
DNAH12_LS009	chr3:57309854|57310717:-	DNAH12	dynein axonemal heavy chain 12	protein coding gene	no	ENST00000495027.5;ENST00000351747.6;ENST00000466540.2	3.733	2.319	1.036	0.056(533)	0.103(72)	0.264(4585)	non tumor-specific	nAS	yes
UN_LINC01256_UP_LS0020	chr4:132313358|132327879:+	LINC01256	long intergenic non-protein coding RNA 1256	lncRNA gene	no	.	5.563	0.288	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC137630.2_LS001	chr3:48980346|48983727:-	AC137630.2	-	lncRNA gene	no	ENST00000429681.1	0.182	0.113	0.783	0.32(3065)	0.356(250)	0.069(1196)	non tumor-specific	nAS	yes
RTF2_LS011	chr20:56474771|56476985:+	RTF2	replication termination factor 2	protein coding gene	no	ENST00000023939.8;ENST00000357348.9;ENST00000395881.7;ENST00000449062.1;ENST00000466260.1	220.086	142.763	111.153	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_AP002001.1_UP_LS0006	chr11:106177330|106185205:+	AP002001.1	-	pseudogene	no	.	1.601	0.187	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
BORCS8_LS003	chr19:19177515|19178847:-	BORCS8	BLOC-1 related complex subunit 8	protein coding gene	no	ENST00000488252.6	0.005	0.015	0.802	0.243(2326)	0.191(134)	0.322(5599)	non tumor-specific	intron_retention	yes
UN_FREM1_LS0047	chr9:14869244|14910155:-	FREM1	FRAS1 related extracellular matrix 1	protein coding gene	no	.	0.947	0.149	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_ZFYVE16_LS0013	chr5:80440032|80443203:+	ZFYVE16	zinc finger FYVE-type containing 16	protein coding gene	no	.	1.364	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
EME1_LS009	chr17:50376193|50378774:+	EME1	essential meiotic structure-specific endonuclease 1	protein coding gene	no	ENST00000510246.1	0.154	0.091	0.744	0.486(4653)	0.061(43)	0.107(1867)	non tumor-specific	exon_skip	yes
TMEM161B_LS032	chr5:88240916|88268788:-	TMEM161B	transmembrane protein 161B	protein coding gene	no	ENST00000503194.1	0.053	0.095	0.847	0.081(778)	0.118(83)	0.444(7713)	non tumor-specific	alt_5prime;exon_skip	yes
CYP2W1_LS003	chr7:984574|984950:+	CYP2W1	cytochrome P450 family 2 subfamily W member 1	protein coding gene	no	ENST00000308919.11;ENST00000340150.10	8.435	1.166	2.796	0.207(1980)	0.155(109)	0.24(4167)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GOLGA2P5_LS021	chr12:100168633|100168924:-	GOLGA2P5	GOLGA2 pseudogene 5	pseudogene	no	ENST00000421840.2	1.800	1.302	2.740	0.437(4183)	0.541(380)	0.821(14272)	non tumor-specific	nAS	yes
UN_GALNT5_LS0019	chr2:157309633|157311208:+	GALNT5	polypeptide N-acetylgalactosaminyltransferase 5	protein coding gene	no	.	0.375	0.047	0.000	0.01(99)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
TMEM52B_LS009	chr12:10185368|10186420:+	TMEM52B	transmembrane protein 52B	protein coding gene	no	ENST00000381923.6;ENST00000298530.7;ENST00000543484.1	6.310	35.471	0.914	0.11(1058)	0.224(157)	0.06(1037)	non tumor-specific	exon_skip	yes
LAT2_LS015	chr7:74220734|74221637:+	LAT2	solute carrier family 7 member 8	protein coding gene	yes	ENST00000344995.9;ENST00000460943.5;ENST00000398475.5;ENST00000275635.11;ENST00000490586.1	30.335	11.092	5.589	0.925(8864)	0.972(682)	0.946(16440)	non tumor-specific	exon_skip	yes
UN_PLBD2_LS0168	chr12:113390213|113390306:-	PLBD2	phospholipase B domain containing 2	protein coding gene	no	.	2.891	0.114	0.000	0.008(80)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LIMS2_LS0077	chr2:127657562|127657952:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	1.447	0.625	0.000	0.028(268)	0.057(40)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CEP128_LS030	chr14:80916562|80958178:-	CEP128	centrosomal protein 128	protein coding gene	no	ENST00000556042.5	0.206	0.070	0.689	0.055(531)	0.04(28)	0.03(519)	non tumor-specific	exon_skip	yes
UN_AC068831.1_LS0001	chr15:90953578|90954335:-	AC068831.1	-	lncRNA gene	no	.	0.882	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AGRN_UP_LS0004	chr1:1000953|1008194:+	AGRN	agrin	protein coding gene	yes	.	2.260	0.093	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNBD2_LS015	chr20:36011257|36023614:+	CNBD2	cyclic nucleotide binding domain containing 2	protein coding gene	no	ENST00000349339.5	1.561	0.000	0.697	0(2)	0(0)	0.007(126)	non tumor-specific	alt_3prime;exon_skip	yes
NAA80_LS003	chr3:50297672|50297807:-	NAA80	N-alpha-acetyltransferase 80, NatH catalytic subunit	protein coding gene	no	ENST00000452674.1	0.049	0.023	0.838	0.199(1905)	0.192(135)	0.414(7190)	non tumor-specific	intron_retention	yes
UN_SLC17A5_UP_LS0014	chr6:73660758|73660809:-	SLC17A5	solute carrier family 17 member 5	protein coding gene	no	.	2.857	0.618	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EXTL3_LS0045	chr8:28737663|28743122:+	EXTL3	exostosin like glycosyltransferase 3	protein coding gene	yes	.	3.718	0.775	0.000	0.01(98)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAH3_LS066	chr16:21150534|21150751:-	DNAH3	dynein axonemal heavy chain 3	protein coding gene	no	ENST00000396036.5;ENST00000575491.1	0.808	0.791	1.164	0.04(385)	0.077(54)	0.029(505)	non tumor-specific	nAS	yes
UN_FBXO42_LS0023	chr1:16305919|16310236:-	FBXO42	F-box protein 42	protein coding gene	no	.	2.520	0.124	0.000	0.009(82)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
IQGAP2_LS032	chr5:76658667|76660028:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000514579.1	0.377	0.203	0.849	0.176(1690)	0.204(143)	0.158(2739)	non tumor-specific	nAS	yes
UN_ANK3_LS0045	chr10:60263149|60263835:-	ANK3	ankyrin 3	protein coding gene	no	.	2.192	0.738	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UBXN2B_LS002	chr8:58411469|58416850:+	UBXN2B	UBX domain protein 2B	protein coding gene	no	ENST00000399598.6;ENST00000520732.5;ENST00000523409.5;ENST00000638450.1	4.484	3.066	4.653	0.96(9200)	0.986(692)	0.953(16564)	non tumor-specific	exon_skip	yes
CDK5RAP2_LS049	chr9:120528904|120529978:-	CDK5RAP2	CDK5 regulatory subunit associated protein 2	protein coding gene	no	ENST00000481266.1	0.047	0.008	0.547	0.004(35)	0.004(3)	0.003(59)	non tumor-specific	nAS	yes
UN_MGAT4A_LS0003	chr2:98622922|98624363:+	MGAT4A	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A	protein coding gene	no	.	1.441	0.361	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
SLCO6A1_LS010	chr5:102420021|102438617:-	SLCO6A1	solute carrier organic anion transporter family member 6A1	protein coding gene	no	ENST00000506729.5;ENST00000379807.7;ENST00000389019.7;ENST00000514551.5	1.125	0.000	0.680	0.002(19)	0(0)	0.006(100)	non tumor-specific	exon_skip	yes
UN_SYN1_LS0083	chrX:47607198|47613957:-	SYN1	synapsin I	protein coding gene	no	.	1.685	0.193	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SGMS2_LS0009	chr4:107825809|107828229:+	SGMS2	sphingomyelin synthase 2	protein coding gene	no	.	0.999	0.666	0.000	0.007(63)	0.044(31)	0(0)	non tumor-specific	exon_skip	no
UN_GK5_LS0047	chr3:142215688|142225309:-	GK5	glycerol kinase 5	protein coding gene	no	.	0.912	0.051	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LARP1_LS013	chr5:154793723|154793800:+	LARP1	La ribonucleoprotein 1, translational regulator	protein coding gene	no	ENST00000336314.8;ENST00000518297.5;ENST00000521577.1;ENST00000519931.5;ENST00000524248.5;ENST00000518194.1	21.255	14.029	30.835	0.959(9187)	0.98(688)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
ADCY10P1_LS012	chr6:41118184|41118954:+	ADCY10P1	ADCY10 pseudogene 1	pseudogene	no	ENST00000457653.8	3.372	0.438	1.848	0.017(165)	0.021(15)	0.764(13277)	non tumor-specific	nAS	yes
UN_HEATR3_LS0017	chr16:50076089|50078741:+	HEATR3	HEAT repeat containing 3	protein coding gene	no	.	1.856	0.281	0.000	0.006(56)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ABCC8_LS002	chr11:17393212|17393697:-	ABCC8	ATP binding cassette subfamily C member 8	protein coding gene	no	ENST00000525022.1	0.156	0.069	0.898	0.094(903)	0.083(58)	0.025(429)	non tumor-specific	alt_3prime	yes
NPHP3-ACAD11_LS005	chr3:132577015|132578796:-	NPHP3-ACAD11	NPHP3-ACAD11 readthrough (NMD candidate)	protein coding gene	no	ENST00000471702.2	20.925	24.524	52.212	0.972(9313)	0.99(695)	0.978(17001)	non tumor-specific	nAS	yes
BLM_LS026	chr15:90808941|90809137:+	BLM	BLM RecQ like helicase	protein coding gene	yes	ENST00000560821.1	0.037	0.121	0.891	0.272(2608)	0.148(104)	0.106(1847)	non tumor-specific	nAS	yes
PI4KA_LS060	chr22:20803320|20804300:-	PI4KA	phosphatidylinositol 4-kinase alpha	protein coding gene	no	ENST00000255882.10;ENST00000485963.5	39.070	37.088	26.812	0.931(8921)	0.986(692)	0.979(17010)	non tumor-specific	nAS	yes
AP001442.1_LS005	chr21:25935048|25941308:+	AP001442.1	-	lncRNA gene	no	ENST00000600590.1	2.129	0.000	0.830	0(3)	0(0)	0(1)	non tumor-specific	nAS	yes
DOCK7_LS049	chr1:62555989|62558989:-	DOCK7	dedicator of cytokinesis 7	protein coding gene	no	ENST00000251157.10;ENST00000454575.6;ENST00000340370.10;ENST00000634264.1;ENST00000635123.1;ENST00000635253.1;ENST00000637208.1;ENST00000634929.1;ENST00000634652.1	3.127	1.857	6.444	0.833(7985)	0.93(653)	0.916(15930)	non tumor-specific	nAS	yes
AC098798.1_LS002	chr4:110513539|110515695:-	AC098798.1	-	lncRNA gene	no	ENST00000503998.1	2.323	0.000	0.687	0.002(18)	0(0)	0.015(267)	non tumor-specific	nAS	yes
C1orf198_LS007	chr1:230868402|230868812:-	C1orf198	chromosome 1 open reading frame 198	protein coding gene	no	ENST00000470540.5	0.611	0.424	1.050	0.066(632)	0.104(73)	0.409(7105)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF546_LS006	chr19:39997915|40006096:+	ZNF546	zinc finger protein 546	protein coding gene	no	ENST00000599504.5;ENST00000601138.5	0.547	0.536	0.850	0.285(2733)	0.494(347)	0.417(7250)	non tumor-specific	exon_skip	yes
UN_DPY30_LS0024	chr2:31943383|32010994:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	.	1.433	0.204	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	nAS	no
SLC5A6_LS023	chr2:27206942|27207258:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	ENST00000310574.7;ENST00000488743.6;ENST00000408041.5;ENST00000445802.5;ENST00000412471.5;ENST00000401463.5;ENST00000432106.5	19.384	8.472	27.088	0.97(9290)	0.986(692)	0.978(16991)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MT-TQ_UP_LS0427	chrM:4931|6220:-	MT-TQ	mitochondrially encoded tRNA-Gln (CAA/G)	small non-coding RNA gene	no	.	65.727	11.720	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
RREB1_LS012	chr6:7181246|7187434:+	RREB1	ras responsive element binding protein 1	protein coding gene	no	.;.	2.308	0.327	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SSX1_LS0003	chrX:48255432|48256933:+	SSX1	SSX family member 1	protein coding gene	yes	.	3.831	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DEUP1_LS0024	chr11:93397350|93408231:+	DEUP1	deuterosome assembly protein 1	protein coding gene	no	.	2.773	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004980.1_LS0019	chr7:76551522|76621116:+	AC004980.1	-	pseudogene	no	.	2.713	0.748	0.000	0.035(332)	0.033(23)	0(0)	non tumor-specific	nAS	no
UN_CRELD1_LS0035	chr3:9943515|9943890:+	CRELD1	cysteine rich with EGF like domains 1	protein coding gene	no	.	4.243	0.994	0.000	0.013(120)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MTMR1_LS014	chrX:150712970|150714479:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000436701.5	0.533	0.312	0.873	0.016(149)	0.011(8)	0.071(1242)	non tumor-specific	exon_skip;mutex_exons	yes
AKT2_LS073	chr19:40282444|40282708:-	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	ENST00000423127.5;ENST00000581582.1	0.482	0.190	1.208	0.361(3456)	0.356(250)	0.571(9922)	non tumor-specific	exon_skip;intron_retention	yes
LIG3_LS022	chr17:34997825|34998219:+	LIG3	DNA ligase 3	protein coding gene	no	ENST00000378526.8;ENST00000262327.9;ENST00000586058.1;ENST00000586119.1;ENST00000378526.8;ENST00000262327.9;ENST00000586058.1;ENST00000586119.1	17.122	9.587	16.502	0.988(9467)	0.994(698)	0.978(17000)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ING4_LS0003	chr12:6650906|6650991:+	ING4	inhibitor of growth family member 4	protein coding gene	yes	.	3.484	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RF00017_UP_LS0147	chr17:49122462|49123778:-	RF00017	-	small non-coding RNA gene	no	.	11.788	0.817	0.000	0.012(117)	0.027(19)	0(0)	non tumor-specific	nAS	no
CSE1L_LS021	chr20:49090839|49090937:+	CSE1L	chromosome segregation 1 like	protein coding gene	no	ENST00000396192.7;ENST00000262982.2;ENST00000469700.1	210.876	76.151	61.526	0.996(9542)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
UN_KLHDC4_LS0052	chr16:87711443|87714492:-	KLHDC4	kelch domain containing 4	protein coding gene	no	.	1.378	0.183	0.000	0.013(121)	0.011(8)	0(0)	non tumor-specific	alt_5prime	no
UN_AC092164.1_UP_LS0005	chr2:28747982|28748820:-	AC092164.1	-	lncRNA gene	no	.	2.753	0.781	0.000	0.108(1035)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_RECQL5_LS0029	chr17:75633345|75651186:-	RECQL5	RecQ like helicase 5	protein coding gene	no	.	1.242	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPHK2_LS0024	chr19:48628961|48628988:-	SPHK2	sphingosine kinase 2	protein coding gene	no	.	2.020	0.102	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TRIM35_LS0008	chr8:27298559|27304761:-	TRIM35	tripartite motif containing 35	protein coding gene	yes	.	0.808	0.373	0.000	0.034(330)	0.054(38)	0(0)	non tumor-specific	exon_skip	no
UN_OPTC_LS0008	chr1:203505219|203505333:-	OPTC	opticin	protein coding gene	no	.	1.980	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UGGT1_LS0039	chr2:128185447|128193537:+	UGGT1	UDP-glucose glycoprotein glucosyltransferase 1	protein coding gene	no	.	2.962	1.654	0.000	0.253(2420)	0.256(180)	0(0)	non tumor-specific	nAS	no
UN_IGDCC4_LS0012	chr15:65411370|65421946:-	IGDCC4	immunoglobulin superfamily DCC subclass member 4	protein coding gene	no	.	0.961	0.299	0.000	0.021(197)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_FAM90A1_LS0004	chr12:8226028|8226309:+	FAM90A1	family with sequence similarity 90 member A1	protein coding gene	no	.	2.462	0.061	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNLS_LS003	chr10:88314641|88362552:-	RNLS	renalase, FAD dependent amine oxidase	protein coding gene	no	ENST00000371947.7;ENST00000331772.8;ENST00000466945.5	14.950	15.237	8.557	0.91(8718)	0.987(693)	0.967(16810)	non tumor-specific	exon_skip	yes
UN_IGLV1-40_UP_LS0006	chr22:22381102|22404477:+	IGLV1-40	immunoglobulin lambda variable 1-40	no	no	.	73.473	5.593	0.000	0.012(112)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_AC241952.1_LS0036	chr1:120519821|120520564:-	AC241952.1	-	pseudogene	no	.	0.864	0.181	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
TDRD10_LS013	chr1:154540232|154542024:+	TDRD10	tudor domain containing 10	protein coding gene	no	.;.	0.810	1.420	0.000	0.002(18)	0.021(15)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ASH2L_LS0034	chr8:38140237|38140856:+	ASH2L	ASH2 like, histone lysine methyltransferase complex subunit	protein coding gene	no	.	6.428	3.292	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
RRBP1_LS058	chr20:17659058|17659118:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.	8.089	8.206	0.000	0.017(159)	0.033(23)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PPA1_LS006	chr10:70209685|70213463:-	PPA1	inorganic pyrophosphatase 1	protein coding gene	no	ENST00000373232.7	405.535	226.581	214.486	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
HNRNPDL_LS014	chr4:82426129|82427190:-	HNRNPDL	heterogeneous nuclear ribonucleoprotein D like	protein coding gene	no	ENST00000614627.4;ENST00000614627.4	0.433	0.496	10.370	0.722(6916)	0.724(508)	0.972(16900)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CREBBP_LS0094	chr16:3850698|3850753:+	CREBBP	CREB binding protein	protein coding gene	yes	.	2.350	0.432	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
MBNL2_LS008	chr13:97347067|97357482:+	MBNL2	muscleblind like splicing regulator 2	protein coding gene	no	ENST00000397601.5;ENST00000376673.7;ENST00000343600.8;ENST00000345429.10	24.946	31.185	21.440	0.936(8970)	0.986(692)	0.971(16882)	non tumor-specific	exon_skip	yes
TMEM109_LS004	chr11:60922641|60922744:+	TMEM109	transmembrane protein 109	protein coding gene	no	ENST00000540280.1	3.949	3.955	4.166	0.839(8034)	0.849(596)	0.924(16069)	non tumor-specific	intron_retention	yes
MED28_LS007	chr4:17625845|17628006:+	MED28	mediator complex subunit 28	protein coding gene	no	ENST00000503945.2	1.002	0.620	1.442	0.527(5045)	0.497(349)	0.727(12630)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
TMEM86A_LS001	chr11:18693377|18700933:+	TMEM86A	transmembrane protein 86A	protein coding gene	no	ENST00000527002.5	0.103	0.014	0.635	0.068(655)	0.06(42)	0.012(214)	non tumor-specific	nAS	yes
UN_PPP1R10_LS0025	chr6:30602292|30602383:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	.	6.738	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	intron_retention	no
SPACA1_LS006	chr6:88059588|88064099:+	SPACA1	sperm acrosome associated 1	protein coding gene	no	ENST00000237201.1	3.794	0.000	0.720	0.002(23)	0(0)	0.028(485)	non tumor-specific	alt_3prime	yes
CFH_LS022	chr1:196737660|196740619:+	CFH	complement factor H	protein coding gene	no	ENST00000367429.8;ENST00000466229.5;ENST00000470918.1	107.777	136.520	61.296	0.976(9347)	0.996(699)	0.96(16685)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PYGO2_LS0008	chr1:154957274|154957351:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	2.841	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
CNTNAP1_LS007	chr17:42687046|42687720:+	CNTNAP1	contactin associated protein 1	protein coding gene	no	ENST00000264638.8;ENST00000591662.1	3.242	6.854	5.130	0.61(5843)	0.634(445)	0.89(15466)	non tumor-specific	intron_retention	yes
UBE4B_LS032	chr1:10158482|10161142:+	UBE4B	ubiquitination factor E4B	protein coding gene	yes	ENST00000253251.12;ENST00000343090.10;ENST00000488228.1	53.233	38.203	35.901	0.99(9487)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip	yes
CSF2RA_LS016	chrX:1288888|1290337:+	CSF2RA	colony stimulating factor 2 receptor subunit alpha	protein coding gene	no	ENST00000381529.8;ENST00000501036.7;ENST00000417535.7;ENST00000381524.8;ENST00000493312.6;ENST00000412290.6;ENST00000432318.8;ENST00000381509.8;ENST00000355805.7;ENST00000486791.6;ENST00000355432.8;ENST00000381500.6	10.992	5.132	4.116	0.842(8069)	0.89(625)	0.852(14801)	non tumor-specific	alt_3prime	yes
CPO_LS008	chr2:206968347|206969174:+	CPO	coproporphyrinogen oxidase	protein coding gene	no	ENST00000272852.3	2.996	25.341	2.309	0.081(774)	0.152(107)	0.761(13233)	non tumor-specific	nAS	yes
UN_MADD_LS0044	chr11:47315327|47321811:+	MADD	MAP kinase activating death domain	protein coding gene	yes	.	1.392	0.148	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ARFGAP1_LS0007	chr20:63277994|63278117:+	ARFGAP1	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	.	1.552	0.113	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ECEL1_LS003	chr2:232480813|232481091:-	ECEL1	endothelin converting enzyme like 1	protein coding gene	no	ENST00000482346.1;ENST00000304546.5;ENST00000409941.1	10.575	2.626	2.430	0.372(3562)	0.289(203)	0.653(11353)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ESRP2_LS0011	chr16:68230480|68230841:-	ESRP2	epithelial splicing regulatory protein 2	protein coding gene	no	.	6.107	0.697	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TXN2_LS0066	chr22:36480824|36481555:+	TXN2	thioredoxin 2	protein coding gene	no	.	0.615	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ABCB8_LS036	chr7:151036170|151036544:+	ABCB8	ATP binding cassette subfamily B member 8	protein coding gene	no	ENST00000542328.5;ENST00000358849.8;ENST00000482309.5;ENST00000470645.5;ENST00000297504.10;ENST00000466514.5;ENST00000498578.5;ENST00000477719.5;ENST00000477092.5;ENST00000491920.1	51.396	26.586	24.265	0.994(9519)	0.997(700)	0.979(17017)	non tumor-specific	nAS	yes
UN_GNAI2_LS0090	chr3:50258162|50258219:-	GNAI2	G protein subunit alpha i2	protein coding gene	yes	.	1.673	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BRD3OS_LS0007	chr9:134026090|134026211:+	BRD3OS	BRD3 opposite strand	protein coding gene	no	.	1.823	0.097	0.000	0.021(200)	0.027(19)	0(0)	non tumor-specific	nAS	no
ZNF792_LS001	chr19:34959571|34960235:-	ZNF792	zinc finger protein 792	protein coding gene	no	ENST00000404801.1;ENST00000605484.1	3.938	2.118	1.969	0.791(7576)	0.866(608)	0.798(13865)	non tumor-specific	exon_skip;intron_retention	yes
UN_GNA15_LS0012	chr19:3157881|3162576:+	GNA15	G protein subunit alpha 15	protein coding gene	no	.	33.044	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_POM121_LS0095	chr7:72948597|72948664:-	POM121	POM121 and ZP3 fusion	protein coding gene	no	.	3.506	0.885	0.000	0.121(1158)	0.067(47)	0(0)	non tumor-specific	nAS	no
UN_ASPM_LS0016	chr1:197097503|197100431:-	ASPM	assembly factor for spindle microtubules	protein coding gene	no	.	1.511	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CHD3_LS0079	chr17:7909338|7909505:+	CHD3	chromodomain helicase DNA binding protein 3	protein coding gene	no	.	4.766	0.762	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
CCT7_LS022	chr2:73243129|73243997:+	CCT7	chaperonin containing TCP1 subunit 7	protein coding gene	no	ENST00000469844.5;ENST00000540468.5;ENST00000539919.5;ENST00000258091.9;ENST00000461290.5;ENST00000399032.2;ENST00000409924.7;ENST00000473786.5	282.388	140.474	206.019	0.999(9568)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
KCNJ18_LS001	chr17:21692714|21695983:+	KCNJ18	potassium inwardly rectifying channel subfamily J member 18	protein coding gene	no	ENST00000567955.3	0.113	0.002	0.841	0.001(11)	0.001(1)	0.003(60)	non tumor-specific	nAS	yes
UN_PLAGL2_LS0055	chr20:32196531|32196725:+	PLAGL2	PLAG1 like zinc finger 2	protein coding gene	yes	.	1.799	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4A2_LS011	chr3:186785101|186785883:+	EIF4A2	eukaryotic translation initiation factor 4A2	protein coding gene	no	ENST00000323963.9;ENST00000425053.5;ENST00000440191.6;ENST00000498746.1;ENST00000466362.1	210.188	192.026	436.423	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_RF00212_UP_LS0010	chr13:89817325|89818953:+	RF00212	-	small non-coding RNA gene	no	.	1.218	0.059	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01510_LS0003	chr7:116571230|116663739:-	LINC01510	cytosolic oncogenic antisense to MET transcript	lncRNA gene	no	.	4.342	0.778	0.000	0.007(71)	0.001(1)	0(0)	non tumor-specific	nAS	no
FBN3_LS046	chr19:8117291|8117464:-	FBN3	fibrillin 3	protein coding gene	no	ENST00000600128.5;ENST00000270509.6;ENST00000601739.5	9.244	0.949	1.259	0.14(1346)	0.199(140)	0.186(3241)	non tumor-specific	alt_5prime;exon_skip	yes
UN_S100P_LS0007	chr4:6694034|6696932:+	S100P	S100 calcium binding protein P	protein coding gene	no	.	257.714	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0423	chr14:105625857|105669607:+	AC246787.2	-	lncRNA gene	no	.	19.069	4.071	0.000	0.007(69)	0.007(5)	0(0)	non tumor-specific	nAS	no
GORAB_LS004	chr1:170532284|170536310:+	GORAB	golgin, RAB6 interacting	protein coding gene	yes	.;.	1.116	0.377	0.000	0.021(199)	0.023(16)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CBWD4P_LS007	chr9:65318560|65321193:-	CBWD4P	COBW domain containing 4, pseudogene	pseudogene	no	ENST00000445695.1	10.430	6.285	0.911	0.987(9459)	0.983(690)	0.418(7263)	non tumor-specific	nAS	yes
UN_BGN_LS0215	chrX:153508899|153508985:-	BGN	biglycan	protein coding gene	no	.	21.003	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRLS1_LS0021	chr20:6006834|6009775:+	CRLS1	cardiolipin synthase 1	protein coding gene	no	.	2.584	1.592	0.000	0.441(4221)	0.439(308)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
FHL1_LS014	chrX:136168267|136169907:+	FHL1	hemophagocytic lymphohistiocytosis 1	protein coding gene	yes	ENST00000434885.5	0.005	0.130	0.585	0.018(169)	0.041(29)	0.001(23)	non tumor-specific	alt_5prime	yes
TTC25_LS001	chr17:41930837|41935217:+	TTC25	tetratricopeptide repeat domain 25	protein coding gene	no	ENST00000593239.5;ENST00000591658.5;ENST00000377540.5	2.139	1.333	1.647	0.497(4759)	0.641(450)	0.691(12018)	non tumor-specific	nAS	yes
NPM2_LS023	chr8:22034544|22036358:+	NPM2	nucleophosmin/nucleoplasmin 2	protein coding gene	no	ENST00000519373.1	0.018	0.031	1.140	0.328(3141)	0.281(197)	0.177(3077)	non tumor-specific	alt_3prime;exon_skip	yes
CAPN2_LS007	chr1:223749122|223750890:+	CAPN2	calpain 2	protein coding gene	no	ENST00000433674.6;ENST00000295006.5	185.746	162.398	129.049	0.992(9505)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_NSD2_LS0038	chr4:1955851|1955983:+	NSD2	nuclear receptor binding SET domain protein 2	protein coding gene	no	.	2.653	1.727	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
SEPT7_LS022	chr7:35879940|35882484:+	SEPT7	septin 7	protein coding gene	no	ENST00000399034.7;ENST00000350320.10;ENST00000435235.6;ENST00000635175.1;ENST00000399035.7;ENST00000425198.1;ENST00000634591.1;ENST00000432293.2	212.904	134.471	180.977	0.992(9503)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_POU2F3_LS0038	chr11:120315427|120317260:+	POU2F3	POU class 2 homeobox 3	protein coding gene	yes	.	4.084	0.000	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAE1_LS017	chr16:66816672|66816965:-	NAE1	NEDD8 activating enzyme E1 subunit 1	protein coding gene	no	ENST00000359087.8;ENST00000290810.7;ENST00000379463.6;ENST00000394074.6;ENST00000563253.5	113.315	54.789	47.894	0.991(9499)	0.997(700)	0.978(17004)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
VPS13B_LS019	chr8:99193057|99240870:+	VPS13B	vacuolar protein sorting 13 homolog B	protein coding gene	no	ENST00000521932.1	0.225	0.098	0.716	0.256(2449)	0.219(154)	0.143(2490)	non tumor-specific	nAS	yes
UN_MDGA2_LS0002	chr14:46841248|46841490:-	MDGA2	MAM domain containing glycosylphosphatidylinositol anchor 2	protein coding gene	no	.	2.835	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
HEMK1_LS026	chr3:50580229|50580381:+	HEMK1	HemK methyltransferase family member 1	protein coding gene	no	ENST00000434410.5;ENST00000232854.8;ENST00000448997.5;ENST00000455834.5;ENST00000443894.1	11.830	7.851	26.541	0.974(9334)	0.973(683)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
PIGN_LS042	chr18:62138298|62138983:-	PIGN	phosphatidylinositol glycan anchor biosynthesis class N	protein coding gene	no	ENST00000639600.1;ENST00000640252.1;ENST00000639912.1;ENST00000640876.1;ENST00000357637.10;ENST00000640145.1;ENST00000638977.1;ENST00000640170.1;ENST00000638167.1;ENST00000640540.1;ENST00000639342.1;ENST00000638435.1;ENST00000639681.1;ENST00000400334.7;ENST00000639902.1;ENST00000639758.1;ENST00000638936.1;ENST00000638858.1;ENST00000638369.1;ENST00000640593.1;ENST00000640268.1;ENST00000638904.1;ENST00000638424.1;ENST00000640050.1;ENST00000638183.1;ENST00000639174.1;ENST00000639214.1;ENST00000638329.1;ENST00000589339.6;ENST00000588571.6;ENST00000589414.6;ENST00000638591.1;ENST00000586566.2;ENST00000591238.6	10.624	8.188	7.338	0.892(8542)	0.95(667)	0.961(16711)	non tumor-specific	nAS	yes
UN_AC091736.1_UP_LS0004	chr7:135662188|135672753:+	AC091736.1	-	lncRNA gene	no	.	1.443	0.381	0.000	0.005(46)	0.006(4)	0(0)	non tumor-specific	nAS	no
DDR1_LS013	chr6:30882983|30888688:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	ENST00000418800.6	8.509	5.674	4.229	0.491(4708)	0.614(431)	0.559(9715)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRR13_LS004	chr12:53441840|53442695:+	PRR13	proline rich 13	protein coding gene	no	ENST00000551945.5	0.424	0.237	0.664	0.533(5107)	0.528(371)	0.057(995)	non tumor-specific	alt_5prime;intron_retention	yes
UN_HCFC1_LS0126	chrX:153962306|153970648:-	HCFC1	host cell factor C1	protein coding gene	no	.	0.721	0.210	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MARK2_LS0034	chr11:63904147|63904260:+	MARK2	microtubule affinity regulating kinase 2	protein coding gene	no	.	0.936	0.000	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AC010978.1_LS004	chr2:105855362|105856670:-	AC010978.1	-	lncRNA gene	no	ENST00000598281.2	0.133	0.015	0.823	0.006(55)	0.004(3)	0.007(120)	non tumor-specific	nAS	yes
LINC01358_LS013	chr1:59056749|59082568:+	LINC01358	long intergenic non-protein coding RNA 1358	lncRNA gene	no	ENST00000449812.2	0.168	0.086	0.632	0.048(456)	0.021(15)	0.023(393)	non tumor-specific	nAS	yes
UN_NPIPB5_LS0288	chr16:22535566|22535889:-	NPIPB5	nuclear pore complex interacting protein family member B5	protein coding gene	no	.	3.232	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
ELP3_LS030	chr8:28183264|28189649:+	ELP3	elongator acetyltransferase complex subunit 3	protein coding gene	no	ENST00000523357.5	0.274	0.171	1.219	0.803(7695)	0.818(574)	0.487(8470)	non tumor-specific	exon_skip	yes
CCDC32_LS006	chr15:40539355|40557216:-	CCDC32	coiled-coil domain containing 32	protein coding gene	no	ENST00000559911.5;ENST00000558113.5;ENST00000625629.2	0.412	0.322	1.049	0.541(5181)	0.578(406)	0.534(9277)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
GCC2_LS004	chr2:108449689|108452399:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	ENST00000478207.1;ENST00000482325.5	3.541	2.713	0.823	0.423(4053)	0.621(436)	0.369(6415)	non tumor-specific	exon_skip	yes
MTHFD1L_LS030	chr6:150985208|151009819:+	MTHFD1L	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like	protein coding gene	no	ENST00000478643.1	0.783	0.159	1.035	0.142(1362)	0.03(21)	0.411(7141)	non tumor-specific	exon_skip;mutex_exons	yes
SDK1_LS015	chr7:3987322|4010966:+	SDK1	sidekick cell adhesion molecule 1	protein coding gene	no	ENST00000404826.6;ENST00000389531.7;ENST00000615806.4	6.405	2.856	2.317	0.569(5447)	0.695(488)	0.707(12287)	non tumor-specific	exon_skip	yes
EPB41L1_LS044	chr20:36194360|36197859:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	ENST00000202028.9;ENST00000373950.6;ENST00000441639.5;ENST00000628415.2;ENST00000451082.5	22.004	28.015	23.337	0.951(9114)	0.967(679)	0.94(16336)	non tumor-specific	exon_skip	yes
UN_ZSCAN5A_LS0103	chr19:56299956|56313283:-	ZSCAN5A	zinc finger and SCAN domain containing 5A	protein coding gene	no	.	1.213	0.821	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TREML4_UP_LS0012	chr6:41099910|41108305:+	TREML4	triggering receptor expressed on myeloid cells like 4	protein coding gene	no	.	2.267	0.671	0.000	0.005(50)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_STOX1_LS0006	chr10:68832177|68881958:+	STOX1	storkhead box 1	protein coding gene	no	.	2.178	0.018	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
TNFRSF25_LS033	chr1:6464719|6465440:-	TNFRSF25	TNF receptor superfamily member 25	protein coding gene	no	ENST00000348333.7;ENST00000502588.5;ENST00000502730.5;ENST00000515145.1	0.281	0.139	0.772	0.404(3866)	0.275(193)	0.072(1250)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGEF2_LS012	chr1:155954969|155957713:-	ARHGEF2	Rho/Rac guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000313695.11;ENST00000361247.8;ENST00000462460.6;ENST00000313667.8;ENST00000470975.2	75.590	40.441	61.475	0.989(9476)	0.987(693)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_ACBD6_LS0049	chr1:180501617|180502045:-	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	.	6.572	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IPO11_LS0015	chr5:62511999|62512072:+	IPO11	importin 11	protein coding gene	no	.	5.769	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PTPN14_LS0006	chr1:214350699|214359679:-	PTPN14	protein tyrosine phosphatase non-receptor type 14	protein coding gene	no	.	1.694	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
AC016757.1_LS008	chr2:238227798|238231334:-	AC016757.1	-	lncRNA gene	no	ENST00000475669.5;ENST00000409942.4;ENST00000470346.2;ENST00000466075.1;ENST00000475669.5;ENST00000409942.4;ENST00000470346.2;ENST00000466075.1	0.718	0.619	2.301	0.488(4673)	0.564(396)	0.746(12962)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LRRC40_LS014	chr1:70189273|70205390:-	LRRC40	leucine rich repeat containing 40	protein coding gene	no	ENST00000370952.3	13.465	9.683	7.277	0.905(8670)	0.97(681)	0.955(16601)	non tumor-specific	nAS	yes
UBR4_LS020	chr1:19092918|19093313:-	UBR4	ubiquitin protein ligase E3 component n-recognin 4	protein coding gene	no	ENST00000375254.7;ENST00000375224.1;ENST00000492606.1	78.727	53.931	103.583	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
EWSR1_LS028	chr22:29288786|29291562:+	EWSR1	EWS RNA binding protein 1	protein coding gene	yes	ENST00000397938.6;ENST00000332035.10;ENST00000397938.6;ENST00000332035.10	77.646	43.882	31.714	0.995(9530)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_COX10-AS1_LS0019	chr17:13790313|13880302:-	COX10-AS1	COX10 antisense RNA 1	lncRNA gene	no	.	1.882	0.460	0.000	0.002(22)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PDPK1_LS0012	chr16:2556186|2557703:+	PDPK1	3-phosphoinositide dependent protein kinase 1	protein coding gene	no	.	0.784	0.428	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PLEKHO1_LS0020	chr1:150157474|150159049:-	PLEKHO1	pleckstrin homology domain containing O1	protein coding gene	yes	.	1.774	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FOXC1_UP_LS0003	chr6:1602538|1606016:+	FOXC1	forkhead box C1	protein coding gene	yes	.	6.806	2.414	0.000	0.004(38)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_POLA1_LS0077	chrX:24990812|24995805:+	POLA1	DNA polymerase alpha 1, catalytic subunit	protein coding gene	no	.	1.899	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
ANKFY1_LS007	chr17:4172680|4173354:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	ENST00000341657.8;ENST00000648043.1;ENST00000570535.5;ENST00000574367.5;ENST00000572412.5	21.675	15.862	18.189	0.97(9296)	0.987(693)	0.978(16995)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MOB1A_LS010	chr2:74172752|74178115:-	MOB1A	MOB kinase activator 1A	protein coding gene	yes	ENST00000495286.5;ENST00000488006.1	0.288	0.142	0.829	0.557(5338)	0.551(387)	0.355(6165)	non tumor-specific	alt_3prime;exon_skip	yes
E2F4_LS008	chr16:67192870|67193422:+	E2F4	E2F transcription factor 4	protein coding gene	no	ENST00000568839.5	0.004	0.000	0.643	0.008(73)	0.001(1)	0.022(380)	non tumor-specific	alt_3prime;exon_skip	yes
INVS_LS022	chr9:100253136|100264822:+	INVS	inversin	protein coding gene	no	ENST00000262457.6;ENST00000262456.6	10.789	7.035	9.741	0.935(8954)	0.983(690)	0.974(16931)	non tumor-specific	exon_skip	yes
MEDAG_LS003	chr13:30917512|30921018:+	MEDAG	mesenteric estrogen dependent adipogenesis	protein coding gene	no	.;.	4.956	1.714	0.000	0.004(34)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MT-TH_UP_LS0043	chrM:6363|11226:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	1794.666	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9orf16_LS0101	chr9:128163814|128163860:-	C9orf16	chromosome 9 open reading frame 16	protein coding gene	no	.	6.603	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC079160.1_LS005	chr4:84012119|84148047:-	AC079160.1	-	lncRNA gene	no	ENST00000508406.1	0.888	0.019	0.727	0.058(560)	0.001(1)	0.032(559)	non tumor-specific	nAS	yes
GLI1_LS014	chr12:57466389|57467333:+	GLI1	GLI family zinc finger 1	protein coding gene	yes	ENST00000543426.5;ENST00000228682.6;ENST00000546141.5;ENST00000528467.1	1.795	1.303	2.498	0.301(2880)	0.393(276)	0.725(12594)	non tumor-specific	nAS	yes
C20orf194_LS021	chr20:3318400|3322217:-	C20orf194	chromosome 20 open reading frame 194	protein coding gene	no	ENST00000252032.9	8.648	9.302	11.701	0.748(7167)	0.879(617)	0.957(16642)	non tumor-specific	exon_skip	yes
SHANK3_LS007	chr22:50679428|50683340:+	SHANK3	SH3 and multiple ankyrin repeat domains 3	protein coding gene	no	ENST00000414786.6;ENST00000445220.5;ENST00000262795.5	12.047	14.740	21.620	0.763(7309)	0.919(645)	0.922(16021)	non tumor-specific	exon_skip	yes
UN_BRINP3_LS0034	chr1:190475985|190477448:-	BRINP3	BMP/retinoic acid inducible neural specific 3	protein coding gene	no	.	1.992	0.153	0.000	0.026(246)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_AC021683.2_LS0049	chr17:77561867|77561921:-	AC021683.2	-	lncRNA gene	no	.	7.814	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
ABCC11_LS024	chr16:48211199|48213443:-	ABCC11	ATP binding cassette subfamily C member 11	protein coding gene	no	ENST00000353782.9;ENST00000356608.6;ENST00000394747.5;ENST00000394748.5;ENST00000567385.5	5.867	1.048	0.933	0.107(1028)	0.141(99)	0.226(3931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FAM3D-AS1_LS0003	chr3:58613149|58639152:+	FAM3D-AS1	FAM3D antisense RNA 1	lncRNA gene	no	.	1.930	0.140	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM159_LS010	chr16:21161278|21170437:+	TMEM159	transmembrane protein 159	protein coding gene	no	ENST00000233047.8;ENST00000572258.5;ENST00000574092.1;ENST00000261388.7;ENST00000572599.5	31.161	23.160	46.114	0.974(9329)	0.97(681)	0.973(16918)	non tumor-specific	alt_5prime;exon_skip	yes
ZNF121_LS002	chr19:9567109|9567648:-	ZNF121	zinc finger protein 121	protein coding gene	no	ENST00000586602.5;ENST00000591447.1	0.439	0.283	0.929	0.619(5931)	0.65(456)	0.4(6956)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CLN6_LS016	chr15:68218650|68229502:-	CLN6	CLN6 transmembrane ER protein	protein coding gene	no	ENST00000249806.10;ENST00000638076.1;ENST00000567060.5;ENST00000566347.5;ENST00000637494.1;ENST00000636212.1;ENST00000637823.1;ENST00000637667.1;ENST00000564752.1;ENST00000636020.1	16.650	6.431	10.392	0.977(9362)	0.99(695)	0.975(16949)	non tumor-specific	nAS	yes
ATP13A2_LS029	chr1:17000312|17000400:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000463860.5;ENST00000617114.4;ENST00000510069.5;ENST00000511957.5;ENST00000508222.5	34.255	22.150	27.899	0.98(9386)	0.967(679)	0.979(17014)	non tumor-specific	nAS	yes
MYO5A_LS011	chr15:52337884|52340196:-	MYO5A	myosin VA	protein coding gene	no	ENST00000553916.5;ENST00000399228.5;ENST00000568914.1	2.433	0.987	4.424	0.702(6726)	0.789(554)	0.906(15753)	non tumor-specific	exon_skip	yes
SYCP2_LS052	chr20:59912418|59914109:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	.;.	1.043	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZYG11A_LS013	chr1:52877969|52881471:+	ZYG11A	zyg-11 family member A, cell cycle regulator	protein coding gene	no	ENST00000612017.4;ENST00000371532.5;ENST00000371528.1	4.082	1.298	0.981	0.245(2349)	0.261(183)	0.144(2499)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CABCOCO1_UP_LS0002	chr10:61482825|61482922:+	CABCOCO1	ciliary associated calcium binding coiled-coil 1	protein coding gene	no	.	2.311	0.218	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
CA5BP1_LS002	chrX:15675024|15675690:+	CA5BP1	carbonic anhydrase 5B pseudogene 1	pseudogene	no	ENST00000448692.5	0.300	0.176	0.704	0.206(1976)	0.218(153)	0.208(3609)	non tumor-specific	nAS	yes
UN_UBA7_LS0023	chr3:49809483|49809542:-	UBA7	ubiquitin like modifier activating enzyme 7	protein coding gene	no	.	5.842	0.863	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_SLC4A11_LS0001	chr20:3227856|3228249:-	SLC4A11	solute carrier family 4 member 11	protein coding gene	no	.	26.713	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_DDX11L2_LS0003	chr2:113600214|113600718:-	DDX11L2	DEAD/H-box helicase 11 like 2 (pseudogene)	pseudogene	no	.	1.178	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
AL358234.1_LS002	chr10:28436221|28495721:-	AL358234.1	-	lncRNA gene	no	ENST00000421132.1	0.609	0.170	0.684	0.025(235)	0.047(33)	0.028(486)	non tumor-specific	nAS	yes
DARS2_LS014	chr1:173840973|173856666:+	DARS2	aspartyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000647788.1	3.015	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	exon_skip	yes
CDH6_LS013	chr5:31317492|31317673:+	CDH6	cadherin 6	protein coding gene	no	ENST00000514738.5;ENST00000265071.2;ENST00000504835.1	22.500	8.001	5.011	0.797(7632)	0.842(591)	0.838(14572)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02015_LS0024	chr3:177895776|177899011:+	LINC02015	long intergenic non-protein coding RNA 2015	lncRNA gene	no	.	3.372	0.000	0.000	0.004(43)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MAP2K5_LS0041	chr15:67749978|67766722:+	MAP2K5	mitogen-activated protein kinase kinase 5	protein coding gene	no	.	1.857	0.236	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_PRKCA_LS0058	chr17:66788979|66791195:+	PRKCA	protein kinase C alpha	protein coding gene	yes	.	2.123	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UBE2B_LS018	chr5:134389052|134390225:+	UBE2B	ubiquitin conjugating enzyme E2 B	protein coding gene	no	ENST00000506787.5	0.132	0.072	1.340	0.673(6444)	0.556(390)	0.554(9625)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TLE6_LS0005	chr19:2983314|2986829:+	TLE6	TLE family member 6, subcortical maternal complex member	protein coding gene	no	.	1.735	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL450345.1_UP_LS0026	chr6:164184659|164229503:+	AL450345.1	-	lncRNA gene	no	.	1.315	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
DLEU1-AS1_LS002	chr13:50526007|50527279:-	DLEU1-AS1	DLEU1 antisense RNA 1	lncRNA gene	no	ENST00000428276.1	0.716	0.089	0.704	0.02(193)	0.009(6)	0.065(1128)	non tumor-specific	nAS	yes
UN_AC244102.1_UP_LS0010	chrX:152714682|152735148:+	AC244102.1	-	lncRNA gene	no	.	2.203	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SVIL_LS036	chr10:29524715|29526961:-	SVIL	supervillin	protein coding gene	no	ENST00000355867.8	0.618	8.187	4.625	0.223(2133)	0.627(440)	0.8(13912)	non tumor-specific	exon_skip	yes
PTAR1_LS007	chr9:69718684|69723326:-	PTAR1	protein prenyltransferase alpha subunit repeat containing 1	protein coding gene	no	ENST00000377200.9;ENST00000415701.6;ENST00000340434.4	9.471	6.544	6.730	0.901(8636)	0.97(681)	0.931(16178)	non tumor-specific	alt_3prime;exon_skip	yes
OTOS_LS001	chr2:240139354|240140062:-	OTOS	otospiralin	protein coding gene	no	ENST00000391989.6;ENST00000319460.1	5.843	10.491	9.641	0.151(1445)	0.113(79)	0.252(4387)	non tumor-specific	exon_skip	yes
MORC3_LS003	chr21:36333718|36336874:+	MORC3	MORC family CW-type zinc finger 3	protein coding gene	no	ENST00000492336.5;ENST00000400485.5;ENST00000485933.1	7.024	5.503	10.623	0.92(8812)	0.972(682)	0.97(16859)	non tumor-specific	exon_skip	yes
PIK3R6_LS015	chr17:8828990|8829706:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	ENST00000613555.4;ENST00000611951.4;ENST00000619866.4;ENST00000614407.1	3.152	1.087	1.818	0.374(3583)	0.234(164)	0.678(11778)	non tumor-specific	alt_5prime	yes
SPTBN1_LS031	chr2:54649989|54653609:+	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	ENST00000356805.8;ENST00000615901.4;ENST00000333896.5	229.602	238.047	179.543	0.993(9518)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
MIR100HG_LS050	chr11:122295005|122301325:-	MIR100HG	mir-100-let-7a-2-mir-125b-1 cluster host gene	lncRNA gene	yes	ENST00000648084.1	0.128	0.035	0.793	0.054(522)	0.137(96)	0.147(2550)	non tumor-specific	nAS	yes
AL162742.1_LS001	chr10:104323570|104323938:+	AL162742.1	-	lncRNA gene	no	ENST00000434792.1	0.748	0.110	0.923	0.022(210)	0.009(6)	0.126(2187)	non tumor-specific	nAS	yes
UN_AL671883.2_UP_LS0012	chr6:31269019|31354047:+	AL671883.2	-	pseudogene	no	.	53.270	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC105411.1_LS003	chr16:80157682|80159337:-	AC105411.1	-	lncRNA gene	no	ENST00000568776.5	4.744	0.613	0.824	0.026(248)	0.007(5)	0.211(3671)	non tumor-specific	nAS	yes
USP48_LS018	chr1:21721163|21721650:-	USP48	ubiquitin specific peptidase 48	protein coding gene	no	ENST00000374732.7	0.770	0.457	10.868	0.9(8620)	0.906(636)	0.977(16976)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HS1BP3_LS0010	chr2:20592817|20593109:-	HS1BP3	HCLS1 binding protein 3	protein coding gene	no	.	2.643	1.852	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_C14orf119_UP_LS0001	chr14:23058042|23058285:+	C14orf119	chromosome 14 open reading frame 119	protein coding gene	no	.	2.206	0.252	0.000	0.018(170)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02038_UP_LS0011	chr3:193852617|193868965:-	LINC02038	long intergenic non-protein coding RNA 2038	lncRNA gene	no	.	1.199	0.193	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
DCAF6_LS006	chr1:167951861|167974830:+	DCAF6	DDB1 and CUL4 associated factor 6	protein coding gene	no	ENST00000432587.6	0.111	0.139	0.812	0.532(5098)	0.625(439)	0.278(4833)	non tumor-specific	exon_skip	yes
UN_AC243960.1_UP_LS0006	chr19:41532005|41535728:+	AC243960.1	-	lncRNA gene	no	.	1.904	0.734	0.000	0.022(213)	0.043(30)	0(0)	non tumor-specific	nAS	no
UN_UBXN11_LS0040	chr1:26297024|26297427:-	UBXN11	UBX domain protein 11	protein coding gene	no	.	3.760	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_MYO16_LS0058	chr13:109189495|109201414:-	MYO16	myosin XVI	protein coding gene	no	.	3.123	0.552	0.000	0.008(75)	0.01(7)	0(0)	non tumor-specific	nAS	no
RAI1_LS002	chr17:17681793|17684065:+	RAI1	ribonuclease A family member 12 (inactive)	protein coding gene	no	.;.	1.336	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SMG1_LS0055	chr16:18860210|18860667:-	SMG1	SMG1 nonsense mediated mRNA decay associated PI3K related kinase	protein coding gene	no	.	1.590	0.240	0.000	0.003(33)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
ADARB2-AS1_LS002	chr10:1526899|1556611:+	ADARB2-AS1	ADARB2 antisense RNA 1	lncRNA gene	no	ENST00000421697.2	0.848	0.081	0.758	0.07(675)	0.068(48)	0.032(561)	non tumor-specific	nAS	yes
UN_AHNAK_LS0464	chr11:62520655|62521946:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	3.340	1.566	0.000	0.006(54)	0.011(8)	0(0)	non tumor-specific	nAS	no
AASDH_LS022	chr4:56371643|56378148:-	AASDH	aminoadipate-semialdehyde dehydrogenase	protein coding gene	no	ENST00000602986.5;ENST00000451613.5;ENST00000513376.5;ENST00000205214.10;ENST00000503808.5;ENST00000502617.1	6.185	4.801	5.851	0.868(8314)	0.959(673)	0.95(16513)	non tumor-specific	exon_skip	yes
WDR47_LS009	chr1:108986680|108991254:-	WDR47	WD repeat domain 47	protein coding gene	no	ENST00000400794.7;ENST00000369962.7;ENST00000361054.7;ENST00000369965.8;ENST00000357672.7	13.926	15.425	12.967	0.918(8795)	0.95(667)	0.974(16923)	non tumor-specific	exon_skip	yes
KLK13_LS004	chr19:51058674|51060036:-	KLK13	kallikrein related peptidase 13	protein coding gene	no	ENST00000376799.9;ENST00000156476.6;ENST00000602090.5	0.096	0.242	1.202	0.18(1728)	0.15(105)	0.089(1552)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SPIN2B_LS009	chrX:57120634|57121293:-	SPIN2B	spindlin family member 2B	protein coding gene	no	ENST00000275988.5	0.104	0.187	1.800	0.788(7554)	0.856(601)	0.796(13832)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
USP2_LS001	chr11:119356922|119357187:-	USP2	ubiquitin specific peptidase 2	protein coding gene	no	ENST00000455332.6;ENST00000260187.6;ENST00000525735.1	6.759	15.912	16.533	0.694(6645)	0.895(628)	0.921(16007)	non tumor-specific	alt_3prime	yes
UN_CNOT6L_LS0008	chr4:77740203|77742141:-	CNOT6L	CCR4-NOT transcription complex subunit 6 like	protein coding gene	no	.	0.586	0.237	0.000	0.01(95)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
HNRNPA2B1_LS010	chr7:26192315|26193251:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	.;.	85.929	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TTC38_LS007	chr22:46275421|46278586:+	TTC38	tetratricopeptide repeat domain 38	protein coding gene	no	ENST00000381031.7;ENST00000421359.5;ENST00000422713.1	36.467	42.300	28.466	0.981(9398)	0.996(699)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_TRIM26_LS0017	chr6:30189194|30189418:-	TRIM26	tripartite motif containing 26	protein coding gene	no	.	1.905	3.215	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
CPEB1-AS1_LS002	chr15:82649941|82650029:+	CPEB1-AS1	CPEB1 antisense RNA 1	lncRNA gene	no	ENST00000560650.1	0.889	0.311	1.487	0.032(309)	0.009(6)	0.518(9008)	non tumor-specific	nAS	yes
ERMP1_LS011	chr9:5805785|5810011:-	ERMP1	endoplasmic reticulum metallopeptidase 1	protein coding gene	no	ENST00000462592.5;ENST00000214893.9;ENST00000339450.9;ENST00000489219.5;ENST00000487088.5	26.601	27.323	8.024	0.944(9047)	0.977(686)	0.962(16722)	non tumor-specific	exon_skip	yes
EPRS_LS026	chr1:220019079|220019988:-	EPRS	glutamyl-prolyl-tRNA synthetase 1	protein coding gene	no	ENST00000366923.7;ENST00000609181.5	74.447	42.804	31.101	0.971(9304)	0.989(694)	0.977(16981)	non tumor-specific	alt_5prime;exon_skip	yes
FANCI_LS037	chr15:89281835|89283136:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	ENST00000300027.12;ENST00000310775.11;ENST00000447611.6;ENST00000561894.1	14.090	2.768	2.314	0.899(8610)	0.759(533)	0.792(13759)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MRVI1_LS026	chr11:10630071|10631991:-	MRVI1	inositol 1,4,5-triphosphate receptor associated 1	protein coding gene	yes	ENST00000532037.5	0.058	0.034	0.689	0.007(63)	0.013(9)	0.087(1515)	non tumor-specific	exon_skip	yes
HLA-DQB1_LS016	chr6:32662248|32664798:-	HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	protein coding gene	no	ENST00000399079.7;ENST00000374943.8;ENST00000434651.6;ENST00000399084.5;ENST00000399079.7;ENST00000374943.8;ENST00000434651.6;ENST00000399084.5	274.832	175.583	33.170	0.996(9546)	0.996(699)	0.953(16565)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ST18_LS027	chr8:52206750|52212079:-	ST18	ST18 C2H2C-type zinc finger transcription factor	protein coding gene	no	ENST00000518037.5	1.556	0.046	0.943	0.026(247)	0.003(2)	0.067(1161)	non tumor-specific	exon_skip	yes
OFCC1_LS019	chr6:9840514|9841932:-	OFCC1	orofacial cleft 1 candidate 1	pseudogene	no	ENST00000469656.5	2.609	0.000	0.683	0.003(29)	0(0)	0.004(77)	non tumor-specific	exon_skip	yes
UN_ANP32A_LS0027	chr15:68784580|68787473:+	ANP32A	acidic nuclear phosphoprotein 32 family member A	protein coding gene	yes	.	12.023	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NAA60_LS0068	chr16:3486400|3486485:-	NAA60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein coding gene	no	.	2.771	0.073	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
KCNH6_LS009	chr17:63538264|63538410:+	KCNH6	potassium voltage-gated channel subfamily H member 6	protein coding gene	no	ENST00000456941.6;ENST00000581784.5;ENST00000583465.1;ENST00000314672.9;ENST00000583023.1	15.776	2.620	1.410	0.111(1060)	0.181(127)	0.165(2860)	non tumor-specific	nAS	yes
UN_COL4A2_LS0065	chr13:110485027|110485664:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	.	15.729	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC25A16_LS0023	chr10:68517293|68527246:-	SLC25A16	solute carrier family 25 member 16	protein coding gene	no	.	1.364	0.017	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CTF1_LS0010	chr16:30899533|30902084:+	CTF1	cardiotrophin 1	protein coding gene	no	.	4.663	0.172	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PSG8_LS0013	chr19:42775162|42790772:+	PSG8	pregnancy specific beta-1-glycoprotein 8	protein coding gene	no	.	4.084	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	nAS	no
CNST_LS016	chr1:246660334|246665700:+	CNST	consortin, connexin sorting protein	protein coding gene	no	ENST00000366513.8	22.430	18.534	17.235	0.94(9007)	0.98(688)	0.97(16865)	non tumor-specific	exon_skip	yes
UN_APBA2_LS0036	chr15:29108389|29113098:+	APBA2	amyloid beta precursor protein binding family A member 2	protein coding gene	no	.	4.770	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
KIF9_LS031	chr3:47277375|47282140:-	KIF9	kinesin family member 9	protein coding gene	no	.;.	2.470	0.408	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
KIAA1324_LS028	chr1:109197654|109197979:+	KIAA1324	endosome-lysosome associated apoptosis and autophagy regulator 1	protein coding gene	no	ENST00000369939.7;ENST00000457623.6;ENST00000529753.5;ENST00000527996.5;ENST00000369938.5;ENST00000369936.2	66.141	66.657	5.474	0.648(6204)	0.677(475)	0.7(12162)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLK4_LS016	chr4:127891196|127892365:+	PLK4	polo like kinase 4	protein coding gene	no	ENST00000508113.1	0.157	0.012	0.707	0.213(2044)	0.036(25)	0.092(1598)	non tumor-specific	exon_skip;intron_retention	yes
YIPF4_LS001	chr2:32278234|32290483:+	YIPF4	Yip1 domain family member 4	protein coding gene	no	ENST00000238831.8;ENST00000495355.1;ENST00000437765.1	27.477	17.263	30.591	0.928(8890)	0.94(660)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM136_LS0001	chr11:120325368|120327127:+	TMEM136	TLC domain containing 5	protein coding gene	no	.	1.144	0.391	0.000	0.005(48)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_IGKV2-36_UP_LS0003	chr2:89297727|89319633:-	IGKV2-36	immunoglobulin kappa variable 2-36 (pseudogene)	no	no	.	92.596	13.161	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
CRYGN_LS007	chr7:151436325|151436823:-	CRYGN	crystallin gamma N	protein coding gene	no	ENST00000462809.1	0.129	0.114	0.878	0.109(1041)	0.192(135)	0.201(3501)	non tumor-specific	nAS	yes
AP5Z1_LS032	chr7:4790887|4791115:+	AP5Z1	adaptor related protein complex 5 subunit zeta 1	protein coding gene	no	ENST00000647984.1;ENST00000348624.5;ENST00000477680.6;ENST00000649063.1;ENST00000650310.1;ENST00000648925.1;ENST00000496303.6;ENST00000649419.1;ENST00000650581.1;ENST00000648360.1;ENST00000649736.1;ENST00000469614.1;ENST00000490487.1;ENST00000648237.1	66.495	24.700	58.507	0.955(9149)	0.927(651)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PLD3_LS046	chr19:40366915|40367601:+	PLD3	phospholipase D family member 3	protein coding gene	no	ENST00000492243.1	0.681	0.509	0.706	0.006(62)	0.01(7)	0.171(2972)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AGO1_LS0016	chr1:35902079|35902204:+	AGO1	argonaute RISC component 1	protein coding gene	no	.	2.112	0.377	0.000	0.056(537)	0.023(16)	0(0)	non tumor-specific	alt_5prime	no
VPS8_LS009	chr3:184812789|184813745:+	VPS8	VPS8 subunit of CORVET complex	protein coding gene	no	ENST00000471655.1	0.125	0.005	0.624	0.002(23)	0.004(3)	0.013(229)	non tumor-specific	exon_skip	yes
RLIM_LS002	chrX:74594389|74595809:-	RLIM	ring finger protein, LIM domain interacting	protein coding gene	no	ENST00000332687.10;ENST00000349225.2	15.971	11.147	7.472	0.926(8870)	0.977(686)	0.961(16698)	non tumor-specific	nAS	yes
UN_LINGO2_LS0035	chr9:28620249|28621411:+	LINGO2	leucine rich repeat and Ig domain containing 2	protein coding gene	no	.	2.151	0.511	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0616	chr21:8401527|8445657:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	514.454	36.746	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
EDNRB-AS1_LS001	chr13:77828415|77829028:+	EDNRB-AS1	EDNRB antisense RNA 1	lncRNA gene	no	ENST00000422405.1	0.911	0.000	0.710	0(1)	0(0)	0.012(207)	non tumor-specific	nAS	yes
CEACAM22P_LS001	chr19:44538513|44539167:-	CEACAM22P	CEA cell adhesion molecule 22, pseudogene	pseudogene	no	ENST00000446628.5	4.989	0.223	0.802	0.009(87)	0.009(6)	0.151(2623)	non tumor-specific	nAS	yes
UN_KIF22_LS0044	chr16:29800048|29802848:+	KIF22	kinesin family member 22	protein coding gene	no	.	9.537	0.427	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
COL4A2_LS005	chr13:110308123|110357472:+	COL4A2	collagen type IV alpha 2 chain	protein coding gene	no	ENST00000400163.7;ENST00000360467.6;ENST00000649101.1;ENST00000650540.1	112.137	75.289	60.186	0.964(9232)	0.987(693)	0.947(16462)	non tumor-specific	exon_skip	yes
SEC24B_LS026	chr4:109531522|109532639:+	SEC24B	SEC24 homolog B, COPII coat complex component	protein coding gene	no	ENST00000504968.6;ENST00000399100.6;ENST00000265175.5	54.674	37.415	49.957	0.992(9508)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_NKILA_UP_LS0006	chr20:57580791|57580962:+	NKILA	NF-kappaB interacting lncRNA	lncRNA gene	no	.	0.815	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KPNA2P3_LS0019	chr17:64751601|64751807:-	KPNA2P3	karyopherin subunit alpha 2 pseudogene 3	pseudogene	no	.	3.145	1.870	0.000	0.586(5613)	0.58(407)	0(0)	non tumor-specific	nAS	no
SENP7_LS009	chr3:101332862|101337509:-	SENP7	SUMO specific peptidase 7	protein coding gene	no	ENST00000394095.6;ENST00000394091.5;ENST00000394094.6;ENST00000314261.11;ENST00000348610.3;ENST00000394095.6;ENST00000394091.5;ENST00000394094.6;ENST00000314261.11;ENST00000348610.3	8.711	6.551	10.505	0.892(8544)	0.966(678)	0.971(16884)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SASS6_LS014	chr1:100122484|100123210:-	SASS6	SAS-6 centriolar assembly protein	protein coding gene	no	ENST00000287482.5;ENST00000462159.1	4.780	1.649	1.419	0.706(6763)	0.679(477)	0.695(12072)	non tumor-specific	exon_skip	yes
UN_NRXN2_LS0044	chr11:64668604|64669095:-	NRXN2	neurexin 2	protein coding gene	no	.	1.221	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NRBF2P2_UP_LS0001	chr3:45996035|46000913:+	NRBF2P2	nuclear receptor binding factor 2 pseudogene 2	pseudogene	no	.	3.833	0.684	0.000	0.033(317)	0.028(20)	0(0)	non tumor-specific	nAS	no
TTC7A_LS015	chr2:46978907|46993450:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	ENST00000409245.5;ENST00000319190.9;ENST00000461601.5;ENST00000394850.6;ENST00000441914.5;ENST00000409825.5;ENST00000474321.6;ENST00000491786.5	33.214	23.263	24.174	0.975(9339)	0.994(698)	0.978(17008)	non tumor-specific	exon_skip	yes
MBTPS1_LS010	chr16:84066613|84067667:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	ENST00000570064.5;ENST00000343411.7	108.313	76.670	66.300	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LRWD1_LS019	chr7:102469646|102469742:+	LRWD1	leucine rich repeats and WD repeat domain containing 1	protein coding gene	no	ENST00000292616.9;ENST00000473880.5;ENST00000468175.1	42.227	15.904	24.314	0.992(9500)	0.991(696)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TUBB_LS0207	chr6:30723992|30724083:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	4.334	0.156	0.000	0.007(68)	0.004(3)	0(0)	non tumor-specific	nAS	no
KLHL14_LS002	chr18:32677330|32680169:-	KLHL14	kelch like family member 14	protein coding gene	no	ENST00000359358.8	8.728	8.247	1.407	0.245(2350)	0.422(296)	0.424(7362)	non tumor-specific	nAS	yes
DGKI_LS038	chr7:137623554|137645472:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000453654.6;ENST00000288490.9;ENST00000446122.5;ENST00000424189.6;ENST00000614521.1	3.219	0.559	1.377	0.088(845)	0.091(64)	0.298(5187)	non tumor-specific	nAS	yes
IGHV3-36_LS001	chr14:106393128|106393186:-	IGHV3-36	immunoglobulin heavy variable 3-36 (pseudogene)	no	no	ENST00000520848.1	0.381	0.000	0.492	0.001(11)	0(0)	0(8)	non tumor-specific	nAS	yes
MPIG6B_LS005	chr6:31723986|31724142:+	MPIG6B	megakaryocyte and platelet inhibitory receptor G6b	protein coding gene	no	ENST00000460663.5;ENST00000480039.5;ENST00000375810.8;ENST00000375809.7;ENST00000649779.1;ENST00000466312.5;ENST00000471545.1;ENST00000375806.2	0.787	0.451	1.586	0.104(995)	0.195(137)	0.378(6569)	non tumor-specific	exon_skip;intron_retention	yes
TMEM175_LS022	chr4:948154|950421:+	TMEM175	transmembrane protein 175	protein coding gene	no	ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5;ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5;ENST00000264771.8;ENST00000515876.5;ENST00000504505.1;ENST00000510493.5;ENST00000514546.5	4.509	3.954	15.117	0.978(9373)	0.996(699)	0.978(17002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
GATB_LS013	chr4:151708101|151716009:-	GATB	glutamyl-tRNA amidotransferase subunit B	protein coding gene	no	ENST00000263985.10;ENST00000515564.5;ENST00000503160.5;ENST00000505211.5;ENST00000512306.5;ENST00000515490.1	31.787	22.631	15.940	0.992(9509)	0.996(699)	0.977(16986)	non tumor-specific	exon_skip	yes
RYR2_LS074	chr1:237717368|237718462:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7;ENST00000609119.1	3.079	2.141	3.650	0.115(1102)	0.215(151)	0.654(11367)	non tumor-specific	nAS	yes
UN_LINC01423_LS0005	chr21:38328599|38332426:-	LINC01423	long intergenic non-protein coding RNA 1423	lncRNA gene	no	.	4.490	0.701	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_CHD8_LS0015	chr14:21386176|21386552:-	CHD8	chromodomain helicase DNA binding protein 8	protein coding gene	no	.	1.245	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_CTBP1-DT_LS0037	chr4:1254195|1254367:+	CTBP1-DT	CTBP1 divergent transcript	lncRNA gene	no	.	1.097	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PHRF1_UP_LS0001	chr11:559860|561762:+	PHRF1	PHD and ring finger domains 1	protein coding gene	no	.	10.009	2.091	0.000	0.055(523)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZMYM4_LS012	chr1:35325405|35358925:+	ZMYM4	zinc finger MYM-type containing 4	protein coding gene	no	ENST00000314607.10;ENST00000441447.1	8.820	5.713	4.376	0.853(8173)	0.933(655)	0.918(15958)	non tumor-specific	exon_skip	yes
UN_SCUBE2_LS0002	chr11:9020862|9020958:-	SCUBE2	signal peptide, CUB domain and EGF like domain containing 2	protein coding gene	yes	.	18.753	8.586	0.000	0.018(171)	0.026(18)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
LINC02448_LS002	chr12:59523983|59524061:-	LINC02448	long intergenic non-protein coding RNA 2448	lncRNA gene	no	ENST00000548613.1	4.141	0.000	0.659	0.004(36)	0(0)	0.011(191)	non tumor-specific	nAS	yes
UN_MUC1_LS0011	chr1:155186007|155186183:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	4.973	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DSCAM_LS025	chr21:40189238|40276097:-	DSCAM	DS cell adhesion molecule	protein coding gene	no	ENST00000400454.5;ENST00000617870.4;ENST00000404019.2	5.377	0.592	4.365	0.066(637)	0.007(5)	0.179(3103)	non tumor-specific	alt_5prime	yes
RPL10_LS003	chrX:154397864|154398065:+	RPL10	ribosomal protein L15	protein coding gene	yes	ENST00000479366.1	0.258	1.676	0.820	0.265(2538)	0.208(146)	0.368(6393)	non tumor-specific	alt_3prime;intron_retention	yes
GRK2_LS011	chr11:67280783|67281093:+	GRK2	G protein-coupled receptor kinase 2	protein coding gene	no	ENST00000308595.9;ENST00000526285.1	152.507	81.367	75.550	0.991(9493)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
MAST4_LS063	chr5:67162788|67163147:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11;ENST00000443808.1	9.539	8.802	11.127	0.861(8250)	0.962(675)	0.938(16299)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TYW1B_LS0008	chr7:72609733|72618834:+	TYW1B	tRNA-yW synthesizing protein 1 homolog B	protein coding gene	no	.	3.301	0.687	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPTE2P1_LS006	chr13:24940785|24941987:-	TPTE2P1	transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1	pseudogene	no	ENST00000649209.1;ENST00000429698.1	0.380	0.503	1.440	0.175(1679)	0.275(193)	0.384(6680)	non tumor-specific	nAS	yes
UN_SH3RF1_LS0012	chr4:169120989|169121884:-	SH3RF1	SH3 domain containing ring finger 1	protein coding gene	no	.	2.142	2.862	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ITGA7_LS0034	chr12:55698893|55699870:-	ITGA7	integrin subunit alpha 7	protein coding gene	yes	.	7.809	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ACBD4_LS026	chr17:45139160|45142583:+	ACBD4	acyl-CoA binding domain containing 4	protein coding gene	no	ENST00000619916.4;ENST00000376955.8	4.050	2.047	2.269	0.576(5518)	0.672(472)	0.862(14978)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC093833.1_UP_LS0013	chr2:45037780|45051812:+	AC093833.1	-	lncRNA gene	no	.	1.254	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AC010642.2_LS001	chr19:58312288|58312970:-	AC010642.2	-	lncRNA gene	no	ENST00000634676.1	1.061	0.443	1.274	0.24(2301)	0.215(151)	0.691(12006)	non tumor-specific	nAS	yes
UN_OFCC1_LS0014	chr6:10141497|10141621:+	OFCC1	orofacial cleft 1 candidate 1	pseudogene	no	.	1.103	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BNIP3L_LS0004	chr8:26384199|26391243:+	BNIP3L	BCL2 interacting protein 3 like	protein coding gene	yes	.	1.560	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ATP6V1A_LS007	chr3:113778835|113781050:+	ATP6V1A	ATPase H+ transporting V1 subunit A	protein coding gene	no	ENST00000273398.7;ENST00000496747.5;ENST00000475322.1;ENST00000273398.7;ENST00000496747.5;ENST00000475322.1	27.212	25.652	8.376	0.944(9040)	0.976(685)	0.964(16762)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPLP0P6_LS0059	chr2:38482132|38482282:-	RPLP0P6	ribosomal protein lateral stalk subunit P0 pseudogene 6	pseudogene	no	.	6.416	0.914	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
ACSM4_LS007	chr12:7322541|7323234:+	ACSM4	acyl-CoA synthetase medium chain family member 4	protein coding gene	no	ENST00000399422.4	3.293	0.320	0.654	0.001(11)	0.001(1)	0.018(320)	non tumor-specific	intron_retention	yes
UN_RAF1_LS0034	chr3:12618747|12663369:-	RAF1	ribonuclease A family member 3	protein coding gene	yes	.	10.051	0.326	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
RPUSD3_LS005	chr3:9840307|9840532:-	RPUSD3	RNA pseudouridine synthase D3	protein coding gene	no	ENST00000423108.5;ENST00000433535.6;ENST00000383820.9;ENST00000424438.5;ENST00000418713.5	74.480	36.413	37.548	0.996(9544)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PRKD2_LS026	chr19:46716220|46716951:-	PRKD2	protein kinase D2	protein coding gene	no	ENST00000598633.1;ENST00000598633.1	0.030	0.027	0.799	0.235(2255)	0.4(281)	0.265(4612)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
AKR1C2_LS044	chr10:5004014|5013519:-	AKR1C2	aldo-keto reductase family 1 member C2	protein coding gene	no	.;.	1.151	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC005042.2_LS002	chr2:158690956|158753635:+	AC005042.2	-	lncRNA gene	no	ENST00000449526.1	0.784	0.053	0.692	0.006(55)	0.001(1)	0.008(145)	non tumor-specific	nAS	yes
UN_AL445487.1_UP_LS0018	chr9:107422607|107448378:-	AL445487.1	-	pseudogene	no	.	3.389	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC055717.2_LS0024	chr12:130042257|130043919:-	AC055717.2	-	lncRNA gene	no	.	1.504	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	nAS	no
CACNB3_LS017	chr12:48818558|48823344:+	CACNB3	calcium voltage-gated channel auxiliary subunit beta 3	protein coding gene	no	ENST00000547818.5	0.033	0.017	0.738	0.306(2934)	0.283(199)	0.257(4467)	non tumor-specific	alt_5prime	yes
UN_CD276_LS0101	chr15:73713220|73713313:-	CD276	CD276 molecule	protein coding gene	no	.	3.821	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
WDR61_LS003	chr15:78278301|78288289:-	WDR61	WD repeat domain 61	protein coding gene	no	ENST00000558453.5	0.360	0.186	1.623	0.308(2953)	0.386(271)	0.661(11486)	non tumor-specific	exon_skip	yes
RPLP0_LS043	chr12:120200150|120200730:-	RPLP0	ribosomal protein lateral stalk subunit P0	protein coding gene	no	ENST00000547191.5;ENST00000547191.5	0.073	12.434	1.309	0.069(657)	0.085(60)	0.688(11966)	non tumor-specific	alt_3prime;alt_5prime	yes
LINC00968_LS004	chr8:56520567|56544079:-	LINC00968	long intergenic non-protein coding RNA 968	lncRNA gene	no	ENST00000521483.1	0.277	0.043	0.840	0.008(75)	0.093(65)	0.14(2442)	non tumor-specific	nAS	yes
PACSIN3_LS011	chr11:47182559|47183004:-	PACSIN3	protein kinase C and casein kinase substrate in neurons 3	protein coding gene	no	ENST00000530513.5;ENST00000528201.1	0.064	0.085	1.464	0.666(6384)	0.735(516)	0.65(11304)	non tumor-specific	exon_skip	yes
UN_GUCY1B1_LS0017	chr4:155802585|155803630:+	GUCY1B1	guanylate cyclase 1 soluble subunit beta 1	protein coding gene	no	.	7.703	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
FAM234B_LS015	chr12:13076143|13141481:+	FAM234B	family with sequence similarity 234 member B	protein coding gene	no	ENST00000537625.1	0.112	0.077	0.621	0.061(589)	0.078(55)	0.024(421)	non tumor-specific	nAS	yes
UN_KANK1_LS0022	chr9:504243|539516:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	0.623	0.133	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	nAS	no
PEMT_LS011	chr17:17509545|17576920:-	PEMT	phosphatidylethanolamine N-methyltransferase	protein coding gene	no	ENST00000580147.5	0.785	0.570	0.638	0.867(8303)	0.88(618)	0.082(1422)	non tumor-specific	exon_skip	yes
UN_SLC39A7_LS0046	chr6:33203637|33203677:+	SLC39A7	solute carrier family 39 member 7	protein coding gene	no	.	30.651	2.868	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_CWC15_LS0005	chr11:94972193|94972886:-	CWC15	CWC15 spliceosome associated protein homolog	protein coding gene	no	.	3.530	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip	no
HMCN1_LS075	chr1:186114123|186114819:+	HMCN1	hemicentin 1	protein coding gene	no	ENST00000271588.8	3.926	2.070	2.171	0.347(3325)	0.536(376)	0.621(10789)	non tumor-specific	nAS	yes
RPS6KA2_LS004	chr6:166419958|166423256:-	RPS6KA2	ribosomal protein S6 kinase A2	protein coding gene	yes	ENST00000265678.8;ENST00000510118.5;ENST00000503859.5;ENST00000509742.1;ENST00000481261.6;ENST00000405189.7	27.363	37.186	32.334	0.934(8947)	0.987(693)	0.974(16922)	non tumor-specific	exon_skip	yes
UN_PCIF1_LS0059	chr20:45947741|45947779:-	PCIF1	PDX1 C-terminal inhibiting factor 1	protein coding gene	no	.	2.068	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
HLA-DQA1_LS004	chr6:32637540|32638912:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	ENST00000482745.5	0.006	0.005	0.718	0.047(453)	0.054(38)	0.05(866)	non tumor-specific	exon_skip	yes
ZNF436_LS003	chr1:23367168|23369366:-	ZNF436	zinc finger protein 436	protein coding gene	no	.;.	1.330	0.863	0.000	0.147(1412)	0.226(159)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
SLC26A7_LS028	chr8:91394039|91394218:+	SLC26A7	solute carrier family 26 member 7	protein coding gene	no	ENST00000309536.6	3.197	3.152	1.956	0.066(632)	0.268(188)	0.09(1558)	non tumor-specific	alt_3prime	yes
UN_EXOC3L4_LS0021	chr14:103107543|103107634:+	EXOC3L4	exocyst complex component 3 like 4	protein coding gene	no	.	9.134	3.122	0.000	0.003(25)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MLF1_LS020	chr3:158593426|158596862:+	MLF1	myeloid leukemia factor 1	protein coding gene	no	ENST00000619577.4;ENST00000477042.5;ENST00000471745.5;ENST00000478894.6;ENST00000466246.5;ENST00000392822.4	0.334	3.701	15.852	0.008(80)	0.031(22)	0.156(2708)	non tumor-specific	alt_5prime;exon_skip	yes
TNXA_LS005	chr6:32009872|32009965:-	TNXA	tenascin XA (pseudogene)	pseudogene	no	ENST00000507684.1	15.012	27.744	0.960	0.582(5574)	0.899(631)	0.337(5851)	non tumor-specific	nAS	yes
UN_SLC12A8_LS0032	chr3:125110372|125110412:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	.	23.490	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RPLP2_LS001	chr11:810039|810234:+	RPLP2	ribosomal protein lateral stalk subunit P2	protein coding gene	no	ENST00000321153.8	1265.228	735.656	3548.567	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LAT2_LS001	chr7:74199685|74209931:+	LAT2	solute carrier family 7 member 8	protein coding gene	yes	ENST00000465116.5	0.211	0.037	0.703	0.085(814)	0.074(52)	0.111(1922)	non tumor-specific	nAS	yes
CEBPZ_LS011	chr2:37216208|37216316:-	CEBPZ	CCAAT enhancer binding protein zeta	protein coding gene	no	ENST00000234170.9	89.173	50.971	43.495	0.996(9540)	0.997(700)	0.979(17011)	non tumor-specific	alt_3prime	yes
TRPM6_LS037	chr9:74842343|74855527:-	TRPM6	transient receptor potential cation channel subfamily M member 6	protein coding gene	no	ENST00000361255.7;ENST00000449912.6;ENST00000360774.5;ENST00000359047.2	2.562	1.957	0.894	0.025(238)	0.181(127)	0.296(5143)	non tumor-specific	nAS	yes
UN_LDOC1_LS0026	chrX:141176408|141176676:-	LDOC1	LDOC1 regulator of NFKB signaling	protein coding gene	no	.	6.758	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
CSMD2_LS011	chr1:33537609|33540525:-	CSMD2	CUB and Sushi multiple domains 2	protein coding gene	no	ENST00000373381.8;ENST00000373388.6;ENST00000619121.4;ENST00000241312.8	3.132	0.440	1.383	0.108(1039)	0.01(7)	0.406(7065)	non tumor-specific	nAS	yes
UN_MEGF6_LS0045	chr1:3505304|3505422:-	MEGF6	multiple EGF like domains 6	protein coding gene	no	.	5.396	0.690	0.000	0.007(65)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SCUBE1_LS001	chr22:43204149|43207534:-	SCUBE1	signal peptide, CUB domain and EGF like domain containing 1	protein coding gene	no	ENST00000360835.8	4.485	2.882	5.018	0.186(1778)	0.651(457)	0.751(13046)	non tumor-specific	alt_5prime;exon_skip	yes
ABCA9_LS008	chr17:68986324|68989027:-	ABCA9	ATP binding cassette subfamily A member 9	protein coding gene	no	ENST00000340001.8;ENST00000453985.6	3.459	4.129	16.830	0.219(2094)	0.671(471)	0.935(16258)	non tumor-specific	exon_skip	yes
AL078612.2_LS001	chr11:32132786|32137121:+	AL078612.2	-	lncRNA gene	no	ENST00000525133.1	1.676	0.000	2.076	0.008(77)	0(0)	0.012(210)	non tumor-specific	nAS	yes
EGFR_LS031	chr7:55198863|55200316:+	EGFR	epidermal growth factor receptor	protein coding gene	yes	ENST00000455089.5;ENST00000454757.6;ENST00000275493.6;ENST00000638463.1;ENST00000485503.1	35.704	27.189	18.397	0.887(8494)	0.983(690)	0.923(16035)	non tumor-specific	alt_5prime	yes
UN_DUSP23_LS0010	chr1:159781242|159781266:-	DUSP23	protein tyrosine phosphatase mitochondrial 1	protein coding gene	no	.	4.313	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012363.1_LS0007	chr2:120180241|120216340:-	AC012363.1	-	lncRNA gene	no	.	2.258	0.249	0.000	0.016(158)	0.004(3)	0(0)	non tumor-specific	nAS	no
POLK_LS011	chr5:75552591|75569340:+	POLK	terminal nucleotidyltransferase 4A	protein coding gene	no	ENST00000241436.8;ENST00000503479.6;ENST00000506928.5;ENST00000514296.5;ENST00000508867.5;ENST00000515295.5;ENST00000514141.5;ENST00000504026.5;ENST00000508526.5;ENST00000509126.2	8.064	6.190	10.504	0.874(8372)	0.964(677)	0.963(16738)	non tumor-specific	alt_3prime;exon_skip	yes
KLF4_LS006	chr9:107489050|107489168:-	KLF4	Kruppel like factor 4	protein coding gene	yes	ENST00000493306.1;ENST00000374672.4;ENST00000610832.1;ENST00000420475.1	20.266	47.718	39.175	0.91(8716)	0.98(688)	0.967(16801)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MRPS23_LS0012	chr17:57846221|57846313:-	MRPS23	mitochondrial ribosomal protein S23	protein coding gene	no	.	14.929	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZMYND11_LS014	chr10:236915|239438:+	ZMYND11	zinc finger MYND-type containing 11	protein coding gene	yes	ENST00000397959.7;ENST00000402736.5;ENST00000602682.5	0.442	0.569	1.657	0.541(5188)	0.755(530)	0.624(10847)	non tumor-specific	alt_3prime;exon_skip	yes
CAPN3_LS009	chr15:42394341|42396800:+	CAPN3	calpain 3	protein coding gene	no	ENST00000318023.11;ENST00000357568.7;ENST00000349748.7;ENST00000397163.7;ENST00000638141.1	2.938	1.714	17.603	0.574(5498)	0.711(499)	0.977(16988)	non tumor-specific	alt_5prime;exon_skip	yes
UN_INTS1_LS0071	chr7:1483853|1483951:-	INTS1	integrator complex subunit 1	protein coding gene	yes	.	2.937	0.677	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_CCDC8_LS0016	chr19:46411652|46411797:-	CCDC8	coiled-coil domain containing 8	protein coding gene	no	.	12.912	2.592	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
WISP1_LS005	chr8:133213120|133225390:+	WISP1	cellular communication network factor 4	protein coding gene	yes	.;.	2.191	0.002	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HIVEP1_LS0040	chr6:12164191|12164247:-	HIVEP1	HIVEP zinc finger 1	protein coding gene	yes	.	2.209	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DYTN_LS005	chr2:206693323|206694766:-	DYTN	dystrotelin	protein coding gene	no	ENST00000644951.1;ENST00000452335.2	5.126	0.000	0.848	0.015(142)	0(0)	0.059(1023)	non tumor-specific	alt_3prime	yes
MLF2_LS005	chr12:6750007|6750145:-	MLF2	myeloid leukemia factor 2	protein coding gene	no	ENST00000537126.5	95.861	69.976	0.763	0.936(8967)	0.923(648)	0.253(4402)	non tumor-specific	alt_5prime	yes
MAMDC4_LS002	chr9:136851939|136852379:+	MAMDC4	MAM domain containing 4	protein coding gene	no	ENST00000485732.5	1.503	0.430	6.268	0.105(1006)	0.098(69)	0.949(16504)	non tumor-specific	alt_5prime;intron_retention	yes
GCM2_LS001	chr6:10874933|10875891:-	GCM2	glial cells missing transcription factor 2	protein coding gene	no	ENST00000379491.4	1.554	0.000	0.750	0.001(9)	0(0)	0.006(112)	non tumor-specific	nAS	yes
SEC24D_LS010	chr4:118741037|118743988:-	SEC24D	SEC24 homolog D, COPII coat complex component	protein coding gene	no	ENST00000280551.10;ENST00000505134.5;ENST00000511481.5;ENST00000514561.5;ENST00000419654.6	43.114	26.613	28.216	0.968(9278)	0.994(698)	0.974(16930)	non tumor-specific	exon_skip	yes
UN_HLA-K_LS0018	chr6:29927501|29928439:-	HLA-K	major histocompatibility complex, class I, K (pseudogene)	pseudogene	no	.	0.483	0.019	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF334_LS0027	chr20:46512566|46513497:-	ZNF334	zinc finger protein 334	protein coding gene	no	.	0.471	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_RXRA_LS0080	chr9:134433457|134434102:+	RXRA	retinoid X receptor alpha	protein coding gene	no	.	3.149	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FBXL2_LS013	chr3:33297962|33300522:+	FBXL2	F-box and leucine rich repeat protein 2	protein coding gene	no	ENST00000483037.5	0.152	0.050	0.657	0.001(12)	0.004(3)	0.025(428)	non tumor-specific	exon_skip;mutex_exons	yes
ITPR3_LS014	chr6:33665213|33665835:+	ITPR3	inositol 1,4,5-trisphosphate receptor type 3	protein coding gene	no	ENST00000374316.9;ENST00000605930.2	30.651	19.418	13.068	0.836(8007)	0.879(617)	0.938(16309)	non tumor-specific	alt_3prime	yes
RUSC1_LS002	chr1:155323130|155324845:+	RUSC1	RUN and SH3 domain containing 1	protein coding gene	no	ENST00000368354.7;ENST00000368352.9;ENST00000467820.5	1.253	3.405	3.361	0.809(7750)	0.809(568)	0.823(14301)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_COL23A1_LS0033	chr5:178261748|178263208:-	COL23A1	collagen type XXIII alpha 1 chain	protein coding gene	no	.	3.763	0.943	0.000	0.03(283)	0.043(30)	0(0)	non tumor-specific	exon_skip	no
UN_FN1_LS0112	chr2:215371978|215372024:+	FN1	fibronectin 1	protein coding gene	no	.	44.571	8.738	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CLUHP3_LS0017	chr16:31706581|31706891:+	CLUHP3	clustered mitochondria homolog pseudogene 3	pseudogene	no	.	0.413	0.099	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
SNHG14_LS023	chr15:25055230|25056483:+	SNHG14	small nucleolar RNA host gene 14	lncRNA gene	no	ENST00000547292.1	0.808	0.428	1.137	0.104(1000)	0.142(100)	0.506(8797)	non tumor-specific	nAS	yes
UN_AC010422.8_LS0042	chr19:12670306|12670676:-	AC010422.8	-	protein coding gene	no	.	3.160	0.072	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ACTB_LS0376	chr7:5528636|5529563:+	ACTB	actin beta	protein coding gene	no	.	5.679	0.972	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MS4A6A_LS0013	chr11:60181741|60182497:-	MS4A6A	membrane spanning 4-domains A6A	protein coding gene	no	.	2.822	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
RBFOX1_LS013	chr16:6654650|7052057:+	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	ENST00000641259.1;ENST00000547605.5;ENST00000553186.5;ENST00000550418.5;ENST00000547372.5;ENST00000422070.8;ENST00000535565.6;ENST00000552089.5;ENST00000551752.5	2.486	3.748	6.452	0.068(652)	0.014(10)	0.219(3808)	non tumor-specific	exon_skip	yes
UN_SEMA3B_LS0002	chr3:50267769|50268193:+	SEMA3B	semaphorin 3B	protein coding gene	yes	.	2.099	1.155	0.000	0.004(40)	0.033(23)	0(0)	non tumor-specific	nAS	no
AL109615.3_LS006	chr6:44001116|44074497:-	AL109615.3	-	lncRNA gene	no	ENST00000422059.5	0.346	0.043	0.852	0.17(1627)	0.142(100)	0.04(692)	non tumor-specific	nAS	yes
LINC02516_LS001	chr4:124500994|124504250:-	LINC02516	long intergenic non-protein coding RNA 2516	lncRNA gene	no	ENST00000563724.1	1.538	0.000	0.742	0.002(22)	0(0)	0.167(2896)	non tumor-specific	nAS	yes
LINC01225_LS004	chr1:31503188|31504128:+	LINC01225	leucine decarboxylase 1, pseudogene	pseudogene	no	ENST00000562339.5;ENST00000563550.5	2.933	0.294	0.743	0.004(40)	0.009(6)	0.02(356)	non tumor-specific	nAS	yes
UN_SESN3_UP_LS0013	chr11:95328065|95328482:-	SESN3	sestrin 3	protein coding gene	no	.	2.245	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GAPDH_LS0198	chr12:6537912|6537940:-	GAPDH	glyceraldehyde-3-phosphate dehydrogenase	protein coding gene	no	.	1071.884	58.172	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PAXIP1_LS0006	chr7:154944620|154945008:+	PAXIP1	PAX interacting protein 1	protein coding gene	no	.	1.794	0.620	0.000	0.052(502)	0.1(70)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_SLC1A4_UP_LS0002	chr2:64867259|64882745:+	SLC1A4	solute carrier family 1 member 4	protein coding gene	no	.	2.918	0.172	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TMEM256-PLSCR3_LS0033	chr17:7393355|7393467:-	TMEM256-PLSCR3	TMEM256-PLSCR3 readthrough (NMD candidate)	protein coding gene	no	.	7.364	2.302	0.000	0.008(81)	0.01(7)	0(0)	non tumor-specific	nAS	no
LINC01018_LS005	chr5:6586027|6586228:+	LINC01018	long intergenic non-protein coding RNA 1018	lncRNA gene	no	ENST00000505626.5;ENST00000507582.1	4.452	6.079	1.666	0.295(2826)	0.588(413)	0.504(8765)	non tumor-specific	nAS	yes
ZNF141_LS006	chr4:344430|383095:+	ZNF141	zinc finger protein 141	protein coding gene	no	ENST00000505939.5	0.064	0.307	0.681	0.255(2446)	0.211(148)	0.12(2090)	non tumor-specific	exon_skip	yes
AC015468.4_LS002	chr8:20943252|20948699:+	AC015468.4	-	lncRNA gene	no	ENST00000523496.1	0.846	0.000	0.770	0.001(5)	0(0)	0.011(199)	non tumor-specific	nAS	yes
UN_AL645929.1_UP_LS0081	chr6:29889468|29944202:-	AL645929.1	-	pseudogene	no	.	45.634	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
MARCH3_LS004	chr5:126899266|126914930:-	MARCH3	membrane associated ring-CH-type finger 3	protein coding gene	no	ENST00000504239.1	0.372	0.055	0.872	0.311(2984)	0.231(162)	0.344(5977)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SEC14L1_LS0022	chr17:77147806|77190803:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	4.577	0.775	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
AC114689.3_LS001	chr18:67516749|67834419:+	AC114689.3	-	lncRNA gene	no	ENST00000583687.1	0.032	0.000	0.682	0(1)	0(0)	0.021(360)	non tumor-specific	nAS	yes
TACC2_LS011	chr10:122087959|122088478:+	TACC2	transforming acidic coiled-coil containing protein 2	protein coding gene	no	ENST00000369005.5;ENST00000515273.5;ENST00000515603.5;ENST00000334433.7;ENST00000453444.6	6.593	7.831	8.875	0.474(4543)	0.813(571)	0.789(13723)	non tumor-specific	alt_5prime;exon_skip	yes
BCAR3_LS020	chr1:93674941|93706092:-	BCAR3	BCAR3 adaptor protein, NSP family member	protein coding gene	no	ENST00000370244.5	1.320	0.989	1.013	0.29(2780)	0.472(331)	0.517(8994)	non tumor-specific	exon_skip	yes
UN_SNRPE_LS0008	chr1:203865118|203869868:+	SNRPE	small nuclear ribonucleoprotein polypeptide E	protein coding gene	no	.	5.852	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
BAP1_LS009	chr3:52404586|52405110:-	BAP1	ring finger protein 2	protein coding gene	yes	ENST00000460680.5;ENST00000296288.9;ENST00000490804.1	77.437	52.886	49.663	0.994(9520)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
FBXO42_LS009	chr1:16305919|16315169:-	FBXO42	F-box protein 42	protein coding gene	no	ENST00000375592.7;ENST00000478089.1	28.324	19.878	24.914	0.983(9422)	0.993(697)	0.979(17013)	non tumor-specific	exon_skip	yes
MAN1A1_LS005	chr6:119193892|119201254:-	MAN1A1	mannosidase alpha class 1A member 1	protein coding gene	no	ENST00000368468.3	46.624	79.319	29.217	0.936(8964)	0.993(697)	0.966(16798)	non tumor-specific	exon_skip	yes
UN_HNRNPH2_LS0004	chrX:101413216|101413253:+	HNRNPH2	heterogeneous nuclear ribonucleoprotein H2	protein coding gene	no	.	33.679	12.802	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TRAC_UP_LS0013	chr14:22482346|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	3.830	1.653	0.000	0.157(1506)	0.167(117)	0(0)	non tumor-specific	nAS	no
EFHC1_LS025	chr6:52454287|52469333:+	EFHC1	EF-hand domain containing 1	protein coding gene	no	ENST00000637874.1	1.901	0.301	1.506	0.006(59)	0.001(1)	0.675(11728)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATG2B_LS0002	chr14:96285985|96288588:-	ATG2B	autophagy related 2B	protein coding gene	no	.	1.086	0.164	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
DYNC2H1_LS056	chr11:103209960|103211789:+	DYNC2H1	dynein cytoplasmic 2 heavy chain 1	protein coding gene	no	ENST00000375735.6;ENST00000649997.1;ENST00000650373.1;ENST00000398093.7;ENST00000533027.1	2.552	2.735	3.088	0.61(5840)	0.781(548)	0.818(14221)	non tumor-specific	nAS	yes
CEP135_LS010	chr4:55971408|55974746:+	CEP135	centrosomal protein 135	protein coding gene	no	ENST00000257287.4;ENST00000506202.1	4.579	1.964	2.975	0.693(6644)	0.769(540)	0.865(15034)	non tumor-specific	exon_skip	yes
CRYBG1_LS003	chr6:106513039|106519131:+	CRYBG1	crystallin beta-gamma domain containing 1	protein coding gene	no	ENST00000633556.1;ENST00000369066.7	5.234	6.214	2.736	0.703(6735)	0.903(634)	0.649(11288)	non tumor-specific	nAS	yes
SORL1_LS054	chr11:121621238|121622162:+	SORL1	sortilin related receptor 1	protein coding gene	no	ENST00000260197.11;ENST00000525532.5;ENST00000532694.5;ENST00000534286.5;ENST00000527934.1;ENST00000524633.1	23.730	20.529	12.342	0.964(9237)	0.993(697)	0.935(16258)	non tumor-specific	nAS	yes
UN_AC010487.4_UP_LS0005	chr19:52884405|53134577:-	AC010487.4	-	pseudogene	no	.	3.941	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PLA1A_LS002	chr3:119597986|119608770:+	PLA1A	phospholipase A1 member A	protein coding gene	no	ENST00000488919.5	0.352	0.232	0.960	0.431(4129)	0.64(449)	0.267(4638)	non tumor-specific	alt_3prime;exon_skip	yes
NHS_LS005	chrX:17692468|17719344:+	NHS	NHS actin remodeling regulator	protein coding gene	no	ENST00000398097.7;ENST00000615422.1	1.491	0.872	1.476	0.317(3034)	0.45(316)	0.529(9191)	non tumor-specific	exon_skip	yes
C13orf46_LS004	chr13:113968514|113968595:-	C13orf46	chromosome 13 open reading frame 46	protein coding gene	no	ENST00000636427.2	2.361	0.257	0.799	0.002(15)	0.003(2)	0.239(4146)	non tumor-specific	nAS	yes
RASGRP1_LS029	chr15:38560005|38560130:-	RASGRP1	RAS guanyl releasing protein 1	protein coding gene	no	ENST00000558418.5	0.002	0.000	0.671	0.113(1085)	0.168(118)	0.002(34)	non tumor-specific	nAS	yes
SLC23A1_LS004	chr5:139378118|139378222:-	SLC23A1	solute carrier family 23 member 2	protein coding gene	no	ENST00000353963.7;ENST00000348729.7	10.277	24.790	1.744	0.279(2677)	0.48(337)	0.298(5188)	non tumor-specific	exon_skip	yes
UN_U2AF1L5_LS0007	chr21:6496080|6497180:-	U2AF1L5	U2 small nuclear RNA auxiliary factor 1 like 5	protein coding gene	no	.	4.664	0.054	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
RORA_LS016	chr15:60531851|60678657:-	RORA	RAR related orphan receptor A	protein coding gene	no	ENST00000335670.10;ENST00000560004.5;ENST00000557822.5	0.277	0.299	0.984	0.216(2071)	0.419(294)	0.478(8310)	non tumor-specific	exon_skip	yes
UN_PAXBP1_LS0023	chr21:32759269|32759541:-	PAXBP1	PAX3 and PAX7 binding protein 1	protein coding gene	no	.	3.437	1.120	0.000	0.006(53)	0.024(17)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_PHACTR4_LS0034	chr1:28433046|28438273:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	0.793	0.248	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
LRRC74A_LS008	chr14:76837971|76844423:+	LRRC74A	leucine rich repeat containing 74A	protein coding gene	no	ENST00000393774.7;ENST00000484640.5;ENST00000460005.1	3.043	0.000	0.688	0(1)	0(0)	0.019(336)	non tumor-specific	nAS	yes
UN_DHRS2_UP_LS0010	chr14:23627160|23627657:+	DHRS2	dehydrogenase/reductase 2	protein coding gene	no	.	0.791	0.139	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPS23P10_UP_LS0033	chr1:161544781|161626145:-	RPS23P10	ribosomal protein S23 pseudogene 10	pseudogene	no	.	12.356	5.792	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_ADGRL1_LS0069	chr19:14183326|14193736:+	ADGRL1	adhesion G protein-coupled receptor L1	protein coding gene	no	.	2.216	0.326	0.000	0.008(81)	0.007(5)	0(0)	non tumor-specific	nAS	no
DNAH6_LS002	chr2:84518051|84525565:+	DNAH6	dynein axonemal heavy chain 6	protein coding gene	no	ENST00000476689.5;ENST00000389394.7;ENST00000468661.1;ENST00000237449.10	4.118	3.156	1.064	0.264(2526)	0.434(305)	0.371(6456)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PIK3R6_LS0015	chr17:8827291|8828112:-	PIK3R6	phosphoinositide-3-kinase regulatory subunit 6	protein coding gene	no	.	1.946	0.239	0.000	0.013(124)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
THOC2_LS036	chrX:123624191|123624541:-	THOC2	THO complex 2	protein coding gene	no	ENST00000245838.12;ENST00000355725.8;ENST00000491737.5;ENST00000438358.1;ENST00000464161.1	25.236	12.591	24.761	0.977(9364)	0.983(690)	0.977(16984)	non tumor-specific	nAS	yes
PTHLH_LS006	chr12:27963770|27969394:-	PTHLH	parathyroid hormone like hormone	protein coding gene	no	ENST00000395872.5;ENST00000545234.5;ENST00000539239.5;ENST00000538310.1;ENST00000201015.8;ENST00000535992.5;ENST00000395868.7;ENST00000542963.1;ENST00000534890.1	16.929	4.996	3.697	0.838(8025)	0.826(580)	0.778(13522)	non tumor-specific	alt_3prime;alt_5prime	yes
HNRNPA2B1_LS030	chr7:26197732|26200572:-	HNRNPA2B1	heterogeneous nuclear ribonucleoprotein A2/B1	protein coding gene	no	ENST00000608362.2;ENST00000356674.7;ENST00000608362.2;ENST00000356674.7	945.264	474.730	428.922	0.962(9221)	0.966(678)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
AL096855.1_LS004	chr1:8429972|8434633:+	AL096855.1	-	lncRNA gene	no	ENST00000449895.5	0.813	0.349	0.670	0.008(76)	0.011(8)	0.092(1599)	non tumor-specific	nAS	yes
AC092573.2_LS001	chr2:173338633|173356167:-	AC092573.2	-	pseudogene	no	ENST00000437243.1	0.221	0.067	0.755	0.086(820)	0.044(31)	0.037(644)	non tumor-specific	nAS	yes
LCP1_LS025	chr13:46194105|46211732:-	LCP1	TOX high mobility group box family member 4	protein coding gene	no	.;.	0.674	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SERPINI2_LS0001	chr3:167442185|167443308:-	SERPINI2	serpin family I member 2	protein coding gene	yes	.	2.790	0.381	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_NAA35_LS0013	chr9:85976835|85977363:+	NAA35	N-alpha-acetyltransferase 35, NatC auxiliary subunit	protein coding gene	no	.	2.944	0.730	0.000	0.028(271)	0.014(10)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
FAM214A_LS003	chr15:52584944|52587151:-	FAM214A	family with sequence similarity 214 member A	protein coding gene	no	ENST00000261844.11;ENST00000546305.6;ENST00000619572.4;ENST00000399202.8;ENST00000570204.1	16.317	12.927	20.639	0.968(9278)	0.991(696)	0.977(16979)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MUC17_LS045	chr7:101040336|101041573:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.;.	8.535	3.650	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AATF_LS0022	chr17:37017255|37019005:+	AATF	apoptosis antagonizing transcription factor	protein coding gene	no	.	3.130	0.155	0.000	0.02(195)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
JAKMIP2_LS009	chr5:147629746|147631413:-	JAKMIP2	janus kinase and microtubule interacting protein 2	protein coding gene	no	ENST00000616793.4;ENST00000507386.5;ENST00000265272.9;ENST00000333010.6	11.452	3.375	2.716	0.266(2545)	0.244(171)	0.669(11635)	non tumor-specific	nAS	yes
UN_AL136295.5_LS0015	chr14:24155032|24155157:+	AL136295.5	-	protein coding gene	no	.	1.716	0.418	0.000	0.038(361)	0.034(24)	0(0)	non tumor-specific	nAS	no
GNB5_LS022	chr15:52154076|52179768:-	GNB5	G protein subunit beta 5	protein coding gene	no	ENST00000261837.11;ENST00000396335.8;ENST00000358784.11;ENST00000561313.5;ENST00000560075.1;ENST00000560116.1	17.676	17.675	12.492	0.967(9268)	0.989(694)	0.965(16771)	non tumor-specific	alt_5prime	yes
UN_STAG3_UP_LS0002	chr7:100124727|100148950:+	STAG3	stromal antigen 3	protein coding gene	no	.	2.299	0.478	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	nAS	no
PTPN14_LS015	chr1:214401772|214402883:-	PTPN14	protein tyrosine phosphatase non-receptor type 14	protein coding gene	no	ENST00000366956.9	7.203	6.338	5.098	0.698(6689)	0.803(564)	0.826(14363)	non tumor-specific	exon_skip	yes
VILL_LS008	chr3:37990829|37993587:+	VILL	villin like	protein coding gene	no	ENST00000416303.5;ENST00000416303.5;ENST00000416303.5	1.854	3.182	1.547	0.335(3207)	0.507(356)	0.139(2412)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC020915.5_LS0004	chr19:58230462|58237249:+	AC020915.5	-	protein coding gene	no	.	1.337	0.428	0.000	0.055(523)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_CAPN12_LS0049	chr19:38743473|38743519:+	CAPN12	calpain 12	protein coding gene	no	.	8.934	1.285	0.000	0.011(107)	0.007(5)	0(0)	non tumor-specific	nAS	no
SYT16_LS013	chr14:62084385|62100394:+	SYT16	synaptotagmin 16	protein coding gene	no	ENST00000568344.5;ENST00000555409.1;ENST00000430451.3	2.196	1.007	1.611	0.092(883)	0.077(54)	0.152(2650)	non tumor-specific	alt_3prime;exon_skip	yes
SYCP2L_LS029	chr6:10956242|10958784:+	SYCP2L	synaptonemal complex protein 2 like	protein coding gene	no	ENST00000341041.8;ENST00000283141.10;ENST00000543878.5	5.589	0.937	2.243	0.142(1356)	0.057(40)	0.781(13580)	non tumor-specific	exon_skip	yes
FAM110A_LS002	chr20:833951|844708:+	FAM110A	family with sequence similarity 110 member A	protein coding gene	no	ENST00000381941.7	7.049	3.184	4.163	0.922(8831)	0.946(664)	0.924(16060)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ACSS1_LS0016	chr20:25015230|25030759:-	ACSS1	acyl-CoA synthetase short chain family member 1	protein coding gene	no	.	3.501	0.514	0.000	0.053(508)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
UN_RNF215_LS0033	chr22:30387663|30388155:-	RNF215	ring finger protein 215	protein coding gene	no	.	2.699	0.167	0.000	0.024(232)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_TBC1D8_LS0039	chr2:101040385|101049339:-	TBC1D8	TBC1 domain family member 8	protein coding gene	no	.	0.755	0.101	0.000	0.004(42)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
VTI1A_LS004	chr10:112448489|112448882:+	VTI1A	vesicle transport through interaction with t-SNAREs 1A	protein coding gene	no	ENST00000483122.1	0.845	0.658	1.335	0.572(5479)	0.594(417)	0.614(10677)	non tumor-specific	exon_skip;intron_retention	yes
UN_NDRG1_LS0052	chr8:133237544|133238873:+	NDRG1	N-myc downstream regulated 1	protein coding gene	yes	.	2.413	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
MYO18A_LS039	chr17:29115099|29115351:-	MYO18A	myosin XVIIIA	protein coding gene	no	ENST00000527372.6;ENST00000533112.5;ENST00000531253.5;ENST00000628822.2;ENST00000530254.6	17.263	12.149	27.664	0.935(8954)	0.983(690)	0.978(17008)	non tumor-specific	exon_skip	yes
AC078883.1_LS002	chr2:172495516|172512334:-	AC078883.1	-	lncRNA gene	no	ENST00000442417.5	1.847	0.623	2.084	0.406(3892)	0.311(218)	0.822(14290)	non tumor-specific	nAS	yes
AC025569.1_LS006	chr12:70508001|70510212:+	AC025569.1	-	lncRNA gene	no	ENST00000548924.5;ENST00000549616.5;ENST00000549359.5	1.106	0.063	0.730	0.055(529)	0.004(3)	0.034(583)	non tumor-specific	nAS	yes
CLASP1_LS018	chr2:121401870|121402595:-	CLASP1	cytoplasmic linker associated protein 1	protein coding gene	no	ENST00000452274.6	0.722	0.264	0.846	0.102(979)	0.111(78)	0.262(4560)	non tumor-specific	exon_skip;intron_retention	yes
UN_CCDC114_LS0018	chr19:48319499|48320299:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	.	1.414	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
FRY_LS014	chr13:32124681|32124795:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5	3.739	2.588	2.511	0.369(3538)	0.624(438)	0.819(14234)	non tumor-specific	nAS	yes
UN_DPY19L2_LS0026	chr12:63616165|63617304:-	DPY19L2	dpy-19 like 2	protein coding gene	no	.	7.635	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1169P_UP_LS0001	chr15:41491807|41493058:-	RNU6-1169P	RNA, U6 small nuclear 1169, pseudogene	small non-coding RNA gene	no	.	1.084	0.101	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_GM2A_LS0066	chr5:151269016|151269079:-	GM2A	GM2 ganglioside activator	protein coding gene	no	.	2.667	0.196	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
CES3_LS016	chr16:66966345|66966725:+	CES3	carboxylesterase 3	protein coding gene	no	ENST00000303334.8;ENST00000394037.5;ENST00000570236.1	4.994	14.313	1.693	0.436(4173)	0.584(410)	0.573(9965)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_OR7E85P_UP_LS0004	chr4:9480098|9480234:+	OR7E85P	olfactory receptor family 7 subfamily E member 85 pseudogene	pseudogene	no	.	1.639	0.026	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
NEK4_LS005	chr3:52743461|52744239:-	NEK4	NIMA related kinase 4	protein coding gene	no	ENST00000233027.9;ENST00000535191.5;ENST00000383721.8;ENST00000461689.5;ENST00000493199.1	22.969	15.307	15.500	0.986(9451)	0.993(697)	0.977(16989)	non tumor-specific	exon_skip	yes
UN_ADGRA3_LS0028	chr4:22421617|22424191:-	ADGRA3	adhesion G protein-coupled receptor A3	protein coding gene	no	.	1.944	0.169	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
RBM22_LS004	chr5:150694240|150695506:-	RBM22	RNA binding motif protein 22	protein coding gene	no	ENST00000199814.8;ENST00000447771.6	70.065	39.766	25.152	0.991(9494)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ABTB2_LS0018	chr11:34197538|34356701:-	ABTB2	ankyrin repeat and BTB domain containing 2	protein coding gene	no	.	0.428	0.293	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
SNRNP27_LS003	chr2:69896548|69897377:+	SNRNP27	small nuclear ribonucleoprotein U4/U6.U5 subunit 27	protein coding gene	no	ENST00000244227.7;ENST00000409116.5;ENST00000450162.6;ENST00000488986.1	132.188	73.095	83.290	0.998(9559)	0.997(700)	0.979(17020)	non tumor-specific	nAS	yes
NT5C2_LS001	chr10:103089908|103090611:-	NT5C2	5'-nucleotidase, cytosolic II	protein coding gene	no	ENST00000404739.7;ENST00000343289.9;ENST00000369857.8	68.351	44.883	76.856	0.991(9497)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CAMK4_LS015	chr5:111449203|111473311:+	CAMK4	calcium/calmodulin dependent protein kinase IV	protein coding gene	no	ENST00000512453.5;ENST00000282356.8;ENST00000515231.5;ENST00000514007.5;ENST00000502916.5	4.131	2.146	1.611	0.374(3582)	0.396(278)	0.483(8390)	non tumor-specific	nAS	yes
UN_PFKP_LS0015	chr10:3101439|3101464:-	PFKP	phosphofructokinase, platelet	protein coding gene	no	.	3.195	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC084752.1_UP_LS0004	chr4:162741779|162746234:+	AC084752.1	-	pseudogene	no	.	18.141	0.144	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	nAS	no
HTATIP2_LS012	chr11:20382239|20382980:+	HTATIP2	HIV-1 Tat interactive protein 2	protein coding gene	yes	ENST00000421577.6;ENST00000443524.6;ENST00000419348.6;ENST00000451739.6;ENST00000531058.1;ENST00000533914.1	80.228	49.289	50.527	0.974(9336)	0.973(683)	0.979(17021)	non tumor-specific	alt_3prime	yes
TTN_LS087	chr2:178607685|178607785:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5	10.311	8.175	2.601	0.003(29)	0.016(11)	0.188(3270)	non tumor-specific	intron_retention	yes
RPH3AL_LS031	chr17:327579|386197:-	RPH3AL	rabphilin 3A like (without C2 domains)	protein coding gene	no	ENST00000573780.5	0.412	0.376	1.302	0.757(7257)	0.922(647)	0.645(11220)	non tumor-specific	exon_skip	yes
UN_HMHB1_LS0003	chr5:143813189|143820480:+	HMHB1	histocompatibility minor HB-1	protein coding gene	no	.	3.209	2.199	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC8B_LS002	chr1:89525022|89568247:+	LRRC8B	leucine rich repeat containing 8 VRAC subunit B	protein coding gene	no	ENST00000639264.1;ENST00000330947.6	0.846	0.622	0.838	0.503(4822)	0.623(437)	0.386(6714)	non tumor-specific	exon_skip	yes
SLC4A3_LS018	chr2:219630352|219631968:+	SLC4A3	solute carrier family 4 member 3	protein coding gene	no	ENST00000358055.7;ENST00000373760.6;ENST00000273063.10;ENST00000425141.5;ENST00000317151.7	6.309	5.192	6.418	0.598(5729)	0.611(429)	0.882(15323)	non tumor-specific	exon_skip	yes
UN_ABR_LS0178	chr17:1152833|1155706:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	1.723	0.042	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
DZIP3_LS009	chr3:108611329|108616541:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	ENST00000361582.7;ENST00000495008.5;ENST00000486815.5;ENST00000479138.5;ENST00000463306.1	6.466	6.083	4.587	0.744(7133)	0.869(610)	0.907(15766)	non tumor-specific	alt_3prime	yes
UN_METTL8_LS0016	chr2:171360513|171433883:-	METTL8	methyltransferase like 8	protein coding gene	no	.	1.522	0.141	0.000	0.02(193)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
UN_CABIN1_LS0098	chr22:24134415|24160330:+	CABIN1	calcineurin binding protein 1	protein coding gene	yes	.	1.125	0.214	0.000	0.007(66)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RNF126_LS0016	chr19:649748|649912:-	RNF126	ring finger protein 126	protein coding gene	no	.	4.790	2.341	0.000	0.056(541)	0.061(43)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
ARHGEF19_LS005	chr1:16201861|16202416:-	ARHGEF19	Rho guanine nucleotide exchange factor 19	protein coding gene	no	ENST00000478117.5;ENST00000270747.7;ENST00000478117.5;ENST00000270747.7	43.751	20.882	13.773	0.914(8755)	0.923(648)	0.967(16810)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC139834.1_UP_LS0006	chr5:71002143|71123617:-	AC139834.1	-	lncRNA gene	no	.	25.063	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
GSTP1_LS012	chr11:67584772|67585138:+	GSTP1	glutathione S-transferase pi 1	protein coding gene	yes	ENST00000398606.8;ENST00000398603.5;ENST00000642444.1;ENST00000646888.1;ENST00000398606.8;ENST00000398603.5;ENST00000642444.1;ENST00000646888.1	2581.463	1216.264	876.196	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC090001.1_LS002	chr12:95833084|95858754:-	AC090001.1	-	lncRNA gene	no	ENST00000553194.1	0.110	0.124	0.855	0.016(153)	0.057(40)	0.022(386)	non tumor-specific	nAS	yes
GHDC_LS002	chr17:42189921|42190185:-	GHDC	GH3 domain containing	protein coding gene	no	ENST00000301671.12;ENST00000414034.7;ENST00000587427.5;ENST00000428494.6	77.705	49.446	31.105	0.959(9184)	0.962(675)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CST3_LS0125	chr20:23637750|23637845:-	CST3	cystatin C	protein coding gene	no	.	95.085	3.281	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
PLAUR_LS014	chr19:43661442|43670066:-	PLAUR	plasminogen activator, urokinase receptor	protein coding gene	no	ENST00000597107.1	0.448	0.125	0.627	0.292(2802)	0.191(134)	0.003(47)	non tumor-specific	mutex_exons	yes
UN_SREBF2_LS0038	chr22:41885011|41886000:+	SREBF2	sterol regulatory element binding transcription factor 2	protein coding gene	no	.	4.037	0.562	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CLDN7_LS0017	chr17:7262296|7262359:+	CLDN7	claudin 7	protein coding gene	no	.	3.479	0.376	0.000	0.008(79)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF428_UP_LS0002	chr19:43627790|43652225:-	ZNF428	zinc finger protein 428	protein coding gene	no	.	4.512	0.250	0.000	0.023(216)	0.019(13)	0(0)	non tumor-specific	nAS	no
PIP4P2_LS001	chr8:90995820|90996654:-	PIP4P2	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2	protein coding gene	no	ENST00000285419.7;ENST00000520709.5;ENST00000518359.5;ENST00000520014.1;ENST00000518869.1	15.593	9.565	28.075	0.947(9069)	0.989(694)	0.979(17012)	non tumor-specific	nAS	yes
UN_COG3_LS0016	chr13:45492250|45493421:+	COG3	component of oligomeric golgi complex 3	protein coding gene	no	.	7.813	5.551	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC01547_LS009	chr21:44937682|44939593:-	LINC01547	long intergenic non-protein coding RNA 1547	lncRNA gene	no	ENST00000330551.3	0.941	0.382	0.680	0.115(1104)	0.093(65)	0.054(933)	non tumor-specific	alt_3prime;exon_skip	yes
IMPAD1_LS001	chr8:56964064|56966191:-	IMPAD1	3'(2'), 5'-bisphosphate nucleotidase 2	protein coding gene	no	ENST00000262644.8;ENST00000520392.1	51.923	35.025	37.027	0.944(9047)	0.943(662)	0.979(17012)	non tumor-specific	exon_skip	yes
UN_WDR72_LS0046	chr15:53702354|53705006:-	WDR72	WD repeat domain 72	protein coding gene	no	.	2.183	1.561	0.000	0.009(88)	0.016(11)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FRG1GP_UP_LS0017	chr22:11630645|11630969:+	FRG1GP	FSHD region gene 1 family member G, pseudogene	pseudogene	no	.	4.440	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXLNGY_LS0025	chrY:19593593|19597591:+	TXLNGY	taxilin gamma pseudogene, Y-linked	pseudogene	no	.	2.336	0.206	0.000	0.011(101)	0.004(3)	0(0)	non tumor-specific	nAS	no
EHBP1_LS014	chr2:62831158|62858406:+	EHBP1	EH domain binding protein 1	protein coding gene	no	ENST00000449820.5;ENST00000263991.9	0.190	1.298	1.995	0.133(1270)	0.125(88)	0.266(4628)	non tumor-specific	exon_skip	yes
UN_AC244669.2_LS0028	chr1:120261247|120267774:-	AC244669.2	-	pseudogene	no	.	0.433	0.117	0.000	0.003(25)	0.01(7)	0(0)	non tumor-specific	nAS	no
ACAP2_LS003	chr3:195285857|195289121:-	ACAP2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein coding gene	no	ENST00000326793.10;ENST00000618471.4;ENST00000466876.1	26.200	16.191	11.382	0.98(9392)	0.989(694)	0.973(16908)	non tumor-specific	exon_skip	yes
UN_CLDN9_UP_LS0004	chr16:3004879|3006220:+	CLDN9	claudin 9	protein coding gene	no	.	3.000	1.900	0.000	0.418(4006)	0.47(330)	0(0)	non tumor-specific	nAS	no
TP53TG3_LS001	chr16:32674564|32674777:-	TP53TG3	TP53 target 3	protein coding gene	no	ENST00000565622.5;ENST00000563102.1;ENST00000563658.5;ENST00000568854.1;ENST00000562021.1	0.140	0.020	0.623	0.327(3137)	0.316(222)	0.002(39)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_NPFFR2_UP_LS0012	chr4:71603208|71635491:+	NPFFR2	neuropeptide FF receptor 2	protein coding gene	no	.	3.118	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC008667.1_LS0005	chr5:139710933|139711540:-	AC008667.1	-	lncRNA gene	no	.	2.248	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ABTB1_LS0016	chr3:127680173|127680269:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	.	4.408	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_SS18L1_LS0011	chr20:62150851|62154281:+	SS18L1	SS18L1 subunit of BAF chromatin remodeling complex	protein coding gene	no	.	1.079	0.158	0.000	0.009(84)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
IWS1_LS031	chr2:127506719|127523676:-	IWS1	interacts with SUPT6H, CTD assembly factor 1	protein coding gene	no	ENST00000436740.1	1.005	0.004	0.582	0.001(9)	0.003(2)	0.006(108)	non tumor-specific	exon_skip	yes
CLEC4M_LS003	chr19:7763312|7765638:+	CLEC4M	C-type lectin domain family 4 member M	protein coding gene	no	ENST00000601089.1	0.062	0.019	0.939	0.02(193)	0.098(69)	0.044(762)	non tumor-specific	exon_skip	yes
FKBP5_LS004	chr6:35587117|35591130:-	FKBP5	FKBP prolyl isomerase 5	protein coding gene	no	ENST00000539068.5;ENST00000536438.5;ENST00000357266.8	61.783	54.709	107.507	0.959(9186)	0.993(697)	0.978(16997)	non tumor-specific	alt_5prime;exon_skip	yes
LNPK_LS002	chr2:175930199|175937344:-	LNPK	lunapark, ER junction formation factor	protein coding gene	no	ENST00000272748.8;ENST00000544803.5;ENST00000409660.5;ENST00000479012.1;ENST00000431754.1	21.505	11.933	14.517	0.917(8782)	0.923(648)	0.976(16965)	non tumor-specific	exon_skip	yes
PLBD1-AS1_LS001	chr12:14567806|14568019:+	PLBD1-AS1	PLBD1 antisense RNA 1	lncRNA gene	no	ENST00000545424.5	0.138	0.136	0.670	0.114(1096)	0.188(132)	0.088(1524)	non tumor-specific	nAS	yes
UN_FAM114A1_LS0020	chr4:38922893|38926851:+	FAM114A1	family with sequence similarity 114 member A1	protein coding gene	no	.	3.952	0.330	0.000	0.01(94)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SLC7A8_LS0052	chr14:23126893|23127128:+	SLC7A8	solute carrier family 7 member 8	protein coding gene	no	.	3.005	5.282	0.000	0.003(24)	0.004(3)	0(0)	non tumor-specific	nAS	no
AP1B1_LS021	chr22:29351266|29351705:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	ENST00000432560.6;ENST00000357586.6;ENST00000405198.5;ENST00000317368.11;ENST00000402502.5;ENST00000415447.5;ENST00000421126.5	120.947	83.176	61.393	0.99(9482)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime	yes
UN_RDM1P1_UP_LS0005	chr17:45585819|45586086:-	RDM1P1	RDM1 pseudogene 1	pseudogene	no	.	0.736	0.062	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	nAS	no
MYT1L_LS009	chr2:1809167|1839149:-	MYT1L	myelin transcription factor 1 like	protein coding gene	no	ENST00000647755.1;ENST00000647738.1;ENST00000644820.1;ENST00000648627.1;ENST00000407844.6;ENST00000399161.7;ENST00000648339.1;ENST00000648643.1;ENST00000649840.1;ENST00000648928.1;ENST00000648465.1;ENST00000648318.1;ENST00000647618.1;ENST00000650399.1;ENST00000650485.1;ENST00000648913.1;ENST00000648478.1;ENST00000649092.1;ENST00000650560.1;ENST00000648299.1;ENST00000648933.1;ENST00000648753.1;ENST00000647687.1;ENST00000648931.1;ENST00000649207.1;ENST00000647694.1;ENST00000649663.1;ENST00000428368.7;ENST00000648316.1;ENST00000648665.1;ENST00000399157.7;ENST00000648885.1;ENST00000648943.1;ENST00000650589.1	4.011	3.880	14.744	0.065(623)	0.007(5)	0.206(3576)	non tumor-specific	nAS	yes
CASP14_LS005	chr19:15055274|15055430:+	CASP14	caspase 14	protein coding gene	no	ENST00000427043.3;ENST00000598738.1	9.264	1.447	1.056	0.164(1575)	0.138(97)	0.254(4418)	non tumor-specific	alt_3prime	yes
UN_HLA-DPB1_LS0028	chr6:33084955|33084998:-	HLA-DPB1	major histocompatibility complex, class II, DP beta 1	protein coding gene	no	.	21.541	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RNF126_LS005	chr19:648975|649679:-	RNF126	ring finger protein 126	protein coding gene	no	ENST00000605891.5;ENST00000292363.9;ENST00000590885.6;ENST00000589762.5;ENST00000605891.5;ENST00000292363.9;ENST00000590885.6;ENST00000589762.5	112.196	56.439	56.264	0.996(9542)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ATP8A2_LS031	chr13:25769229|25774849:+	ATP8A2	ATPase phospholipid transporting 8A2	protein coding gene	no	ENST00000381655.6;ENST00000281620.10;ENST00000255283.9;ENST00000491840.1	6.064	3.117	2.417	0.129(1235)	0.067(47)	0.295(5124)	non tumor-specific	nAS	yes
MFRP_LS004	chr11:119341772|119342596:-	MFRP	membrane frizzled-related protein	protein coding gene	no	ENST00000360167.4	0.423	0.000	0.830	0.001(5)	0(0)	0(5)	non tumor-specific	nAS	yes
MTHFD1_LS001	chr14:64388468|64389001:+	MTHFD1	methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1	protein coding gene	no	ENST00000554739.5;ENST00000554768.5	0.002	0.001	0.856	0.015(144)	0.016(11)	0.111(1932)	non tumor-specific	exon_skip	yes
UN_MTND4P1_UP_LS0012	chr13:84242097|84308809:+	MTND4P1	MT-ND4 pseudogene 1	pseudogene	no	.	1.718	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.4_UP_LS0040	chr21:8259219|8259814:-	FP671120.4	-	lncRNA gene	no	.	39.851	2.445	0.000	0.024(231)	0.019(13)	0(0)	non tumor-specific	nAS	no
SPATA21_LS015	chr1:16410043|16421509:-	SPATA21	spermatogenesis associated 21	protein coding gene	no	ENST00000335496.5	2.309	0.249	0.775	0.004(42)	0.001(1)	0.039(685)	non tumor-specific	exon_skip	yes
UN_MUC3A_LS0141	chr7:100958300|100958841:+	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	4.560	2.583	0.000	0.025(235)	0.02(14)	0(0)	non tumor-specific	nAS	no
UN_TAF1C_LS0005	chr16:84179294|84179391:+	TAF1C	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein coding gene	no	.	1.794	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
CAMKK1_LS013	chr17:3882370|3882528:-	CAMKK1	calcium/calmodulin dependent protein kinase kinase 1	protein coding gene	no	ENST00000158166.5	0.816	0.415	1.905	0.377(3612)	0.436(306)	0.763(13269)	non tumor-specific	exon_skip;intron_retention;mutex_exons	yes
UN_LRP4_LS0024	chr11:46869135|46871525:-	LRP4	LDL receptor related protein 4	protein coding gene	no	.	3.233	0.197	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_PLA2G4B_LS0017	chr15:41843811|41844438:+	PLA2G4B	phospholipase A2 group IVB	protein coding gene	no	.	1.294	0.136	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF462_LS0041	chr9:106974273|107003294:+	ZNF462	zinc finger protein 462	protein coding gene	no	.	0.144	0.029	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
LRRK2_LS009	chr12:40240617|40243550:+	LRRK2	leucine rich repeat kinase 2	protein coding gene	no	ENST00000343742.6;ENST00000298910.11;ENST00000644108.1	6.823	8.081	3.493	0.364(3492)	0.715(502)	0.865(15034)	non tumor-specific	exon_skip	yes
LINC-PINT_LS001	chr7:130882138|130884317:-	LINC-PINT	long intergenic non-protein coding RNA, p53 induced transcript	lncRNA gene	yes	ENST00000447307.5	0.337	0.110	0.699	0.043(412)	0.036(25)	0.057(986)	non tumor-specific	nAS	yes
UN_RBM17P3_UP_LS0006	chr9:41787250|41790130:+	RBM17P3	RNA binding motif protein 17 pseudogene 3	pseudogene	no	.	1.576	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PROM2_LS0075	chr2:95289600|95289788:-	PROM2	prominin 2	protein coding gene	no	.	2.005	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZC3H15_LS014	chr2:186502552|186504032:+	ZC3H15	zinc finger CCCH-type containing 15	protein coding gene	no	ENST00000468120.5;ENST00000496289.1	4.130	2.695	5.455	0.232(2221)	0.251(176)	0.951(16522)	non tumor-specific	alt_5prime;exon_skip	yes
CCDC60_LS006	chr12:119472164|119479094:+	CCDC60	coiled-coil domain containing 60	protein coding gene	no	ENST00000327554.2;ENST00000546345.5	3.858	3.552	1.385	0.08(766)	0.199(140)	0.121(2100)	non tumor-specific	nAS	yes
PROC_LS018	chr2:127423408|127428357:+	PROC	protein C, inactivator of coagulation factors Va and VIIIa	protein coding gene	no	ENST00000402125.2	0.729	0.267	0.786	0.273(2619)	0.202(142)	0.06(1042)	non tumor-specific	exon_skip	yes
TMEM9B_LS005	chr11:8962183|8962695:-	TMEM9B	TMEM9 domain family member B	protein coding gene	no	ENST00000530136.1	0.675	0.072	0.684	0.012(118)	0.014(10)	0.06(1042)	non tumor-specific	exon_skip	yes
UN_ZMIZ1_LS0066	chr10:79294603|79296471:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	.	2.602	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EAF2_LS009	chr3:121854823|121857011:+	EAF2	ELL associated factor 2	protein coding gene	yes	ENST00000273668.6;ENST00000451944.2;ENST00000490477.1	18.081	10.075	4.010	0.964(9239)	0.974(684)	0.929(16156)	non tumor-specific	exon_skip	yes
UN_AC246787.2_UP_LS0041	chr14:105587686|105707888:+	AC246787.2	-	lncRNA gene	no	.	17.483	29.644	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
CSF3_LS015	chr17:40016340|40016485:+	CSF3	colony stimulating factor 3	protein coding gene	yes	ENST00000394149.7;ENST00000225474.6;ENST00000579852.1;ENST00000331769.6	2.883	3.644	2.778	0.299(2869)	0.472(331)	0.573(9952)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC004947.2_UP_LS0004	chr7:26494888|26495019:+	AC004947.2	-	lncRNA gene	no	.	3.515	0.810	0.000	0.071(676)	0.091(64)	0(0)	non tumor-specific	nAS	no
ZNF526_LS001	chr19:42220387|42224215:+	ZNF526	zinc finger protein 526	protein coding gene	no	ENST00000301215.7	7.052	3.586	4.465	0.947(9076)	0.962(675)	0.944(16407)	non tumor-specific	alt_5prime;exon_skip	yes
NOL11_LS014	chr17:67734439|67735900:+	NOL11	nucleolar protein 11	protein coding gene	no	ENST00000253247.8;ENST00000581375.5	50.551	24.660	33.162	0.986(9445)	0.996(699)	0.978(17002)	non tumor-specific	exon_skip	yes
UN_AC097634.4_LS0039	chr3:71130584|71198202:-	AC097634.4	-	protein coding gene	no	.	2.451	0.082	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
RCC1_LS040	chr1:28535380|28535610:+	RCC1	regulator of chromosome condensation 1	protein coding gene	no	ENST00000429051.1	0.052	0.048	0.645	0.094(905)	0.026(18)	0.074(1283)	non tumor-specific	exon_skip	yes
ACTR3B_LS001	chr7:152759926|152783187:+	ACTR3B	actin related protein 3B	protein coding gene	no	ENST00000377776.7;ENST00000256001.12	2.065	1.881	2.125	0.87(8334)	0.846(594)	0.849(14756)	non tumor-specific	alt_5prime;exon_skip	yes
STAU2_LS014	chr8:73603863|73613744:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000522695.5;ENST00000524300.5;ENST00000523558.5;ENST00000521210.5;ENST00000355780.9;ENST00000519961.5;ENST00000521727.5;ENST00000521451.5;ENST00000522509.5;ENST00000517542.5;ENST00000518981.5;ENST00000518767.5	34.098	26.050	18.521	0.978(9373)	0.991(696)	0.978(16998)	non tumor-specific	exon_skip	yes
MBOAT1_LS017	chr6:20151262|20152624:-	MBOAT1	membrane bound O-acyltransferase domain containing 1	protein coding gene	no	ENST00000324607.7	14.854	8.985	8.737	0.834(7987)	0.942(661)	0.904(15705)	non tumor-specific	exon_skip	yes
GBP2_LS006	chr1:89112684|89112942:-	GBP2	guanylate binding protein 2	protein coding gene	no	ENST00000493802.5	0.326	0.144	0.678	0.114(1096)	0.094(66)	0.107(1853)	non tumor-specific	nAS	yes
PTDSS2_LS012	chr11:479152|480125:+	PTDSS2	phosphatidylserine synthase 2	protein coding gene	no	ENST00000530087.1	0.353	0.158	0.894	0.518(4966)	0.494(347)	0.421(7322)	non tumor-specific	exon_skip;mutex_exons	yes
UN_BCL2L2-PABPN1_LS0086	chr14:23321703|23321743:+	BCL2L2-PABPN1	BCL2L2-PABPN1 readthrough	protein coding gene	no	.	2.754	0.630	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL358216.1_LS001	chr10:628897|629859:+	AL358216.1	-	lncRNA gene	no	ENST00000451601.1	0.452	0.176	1.374	0.072(686)	0.046(32)	0.22(3816)	non tumor-specific	nAS	yes
TRDN_LS027	chr6:123382147|123388522:-	TRDN	triadin	protein coding gene	no	ENST00000334268.8	8.037	8.215	2.179	0.036(345)	0.101(71)	0.542(9425)	non tumor-specific	exon_skip	yes
C5_LS040	chr9:121034894|121037881:-	C5	complement C5	protein coding gene	no	ENST00000223642.2	5.794	8.111	2.184	0.344(3297)	0.661(464)	0.766(13308)	non tumor-specific	nAS	yes
UN_ELF4_LS0056	chrX:130071228|130071336:-	ELF4	E74 like ETS transcription factor 4	protein coding gene	yes	.	2.667	0.269	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PRSS23_LS010	chr11:86823593|86951216:+	PRSS23	serine protease 23	protein coding gene	no	ENST00000533902.2;ENST00000533902.2	0.025	0.022	0.701	0.124(1192)	0.152(107)	0.062(1072)	non tumor-specific	alt_3prime;exon_skip	yes
DPY19L4_LS018	chr8:94768553|94770452:+	DPY19L4	dpy-19 like 4	protein coding gene	no	ENST00000414645.6;ENST00000523020.1	14.555	10.604	8.511	0.92(8817)	0.976(685)	0.947(16468)	non tumor-specific	exon_skip	yes
UN_CSTF2_LS0029	chrX:100837992|100838239:+	CSTF2	cleavage stimulation factor subunit 2	protein coding gene	no	.	3.217	0.950	0.000	0.003(27)	0.01(7)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
CR848007.1_LS001	chr9:42901355|42903343:+	CR848007.1	-	pseudogene	no	ENST00000442354.1	0.393	0.000	0.670	0(1)	0(0)	0.009(159)	non tumor-specific	nAS	yes
UN_FBP1_UP_LS0001	chr9:94690885|94691220:-	FBP1	fructose-bisphosphatase 1	protein coding gene	yes	.	2.987	1.264	0.000	0.005(49)	0.085(60)	0(0)	non tumor-specific	nAS	no
ABCC10_LS028	chr6:43444938|43445125:+	ABCC10	ATP binding cassette subfamily C member 10	protein coding gene	no	ENST00000372530.8;ENST00000244533.7;ENST00000463024.1	16.621	7.814	14.446	0.978(9366)	0.939(659)	0.978(16993)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SFTPD_LS006	chr10:79942504|79942763:-	SFTPD	surfactant protein D	protein coding gene	no	ENST00000372292.7;ENST00000444384.3	14.543	166.320	2.414	0.524(5022)	0.738(518)	0.72(12511)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
VPS9D1_LS012	chr16:89712093|89712460:-	VPS9D1	VPS9 domain containing 1	protein coding gene	no	ENST00000568691.5	0.058	0.040	0.811	0.176(1689)	0.178(125)	0.223(3878)	non tumor-specific	alt_3prime;intron_retention	yes
CASZ1_LS011	chr1:10650755|10650941:-	CASZ1	castor zinc finger 1	protein coding gene	no	ENST00000377022.7;ENST00000344008.5;ENST00000490176.1	7.728	9.551	13.493	0.927(8880)	0.925(649)	0.875(15204)	non tumor-specific	exon_skip	yes
SSC5D_LS007	chr19:55491080|55493595:+	SSC5D	scavenger receptor cysteine rich family member with 5 domains	protein coding gene	no	ENST00000587166.5;ENST00000389623.10	4.616	3.298	2.738	0.46(4403)	0.605(425)	0.712(12383)	non tumor-specific	intron_retention	yes
UN_DHX38_LS0006	chr16:72096325|72097792:-	DHX38	DEAH-box helicase 38	protein coding gene	no	.	4.246	0.071	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
PTGES3L-AARSD1_LS025	chr17:42980275|42980366:-	PTGES3L-AARSD1	PTGES3L-AARSD1 readthrough	protein coding gene	no	ENST00000409399.5	0.046	0.044	0.822	0.071(681)	0.067(47)	0.303(5271)	non tumor-specific	intron_retention	yes
UN_NPTXR_LS0018	chr22:38822833|38822979:-	NPTXR	neuronal pentraxin receptor	protein coding gene	no	.	5.819	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL024498.2_LS0069	chr6:10801961|10803720:-	AL024498.2	-	protein coding gene	no	.	2.054	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
TULP1_LS013	chr6:35511010|35511648:-	TULP1	TUB like protein 1	protein coding gene	no	ENST00000229771.10;ENST00000614066.4;ENST00000448446.2	0.984	0.023	0.728	0.023(219)	0.02(14)	0.144(2511)	non tumor-specific	exon_skip	yes
TOR1AIP1_LS015	chr1:179901388|179903966:+	TOR1AIP1	torsin 1A interacting protein 1	protein coding gene	no	ENST00000528443.6;ENST00000271583.7;ENST00000606911.6;ENST00000435319.8;ENST00000531630.6;ENST00000527391.5;ENST00000529091.5;ENST00000474875.5;ENST00000531726.5;ENST00000524653.1	54.511	50.488	32.172	0.976(9348)	0.989(694)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_FBRSL1_LS0064	chr12:132527988|132543175:+	FBRSL1	fibrosin like 1	protein coding gene	no	.	4.838	0.844	0.000	0.066(632)	0.033(23)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
GDA_LS002	chr9:72149682|72195500:+	GDA	solute carrier family 25 member 16	protein coding gene	no	ENST00000238018.8;ENST00000358399.7;ENST00000475764.5	5.240	9.180	2.131	0.361(3454)	0.405(284)	0.254(4414)	non tumor-specific	alt_3prime	yes
UN_BX323014.1_UP_LS0009	chr1:232292746|232293011:-	BX323014.1	-	pseudogene	no	.	1.870	0.365	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC013468.1_UP_LS0001	chr2:189767388|189771708:-	AC013468.1	-	lncRNA gene	no	.	3.348	0.500	0.000	0.008(80)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
C2CD3_LS031	chr11:74103625|74106371:-	C2CD3	C2 domain containing 3 centriole elongation regulator	protein coding gene	no	ENST00000334126.11;ENST00000313663.11;ENST00000537285.1	6.308	3.675	3.740	0.729(6984)	0.836(587)	0.923(16052)	non tumor-specific	alt_3prime;exon_skip	yes
UN_KCTD1_LS0002	chr18:26455901|26457621:-	KCTD1	potassium channel tetramerization domain containing 1	protein coding gene	no	.	1.439	0.142	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AP001462.1_UP_LS0002	chr11:64778104|64778947:+	AP001462.1	-	lncRNA gene	no	.	1.399	0.348	0.000	0.012(112)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_FOXN3_LS0036	chr14:89326594|89350672:-	FOXN3	forkhead box N3	protein coding gene	no	.	3.728	0.765	0.000	0.018(170)	0.006(4)	0(0)	non tumor-specific	nAS	no
MELTF_LS006	chr3:197008965|197009618:-	MELTF	melanotransferrin	protein coding gene	no	ENST00000296350.9	26.354	9.362	4.251	0.793(7593)	0.759(533)	0.865(15037)	non tumor-specific	alt_3prime	yes
UN_CCDC40_LS0015	chr17:80058146|80058494:+	CCDC40	coiled-coil domain containing 40	protein coding gene	no	.	2.669	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip	no
RSU1P1_LS001	chr10:42725977|42734708:+	RSU1P1	Ras suppressor protein 1 pseudogene 1	pseudogene	no	ENST00000453416.1	0.182	0.059	0.602	0.005(50)	0.003(2)	0.015(268)	non tumor-specific	nAS	yes
PCNX2_LS039	chr1:233218184|233236845:-	PCNX2	pecanex 2	protein coding gene	no	ENST00000475463.6;ENST00000430153.5	0.358	0.153	0.822	0.23(2206)	0.226(159)	0.321(5574)	non tumor-specific	exon_skip	yes
NAT10_LS018	chr11:34122592|34123762:+	NAT10	N-acetyltransferase 10	protein coding gene	no	ENST00000257829.7;ENST00000531159.6;ENST00000615292.1	36.087	15.918	15.596	0.972(9314)	0.99(695)	0.975(16941)	non tumor-specific	nAS	yes
UN_TNS1_LS0248	chr2:217901823|217905296:-	TNS1	tensin 1	protein coding gene	no	.	7.402	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_TUBB_LS0260	chr6:30724393|30724415:-	TUBB	tubulin beta 2A class IIa	protein coding gene	no	.	43.744	0.539	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	nAS	no
ERMN_LS002	chr2:157321791|157324147:-	ERMN	ermin	protein coding gene	no	ENST00000409216.5	0.150	0.047	1.213	0.018(173)	0.004(3)	0.037(650)	non tumor-specific	exon_skip	yes
LTBP4_LS002	chr19:40594553|40599197:+	LTBP4	latent transforming growth factor beta binding protein 4	protein coding gene	no	ENST00000599016.5	0.098	0.073	2.459	0.049(465)	0.017(12)	0.103(1787)	non tumor-specific	nAS	yes
SCNN1A_LS009	chr12:6353887|6354438:-	SCNN1A	sodium channel epithelial 1 subunit alpha	protein coding gene	no	ENST00000366131.6	0.044	0.016	0.711	0.335(3207)	0.541(380)	0.09(1560)	non tumor-specific	nAS	yes
ADAMTS14_LS016	chr10:70743681|70745226:+	ADAMTS14	ADAM metallopeptidase with thrombospondin type 1 motif 14	protein coding gene	no	.;.;.	1.003	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TTC7A_LS0016	chr2:46957007|46957744:+	TTC7A	tetratricopeptide repeat domain 7A	protein coding gene	no	.	3.136	0.258	0.000	0.01(94)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_PRICKLE2_UP_LS0013	chr3:64470697|64494239:-	PRICKLE2	prickle planar cell polarity protein 2	protein coding gene	no	.	3.620	1.821	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	nAS	no
WDFY4_LS054	chr10:48957282|48959722:+	WDFY4	WDFY family member 4	protein coding gene	no	ENST00000325239.11;ENST00000465910.5	10.021	3.947	2.170	0.678(6500)	0.679(477)	0.747(12990)	non tumor-specific	nAS	yes
ST14_LS012	chr11:130196448|130196570:+	ST14	ST14 transmembrane serine protease matriptase	protein coding gene	no	ENST00000278742.5;ENST00000524718.5;ENST00000530376.1	174.929	132.123	7.503	0.947(9071)	0.979(687)	0.792(13765)	non tumor-specific	nAS	yes
GALC_LS004	chr14:87934878|87939905:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000261304.6;ENST00000393569.6;ENST00000393568.8;ENST00000555179.1	21.003	17.631	17.772	0.956(9162)	0.984(691)	0.978(17005)	non tumor-specific	alt_3prime;exon_skip	yes
ITGB5_LS012	chr3:124796817|124817621:-	ITGB5	integrin subunit beta 5	protein coding gene	no	ENST00000481591.5	3.559	2.106	3.236	0.828(7930)	0.853(599)	0.819(14243)	non tumor-specific	exon_skip	yes
NEK6_LS015	chr9:124292088|124301936:+	NEK6	NIMA related kinase 6	protein coding gene	no	ENST00000546191.5;ENST00000422297.5	0.082	0.187	0.803	0.618(5922)	0.61(428)	0.155(2686)	non tumor-specific	exon_skip;mutex_exons	yes
WBP2_LS001	chr17:75846034|75846336:-	WBP2	WW domain binding protein 2	protein coding gene	no	ENST00000591831.5	0.298	0.196	7.557	0.808(7746)	0.873(613)	0.97(16866)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_MIR6859-1_UP_LS0009	chr1:18267|188756:-	MIR6859-1	microRNA 6859-1	small non-coding RNA gene	no	.	3.502	0.286	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL121944.1_LS0003	chr6:28078972|28080320:-	AL121944.1	-	lncRNA gene	no	.	1.746	1.137	0.000	0.018(170)	0.028(20)	0(0)	non tumor-specific	nAS	no
UN_AHDC1_LS0044	chr1:27548292|27548396:+	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	0.819	0.985	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CAD_LS0062	chr2:27242775|27242875:+	CAD	DNA fragmentation factor subunit beta	protein coding gene	no	.	10.323	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SEC16A_LS026	chr9:136451408|136453428:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	ENST00000313050.11;ENST00000290037.10;ENST00000277537.10;ENST00000453963.5;ENST00000371706.7;ENST00000431893.3	52.915	32.888	31.715	0.989(9477)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
ADAM9_LS021	chr8:39077411|39090047:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000468065.5	0.264	0.251	0.742	0.151(1442)	0.117(82)	0.211(3675)	non tumor-specific	exon_skip	yes
SCUBE2_LS034	chr11:9053212|9053637:-	SCUBE2	signal peptide, CUB domain and EGF like domain containing 2	protein coding gene	yes	ENST00000519788.6	0.615	0.441	0.776	0.221(2118)	0.372(261)	0.163(2831)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SLC2A13_LS0010	chr12:39830228|39854904:-	SLC2A13	solute carrier family 2 member 13	protein coding gene	no	.	1.241	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC2A9_LS0088	chr4:9988144|9993255:+	SLC2A9	solute carrier family 2 member 9	protein coding gene	no	.	2.194	0.391	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC007785.1_LS0016	chr19:46180689|46180801:-	AC007785.1	-	lncRNA gene	no	.	5.950	0.503	0.000	0.048(461)	0.01(7)	0(0)	non tumor-specific	nAS	no
GSDME_LS015	chr7:24744754|24757707:-	GSDME	gasdermin E	protein coding gene	no	ENST00000419307.6	0.174	0.103	0.740	0.292(2798)	0.279(196)	0.151(2620)	non tumor-specific	exon_skip	yes
UN_AC023421.2_UP_LS0023	chr18:45800890|45838975:-	AC023421.2	-	lncRNA gene	no	.	2.683	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	nAS	no
PLEKHG4B_LS025	chr5:182463|186410:+	PLEKHG4B	pleckstrin homology and RhoGEF domain containing G4B	protein coding gene	no	.;.	5.949	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ABR_LS0188	chr17:1153485|1153603:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	2.366	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF106_LS021	chr15:42444262|42444827:-	ZNF106	zinc finger protein 106	protein coding gene	no	ENST00000263805.8;ENST00000565380.5;ENST00000565500.5;ENST00000565611.5;ENST00000564754.6;ENST00000567772.2	15.134	12.642	12.749	0.901(8629)	0.949(666)	0.973(16913)	non tumor-specific	exon_skip	yes
UN_LRRC36_LS0023	chr16:67365221|67365304:+	LRRC36	leucine rich repeat containing 36	protein coding gene	no	.	0.961	1.345	0.000	0.002(17)	0.07(49)	0(0)	non tumor-specific	intron_retention	no
RILPL1_LS004	chr12:123472682|123484180:-	RILPL1	Rab interacting lysosomal protein like 1	protein coding gene	no	ENST00000376874.8;ENST00000340724.6;ENST00000544468.1;ENST00000376874.8;ENST00000340724.6;ENST00000544468.1	13.963	10.140	32.778	0.921(8826)	0.962(675)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FMO4_LS0015	chr1:171332908|171334599:+	FMO4	flavin containing dimethylaniline monoxygenase 4	protein coding gene	no	.	3.155	0.276	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC02109_LS002	chr5:29145874|29146271:+	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	ENST00000602801.1	5.208	0.000	0.688	0(1)	0(0)	0.005(91)	non tumor-specific	nAS	yes
CDK5RAP2_LS054	chr9:120545790|120550792:-	CDK5RAP2	CDK5 regulatory subunit associated protein 2	protein coding gene	no	ENST00000360822.7;ENST00000349780.8;ENST00000360190.8;ENST00000473282.6;ENST00000480112.5;ENST00000481266.1	15.519	10.221	12.431	0.898(8602)	0.973(683)	0.973(16904)	non tumor-specific	exon_skip	yes
UN_HDGF_LS0033	chr1:156742361|156742484:+	HDGF	heparin binding growth factor	protein coding gene	no	.	5.213	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
HEPHL1_LS018	chr11:94111065|94111537:+	HEPHL1	hephaestin like 1	protein coding gene	no	ENST00000315765.9	8.979	3.073	1.294	0.115(1098)	0.068(48)	0.113(1960)	non tumor-specific	nAS	yes
AL357673.1_LS007	chr1:54144813|54172603:-	AL357673.1	-	protein coding gene	no	ENST00000525949.1	0.081	0.036	0.726	0.001(12)	0.001(1)	0.022(385)	non tumor-specific	nAS	yes
FOCAD_LS017	chr9:20778768|20781727:+	FOCAD	focadhesin	protein coding gene	no	ENST00000380249.5;ENST00000338382.10	7.945	7.138	6.451	0.8(7664)	0.9(632)	0.947(16454)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC138696.1_LS0002	chr8:143247193|143249690:+	AC138696.1	-	protein coding gene	no	.	0.500	0.833	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MAPKAPK5_LS0009	chr12:111850171|111865250:+	MAPKAPK5	MAPK activated protein kinase 5	protein coding gene	no	.	0.825	0.391	0.000	0.018(176)	0.04(28)	0(0)	non tumor-specific	exon_skip	no
TRMT9B_LS004	chr8:12951381|12952063:+	TRMT9B	tRNA methyltransferase 9B (putative)	protein coding gene	no	ENST00000528335.5;ENST00000400069.7	0.279	0.157	0.795	0.071(678)	0.172(121)	0.113(1957)	non tumor-specific	exon_skip	yes
BCAS2_LS007	chr1:114581391|114581499:-	BCAS2	BCAS2 pre-mRNA processing factor	protein coding gene	no	ENST00000369541.3;ENST00000485021.1	64.268	43.546	43.035	0.961(9212)	0.969(680)	0.979(17019)	non tumor-specific	alt_5prime	yes
NBPF12_LS008	chr1:146951489|146959859:+	NBPF12	NBPF member 12	protein coding gene	yes	ENST00000617844.4;ENST00000611443.4	2.867	1.779	0.730	0.763(7306)	0.863(606)	0.237(4115)	non tumor-specific	exon_skip	yes
UN_TPO_LS0053	chr2:1542588|1542875:+	TPO	thyroid peroxidase	protein coding gene	no	.	167.292	294.309	0.000	0.005(52)	0.019(13)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MPPE1_LS0013	chr18:11902358|11905347:-	MPPE1	metallophosphoesterase 1	protein coding gene	no	.	0.777	0.179	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
DCAF11_LS025	chr14:24115726|24116917:+	DCAF11	DDB1 and CUL4 associated factor 11	protein coding gene	no	ENST00000561056.5;ENST00000557809.5;ENST00000557802.5;ENST00000559796.5;ENST00000560457.5;ENST00000326009.9;ENST00000557888.5;ENST00000561056.5;ENST00000557809.5;ENST00000557802.5;ENST00000559796.5;ENST00000560457.5;ENST00000326009.9;ENST00000557888.5	0.570	0.966	4.585	0.956(9160)	0.989(694)	0.954(16575)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TYW5_LS0021	chr2:199954769|199955179:+	TYW5	tRNA-yW synthesizing protein 5	protein coding gene	no	.	1.183	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
SND1_LS004	chr7:127686762|127694828:+	SND1	staphylococcal nuclease and tudor domain containing 1	protein coding gene	no	ENST00000354725.7;ENST00000461056.5;ENST00000468621.5	95.875	55.767	58.104	0.991(9496)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_TRRAP_LS0010	chr7:98906255|98910056:+	TRRAP	transformation/transcription domain associated protein	protein coding gene	no	.	1.016	0.223	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TRPV1_LS019	chr17:3591353|3592067:-	TRPV1	transient receptor potential cation channel subfamily V member 1	protein coding gene	no	ENST00000399759.7;ENST00000571088.5;ENST00000572705.1;ENST00000650505.1;ENST00000399756.8;ENST00000425167.6;ENST00000574085.5;ENST00000576351.5;ENST00000310522.5	3.980	2.486	6.878	0.805(7715)	0.852(598)	0.955(16600)	non tumor-specific	nAS	yes
IGF2BP1_LS006	chr17:49026517|49031910:+	IGF2BP1	insulin like growth factor 2 mRNA binding protein 1	protein coding gene	yes	ENST00000290341.7;ENST00000431824.2;ENST00000515586.5;ENST00000499130.6;ENST00000505562.1	6.081	1.117	1.942	0.248(2380)	0.155(109)	0.062(1081)	non tumor-specific	exon_skip	yes
PGAP2_LS027	chr11:3811424|3824270:+	PGAP2	post-GPI attachment to proteins 2	protein coding gene	no	ENST00000477358.6;ENST00000485602.5;ENST00000475884.5	0.062	0.068	0.900	0.586(5615)	0.593(416)	0.403(6998)	non tumor-specific	exon_skip	yes
PTPN4_LS038	chr2:119967972|119976957:+	PTPN4	protein tyrosine phosphatase non-receptor type 4	protein coding gene	no	ENST00000441089.1	0.530	0.195	0.659	0.025(243)	0.033(23)	0.016(285)	non tumor-specific	alt_3prime	yes
XPO5_LS002	chr6:43524635|43524831:-	XPO5	exportin 5	protein coding gene	yes	ENST00000265351.11;ENST00000455854.2;ENST00000488195.6;ENST00000486936.2;ENST00000455285.2	45.674	13.976	29.609	0.997(9553)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC073365.1_LS0020	chr3:191559754|191566751:+	AC073365.1	-	lncRNA gene	no	.	1.491	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
ATP13A2_LS026	chr1:16996496|16997020:-	ATP13A2	ATPase cation transporting 13A2	protein coding gene	no	ENST00000326735.12;ENST00000341676.9;ENST00000452699.5;ENST00000463860.5	23.422	15.716	20.324	0.984(9424)	0.972(682)	0.978(17003)	non tumor-specific	alt_3prime;exon_skip	yes
UN_FCRL5_LS0009	chr1:157534347|157534614:-	FCRL5	Fc receptor like 5	protein coding gene	no	.	0.535	0.180	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AGRN_LS0180	chr1:1051560|1051596:-	AGRN	agrin	protein coding gene	yes	.	10.297	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SMN2_LS0005	chr5:70070751|70076529:+	SMN2	survival of motor neuron 2, centromeric	protein coding gene	no	.	25.239	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC079594.2_LS0007	chr3:160258635|160268415:-	AC079594.2	-	protein coding gene	no	.	7.093	0.197	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
GTPBP8_LS004	chr3:112991412|112993027:+	GTPBP8	GTP binding protein 8 (putative)	protein coding gene	no	ENST00000619116.4	0.078	0.000	0.539	0.001(14)	0(0)	0.005(83)	non tumor-specific	nAS	yes
ATAD2_LS019	chr8:123349444|123356389:-	ATAD2	ATPase family AAA domain containing 2	protein coding gene	no	ENST00000517666.5;ENST00000287394.9;ENST00000519124.5;ENST00000521496.5	21.641	4.534	5.053	0.911(8729)	0.923(648)	0.937(16288)	non tumor-specific	alt_3prime	yes
SGIP1_LS003	chr1:66534368|66590470:+	SGIP1	SH3GL interacting endocytic adaptor 1	protein coding gene	no	ENST00000493564.1	0.635	0.002	0.790	0.042(401)	0.091(64)	0.196(3410)	non tumor-specific	exon_skip;mutex_exons	yes
UN_POLR2E_LS0054	chr19:1088720|1089514:-	POLR2E	RNA polymerase II, I and III subunit E	protein coding gene	no	.	32.060	2.778	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
TIAM2_LS020	chr6:155148334|155164415:+	TIAM2	TIAM Rac1 associated GEF 2	protein coding gene	no	ENST00000461783.7;ENST00000528535.5;ENST00000360366.8;ENST00000529824.6	2.520	1.645	1.379	0.223(2135)	0.252(177)	0.566(9844)	non tumor-specific	nAS	yes
UN_FIRRE_LS0019	chrX:131695913|131709498:-	FIRRE	firre intergenic repeating RNA element	lncRNA gene	no	.	3.539	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CDKN1A_LS0078	chr6:36686642|36687079:-	CDKN1A	cyclin dependent kinase inhibitor 1A	protein coding gene	yes	.	3.226	0.701	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF5_LS0009	chr7:22145218|22146897:-	RAPGEF5	Rap guanine nucleotide exchange factor 5	protein coding gene	no	.	2.214	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
RAB17_LS008	chr2:237576690|237577257:-	RAB17	RAB17, member RAS oncogene family	protein coding gene	no	ENST00000430445.1	0.244	0.076	0.849	0.453(4344)	0.635(446)	0.169(2944)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AC018467.1_LS003	chr2:23020392|23025821:-	AC018467.1	-	lncRNA gene	no	ENST00000421581.1	1.091	0.685	0.965	0.022(207)	0.078(55)	0.025(429)	non tumor-specific	nAS	yes
SYCP2_LS059	chr20:59919182|59919493:-	SYCP2	synaptonemal complex protein 2	protein coding gene	no	ENST00000357552.7;ENST00000371001.6;ENST00000446834.5	2.727	0.340	1.079	0.175(1678)	0.135(95)	0.517(8992)	non tumor-specific	intron_retention	yes
COL18A1_LS021	chr21:45482025|45482795:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	136.904	124.569	99.988	0.984(9423)	0.997(700)	0.978(16997)	non tumor-specific	nAS	yes
HERC1_LS015	chr15:63632811|63633848:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6;ENST00000561436.1;ENST00000561359.1	21.718	18.903	40.057	0.973(9318)	0.987(693)	0.979(17018)	non tumor-specific	exon_skip	yes
SLC5A6_LS036	chr2:27211533|27212832:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	ENST00000432106.5	0.034	0.060	0.675	0.708(6785)	0.701(492)	0.047(821)	non tumor-specific	exon_skip	yes
UN_COL11A1_LS0015	chr1:102962760|102964742:-	COL11A1	collagen type XI alpha 1 chain	protein coding gene	no	.	1.322	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM56-RWDD3_LS0023	chr1:95165198|95174066:-	TMEM56-RWDD3	TLCD4-RWDD3 readthrough	protein coding gene	no	.	3.115	2.013	0.000	0.008(76)	0.037(26)	0(0)	non tumor-specific	nAS	no
UN_CNGB3_LS0015	chr8:86579252|86579459:-	CNGB3	cyclic nucleotide gated channel subunit beta 3	protein coding gene	no	.	1.039	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0025	chr6:112532175|112593102:+	AL360085.1	-	pseudogene	no	.	2.211	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
SFSWAP_LS005	chr12:131714193|131714822:+	SFSWAP	splicing factor SWAP	protein coding gene	no	ENST00000540469.5;ENST00000538548.5	4.055	2.751	11.772	0.921(8820)	0.926(650)	0.975(16945)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AL122018.1_UP_LS0006	chr1:236097282|236097312:+	AL122018.1	-	pseudogene	no	.	4.438	0.670	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DNAJC7_LS0026	chr17:42003557|42017040:-	DNAJC7	DnaJ heat shock protein family (Hsp40) member C7	protein coding gene	no	.	0.926	1.068	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_AL162376.1_UP_LS0012	chr13:73254253|73378772:+	AL162376.1	-	lncRNA gene	no	.	2.163	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PDE4D_LS0003	chr5:58975877|58976350:-	PDE4D	phosphodiesterase 4D	protein coding gene	no	.	2.449	0.342	0.000	0.006(60)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_COL8A1_LS0087	chr3:99795588|99795616:+	COL8A1	collagen type VIII alpha 1 chain	protein coding gene	no	.	14.483	0.135	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_UBB_LS0170	chr17:16382117|16382295:-	UBB	ubiquitin B	protein coding gene	no	.	55.091	28.835	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
SPTA1_LS052	chr1:158685347|158686494:-	SPTA1	spectrin alpha, erythrocytic 1	protein coding gene	no	ENST00000368147.8;ENST00000643759.1	4.030	0.008	0.872	0.011(102)	0.001(1)	0.047(809)	non tumor-specific	nAS	yes
UN_LYST_LS0010	chr1:235709204|235712057:-	LYST	lysosomal trafficking regulator	protein coding gene	no	.	3.648	0.546	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PRPF19_LS009	chr11:60899304|60900582:-	PRPF19	pre-mRNA processing factor 19	protein coding gene	no	ENST00000227524.8	197.162	98.905	125.014	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
PAGE2B_LS007	chrX:55077524|55078782:+	PAGE2B	PAGE family member 2B	protein coding gene	no	ENST00000374974.7;ENST00000374971.1	11.833	0.923	0.804	0.09(865)	0.01(7)	0.184(3202)	non tumor-specific	nAS	yes
ERCC4_LS005	chr16:13927655|13927973:+	ERCC4	ERCC excision repair 4, endonuclease catalytic subunit	protein coding gene	no	ENST00000574781.1	0.277	0.156	0.745	0.145(1392)	0.118(83)	0.114(1989)	non tumor-specific	intron_retention	yes
GRK2_LS024	chr11:67283228|67283707:+	GRK2	G protein-coupled receptor kinase 2	protein coding gene	no	ENST00000308595.9;ENST00000416281.6;ENST00000526572.5;ENST00000527176.5;ENST00000531390.1;ENST00000532611.1	98.428	53.019	106.497	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
CHN2_LS003	chr7:29146960|29148502:+	CHN2	chimerin 2	protein coding gene	no	ENST00000461824.1	0.150	0.144	0.856	0.27(2588)	0.346(243)	0.225(3919)	non tumor-specific	nAS	yes
UN_CCDC92_LS0036	chr12:123937369|123937427:+	CCDC92	coiled-coil domain containing 92	protein coding gene	no	.	1.024	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC35E2A_LS0035	chr1:1734834|1737649:-	SLC35E2A	solute carrier family 35 member E2A	protein coding gene	no	.	2.389	0.951	0.000	0.005(46)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CLDND1_LS0015	chr3:98516742|98517052:-	CLDND1	claudin domain containing 1	protein coding gene	no	.	6.834	1.429	0.000	0.007(63)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_MED6P1_UP_LS0008	chr10:88183204|88274933:-	MED6P1	mediator complex subunit 6 pseudogene 1	pseudogene	no	.	3.890	0.818	0.000	0.002(16)	0.006(4)	0(0)	non tumor-specific	nAS	no
SFTPB_LS030	chr2:85668251|85668674:-	SFTPB	surfactant protein B	protein coding gene	no	ENST00000393822.7;ENST00000409383.5	0.959	0.284	1.231	0.107(1022)	0.212(149)	0.03(528)	non tumor-specific	nAS	yes
UN_HNRNPA3P1_LS0001	chr10:43789574|43789601:-	HNRNPA3P1	heterogeneous nuclear ribonucleoprotein A3 pseudogene 1	pseudogene	no	.	2.956	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ADGRF5_LS0014	chr6:46869092|46869247:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	.	5.874	9.768	0.000	0.485(4648)	0.664(466)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_XIST_LS0107	chrX:73845713|73846006:+	XIST	X inactive specific transcript	lncRNA gene	yes	.	8.986	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_OR7E117P_UP_LS0002	chr11:3604658|3605763:-	OR7E117P	olfactory receptor family 7 subfamily E member 117 pseudogene	pseudogene	no	.	2.046	0.301	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC092329.3_LS0026	chr19:23260112|23260864:-	AC092329.3	-	protein coding gene	no	.	1.169	0.420	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
CHST9_LS006	chr18:27142905|27185136:-	CHST9	carbohydrate sulfotransferase 9	protein coding gene	no	ENST00000618847.4;ENST00000580774.2	4.097	2.948	1.533	0.368(3522)	0.651(457)	0.38(6600)	non tumor-specific	exon_skip	yes
UN_TAF15_LS0193	chr17:35844650|35844678:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	72.536	15.236	0.000	0.018(168)	0.014(10)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_C11orf58_LS0007	chr11:16738841|16743584:+	C11orf58	chromosome 11 open reading frame 58	protein coding gene	no	.	1.812	0.158	0.000	0.015(140)	0.016(11)	0(0)	non tumor-specific	exon_skip	no
GRK6_LS003	chr5:177426619|177430872:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000511244.5	0.189	0.094	0.699	0.398(3814)	0.37(260)	0.196(3399)	non tumor-specific	nAS	yes
MUC4_LS336	chr3:195785017|195788522:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.;.	1.017	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PCAT1_LS006	chr8:126589290|126666545:+	PCAT1	prostate cancer associated transcript 1	lncRNA gene	yes	ENST00000520512.1	1.598	0.000	0.633	0(1)	0(0)	0.008(139)	non tumor-specific	nAS	yes
UN_MIDN_UP_LS0001	chr19:1245714|1246401:+	MIDN	midnolin	protein coding gene	no	.	1.593	0.232	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
COG2_LS025	chr1:230679052|230683574:+	COG2	component of oligomeric golgi complex 2	protein coding gene	no	ENST00000366669.8;ENST00000468893.6;ENST00000366668.7;ENST00000534989.1;ENST00000366669.8;ENST00000468893.6;ENST00000366668.7;ENST00000534989.1	27.928	17.516	18.074	0.987(9453)	0.991(696)	0.977(16989)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM10_LS005	chr15:58610517|58610999:-	ADAM10	ADAM metallopeptidase domain 10	protein coding gene	no	ENST00000260408.7;ENST00000396136.6;ENST00000470269.5	38.450	24.743	26.722	0.99(9485)	0.996(699)	0.979(17013)	non tumor-specific	exon_skip;intron_retention	yes
MUC19_LS133	chr12:40537715|40537854:+	MUC19	mucin 19, oligomeric	protein coding gene	no	ENST00000454784.9;ENST00000424466.6	2.256	0.156	0.811	0.005(44)	0.003(2)	0.048(833)	non tumor-specific	alt_3prime	yes
PCYT1B_LS002	chrX:24562505|24575130:-	PCYT1B	phosphate cytidylyltransferase 1, choline, beta	protein coding gene	no	ENST00000379145.5;ENST00000356768.8;ENST00000379144.6;ENST00000496020.1	5.187	2.201	2.568	0.265(2535)	0.283(199)	0.552(9591)	non tumor-specific	alt_3prime	yes
UN_PITPNM3_LS0011	chr17:6463639|6463732:-	PITPNM3	PITPNM family member 3	protein coding gene	no	.	1.810	1.192	0.000	0.007(68)	0.011(8)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_TNFRSF4_UP_LS0002	chr1:1214184|1216723:-	TNFRSF4	TNF receptor superfamily member 4	protein coding gene	no	.	0.763	0.378	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
INF2_LS010	chr14:104708732|104709281:+	INF2	inverted formin 2	protein coding gene	no	ENST00000330634.11;ENST00000392634.8;ENST00000252527.8;ENST00000617571.4;ENST00000474229.1	73.894	49.410	84.443	0.994(9519)	0.997(700)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NT5E_LS0011	chr6:85494979|85495012:-	NT5E	5'-nucleotidase ecto	protein coding gene	no	.	5.871	0.615	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AGPS_LS0015	chr2:177441040|177442407:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	.	11.328	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
NME2_LS009	chr17:51170049|51171487:+	NME2	NME/NM23 nucleoside diphosphate kinase 2	protein coding gene	no	ENST00000514264.6;ENST00000513177.5;ENST00000512737.5;ENST00000503064.5;ENST00000393190.4;ENST00000570801.1;ENST00000573262.1	1450.034	553.069	960.895	0.994(9524)	0.994(698)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_OSMR_LS0014	chr5:38886190|38903904:+	OSMR	oncostatin M receptor	protein coding gene	no	.	2.903	0.938	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FAM86HP_UP_LS0003	chr3:130143767|130144326:-	FAM86HP	family with sequence similarity 86 member H, pseudogene	pseudogene	no	.	2.278	0.210	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	nAS	no
SGCB_LS005	chr4:52029863|52031865:-	SGCB	sarcoglycan beta	protein coding gene	no	ENST00000506357.5	0.103	0.082	0.794	0.312(2991)	0.303(213)	0.336(5834)	non tumor-specific	alt_5prime;exon_skip	yes
HAVCR1_LS026	chr5:157058076|157058921:-	HAVCR1	hepatitis A virus cellular receptor 1	protein coding gene	no	ENST00000522693.5;ENST00000522693.5	1.289	0.561	0.832	0.049(474)	0.064(45)	0.002(41)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LSM4_LS004	chr19:18309861|18310110:-	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	ENST00000600289.6	0.586	4.100	2.812	0.844(8085)	0.809(568)	0.906(15740)	non tumor-specific	alt_5prime;exon_skip	yes
THADA_LS046	chr2:43571862|43572814:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405975.6;ENST00000405006.8;ENST00000398653.5;ENST00000408045.7;ENST00000402796.5;ENST00000402360.6;ENST00000404790.5;ENST00000474159.6;ENST00000403856.1	12.490	7.278	9.186	0.905(8674)	0.959(673)	0.964(16762)	non tumor-specific	exon_skip	yes
UN_TDRP_LS0004	chr8:494597|499781:-	TDRP	testis development related protein	protein coding gene	no	.	1.772	0.069	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATP5IF1_LS0009	chr1:28236430|28236648:-	ATP5IF1	ATP synthase inhibitory factor subunit 1	protein coding gene	no	.	9.184	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLDN4_LS0175	chr7:73831808|73832313:-	CLDN4	claudin 4	protein coding gene	no	.	0.697	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUBAL3_UP_LS0001	chr10:5431548|5460500:-	TUBAL3	tubulin alpha like 3	protein coding gene	no	.	3.443	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RPS27L_LS004	chr15:63156521|63156787:-	RPS27L	ribosomal protein S27 like	protein coding gene	no	ENST00000455271.5;ENST00000635699.1	0.121	0.229	1.967	0.776(7432)	0.825(579)	0.768(13353)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_RPS24_UP_LS0001	chr10:77880998|77976156:+	RPS24	ribosomal protein S24	protein coding gene	no	.	1.556	0.150	0.000	0.009(84)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_C8orf37_LS0015	chr8:95268049|95269035:-	C8orf37	chromosome 8 open reading frame 37	protein coding gene	no	.	0.785	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
C16orf97_LS002	chr16:52005634|52058368:-	C16orf97	chromosome 16 open reading frame 97	lncRNA gene	no	ENST00000568524.5	3.758	0.000	0.727	0.003(24)	0(0)	0.002(41)	non tumor-specific	nAS	yes
UN_ANKRD36_LS0012	chr2:97143086|97144518:+	ANKRD36	ankyrin repeat domain 36	protein coding gene	no	.	25.681	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
DGKD_LS041	chr2:233467203|233469371:+	DGKD	diacylglycerol kinase delta	protein coding gene	no	.;.;.	3.512	7.597	0.000	0.206(1976)	0.275(193)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02565_UP_LS0003	chr18:57173618|57174997:-	LINC02565	long intergenic non-protein coding RNA 2565	lncRNA gene	no	.	0.932	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
PPFIA3_LS001	chr19:49119722|49127859:+	PPFIA3	PTPRF interacting protein alpha 3	protein coding gene	no	ENST00000334186.8;ENST00000602655.5	0.540	0.331	2.911	0.109(1040)	0.041(29)	0.407(7074)	non tumor-specific	nAS	yes
UN_AC069368.1_LS0061	chr15:64895004|64921921:+	AC069368.1	-	protein coding gene	no	.	1.464	0.244	0.000	0.002(19)	0.004(3)	0(0)	non tumor-specific	nAS	no
CFAP43_LS040	chr10:104207824|104212007:-	CFAP43	cilia and flagella associated protein 43	protein coding gene	no	ENST00000357060.7;ENST00000278064.6;ENST00000369720.5;ENST00000369719.1	2.196	1.805	1.269	0.3(2870)	0.477(335)	0.446(7745)	non tumor-specific	exon_skip	yes
UN_NUDT22_LS0036	chr11:64227493|64227588:+	NUDT22	nudix hydrolase 22	protein coding gene	no	.	2.215	0.606	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_IFNA5_UP_LS0021	chr9:21329415|21330794:-	IFNA5	interferon alpha 5	protein coding gene	no	.	3.577	1.633	0.000	0.289(2772)	0.342(240)	0(0)	non tumor-specific	nAS	no
UN_AC118553.2_LS0005	chr1:100007600|100009288:+	AC118553.2	-	protein coding gene	no	.	1.874	0.333	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_YJEFN3_LS0003	chr19:19529517|19531435:+	YJEFN3	YjeF N-terminal domain containing 3	protein coding gene	no	.	5.866	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
TRABD2A_LS012	chr2:84842007|84870225:-	TRABD2A	TraB domain containing 2A	protein coding gene	no	ENST00000409520.6;ENST00000409133.1	14.564	14.584	1.876	0.527(5046)	0.556(390)	0.623(10822)	non tumor-specific	exon_skip	yes
EPG5_LS042	chr18:45934966|45939600:-	EPG5	ectopic P-granules autophagy protein 5 homolog	protein coding gene	no	ENST00000282041.10;ENST00000649336.1;ENST00000587974.1	5.358	3.361	3.691	0.65(6227)	0.816(573)	0.889(15457)	non tumor-specific	exon_skip	yes
ACSBG1_LS025	chr15:78209249|78212549:-	ACSBG1	acyl-CoA synthetase bubblegum family member 1	protein coding gene	no	ENST00000559241.5	1.238	0.525	2.427	0.009(91)	0.009(6)	0.076(1322)	non tumor-specific	exon_skip	yes
ANKRD13C_LS015	chr1:70315566|70324853:-	ANKRD13C	ankyrin repeat domain 13C	protein coding gene	no	ENST00000370944.8;ENST00000498735.1	19.755	15.777	11.963	0.939(8995)	0.983(690)	0.968(16834)	non tumor-specific	alt_3prime;exon_skip	yes
UN_HIST1H4PS1_UP_LS0005	chr6:27710889|27711090:+	HIST1H4PS1	H4 clustered histone 10, pseudogene	pseudogene	no	.	2.944	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP236383.2_UP_LS0138	chr21:8398952|8443181:-	FP236383.2	-	lncRNA gene	no	.	269.830	6.084	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL1A2_LS035	chr7:94415270|94416405:+	COL1A2	collagen type I alpha 2 chain	protein coding gene	no	ENST00000297268.10;ENST00000620463.1;ENST00000488298.5;ENST00000473573.5	506.366	270.444	164.770	0.983(9416)	0.996(699)	0.964(16763)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TXNDC11_LS0026	chr16:11700564|11703967:-	TXNDC11	thioredoxin domain containing 11	protein coding gene	no	.	1.409	0.284	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SERPINA10_LS0011	chr14:94293047|94293189:-	SERPINA10	serpin family A member 10	protein coding gene	no	.	1.563	1.280	0.000	0.003(33)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AC112229.3_LS0007	chr2:110424142|110425098:-	AC112229.3	-	protein coding gene	no	.	1.915	0.454	0.000	0.026(253)	0.014(10)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SEC14L6_LS0011	chr22:30532856|30533636:-	SEC14L6	SEC14 like lipid binding 6	protein coding gene	no	.	3.776	0.664	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TATDN1_LS014	chr8:124503951|124504275:-	TATDN1	TatD DNase domain containing 1	protein coding gene	no	ENST00000522810.5;ENST00000522810.5	5.629	2.549	1.426	0.882(8452)	0.866(608)	0.707(12291)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CCDC30_LS034	chr1:42589483|42590315:+	CCDC30	coiled-coil domain containing 30	protein coding gene	no	ENST00000471699.1	0.234	0.114	0.779	0.23(2200)	0.349(245)	0.176(3062)	non tumor-specific	alt_3prime;intron_retention	yes
ZNF852_LS002	chr3:44500637|44502542:-	ZNF852	zinc finger protein 852	protein coding gene	no	ENST00000650400.1;ENST00000489411.1	1.473	0.814	2.058	0.762(7302)	0.812(570)	0.803(13954)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GEMIN5_LS006	chr5:154898650|154899191:-	GEMIN5	gem nuclear organelle associated protein 5	protein coding gene	no	ENST00000285873.7	19.062	10.457	10.049	0.971(9299)	0.99(695)	0.97(16860)	non tumor-specific	exon_skip	yes
UN_AC244517.3_UP_LS0006	chr5:141224960|141247034:+	AC244517.3	-	pseudogene	no	.	4.480	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF292_LS001	chr6:87152869|87155191:+	ZNF292	zinc finger protein 292	protein coding gene	yes	ENST00000392985.3	0.436	0.151	0.716	0.056(538)	0.054(38)	0.189(3282)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GLYAT_LS007	chr11:58724511|58728664:-	GLYAT	glycine-N-acyltransferase	protein coding gene	no	ENST00000529732.5	0.163	0.351	0.762	0.041(392)	0.155(109)	0.014(235)	non tumor-specific	nAS	yes
UN_NACAD_LS0022	chr7:45083951|45084085:+	NACAD	NAC alpha domain containing	protein coding gene	no	.	4.768	0.599	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
SIPA1L1_LS014	chr14:71414102|71415976:+	SIPA1L1	signal induced proliferation associated 1 like 1	protein coding gene	no	ENST00000557469.1	0.335	0.003	0.747	0.024(226)	0.006(4)	0.001(10)	non tumor-specific	nAS	yes
UN_CTBS_UP_LS0006	chr1:84596535|84597949:-	CTBS	chitobiase	protein coding gene	no	.	2.138	0.844	0.000	0.009(89)	0.034(24)	0(0)	non tumor-specific	nAS	no
UN_ENPP7P11_UP_LS0039	chr4:9651113|9658948:+	ENPP7P11	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 11	pseudogene	no	.	1.626	0.475	0.000	0.012(112)	0.004(3)	0(0)	non tumor-specific	nAS	no
TMPRSS13_LS012	chr11:117914509|117917170:-	TMPRSS13	transmembrane serine protease 13	protein coding gene	no	.;.	5.887	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
ETV5_LS007	chr3:186066072|186077993:-	ETV5	ETS variant transcription factor 5	protein coding gene	no	ENST00000484223.1	0.913	0.264	0.707	0.01(93)	0.004(3)	0.018(318)	non tumor-specific	exon_skip	yes
UN_UBA1_LS0091	chrX:47206113|47206225:+	UBA1	ubiquitin like modifier activating enzyme 1	protein coding gene	no	.	21.914	7.358	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_INTS13_LS0018	chr12:26922696|26924355:-	INTS13	integrator complex subunit 13	protein coding gene	no	.	8.005	0.932	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SF3B2_LS0016	chr11:66057375|66058081:+	SF3B2	splicing factor 3b subunit 2	protein coding gene	no	.	20.799	3.357	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
TMEM131_LS047	chr2:97927487|97995476:-	TMEM131	transmembrane protein 131	protein coding gene	no	ENST00000186436.9;ENST00000418629.6;ENST00000489507.1	2.753	2.420	5.087	0.791(7582)	0.883(620)	0.931(16186)	non tumor-specific	exon_skip	yes
UN_INHBA-AS1_LS0006	chr7:41706314|41708853:-	INHBA-AS1	INHBA antisense RNA 1	lncRNA gene	no	.	1.715	2.365	0.000	0.003(30)	0.026(18)	0(0)	non tumor-specific	nAS	no
DNAH11_LS027	chr7:21618473|21619100:+	DNAH11	dynein axonemal heavy chain 11	protein coding gene	no	ENST00000465593.1	0.287	0.043	0.661	0.024(233)	0.033(23)	0.017(303)	non tumor-specific	alt_5prime	yes
AC011476.3_LS003	chr19:55006464|55042800:+	AC011476.3	-	lncRNA gene	no	ENST00000593060.5	1.107	0.501	0.924	0.204(1950)	0.194(136)	0.32(5562)	non tumor-specific	nAS	yes
ZNF91_LS020	chr19:23339260|23342170:-	ZNF91	zinc finger protein 91	protein coding gene	no	ENST00000599281.1	0.387	0.315	1.403	0.372(3563)	0.459(322)	0.605(10519)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SH3D21_LS0011	chr1:36317841|36319071:+	SH3D21	SH3 domain containing 21	protein coding gene	no	.	1.679	0.190	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_NUDT3_UP_LS0002	chr6:34425221|34744160:-	NUDT3	nudix hydrolase 3	protein coding gene	no	.	0.298	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HERC2P2_LS0118	chr15:22587391|22589893:+	HERC2P2	hect domain and RLD 2 pseudogene 2	pseudogene	no	.	12.411	1.152	0.000	0.02(187)	0.01(7)	0(0)	non tumor-specific	nAS	no
LINC01347_LS013	chr1:243089379|243091531:-	LINC01347	long intergenic non-protein coding RNA 1347	pseudogene	no	ENST00000627498.2	1.076	0.281	0.710	0.124(1188)	0.09(63)	0.201(3489)	non tumor-specific	nAS	yes
RAB32_LS002	chr6:146549741|146554456:+	RAB32	RAB32, member RAS oncogene family	protein coding gene	no	ENST00000367495.3	118.149	65.833	59.329	0.965(9247)	0.962(675)	0.977(16982)	non tumor-specific	nAS	yes
SLC12A6_LS030	chr15:34275389|34318561:-	SLC12A6	solute carrier family 12 member 6	protein coding gene	no	ENST00000290209.9	3.468	2.960	2.358	0.611(5851)	0.796(559)	0.746(12975)	non tumor-specific	exon_skip	yes
UN_MUC3A_LS0163	chr7:100958729|100958883:-	MUC3A	mucin 3A, cell surface associated	protein coding gene	no	.	2.502	2.917	0.000	0.047(454)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_CCDC183_LS0030	chr9:136806963|136807261:-	CCDC183	coiled-coil domain containing 183	protein coding gene	no	.	1.228	0.600	0.000	0.139(1331)	0.239(168)	0(0)	non tumor-specific	nAS	no
POM121C_LS007	chr7:75425708|75426362:-	POM121C	POM121 transmembrane nucleoporin C	protein coding gene	no	ENST00000615331.4;ENST00000607367.5;ENST00000439629.2;ENST00000479864.1	31.745	17.227	20.936	0.959(9186)	0.984(691)	0.978(16996)	non tumor-specific	exon_skip	yes
AL137847.2_LS003	chr9:83276559|83279157:+	AL137847.2	-	lncRNA gene	no	ENST00000458111.1	0.208	0.123	0.763	0.054(522)	0.127(89)	0.09(1562)	non tumor-specific	nAS	yes
UN_MCM7_LS0050	chr7:100098288|100098578:-	MCM7	minichromosome maintenance complex component 7	protein coding gene	no	.	33.133	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
SIGLEC6_LS014	chr19:51531519|51531582:-	SIGLEC6	sialic acid binding Ig like lectin 6	protein coding gene	no	ENST00000346477.7;ENST00000359982.8;ENST00000343300.8;ENST00000425629.7;ENST00000391797.3;ENST00000489837.1	1.197	0.485	0.964	0.121(1159)	0.254(178)	0.276(4793)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
KCNV1_LS001	chr8:109968599|109972258:-	KCNV1	potassium voltage-gated channel modifier subfamily V member 1	protein coding gene	no	ENST00000524391.5;ENST00000297404.1	1.926	1.738	2.361	0.141(1351)	0.1(70)	0.158(2755)	non tumor-specific	alt_5prime	yes
UN_MIA3_LS0013	chr1:222644087|222645554:+	MIA3	MIA SH3 domain ER export factor 3	protein coding gene	no	.	2.071	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEP126_LS0017	chr11:101981964|101983137:+	CEP126	centrosomal protein 126	protein coding gene	no	.	2.528	0.133	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM5_LS028	chr3:50106864|50107482:+	RBM5	RNA binding motif protein 5	protein coding gene	yes	ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5;ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5;ENST00000347869.7;ENST00000395174.6;ENST00000496179.5;ENST00000474818.5;ENST00000494360.5	46.048	28.959	126.882	0.991(9491)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC007881.2_LS0008	chr2:71050334|71055179:+	AC007881.2	-	lncRNA gene	no	.	3.771	1.070	0.000	0.065(622)	0.044(31)	0(0)	non tumor-specific	nAS	no
HIBADH_LS009	chr7:27629492|27632336:-	HIBADH	3-hydroxyisobutyrate dehydrogenase	protein coding gene	no	ENST00000265395.6;ENST00000428288.2;ENST00000425715.1	112.552	124.603	48.920	0.992(9502)	0.997(700)	0.978(16994)	non tumor-specific	nAS	yes
UN_NR3C1_LS0043	chr5:143404916|143405150:-	NR3C1	nuclear receptor subfamily 3 group C member 1	protein coding gene	no	.	2.519	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CNTLN_LS010	chr9:17330808|17332605:+	CNTLN	centlein	protein coding gene	no	ENST00000380647.7	3.446	1.577	2.912	0.542(5197)	0.608(427)	0.857(14890)	non tumor-specific	nAS	yes
IFT122_LS017	chr3:129458677|129459315:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000510524.5	0.041	0.005	0.677	0.01(96)	0.006(4)	0.084(1465)	non tumor-specific	exon_skip;mutex_exons	yes
UN_KRBOX4_LS0012	chrX:46449908|46450431:+	KRBOX4	KRAB box domain containing 4	protein coding gene	no	.	0.654	0.339	0.000	0.009(83)	0.016(11)	0(0)	non tumor-specific	nAS	no
BIRC7_LS004	chr20:63236445|63237903:+	BIRC7	baculoviral IAP repeat containing 7	protein coding gene	no	ENST00000342412.10;ENST00000217169.7;ENST00000342412.10;ENST00000217169.7;ENST00000342412.10;ENST00000217169.7	21.617	1.157	1.283	0.39(3736)	0.165(116)	0.374(6500)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_TTBK1_LS0007	chr6:43255644|43255737:+	TTBK1	tau tubulin kinase 1	protein coding gene	no	.	2.313	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
ATR_LS056	chr3:142561421|142562232:-	ATR	serpin family A member 2 (gene/pseudogene)	protein coding gene	yes	ENST00000350721.8;ENST00000515149.2;ENST00000507148.1	5.591	3.221	2.460	0.696(6666)	0.802(563)	0.815(14166)	non tumor-specific	alt_3prime;exon_skip	yes
COMT_LS004	chr22:19941897|19961229:+	COMT	catechol-O-methyltransferase	protein coding gene	no	.;.	1.519	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMEM273_LS0020	chr10:49165796|49166755:-	TMEM273	transmembrane protein 273	protein coding gene	no	.	0.667	0.127	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
AC087379.2_LS002	chr11:15704458|15705175:+	AC087379.2	-	lncRNA gene	no	ENST00000532242.1	3.999	1.940	0.934	0.073(696)	0.231(162)	0.147(2561)	non tumor-specific	nAS	yes
SPAG5_LS026	chr17:28585998|28586090:-	SPAG5	sperm associated antigen 5	protein coding gene	no	ENST00000321765.9;ENST00000584206.1	23.032	4.939	4.631	0.946(9064)	0.829(582)	0.912(15861)	non tumor-specific	nAS	yes
SYMPK_LS041	chr19:45854585|45863058:-	SYMPK	symplekin	protein coding gene	no	ENST00000598059.5	0.037	0.026	0.945	0.556(5324)	0.528(371)	0.532(9246)	non tumor-specific	alt_3prime	yes
UN_BOC_LS0028	chr3:113272703|113273205:+	BOC	BOC cell adhesion associated, oncogene regulated	protein coding gene	yes	.	4.174	0.519	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AL669831.3_LS0062	chr1:605865|631116:-	AL669831.3	-	pseudogene	no	.	17.878	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.1_LS0185	chr21:8214990|8215585:-	FP671120.1	-	lncRNA gene	no	.	71.626	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
PDGFRL_LS002	chr8:17576760|17577136:+	PDGFRL	platelet derived growth factor receptor like	protein coding gene	yes	ENST00000541323.1	0.567	0.048	0.642	0.024(227)	0.011(8)	0.024(414)	non tumor-specific	nAS	yes
UN_SPAG17_LS0035	chr1:118097851|118101740:-	SPAG17	sperm associated antigen 17	protein coding gene	no	.	2.198	1.216	0.000	0.021(203)	0.044(31)	0(0)	non tumor-specific	exon_skip	no
UN_E2F3_LS0056	chr6:20454335|20479846:+	E2F3	E2F transcription factor 3	protein coding gene	yes	.	1.121	0.169	0.000	0.016(152)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
COL5A2_LS044	chr2:189084037|189085160:-	COL5A2	collagen type V alpha 2 chain	protein coding gene	no	ENST00000374866.8;ENST00000618828.1;ENST00000649066.1	51.700	19.266	17.529	0.876(8394)	0.939(659)	0.902(15671)	non tumor-specific	nAS	yes
RAPGEF2_LS022	chr4:159330498|159331431:+	RAPGEF2	Rap guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000644474.1;ENST00000644902.1;ENST00000264431.8	11.950	12.529	10.599	0.715(6852)	0.916(643)	0.964(16751)	non tumor-specific	nAS	yes
NFATC3_LS023	chr16:68191775|68221231:+	NFATC3	nuclear factor of activated T cells 3	protein coding gene	no	.;.	4.617	1.661	0.000	0.02(192)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
TPP1_LS020	chr11:6617153|6617359:-	TPP1	tripeptidyl peptidase 1	protein coding gene	no	ENST00000645620.1;ENST00000644683.1	10.764	3.600	0.000	0.004(37)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
FKBP10_LS010	chr17:41817203|41818089:+	FKBP10	FKBP prolyl isomerase 10	protein coding gene	no	ENST00000585664.5;ENST00000585922.5;ENST00000429461.5;ENST00000321562.8	78.629	23.734	34.161	0.968(9279)	0.991(696)	0.95(16516)	non tumor-specific	alt_3prime;exon_skip	yes
UN_COG4_LS0026	chr16:70501089|70508406:-	COG4	component of oligomeric golgi complex 4	protein coding gene	no	.	15.167	3.427	0.000	0.012(119)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL512329.2_UP_LS0035	chr6:1592496|1593956:-	AL512329.2	-	lncRNA gene	no	.	4.548	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC88B_LS017	chr11:64343914|64349331:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	.;.	1.077	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
TRAIP_LS017	chr3:49843928|49844541:-	TRAIP	TRAF interacting protein	protein coding gene	no	ENST00000331456.6;ENST00000482582.5;ENST00000482243.1;ENST00000477546.5;ENST00000489948.5	4.984	1.233	2.194	0.913(8747)	0.774(543)	0.823(14314)	non tumor-specific	alt_3prime;exon_skip	yes
EPHB1_LS020	chr3:135154276|135162018:+	EPHB1	EPH receptor B1	protein coding gene	no	ENST00000398015.7;ENST00000647596.1;ENST00000493838.1	7.467	4.510	2.523	0.361(3454)	0.521(366)	0.651(11316)	non tumor-specific	nAS	yes
GAPDHS_LS002	chr19:35533594|35538307:+	GAPDHS	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein coding gene	no	ENST00000586334.1	0.316	0.000	0.745	0.04(385)	0(0)	0.006(103)	non tumor-specific	exon_skip	yes
UN_DNASE1L1_LS0048	chrX:154411357|154411891:-	DNASE1L1	deoxyribonuclease 1 like 1	protein coding gene	no	.	2.869	1.148	0.000	0.12(1149)	0.105(74)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ARHGEF37_LS0003	chr5:149564882|149597759:+	ARHGEF37	Rho guanine nucleotide exchange factor 37	protein coding gene	no	.	1.319	0.297	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
IDE_LS037	chr10:92558922|92559034:-	IDE	insulin degrading enzyme	protein coding gene	no	ENST00000478361.6	2.084	0.175	0.659	0.001(7)	0.001(1)	0.046(792)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CUL9_LS0040	chr6:43206510|43213154:+	CUL9	cullin 9	protein coding gene	no	.	2.751	0.149	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NEDD1_LS013	chr12:96907624|96917621:+	NEDD1	NEDD1 gamma-tubulin ring complex targeting factor	protein coding gene	no	ENST00000555806.5;ENST00000553609.5;ENST00000555806.5;ENST00000553609.5	0.044	0.069	0.673	0.396(3793)	0.399(280)	0.178(3090)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EEF1DP4_UP_LS0012	chr7:64852116|64858207:+	EEF1DP4	eukaryotic translation elongation factor 1 delta pseudogene 4	pseudogene	no	.	2.518	0.471	0.000	0.02(189)	0.016(11)	0(0)	non tumor-specific	nAS	no
COL24A1_LS041	chr1:85960880|85961249:-	COL24A1	collagen type XXIV alpha 1 chain	protein coding gene	no	ENST00000426639.5	1.092	0.106	0.805	0.005(45)	0.001(1)	0.151(2631)	non tumor-specific	exon_skip	yes
EDIL3_LS012	chr5:84180521|84254084:-	EDIL3	EGF like repeats and discoidin domains 3	protein coding gene	no	ENST00000380138.3	7.253	6.845	3.862	0.693(6642)	0.838(588)	0.761(13232)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC092131.1_LS0007	chr16:64418171|64475689:+	AC092131.1	-	lncRNA gene	no	.	2.322	0.575	0.000	0.017(162)	0.006(4)	0(0)	non tumor-specific	nAS	no
MAN2A1_LS005	chr5:109755456|109767535:+	MAN2A1	mannosidase alpha class 2A member 1	protein coding gene	no	ENST00000261483.4	15.395	13.877	4.940	0.838(8033)	0.956(671)	0.914(15890)	non tumor-specific	nAS	yes
UN_DDX54_LS0045	chr12:113177093|113178112:-	DDX54	DEAD-box helicase 54	protein coding gene	no	.	1.815	0.006	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DDR1_LS0001	chr6:30881125|30883981:+	DDR1	discoidin domain receptor tyrosine kinase 1	protein coding gene	no	.	5.813	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_LINC02198_LS0007	chr5:69027995|69029339:-	LINC02198	long intergenic non-protein coding RNA 2198	lncRNA gene	no	.	0.683	0.154	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	nAS	no
ADGRL3_LS031	chr4:62044549|62063505:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000507164.5;ENST00000508693.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5	0.367	0.067	1.200	0.072(691)	0.028(20)	0.148(2579)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TONSL_LS0005	chr8:144429712|144435286:+	TONSL	tonsoku like, DNA repair protein	protein coding gene	no	.	0.530	0.142	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ISPD_LS0017	chr7:16374815|16376092:-	ISPD	CDP-L-ribitol pyrophosphorylase A	protein coding gene	no	.	2.156	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TTN-AS1_LS054	chr2:178542361|178582572:+	TTN-AS1	TTN antisense RNA 1	lncRNA gene	no	ENST00000419746.5;ENST00000586831.5	0.788	0.000	0.626	0.002(19)	0(0)	0.022(377)	non tumor-specific	nAS	yes
UN_PRIM2_LS0051	chr6:57537625|57544030:+	PRIM2	DNA primase subunit 2	protein coding gene	no	.	1.758	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UIMC1_LS013	chr5:176958154|176968555:-	UIMC1	ubiquitin interaction motif containing 1	protein coding gene	yes	ENST00000377227.8;ENST00000511320.5;ENST00000512031.5;ENST00000503273.1	19.553	11.336	21.171	0.983(9417)	0.991(696)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_IGFBP5_LS0322	chr2:216694944|216695455:+	IGFBP5	insulin like growth factor binding protein 5	protein coding gene	yes	.	1.487	1.639	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_C2CD2L_LS0019	chr11:119110957|119111056:+	C2CD2L	C2CD2 like	protein coding gene	no	.	7.578	1.044	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
QRICH1_LS014	chr3:49057890|49076709:-	QRICH1	glutamine rich 1	protein coding gene	no	ENST00000395443.6;ENST00000357496.6;ENST00000424300.5;ENST00000395443.6;ENST00000357496.6;ENST00000424300.5	42.519	30.392	52.029	0.981(9398)	0.993(697)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CDK4_LS019	chr12:57751696|57752175:-	CDK4	cyclin dependent kinase 4	protein coding gene	yes	ENST00000551800.5	1.061	0.318	1.505	0.383(3672)	0.403(283)	0.744(12926)	non tumor-specific	alt_3prime;exon_skip	yes
GALC_LS015	chr14:87968490|87976358:-	GALC	galactosylceramidase	protein coding gene	no	ENST00000555000.5;ENST00000261304.6;ENST00000544807.6;ENST00000393569.6;ENST00000393568.8;ENST00000557316.5;ENST00000474294.6;ENST00000622264.4;ENST00000477716.3	17.813	17.204	13.654	0.955(9151)	0.99(695)	0.977(16977)	non tumor-specific	nAS	yes
KLKB1_LS014	chr4:186238365|186250243:+	KLKB1	kallikrein B1	protein coding gene	no	ENST00000511608.5;ENST00000264690.10;ENST00000513864.2;ENST00000511406.5;ENST00000511608.5;ENST00000264690.10;ENST00000513864.2;ENST00000511406.5	2.267	8.754	2.882	0.164(1571)	0.282(198)	0.765(13302)	non tumor-specific	alt_3prime;alt_5prime	yes
PHYKPL_LS015	chr5:178214885|178222852:-	PHYKPL	5-phosphohydroxy-L-lysine phospho-lyase	protein coding gene	no	.;.	1.190	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
NMNAT2_LS004	chr1:183278629|183283995:-	NMNAT2	nicotinamide nucleotide adenylyltransferase 2	protein coding gene	no	ENST00000294868.8;ENST00000287713.6	6.218	8.471	3.136	0.35(3357)	0.372(261)	0.684(11883)	non tumor-specific	nAS	yes
NAV3_LS014	chr12:78007445|78010841:+	NAV3	neuron navigator 3	protein coding gene	no	ENST00000550673.1	0.047	0.001	0.744	0.013(124)	0.017(12)	0.001(10)	non tumor-specific	nAS	yes
PKN1_LS030	chr19:14470682|14470771:+	PKN1	protein kinase N1	protein coding gene	no	ENST00000585839.5;ENST00000242783.10;ENST00000342216.8;ENST00000591461.1	372.164	166.688	213.015	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MSC-AS1_LS0036	chr8:72075462|72089948:-	MSC-AS1	MSC antisense RNA 1	lncRNA gene	no	.	5.898	0.512	0.000	0.006(60)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_SELENON_LS0004	chr1:25801160|25802012:+	SELENON	selenoprotein N	protein coding gene	no	.	3.342	0.335	0.000	0.006(55)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CHID1_LS0003	chr11:869345|869797:-	CHID1	chitinase domain containing 1	protein coding gene	no	.	4.633	0.769	0.000	0.006(60)	0.007(5)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
PEX19_LS001	chr1:160277387|160278131:-	PEX19	peroxisomal biogenesis factor 19	protein coding gene	no	ENST00000467711.5	0.605	0.322	1.248	0.586(5618)	0.617(433)	0.684(11897)	non tumor-specific	intron_retention	yes
UN_MUC17_LS0390	chr7:101038743|101039452:+	MUC17	mucin 17, cell surface associated	protein coding gene	no	.	14.019	4.296	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00271_LS003	chr6:135498000|135642193:+	LINC00271	long intergenic non-protein coding RNA 271	lncRNA gene	no	ENST00000421378.2	0.947	0.914	1.074	0.229(2190)	0.439(308)	0.262(4548)	non tumor-specific	nAS	yes
UN_SLC25A40_LS0019	chr7:87859288|87860072:-	SLC25A40	solute carrier family 25 member 40	protein coding gene	no	.	0.928	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SLC25A6_LS0057	chrX:1386591|1389486:+	SLC25A6	solute carrier family 25 member 6	protein coding gene	no	.	11.281	2.834	0.000	0.002(20)	0.01(7)	0(0)	non tumor-specific	nAS	no
ATP11A_LS002	chr13:112696911|112717322:+	ATP11A	ATPase phospholipid transporting 11A	protein coding gene	no	ENST00000419448.1	0.215	0.034	0.523	0.002(21)	0.001(1)	0(2)	non tumor-specific	nAS	yes
UN_LINC00676_UP_LS0004	chr13:109453189|109470967:+	LINC00676	long intergenic non-protein coding RNA 676	lncRNA gene	no	.	4.812	0.445	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ACBD6_LS0054	chr1:180502458|180502534:+	ACBD6	acyl-CoA binding domain containing 6	protein coding gene	no	.	1.198	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
FAM120B_LS001	chr6:170291072|170317370:+	FAM120B	family with sequence similarity 120B	protein coding gene	no	ENST00000630384.2	0.029	0.033	0.716	0.131(1255)	0.201(141)	0.064(1119)	non tumor-specific	nAS	yes
UN_SLC38A10_LS0129	chr17:81283502|81289691:-	SLC38A10	solute carrier family 38 member 10	protein coding gene	no	.	4.214	1.399	0.000	0.028(266)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
UN_CRNDE_LS0013	chr16:54887020|54891402:-	CRNDE	colorectal neoplasia differentially expressed	lncRNA gene	no	.	3.496	0.330	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_HNRNPA1P10_LS0009	chr19:11666264|11666358:-	HNRNPA1P10	heterogeneous nuclear ribonucleoprotein A1 pseudogene 10	pseudogene	no	.	85.584	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPFIBP2_LS0032	chr11:7604119|7610291:+	PPFIBP2	PPFIA binding protein 2	protein coding gene	no	.	0.599	0.375	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP000311.1_LS0027	chr21:33624756|33631486:-	AP000311.1	-	protein coding gene	no	.	4.930	0.388	0.000	0.003(25)	0.004(3)	0(0)	non tumor-specific	nAS	no
FAM102B_LS011	chr1:108629657|108635431:+	FAM102B	family with sequence similarity 102 member B	protein coding gene	no	.;.	2.706	0.744	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ITGA5_LS0022	chr12:54395556|54397708:-	ITGA5	integrin subunit alpha 5	protein coding gene	yes	.	31.161	2.215	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC008740.1_LS002	chr16:21349430|21352100:+	AC008740.1	-	pseudogene	no	ENST00000549658.2	0.289	0.189	0.959	0.236(2260)	0.179(126)	0.417(7247)	non tumor-specific	nAS	yes
UN_ESR1_LS0077	chr6:151970362|152011656:+	ESR1	estrogen receptor 1	protein coding gene	yes	.	3.039	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
AL450322.2_LS002	chr10:3752622|3759185:+	AL450322.2	-	lncRNA gene	no	ENST00000421629.2	0.217	0.000	0.664	0(2)	0(0)	0.004(63)	non tumor-specific	nAS	yes
SH3GL3_LS011	chr15:83587086|83588662:+	SH3GL3	SH3 domain containing GRB2 like 3, endophilin A3	protein coding gene	no	ENST00000427482.6;ENST00000563901.5;ENST00000324537.5	8.903	13.260	2.295	0.282(2698)	0.386(271)	0.513(8915)	non tumor-specific	exon_skip	yes
CADPS_LS039	chr3:62550115|62557405:-	CADPS	calcium dependent secretion activator	protein coding gene	no	ENST00000612439.4;ENST00000383710.8;ENST00000357948.7;ENST00000283269.13;ENST00000542833.1	5.328	4.461	2.216	0.228(2187)	0.117(82)	0.502(8733)	non tumor-specific	nAS	yes
DMKN_LS020	chr19:35500419|35500533:-	DMKN	dermokine	protein coding gene	no	ENST00000434389.5;ENST00000402589.6;ENST00000462721.5;ENST00000467532.5;ENST00000480502.5;ENST00000429837.5;ENST00000443640.5;ENST00000602781.5;ENST00000493979.5;ENST00000464894.5	0.715	0.528	7.835	0.797(7632)	0.919(645)	0.909(15793)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AC010463.1_LS009	chr19:17276909|17282062:+	AC010463.1	-	protein coding gene	no	ENST00000596542.1	0.078	0.001	0.634	0.029(280)	0.003(2)	0.016(282)	non tumor-specific	nAS	yes
COL4A1_LS025	chr13:110183097|110183184:-	COL4A1	collagen type IV alpha 1 chain	protein coding gene	no	ENST00000375820.9;ENST00000649738.1	152.591	78.795	48.413	0.955(9153)	0.983(690)	0.936(16278)	non tumor-specific	alt_3prime	yes
UN_AP001267.5_LS0004	chr11:118401717|118406745:+	AP001267.5	-	protein coding gene	no	.	107.214	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_NUFIP1_LS0003	chr13:44949838|44965844:-	NUFIP1	nuclear FMR1 interacting protein 1	protein coding gene	no	.	2.757	0.385	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
B3GNTL1_LS002	chr17:82942682|82943822:-	B3GNTL1	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1	protein coding gene	no	ENST00000572267.1	1.547	0.649	1.418	0.752(7202)	0.614(431)	0.665(11552)	non tumor-specific	alt_3prime;intron_retention	yes
HMGA1_LS016	chr6:34240915|34242712:+	HMGA1	high mobility group AT-hook 1	protein coding gene	yes	ENST00000447654.5;ENST00000311487.9	339.654	65.313	45.703	0.996(9540)	0.996(699)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
NOMO2_LS001	chr16:18417509|18417841:-	NOMO2	NODAL modulator 2	protein coding gene	no	ENST00000381474.7;ENST00000564991.5	1.534	0.974	0.694	0.774(7417)	0.785(551)	0.005(87)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
AMOTL2_LS018	chr3:134371494|134374818:-	AMOTL2	angiomotin like 2	protein coding gene	no	ENST00000506107.1	0.127	0.095	0.802	0.311(2977)	0.427(300)	0.328(5708)	non tumor-specific	alt_5prime	yes
UN_PGM5P4_LS0004	chr2:113556580|113563136:+	PGM5P4	phosphoglucomutase 5 pseudogene 4	pseudogene	no	.	3.614	4.813	0.000	0.144(1383)	0.665(467)	0(0)	non tumor-specific	nAS	no
CPVL_LS006	chr7:29066121|29071773:-	CPVL	carboxypeptidase vitellogenic like	protein coding gene	no	ENST00000265394.9;ENST00000396276.7;ENST00000409850.5;ENST00000448959.5	47.088	42.406	22.736	0.983(9421)	0.997(700)	0.958(16657)	non tumor-specific	alt_3prime;exon_skip	yes
SRGAP3_LS007	chr3:9010387|9013308:-	SRGAP3	SLIT-ROBO Rho GTPase activating protein 3	protein coding gene	yes	ENST00000383836.7;ENST00000360413.7;ENST00000518265.5;ENST00000618999.4	7.474	5.945	3.636	0.507(4857)	0.605(425)	0.845(14683)	non tumor-specific	nAS	yes
UN_NPIPB3_LS0101	chr16:21404088|21404342:+	NPIPB3	nuclear pore complex interacting protein family member B3	protein coding gene	no	.	7.356	1.365	0.000	0.008(81)	0.004(3)	0(0)	non tumor-specific	nAS	no
ZNF273_LS006	chr7:64882785|64893412:+	ZNF273	zinc finger protein 273	protein coding gene	no	ENST00000527278.5	0.783	0.473	2.194	0.105(1009)	0.229(161)	0.65(11291)	non tumor-specific	alt_3prime;exon_skip	yes
ARL13B_LS008	chr3:93995944|93996563:+	ARL13B	ADP ribosylation factor like GTPase 13B	protein coding gene	no	ENST00000478400.3;ENST00000335438.7	0.339	0.372	0.999	0.555(5318)	0.718(504)	0.51(8866)	non tumor-specific	alt_3prime;exon_skip	yes
COL5A1_LS030	chr9:134774912|134780102:+	COL5A1	collagen type V alpha 1 chain	protein coding gene	no	ENST00000371817.7;ENST00000618395.4	71.932	30.257	22.269	0.853(8172)	0.944(663)	0.913(15869)	non tumor-specific	nAS	yes
UN_VPS13D_LS0017	chr1:12304647|12308431:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	.	0.813	0.720	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
MED14_LS022	chrX:40697183|40701165:-	MED14	mediator complex subunit 14	protein coding gene	no	ENST00000324817.5	23.743	13.439	14.883	0.902(8639)	0.966(678)	0.974(16927)	non tumor-specific	exon_skip	yes
UN_HLA-T_UP_LS0013	chr6:29801319|29889387:+	HLA-T	major histocompatibility complex, class I, T (pseudogene)	pseudogene	no	.	30.226	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093802.2_UP_LS0002	chr2:239660601|239660688:+	AC093802.2	-	lncRNA gene	no	.	1.864	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
MIR9-3HG_LS019	chr15:89388746|89389345:+	MIR9-3HG	MIR9-3 host gene	lncRNA gene	no	ENST00000561037.5	0.291	0.012	0.878	0.027(258)	0.004(3)	0.01(176)	non tumor-specific	nAS	yes
UN_MUC20P1_UP_LS0004	chr3:195558606|195559638:+	MUC20P1	mucin 20, cell surface associated pseudogene 1	pseudogene	no	.	8.518	0.753	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00865_LS003	chr10:89835257|89837218:+	LINC00865	long intergenic non-protein coding RNA 865	lncRNA gene	no	ENST00000448963.5;ENST00000448490.1	1.115	1.473	0.890	0.022(212)	0.087(61)	0.029(508)	non tumor-specific	nAS	yes
COASY_LS017	chr17:42563322|42563961:+	COASY	Coenzyme A synthase	protein coding gene	no	ENST00000421097.6;ENST00000591779.5;ENST00000590958.5;ENST00000393818.2;ENST00000421097.6;ENST00000591779.5;ENST00000590958.5;ENST00000393818.2	56.383	41.213	59.212	0.995(9536)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SLC26A9_LS0026	chr1:205935180|205935608:+	SLC26A9	solute carrier family 26 member 9	protein coding gene	no	.	5.467	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF254_LS0071	chr19:24058106|24058266:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	2.323	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	intron_retention	no
CHST11_LS002	chr12:104457514|104601906:+	CHST11	carbohydrate sulfotransferase 11	protein coding gene	no	ENST00000549260.5;ENST00000546689.1	7.026	1.770	3.275	0.85(8148)	0.87(611)	0.875(15216)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL513124.1_UP_LS0007	chr9:73943444|73978841:-	AL513124.1	-	pseudogene	no	.	2.798	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GART_LS0002	chr21:33504315|33504408:-	GART	phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase	protein coding gene	no	.	2.438	0.064	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_ARHGEF12_LS0046	chr11:120485820|120488363:-	ARHGEF12	Rho guanine nucleotide exchange factor 12	protein coding gene	yes	.	1.093	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC247036.1_UP_LS0164	chr14:106055756|106116848:+	AC247036.1	-	lncRNA gene	no	.	4.017	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
COA1_LS025	chr7:43648652|43656033:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.;.	3.565	0.374	0.000	0.029(276)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ANKRD53_LS010	chr2:70982697|70984123:+	ANKRD53	ankyrin repeat domain 53	protein coding gene	no	ENST00000272421.10;ENST00000441349.5;ENST00000460927.1	0.292	0.280	2.142	0.531(5089)	0.721(506)	0.74(12860)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
AL035530.2_LS012	chr6:159042308|159067239:+	AL035530.2	-	lncRNA gene	no	ENST00000646912.1	0.843	0.578	0.000	0.001(10)	0.003(2)	0(0)	non tumor-specific	nAS	yes
MYOM1_LS019	chr18:3116515|3119869:-	MYOM1	myomesin 1	protein coding gene	no	ENST00000356443.8;ENST00000400569.7;ENST00000261606.11	3.188	3.511	6.840	0.278(2659)	0.725(509)	0.915(15897)	non tumor-specific	exon_skip	yes
PTPN13_LS001	chr4:86594789|86635252:+	PTPN13	protein tyrosine phosphatase non-receptor type 13	protein coding gene	yes	ENST00000427191.6;ENST00000436978.5;ENST00000502971.5;ENST00000316707.10;ENST00000411767.6	2.596	3.577	2.272	0.572(5484)	0.761(534)	0.698(12129)	non tumor-specific	exon_skip	yes
UN_IGHG1_LS0023	chr14:105741593|105741731:-	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	291.020	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCMF1_UP_LS0011	chr2:84926348|84941214:+	KCMF1	potassium channel modulatory factor 1	protein coding gene	no	.	1.472	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHVIII-16-1_UP_LS0001	chr14:106174416|106511190:-	IGHVIII-16-1	immunoglobulin heavy variable (III)-16-1 (pseudogene)	no	no	.	45.402	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
DDX24_LS011	chr14:94062621|94081119:-	DDX24	DEAD-box helicase 24	protein coding gene	no	ENST00000544005.5	0.031	0.047	0.794	0.691(6618)	0.736(517)	0.131(2271)	non tumor-specific	exon_skip	yes
NOLC1_LS019	chr10:102160024|102160233:+	NOLC1	nucleolar and coiled-body phosphoprotein 1	protein coding gene	no	ENST00000605788.5;ENST00000405356.5;ENST00000464969.6;ENST00000488254.6;ENST00000603946.5;ENST00000370007.5	98.883	50.930	41.079	0.99(9481)	0.994(698)	0.979(17013)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_BCL2L1_LS0135	chr20:31666003|31721700:+	BCL2L1	BCL2 like 1	protein coding gene	yes	.	2.193	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TRAK1_LS023	chr3:42209922|42217247:+	TRAK1	trafficking kinesin protein 1	protein coding gene	no	.;.	3.231	1.085	0.000	0.019(179)	0.016(11)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_ABL1_LS0049	chr9:130874561|130874868:+	ABL1	ABL proto-oncogene 1, non-receptor tyrosine kinase	protein coding gene	yes	.	1.697	0.293	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
SLC14A2_LS021	chr18:45668022|45668349:+	SLC14A2	solute carrier family 14 member 2	protein coding gene	no	ENST00000586448.5;ENST00000255226.10	4.157	11.171	0.766	0.039(378)	0.13(91)	0.093(1618)	non tumor-specific	nAS	yes
UN_CRBN_LS0014	chr3:3154828|3156219:-	CRBN	cereblon	protein coding gene	no	.	2.608	1.847	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MAGED4B_LS018	chrX:52066453|52066865:-	MAGED4B	MAGE family member D4B	protein coding gene	no	ENST00000497164.5;ENST00000360134.10;ENST00000485287.5;ENST00000335504.9	13.168	4.805	0.806	0.831(7965)	0.879(617)	0.113(1962)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_GRM5_LS0006	chr11:88512348|88690326:+	GRM5	glutamate metabotropic receptor 5	protein coding gene	no	.	7.027	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL3_LS005	chr3:131469773|131471171:-	MRPL3	mitochondrial ribosomal protein L3	protein coding gene	no	ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5;ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5	232.645	94.050	93.018	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
IDH1_LS013	chr2:208253959|208254939:-	IDH1	isocitrate dehydrogenase (NADP(+)) 1	protein coding gene	yes	ENST00000345146.6;ENST00000462386.5;ENST00000417583.5;ENST00000451391.5;ENST00000481557.1	73.564	69.778	21.321	0.988(9470)	0.994(698)	0.975(16951)	non tumor-specific	alt_5prime	yes
UN_OR1H1P_UP_LS0007	chr9:122502870|122579953:+	OR1H1P	olfactory receptor family 1 subfamily H member 1 pseudogene	pseudogene	no	.	2.828	0.141	0.000	0.025(238)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_FBXL20_LS0060	chr17:39343241|39401359:-	FBXL20	F-box and leucine rich repeat protein 20	protein coding gene	no	.	0.714	0.025	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_PRDM4_LS0010	chr12:107741260|107743197:-	PRDM4	PR/SET domain 4	protein coding gene	yes	.	1.555	0.146	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
DOC2A_LS030	chr16:30010989|30011628:-	DOC2A	double C2 domain alpha	protein coding gene	no	ENST00000564233.5	0.611	0.000	0.863	0.01(94)	0.001(1)	0.035(603)	non tumor-specific	nAS	yes
PPP4R1_LS013	chr18:9563010|9563378:-	PPP4R1	protein phosphatase 4 regulatory subunit 1	protein coding gene	no	ENST00000578557.1	1.454	0.676	0.861	0.396(3794)	0.43(302)	0.459(7973)	non tumor-specific	alt_3prime	yes
ARHGEF38_LS012	chr4:105654169|105655603:+	ARHGEF38	Rho guanine nucleotide exchange factor 38	protein coding gene	no	ENST00000420470.2;ENST00000508036.2	5.290	2.932	2.848	0.347(3323)	0.618(434)	0.219(3812)	non tumor-specific	exon_skip	yes
UN_NEMF_UP_LS0039	chr14:49853864|49862619:-	NEMF	nuclear export mediator factor	protein coding gene	no	.	118.686	8.855	0.000	0.008(74)	0.006(4)	0(0)	non tumor-specific	nAS	no
FADS2_LS017	chr11:61837888|61840334:+	FADS2	fatty acid desaturase 2	protein coding gene	no	ENST00000257261.10;ENST00000522056.5;ENST00000518606.5;ENST00000278840.8;ENST00000517312.5;ENST00000521849.5	119.945	83.617	34.880	0.978(9374)	0.991(696)	0.978(16991)	non tumor-specific	nAS	yes
UN_NUDT5_LS0032	chr10:12187959|12195770:-	NUDT5	nudix hydrolase 5	protein coding gene	no	.	1.713	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MAST4_LS061	chr5:67153580|67160456:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	ENST00000403625.6;ENST00000403666.5;ENST00000405643.5;ENST00000261569.11;ENST00000443808.1	7.528	7.330	4.243	0.782(7493)	0.94(660)	0.861(14973)	non tumor-specific	exon_skip	yes
SLC29A2_LS016	chr11:66367548|66367772:-	SLC29A2	solute carrier family 29 member 2	protein coding gene	no	ENST00000311161.11;ENST00000357440.6;ENST00000540386.5;ENST00000619145.4;ENST00000544554.5;ENST00000541567.5;ENST00000546034.1	21.106	9.355	11.873	0.829(7943)	0.89(625)	0.953(16567)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_HCFC1_LS0053	chrX:153951080|153951350:-	HCFC1	host cell factor C1	protein coding gene	no	.	5.411	1.348	0.000	0.003(28)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_MARK3_LS0010	chr14:103405573|103481999:-	MARK3	microtubule affinity regulating kinase 3	protein coding gene	no	.	5.640	2.083	0.000	0.003(32)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_AC004889.1_LS0008	chr7:144196978|144199750:+	AC004889.1	-	lncRNA gene	no	.	0.679	0.243	0.000	0.001(12)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SFN_UP_LS0004	chr1:26817932|26832447:+	SFN	stratifin	protein coding gene	yes	.	3.510	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
TPD52L2_LS001	chr20:63865384|63869296:+	TPD52L2	TPD52 like 2	protein coding gene	no	ENST00000611972.4;ENST00000615907.4;ENST00000346249.8;ENST00000348257.9;ENST00000352482.8;ENST00000351424.8;ENST00000217121.9;ENST00000358548.4	78.969	43.488	67.686	0.957(9169)	0.964(677)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_MSI2_LS0054	chr17:57650673|57652099:+	MSI2	musashi RNA binding protein 2	protein coding gene	no	.	33.468	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CAPN12_LS0066	chr19:38744446|38762892:-	CAPN12	calpain 12	protein coding gene	no	.	1.406	0.519	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
AC104257.1_LS002	chr8:131310712|131312556:+	AC104257.1	-	lncRNA gene	no	ENST00000519695.5;ENST00000524275.5;ENST00000519005.1	1.614	0.740	0.930	0.029(280)	0.017(12)	0.079(1366)	non tumor-specific	nAS	yes
UN_IL32_LS0190	chr16:3069416|3082038:-	IL32	interleukin 32	protein coding gene	no	.	2.529	0.137	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PBXIP1_LS0046	chr1:154945091|154945564:+	PBXIP1	PBX homeobox interacting protein 1	protein coding gene	no	.	3.937	1.799	0.000	0.006(56)	0.017(12)	0(0)	non tumor-specific	nAS	no
SMARCA4_LS029	chr19:11003159|11003340:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000344626.9;ENST00000643549.1;ENST00000646693.1;ENST00000642726.1;ENST00000646484.1;ENST00000644737.1;ENST00000642628.1;ENST00000643296.1;ENST00000647230.1;ENST00000646510.1;ENST00000429416.8;ENST00000645460.1;ENST00000541122.6;ENST00000589677.5;ENST00000444061.8;ENST00000590574.6;ENST00000413806.7;ENST00000450717.7;ENST00000591545.6;ENST00000643995.1;ENST00000644327.1;ENST00000644065.1;ENST00000644963.1;ENST00000643208.1;ENST00000642350.1;ENST00000645061.1;ENST00000644290.1;ENST00000647268.1;ENST00000644267.1;ENST00000643857.1;ENST00000646183.1;ENST00000646746.1;ENST00000643534.1;ENST00000646513.1;ENST00000647011.1	63.822	32.387	34.133	0.992(9504)	0.993(697)	0.979(17016)	non tumor-specific	nAS	yes
AC010655.2_LS003	chr7:128457299|128466563:+	AC010655.2	-	lncRNA gene	no	ENST00000493710.1	0.082	0.257	0.717	0.308(2954)	0.228(160)	0.139(2408)	non tumor-specific	nAS	yes
B4GALNT4_LS019	chr11:379701|379866:+	B4GALNT4	beta-1,4-N-acetyl-galactosaminyltransferase 4	protein coding gene	no	ENST00000329962.10	17.253	5.380	5.691	0.607(5814)	0.328(230)	0.801(13915)	non tumor-specific	nAS	yes
UN_RNF157_LS0031	chr17:76145564|76153125:+	RNF157	ring finger protein 157	protein coding gene	no	.	1.974	1.293	0.000	0.008(74)	0.007(5)	0(0)	non tumor-specific	nAS	no
POTEB_LS005	chr15:21858048|21865016:-	POTEB	POTE ankyrin domain family member B	protein coding gene	no	ENST00000435397.6	1.575	0.000	0.000	0.001(10)	0(0)	0(0)	non tumor-specific	nAS	yes
SMIM15_LS002	chr5:61161227|61162217:-	SMIM15	small integral membrane protein 15	protein coding gene	no	ENST00000339020.7;ENST00000507416.1	64.938	43.939	21.847	0.991(9498)	0.994(698)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LRRC37A12P_UP_LS0002	chr1:32427536|32434733:-	LRRC37A12P	leucine rich repeat containing 37 member A12, pseudogene	pseudogene	no	.	0.957	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP1R16B_LS0008	chr20:38883540|38889595:+	PPP1R16B	protein phosphatase 1 regulatory subunit 16B	protein coding gene	no	.	0.949	0.145	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CELSR1_LS0019	chr22:46363551|46363996:-	CELSR1	cadherin EGF LAG seven-pass G-type receptor 1	protein coding gene	no	.	2.911	0.570	0.000	0.014(138)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TP53BP1_LS002	chr15:43408088|43408897:-	TP53BP1	tumor protein p53 binding protein 1	protein coding gene	yes	ENST00000382044.8;ENST00000263801.7;ENST00000476454.5;ENST00000411772.5;ENST00000382039.7;ENST00000450115.6	29.133	11.657	51.391	0.991(9490)	0.967(679)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FANCL_LS021	chr2:58198662|58204130:-	FANCL	FA complementation group L	protein coding gene	no	ENST00000403295.7;ENST00000233741.8;ENST00000402135.7;ENST00000403676.5;ENST00000449070.5;ENST00000427708.6;ENST00000417361.1	18.977	8.669	14.043	0.98(9393)	0.991(696)	0.964(16756)	non tumor-specific	nAS	yes
SPAG16_LS025	chr2:213924004|214013951:+	SPAG16	sperm associated antigen 16	protein coding gene	no	ENST00000480494.1	0.190	0.102	0.719	0.002(16)	0.006(4)	0.006(103)	non tumor-specific	exon_skip	yes
RGPD6_LS023	chr2:110562757|110563103:-	RGPD6	RANBP2 like and GRIP domain containing 6	protein coding gene	no	ENST00000329516.7;ENST00000330331.9	0.807	1.552	0.611	0.718(6882)	0.862(605)	0.005(95)	non tumor-specific	exon_skip	yes
ACTA1_LS001	chr1:229431642|229431721:-	ACTA1	actin alpha 1, skeletal muscle	protein coding gene	no	ENST00000366684.7;ENST00000366683.3	3.418	34.743	19.144	0.566(5425)	0.547(384)	0.955(16600)	non tumor-specific	alt_3prime;exon_skip	yes
AL391415.1_LS001	chr6:38714298|38715066:-	AL391415.1	-	lncRNA gene	no	ENST00000439844.2	0.144	0.016	0.677	0.003(28)	0.004(3)	0.004(65)	non tumor-specific	nAS	yes
BRD4_LS027	chr19:15269042|15272815:-	BRD4	bromodomain containing 4	protein coding gene	yes	ENST00000263377.6;ENST00000371835.8;ENST00000360016.9;ENST00000594841.5;ENST00000597315.5;ENST00000601071.1;ENST00000630599.2;ENST00000601941.1	46.134	27.327	34.835	0.977(9357)	0.991(696)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_RPL23AP22_UP_LS0011	chr1:194351947|194354305:-	RPL23AP22	ribosomal protein L23a pseudogene 22	pseudogene	no	.	1.168	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC082651.3_UP_LS0024	chr2:9810147|9814220:-	AC082651.3	-	lncRNA gene	no	.	2.968	0.151	0.000	0.006(53)	0.006(4)	0(0)	non tumor-specific	nAS	no
PAM_LS009	chr5:102864567|102865823:+	PAM	peptidylglycine alpha-amidating monooxygenase	protein coding gene	no	ENST00000511839.5	0.025	0.005	0.673	0.333(3194)	0.442(310)	0.075(1299)	non tumor-specific	nAS	yes
UN_RBFOX1_LS0033	chr16:5900790|5905971:-	RBFOX1	RNA binding fox-1 homolog 1	protein coding gene	no	.	3.010	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP671120.2_UP_LS0046	chr21:8209880|8253920:-	FP671120.2	-	lncRNA gene	no	.	667.931	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TNXB_LS044	chr6:32087874|32088785:-	TNXB	tenascin XB	protein coding gene	no	ENST00000613214.4	1.652	1.811	0.597	0.004(39)	0.033(23)	0.011(194)	non tumor-specific	nAS	yes
UN_PSMA1_LS0016	chr11:14506007|14507656:-	PSMA1	proteasome 20S subunit alpha 1	protein coding gene	no	.	8.934	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
EML5_LS037	chr14:88696952|88702446:-	EML5	EMAP like 5	protein coding gene	no	ENST00000554922.5;ENST00000380664.9;ENST00000553281.5	2.191	0.723	1.086	0.088(842)	0.164(115)	0.346(6017)	non tumor-specific	nAS	yes
UN_IFT122_LS0041	chr3:129512098|129513621:-	IFT122	intraflagellar transport 122	protein coding gene	no	.	2.221	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPY_LS0008	chr7:24285428|24289501:-	NPY	neuropeptide Y	protein coding gene	no	.	43.280	360.009	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL20A1_LS019	chr20:63312934|63313117:+	COL20A1	collagen type XX alpha 1 chain	protein coding gene	no	ENST00000358894.10;ENST00000479501.5;ENST00000422202.5	28.900	0.610	3.052	0.068(656)	0.011(8)	0.249(4335)	non tumor-specific	alt_3prime;exon_skip	yes
FAM206A_LS008	chr9:108936437|108939196:+	FAM206A	actin binding transcription modulator	protein coding gene	no	ENST00000322940.10;ENST00000445175.1	22.193	13.800	14.068	0.977(9358)	0.993(697)	0.977(16983)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SRRM2_LS021	chr16:2762210|2762601:+	SRRM2	serine/arginine repetitive matrix 2	protein coding gene	no	.;.	43.560	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
AL136988.2_LS002	chr1:230259763|230268303:-	AL136988.2	-	lncRNA gene	no	ENST00000440729.1	4.177	0.000	0.755	0.002(18)	0(0)	0.016(281)	non tumor-specific	nAS	yes
UN_SNTA1_LS0027	chr20:33410331|33412186:-	SNTA1	syntrophin alpha 1	protein coding gene	no	.	7.118	2.712	0.000	0.14(1339)	0.077(54)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
TOR1AIP1_LS014	chr1:179900167|179901302:+	TOR1AIP1	torsin 1A interacting protein 1	protein coding gene	no	ENST00000528443.6;ENST00000271583.7;ENST00000606911.6;ENST00000435319.8;ENST00000527391.5;ENST00000529091.5;ENST00000527867.5;ENST00000474875.5;ENST00000531726.5;ENST00000524653.1	57.147	53.268	47.195	0.973(9318)	0.989(694)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC003035.1_LS001	chrX:13980478|13988690:-	AC003035.1	-	lncRNA gene	no	ENST00000391359.2	0.151	0.040	0.731	0.057(548)	0.073(51)	0.089(1549)	non tumor-specific	nAS	yes
RPS15_LS015	chr19:1440253|1440349:+	RPS15	ribosomal protein S15	protein coding gene	no	ENST00000233609.8;ENST00000586686.6;ENST00000592588.6;ENST00000591032.1;ENST00000592623.5;ENST00000591804.6;ENST00000593052.5;ENST00000592700.2;ENST00000585665.2	1236.773	463.540	1975.657	0.915(8771)	0.907(637)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_REV3L_LS0044	chr6:111392972|111405465:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	.	6.725	0.228	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
AL031846.1_LS001	chr22:39091796|39092008:+	AL031846.1	-	pseudogene	no	ENST00000560933.5;ENST00000424436.1	0.643	0.253	1.032	0.317(3038)	0.268(188)	0.255(4425)	non tumor-specific	nAS	yes
ITIH4_LS025	chr3:52823741|52823823:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000441637.2;ENST00000491663.5;ENST00000537897.5	51.211	226.282	17.086	0.447(4282)	0.524(368)	0.969(16847)	non tumor-specific	intron_retention	yes
UN_SLC25A5P7_UP_LS0003	chr6:121453923|121480202:+	SLC25A5P7	solute carrier family 25 member 5 pseudogene 7	pseudogene	no	.	1.393	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC244205.1_LS0048	chr2:88860588|88861525:-	AC244205.1	-	lncRNA gene	no	.	52.103	26.171	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLC25A53_LS0053	chrX:104132694|104136816:-	SLC25A53	solute carrier family 25 member 53	protein coding gene	no	.	0.947	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
RECQL5_LS015	chr17:75631010|75631150:-	RECQL5	RecQ like helicase 5	protein coding gene	no	ENST00000443199.6;ENST00000423245.6;ENST00000317905.9;ENST00000580707.1	26.317	14.897	17.042	0.971(9300)	0.98(688)	0.978(17000)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TBRG4_LS032	chr7:45109287|45111877:-	TBRG4	transforming growth factor beta regulator 4	protein coding gene	no	ENST00000475893.1	0.195	0.099	0.660	0.272(2608)	0.232(163)	0.012(216)	non tumor-specific	nAS	yes
UN_MAPKAP1_LS0060	chr9:125542334|125545930:+	MAPKAP1	MAPK associated protein 1	protein coding gene	no	.	3.617	1.185	0.000	0.003(24)	0.009(6)	0(0)	non tumor-specific	nAS	no
COPS8_LS011	chr2:237089994|237093663:+	COPS8	COP9 signalosome subunit 8	protein coding gene	no	ENST00000470452.5	6.087	2.199	1.558	0.437(4186)	0.333(234)	0.748(12994)	non tumor-specific	alt_3prime;exon_skip	yes
ELN_LS063	chr7:74063695|74065694:+	ELN	small integral membrane protein 6	protein coding gene	no	ENST00000445912.5;ENST00000621115.4;ENST00000252034.11;ENST00000358929.8;ENST00000320492.11;ENST00000414324.5;ENST00000380562.8;ENST00000380575.8;ENST00000380584.8;ENST00000458204.5;ENST00000357036.9;ENST00000429192.5;ENST00000380553.8;ENST00000380576.9;ENST00000320399.10	62.630	51.509	106.552	0.895(8577)	0.994(698)	0.965(16772)	non tumor-specific	exon_skip;mutex_exons	yes
PNPLA7_LS021	chr9:137498245|137500691:-	PNPLA7	patatin like phospholipase domain containing 7	protein coding gene	no	ENST00000277531.8;ENST00000406427.5	5.533	6.841	16.096	0.521(4988)	0.906(636)	0.96(16691)	non tumor-specific	nAS	yes
UN_AHNAK_LS0647	chr11:62522152|62524883:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	1.740	2.775	0.000	0.002(23)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_MS4A4E_UP_LS0008	chr11:60507116|60527300:-	MS4A4E	membrane spanning 4-domains A4E	protein coding gene	no	.	2.106	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TSPOAP1-AS1_LS007	chr17:58337679|58346280:+	TSPOAP1-AS1	TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1	lncRNA gene	no	ENST00000580022.5	0.046	0.138	0.863	0.208(1991)	0.236(166)	0.25(4341)	non tumor-specific	nAS	yes
NPLOC4_LS054	chr17:81629805|81629864:-	NPLOC4	NPL4 homolog, ubiquitin recognition factor	protein coding gene	no	ENST00000625705.1	0.086	0.012	0.593	0.005(45)	0.001(1)	0.007(122)	non tumor-specific	nAS	yes
AC023886.1_LS003	chr4:112525309|112530382:+	AC023886.1	-	lncRNA gene	no	ENST00000504009.1	4.314	0.196	1.556	0.036(348)	0.031(22)	0.111(1931)	non tumor-specific	nAS	yes
MRPL3_LS008	chr3:131487740|131489981:-	MRPL3	mitochondrial ribosomal protein L3	protein coding gene	no	ENST00000264995.7;ENST00000511168.5;ENST00000425847.6;ENST00000507669.5;ENST00000506487.1;ENST00000512877.1	123.191	57.949	69.502	0.998(9559)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
CCDC171_LS019	chr9:15729798|15744273:+	CCDC171	coiled-coil domain containing 171	protein coding gene	no	ENST00000380701.7	2.932	1.460	1.686	0.271(2600)	0.429(301)	0.747(12986)	non tumor-specific	nAS	yes
CBWD3_LS006	chr9:68243280|68245213:+	CBWD3	COBW domain containing 3	protein coding gene	no	ENST00000611426.4;ENST00000377349.6;ENST00000615061.4;ENST00000622755.4	0.041	0.382	0.707	0.863(8265)	0.919(645)	0.057(990)	non tumor-specific	exon_skip	yes
UN_PTPRN_LS0017	chr2:219300170|219300375:+	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	.	3.176	0.276	0.000	0.056(540)	0.001(1)	0(0)	non tumor-specific	nAS	no
THSD4_LS006	chr15:71243096|71256613:+	THSD4	thrombospondin type 1 domain containing 4	protein coding gene	no	ENST00000355327.7	7.644	7.200	2.996	0.534(5119)	0.848(595)	0.731(12710)	non tumor-specific	exon_skip	yes
UN_LINC00615_UP_LS0008	chr12:90823727|90851587:+	LINC00615	long intergenic non-protein coding RNA 615	lncRNA gene	no	.	6.402	0.341	0.000	0.012(117)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC01197_LS0010	chr15:95288199|95288302:-	LINC01197	long intergenic non-protein coding RNA 1197	lncRNA gene	no	.	3.353	0.524	0.000	0.007(68)	0.009(6)	0(0)	non tumor-specific	nAS	no
AC011124.1_LS001	chr8:63466499|63469983:-	AC011124.1	-	lncRNA gene	no	ENST00000522086.1	0.153	0.000	0.811	0.001(9)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_CPB1_LS0013	chr3:148849009|148849328:-	CPB1	carboxypeptidase B1	protein coding gene	no	.	3.277	1.649	0.000	0.011(105)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC01322_UP_LS0053	chr3:164619440|164687628:+	LINC01322	long intergenic non-protein coding RNA 1322	lncRNA gene	no	.	4.244	1.249	0.000	0.055(530)	0.114(80)	0(0)	non tumor-specific	nAS	no
TEX35_LS011	chr1:178521264|178523302:+	TEX35	testis expressed 35	protein coding gene	no	ENST00000367639.1	2.771	0.093	0.664	0.003(24)	0.001(1)	0.014(236)	non tumor-specific	exon_skip	yes
TTLL7_LS039	chr1:83942679|83947124:-	TTLL7	tubulin tyrosine ligase like 7	protein coding gene	no	ENST00000480174.5;ENST00000477524.5;ENST00000260505.12;ENST00000485638.5;ENST00000610996.1	2.843	3.026	6.652	0.468(4482)	0.67(470)	0.889(15449)	non tumor-specific	exon_skip	yes
PRKCA_LS020	chr17:66741721|66742622:+	PRKCA	protein kinase C alpha	protein coding gene	yes	ENST00000413366.7;ENST00000284384.6	15.691	13.673	5.872	0.857(8213)	0.962(675)	0.95(16507)	non tumor-specific	nAS	yes
TSPEAR_LS006	chr21:44525839|44527292:-	TSPEAR	thrombospondin type laminin G domain and EAR repeats	protein coding gene	no	ENST00000613245.5;ENST00000323084.8;ENST00000642437.1;ENST00000397916.1	4.231	0.210	1.014	0.047(448)	0.053(37)	0.173(3004)	non tumor-specific	intron_retention	yes
UN_PPDPF_LS0045	chr20:63521782|63521841:-	PPDPF	pancreatic progenitor cell differentiation and proliferation factor	protein coding gene	no	.	33.489	3.195	0.000	0.005(46)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PRH1_LS0002	chr12:10825193|10847045:-	PRH1	proline rich protein HaeIII subfamily 1	protein coding gene	no	.	2.401	0.438	0.000	0.028(268)	0.02(14)	0(0)	non tumor-specific	nAS	no
TNNT1_LS003	chr19:55133674|55133887:-	TNNT1	troponin T1, slow skeletal type	protein coding gene	no	ENST00000586649.2	0.007	0.000	1.734	0.006(56)	0.01(7)	0.071(1231)	non tumor-specific	mutex_exons	yes
GMNN_LS008	chr6:24775824|24777222:+	GMNN	geminin DNA replication inhibitor	protein coding gene	yes	ENST00000476555.5	0.497	0.648	1.227	0.679(6503)	0.62(435)	0.428(7442)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_DDX42_LS0015	chr17:63816966|63817700:+	DDX42	DEAD-box helicase 42	protein coding gene	no	.	11.873	0.385	0.000	0.009(87)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
SULF1_LS001	chr8:69466950|69469254:+	SULF1	sulfatase 1	protein coding gene	no	ENST00000528286.1	0.069	0.003	0.643	0.019(182)	0.004(3)	0.04(697)	non tumor-specific	exon_skip	yes
UN_BMPR2_UP_LS0003	chr2:202363651|202367876:+	BMPR2	bone morphogenetic protein receptor type 2	protein coding gene	yes	.	2.887	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
GLUD1P2_LS001	chr10:46759160|46768209:-	GLUD1P2	glutamate dehydrogenase 1 pseudogene 2	pseudogene	no	ENST00000630097.2;ENST00000631118.2	2.014	1.015	2.265	0.286(2737)	0.345(242)	0.789(13721)	non tumor-specific	nAS	yes
UN_SMG7_LS0029	chr1:183544481|183544994:-	SMG7	SMG7 nonsense mediated mRNA decay factor	protein coding gene	no	.	1.679	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
DDO_LS003	chr6:110404950|110408334:-	DDO	D-aspartate oxidase	protein coding gene	no	ENST00000368924.7	6.421	6.149	2.410	0.617(5910)	0.916(643)	0.766(13309)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TMPRSS3_LS0011	chr21:42372680|42383052:+	TMPRSS3	transmembrane serine protease 4	protein coding gene	no	.	1.001	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MUC2_LS0120	chr11:1096662|1099196:-	MUC2	mucin 2, oligomeric mucus/gel-forming	protein coding gene	no	.	7.670	2.289	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	nAS	no
TREM1_LS007	chr6:41282751|41286607:-	TREM1	triggering receptor expressed on myeloid cells 1	protein coding gene	no	ENST00000589614.5;ENST00000244709.8;ENST00000334475.10;ENST00000591620.1;ENST00000586287.1	6.240	12.044	2.277	0.819(7851)	0.761(534)	0.677(11760)	non tumor-specific	alt_3prime	yes
UN_SULT1C2_LS0005	chr2:108294354|108300850:+	SULT1C2	sulfotransferase family 1C member 4	protein coding gene	no	.	6.185	2.034	0.000	0.019(181)	0.021(15)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
MIA2_LS016	chr14:39277065|39279337:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	ENST00000553728.1;ENST00000640607.1;ENST00000554392.5;ENST00000555716.5;ENST00000341749.7;ENST00000396165.8;ENST00000396158.6;ENST00000280083.7;ENST00000341502.9;ENST00000348007.7;ENST00000553352.1	17.826	19.716	12.753	0.956(9162)	0.989(694)	0.976(16959)	non tumor-specific	alt_5prime;exon_skip	yes
PXDN_LS007	chr2:1644752|1645921:-	PXDN	peroxidasin	protein coding gene	no	ENST00000477093.1	0.027	0.024	0.617	0.471(4510)	0.426(299)	0.035(600)	non tumor-specific	nAS	yes
UN_RNU7-53P_UP_LS0025	chr5:130811692|130818081:-	RNU7-53P	RNA, U7 small nuclear 53 pseudogene	small non-coding RNA gene	no	.	2.123	0.134	0.000	0.029(277)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC00630_LS0056	chrX:102877611|102878013:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	.	1.783	0.019	0.000	0.012(112)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SH3GL1_LS0078	chr19:4366570|4366926:-	SH3GL1	SH3 domain containing GRB2 like 1, endophilin A2	protein coding gene	no	.	36.007	2.132	0.000	0.007(63)	0.013(9)	0(0)	non tumor-specific	alt_3prime	no
UN_CCDC138_LS0011	chr2:108816043|108839185:+	CCDC138	coiled-coil domain containing 138	protein coding gene	no	.	1.985	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LOXHD1_LS0011	chr18:46638183|46639616:-	LOXHD1	lipoxygenase homology domains 1	protein coding gene	no	.	2.756	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
EIF4A1_LS040	chr17:7577916|7578342:+	EIF4A1	eukaryotic translation initiation factor 4A1	protein coding gene	no	ENST00000582746.5;ENST00000582746.5	135.574	61.790	1.600	0.243(2325)	0.345(242)	0.638(11084)	non tumor-specific	alt_5prime;exon_skip	yes
MTA3_LS016	chr2:42614194|42640173:+	MTA3	metastasis associated 1 family member 3	protein coding gene	no	ENST00000491314.1	0.061	0.022	0.746	0.627(6007)	0.641(450)	0.213(3695)	non tumor-specific	exon_skip	yes
UN_GRIK2_LS0020	chr6:101889754|101924601:+	GRIK2	glutamate ionotropic receptor kainate type subunit 5	protein coding gene	no	.	0.751	0.156	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CDK5RAP1_LS012	chr20:33372697|33387323:-	CDK5RAP1	CDK5 regulatory subunit associated protein 1	protein coding gene	no	ENST00000427097.5	0.109	0.042	0.619	0.012(114)	0.004(3)	0.014(248)	non tumor-specific	mutex_exons	yes
LINC02323_LS002	chr14:102550508|102554710:+	LINC02323	long intergenic non-protein coding RNA 2323	lncRNA gene	no	ENST00000559946.1	1.098	0.216	0.761	0.074(713)	0.046(32)	0.028(491)	non tumor-specific	nAS	yes
UN_FAM106A_LS0003	chr17:18519674|18532506:-	FAM106A	family with sequence similarity 106 member A	lncRNA gene	no	.	1.453	0.409	0.000	0.009(90)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_NEK7_LS0030	chr1:198292845|198292945:+	NEK7	NIMA related kinase 7	protein coding gene	no	.	3.097	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TXN2_LS0036	chr22:36467578|36467729:+	TXN2	thioredoxin 2	protein coding gene	no	.	2.168	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01159_LS002	chr2:104869950|104872246:-	LINC01159	long intergenic non-protein coding RNA 1159	lncRNA gene	no	ENST00000434764.1	1.010	0.934	2.718	0.201(1927)	0.219(154)	0.186(3234)	non tumor-specific	nAS	yes
NDUFB4_LS008	chr3:120596646|120601173:+	NDUFB4	NADH:ubiquinone oxidoreductase subunit B4	protein coding gene	no	.;.	93.326	31.627	0.000	0.027(262)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ACSL5_LS008	chr10:112404575|112404705:+	ACSL5	acyl-CoA synthetase long chain family member 5	protein coding gene	no	ENST00000354655.8;ENST00000479936.1;ENST00000393081.5;ENST00000356116.5;ENST00000433418.5;ENST00000354273.4	46.755	54.037	9.273	0.913(8746)	0.986(692)	0.963(16745)	non tumor-specific	nAS	yes
AC015845.1_LS001	chr17:57912481|57915016:+	AC015845.1	-	lncRNA gene	no	ENST00000580184.1	0.205	0.125	0.750	0.01(100)	0.01(7)	0.003(47)	non tumor-specific	nAS	yes
LINC02126_LS001	chr16:65142099|65175166:-	LINC02126	long intergenic non-protein coding RNA 2126	lncRNA gene	no	ENST00000563754.1	0.584	0.217	0.898	0.028(269)	0.063(44)	0.045(783)	non tumor-specific	nAS	yes
UN_LPP_LS0154	chr3:188882751|188883010:-	LPP	LIM domain containing preferred translocation partner in lipoma	protein coding gene	no	.	0.915	0.480	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0041	chr6:112591092|112591854:+	AL360085.1	-	pseudogene	no	.	1.797	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
AC104667.2_LS005	chr2:237591267|237591872:+	AC104667.2	-	lncRNA gene	no	ENST00000452801.1;ENST00000452801.1;ENST00000452801.1	2.921	1.883	1.459	0.47(4502)	0.604(424)	0.205(3572)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GORASP2_LS0016	chr2:170951458|170954655:+	GORASP2	golgi reassembly stacking protein 2	protein coding gene	no	.	6.001	0.902	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ALPK2_LS017	chr18:58544675|58578814:-	ALPK2	alpha kinase 2	protein coding gene	no	ENST00000587399.1	0.197	0.075	1.177	0.091(872)	0.105(74)	0.128(2217)	non tumor-specific	exon_skip	yes
UN_KYAT1_LS0040	chr9:128847643|128881903:-	KYAT1	kynurenine aminotransferase 1	protein coding gene	no	.	0.756	0.023	0.000	0.006(58)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TMEM8A_LS0099	chr16:383429|386763:+	TMEM8A	post-glycosylphosphatidylinositol attachment to proteins 6	protein coding gene	no	.	1.517	0.690	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
DNAJC1_LS015	chr10:21920963|21929040:-	DNAJC1	DnaJ heat shock protein family (Hsp40) member C1	protein coding gene	no	ENST00000476103.3;ENST00000376946.2	0.136	0.136	1.129	0.6(5746)	0.564(396)	0.54(9392)	non tumor-specific	exon_skip	yes
HSPA4L_LS012	chr4:127805224|127805687:+	HSPA4L	heat shock protein family A (Hsp70) member 4 like	protein coding gene	no	ENST00000508776.5;ENST00000296464.8;ENST00000508549.5;ENST00000505726.1	9.830	5.910	4.148	0.714(6839)	0.815(572)	0.869(15101)	non tumor-specific	nAS	yes
UN_RIPK2_UP_LS0002	chr8:89157172|89166646:+	RIPK2	receptor interacting serine/threonine kinase 2	protein coding gene	no	.	1.748	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC151_LS013	chr19:11426784|11426873:-	CCDC151	coiled-coil domain containing 151	protein coding gene	no	ENST00000356392.8;ENST00000591345.5;ENST00000586836.5	2.806	2.605	1.464	0.247(2368)	0.332(233)	0.397(6900)	non tumor-specific	exon_skip	yes
UN_RHBDF1_LS0036	chr16:65039|72509:-	RHBDF1	rhomboid 5 homolog 1	protein coding gene	no	.	0.862	0.216	0.000	0.029(282)	0.028(20)	0(0)	non tumor-specific	alt_5prime	no
UN_VEGFA_LS0024	chr6:43773133|43774341:+	VEGFA	vascular endothelial growth factor A	protein coding gene	yes	.	2.698	0.256	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_MRPL20_UP_LS0004	chr1:1413951|1414663:-	MRPL20	mitochondrial ribosomal protein L20	protein coding gene	no	.	2.424	0.273	0.000	0.021(202)	0.004(3)	0(0)	non tumor-specific	nAS	no
MTMR1_LS021	chrX:150730210|150730525:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000493995.6;ENST00000485376.5;ENST00000370390.7;ENST00000542156.5;ENST00000445323.6;ENST00000488357.1;ENST00000493480.1	17.484	10.668	12.093	0.953(9129)	0.981(689)	0.974(16931)	non tumor-specific	nAS	yes
RIF1_LS019	chr2:151437351|151438684:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000444746.6;ENST00000453091.6;ENST00000428287.6;ENST00000243326.9;ENST00000414861.6;ENST00000430328.6	8.394	4.592	4.836	0.705(6759)	0.821(576)	0.871(15139)	non tumor-specific	nAS	yes
ERN2_LS039	chr16:23709270|23710172:-	ERN2	endoplasmic reticulum to nucleus signaling 2	protein coding gene	no	ENST00000562562.1	3.922	0.236	3.104	0.114(1092)	0.093(65)	0.086(1488)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SPOUT1_UP_LS0002	chr9:128830005|128833227:-	SPOUT1	SPOUT domain containing methyltransferase 1	protein coding gene	no	.	5.129	0.062	0.000	0.013(122)	0.003(2)	0(0)	non tumor-specific	nAS	no
SERINC2_LS023	chr1:31423854|31424683:+	SERINC2	serine incorporator 2	protein coding gene	no	ENST00000373710.5;ENST00000536859.5;ENST00000487207.5;ENST00000373709.7;ENST00000491976.1;ENST00000536384.2	138.412	122.449	11.393	0.975(9345)	0.981(689)	0.921(16003)	non tumor-specific	exon_skip	yes
UN_FLNB_LS0120	chr3:58169793|58170554:+	FLNB	filamin B	protein coding gene	no	.	20.320	2.990	0.000	0.013(120)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
UN_TUBGCP4_LS0011	chr15:43383504|43385394:+	TUBGCP4	tubulin gamma complex associated protein 4	protein coding gene	no	.	0.417	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	exon_skip	no
SUPT20H_LS008	chr13:37010655|37012192:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000484078.5;ENST00000490716.5;ENST00000469488.6;ENST00000350612.10	20.387	7.262	18.191	0.98(9392)	0.967(679)	0.978(17004)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CBWD4P_UP_LS0022	chr9:65481967|65485005:-	CBWD4P	COBW domain containing 4, pseudogene	pseudogene	no	.	2.253	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC183_LS012	chr9:136806238|136806504:+	CCDC183	coiled-coil domain containing 183	protein coding gene	no	ENST00000479371.5;ENST00000338005.6;ENST00000496839.5	1.409	0.367	1.531	0.274(2622)	0.272(191)	0.61(10602)	non tumor-specific	intron_retention	yes
UN_CASD1_LS0002	chr7:94518323|94522845:+	CASD1	CAS1 domain containing 1	protein coding gene	no	.	1.906	0.971	0.000	0.031(294)	0.048(34)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FAIM2_LS0031	chr12:49891774|49891955:-	FAIM2	Fas apoptotic inhibitory molecule 2	protein coding gene	no	.	1.474	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
MSRA_LS010	chr8:10245223|10250423:+	MSRA	methionine sulfoxide reductase A	protein coding gene	no	ENST00000521209.6	0.353	0.480	1.010	0.342(3273)	0.449(315)	0.318(5521)	non tumor-specific	alt_3prime	yes
MICALL2_LS016	chr7:1436856|1437535:-	MICALL2	MICAL like 2	protein coding gene	no	ENST00000472100.5;ENST00000467394.5;ENST00000471899.5;ENST00000479007.5;ENST00000413446.5;ENST00000297508.7;ENST00000487187.1	28.145	15.335	39.418	0.991(9499)	0.993(697)	0.973(16913)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UBAP2_LS004	chr9:33923293|33923379:-	UBAP2	ubiquitin associated protein 2	protein coding gene	no	ENST00000379239.8;ENST00000379238.5;ENST00000360802.5;ENST00000379235.5;ENST00000629575.2	62.527	29.253	34.634	0.99(9487)	0.993(697)	0.978(17008)	non tumor-specific	alt_3prime;intron_retention	yes
KCCAT333_LS002	chr7:17408128|17439667:+	KCCAT333	-	lncRNA gene	no	ENST00000635900.1;ENST00000636703.1	2.950	0.420	0.696	0.019(183)	0.007(5)	0.003(60)	non tumor-specific	nAS	yes
DIS3L2_LS002	chr2:231961765|232014848:+	DIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein coding gene	no	ENST00000441279.5	0.232	0.093	0.659	0.176(1686)	0.181(127)	0.011(188)	non tumor-specific	alt_3prime;exon_skip	yes
AC006042.2_LS001	chr7:7958618|7969772:-	AC006042.2	-	lncRNA gene	no	ENST00000428660.1	0.112	0.109	0.775	0.238(2282)	0.402(282)	0.14(2441)	non tumor-specific	nAS	yes
UN_RB1_LS0115	chr13:48581992|48599302:+	RB1	RB transcriptional corepressor 1	protein coding gene	yes	.	6.612	0.438	0.000	0.062(590)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_DKFZP434K028_LS0003	chr11:61752131|61755635:-	DKFZP434K028	-	lncRNA gene	no	.	4.052	1.001	0.000	0.041(390)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_NUP43_LS0027	chr6:149727198|149730686:-	NUP43	nucleoporin 43	protein coding gene	no	.	2.242	0.399	0.000	0.006(57)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RANBP2_LS0034	chr2:108773046|108773163:+	RANBP2	RAN binding protein 2	protein coding gene	no	.	1.781	0.957	0.000	0.004(38)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
STXBP5-AS1_LS024	chr6:147173948|147204413:-	STXBP5-AS1	STXBP5 antisense RNA 1	lncRNA gene	no	ENST00000427394.5;ENST00000367477.7	1.383	0.035	1.010	0.009(89)	0.007(5)	0.524(9108)	non tumor-specific	nAS	yes
CCND3_LS007	chr6:41937394|42030009:-	CCND3	cyclin D3	protein coding gene	no	ENST00000616010.4;ENST00000508143.5;ENST00000505884.5	0.039	0.589	0.697	0.28(2681)	0.34(239)	0.074(1294)	non tumor-specific	exon_skip;mutex_exons	yes
AC034245.1_LS001	chr5:56314848|56321115:-	AC034245.1	-	lncRNA gene	no	ENST00000504349.1	0.317	0.013	0.715	0.008(77)	0.006(4)	0.001(21)	non tumor-specific	nAS	yes
UN_AC108058.1_UP_LS0005	chr2:105347788|105349251:+	AC108058.1	-	lncRNA gene	no	.	1.100	0.046	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZNF559-ZNF177_LS007	chr19:9324780|9338494:+	ZNF559-ZNF177	ZNF559-ZNF177 readthrough	protein coding gene	no	ENST00000605071.5;ENST00000541595.6	0.113	0.268	1.399	0.696(6667)	0.803(564)	0.665(11557)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PCNPP4_UP_LS0008	chrX:75746074|75747034:-	PCNPP4	PEST containing nuclear protein pseudogene 4	pseudogene	no	.	0.113	0.002	0.000	0.002(21)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_MYLK-AS2_UP_LS0002	chr3:123584735|123585647:+	MYLK-AS2	MYLK antisense RNA 2	lncRNA gene	no	.	1.327	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNFT2_LS0030	chr12:116833941|116836181:+	RNFT2	ring finger protein, transmembrane 2	protein coding gene	no	.	0.317	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	exon_skip	no
OXNAD1_LS021	chr3:16348032|16349176:+	OXNAD1	oxidoreductase NAD binding domain containing 1	protein coding gene	no	ENST00000607329.1	0.337	0.065	0.773	0.165(1585)	0.125(88)	0.177(3083)	non tumor-specific	exon_skip;intron_retention	yes
UN_LYST_LS0012	chr1:235712197|235712960:-	LYST	lysosomal trafficking regulator	protein coding gene	no	.	0.719	0.095	0.000	0.013(120)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_THOC5_LS0008	chr22:29517366|29517487:-	THOC5	THO complex 5	protein coding gene	no	.	3.364	0.379	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_CTIF_LS0034	chr18:48761689|48805836:+	CTIF	cap binding complex dependent translation initiation factor	protein coding gene	no	.	2.724	0.059	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
RNF183_LS008	chr9:113301855|113302195:-	RNF183	ring finger protein 183	protein coding gene	no	.;.;.	1.802	0.433	0.000	0.015(139)	0.013(9)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IL18BP_LS0024	chr11:72002030|72002090:-	IL18BP	interleukin 18 binding protein	protein coding gene	no	.	3.212	0.456	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NBL1_LS0127	chr1:19658301|19658349:-	NBL1	NBL1, DAN family BMP antagonist	protein coding gene	no	.	3.953	0.817	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
ATP8B3_LS012	chr19:1789989|1790757:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	ENST00000310127.10;ENST00000531925.5;ENST00000525591.5	1.077	0.106	0.759	0.045(427)	0.006(4)	0.053(918)	non tumor-specific	exon_skip	yes
NFRKB_LS015	chr11:129878355|129878464:-	NFRKB	nuclear factor related to kappaB binding protein	protein coding gene	no	ENST00000446488.7;ENST00000524794.5;ENST00000524746.5	19.146	12.119	16.625	0.946(9064)	0.976(685)	0.976(16965)	non tumor-specific	alt_3prime	yes
C1QTNF12_LS008	chr1:1244497|1246514:-	C1QTNF12	C1q and TNF related 12	protein coding gene	no	ENST00000330388.2	1.705	0.189	1.134	0.327(3134)	0.155(109)	0.317(5505)	non tumor-specific	nAS	yes
UN_ANPEP_LS0059	chr15:89802593|89803239:-	ANPEP	alanyl aminopeptidase, membrane	protein coding gene	no	.	2.985	0.357	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_URI1_LS0034	chr19:30015231|30015536:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	.	4.596	0.346	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SEC31A_LS057	chr4:82878918|82880799:-	SEC31A	SEC31 homolog A, COPII coat complex component	protein coding gene	no	ENST00000507340.5	0.363	0.467	2.137	0.617(5913)	0.654(459)	0.798(13870)	non tumor-specific	alt_3prime;exon_skip	yes
SPTBN1_LS026	chr2:54646475|54647131:+	SPTBN1	spectrin beta, non-erythrocytic 1	protein coding gene	yes	ENST00000356805.8;ENST00000615901.4;ENST00000333896.5	192.161	206.932	162.690	0.99(9489)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime	yes
UN_ADH6_UP_LS0013	chr4:99286988|99318785:-	ADH6	alcohol dehydrogenase 6 (class V)	protein coding gene	no	.	51.587	127.957	0.000	0.01(99)	0.088(62)	0(0)	non tumor-specific	nAS	no
UN_CSF3R_LS0032	chr1:36475673|36475769:-	CSF3R	colony stimulating factor 3 receptor	protein coding gene	yes	.	6.503	2.266	0.000	0.007(68)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
AKAP14_LS003	chrX:119903392|119903495:+	AKAP14	A-kinase anchoring protein 14	protein coding gene	no	ENST00000371425.8;ENST00000371431.7;ENST00000371422.5;ENST00000334356.2	1.213	1.955	1.187	0.197(1887)	0.192(135)	0.232(4036)	non tumor-specific	nAS	yes
VWA5B1_LS009	chr1:20317675|20318590:+	VWA5B1	von Willebrand factor A domain containing 5B1	protein coding gene	no	ENST00000485375.6;ENST00000375079.6;ENST00000289815.12	3.098	0.957	1.097	0.039(375)	0.138(97)	0.1(1730)	non tumor-specific	alt_3prime	yes
UN_MTMR10_LS0012	chr15:30958951|30960881:-	MTMR10	myotubularin related protein 10	protein coding gene	no	.	0.602	0.399	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
DTNBP1_LS011	chr6:15627475|15637744:-	DTNBP1	dystrobrevin binding protein 1	protein coding gene	no	ENST00000344537.9;ENST00000510395.5;ENST00000622898.4;ENST00000355917.7;ENST00000515875.5;ENST00000513680.5;ENST00000338950.9;ENST00000506844.1;ENST00000511762.2	49.984	30.260	36.967	0.994(9526)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_GPSM3_LS0023	chr6:32192599|32193041:-	GPSM3	G protein signaling modulator 3	protein coding gene	no	.	1.411	0.023	0.000	0.007(63)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRMT10B_LS015	chr9:37768228|37769941:+	TRMT10B	tRNA methyltransferase 10B	protein coding gene	no	ENST00000377753.6;ENST00000488673.6;ENST00000377754.6;ENST00000297994.3	7.771	5.116	11.994	0.946(9066)	0.96(674)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip	yes
ALDH1L1_LS030	chr3:126153581|126154554:-	ALDH1L1	aldehyde dehydrogenase 1 family member L1	protein coding gene	no	ENST00000455064.6;ENST00000273450.7;ENST00000472186.5;ENST00000452905.6;ENST00000393434.6;ENST00000393431.6;ENST00000476245.5;ENST00000473607.5;ENST00000413612.5;ENST00000484724.5;ENST00000493803.5	33.498	66.605	17.433	0.569(5453)	0.829(582)	0.883(15349)	non tumor-specific	exon_skip	yes
UN_AC007099.2_UP_LS0006	chr2:75209277|75276510:+	AC007099.2	-	lncRNA gene	no	.	1.686	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CHCHD3P1_UP_LS0009	chr10:8591872|8593540:+	CHCHD3P1	coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1	pseudogene	no	.	4.906	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LMTK3_LS016	chr19:48510592|48511501:-	LMTK3	lemur tyrosine kinase 3	protein coding gene	no	ENST00000600059.5;ENST00000270238.3;ENST00000650440.1	3.556	3.204	2.094	0.11(1051)	0.132(93)	0.406(7053)	non tumor-specific	exon_skip	yes
GOLGA2P5_LS012	chr12:100161869|100170937:-	GOLGA2P5	GOLGA2 pseudogene 5	pseudogene	no	ENST00000397112.8	0.037	0.012	0.750	0.05(480)	0.053(37)	0.006(111)	non tumor-specific	nAS	yes
UN_RFTN2_LS0025	chr2:197644711|197646483:-	RFTN2	raftlin family member 2	protein coding gene	no	.	2.782	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF226_LS011	chr19:44165613|44165757:+	ZNF226	zinc finger protein 226	protein coding gene	no	ENST00000589160.5;ENST00000588742.5;ENST00000588127.5	0.237	0.255	1.839	0.809(7750)	0.873(613)	0.807(14023)	non tumor-specific	exon_skip;intron_retention	yes
UN_EMSY_LS0027	chr11:76539640|76541830:+	EMSY	EMSY transcriptional repressor, BRCA2 interacting	protein coding gene	yes	.	0.979	0.065	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_PIK3R4_LS0003	chr3:130679571|130680613:-	PIK3R4	phosphoinositide-3-kinase regulatory subunit 4	protein coding gene	no	.	1.054	0.080	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RNU6-1254P_UP_LS0022	chr7:66886455|66890251:+	RNU6-1254P	RNA, U6 small nuclear 1254, pseudogene	small non-coding RNA gene	no	.	3.683	1.739	0.000	0.243(2329)	0.209(147)	0(0)	non tumor-specific	nAS	no
AL354714.1_LS002	chr1:160933326|160934310:+	AL354714.1	-	lncRNA gene	no	ENST00000356006.3	4.337	0.000	0.662	0.001(11)	0(0)	0.009(151)	non tumor-specific	nAS	yes
UN_BECN1_LS0006	chr17:42810911|42811683:-	BECN1	beclin 1	protein coding gene	yes	.	5.848	0.924	0.000	0.005(48)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ANLN_LS0002	chr7:36396419|36399219:+	ANLN	anillin actin binding protein	protein coding gene	no	.	1.479	0.174	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AL024498.2_LS0083	chr6:10902762|10907542:+	AL024498.2	-	protein coding gene	no	.	0.917	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DZIP3_LS0026	chr3:108675873|108677483:+	DZIP3	DAZ interacting zinc finger protein 3	protein coding gene	no	.	4.687	0.132	0.000	0.01(99)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_IL15RA_UP_LS0001	chr10:5978195|5978269:-	IL15RA	interleukin 15 receptor subunit alpha	protein coding gene	no	.	1.200	0.663	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RCC1_LS0003	chr1:28506084|28516725:+	RCC1	regulator of chromosome condensation 1	protein coding gene	no	.	6.206	0.050	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CYP3A7_LS005	chr7:99710892|99713469:-	CYP3A7	cytochrome P450 family 3 subfamily A member 7	protein coding gene	no	ENST00000620220.4;ENST00000477357.5;ENST00000336374.3	6.868	8.950	1.108	0.145(1387)	0.393(276)	0.219(3811)	non tumor-specific	nAS	yes
UN_RNU4-52P_UP_LS0002	chrX:49065845|49071974:+	RNU4-52P	RNA, U4 small nuclear 52, pseudogene	small non-coding RNA gene	no	.	2.114	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC060766.1_UP_LS0006	chr17:35433062|35441563:-	AC060766.1	-	pseudogene	no	.	0.385	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
SPEM3_LS001	chr17:7429040|7429190:+	SPEM3	SPEM family member 3	protein coding gene	no	ENST00000636696.2	1.362	0.000	0.723	0(2)	0(0)	0.009(156)	non tumor-specific	nAS	yes
TSR1_LS004	chr17:2325420|2329343:-	TSR1	TSR1 ribosome maturation factor	protein coding gene	no	ENST00000301364.9	75.534	34.986	33.850	0.996(9544)	0.997(700)	0.979(17009)	non tumor-specific	exon_skip	yes
BRD8_LS043	chr5:138168688|138169222:-	BRD8	bromodomain containing 8	protein coding gene	no	ENST00000441656.5;ENST00000454473.5;ENST00000418329.5;ENST00000230901.9;ENST00000411594.6;ENST00000441656.5;ENST00000454473.5;ENST00000418329.5;ENST00000230901.9;ENST00000411594.6	18.103	11.640	20.182	0.975(9338)	0.99(695)	0.978(17006)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RUBCNL_LS006	chr13:46350351|46356432:-	RUBCNL	rubicon like autophagy enhancer	protein coding gene	no	ENST00000378797.6;ENST00000378781.7;ENST00000429979.5;ENST00000389908.7;ENST00000378784.8;ENST00000441284.5;ENST00000378787.7;ENST00000409879.6;ENST00000631139.2	18.434	5.284	4.019	0.691(6625)	0.65(456)	0.879(15282)	non tumor-specific	alt_3prime;exon_skip	yes
UN_IL12A-AS1_LS0003	chr3:159998105|160038910:-	IL12A-AS1	IL12A antisense RNA 1	lncRNA gene	no	.	2.026	0.341	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
IDH3A_LS025	chr15:78157631|78161581:+	IDH3A	isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha	protein coding gene	no	ENST00000558933.5;ENST00000559865.5;ENST00000558509.5;ENST00000559803.5	0.074	0.054	3.270	0.843(8074)	0.897(630)	0.898(15610)	non tumor-specific	exon_skip	yes
TLDC2_LS005	chr20:36879193|36880655:+	TLDC2	TBC/LysM-associated domain containing 2	protein coding gene	no	ENST00000602922.5;ENST00000217320.7	4.611	3.108	0.851	0.235(2250)	0.244(171)	0.184(3197)	non tumor-specific	exon_skip	yes
AL022396.1_LS001	chr6:14004980|14006577:+	AL022396.1	-	lncRNA gene	no	ENST00000427011.1	0.112	0.001	0.849	0.002(23)	0.004(3)	0(6)	non tumor-specific	nAS	yes
UN_NDRG1_LS0094	chr8:133238382|133238646:+	NDRG1	N-myc downstream regulated 1	protein coding gene	yes	.	5.511	0.000	0.000	0.006(61)	0(0)	0(0)	non tumor-specific	nAS	no
ARHGAP27_LS018	chr17:45398047|45401580:-	ARHGAP27	Rho GTPase activating protein 27	protein coding gene	no	ENST00000526484.5	0.193	0.615	0.799	0.488(4677)	0.587(412)	0.264(4589)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IL1R2_LS0013	chr2:102016051|102019660:+	IL1R2	interleukin 1 receptor type 2	protein coding gene	no	.	8.389	4.564	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
STXBP2_LS022	chr19:7644934|7645197:+	STXBP2	syntaxin binding protein 2	protein coding gene	no	ENST00000597068.5	0.081	0.162	1.984	0.13(1241)	0.124(87)	0.57(9902)	non tumor-specific	alt_3prime;exon_skip	yes
PPY_LS008	chr17:43941654|43942421:-	PPY	pancreatic polypeptide	protein coding gene	no	ENST00000591703.5;ENST00000225992.7;ENST00000591703.5;ENST00000225992.7	11.180	3.155	1.971	0.032(303)	0.135(95)	0.054(931)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC00856_LS0044	chr10:78331964|78334328:+	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	.	2.997	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CRLF1_LS0019	chr19:18573748|18574842:+	CRLF1	cytokine receptor like factor 1	protein coding gene	no	.	144.144	21.298	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TTC17_LS015	chr11:43400048|43401446:+	TTC17	tetratricopeptide repeat domain 17	protein coding gene	no	ENST00000299240.10;ENST00000039989.8;ENST00000526774.5;ENST00000525029.1	32.379	20.550	26.108	0.992(9508)	0.997(700)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_ANKRD11_LS0126	chr16:89299467|89300242:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	.	4.466	1.144	0.000	0.015(143)	0.014(10)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TDRD9_LS026	chr14:104022330|104024569:+	TDRD9	tudor domain containing 9	protein coding gene	no	ENST00000409874.8;ENST00000557332.5;ENST00000339063.6	7.996	1.837	1.871	0.157(1506)	0.39(274)	0.664(11535)	non tumor-specific	exon_skip	yes
ZNF638_LS061	chr2:71408247|71418602:+	ZNF638	zinc finger protein 638	protein coding gene	no	ENST00000264447.8;ENST00000409544.5;ENST00000487638.5;ENST00000494241.5;ENST00000264447.8;ENST00000409544.5;ENST00000487638.5;ENST00000494241.5	40.348	28.356	28.164	0.971(9306)	0.989(694)	0.977(16976)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SEMA4D_LS0071	chr9:89455953|89475485:-	SEMA4D	semaphorin 4D	protein coding gene	no	.	1.634	0.628	0.000	0.08(769)	0.064(45)	0(0)	non tumor-specific	exon_skip	no
ALDH7A1_LS038	chr5:126584012|126592664:-	ALDH7A1	aldehyde dehydrogenase 7 family member A1	protein coding gene	no	ENST00000637782.1;ENST00000635851.1;ENST00000409134.7;ENST00000636872.1;ENST00000637206.1;ENST00000637272.1;ENST00000636879.1;ENST00000636808.1;ENST00000553117.5;ENST00000458249.6;ENST00000636225.1;ENST00000636062.1;ENST00000637964.1;ENST00000413020.6;ENST00000511266.6;ENST00000412186.2;ENST00000636190.1;ENST00000479989.6	96.742	88.232	43.953	0.984(9430)	0.997(700)	0.962(16715)	non tumor-specific	exon_skip	yes
UN_C1orf159_LS0015	chr1:1084071|1084353:-	C1orf159	chromosome 1 open reading frame 159	protein coding gene	no	.	8.462	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
RAB40B_LS007	chr17:82658562|82659580:-	RAB40B	RAB40B, member RAS oncogene family	protein coding gene	no	ENST00000538809.6	0.165	0.163	1.038	0.62(5936)	0.714(501)	0.52(9039)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
WDR49_LS019	chr3:167566894|167575100:-	WDR49	WD repeat domain 49	protein coding gene	no	ENST00000476376.5	0.004	0.001	0.819	0.005(44)	0.003(2)	0.007(129)	non tumor-specific	nAS	yes
MINK1_LS045	chr17:4896342|4896429:+	MINK1	misshapen like kinase 1	protein coding gene	no	ENST00000355280.10;ENST00000572330.5;ENST00000347992.11;ENST00000574453.5;ENST00000453408.7;ENST00000571207.5;ENST00000574871.1;ENST00000576037.1	148.655	113.439	137.777	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
IGHV3-22_LS001	chr14:106258074|106258178:-	IGHV3-22	immunoglobulin heavy variable 3-22 (pseudogene)	no	no	ENST00000520721.1	0.573	1.688	0.930	0.748(7165)	0.821(576)	0.071(1233)	non tumor-specific	nAS	yes
AC004884.2_LS001	chr7:105304431|105306252:+	AC004884.2	-	lncRNA gene	no	ENST00000476569.1	0.181	0.035	0.897	0.039(376)	0.021(15)	0.018(305)	non tumor-specific	nAS	yes
DGKA_LS054	chr12:55942083|55942174:+	DGKA	diacylglycerol kinase alpha	protein coding gene	no	ENST00000331886.9;ENST00000555218.5;ENST00000553084.5;ENST00000394147.5;ENST00000551156.5;ENST00000402956.7;ENST00000551296.5;ENST00000552478.5;ENST00000549079.6;ENST00000551739.5;ENST00000552903.2	39.336	19.235	44.334	0.976(9355)	0.974(684)	0.979(17009)	non tumor-specific	intron_retention	yes
MTX3_LS002	chr5:79983794|79985571:-	MTX3	metaxin 3	protein coding gene	no	ENST00000512528.2;ENST00000512560.5	1.882	1.370	1.456	0.52(4978)	0.635(446)	0.655(11387)	non tumor-specific	exon_skip	yes
CAMKV_LS003	chr3:49859881|49860171:-	CAMKV	CaM kinase like vesicle associated	protein coding gene	no	ENST00000475665.5;ENST00000296471.11;ENST00000488336.5;ENST00000477224.5;ENST00000620470.4;ENST00000487726.5;ENST00000467248.5;ENST00000466940.5;ENST00000478149.5	2.447	10.986	4.923	0.172(1649)	0.017(12)	0.306(5317)	non tumor-specific	nAS	yes
GRIK1_LS005	chr21:29553704|29555052:-	GRIK1	glutamate ionotropic receptor kainate type subunit 1	protein coding gene	no	ENST00000399907.5;ENST00000399909.5	5.017	0.050	0.922	0.058(558)	0.047(33)	0.139(2409)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GALNT18_LS0006	chr11:11297911|11298793:+	GALNT18	polypeptide N-acetylgalactosaminyltransferase 18	protein coding gene	no	.	4.292	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
XPNPEP1_LS025	chr10:109884148|109886246:-	XPNPEP1	X-prolyl aminopeptidase 1	protein coding gene	no	ENST00000488118.6;ENST00000369683.5;ENST00000502935.5;ENST00000322238.12;ENST00000460523.5;ENST00000403138.6;ENST00000430337.5;ENST00000443078.5;ENST00000508059.5;ENST00000506777.5;ENST00000505255.5	41.139	27.966	41.877	0.98(9390)	0.993(697)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GAS6_LS0128	chr13:113838344|113839084:+	GAS6	growth arrest specific 6	protein coding gene	no	.	5.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PCNX2_LS0009	chr1:232999179|232999275:-	PCNX2	pecanex 2	protein coding gene	no	.	6.793	0.232	0.000	0.006(54)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
SEC22C_LS026	chr3:42569073|42579477:-	SEC22C	SEC22 homolog C, vesicle trafficking protein	protein coding gene	no	ENST00000456222.1	0.007	0.020	0.789	0.351(3367)	0.477(335)	0.299(5199)	non tumor-specific	exon_skip;mutex_exons	yes
UN_TEAD3_LS0039	chr6:35474323|35474427:+	TEAD3	TEA domain transcription factor 3	protein coding gene	no	.	1.007	0.962	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CASP5_UP_LS0080	chr11:105035129|105044413:-	CASP5	caspase 5	protein coding gene	yes	.	39.699	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SOGA1_LS013	chr20:36812844|36815126:-	SOGA1	suppressor of glucose, autophagy associated 1	protein coding gene	no	ENST00000237536.8;ENST00000279034.10;ENST00000465671.1	8.938	5.682	4.234	0.758(7265)	0.832(584)	0.88(15304)	non tumor-specific	exon_skip	yes
MAN2A2_LS027	chr15:90911238|90911367:+	MAN2A2	mannosidase alpha class 2A member 2	protein coding gene	no	ENST00000558171.1	0.033	0.115	0.738	0.182(1741)	0.175(123)	0.257(4472)	non tumor-specific	alt_3prime;intron_retention	yes
UN_AP003472.2_UP_LS0002	chr8:100533311|100565574:-	AP003472.2	-	lncRNA gene	no	.	3.877	1.748	0.000	0.004(38)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_CERS5_LS0016	chr12:50143691|50165026:+	CERS5	ceramide synthase 5	protein coding gene	no	.	3.498	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NFATC2IP_LS0011	chr16:28954721|28955978:+	NFATC2IP	nuclear factor of activated T cells 2 interacting protein	protein coding gene	no	.	9.259	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TEX41_LS009	chr2:144708308|144766370:+	TEX41	testis expressed 41	lncRNA gene	no	ENST00000630246.2	0.001	0.000	0.685	0.001(9)	0(0)	0(1)	non tumor-specific	nAS	yes
CLIP3_LS014	chr19:36032513|36032724:-	CLIP3	CAP-Gly domain containing linker protein 3	protein coding gene	no	ENST00000592017.5	11.741	11.344	0.767	0.088(843)	0.057(40)	0.138(2405)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LRRC8A_LS0124	chr9:128913087|128914993:-	LRRC8A	leucine rich repeat containing 8 VRAC subunit A	protein coding gene	no	.	2.526	1.391	0.000	0.005(50)	0.013(9)	0(0)	non tumor-specific	nAS	no
CALM1_LS005	chr14:90397233|90400065:+	CALM1	calmodulin 1	protein coding gene	no	ENST00000356978.8;ENST00000557123.5;ENST00000556757.5;ENST00000553995.5;ENST00000626705.2;ENST00000553630.1	170.775	156.025	377.551	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
ABCC12_LS023	chr16:48107425|48108440:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	ENST00000311303.7;ENST00000534418.5;ENST00000529084.5;ENST00000497206.6;ENST00000532494.5;ENST00000529504.5	4.173	0.028	0.721	0.004(38)	0.001(1)	0.007(126)	non tumor-specific	exon_skip;intron_retention	yes
UN_KCTD3_LS0011	chr1:215577728|215577929:+	KCTD3	potassium channel tetramerization domain containing 3	protein coding gene	no	.	3.966	1.088	0.000	0.051(485)	0.047(33)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MAPKAPK2_LS0015	chr1:206731262|206731645:+	MAPKAPK2	MAPK activated protein kinase 2	protein coding gene	no	.	28.367	7.653	0.000	0.018(173)	0.017(12)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GTF2IP20_LS0044	chr1:223952442|223952668:-	GTF2IP20	general transcription factor IIi pseudogene 20	pseudogene	no	.	4.293	1.483	0.000	0.053(505)	0.037(26)	0(0)	non tumor-specific	nAS	no
MARCH1_LS023	chr4:164111662|164234833:-	MARCH1	membrane associated ring-CH-type finger 1	protein coding gene	no	ENST00000508725.5	0.873	0.000	0.823	0.01(99)	0.004(3)	0.004(75)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GATD3B_LS0030	chr21:5102097|5102312:+	GATD3B	glutamine amidotransferase like class 1 domain containing 3B	protein coding gene	no	.	1.005	0.089	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UVRAG_LS015	chr11:75980119|75983387:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	ENST00000532130.1	0.022	0.012	0.583	0.323(3099)	0.39(274)	0.02(356)	non tumor-specific	nAS	yes
SYNE2_LS089	chr14:64137983|64139941:+	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	ENST00000358025.7;ENST00000344113.8;ENST00000554584.5;ENST00000555002.5;ENST00000394768.6	18.588	21.878	18.447	0.765(7325)	0.925(649)	0.955(16593)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RHEBP1_UP_LS0007	chr10:46651974|46669633:-	RHEBP1	RHEB pseudogene 1	pseudogene	no	.	1.891	0.112	0.000	0.002(15)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TTYH3_LS0088	chr7:2662696|2662736:-	TTYH3	tweety family member 3	protein coding gene	no	.	9.274	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BAZ2A_LS0084	chr12:56614920|56615014:-	BAZ2A	bromodomain adjacent to zinc finger domain 2A	protein coding gene	no	.	4.699	0.500	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
DYRK4_LS012	chr12:4580977|4588937:+	DYRK4	dual specificity tyrosine phosphorylation regulated kinase 4	protein coding gene	no	ENST00000539701.5;ENST00000537719.5	1.468	0.610	0.855	0.042(401)	0.057(40)	0.233(4055)	non tumor-specific	alt_5prime;exon_skip	yes
FRY_LS011	chr13:32102016|32117334:+	FRY	FRY microtubule binding protein	protein coding gene	no	ENST00000645780.1;ENST00000647500.1;ENST00000642040.1;ENST00000380250.7;ENST00000542859.5;ENST00000436046.1	4.882	2.974	2.738	0.365(3495)	0.623(437)	0.834(14505)	non tumor-specific	nAS	yes
UN_AL390957.1_LS0015	chr1:192380969|192387632:-	AL390957.1	-	lncRNA gene	no	.	2.491	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HSP90AA1_LS0050	chr14:102081386|102081455:+	HSP90AA1	heat shock protein 90 alpha family class A member 1	protein coding gene	no	.	4.090	0.302	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TIMM44_LS0010	chr19:7932071|7932627:-	TIMM44	translocase of inner mitochondrial membrane 44	protein coding gene	no	.	3.786	0.071	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_TNRC18_LS0014	chr7:5307572|5307900:+	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	.	2.893	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
OPRL1_LS007	chr20:64080352|64097802:+	OPRL1	opioid related nociceptin receptor 1	protein coding gene	no	.;.	1.539	0.442	0.000	0.046(440)	0.027(19)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MACF1_LS123	chr1:39463686|39468615:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000372915.7;ENST00000361689.6;ENST00000372925.6;ENST00000442046.5;ENST00000422234.2;ENST00000462496.5	22.652	16.479	39.863	0.99(9489)	0.987(693)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_AC013436.1_UP_LS0003	chr7:44795968|44796068:-	AC013436.1	-	lncRNA gene	no	.	2.428	0.185	0.000	0.023(218)	0.006(4)	0(0)	non tumor-specific	nAS	no
GSTM1_LS009	chr1:109689325|109690271:+	GSTM1	glutathione S-transferase mu 1	protein coding gene	no	ENST00000309851.9;ENST00000369823.6;ENST00000349334.7;ENST00000476065.6	88.060	130.564	80.425	0.569(5451)	0.577(405)	0.68(11826)	non tumor-specific	nAS	yes
UN_ZNF341-AS1_LS0001	chr20:33794251|33795514:-	ZNF341-AS1	ZNF341 antisense RNA 1	lncRNA gene	no	.	2.429	0.776	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
AARS2_LS012	chr6:44304817|44305054:-	AARS2	alanyl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000244571.4	21.125	9.705	11.656	0.972(9311)	0.986(692)	0.975(16939)	non tumor-specific	intron_retention	yes
UN_ARMC5_LS0010	chr16:31465982|31466083:+	ARMC5	armadillo repeat containing 5	protein coding gene	yes	.	5.129	0.704	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_CYB5R3_LS0175	chr22:42619799|42627322:+	CYB5R3	cytochrome b5 reductase 3	protein coding gene	no	.	0.692	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
SLC35B3_LS015	chr6:8430157|8435077:-	SLC35B3	solute carrier family 35 member B3	protein coding gene	no	.;.	1.914	0.052	0.000	0.005(50)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
COPG1_LS027	chr3:129274136|129274838:+	COPG1	COPI coat complex subunit gamma 1	protein coding gene	no	ENST00000514478.1	0.100	0.185	0.818	0.128(1224)	0.088(62)	0.394(6856)	non tumor-specific	exon_skip	yes
UN_SERPINA12_UP_LS0003	chr14:94556757|94557070:-	SERPINA12	serpin family A member 12	protein coding gene	no	.	1.250	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPIA_LS0023	chr7:44801413|44801450:-	PPIA	peptidylprolyl isomerase A	protein coding gene	no	.	65.239	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
AF117829.1_LS005	chr8:89615305|89628155:-	AF117829.1	-	lncRNA gene	no	ENST00000519655.6	0.194	0.005	0.685	0.009(87)	0.004(3)	0.074(1278)	non tumor-specific	nAS	yes
NDRG3_LS006	chr20:36656411|36656497:-	NDRG3	NDRG family member 3	protein coding gene	no	ENST00000373803.6;ENST00000359675.6;ENST00000349004.5;ENST00000373773.7	48.669	30.630	32.346	0.994(9528)	0.997(700)	0.979(17018)	non tumor-specific	exon_skip	yes
GLRX5_LS002	chr14:95535384|95542973:+	GLRX5	glutaredoxin 5	protein coding gene	no	ENST00000557731.1	2.952	4.376	0.650	0.048(462)	0.034(24)	0.036(633)	non tumor-specific	alt_3prime;exon_skip	yes
LINC02129_LS003	chr16:27171979|27176563:-	LINC02129	long intergenic non-protein coding RNA 2129	lncRNA gene	no	ENST00000564381.2	1.440	0.000	0.689	0.005(46)	0(0)	0.034(593)	non tumor-specific	nAS	yes
SLC34A1_LS010	chr5:177388189|177388277:+	SLC34A1	solute carrier family 34 member 1	protein coding gene	no	ENST00000512593.5;ENST00000324417.5	3.008	263.625	0.958	0.027(256)	0.148(104)	0.031(532)	non tumor-specific	exon_skip;intron_retention	yes
PI4KAP1_LS003	chr22:18535948|18536650:-	PI4KAP1	phosphatidylinositol 4-kinase alpha pseudogene 1	pseudogene	no	ENST00000619742.4;ENST00000617243.4;ENST00000618794.4;ENST00000612579.4	18.574	7.534	11.497	0.973(9325)	0.964(677)	0.972(16892)	non tumor-specific	nAS	yes
IPO5_LS034	chr13:98008142|98009881:+	IPO5	importin 5	protein coding gene	no	ENST00000261574.9;ENST00000357602.7;ENST00000490680.5;ENST00000469360.5;ENST00000491555.5	134.535	86.167	84.168	0.984(9424)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
UN_RPSAP68_UP_LS0470	chr21:8400865|8443904:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	313.742	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	nAS	no
LSP1_LS008	chr11:1868986|1880087:+	LSP1	lymphocyte specific protein 1	protein coding gene	no	ENST00000405957.6	4.781	12.641	12.347	0.644(6174)	0.829(582)	0.742(12894)	non tumor-specific	exon_skip	yes
UN_PRKAB2_LS0008	chr1:147162573|147171989:-	PRKAB2	protein kinase AMP-activated non-catalytic subunit beta 2	protein coding gene	no	.	0.860	0.160	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ZMYM3_LS009	chrX:71244470|71244790:-	ZMYM3	zinc finger MYM-type containing 3	protein coding gene	no	ENST00000314425.9;ENST00000373998.5;ENST00000489332.1;ENST00000373984.7;ENST00000373988.5	33.689	18.071	16.818	0.977(9357)	0.983(690)	0.974(16927)	non tumor-specific	intron_retention	yes
UN_HLA-DPA1_LS0069	chr6:33069067|33069090:+	HLA-DPA1	major histocompatibility complex, class II, DP alpha 1	protein coding gene	no	.	12.800	2.969	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CLOCK_LS0003	chr4:55434781|55435430:-	CLOCK	clock circadian regulator	protein coding gene	no	.	0.895	0.075	0.000	0.006(61)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_KHSRP_LS0103	chr19:6415140|6415213:-	KHSRP	KH-type splicing regulatory protein	protein coding gene	no	.	4.107	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	intron_retention	no
UN_PLSCR5_UP_LS0001	chr3:146683448|146684522:-	PLSCR5	phospholipid scramblase family member 5	protein coding gene	no	.	3.749	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC087203.3_UP_LS0011	chr8:12388334|12410965:+	AC087203.3	-	lncRNA gene	no	.	2.499	0.803	0.000	0.053(509)	0.083(58)	0(0)	non tumor-specific	nAS	no
UN_PLK5_LS0001	chr19:1529872|1531738:+	PLK5	polo like kinase 5 (inactive)	protein coding gene	yes	.	3.007	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_IPP_LS0059	chr1:45746461|45748827:-	IPP	intracisternal A particle-promoted polypeptide	protein coding gene	no	.	0.439	0.157	0.000	0.006(58)	0.007(5)	0(0)	non tumor-specific	nAS	no
AC009950.1_LS012	chr2:230172515|230173688:+	AC009950.1	-	lncRNA gene	no	ENST00000630748.2;ENST00000595586.2;ENST00000594622.1	0.184	0.039	0.722	0.048(460)	0.037(26)	0.022(382)	non tumor-specific	nAS	yes
UN_AHNAK_LS0549	chr11:62521462|62529881:-	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	4.530	1.524	0.000	0.004(41)	0.006(4)	0(0)	non tumor-specific	nAS	no
BMP15_LS001	chrX:50911111|50915757:+	BMP15	bone morphogenetic protein 15	protein coding gene	no	ENST00000252677.3	0.022	0.004	0.673	0.005(46)	0.006(4)	0.001(14)	non tumor-specific	nAS	yes
WDR43_LS007	chr2:28912710|28914069:+	WDR43	WD repeat domain 43	protein coding gene	no	ENST00000407426.7;ENST00000440983.1;ENST00000296126.6	37.855	16.402	16.491	0.974(9331)	0.99(695)	0.975(16943)	non tumor-specific	alt_3prime;exon_skip	yes
GLRB_LS003	chr4:157078146|157084664:+	GLRB	glycine receptor beta	protein coding gene	no	ENST00000515642.5;ENST00000506411.5	0.737	0.258	0.889	0.104(993)	0.114(80)	0.248(4315)	non tumor-specific	exon_skip	yes
UN_OLA1_LS0007	chr2:174082001|174123180:-	OLA1	Obg like ATPase 1	protein coding gene	no	.	4.089	0.182	0.000	0.007(67)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MYCBP2_LS021	chr13:77081993|77083032:-	MYCBP2	MYC binding protein 2	protein coding gene	no	ENST00000544440.6;ENST00000357337.10;ENST00000429715.1	25.750	23.485	31.123	0.919(8807)	0.981(689)	0.975(16954)	non tumor-specific	nAS	yes
NSD1_LS014	chr5:177229886|177235821:+	NSD1	nuclear receptor binding SET domain protein 1	protein coding gene	yes	ENST00000375350.3	0.079	0.099	0.680	0.09(867)	0.127(89)	0.171(2969)	non tumor-specific	exon_skip	yes
MIS18BP1_LS018	chr14:45235944|45237648:-	MIS18BP1	MIS18 binding protein 1	protein coding gene	no	ENST00000310806.8;ENST00000454990.5;ENST00000627697.1	19.309	6.350	5.034	0.874(8376)	0.915(642)	0.903(15699)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF180_LS018	chr19:44497377|44500275:-	ZNF180	zinc finger protein 180	protein coding gene	no	ENST00000592095.5;ENST00000592529.5;ENST00000586637.5	1.545	1.269	1.600	0.717(6871)	0.842(591)	0.718(12488)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
ABCB1_LS028	chr7:87570223|87585512:-	ABCB1	ATP binding cassette subfamily B member 1	protein coding gene	no	ENST00000622132.4;ENST00000265724.7;ENST00000543898.5	7.767	17.934	2.612	0.477(4568)	0.832(584)	0.742(12900)	non tumor-specific	nAS	yes
OIP5-AS1_LS005	chr15:41286100|41287983:+	OIP5-AS1	OIP5 antisense RNA 1	lncRNA gene	no	ENST00000557993.5	0.098	0.101	0.939	0.771(7388)	0.833(585)	0.446(7748)	non tumor-specific	nAS	yes
UN_OPRL1_LS0007	chr20:64080382|64092688:+	OPRL1	opioid related nociceptin receptor 1	protein coding gene	no	.	1.545	0.102	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_DLGAP5_LS0004	chr14:55162615|55162971:-	DLGAP5	DLG associated protein 5	protein coding gene	no	.	3.642	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
PCBP1-AS1_LS056	chr2:70018131|70055714:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000627181.2	0.003	0.000	0.659	0.007(69)	0.011(8)	0.02(340)	non tumor-specific	nAS	yes
UN_MTCO3P12_LS0037	chr1:634690|634721:-	MTCO3P12	MT-CO3 pseudogene 12	pseudogene	no	.	23.950	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP2CB_LS0012	chr8:30794281|30799546:-	PPP2CB	protein phosphatase 2 catalytic subunit beta	protein coding gene	yes	.	24.778	4.262	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_LINC02109_LS0019	chr5:29205492|29208860:+	LINC02109	long intergenic non-protein coding RNA 2109	lncRNA gene	no	.	2.811	0.230	0.000	0.022(209)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TTC28_LS0014	chr22:27990151|27993124:+	TTC28	tetratricopeptide repeat domain 28	protein coding gene	no	.	2.606	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC093001.1_UP_LS0006	chr3:149224316|149224997:+	AC093001.1	-	lncRNA gene	no	.	3.950	2.224	0.000	0.047(454)	0.081(57)	0(0)	non tumor-specific	nAS	no
LINC01515_LS008	chr10:65579948|65585485:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000620859.4	0.392	0.028	0.600	0.005(52)	0.004(3)	0.007(116)	non tumor-specific	nAS	yes
UN_AL691432.2_UP_LS0060	chr1:1640306|1707409:-	AL691432.2	-	lncRNA gene	no	.	8.381	2.090	0.000	0.003(25)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL592429.2_LS002	chr6:139271858|139283104:+	AL592429.2	-	lncRNA gene	no	ENST00000441249.1;ENST00000650173.1	2.240	0.696	0.866	0.037(354)	0.05(35)	0.221(3847)	non tumor-specific	nAS	yes
UN_GOSR1_LS0009	chr17:30480947|30481143:+	GOSR1	golgi SNAP receptor complex member 1	protein coding gene	no	.	1.171	0.044	0.000	0.02(187)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_ZNF581_LS0066	chr19:55644026|55644553:+	ZNF581	zinc finger protein 581	protein coding gene	no	.	3.897	0.132	0.000	0.03(288)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_TOMM34_LS0037	chr20:44955620|44958337:+	TOMM34	translocase of outer mitochondrial membrane 34	protein coding gene	no	.	3.223	0.382	0.000	0.006(61)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_PHKG1_LS0003	chr7:56080377|56080513:-	PHKG1	phosphorylase kinase catalytic subunit gamma 1	protein coding gene	no	.	22.859	1.682	0.000	0.016(149)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MYO18A_LS0054	chr17:29092517|29092855:-	MYO18A	myosin XVIIIA	protein coding gene	no	.	12.122	0.372	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
PRAC1_LS001	chr17:48721899|48722318:-	PRAC1	PRAC1 small nuclear protein	protein coding gene	no	ENST00000290294.4	36.486	25.255	2.042	0.163(1557)	0.177(124)	0.087(1512)	non tumor-specific	nAS	yes
UN_AC007383.3_UP_LS0011	chr2:206100666|206102209:+	AC007383.3	-	lncRNA gene	no	.	1.832	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
FAM197Y3_LS003	chrY:9503109|9504608:-	FAM197Y3	family with sequence similarity 197 Y-linked member 3	pseudogene	no	ENST00000414596.5	0.788	0.082	0.000	0.004(41)	0.009(6)	0(0)	non tumor-specific	nAS	yes
FOS_LS002	chr14:75279123|75279906:+	FOS	Fos proto-oncogene, AP-1 transcription factor subunit	protein coding gene	yes	ENST00000554212.5	9.805	14.098	5.815	0.853(8176)	0.922(647)	0.877(15246)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RFC5_LS0013	chr12:118027018|118027962:+	RFC5	replication factor C subunit 5	protein coding gene	no	.	3.807	0.203	0.000	0.012(111)	0.007(5)	0(0)	non tumor-specific	alt_3prime;mutex_exons	no
POGLUT1_LS018	chr3:119486932|119488929:+	POGLUT1	protein O-glucosyltransferase 1	protein coding gene	no	ENST00000295588.8;ENST00000486607.5;ENST00000647766.1;ENST00000295588.8;ENST00000486607.5;ENST00000647766.1;ENST00000295588.8;ENST00000486607.5;ENST00000647766.1	19.699	11.657	9.358	0.977(9362)	0.983(690)	0.97(16854)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AL161421.1_LS001	chr13:48975980|48976781:-	AL161421.1	-	lncRNA gene	no	ENST00000619666.1	0.107	0.087	0.626	0.069(662)	0.111(78)	0.013(223)	non tumor-specific	nAS	yes
HUWE1_LS062	chrX:53594621|53595187:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000612484.4;ENST00000342160.7;ENST00000262854.10;ENST00000218328.12	32.191	22.366	15.999	0.828(7932)	0.936(657)	0.965(16782)	non tumor-specific	exon_skip	yes
UN_PPP2R2C_LS0007	chr4:6329353|6333607:-	PPP2R2C	protein phosphatase 2 regulatory subunit Bgamma	protein coding gene	yes	.	0.889	0.138	0.000	0.007(71)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
COL28A1_LS009	chr7:7380862|7381544:-	COL28A1	collagen type XXVIII alpha 1 chain	protein coding gene	no	ENST00000399429.7	3.440	1.923	3.921	0.193(1853)	0.349(245)	0.815(14162)	non tumor-specific	alt_3prime	yes
AC006305.1_LS001	chr18:56003904|56025341:-	AC006305.1	-	lncRNA gene	no	ENST00000382897.2;ENST00000650203.1	2.769	0.486	2.254	0.003(33)	0.019(13)	0.074(1285)	non tumor-specific	nAS	yes
WISP3_LS007	chr6:112064786|112068205:+	WISP3	cellular communication network factor 6	protein coding gene	yes	.;.	4.106	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_UCP2_LS0085	chr11:73978477|73980015:-	UCP2	uncoupling protein 2	protein coding gene	no	.	1.875	0.129	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
AL138686.1_LS001	chr13:46474334|46492883:+	AL138686.1	-	lncRNA gene	no	ENST00000612699.1	0.719	0.000	0.677	0.001(9)	0(0)	0.001(13)	non tumor-specific	nAS	yes
GALNT14_LS026	chr2:30993007|31129277:-	GALNT14	polypeptide N-acetylgalactosaminyltransferase 14	protein coding gene	no	ENST00000490212.5	0.017	0.002	0.717	0.394(3775)	0.368(258)	0.007(121)	non tumor-specific	exon_skip	yes
EIPR1_LS019	chr2:3262137|3318857:-	EIPR1	EARP complex and GARP complex interacting protein 1	protein coding gene	no	ENST00000478754.5	17.303	0.000	0.574	0(3)	0(0)	0.001(20)	non tumor-specific	nAS	yes
UN_ZNF761_LS0024	chr19:53433750|53446227:+	ZNF761	zinc finger protein 761	protein coding gene	no	.	1.897	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
LRIG1_LS004	chr3:66382398|66382982:-	LRIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	yes	ENST00000273261.7;ENST00000383703.3;ENST00000496559.6;ENST00000495037.1	89.224	64.189	60.624	0.95(9100)	0.994(698)	0.975(16951)	non tumor-specific	alt_5prime;exon_skip	yes
UN_IFT46_LS0037	chr11:118565705|118566202:+	IFT46	intraflagellar transport 46	protein coding gene	no	.	0.991	0.168	0.000	0.004(35)	0.004(3)	0(0)	non tumor-specific	nAS	no
NXNL2_LS011	chr9:88538392|88539714:+	NXNL2	nucleoredoxin like 2	protein coding gene	no	ENST00000618633.1	1.469	0.000	0.607	0.003(25)	0(0)	0(3)	non tumor-specific	nAS	yes
CHEK1_LS020	chr11:125635533|125637449:+	CHEK1	checkpoint kinase 1	protein coding gene	yes	ENST00000532449.5;ENST00000438015.5;ENST00000427383.6;ENST00000428830.6;ENST00000544373.5;ENST00000532669.5;ENST00000534070.5;ENST00000524737.5;ENST00000278916.7	18.513	2.690	2.061	0.899(8616)	0.728(511)	0.76(13208)	non tumor-specific	exon_skip	yes
UN_PTMA_LS0059	chr2:231711987|231712448:+	PTMA	prothymosin alpha	protein coding gene	yes	.	886.157	136.614	0.000	0.007(71)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
DNAH11_LS043	chr7:21702802|21704434:+	DNAH11	dynein axonemal heavy chain 11	protein coding gene	no	ENST00000620169.4;ENST00000328843.10;ENST00000409508.7	3.816	0.898	1.109	0.071(683)	0.066(46)	0.266(4631)	non tumor-specific	nAS	yes
AGT_LS007	chr1:230706200|230709995:-	AGT	alanine--glyoxylate and serine--pyruvate aminotransferase	protein coding gene	no	ENST00000366667.4;ENST00000366667.4;ENST00000366667.4	233.982	219.395	24.617	0.821(7864)	0.949(666)	0.918(15948)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_AC008429.2_UP_LS0003	chr5:172969590|172973856:+	AC008429.2	-	pseudogene	no	.	1.182	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
METTL23_LS007	chr17:76726879|76732978:+	METTL23	methyltransferase like 23	protein coding gene	no	ENST00000591571.5;ENST00000591571.5	0.140	0.061	1.752	0.861(8250)	0.902(633)	0.806(14015)	non tumor-specific	alt_5prime;exon_skip	yes
PDCD11_LS005	chr10:103398528|103400397:+	PDCD11	programmed cell death 11	protein coding gene	no	ENST00000649849.1;ENST00000369797.7	14.911	6.786	5.679	0.892(8544)	0.946(664)	0.933(16216)	non tumor-specific	exon_skip	yes
IDH3G_LS001	chrX:153785973|153786212:-	IDH3G	isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma	protein coding gene	no	ENST00000217901.9	121.914	58.202	135.607	0.99(9489)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_IDH1_LS0026	chr2:208253959|208254787:-	IDH1	isocitrate dehydrogenase (NADP(+)) 1	protein coding gene	yes	.	11.249	1.565	0.000	0.002(18)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
HEATR1_LS017	chr1:236569124|236571351:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	ENST00000366582.7;ENST00000366581.6	19.787	7.053	9.761	0.949(9093)	0.959(673)	0.962(16713)	non tumor-specific	alt_3prime;exon_skip	yes
CAMK4_LS001	chr5:111223706|111224407:+	CAMK4	calcium/calmodulin dependent protein kinase IV	protein coding gene	no	ENST00000508074.5	0.122	0.101	1.016	0.015(144)	0.009(6)	0.046(803)	non tumor-specific	nAS	yes
UN_C6orf223_LS0008	chr6:44001116|44001637:-	C6orf223	chromosome 6 open reading frame 223	protein coding gene	no	.	1.054	0.066	0.000	0.02(196)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC026464.1_LS0010	chr16:69340087|69340194:+	AC026464.1	-	protein coding gene	no	.	7.892	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
UN_ATP8B3_LS0003	chr19:1789700|1789890:-	ATP8B3	ATPase phospholipid transporting 8B3	protein coding gene	no	.	1.114	0.000	0.000	0.006(59)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PRR5L_LS0028	chr11:36394368|36396114:+	PRR5L	proline rich 5 like	protein coding gene	no	.	1.424	0.782	0.000	0.01(100)	0.058(41)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
CHMP7_LS008	chr8:23248197|23255247:+	CHMP7	charged multivesicular body protein 7	protein coding gene	no	ENST00000519984.1	0.029	0.000	0.630	0.017(165)	0.009(6)	0.014(250)	non tumor-specific	exon_skip	yes
UN_FAM219B_UP_LS0003	chr15:74918943|74920271:-	FAM219B	family with sequence similarity 219 member B	protein coding gene	no	.	0.908	0.452	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
EYA1_LS024	chr8:71356511|71361647:-	EYA1	EYA transcriptional coactivator and phosphatase 1	protein coding gene	no	ENST00000644427.1;ENST00000340726.7;ENST00000465115.6;ENST00000303824.11;ENST00000388741.7;ENST00000645451.1	2.097	0.264	1.205	0.201(1928)	0.148(104)	0.234(4067)	non tumor-specific	nAS	yes
UN_AL133477.1_UP_LS0001	chr9:96383914|96398763:+	AL133477.1	-	pseudogene	no	.	1.499	0.162	0.000	0.03(286)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_TP73-AS1_LS0114	chr1:3739871|3739908:-	TP73-AS1	TP73 antisense RNA 1	pseudogene	no	.	3.971	1.677	0.000	0.03(289)	0.033(23)	0(0)	non tumor-specific	nAS	no
DHX30_LS034	chr3:47849554|47849630:+	DHX30	DExH-box helicase 30	protein coding gene	no	ENST00000445061.5;ENST00000395745.6;ENST00000348968.8;ENST00000446256.6;ENST00000619982.4;ENST00000457607.1	164.433	78.138	100.583	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
FAM205C_LS006	chr9:34895084|34895579:-	FAM205C	family with sequence similarity 205 member C	protein coding gene	no	ENST00000340783.10;ENST00000603640.6;ENST00000603592.1	0.154	0.000	0.730	0.001(10)	0.003(2)	0.012(213)	non tumor-specific	nAS	yes
UN_PBX1_LS0011	chr1:164563311|164625929:+	PBX1	PBX homeobox 1	protein coding gene	yes	.	1.552	0.497	0.000	0.05(480)	0.063(44)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
EVPL_LS024	chr17:76022227|76022413:-	EVPL	envoplakin	protein coding gene	no	ENST00000301607.7;ENST00000586740.1;ENST00000587569.5	18.021	11.704	4.207	0.7(6705)	0.816(573)	0.497(8639)	non tumor-specific	alt_5prime	yes
UN_HOXC4_LS0026	chr12:54053276|54053423:+	HOXC4	homeobox C4	protein coding gene	no	.	1.686	0.240	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SMARCAD1_LS0001	chr4:94207735|94207841:+	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein coding gene	no	.	0.293	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL450345.1_UP_LS0030	chr6:164237857|164336968:+	AL450345.1	-	lncRNA gene	no	.	2.424	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HOXB3_LS0138	chr17:48603968|48604480:-	HOXB3	homeobox B3	protein coding gene	no	.	3.584	1.680	0.000	0.071(683)	0.051(36)	0(0)	non tumor-specific	nAS	no
UN_ASXL2_LS0013	chr2:25771540|25786895:-	ASXL2	ASXL transcriptional regulator 2	protein coding gene	no	.	4.080	0.193	0.000	0.007(69)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
SPIN1_LS025	chr9:88416766|88418850:+	SPIN1	sphingolipid transporter 1 (putative)	protein coding gene	no	.;.	1.527	0.773	0.000	0.037(353)	0.084(59)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_COX5B_LS0010	chr2:97646406|97646517:+	COX5B	cytochrome c oxidase subunit 5B	protein coding gene	no	.	4.843	0.230	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
TEP1_LS024	chr14:20377358|20377425:-	TEP1	telomerase associated protein 1	protein coding gene	no	ENST00000471684.2	0.356	0.524	0.808	0.533(5111)	0.519(364)	0.42(7293)	non tumor-specific	exon_skip;intron_retention	yes
MIDN_LS004	chr19:1251901|1253954:+	MIDN	midnolin	protein coding gene	no	ENST00000586843.2	5.673	4.731	14.771	0.963(9230)	0.969(680)	0.974(16937)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SPOCK2_LS0114	chr10:72062791|72062825:-	SPOCK2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2	protein coding gene	no	.	71.686	5.895	0.000	0.005(44)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AL807752.6_LS0013	chr9:137039645|137039731:-	AL807752.6	-	protein coding gene	no	.	18.867	4.234	0.000	0.016(157)	0.019(13)	0(0)	non tumor-specific	intron_retention	no
CCDC114_LS018	chr19:48318576|48318713:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	ENST00000315396.7;ENST00000474199.5;ENST00000497803.1	2.064	0.976	1.199	0.204(1956)	0.208(146)	0.482(8378)	non tumor-specific	exon_skip	yes
CFLAR_LS025	chr2:201142762|201145378:+	CFLAR	CASP8 and FADD like apoptosis regulator	protein coding gene	yes	ENST00000439154.6	0.047	0.052	1.702	0.192(1842)	0.285(200)	0.728(12649)	non tumor-specific	exon_skip	yes
UN_LINC01541_LS0016	chr18:71548696|71578826:-	LINC01541	long intergenic non-protein coding RNA 1541	lncRNA gene	no	.	3.182	0.620	0.000	0.004(36)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS1121	chr11:62527603|62529803:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.446	0.839	0.000	0.003(24)	0.006(4)	0(0)	non tumor-specific	nAS	no
THBS3_LS030	chr1:155202401|155202812:-	THBS3	thrombospondin 3	protein coding gene	no	ENST00000368378.7;ENST00000541576.5;ENST00000457183.6;ENST00000541990.5;ENST00000428962.2;ENST00000486260.5;ENST00000460050.1	19.139	9.280	22.569	0.951(9114)	0.98(688)	0.975(16955)	non tumor-specific	alt_3prime;intron_retention	yes
POLG_LS057	chr15:89332374|89333096:-	POLG	DNA polymerase gamma, catalytic subunit	protein coding gene	no	ENST00000631044.2	1.465	0.823	2.349	0.416(3982)	0.442(310)	0.846(14697)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
GS1-279B7.1_LS006	chr1:185334387|185334961:-	GS1-279B7.1	-	pseudogene	no	ENST00000563533.5;ENST00000565520.1	0.309	0.000	0.690	0(2)	0(0)	0.001(18)	non tumor-specific	nAS	yes
UN_CROCC_LS0156	chr1:16969340|16969809:+	CROCC	ciliary rootlet coiled-coil, rootletin	protein coding gene	no	.	5.173	1.380	0.000	0.004(43)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ZNF24_LS007	chr18:35340733|35344360:-	ZNF24	zinc finger protein 24	protein coding gene	no	ENST00000261332.10	2.338	2.814	2.661	0.885(8478)	0.969(680)	0.888(15442)	non tumor-specific	alt_5prime	yes
FAM210A_LS005	chr18:13670968|13671862:-	FAM210A	family with sequence similarity 210 member A	protein coding gene	no	ENST00000589346.1	0.313	0.153	1.247	0.581(5563)	0.566(397)	0.613(10649)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MMP14_LS0207	chr14:22846802|22846900:-	MMP14	matrix metallopeptidase 14	protein coding gene	no	.	2.613	0.121	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF451_LS017	chr6:57133192|57134744:+	ZNF451	zinc finger protein 451	protein coding gene	no	ENST00000370706.8;ENST00000357489.7;ENST00000444273.6;ENST00000491832.6;ENST00000502749.1	7.527	6.102	7.960	0.875(8388)	0.959(673)	0.954(16590)	non tumor-specific	exon_skip	yes
TBC1D7_LS009	chr6:13306527|13307600:-	TBC1D7	TBC1 domain family member 7	protein coding gene	yes	ENST00000606214.5;ENST00000356436.8;ENST00000379300.7;ENST00000343141.8;ENST00000379307.6;ENST00000452989.5;ENST00000450347.5;ENST00000422136.5;ENST00000446018.5	65.318	20.659	22.576	0.996(9545)	0.996(699)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC024255.1_UP_LS0017	chr12:28810684|28813655:+	AC024255.1	-	pseudogene	no	.	2.978	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS090	chr4:122339408|122343410:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000438707.5;ENST00000306802.8;ENST00000442707.1	21.195	20.978	39.763	0.965(9241)	0.989(694)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_TMC6_LS0104	chr17:78131129|78131575:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	.	1.643	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_PLVAP_LS0057	chr19:17365433|17365556:+	PLVAP	plasmalemma vesicle associated protein	protein coding gene	no	.	10.408	0.560	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
TDRD12_LS035	chr19:32826598|32827164:+	TDRD12	tudor domain containing 12	protein coding gene	no	ENST00000637289.1	3.990	0.000	0.807	0.001(6)	0(0)	0.015(257)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NDST3_LS0003	chr4:118133609|118204160:-	NDST3	N-deacetylase and N-sulfotransferase 3	protein coding gene	no	.	2.030	0.126	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CACNA1G_LS004	chr17:50569803|50571878:+	CACNA1G	calcium voltage-gated channel subunit alpha1 G	protein coding gene	no	ENST00000360761.8;ENST00000354983.8;ENST00000352832.9;ENST00000442258.6;ENST00000416767.8;ENST00000502264.5;ENST00000512389.5;ENST00000513964.5;ENST00000514717.5;ENST00000510366.5;ENST00000503485.5;ENST00000507510.6;ENST00000511765.5;ENST00000507336.5;ENST00000506406.5;ENST00000504076.5;ENST00000513689.6;ENST00000507609.5;ENST00000503436.5;ENST00000510115.5;ENST00000515165.5;ENST00000514181.5;ENST00000515765.5;ENST00000514079.5;ENST00000507896.5;ENST00000511768.5;ENST00000505165.5;ENST00000503607.5;ENST00000515411.5;ENST00000429973.6;ENST00000359106.9;ENST00000358244.9;ENST00000570567.1	3.381	1.043	1.471	0.078(752)	0.043(30)	0.412(7167)	non tumor-specific	alt_3prime;exon_skip	yes
UN_BMI1_LS0017	chr10:22329351|22329434:+	BMI1	BMI1 proto-oncogene, polycomb ring finger	protein coding gene	yes	.	2.791	0.570	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
TBC1D9B_LS029	chr5:179879789|179888103:-	TBC1D9B	TBC1 domain family member 9B	protein coding gene	no	ENST00000355235.7;ENST00000356834.7	86.068	64.799	59.764	0.982(9412)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
BTBD7_LS001	chr14:93243088|93245825:-	BTBD7	BTB domain containing 7	protein coding gene	no	ENST00000355125.3;ENST00000334746.9;ENST00000554565.5;ENST00000553975.1	12.561	10.359	8.432	0.946(9064)	0.957(672)	0.965(16774)	non tumor-specific	alt_3prime	yes
CNBP_LS013	chr3:129171538|129171655:-	CNBP	CCHC-type zinc finger nucleic acid binding protein	protein coding gene	no	ENST00000502976.5;ENST00000446936.6	202.913	141.873	223.131	0.998(9558)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
MYO9A_LS053	chr15:72010447|72019039:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000356056.9;ENST00000564571.5;ENST00000444904.5;ENST00000567560.5;ENST00000424560.2;ENST00000568438.1	4.157	3.270	2.425	0.577(5532)	0.786(552)	0.83(14431)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZC3H3_UP_LS0008	chr8:143541970|143542267:-	ZC3H3	zinc finger CCCH-type containing 3	protein coding gene	no	.	1.527	0.387	0.000	0.029(277)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_RASSF1_LS0024	chr3:50337448|50337905:-	RASSF1	Ras association domain family member 1	protein coding gene	yes	.	3.413	1.375	0.000	0.053(508)	0.043(30)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
EFR3B_LS008	chr2:25128332|25129975:+	EFR3B	EFR3 homolog B	protein coding gene	no	ENST00000401432.7;ENST00000403714.7;ENST00000402191.5;ENST00000405108.5;ENST00000264719.5	5.569	4.858	1.912	0.307(2941)	0.332(233)	0.592(10286)	non tumor-specific	nAS	yes
SINHCAF_LS011	chr12:31298224|31323944:-	SINHCAF	SIN3-HDAC complex associated factor	protein coding gene	no	ENST00000454658.6	5.935	7.520	3.263	0.875(8382)	0.915(642)	0.78(13558)	non tumor-specific	alt_5prime;exon_skip	yes
BANP_LS011	chr16:87970170|87975048:+	BANP	BTG3 associated nuclear protein	protein coding gene	yes	ENST00000393207.5	0.022	0.013	0.616	0.004(36)	0.006(4)	0.007(130)	non tumor-specific	nAS	yes
UN_DOCK1_LS0002	chr10:126905552|126970702:+	DOCK1	dedicator of cytokinesis 1	protein coding gene	no	.	1.602	0.771	0.000	0.012(117)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_KIF7_LS0052	chr15:89652954|89654910:-	KIF7	kinesin family member 7	protein coding gene	yes	.	1.005	0.155	0.000	0.013(125)	0.009(6)	0(0)	non tumor-specific	nAS	no
TCL6_LS007	chr14:95662664|95663256:+	TCL6	T cell leukemia/lymphoma 6	lncRNA gene	yes	ENST00000357168.6	1.276	0.295	0.677	0.012(119)	0.063(44)	0.022(389)	non tumor-specific	nAS	yes
UN_TUT7_LS0009	chr9:86299257|86301276:-	TUT7	terminal uridylyl transferase 7	protein coding gene	no	.	2.383	0.286	0.000	0.006(56)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_AC091885.2_UP_LS0007	chr5:23977922|24320619:+	AC091885.2	-	lncRNA gene	no	.	2.483	0.000	0.000	0.007(70)	0(0)	0(0)	non tumor-specific	nAS	no
HSPD1_LS011	chr2:197490296|197493324:-	HSPD1	heat shock protein family D (Hsp60) member 1	protein coding gene	yes	ENST00000388968.7;ENST00000345042.6;ENST00000388968.7;ENST00000345042.6	817.529	466.942	228.228	0.998(9566)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SERPINH1_LS001	chr11:75562319|75563727:+	SERPINH1	serpin family H member 1	protein coding gene	no	ENST00000533603.5;ENST00000649490.1;ENST00000530284.5	0.242	0.355	5.487	0.399(3825)	0.671(471)	0.855(14867)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AGK_UP_LS0008	chr7:141522033|141551152:+	AGK	acylglycerol kinase	protein coding gene	no	.	0.727	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC01362_LS0024	chr1:83080706|83102902:-	LINC01362	long intergenic non-protein coding RNA 1362	lncRNA gene	no	.	0.967	0.356	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PROZ_LS0031	chr13:113166426|113167165:+	PROZ	protein Z, vitamin K dependent plasma glycoprotein	protein coding gene	no	.	0.612	0.979	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ZNF100_LS004	chr19:21744115|21744941:-	ZNF100	zinc finger protein 100	protein coding gene	no	ENST00000358296.10;ENST00000598026.1	3.357	1.694	1.294	0.741(7099)	0.815(572)	0.672(11675)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
XAGE2_LS001	chrX:52369214|52370007:+	XAGE2	X antigen family member 2	protein coding gene	no	ENST00000286049.2	6.018	1.154	1.239	0.119(1139)	0.226(159)	0.11(1920)	non tumor-specific	nAS	yes
MIR9-3HG_LS010	chr15:89382597|89386789:+	MIR9-3HG	MIR9-3 host gene	lncRNA gene	no	ENST00000561037.5	0.288	0.028	0.674	0.027(257)	0.004(3)	0.001(10)	non tumor-specific	nAS	yes
MRPL34_LS006	chr19:17305933|17306242:+	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	ENST00000602206.1	8.208	5.551	0.960	0.804(7700)	0.783(550)	0.553(9613)	non tumor-specific	alt_3prime	yes
CTBP2_LS002	chr10:124992812|124993202:-	CTBP2	C-terminal binding protein 2	protein coding gene	yes	ENST00000337195.9;ENST00000309035.10;ENST00000334808.10;ENST00000531469.5;ENST00000494626.6;ENST00000411419.6	125.112	75.555	71.244	0.992(9504)	0.996(699)	0.976(16963)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF567_LS0009	chr19:36689497|36692392:+	ZNF567	zinc finger protein 567	protein coding gene	no	.	2.440	0.247	0.000	0.009(90)	0.004(3)	0(0)	non tumor-specific	nAS	no
PDGFC_LS011	chr4:156772893|156810837:-	PDGFC	platelet derived growth factor C	protein coding gene	no	ENST00000502773.5;ENST00000274071.6;ENST00000422544.2;ENST00000511985.1	28.319	22.120	11.579	0.93(8909)	0.989(694)	0.944(16407)	non tumor-specific	exon_skip;mutex_exons	yes
SP8_LS001	chr7:20785795|20785948:-	SP8	Sp8 transcription factor	protein coding gene	no	ENST00000361443.4	1.466	0.193	0.830	0.084(805)	0.057(40)	0.034(585)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_PLXNB2_LS0200	chr22:50284336|50284573:-	PLXNB2	plexin B2	protein coding gene	no	.	18.187	2.337	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
AC105393.1_LS002	chr2:421264|421838:+	AC105393.1	-	lncRNA gene	no	ENST00000449621.1	0.023	0.000	0.656	0.001(12)	0(0)	0(6)	non tumor-specific	nAS	yes
ZNF692_LS044	chr1:248858321|248859015:-	ZNF692	zinc finger protein 692	protein coding gene	no	ENST00000366471.7;ENST00000528141.5;ENST00000534660.5;ENST00000534456.1	0.036	0.037	0.972	0.317(3039)	0.184(129)	0.537(9334)	non tumor-specific	alt_5prime	yes
VKORC1_LS009	chr16:31093482|31094557:-	VKORC1	vitamin K epoxide reductase complex subunit 1	protein coding gene	no	ENST00000300851.10	0.364	1.512	1.737	0.85(8144)	0.859(603)	0.784(13634)	non tumor-specific	nAS	yes
DENND4C_LS047	chr9:19369987|19372037:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000380427.5;ENST00000380427.5;ENST00000380427.5	0.814	0.484	2.470	0.688(6595)	0.829(582)	0.789(13723)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
FAM76A_LS009	chr1:27744811|27755195:+	FAM76A	family with sequence similarity 76 member A	protein coding gene	no	ENST00000419687.6;ENST00000234549.11;ENST00000373949.5;ENST00000446647.1	3.901	3.017	2.878	0.919(8807)	0.96(674)	0.914(15894)	non tumor-specific	alt_3prime;exon_skip	yes
PIGP_LS006	chr21:37069624|37072434:-	PIGP	phosphatidylinositol glycan anchor biosynthesis class P	protein coding gene	no	ENST00000360525.8;ENST00000464265.5;ENST00000399102.5;ENST00000399103.5;ENST00000479152.1	53.063	33.930	33.493	0.996(9539)	0.997(700)	0.978(17008)	non tumor-specific	exon_skip	yes
MYLK_LS029	chr3:123722280|123725944:-	MYLK	myosin light chain kinase	protein coding gene	no	ENST00000360772.7;ENST00000354792.9;ENST00000359169.5;ENST00000360304.7;ENST00000464489.5;ENST00000346322.9;ENST00000475616.5;ENST00000514623.1	5.287	9.778	2.853	0.617(5914)	0.833(585)	0.619(10761)	non tumor-specific	nAS	yes
HERC1_LS072	chr15:63718694|63718783:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	ENST00000443617.6;ENST00000560983.1	4.012	4.041	4.851	0.737(7065)	0.882(619)	0.92(15992)	non tumor-specific	nAS	yes
UN_STX18-AS1_LS0038	chr4:4649109|4649370:+	STX18-AS1	STX18 antisense RNA 1 (head to head)	lncRNA gene	no	.	2.472	0.716	0.000	0.039(375)	0.053(37)	0(0)	non tumor-specific	nAS	no
UN_ELK4_LS0023	chr1:205621499|205623676:-	ELK4	ETS transcription factor ELK4	protein coding gene	no	.	1.689	0.083	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PHKG2_LS015	chr16:30753557|30756590:+	PHKG2	phosphorylase kinase catalytic subunit gamma 2	protein coding gene	no	ENST00000564838.5	0.069	0.091	1.802	0.844(8083)	0.771(541)	0.763(13261)	non tumor-specific	alt_3prime;exon_skip	yes
STK33_LS003	chr11:8413692|8435494:-	STK33	serine/threonine kinase 33	protein coding gene	no	ENST00000473980.5;ENST00000486305.6;ENST00000447869.5;ENST00000315204.5;ENST00000396672.5;ENST00000358872.7;ENST00000534493.5	10.225	7.435	7.862	0.62(5936)	0.725(509)	0.807(14023)	non tumor-specific	exon_skip	yes
TNFRSF11A_LS016	chr18:62366760|62368701:+	TNFRSF11A	TNF receptor superfamily member 11a	protein coding gene	no	ENST00000586569.2	7.038	6.769	2.211	0.48(4595)	0.548(385)	0.668(11610)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CTSB_LS0178	chr8:11844996|11845099:+	CTSB	cathepsin B	protein coding gene	no	.	12.340	7.072	0.000	0.014(133)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_TRAC_UP_LS0037	chr14:22507723|22547506:+	TRAC	T cell receptor alpha constant	no	no	.	4.378	1.846	0.000	0.144(1381)	0.141(99)	0(0)	non tumor-specific	nAS	no
BTBD7_LS009	chr14:93261677|93293858:-	BTBD7	BTB domain containing 7	protein coding gene	no	ENST00000355125.3	0.344	0.133	0.666	0.448(4288)	0.618(434)	0.152(2645)	non tumor-specific	exon_skip	yes
RAD54L_LS008	chr1:46250119|46258686:+	RAD54L	RAD54 like	protein coding gene	no	ENST00000463715.5;ENST00000442598.5;ENST00000493985.5;ENST00000371975.8;ENST00000469835.5;ENST00000493032.5;ENST00000487700.1	7.339	1.294	1.948	0.707(6770)	0.256(180)	0.641(11150)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC01106_LS0022	chr2:110375395|110375716:-	LINC01106	long intergenic non-protein coding RNA 1106	lncRNA gene	no	.	1.643	0.472	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_WHRN_LS0022	chr9:114417525|114417701:-	WHRN	whirlin	protein coding gene	no	.	2.743	0.782	0.000	0.034(322)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC073578.2_UP_LS0004	chr12:131463097|131465077:-	AC073578.2	-	lncRNA gene	no	.	3.740	0.444	0.000	0.03(284)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NIN_UP_LS0004	chr14:50937837|50955854:-	NIN	ninein	protein coding gene	no	.	2.242	0.505	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ASCC3_LS0046	chr6:100848707|100858957:-	ASCC3	activating signal cointegrator 1 complex subunit 3	protein coding gene	no	.	2.083	0.255	0.000	0.011(101)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_SEC14L1_LS0018	chr17:77141107|77141572:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.	0.226	0.436	0.000	0.009(83)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
PCBP1-AS1_LS010	chr2:69963500|70051203:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000457076.5	0.004	0.008	0.683	0.209(2002)	0.251(176)	0.048(827)	non tumor-specific	nAS	yes
ARID4B_LS043	chr1:235257225|235260642:-	ARID4B	AT-rich interaction domain 4B	protein coding gene	no	ENST00000366603.6;ENST00000349213.7;ENST00000264183.8;ENST00000421364.5;ENST00000491632.5;ENST00000418304.1;ENST00000466653.1	17.714	11.648	11.254	0.875(8385)	0.966(678)	0.967(16813)	non tumor-specific	exon_skip	yes
UN_C21orf58_LS0028	chr21:46322767|46322947:-	C21orf58	chromosome 21 open reading frame 58	protein coding gene	no	.	1.534	0.404	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
PCF11_LS012	chr11:83171914|83177085:+	PCF11	PCF11 cleavage and polyadenylation factor subunit	protein coding gene	no	ENST00000298281.8;ENST00000530906.1	11.557	9.585	24.744	0.962(9218)	0.993(697)	0.977(16983)	non tumor-specific	exon_skip	yes
ATAD3B_LS006	chr1:1479108|1480867:+	ATAD3B	ATPase family AAA domain containing 3B	protein coding gene	no	ENST00000308647.7;ENST00000472194.6;ENST00000378736.3	43.146	14.289	13.253	0.994(9523)	0.993(697)	0.975(16942)	non tumor-specific	nAS	yes
RNF144A_LS011	chr2:7024516|7030126:+	RNF144A	ring finger protein 144A	protein coding gene	yes	ENST00000320892.10;ENST00000467276.5;ENST00000432850.1	14.250	9.968	7.613	0.913(8748)	0.91(639)	0.958(16653)	non tumor-specific	exon_skip	yes
PC_LS002	chr11:66849370|66849611:-	PC	podocalyxin like	protein coding gene	no	ENST00000529047.5;ENST00000393955.6;ENST00000393958.6;ENST00000393960.5;ENST00000528224.1	61.567	81.957	27.548	0.986(9447)	0.997(700)	0.976(16971)	non tumor-specific	nAS	yes
UN_ACTB_LS0190	chr7:5527835|5528507:+	ACTB	actin beta	protein coding gene	no	.	87.239	18.921	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
HRC_LS002	chr19:49151332|49152310:-	HRC	histidine rich calcium binding protein	protein coding gene	no	ENST00000598858.5	0.068	0.053	1.139	0.077(737)	0.202(142)	0.293(5087)	non tumor-specific	exon_skip	yes
PTCD3_LS040	chr2:86136562|86136982:+	PTCD3	pentatricopeptide repeat domain 3	protein coding gene	no	ENST00000254630.11	103.602	47.323	65.099	0.996(9545)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
MAP4K1_LS035	chr19:38612742|38613880:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	ENST00000591517.5;ENST00000586296.5;ENST00000589130.5;ENST00000396857.6;ENST00000585583.5;ENST00000589002.5;ENST00000592888.5;ENST00000591707.1	9.395	2.241	3.293	0.818(7841)	0.832(584)	0.875(15204)	non tumor-specific	nAS	yes
UN_AC087477.3_UP_LS0001	chr15:96337535|96394307:+	AC087477.3	-	lncRNA gene	no	.	7.763	1.402	0.000	0.009(91)	0.007(5)	0(0)	non tumor-specific	nAS	no
MAST1_LS010	chr19:12848057|12851934:+	MAST1	microtubule associated serine/threonine kinase 1	protein coding gene	no	ENST00000591495.5;ENST00000251472.8;ENST00000588379.5;ENST00000590204.1	3.178	2.513	3.340	0.49(4698)	0.101(71)	0.441(7671)	non tumor-specific	nAS	yes
UN_DSE_LS0035	chr6:116271418|116273507:-	DSE	dermatan sulfate epimerase	protein coding gene	no	.	2.881	0.185	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
SYCE1L_LS001	chr16:77199512|77206441:+	SYCE1L	synaptonemal complex central element protein 1 like	protein coding gene	no	ENST00000378644.4	0.758	0.209	1.736	0.067(644)	0.019(13)	0.487(8464)	non tumor-specific	nAS	yes
UN_C19orf48_LS0058	chr19:50798346|50798517:+	C19orf48	chromosome 19 open reading frame 48	protein coding gene	no	.	1.428	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC22A18_LS0019	chr11:2903489|2916622:+	SLC22A18	solute carrier family 22 member 18	protein coding gene	no	.	10.504	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
CHST6_LS011	chr16:75490769|75494940:-	CHST6	carbohydrate sulfotransferase 6	protein coding gene	no	ENST00000390664.3	1.269	0.604	1.194	0.272(2605)	0.155(109)	0.288(4998)	non tumor-specific	exon_skip	yes
UN_SNX19_LS0035	chr11:130908445|130910018:-	SNX19	sorting nexin 19	protein coding gene	no	.	1.835	1.055	0.000	0.083(799)	0.179(126)	0(0)	non tumor-specific	exon_skip	no
AL136360.2_LS001	chr4:2140021|2140827:+	AL136360.2	-	lncRNA gene	no	ENST00000502636.1	0.366	0.009	0.891	0.014(130)	0.003(2)	0.019(334)	non tumor-specific	nAS	yes
UN_SRP68_LS0015	chr17:76050526|76051077:-	SRP68	signal recognition particle 68	protein coding gene	no	.	4.050	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CLDND1_LS0017	chr3:98517147|98518885:-	CLDND1	claudin domain containing 1	protein coding gene	no	.	12.680	0.810	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_LINC00504_LS0016	chr4:14516806|14518175:+	LINC00504	long intergenic non-protein coding RNA 504	lncRNA gene	no	.	5.878	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
EED_LS008	chr11:86264263|86266083:+	EED	embryonic ectoderm development	protein coding gene	yes	ENST00000263360.10;ENST00000327320.8;ENST00000351625.10;ENST00000525244.5;ENST00000533228.1	17.887	9.168	26.401	0.993(9513)	0.994(698)	0.978(17008)	non tumor-specific	exon_skip;intron_retention	yes
UN_TLR1_LS0019	chr4:38804824|38805112:-	TLR1	toll like receptor 1	protein coding gene	no	.	0.443	0.122	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ARPC1A_LS0019	chr7:99354106|99358369:-	ARPC1A	actin related protein 2/3 complex subunit 1A	protein coding gene	no	.	4.693	0.079	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_CTSB_LS0056	chr8:11843749|11844281:+	CTSB	cathepsin B	protein coding gene	no	.	7.210	1.956	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
LRRC36_LS020	chr16:67363714|67365304:+	LRRC36	leucine rich repeat containing 36	protein coding gene	no	ENST00000569499.6;ENST00000329956.10;ENST00000563189.5;ENST00000561821.1;ENST00000435835.3	0.700	0.100	0.955	0.12(1152)	0.084(59)	0.29(5038)	non tumor-specific	exon_skip	yes
COQ9_LS012	chr16:57456626|57456931:+	COQ9	coenzyme Q9	protein coding gene	no	ENST00000562426.5	0.058	0.186	0.884	0.888(8507)	0.922(647)	0.465(8089)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_MED24_LS0061	chr17:40053380|40053473:-	MED24	mediator complex subunit 24	protein coding gene	no	.	2.921	0.744	0.000	0.019(181)	0.026(18)	0(0)	non tumor-specific	alt_5prime	no
AKR1D1_LS012	chr7:138107311|138107415:+	AKR1D1	aldo-keto reductase family 1 member D1	protein coding gene	no	ENST00000468877.2	2.498	0.088	0.849	0.003(29)	0.013(9)	0.001(25)	non tumor-specific	exon_skip	yes
GBA_LS029	chr1:155244230|155244506:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000473570.5;ENST00000467918.5	3.319	1.782	0.965	0.723(6929)	0.795(558)	0.521(9063)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL158151.4_UP_LS0002	chr9:129109469|129111472:+	AL158151.4	-	lncRNA gene	no	.	1.632	0.043	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
PARP6_LS043	chr15:72265991|72266745:-	PARP6	poly(ADP-ribose) polymerase family member 6	protein coding gene	no	ENST00000569795.5;ENST00000616176.4;ENST00000260376.11;ENST00000413097.6;ENST00000287196.13;ENST00000544520.5;ENST00000565443.5;ENST00000567440.5;ENST00000419739.7;ENST00000565999.5;ENST00000568360.5	7.986	5.387	57.088	0.971(9306)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
ARFRP1_LS018	chr20:63706738|63706999:-	ARFRP1	ADP ribosylation factor related protein 1	protein coding gene	no	ENST00000612256.4;ENST00000619493.4;ENST00000614942.4;ENST00000622789.4;ENST00000618838.4;ENST00000612157.4;ENST00000618568.4	57.764	31.579	53.100	0.996(9541)	0.996(699)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
UN_SSX2IP_UP_LS0012	chr1:84866138|84893483:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	.	1.233	0.495	0.000	0.013(122)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
LINC00345_LS001	chr13:52484284|52484520:-	LINC00345	long intergenic non-protein coding RNA 345	lncRNA gene	no	ENST00000443679.1	0.020	0.004	0.678	0.108(1036)	0.111(78)	0.08(1386)	non tumor-specific	nAS	yes
UN_SLC5A6_LS0042	chr2:27208525|27208614:-	SLC5A6	solute carrier family 5 member 6	protein coding gene	no	.	1.538	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF83_LS002	chr19:52594304|52618936:-	ZNF83	zinc finger protein 83	protein coding gene	no	ENST00000601257.5	0.009	0.001	0.750	0.144(1381)	0.131(92)	0.198(3437)	non tumor-specific	exon_skip	yes
UN_EPOP_UP_LS0009	chr17:38682122|38706054:-	EPOP	elongin BC and polycomb repressive complex 2 associated protein	protein coding gene	no	.	0.955	0.088	0.000	0.008(78)	0.003(2)	0(0)	non tumor-specific	nAS	no
NGEF_LS005	chr2:232884144|232885280:-	NGEF	neuronal guanine nucleotide exchange factor	protein coding gene	no	ENST00000264051.7;ENST00000373552.8;ENST00000424488.5;ENST00000489127.1	25.470	53.028	7.230	0.856(8199)	0.853(599)	0.82(14251)	non tumor-specific	alt_3prime;intron_retention	yes
UN_LDLRAD3_LS0021	chr11:36081778|36098330:+	LDLRAD3	low density lipoprotein receptor class A domain containing 3	protein coding gene	no	.	2.135	0.086	0.000	0.006(54)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLC4A8_LS028	chr12:51469176|51469614:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000546663.1	0.240	0.000	0.678	0.003(24)	0(0)	0.003(45)	non tumor-specific	nAS	yes
OTOF_LS018	chr2:26468474|26470593:-	OTOF	otoferlin	protein coding gene	no	ENST00000338581.10;ENST00000339598.7;ENST00000402415.8;ENST00000272371.6;ENST00000403946.7;ENST00000646318.1	3.460	0.640	1.131	0.055(523)	0.023(16)	0.391(6802)	non tumor-specific	nAS	yes
UN_ASB16-AS1_LS0018	chr17:44180271|44180388:+	ASB16-AS1	ASB16 antisense RNA 1	lncRNA gene	no	.	1.125	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DUSP16_LS0029	chr12:12521463|12542228:-	DUSP16	dual specificity phosphatase 16	protein coding gene	no	.	2.124	0.743	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RNU7-173P_UP_LS0024	chr20:47844701|47846085:-	RNU7-173P	RNA, U7 small nuclear 173 pseudogene	small non-coding RNA gene	no	.	8.453	0.117	0.000	0.018(172)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATF7IP2_UP_LS0004	chr16:10285687|10297089:+	ATF7IP2	activating transcription factor 7 interacting protein 2	protein coding gene	no	.	5.134	0.251	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
TMEM63C_LS015	chr14:77236732|77238694:+	TMEM63C	transmembrane protein 63C	protein coding gene	no	ENST00000298351.4	5.803	2.603	3.304	0.314(3004)	0.291(204)	0.512(8891)	non tumor-specific	nAS	yes
SLC35C2_LS024	chr20:46357702|46358387:-	SLC35C2	solute carrier family 35 member C2	protein coding gene	no	ENST00000484318.5;ENST00000481809.1	0.498	0.426	2.934	0.925(8864)	0.929(652)	0.934(16231)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
RASGRF2_LS019	chr5:81123767|81127074:+	RASGRF2	Ras protein specific guanine nucleotide releasing factor 2	protein coding gene	no	ENST00000265080.8;ENST00000503795.1	3.629	3.776	2.838	0.355(3397)	0.591(415)	0.812(14113)	non tumor-specific	nAS	yes
IQSEC1_LS014	chr3:12924742|12935448:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	ENST00000273221.8;ENST00000646269.1;ENST00000618604.4;ENST00000648114.1;ENST00000613206.1;ENST00000648386.1;ENST00000647458.1	19.737	22.227	23.028	0.917(8788)	0.972(682)	0.978(17001)	non tumor-specific	nAS	yes
ELOC_LS008	chr8:73959818|73966150:-	ELOC	elongin C	protein coding gene	no	.;.	4.734	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
DECR2_LS012	chr16:406397|406736:+	DECR2	2,4-dienoyl-CoA reductase 2	protein coding gene	no	ENST00000631605.1	2.798	0.422	1.146	0.014(138)	0.009(6)	0.573(9958)	non tumor-specific	nAS	yes
LRCH3_LS019	chr3:197852620|197854392:+	LRCH3	leucine rich repeats and calponin homology domain containing 3	protein coding gene	no	ENST00000438796.6;ENST00000428136.2;ENST00000414675.6;ENST00000441090.6;ENST00000334859.8;ENST00000425562.6;ENST00000461674.5;ENST00000452660.5;ENST00000433298.5;ENST00000481048.5;ENST00000438796.6;ENST00000428136.2;ENST00000414675.6;ENST00000441090.6;ENST00000334859.8;ENST00000425562.6;ENST00000461674.5;ENST00000452660.5;ENST00000433298.5;ENST00000481048.5	10.352	6.228	11.847	0.967(9261)	0.986(692)	0.975(16940)	non tumor-specific	alt_3prime;exon_skip	yes
IFT140_LS015	chr16:1554040|1557935:-	IFT140	intraflagellar transport 140	protein coding gene	no	ENST00000439987.6	0.682	0.271	1.319	0.64(6131)	0.655(460)	0.622(10809)	non tumor-specific	nAS	yes
UN_AC012085.1_LS0007	chr12:93640992|93641240:-	AC012085.1	-	pseudogene	no	.	26.884	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VKORC1_LS0013	chr16:31091020|31094569:+	VKORC1	vitamin K epoxide reductase complex subunit 1	protein coding gene	no	.	0.812	0.219	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
GALM_LS002	chr2:38666351|38729556:+	GALM	galactose mutarotase	protein coding gene	no	ENST00000410063.5	0.394	0.280	0.616	0.703(6735)	0.828(581)	0.014(247)	non tumor-specific	exon_skip	yes
GTF3C3_LS013	chr2:196784929|196785441:-	GTF3C3	general transcription factor IIIC subunit 3	protein coding gene	no	ENST00000263956.7;ENST00000448087.5;ENST00000409364.3	23.021	12.503	16.034	0.966(9255)	0.986(692)	0.974(16933)	non tumor-specific	nAS	yes
LIPF_LS013	chr10:88676280|88678445:+	LIPF	lipase F, gastric type	protein coding gene	no	ENST00000394375.7;ENST00000608620.5;ENST00000238983.8;ENST00000355843.2;ENST00000496797.1	698.598	4011.508	6.010	0.071(681)	0.117(82)	0.623(10829)	non tumor-specific	exon_skip	yes
SUSD4_LS017	chr1:223360311|223363278:-	SUSD4	sushi domain containing 4	protein coding gene	no	ENST00000342943.3	0.526	0.313	0.952	0.149(1432)	0.175(123)	0.166(2886)	non tumor-specific	exon_skip;mutex_exons	yes
UN_GANC_LS0036	chr15:42327442|42330576:+	GANC	glucosidase alpha, neutral C	protein coding gene	no	.	1.873	0.045	0.000	0.017(161)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
LINC00381_LS001	chr13:74426418|74434503:+	LINC00381	long intergenic non-protein coding RNA 381	lncRNA gene	no	ENST00000649990.1;ENST00000423629.1	2.214	0.000	0.912	0.013(124)	0(0)	0.022(389)	non tumor-specific	nAS	yes
UN_CD44_LS0051	chr11:35230709|35231046:-	CD44	CD44 molecule (Indian blood group)	protein coding gene	yes	.	3.289	0.371	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC104663.1_LS0001	chr4:107266419|107301489:+	AC104663.1	-	lncRNA gene	no	.	4.388	0.086	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MGRN1_LS0086	chr16:4689659|4689693:+	MGRN1	mahogunin ring finger 1	protein coding gene	no	.	17.118	0.728	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
AL139021.1_LS001	chr14:58398930|58427064:+	AL139021.1	-	lncRNA gene	no	ENST00000556734.1	0.120	0.048	0.576	0.056(538)	0.033(23)	0.003(45)	non tumor-specific	nAS	yes
AL157392.3_LS001	chr10:13631363|13632560:+	AL157392.3	-	lncRNA gene	no	ENST00000601075.5;ENST00000617260.4	0.172	0.028	0.667	0.007(70)	0.016(11)	0.002(43)	non tumor-specific	nAS	yes
GAL3ST1_LS007	chr22:30557401|30564825:-	GAL3ST1	galactose-3-O-sulfotransferase 1	protein coding gene	no	ENST00000402321.5	0.381	0.112	0.998	0.079(755)	0.094(66)	0.045(780)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BCL2L1_LS0050	chr20:31664890|31665178:+	BCL2L1	BCL2 like 1	protein coding gene	yes	.	0.983	0.327	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
SYNC_LS009	chr1:32696044|32702950:-	SYNC	syncoilin, intermediate filament protein	protein coding gene	no	ENST00000426909.1	0.081	0.047	0.639	0.273(2617)	0.45(316)	0.099(1714)	non tumor-specific	alt_5prime	yes
LINC00958_LS001	chr11:12962763|12965108:-	LINC00958	long intergenic non-protein coding RNA 958	lncRNA gene	no	ENST00000527945.2	5.042	1.707	1.939	0.404(3871)	0.389(273)	0.181(3149)	non tumor-specific	nAS	yes
IGHM_LS005	chr14:105855815|105855906:-	IGHM	immunoglobulin heavy constant mu	no	no	ENST00000637539.2;ENST00000390559.6	77.184	43.487	6.114	0.907(8686)	0.964(677)	0.839(14581)	non tumor-specific	nAS	yes
UN_FAM110A_LS0003	chr20:834082|844708:+	FAM110A	family with sequence similarity 110 member A	protein coding gene	no	.	2.171	0.121	0.000	0.034(322)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
DAZ4_LS003	chrY:24841243|24841804:+	DAZ4	deleted in azoospermia 4	protein coding gene	no	ENST00000415508.6;ENST00000449750.7;ENST00000382314.6;ENST00000382432.9;ENST00000440066.6;ENST00000634662.1;ENST00000382296.4	2.749	0.222	0.000	0.006(54)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_AC233300.1_UP_LS0001	chrX:48890697|48898492:+	AC233300.1	-	lncRNA gene	no	.	3.002	0.638	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
TCP11_LS012	chr6:35128419|35129062:-	TCP11	t-complex 11	protein coding gene	no	ENST00000479418.6;ENST00000445851.6	0.111	0.000	0.643	0.001(7)	0(0)	0.002(33)	non tumor-specific	exon_skip	yes
ENTPD1-AS1_LS006	chr10:95876660|95897558:-	ENTPD1-AS1	ENTPD1 antisense RNA 1	lncRNA gene	no	ENST00000452942.6	0.345	0.239	1.139	0.479(4590)	0.585(411)	0.619(10751)	non tumor-specific	nAS	yes
UN_LINC00621_LS0024	chr13:22909956|22910863:-	LINC00621	long intergenic non-protein coding RNA 621	lncRNA gene	no	.	1.682	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
DENND4C_LS037	chr9:19357154|19357965:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000434457.6;ENST00000602925.5;ENST00000380437.8;ENST00000494124.2;ENST00000380427.5;ENST00000361024.6	27.322	25.468	21.726	0.947(9072)	0.986(692)	0.971(16872)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
TP53BP1_LS028	chr15:43446590|43446766:-	TP53BP1	tumor protein p53 binding protein 1	protein coding gene	yes	ENST00000411772.5;ENST00000605155.1	0.281	0.158	2.009	0.49(4690)	0.534(375)	0.771(13405)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
YBEY_LS010	chr21:46287123|46291334:+	YBEY	ybeY metalloendoribonuclease	protein coding gene	no	ENST00000397701.8;ENST00000468924.5;ENST00000329319.7;ENST00000492864.1;ENST00000397691.1	51.791	26.710	24.725	0.996(9539)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
JCHAIN_LS009	chr4:70666514|70681778:-	JCHAIN	joining chain of multimeric IgA and IgM	protein coding gene	no	ENST00000470866.1	0.400	2.701	0.660	0.561(5372)	0.717(503)	0.007(114)	non tumor-specific	nAS	yes
EIF2B4_LS012	chr2:27367559|27368372:-	EIF2B4	eukaryotic translation initiation factor 2B subunit delta	protein coding gene	no	.;.	11.740	0.300	0.000	0.001(9)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
PBX1_LS012	chr1:164590434|164792494:+	PBX1	PBX homeobox 1	protein coding gene	yes	ENST00000496120.6	0.004	0.008	0.671	0.206(1970)	0.319(224)	0.037(639)	non tumor-specific	exon_skip	yes
MADD_LS008	chr11:47269906|47273827:+	MADD	MAP kinase activating death domain	protein coding gene	yes	ENST00000444117.5	0.454	0.321	1.433	0.621(5948)	0.708(497)	0.721(12530)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LEO1_LS010	chr15:51958826|51959899:-	LEO1	LEO1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000299601.9	49.570	25.673	20.464	0.992(9501)	0.997(700)	0.977(16986)	non tumor-specific	alt_3prime;exon_skip	yes
DNAH8_LS053	chr6:38872782|38872906:+	DNAH8	dynein axonemal heavy chain 8	protein coding gene	no	ENST00000327475.10;ENST00000449981.6;ENST00000359357.7	10.189	0.383	0.914	0.048(461)	0.038(27)	0.094(1637)	non tumor-specific	alt_3prime	yes
NALCN-AS1_LS003	chr13:101049365|101055157:+	NALCN-AS1	NALCN antisense RNA 1	lncRNA gene	no	ENST00000457843.1	3.146	0.087	0.723	0.004(39)	0.001(1)	0.034(583)	non tumor-specific	nAS	yes
RP9P_LS002	chr7:32918372|32921339:-	RP9P	RP9 pseudogene	pseudogene	no	ENST00000450133.5;ENST00000381639.3	17.534	8.394	21.940	0.98(9387)	0.977(686)	0.978(16991)	non tumor-specific	nAS	yes
UN_GPAT4_LS0024	chr8:41609485|41609784:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	.	6.676	1.509	0.000	0.003(28)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
KBTBD11-OT1_LS002	chr8:1763941|1770932:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1	0.693	0.371	0.785	0.052(498)	0.125(88)	0.296(5150)	non tumor-specific	alt_5prime	yes
NASP_LS033	chr1:45615471|45616337:+	NASP	nuclear autoantigenic sperm protein	protein coding gene	no	ENST00000537798.5;ENST00000350030.7;ENST00000372052.8;ENST00000351223.7;ENST00000530073.5;ENST00000481782.1;ENST00000531612.5;ENST00000534450.1	180.608	66.545	184.817	0.999(9572)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_CCR3_LS0004	chr3:46163862|46189589:+	CCR3	C-C motif chemokine receptor 3	protein coding gene	no	.	2.317	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AIFM3_LS004	chr22:20966546|20967805:+	AIFM3	apoptosis inducing factor mitochondria associated 3	protein coding gene	no	ENST00000441376.6;ENST00000472575.5	0.960	1.502	1.836	0.188(1806)	0.118(83)	0.277(4810)	non tumor-specific	exon_skip	yes
UN_ACO1_LS0013	chr9:32405301|32405485:+	ACO1	aconitase 1	protein coding gene	no	.	1.376	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UBAP1L_LS005	chr15:65094576|65099505:-	UBAP1L	ubiquitin associated protein 1 like	protein coding gene	no	ENST00000559089.5;ENST00000502113.2;ENST00000559089.5;ENST00000502113.2;ENST00000559089.5;ENST00000502113.2	0.224	0.188	2.931	0.335(3213)	0.355(249)	0.893(15526)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL162632.2_UP_LS0001	chr14:45705995|45706290:-	AL162632.2	-	pseudogene	no	.	1.650	0.353	0.000	0.015(144)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_C1orf116_LS0002	chr1:207019286|207019342:+	C1orf116	chromosome 1 open reading frame 116	protein coding gene	no	.	5.743	0.774	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	nAS	no
AHNAK2_LS059	chr14:104944944|104949895:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.;.;.	1.558	0.264	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
GABRB3_LS007	chr15:26583414|26621314:-	GABRB3	gamma-aminobutyric acid type A receptor subunit beta3	protein coding gene	no	ENST00000628124.2;ENST00000311550.9;ENST00000622697.4;ENST00000541819.6;ENST00000635832.1;ENST00000635994.1;ENST00000299267.8;ENST00000636466.1;ENST00000638099.1;ENST00000400188.7;ENST00000555632.5;ENST00000555094.5;ENST00000545868.4	9.332	9.480	2.100	0.419(4014)	0.708(497)	0.64(11133)	non tumor-specific	exon_skip	yes
GTSF1_LS014	chr12:54471277|54472144:-	GTSF1	gametocyte specific factor 1	protein coding gene	no	ENST00000549083.1	0.029	0.000	0.674	0.014(136)	0(0)	0.003(45)	non tumor-specific	nAS	yes
PRIM2_LS013	chr6:57537625|57586996:+	PRIM2	DNA primase subunit 2	protein coding gene	no	ENST00000550475.2	0.649	0.224	0.772	0.522(4998)	0.395(277)	0.265(4613)	non tumor-specific	nAS	yes
UN_CYB5R3_LS0027	chr22:42619113|42619164:+	CYB5R3	cytochrome b5 reductase 3	protein coding gene	no	.	4.917	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
RNF157_LS021	chr17:76165545|76166461:-	RNF157	ring finger protein 157	protein coding gene	no	ENST00000269391.10;ENST00000647930.1;ENST00000319945.10;ENST00000591615.1	6.704	5.122	4.769	0.682(6531)	0.714(501)	0.862(14990)	non tumor-specific	exon_skip	yes
FAR2P4_LS010	chr2:131302279|131303037:+	FAR2P4	fatty acyl-CoA reductase 2 pseudogene 4	pseudogene	no	ENST00000425399.1	2.125	0.069	1.005	0.09(866)	0.021(15)	0.049(850)	non tumor-specific	nAS	yes
FP475955.2_LS001	chr21:6905165|6906517:+	FP475955.2	-	lncRNA gene	no	ENST00000623720.1	0.061	0.015	0.955	0.017(166)	0.019(13)	0.001(10)	non tumor-specific	nAS	yes
CDR2L_LS004	chr17:75002228|75003183:+	CDR2L	cerebellar degeneration related protein 2 like	protein coding gene	no	ENST00000337231.5	31.079	15.766	13.920	0.94(9008)	0.959(673)	0.931(16181)	non tumor-specific	nAS	yes
UN_PER1_LS0037	chr17:8143614|8143649:+	PER1	post-GPI attachment to proteins phospholipase 3	protein coding gene	no	.	4.631	0.961	0.000	0.003(28)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_RPL31P52_UP_LS0004	chr12:120469714|120495823:-	RPL31P52	ribosomal protein L31 pseudogene 52	pseudogene	no	.	0.831	0.347	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SMAD6_LS0017	chr15:66704075|66710395:+	SMAD6	SMAD family member 6	protein coding gene	no	.	0.899	0.652	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
LINC00937_LS007	chr12:8370429|8390287:-	LINC00937	long intergenic non-protein coding RNA 937	lncRNA gene	no	ENST00000539348.5	0.463	0.107	0.750	0.045(433)	0.019(13)	0.027(470)	non tumor-specific	nAS	yes
UN_ABHD12_LS0096	chr20:25300861|25302241:+	ABHD12	abhydrolase domain containing 12, lysophospholipase	protein coding gene	no	.	3.407	0.578	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL356124.1_LS005	chr6:129540542|129546395:-	AL356124.1	-	lncRNA gene	no	ENST00000430296.5;ENST00000419061.1	0.104	0.017	0.677	0.036(348)	0.019(13)	0.054(939)	non tumor-specific	nAS	yes
AC113133.1_LS002	chr8:41661709|41664087:+	AC113133.1	-	lncRNA gene	no	ENST00000520418.1	0.224	0.068	1.358	0.075(723)	0.098(69)	0.205(3564)	non tumor-specific	nAS	yes
UN_RPF2_LS0017	chr6:111008137|111011832:+	RPF2	ribosome production factor 2 homolog	protein coding gene	no	.	1.555	0.002	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MOCOS_LS017	chr18:36257073|36260037:+	MOCOS	molybdenum cofactor sulfurase	protein coding gene	no	ENST00000261326.5;ENST00000588132.1	12.157	9.868	4.906	0.893(8554)	0.96(674)	0.796(13835)	non tumor-specific	exon_skip	yes
MFAP2_LS008	chr1:16976923|16977109:-	MFAP2	microfibril associated protein 2	protein coding gene	no	ENST00000375534.7;ENST00000375535.3;ENST00000476788.5;ENST00000478684.5;ENST00000492598.1	150.875	35.191	32.165	0.939(9001)	0.967(679)	0.872(15162)	non tumor-specific	exon_skip	yes
ANKRD40CL_LS003	chr17:50763557|50766874:-	ANKRD40CL	ANKRD40 C-terminal like	protein coding gene	no	ENST00000450727.5;ENST00000502517.5	5.562	9.401	3.882	0.145(1390)	0.118(83)	0.053(918)	non tumor-specific	nAS	yes
ENAH_LS025	chr1:225567414|225580167:-	ENAH	ENAH actin regulator	protein coding gene	no	ENST00000391874.2	0.019	0.014	0.623	0.618(5917)	0.661(464)	0.023(393)	non tumor-specific	nAS	yes
INPP5F_LS018	chr10:119798610|119804173:+	INPP5F	inositol polyphosphate-5-phosphatase F	protein coding gene	no	ENST00000649297.1;ENST00000648621.1;ENST00000361976.7;ENST00000649251.1;ENST00000649742.1;ENST00000650623.1;ENST00000647933.1;ENST00000650305.1;ENST00000648661.1;ENST00000648262.1;ENST00000648515.1;ENST00000649454.1;ENST00000649957.1;ENST00000647699.1	6.522	3.732	6.125	0.816(7815)	0.879(617)	0.932(16197)	non tumor-specific	exon_skip	yes
UN_LINC00578_LS0115	chr3:177651630|177665791:+	LINC00578	long intergenic non-protein coding RNA 578	lncRNA gene	no	.	3.096	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
BANK1_LS004	chr4:101422658|101427561:+	BANK1	B cell scaffold protein with ankyrin repeats 1	protein coding gene	no	ENST00000502990.5	0.515	0.042	0.885	0.027(261)	0.001(1)	0(6)	non tumor-specific	nAS	yes
GTF2I_LS065	chr7:74758855|74759548:+	GTF2I	general transcription factor IIi	protein coding gene	no	ENST00000573035.5;ENST00000614986.4;ENST00000621734.4;ENST00000620879.4	168.045	81.100	1.128	0.987(9456)	0.993(697)	0.4(6949)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_SCP2D1_UP_LS0001	chr20:18794106|18794531:+	SCP2D1	SCP2 sterol binding domain containing 1	protein coding gene	no	.	2.214	0.861	0.000	0.067(645)	0.077(54)	0(0)	non tumor-specific	nAS	no
UN_NHLRC2_LS0017	chr10:113901897|113902505:+	NHLRC2	NHL repeat containing 2	protein coding gene	no	.	2.334	0.353	0.000	0.003(31)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
CCDC80_LS003	chr3:112607256|112609978:-	CCDC80	coiled-coil domain containing 80	protein coding gene	no	ENST00000206423.7;ENST00000439685.6;ENST00000479368.1	158.133	135.117	88.292	0.971(9305)	0.98(688)	0.964(16750)	non tumor-specific	exon_skip	yes
UN_AL596442.1_UP_LS0035	chr6:169941678|169941782:+	AL596442.1	-	lncRNA gene	no	.	2.206	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
RAD18_LS010	chr3:8939653|8941467:-	RAD18	RAD18 E3 ubiquitin protein ligase	protein coding gene	no	ENST00000264926.6;ENST00000415439.5	10.733	4.196	2.814	0.914(8760)	0.917(644)	0.873(15167)	non tumor-specific	nAS	yes
UN_WASH8P_LS0058	chr12:18471|19018:-	WASH8P	WAS protein family homolog 8, pseudogene	pseudogene	no	.	6.978	0.574	0.000	0.096(922)	0.021(15)	0(0)	non tumor-specific	nAS	no
CD300C_LS003	chr17:74544947|74545722:-	CD300C	CD300c molecule	protein coding gene	no	ENST00000330793.1	3.728	2.749	1.872	0.712(6824)	0.726(510)	0.638(11093)	non tumor-specific	exon_skip	yes
EGFL7_LS001	chr9:136659630|136664692:+	EGFL7	EGF like domain multiple 7	protein coding gene	no	ENST00000371699.5	0.239	0.139	1.780	0.554(5312)	0.848(595)	0.589(10243)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_MERTK_LS0031	chr2:112003795|112003904:+	MERTK	MER proto-oncogene, tyrosine kinase	protein coding gene	yes	.	3.172	0.786	0.000	0.006(58)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
AC008703.1_LS001	chr5:159485134|159488228:-	AC008703.1	-	lncRNA gene	no	ENST00000637629.1	3.943	0.581	0.754	0.014(134)	0.011(8)	0.031(536)	non tumor-specific	nAS	yes
TLE4_LS049	chr9:79718071|79718722:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	ENST00000496114.5	1.299	0.677	0.812	0.13(1248)	0.199(140)	0.319(5538)	non tumor-specific	exon_skip	yes
UN_ZNF33A_LS0034	chr10:38034400|38054375:+	ZNF33A	zinc finger protein 33A	protein coding gene	no	.	3.071	1.483	0.000	0.154(1471)	0.187(131)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	no
UN_CDT1_LS0007	chr16:88806121|88806449:+	CDT1	chromatin licensing and DNA replication factor 1	protein coding gene	no	.	20.617	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MXD3_LS017	chr5:177310697|177311379:-	MXD3	MAX dimerization protein 3	protein coding gene	no	ENST00000427908.6;ENST00000423571.6;ENST00000439742.6;ENST00000513063.5;ENST00000513169.1	14.573	1.817	13.141	0.981(9400)	0.912(640)	0.974(16926)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
KIF21A_LS037	chr12:39337203|39340165:-	KIF21A	kinesin family member 21A	protein coding gene	no	ENST00000636569.1;ENST00000361961.7;ENST00000552961.5;ENST00000544797.6;ENST00000361418.9;ENST00000541463.6;ENST00000547108.5	19.462	13.705	8.885	0.843(8079)	0.94(660)	0.939(16320)	non tumor-specific	nAS	yes
ANXA6_LS036	chr5:151140243|151157680:-	ANXA6	annexin A6	protein coding gene	no	ENST00000517757.5	0.236	0.201	0.876	0.535(5130)	0.694(487)	0.403(7007)	non tumor-specific	exon_skip	yes
PLCH2_LS035	chr1:2503643|2503922:+	PLCH2	phospholipase C eta 2	protein coding gene	no	ENST00000462379.1	6.377	2.413	4.024	0.155(1484)	0.141(99)	0.513(8910)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02298_UP_LS0027	chr14:105077449|105077550:+	LINC02298	long intergenic non-protein coding RNA 2298	lncRNA gene	no	.	3.026	0.770	0.000	0.047(450)	0.019(13)	0(0)	non tumor-specific	nAS	no
HEATR4_LS017	chr14:73521039|73522272:-	HEATR4	HEAT repeat containing 4	protein coding gene	no	ENST00000553558.5;ENST00000334988.2	1.190	0.304	0.746	0.004(42)	0.007(5)	0.109(1902)	non tumor-specific	exon_skip	yes
UN_AC087500.1_LS0011	chr17:5223484|5235114:+	AC087500.1	-	lncRNA gene	no	.	1.052	0.420	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC008957.1_LS005	chr5:36705851|36725114:-	AC008957.1	-	lncRNA gene	no	ENST00000512329.1;ENST00000508745.1	1.132	0.480	0.900	0.226(2165)	0.242(170)	0.248(4307)	non tumor-specific	nAS	yes
UN_MYH9_LS0518	chr22:36326035|36326568:-	MYH9	myosin heavy chain 9	protein coding gene	yes	.	8.279	9.204	0.000	0.007(64)	0.05(35)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SYNE2_LS0190	chr14:64225633|64225724:-	SYNE2	spectrin repeat containing nuclear envelope protein 2	protein coding gene	no	.	2.577	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GAA_LS0023	chr17:80108405|80108489:+	GAA	glucosidase alpha, acid	protein coding gene	no	.	14.069	0.000	0.000	0.004(42)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_UBP1_LS0030	chr3:33416834|33439736:-	UBP1	upstream binding protein 1	protein coding gene	no	.	2.383	0.125	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
PTTG1IP_LS003	chr21:44851627|44865395:-	PTTG1IP	PTTG1 interacting protein	protein coding gene	yes	ENST00000445724.3	0.050	0.095	0.680	0.303(2904)	0.306(215)	0.168(2921)	non tumor-specific	exon_skip	yes
UN_NAT16_UP_LS0008	chr7:101192907|101195862:-	NAT16	N-acetyltransferase 16 (putative)	protein coding gene	no	.	2.930	1.177	0.000	0.018(174)	0.019(13)	0(0)	non tumor-specific	nAS	no
AMPH_LS007	chr7:38394214|38422421:-	AMPH	amphiphysin	protein coding gene	no	ENST00000325590.9;ENST00000441628.5;ENST00000471913.5;ENST00000467580.5	3.478	2.007	2.966	0.342(3281)	0.504(354)	0.819(14237)	non tumor-specific	exon_skip	yes
UN_LINC02398_LS0002	chr12:20019696|20037883:+	LINC02398	long intergenic non-protein coding RNA 2398	lncRNA gene	no	.	2.281	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
BABAM2_LS011	chr2:28129380|28233143:+	BABAM2	BRISC and BRCA1 A complex member 2	protein coding gene	no	ENST00000379629.7	0.285	0.174	0.734	0.413(3960)	0.288(202)	0.257(4473)	non tumor-specific	exon_skip	yes
AOC4P_LS003	chr17:42868875|42872405:+	AOC4P	amine oxidase copper containing 4, pseudogene	pseudogene	no	ENST00000566825.5;ENST00000563852.1	0.934	1.118	2.524	0.158(1516)	0.546(383)	0.546(9497)	non tumor-specific	nAS	yes
LINC01602_LS002	chr8:57864618|57980894:+	LINC01602	long intergenic non-protein coding RNA 1602	lncRNA gene	no	ENST00000650579.1	4.622	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	nAS	yes
PSMC4_LS004	chr19:39972555|39974294:+	PSMC4	proteasome 26S subunit, ATPase 4	protein coding gene	no	ENST00000157812.6;ENST00000593455.5;ENST00000455878.2;ENST00000601697.5;ENST00000596386.1	220.858	113.522	96.400	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_SERPING1_LS0086	chr11:57611914|57614357:-	SERPING1	serpin family G member 1	protein coding gene	no	.	9.383	5.782	0.000	0.01(92)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAAHP1_LS014	chr1:46455910|46482210:+	FAAHP1	fatty acid amide hydrolase pseudogene 1	pseudogene	no	ENST00000455247.1	0.630	0.181	0.725	0.238(2280)	0.218(153)	0.071(1231)	non tumor-specific	nAS	yes
UN_POLD2P1_UP_LS0008	chr5:92844460|92885986:+	POLD2P1	DNA polymerase delta 2, accessory subunit pseudogene 1	pseudogene	no	.	7.440	0.073	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
SYNCRIP_LS008	chr6:85637356|85640221:-	SYNCRIP	synaptotagmin binding cytoplasmic RNA interacting protein	protein coding gene	no	ENST00000616122.4;ENST00000355238.10;ENST00000369622.7;ENST00000444272.1	118.659	69.941	69.913	0.991(9499)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_TUBB4B_LS0054	chr9:137242620|137242789:-	TUBB4B	tubulin beta 4B class IVb	protein coding gene	no	.	1.492	0.729	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM72D_LS003	chr1:145103131|145111503:+	FAM72D	family with sequence similarity 72 member D	protein coding gene	no	ENST00000400889.2	6.095	0.786	0.857	0.852(8166)	0.53(372)	0.288(5008)	non tumor-specific	nAS	yes
UN_HNF4A_LS0037	chr20:44406232|44407371:+	HNF4A	hepatocyte nuclear factor 4 alpha	protein coding gene	yes	.	3.608	1.898	0.000	0.01(94)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
ANK2_LS051	chr4:113336466|113336577:+	ANK2	ankyrin 2	protein coding gene	no	ENST00000504887.1	0.113	1.086	0.685	0.007(71)	0.11(77)	0.008(137)	non tumor-specific	nAS	yes
ILK_LS019	chr11:6608489|6608884:+	ILK	integrin linked kinase	protein coding gene	yes	ENST00000528995.5;ENST00000528995.5;ENST00000528995.5	0.090	0.117	2.288	0.267(2555)	0.283(199)	0.776(13481)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PITPNM1_LS002	chr11:67493062|67493410:-	PITPNM1	phosphatidylinositol transfer protein membrane associated 1	protein coding gene	no	ENST00000534749.5;ENST00000436757.6;ENST00000527370.5;ENST00000356404.7	65.767	40.961	40.616	0.994(9521)	0.99(695)	0.979(17019)	non tumor-specific	alt_3prime;alt_5prime	yes
FUT3_LS018	chr19:5846629|5851390:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	.;.	3.814	0.085	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
CSGALNACT1_LS012	chr8:19506130|19585166:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000332246.10;ENST00000522573.5	0.500	0.415	1.406	0.171(1643)	0.222(156)	0.596(10353)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ME1_LS009	chr6:83315413|83346173:-	ME1	protocadherin beta 16	protein coding gene	no	ENST00000369705.3	24.280	24.472	23.860	0.87(8332)	0.983(690)	0.968(16824)	non tumor-specific	exon_skip	yes
ANKFY1_LS008	chr17:4172680|4173909:-	ANKFY1	ankyrin repeat and FYVE domain containing 1	protein coding gene	no	.;.	1.075	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_SERP1_LS0043	chr3:150566132|150567693:+	SERP1	stress associated endoplasmic reticulum protein 1	protein coding gene	no	.	4.159	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ARMH1_LS024	chr1:44704173|44723803:+	ARMH1	armadillo like helical domain containing 1	protein coding gene	no	ENST00000648290.1	0.737	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
CACNA1C_LS003	chr12:2115545|2120325:+	CACNA1C	calcium voltage-gated channel subunit alpha1 C	protein coding gene	no	ENST00000335762.9;ENST00000399655.5;ENST00000480911.5;ENST00000399595.5;ENST00000399644.5;ENST00000399638.5;ENST00000399597.5;ENST00000399621.5;ENST00000399637.5;ENST00000399591.5;ENST00000399641.5;ENST00000347598.8;ENST00000399606.5;ENST00000399601.5;ENST00000344100.7;ENST00000399629.5;ENST00000327702.11;ENST00000399649.5;ENST00000402845.7;ENST00000399603.5;ENST00000399634.5;ENST00000399617.5;ENST00000406454.7	1.170	1.768	3.453	0.19(1818)	0.332(233)	0.763(13262)	non tumor-specific	alt_3prime	yes
AC092375.1_LS001	chr16:21939052|21939682:+	AC092375.1	-	pseudogene	no	ENST00000550410.2	2.079	0.000	0.762	0.003(28)	0(0)	0.009(165)	non tumor-specific	nAS	yes
RPTOR_LS028	chr17:80922827|80923490:+	RPTOR	regulatory associated protein of MTOR complex 1	protein coding gene	no	ENST00000306801.7;ENST00000544334.6;ENST00000575542.5;ENST00000576366.1	14.935	8.531	13.713	0.975(9338)	0.989(694)	0.975(16951)	non tumor-specific	alt_5prime;exon_skip	yes
ABLIM3_LS038	chr5:149251428|149252755:+	ABLIM3	actin binding LIM protein family member 3	protein coding gene	no	ENST00000356541.4	0.713	1.019	0.644	0.277(2651)	0.397(279)	0.028(481)	non tumor-specific	nAS	yes
UN_OSBPL9P1_UP_LS0007	chr3:80072784|80155013:+	OSBPL9P1	oxysterol binding protein like 9 pseudogene 1	pseudogene	no	.	1.438	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC010486.1_UP_LS0037	chr5:85635252|85638794:-	AC010486.1	-	lncRNA gene	no	.	1.628	0.000	0.000	0.006(58)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM259_LS0031	chr19:1010275|1010323:+	TMEM259	transmembrane protein 259	protein coding gene	no	.	5.727	0.622	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PMPCB_LS0015	chr7:103312131|103328915:+	PMPCB	peptidase, mitochondrial processing subunit beta	protein coding gene	no	.	2.666	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_IFT43_LS0037	chr14:75980931|75981038:-	IFT43	intraflagellar transport 43	protein coding gene	no	.	0.386	0.052	0.000	0.017(165)	0.017(12)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
TSEN34_LS003	chr19:54190450|54191361:+	TSEN34	tRNA splicing endonuclease subunit 34	protein coding gene	no	ENST00000302937.8	7.922	5.015	7.760	0.962(9221)	0.98(688)	0.947(16460)	non tumor-specific	alt_5prime;intron_retention	yes
RFX4_LS013	chr12:106682054|106696283:+	RFX4	regulatory factor X4	protein coding gene	no	ENST00000539967.6	0.075	0.000	0.913	0.001(8)	0(0)	0.002(33)	non tumor-specific	exon_skip	yes
UN_AC106738.1_LS0004	chr16:54938055|54939124:-	AC106738.1	-	lncRNA gene	no	.	1.785	0.423	0.000	0.008(73)	0.011(8)	0(0)	non tumor-specific	nAS	no
CERS5_LS011	chr12:50133064|50134546:-	CERS5	ceramide synthase 5	protein coding gene	no	ENST00000551697.5;ENST00000553122.5;ENST00000551697.5;ENST00000553122.5;ENST00000551697.5;ENST00000553122.5	0.345	0.644	2.048	0.201(1927)	0.178(125)	0.498(8658)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_ADD3_LS0003	chr10:109996446|110079240:+	ADD3	adducin 3	protein coding gene	no	.	1.501	1.624	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RBM23_LS0015	chr14:22901161|22901213:+	RBM23	RNA binding motif protein 23	protein coding gene	no	.	2.610	0.404	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UQCC1_LS037	chr20:35394196|35410055:-	UQCC1	ubiquinol-cytochrome c reductase complex assembly factor 1	protein coding gene	no	ENST00000495752.1	0.222	0.169	0.762	0.356(3411)	0.427(300)	0.348(6042)	non tumor-specific	exon_skip;mutex_exons	yes
Z99756.1_LS001	chr22:43276011|43281937:+	Z99756.1	-	lncRNA gene	no	ENST00000458463.1	0.079	0.000	0.871	0.006(57)	0(0)	0.006(109)	non tumor-specific	nAS	yes
UN_WRN_LS0035	chr8:31154755|31157371:+	WRN	WRN RecQ like helicase	protein coding gene	no	.	1.627	0.003	0.000	0.012(114)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
PLPPR2_LS002	chr19:11356976|11357619:+	PLPPR2	phospholipid phosphatase related 2	protein coding gene	no	ENST00000591329.5;ENST00000586380.5	0.094	0.300	2.042	0.76(7277)	0.761(534)	0.84(14609)	non tumor-specific	alt_3prime	yes
FAM71F1_LS001	chr7:128709207|128713923:+	FAM71F1	family with sequence similarity 71 member F1	protein coding gene	no	ENST00000485070.5;ENST00000484425.6;ENST00000493738.5;ENST00000469348.5	2.171	0.000	0.731	0.03(290)	0(0)	0.136(2369)	non tumor-specific	nAS	yes
ST3GAL6_LS029	chr3:98782968|98784945:+	ST3GAL6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein coding gene	no	.;.	1.548	0.714	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CSF3R_LS0050	chr1:36480246|36481478:-	CSF3R	colony stimulating factor 3 receptor	protein coding gene	yes	.	11.977	1.833	0.000	0.006(55)	0.009(6)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
ARAF_LS018	chrX:47567131|47567230:+	ARAF	A-Raf proto-oncogene, serine/threonine kinase	protein coding gene	yes	ENST00000290277.10;ENST00000377045.8	98.493	75.285	74.320	0.994(9524)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
TTC37_LS026	chr5:95520818|95522054:-	TTC37	tetratricopeptide repeat domain 37	protein coding gene	no	ENST00000649566.1;ENST00000358746.6;ENST00000507805.5	13.529	10.718	23.750	0.953(9133)	0.984(691)	0.974(16931)	non tumor-specific	exon_skip	yes
UN_CCDC80_LS0008	chr3:112605316|112605425:+	CCDC80	coiled-coil domain containing 80	protein coding gene	no	.	4.710	0.774	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLEKHH1_LS023	chr14:67576005|67576395:+	PLEKHH1	pleckstrin homology, MyTH4 and FERM domain containing H1	protein coding gene	no	ENST00000329153.9;ENST00000558386.5;ENST00000557971.5	6.708	6.365	6.722	0.715(6847)	0.712(500)	0.851(14798)	non tumor-specific	nAS	yes
UN_APOBR_LS0039	chr16:28497508|28497592:+	APOBR	apolipoprotein B receptor	protein coding gene	no	.	4.974	2.649	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
NUP133_LS001	chr1:229442040|229444914:-	NUP133	nucleoporin 133	protein coding gene	no	ENST00000261396.5;ENST00000490352.1	42.644	19.439	45.326	0.986(9447)	0.991(696)	0.979(17019)	non tumor-specific	exon_skip	yes
DAB2IP_LS008	chr9:121699458|121757013:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	ENST00000394340.7;ENST00000259371.6;ENST00000408936.7;ENST00000373782.7	9.264	9.351	10.382	0.897(8596)	0.952(668)	0.921(16006)	non tumor-specific	exon_skip	yes
COL14A1_LS002	chr8:120071165|120105583:+	COL14A1	collagen type XIV alpha 1 chain	protein coding gene	no	ENST00000498051.6	2.578	0.174	0.669	0.001(11)	0.003(2)	0.054(931)	non tumor-specific	nAS	yes
UN_AC016712.1_UP_LS0001	chr2:222695288|222713228:+	AC016712.1	-	pseudogene	no	.	1.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0194	chr14:105624641|105643225:+	AC246787.2	-	lncRNA gene	no	.	120.558	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004253.2_UP_LS0002	chr17:31762902|31771095:+	AC004253.2	-	lncRNA gene	no	.	5.106	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
IL22RA1_LS001	chr1:24121737|24123302:-	IL22RA1	interleukin 22 receptor subunit alpha 1	protein coding gene	no	ENST00000270800.1	10.007	8.124	2.159	0.572(5485)	0.672(472)	0.485(8433)	non tumor-specific	alt_3prime	yes
TVP23B_LS006	chr17:18789435|18797579:+	TVP23B	trans-golgi network vesicle protein 23 homolog B	protein coding gene	no	ENST00000571018.5;ENST00000572845.1	0.857	0.558	0.819	0.914(8758)	0.957(672)	0.37(6424)	non tumor-specific	alt_3prime;exon_skip	yes
DDX60L_LS018	chr4:168396124|168400826:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	ENST00000260184.11;ENST00000511577.5;ENST00000514580.5;ENST00000503190.1;ENST00000505863.1	6.492	4.017	4.681	0.742(7105)	0.781(548)	0.754(13101)	non tumor-specific	alt_3prime	yes
SLC27A6_LS005	chr5:128965689|128965978:+	SLC27A6	solute carrier family 27 member 6	protein coding gene	no	.;.	0.963	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
MMP23B_LS006	chr1:1632913|1633188:+	MMP23B	matrix metallopeptidase 23B	protein coding gene	no	ENST00000479814.5;ENST00000479814.5	0.243	0.204	0.874	0.374(3583)	0.473(332)	0.287(4996)	non tumor-specific	alt_3prime;exon_skip	yes
CPB1_LS001	chr3:148791265|148827654:+	CPB1	carboxypeptidase B1	protein coding gene	no	ENST00000491148.5	0.818	0.400	0.895	0.033(318)	0.01(7)	0.034(587)	non tumor-specific	alt_5prime	yes
UN_AC069114.2_UP_LS0001	chr18:71836783|71837168:+	AC069114.2	-	pseudogene	no	.	3.724	1.395	0.000	0.003(29)	0.017(12)	0(0)	non tumor-specific	nAS	no
UN_LINC00221_LS0016	chr14:106511307|106512490:+	LINC00221	long intergenic non-protein coding RNA 221	lncRNA gene	no	.	23.184	1.724	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL671762.1_UP_LS0502	chr6:31816791|31828722:+	AL671762.1	-	lncRNA gene	no	.	209.442	44.026	0.000	0.006(56)	0.01(7)	0(0)	non tumor-specific	nAS	no
CCDC40_LS031	chr17:80089884|80092079:+	CCDC40	coiled-coil domain containing 40	protein coding gene	no	ENST00000573903.1	0.442	0.004	0.852	0.004(40)	0.001(1)	0.175(3041)	non tumor-specific	exon_skip;mutex_exons	yes
XDH_LS022	chr2:31375554|31377053:-	XDH	xanthine dehydrogenase	protein coding gene	no	ENST00000379416.3	6.160	8.585	1.711	0.401(3840)	0.434(305)	0.265(4614)	non tumor-specific	exon_skip	yes
EFCAB13_LS027	chr17:47374966|47377766:+	EFCAB13	EF-hand calcium binding domain 13	protein coding gene	no	ENST00000331493.6;ENST00000517484.5;ENST00000520776.5	1.488	0.596	4.230	0.314(3011)	0.385(270)	0.846(14703)	non tumor-specific	exon_skip	yes
ASCC2_LS016	chr22:29808185|29809895:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000464287.1	0.040	0.046	0.680	0.575(5512)	0.585(411)	0.017(303)	non tumor-specific	nAS	yes
HKR1_LS044	chr19:37344774|37347190:+	HKR1	zinc finger protein 875	protein coding gene	no	ENST00000324411.8	0.261	0.019	0.660	0.029(278)	0.033(23)	0.063(1096)	non tumor-specific	exon_skip;mutex_exons	yes
KLHL8_LS004	chr4:87170615|87176757:-	KLHL8	kelch like family member 8	protein coding gene	no	ENST00000273963.9;ENST00000498875.6;ENST00000425278.6;ENST00000506985.5;ENST00000512111.1;ENST00000504029.1	10.204	9.298	5.088	0.894(8567)	0.967(679)	0.946(16452)	non tumor-specific	exon_skip	yes
CNTRL_LS010	chr9:121111274|121112459:+	CNTRL	centriolin	protein coding gene	no	ENST00000468952.5	0.144	0.025	0.686	0.053(512)	0.046(32)	0.054(936)	non tumor-specific	nAS	yes
TRIM8_LS002	chr10:102645187|102655080:+	TRIM8	tripartite motif containing 8	protein coding gene	yes	ENST00000462202.3	1.454	1.070	1.804	0.781(7481)	0.835(586)	0.744(12939)	non tumor-specific	exon_skip	yes
OSMR_LS012	chr5:38904024|38904353:+	OSMR	oncostatin M receptor	protein coding gene	no	ENST00000274276.7	26.776	14.780	13.770	0.866(8297)	0.963(676)	0.904(15715)	non tumor-specific	alt_3prime	yes
NFKB1_LS030	chr4:102612606|102613425:+	NFKB1	nuclear factor kappa B subunit 1	protein coding gene	yes	ENST00000226574.8;ENST00000394820.8;ENST00000505458.5;ENST00000600343.5	99.736	62.467	53.744	0.996(9541)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
CYB561A3_LS015	chr11:61353139|61353784:-	CYB561A3	cytochrome b561 family member A3	protein coding gene	no	ENST00000294072.8;ENST00000426130.6;ENST00000540317.5;ENST00000447532.6;ENST00000546151.5;ENST00000536915.5;ENST00000540139.5;ENST00000542361.5;ENST00000537364.5;ENST00000294072.8;ENST00000426130.6;ENST00000540317.5;ENST00000447532.6;ENST00000546151.5;ENST00000536915.5;ENST00000540139.5;ENST00000542361.5;ENST00000537364.5	44.020	29.333	33.595	0.995(9529)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
LHPP_LS002	chr10:124484326|124488422:+	LHPP	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein coding gene	no	ENST00000392757.8;ENST00000368842.9;ENST00000368839.1	43.944	45.440	35.447	0.992(9509)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
GLUD1_LS003	chr10:87057782|87059150:-	GLUD1	glutamate dehydrogenase 1	protein coding gene	no	ENST00000277865.4;ENST00000487058.1	284.661	288.897	151.338	0.997(9551)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
WASHC3_LS018	chr12:102050287|102061248:-	WASHC3	WASH complex subunit 3	protein coding gene	no	.;.	7.616	1.913	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
RAB11FIP2_LS006	chr10:118039440|118040123:-	RAB11FIP2	RAB11 family interacting protein 2	protein coding gene	no	ENST00000355624.7;ENST00000369199.5;ENST00000483413.1	9.226	11.319	7.181	0.879(8423)	0.947(665)	0.942(16366)	non tumor-specific	alt_3prime	yes
UN_FCGBP_LS0090	chr19:39876744|39892947:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	3.829	4.513	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	nAS	no
EIF4E2_LS008	chr2:232558018|232564247:+	EIF4E2	eukaryotic translation initiation factor 4E family member 2	protein coding gene	no	ENST00000258416.7;ENST00000409514.5;ENST00000409098.5;ENST00000409495.5;ENST00000454501.1	126.330	67.288	60.778	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LINC01515_LS019	chr10:65615761|65680960:+	LINC01515	long intergenic non-protein coding RNA 1515	lncRNA gene	no	ENST00000433152.8	0.362	0.303	0.753	0.096(921)	0.114(80)	0.119(2060)	non tumor-specific	nAS	yes
AL390964.1_LS002	chr13:54952393|54979310:+	AL390964.1	-	lncRNA gene	no	ENST00000622486.4;ENST00000616396.1	1.742	0.000	0.786	0.001(8)	0(0)	0.004(74)	non tumor-specific	nAS	yes
DEAF1_LS004	chr11:651407|653962:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	ENST00000527170.5	0.105	0.312	1.469	0.684(6549)	0.687(482)	0.766(13323)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PI4KAP2_LS015	chr22:21480002|21483020:-	PI4KAP2	phosphatidylinositol 4-kinase alpha pseudogene 2	pseudogene	no	ENST00000486209.5;ENST00000463608.5;ENST00000462560.6;ENST00000450651.5;ENST00000360806.9;ENST00000494740.5;ENST00000480319.5;ENST00000467443.5;ENST00000479693.1	22.211	12.530	58.446	0.974(9335)	0.962(675)	0.978(16995)	non tumor-specific	nAS	yes
CDK16_LS026	chrX:47227099|47227160:+	CDK16	cyclin dependent kinase 16	protein coding gene	no	ENST00000523344.5	0.090	0.054	2.069	0.866(8295)	0.846(594)	0.884(15361)	non tumor-specific	alt_3prime;alt_5prime	yes
PCBP3_LS018	chr21:45751086|45751466:+	PCBP3	poly(rC) binding protein 3	protein coding gene	no	ENST00000610200.1;ENST00000423045.2	0.040	0.000	0.933	0(1)	0(0)	0.013(226)	non tumor-specific	nAS	yes
UN_AC112481.1_UP_LS0004	chr12:90314502|90314656:+	AC112481.1	-	lncRNA gene	no	.	3.142	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNF11_LS0015	chr1:51236879|51265877:+	RNF11	ring finger protein 11	protein coding gene	no	.	0.974	0.338	0.000	0.004(39)	0.019(13)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_SYNPO_LS0153	chr5:150650329|150656404:+	SYNPO	synaptopodin	protein coding gene	no	.	8.728	2.926	0.000	0.008(76)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_CCDC88C_LS0024	chr14:91282283|91288270:+	CCDC88C	coiled-coil domain containing 88C	protein coding gene	no	.	1.852	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RAPGEF1_LS0014	chr9:131577157|131577333:+	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	2.358	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
AC063980.1_LS001	chr5:136376606|136396888:-	AC063980.1	-	lncRNA gene	no	ENST00000514282.1	0.058	0.031	0.681	0.002(22)	0.001(1)	0.001(21)	non tumor-specific	nAS	yes
MVK_LS013	chr12:109579946|109581395:+	MVK	mevalonate kinase	protein coding gene	no	ENST00000539335.5;ENST00000546277.5;ENST00000228510.7;ENST00000537237.5;ENST00000539575.4	13.690	11.168	14.026	0.988(9465)	0.996(699)	0.976(16972)	non tumor-specific	exon_skip	yes
AP5S1_LS005	chr20:3822293|3823875:+	AP5S1	adaptor related protein complex 5 subunit sigma 1	protein coding gene	no	ENST00000379573.6	0.578	0.739	1.045	0.83(7952)	0.868(609)	0.617(10721)	non tumor-specific	alt_3prime	yes
BCLAF3_LS017	chrX:19937532|19950753:-	BCLAF3	BCLAF1 and THRAP3 family member 3	protein coding gene	no	ENST00000379687.7;ENST00000472158.5;ENST00000379682.8;ENST00000340625.3	7.228	4.723	6.605	0.856(8206)	0.906(636)	0.966(16792)	non tumor-specific	exon_skip	yes
UN_POLR1A_LS0048	chr2:86038857|86039342:-	POLR1A	RNA polymerase I subunit A	protein coding gene	no	.	2.518	0.520	0.000	0.025(235)	0.027(19)	0(0)	non tumor-specific	alt_5prime	no
SFTPA2_LS008	chr10:79559005|79559969:-	SFTPA2	surfactant protein A2	protein coding gene	no	.;.	27.516	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_TMEM52B_LS0005	chr12:10172416|10175282:+	TMEM52B	transmembrane protein 52B	protein coding gene	no	.	4.155	0.475	0.000	0.019(180)	0.014(10)	0(0)	non tumor-specific	exon_skip	no
SLCO4A1_LS026	chr20:62669078|62685441:+	SLCO4A1	solute carrier organic anion transporter family member 4A1	protein coding gene	no	ENST00000466818.1	0.755	0.344	1.445	0.437(4187)	0.463(325)	0.601(10440)	non tumor-specific	alt_3prime	yes
UNC79_LS055	chr14:93691946|93694335:+	UNC79	unc-79 homolog, NALCN channel complex subunit	protein coding gene	no	ENST00000256339.8;ENST00000555664.5;ENST00000553484.5;ENST00000393151.6;ENST00000621021.1;ENST00000554549.1	5.632	1.063	2.029	0.279(2669)	0.174(122)	0.469(8146)	non tumor-specific	nAS	yes
ARSE_LS015	chrX:2959888|2960378:-	ARSE	arylsulfatase L	protein coding gene	no	ENST00000545496.5;ENST00000496095.1	0.212	1.561	0.921	0.208(1989)	0.252(177)	0.106(1836)	non tumor-specific	exon_skip	yes
WIPI1_LS012	chr17:68434626|68435620:-	WIPI1	WD repeat domain, phosphoinositide interacting 1	protein coding gene	no	ENST00000262139.9;ENST00000589459.5;ENST00000589316.5;ENST00000546360.5;ENST00000591494.5	42.576	29.057	43.776	0.977(9356)	0.996(699)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CD3E_LS0007	chr11:118313835|118314472:-	CD3E	CD3e molecule	protein coding gene	no	.	0.648	0.021	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IGLV3-30_UP_LS0002	chr22:22580270|22605142:+	IGLV3-30	immunoglobulin lambda variable 3-30 (pseudogene)	no	no	.	36.204	1.559	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC02351_UP_LS0053	chr15:98407615|98414147:-	LINC02351	long intergenic non-protein coding RNA 2351	lncRNA gene	no	.	2.909	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TENM3_LS0019	chr4:182449448|182600924:+	TENM3	teneurin transmembrane protein 3	protein coding gene	no	.	2.066	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_ZFHX3_LS0078	chr16:72960194|73048247:-	ZFHX3	zinc finger homeobox 3	protein coding gene	yes	.	1.719	0.216	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_MYO1B_LS0020	chr2:191362371|191363704:+	MYO1B	myosin IB	protein coding gene	no	.	9.881	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_MAP7_UP_LS0003	chr6:136792388|136792645:-	MAP7	microtubule associated protein 7	protein coding gene	no	.	1.237	0.768	0.000	0.126(1208)	0.187(131)	0(0)	non tumor-specific	exon_skip	no
UN_AC034102.4_UP_LS0001	chr12:56116131|56119924:-	AC034102.4	-	lncRNA gene	no	.	1.059	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
GPM6B_LS020	chrX:13807769|13816844:-	GPM6B	glycoprotein M6B	protein coding gene	yes	ENST00000316715.8;ENST00000355135.6	1.879	2.499	3.341	0.149(1423)	0.444(312)	0.535(9305)	non tumor-specific	exon_skip	yes
NFASC_LS020	chr1:204968982|204970616:+	NFASC	neurofascin	protein coding gene	no	ENST00000404977.6;ENST00000339876.10;ENST00000539706.5;ENST00000360049.8;ENST00000403080.5;ENST00000404076.5;ENST00000514644.5;ENST00000401399.5;ENST00000404907.5;ENST00000513543.5;ENST00000504476.5;ENST00000430393.5;ENST00000367173.7;ENST00000512826.5	5.462	6.655	9.824	0.584(5600)	0.805(565)	0.922(16033)	non tumor-specific	alt_5prime	yes
RNF139-AS1_LS003	chr8:124474194|124474286:-	RNF139-AS1	RNF139 antisense RNA 1 (head to head)	lncRNA gene	no	ENST00000519861.1	0.313	0.152	0.713	0.022(213)	0.004(3)	0.122(2128)	non tumor-specific	nAS	yes
UN_PPOX_LS0033	chr1:161172064|161172227:-	PPOX	protoporphyrinogen oxidase	protein coding gene	no	.	15.161	5.784	0.000	0.407(3895)	0.342(240)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PLPPR3_LS004	chr19:814749|814886:-	PLPPR3	phospholipid phosphatase related 3	protein coding gene	no	ENST00000359894.6;ENST00000520876.7;ENST00000517665.2	19.632	12.413	2.883	0.244(2342)	0.259(182)	0.364(6331)	non tumor-specific	nAS	yes
ITGAE_LS020	chr17:3743617|3745764:-	ITGAE	integrin subunit alpha E	protein coding gene	no	ENST00000263087.8	4.868	2.853	1.130	0.341(3265)	0.41(288)	0.303(5259)	non tumor-specific	nAS	yes
ARHGEF39_LS013	chr9:35662741|35662946:-	ARHGEF39	Rho guanine nucleotide exchange factor 39	protein coding gene	no	ENST00000490638.5;ENST00000378387.3	3.901	0.815	1.369	0.714(6845)	0.241(169)	0.528(9186)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RYR1_LS090	chr19:38535392|38535997:+	RYR1	ryanodine receptor 1	protein coding gene	no	ENST00000355481.8;ENST00000359596.7;ENST00000594335.5;ENST00000601514.5;ENST00000596431.5	3.345	2.751	2.050	0.186(1783)	0.081(57)	0.66(11473)	non tumor-specific	exon_skip	yes
UN_MARCH10_LS0036	chr17:62749956|62750646:+	MARCH10	membrane associated ring-CH-type finger 10	protein coding gene	no	.	2.689	0.742	0.000	0.001(14)	0.021(15)	0(0)	non tumor-specific	nAS	no
UN_ZNF473_LS0014	chr19:50042874|50044632:-	ZNF473	zinc finger protein 473	protein coding gene	no	.	6.435	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EVL_LS0073	chr14:100143950|100144043:+	EVL	Enah/Vasp-like	protein coding gene	no	.	14.206	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ABCG1_LS0013	chr21:42291192|42294542:+	ABCG1	ATP binding cassette subfamily G member 1	protein coding gene	no	.	0.220	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	exon_skip	no
THNSL2_LS006	chr2:88170456|88174639:+	THNSL2	threonine synthase like 2	protein coding gene	no	.;.	1.017	0.928	0.000	0.162(1551)	0.244(171)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_EIF3A_LS0045	chr10:119049983|119050521:-	EIF3A	eukaryotic translation initiation factor 6	protein coding gene	no	.	24.679	4.489	0.000	0.004(40)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_ZMIZ2_LS0029	chr7:44760573|44761458:-	ZMIZ2	zinc finger MIZ-type containing 2	protein coding gene	no	.	2.834	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GIPC1_LS0119	chr19:14482787|14491656:-	GIPC1	GIPC PDZ domain containing family member 1	protein coding gene	no	.	11.020	4.658	0.000	0.122(1169)	0.147(103)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
KDM4C_LS003	chr9:6793132|6805599:+	KDM4C	lysine demethylase 4C	protein coding gene	yes	ENST00000536108.5;ENST00000438023.5;ENST00000401787.7;ENST00000381306.7;ENST00000381309.7;ENST00000489243.5;ENST00000543771.5	6.045	5.134	11.655	0.934(8948)	0.979(687)	0.973(16919)	non tumor-specific	alt_3prime;exon_skip	yes
MIA2_LS034	chr14:39314799|39315683:+	MIA2	MIA SH3 domain ER export factor 2	protein coding gene	yes	ENST00000553728.1;ENST00000640607.1;ENST00000341749.7;ENST00000557038.5;ENST00000396165.8;ENST00000396158.6;ENST00000280083.7;ENST00000341502.9;ENST00000556148.5;ENST00000348007.7;ENST00000553352.1	54.574	52.250	23.916	0.985(9436)	0.997(700)	0.979(17013)	non tumor-specific	nAS	yes
SNHG1_LS010	chr11:62853833|62854018:-	SNHG1	small nucleolar RNA host gene 1	lncRNA gene	no	ENST00000539921.5;ENST00000540725.5;ENST00000537925.5;ENST00000537068.5;ENST00000539975.5;ENST00000542112.5;ENST00000541615.5;ENST00000541578.5;ENST00000545688.5;ENST00000544550.5;ENST00000535689.5	63.619	14.592	59.140	0.994(9524)	0.991(696)	0.979(17020)	non tumor-specific	nAS	yes
UN_FBRS_LS0198	chr16:30670273|30670327:-	FBRS	fibrosin	protein coding gene	no	.	3.143	0.374	0.000	0.019(179)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CCM2_LS0016	chr7:45064001|45064465:+	CCM2	CCM2 scaffold protein	protein coding gene	no	.	10.518	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SPTA1_LS013	chr1:158627007|158627625:-	SPTA1	spectrin alpha, erythrocytic 1	protein coding gene	no	ENST00000368147.8;ENST00000643759.1;ENST00000461624.1	2.050	0.172	0.984	0.046(436)	0.021(15)	0.218(3784)	non tumor-specific	nAS	yes
UN_RAPGEF1_LS0117	chr9:131650949|131676557:-	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	3.911	2.286	0.000	0.014(136)	0.027(19)	0(0)	non tumor-specific	nAS	no
MAGED4B_LS020	chrX:52067401|52067486:-	MAGED4B	MAGE family member D4B	protein coding gene	no	ENST00000486010.1	1.410	0.451	0.710	0.528(5054)	0.479(336)	0.013(234)	non tumor-specific	intron_retention	yes
CDON_LS008	chr11:125994389|125994871:-	CDON	cell adhesion associated, oncogene regulated	protein coding gene	yes	ENST00000392693.7;ENST00000531738.5;ENST00000263577.11	6.064	5.262	3.684	0.567(5434)	0.759(533)	0.763(13268)	non tumor-specific	nAS	yes
HCRT_LS001	chr17:42184528|42185345:-	HCRT	hypocretin neuropeptide precursor	protein coding gene	no	ENST00000293330.1	0.214	0.032	0.993	0.039(373)	0.038(27)	0.074(1279)	non tumor-specific	nAS	yes
UN_AC022467.1_UP_LS0003	chr15:48645786|48646104:-	AC022467.1	-	lncRNA gene	no	.	0.659	0.578	0.000	0.005(45)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC5_LS0002	chr11:57668240|57672021:+	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	.	5.244	1.859	0.000	0.005(48)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_GAPDHP1_LS0020	chrX:39787678|39787892:+	GAPDHP1	glyceraldehyde-3-phosphate dehydrogenase pseudogene 1	pseudogene	no	.	1.091	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LINC00365_LS0006	chr13:30107378|30108769:-	LINC00365	long intergenic non-protein coding RNA 365	lncRNA gene	no	.	1.665	0.757	0.000	0.001(12)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_ACTR1A_LS0027	chr10:102470494|102471273:+	ACTR1A	actin related protein 1A	protein coding gene	no	.	1.802	0.273	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SMG1P5_LS012	chr16:30279073|30279693:-	SMG1P5	SMG1 pseudogene 5	pseudogene	no	ENST00000529428.5;ENST00000532983.1	1.363	0.223	0.659	0.531(5090)	0.587(412)	0.034(585)	non tumor-specific	nAS	yes
UN_COQ7_LS0002	chr16:19067737|19068856:+	COQ7	coenzyme Q7, hydroxylase	protein coding gene	no	.	2.566	0.048	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IGHV4-55_LS0002	chr14:106606194|106606318:-	IGHV4-55	immunoglobulin heavy variable 4-55 (pseudogene)	no	no	.	25.908	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WWOX_LS0067	chr16:78608575|78756940:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	2.342	0.624	0.000	0.008(79)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
NNMT_LS005	chr11:114262934|114296428:+	NNMT	nicotinamide N-methyltransferase	protein coding gene	no	ENST00000535401.5;ENST00000535401.5	1.121	2.487	1.677	0.49(4695)	0.738(518)	0.527(9163)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NAPA_LS0053	chr19:47495400|47501457:+	NAPA	napsin A aspartic peptidase	protein coding gene	no	.	0.853	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SEC14L1_LS110	chr17:77215766|77215858:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	5.670	0.298	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
PACSIN2_LS013	chr22:42879169|42882184:-	PACSIN2	protein kinase C and casein kinase substrate in neurons 2	protein coding gene	no	ENST00000337959.8;ENST00000263246.7;ENST00000407585.5;ENST00000403744.7;ENST00000402229.5	127.994	109.181	64.894	0.995(9530)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF28_LS0192	chr19:52840291|52840647:+	ZNF28	zinc finger protein 28	protein coding gene	no	.	2.649	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A9_LS0109	chr7:100866260|100866493:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	.	11.188	1.193	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_VCPKMT_LS0002	chr14:50112719|50113387:-	VCPKMT	valosin containing protein lysine methyltransferase	protein coding gene	no	.	1.536	0.519	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
EFEMP2_LS019	chr11:65868421|65868510:-	EFEMP2	EGF containing fibulin extracellular matrix protein 2	protein coding gene	no	ENST00000531972.5;ENST00000526628.5;ENST00000528176.5;ENST00000307998.10;ENST00000530806.5;ENST00000532084.5;ENST00000531005.5	85.488	73.168	124.668	0.991(9490)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
SNX1_LS019	chr15:64130321|64131687:+	SNX1	sorting nexin 1	protein coding gene	no	ENST00000560829.5;ENST00000380285.7;ENST00000261889.9;ENST00000559844.5;ENST00000560260.5;ENST00000561026.5	170.643	114.272	134.237	0.995(9537)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMEM86A_LS0010	chr11:18702116|18702981:+	TMEM86A	transmembrane protein 86A	protein coding gene	no	.	1.664	0.025	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
VSTM2A_LS004	chr7:54546739|54546947:+	VSTM2A	V-set and transmembrane domain containing 2A	protein coding gene	no	ENST00000466888.5	0.570	0.274	1.167	0.071(681)	0.033(23)	0.062(1079)	non tumor-specific	alt_5prime	yes
UN_HLA-B_LS0285	chr6:31272153|31272617:-	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	1.376	62.906	0.000	0.012(114)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_PPIL3_LS0007	chr2:200881300|200881421:-	PPIL3	peptidylprolyl isomerase like 3	protein coding gene	no	.	0.944	0.359	0.000	0.056(537)	0.046(32)	0(0)	non tumor-specific	exon_skip	no
UN_MICAL3_LS0088	chr22:17842011|17864899:-	MICAL3	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein coding gene	no	.	2.963	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CYBC1_LS030	chr17:82447621|82449174:-	CYBC1	cytochrome b-245 chaperone 1	protein coding gene	no	ENST00000584408.5;ENST00000583359.1	0.166	0.264	0.911	0.861(8252)	0.868(609)	0.489(8497)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AC099342.1_LS002	chr7:20298397|20300059:+	AC099342.1	-	lncRNA gene	no	ENST00000453564.1	0.052	0.000	0.657	0.005(50)	0(0)	0.001(16)	non tumor-specific	nAS	yes
UN_AC244157.2_UP_LS0133	chr22:22881387|22904984:-	AC244157.2	-	pseudogene	no	.	19.325	0.386	0.000	0.007(69)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AJ239322.1_UP_LS0001	chr2:131993830|131994409:-	AJ239322.1	-	lncRNA gene	no	.	6.140	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
AC009446.1_LS003	chr8:71696033|71702215:+	AC009446.1	-	lncRNA gene	no	ENST00000521131.1	0.564	0.000	0.715	0.002(19)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_AP1B1_LS0017	chr22:29328139|29328241:+	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	.	1.508	0.382	0.000	0.019(178)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_UROD_LS0014	chr1:45014836|45014915:+	UROD	uroporphyrinogen decarboxylase	protein coding gene	no	.	27.942	3.966	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLMAP_LS026	chr3:57865292|57890041:+	SLMAP	sarcolemma associated protein	protein coding gene	no	ENST00000383718.7;ENST00000475055.1;ENST00000383718.7;ENST00000475055.1	0.178	0.112	1.290	0.721(6911)	0.832(584)	0.629(10927)	non tumor-specific	alt_3prime;exon_skip	yes
NXPE1_LS012	chr11:114551211|114551383:-	NXPE1	neurexophilin and PC-esterase domain family member 1	protein coding gene	no	ENST00000534921.2;ENST00000536312.5;ENST00000539878.5	1.171	4.825	2.796	0.037(359)	0.068(48)	0.038(659)	non tumor-specific	exon_skip	yes
RGS14_LS001	chr5:177358069|177365963:+	RGS14	regulator of G protein signaling 14	protein coding gene	no	ENST00000408923.7	4.739	2.189	3.012	0.508(4866)	0.517(363)	0.781(13570)	non tumor-specific	nAS	yes
AL109811.1_LS001	chr1:11068713|11070659:+	AL109811.1	-	lncRNA gene	no	ENST00000452378.1	0.215	0.059	0.727	0.083(795)	0.15(105)	0.09(1557)	non tumor-specific	nAS	yes
UN_AC067930.4_UP_LS0004	chr8:143549851|143553130:-	AC067930.4	-	lncRNA gene	no	.	0.721	0.166	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AP003497.2_UP_LS0002	chr11:87359950|87362357:+	AP003497.2	-	lncRNA gene	no	.	2.814	1.184	0.000	0.019(181)	0.026(18)	0(0)	non tumor-specific	nAS	no
LYRM1_LS001	chr16:20900004|20900129:+	LYRM1	LYR motif containing 1	protein coding gene	no	ENST00000564457.1	0.125	0.069	0.658	0.058(559)	0.114(80)	0.015(262)	non tumor-specific	alt_3prime;intron_retention	yes
UN_UVSSA_LS0096	chr4:1394642|1394705:-	UVSSA	UV stimulated scaffold protein A	protein coding gene	no	.	2.264	0.146	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_XRCC5_LS0022	chr2:216135242|216137088:+	XRCC5	X-ray repair cross complementing 5	protein coding gene	yes	.	1.272	5.329	0.000	0.002(15)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_AC004754.1_LS0053	chr16:265128|265192:-	AC004754.1	-	protein coding gene	no	.	3.380	0.828	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_SAPCD2_LS0020	chr9:137066374|137069704:-	SAPCD2	suppressor APC domain containing 2	protein coding gene	no	.	1.665	0.589	0.000	0.243(2326)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_PCBP2P3_UP_LS0005	chr5:92560033|92671484:-	PCBP2P3	poly(rC) binding protein 2 pseudogene 3	pseudogene	no	.	2.131	0.265	0.000	0.009(88)	0.003(2)	0(0)	non tumor-specific	nAS	no
CBWD1_LS019	chr9:150725|152034:-	CBWD1	COBW domain containing 1	protein coding gene	no	ENST00000487575.6;ENST00000498044.6	0.040	0.009	0.695	0.175(1678)	0.155(109)	0.093(1610)	non tumor-specific	exon_skip;mutex_exons	yes
CAPZA1_LS004	chr1:112619883|112647210:+	CAPZA1	capping actin protein of muscle Z-line subunit alpha 1	protein coding gene	no	ENST00000263168.3;ENST00000485542.5;ENST00000476936.5;ENST00000263168.3;ENST00000485542.5;ENST00000476936.5	13.729	13.150	33.641	0.985(9441)	0.991(696)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
ZNF107_LS011	chr7:64684205|64691248:+	ZNF107	zinc finger protein 107	protein coding gene	no	.;.	1.948	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PPP2R5C_LS030	chr14:101831804|101836169:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	ENST00000554442.5;ENST00000557714.1	0.154	0.158	1.574	0.641(6139)	0.745(523)	0.758(13183)	non tumor-specific	exon_skip;mutex_exons	yes
UN_LINC01270_LS0027	chr20:50308951|50311033:+	LINC01270	long intergenic non-protein coding RNA 1270	lncRNA gene	no	.	1.072	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
RING1_LS007	chr6:33210130|33211729:+	RING1	ring finger protein 1	protein coding gene	yes	.;.;.	5.606	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RELCH_LS022	chr18:62261658|62263989:+	RELCH	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	protein coding gene	no	ENST00000644646.1;ENST00000256858.10;ENST00000398130.6;ENST00000587725.5;ENST00000588446.1	15.082	12.217	18.496	0.969(9288)	0.987(693)	0.977(16990)	non tumor-specific	alt_3prime;exon_skip	yes
NEK1_LS023	chr4:169555851|169555932:-	NEK1	NIMA related kinase 1	protein coding gene	no	ENST00000439128.6;ENST00000507142.5;ENST00000509912.5	2.186	2.480	3.139	0.714(6837)	0.893(627)	0.915(15907)	non tumor-specific	exon_skip	yes
APLP1_LS016	chr19:35877825|35878082:+	APLP1	amyloid beta precursor like protein 1	protein coding gene	no	ENST00000221891.8;ENST00000590561.5	15.731	13.325	3.036	0.494(4729)	0.459(322)	0.724(12591)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SEC16A_LS0081	chr9:136477684|136482938:-	SEC16A	SEC16 homolog A, endoplasmic reticulum export factor	protein coding gene	no	.	11.424	6.980	0.000	0.303(2903)	0.48(337)	0(0)	non tumor-specific	nAS	no
ZDHHC1_LS013	chr16:67399456|67400957:-	ZDHHC1	zinc finger DHHC-type containing 1	protein coding gene	no	ENST00000565726.2;ENST00000348579.6;ENST00000562122.1	30.394	21.310	24.465	0.963(9227)	0.987(693)	0.951(16529)	non tumor-specific	alt_3prime;exon_skip	yes
MED1_LS025	chr17:39447904|39451038:-	MED1	mediator complex subunit 1	protein coding gene	no	ENST00000394287.7;ENST00000300651.10;ENST00000577831.5;ENST00000581334.1	9.537	5.714	4.984	0.816(7814)	0.917(644)	0.933(16217)	non tumor-specific	exon_skip	yes
UN_DGKD_LS0066	chr2:233463619|233463688:-	DGKD	diacylglycerol kinase delta	protein coding gene	no	.	20.347	0.529	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_VCAN_LS0031	chr5:83572560|83576660:+	VCAN	versican	protein coding gene	no	.	9.764	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC245519.2_UP_LS0003	chr8:2156783|2192935:+	AC245519.2	-	lncRNA gene	no	.	5.039	0.196	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
TSPAN3_LS003	chr15:77052929|77054178:-	TSPAN3	tetraspanin 3	protein coding gene	no	ENST00000267970.8;ENST00000560715.5;ENST00000346495.6;ENST00000424443.7;ENST00000561277.5;ENST00000559494.1;ENST00000558745.5	608.757	412.694	187.143	0.997(9554)	0.997(700)	0.979(17019)	non tumor-specific	nAS	yes
PRPF4B_LS012	chr6:4056435|4056527:+	PRPF4B	pre-mRNA processing factor 4B	protein coding gene	no	ENST00000463634.6	0.197	0.704	2.055	0.375(3591)	0.305(214)	0.787(13676)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF131_LS016	chr5:43121828|43122039:+	ZNF131	zinc finger protein 131	protein coding gene	no	ENST00000505606.6	0.131	0.143	1.361	0.578(5536)	0.632(444)	0.682(11859)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_ARMH3_LS0024	chr10:101871992|101889412:-	ARMH3	armadillo like helical domain containing 3	protein coding gene	no	.	3.527	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AGPS_LS001	chr2:177393049|177420269:+	AGPS	alkylglycerone phosphate synthase	protein coding gene	no	ENST00000264167.8;ENST00000409888.1	5.712	3.849	6.425	0.92(8818)	0.967(679)	0.96(16694)	non tumor-specific	alt_5prime;exon_skip	yes
NINL_LS018	chr20:25489324|25489875:-	NINL	ninein like	protein coding gene	yes	ENST00000278886.10;ENST00000422516.5;ENST00000489780.5;ENST00000461642.2	10.522	8.602	9.339	0.868(8319)	0.922(647)	0.933(16218)	non tumor-specific	nAS	yes
USP33_LS001	chr1:77697474|77697863:-	USP33	ubiquitin specific peptidase 33	protein coding gene	yes	ENST00000370794.7;ENST00000481579.5;ENST00000357428.5;ENST00000370793.5	61.496	43.441	41.302	0.977(9365)	0.989(694)	0.979(17015)	non tumor-specific	alt_3prime;intron_retention	yes
PSG4_LS002	chr19:43193816|43194340:-	PSG4	pregnancy specific beta-1-glycoprotein 4	protein coding gene	no	ENST00000597374.5	0.424	0.062	0.640	0.019(183)	0.019(13)	0.019(335)	non tumor-specific	nAS	yes
RIF1_LS017	chr2:151435580|151436827:+	RIF1	replication timing regulatory factor 1	protein coding gene	no	ENST00000444746.6;ENST00000453091.6;ENST00000428287.6;ENST00000243326.9;ENST00000414861.6;ENST00000430328.6	8.768	4.134	3.649	0.702(6723)	0.822(577)	0.847(14719)	non tumor-specific	alt_5prime;exon_skip	yes
AOX2P_LS028	chr2:200782438|200791583:+	AOX2P	aldehyde oxidase 2, pseudogene	pseudogene	no	ENST00000467645.1	9.478	0.000	0.723	0.015(142)	0(0)	0.088(1529)	non tumor-specific	nAS	yes
DNAH14_LS043	chr1:225144628|225145326:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	ENST00000430092.5;ENST00000439375.6;ENST00000495456.1	0.452	0.110	1.115	0.196(1881)	0.107(75)	0.388(6749)	non tumor-specific	nAS	yes
DOCK6_LS002	chr19:11199539|11201889:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	ENST00000587734.1	0.330	0.156	0.660	0.674(6461)	0.695(488)	0.013(227)	non tumor-specific	nAS	yes
UN_TIGAR_LS0005	chr12:4321303|4337039:+	TIGAR	TP53 induced glycolysis regulatory phosphatase	protein coding gene	no	.	0.401	0.003	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RAB40C_LS0021	chr16:606419|606486:+	RAB40C	RAB40C, member RAS oncogene family	protein coding gene	no	.	10.026	0.977	0.000	0.011(103)	0.007(5)	0(0)	non tumor-specific	nAS	no
SNX29_LS004	chr16:12003043|12027320:+	SNX29	sorting nexin 29	protein coding gene	no	ENST00000569801.5;ENST00000566228.5;ENST00000564111.5;ENST00000568949.1	6.892	6.649	4.152	0.808(7746)	0.893(627)	0.938(16298)	non tumor-specific	exon_skip	yes
UN_BX255925.2_UP_LS0001	chr9:137272615|137278653:+	BX255925.2	-	pseudogene	no	.	1.815	0.043	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL359081.1_LS001	chr1:191859180|191866820:-	AL359081.1	-	lncRNA gene	no	ENST00000432083.1	0.554	0.004	0.901	0.002(16)	0.001(1)	0.001(12)	non tumor-specific	nAS	yes
UN_LINC00963_LS0023	chr9:129496088|129502397:+	LINC00963	long intergenic non-protein coding RNA 963	lncRNA gene	no	.	2.451	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RN7SKP168_UP_LS0017	chr2:17434146|17441515:-	RN7SKP168	RN7SK pseudogene 168	small non-coding RNA gene	no	.	1.328	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SCYL2_LS0003	chr12:100267818|100282943:+	SCYL2	SCY1 like pseudokinase 2	protein coding gene	no	.	0.992	0.433	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CR381670.1_LS005	chr21:8867063|8873017:+	CR381670.1	-	pseudogene	no	ENST00000624291.1	5.608	1.031	3.131	0.051(491)	0.127(89)	0.777(13504)	non tumor-specific	nAS	yes
SEC14L1_LS252	chr17:77215909|77215959:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.	5.200	0.158	0.000	0.004(41)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_FGF13_LS0026	chrX:139203075|139203416:-	FGF13	fibroblast growth factor 13	protein coding gene	no	.	2.221	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ABHD3_LS0007	chr18:21663899|21702359:-	ABHD3	abhydrolase domain containing 3, phospholipase	protein coding gene	no	.	2.158	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CD5L_LS002	chr1:157833512|157834407:-	CD5L	CD5 molecule like	protein coding gene	no	ENST00000368174.4	8.521	55.864	1.117	0.121(1163)	0.205(144)	0.189(3290)	non tumor-specific	nAS	yes
UN_AC011676.4_UP_LS0003	chr8:141309805|141309966:+	AC011676.4	-	lncRNA gene	no	.	2.024	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
PAF1_LS014	chr19:39389546|39389640:-	PAF1	PAF1 homolog, Paf1/RNA polymerase II complex component	protein coding gene	no	ENST00000221265.7;ENST00000595564.5	108.195	70.460	75.167	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ALDH9A1_LS0021	chr1:165670265|165679442:-	ALDH9A1	aldehyde dehydrogenase 9 family member A1	protein coding gene	no	.	0.974	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EGFLAM_LS0024	chr5:38445451|38445679:+	EGFLAM	EGF like, fibronectin type III and laminin G domains	protein coding gene	no	.	0.391	0.188	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LTB4R2_LS0001	chr14:24305867|24306382:+	LTB4R2	leukotriene B4 receptor 2	protein coding gene	no	.	6.077	0.154	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
SIAH1_LS004	chr16:48362430|48385204:-	SIAH1	siah E3 ubiquitin protein ligase 1	protein coding gene	yes	ENST00000394725.2	8.103	4.667	11.679	0.911(8729)	0.917(644)	0.974(16927)	non tumor-specific	alt_5prime	yes
UN_PSPH_LS0005	chr7:56011869|56013259:-	PSPH	phosphoserine phosphatase	protein coding gene	no	.	10.264	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
MATN3_LS003	chr2:19997259|20000441:-	MATN3	matrilin 3	protein coding gene	no	ENST00000407540.7;ENST00000421259.2	9.520	9.363	2.988	0.618(5920)	0.604(424)	0.753(13094)	non tumor-specific	nAS	yes
USH2A_LS014	chr1:215743335|215758595:-	USH2A	usherin	protein coding gene	no	ENST00000307340.7	9.536	0.000	0.738	0.004(38)	0(0)	0.024(409)	non tumor-specific	nAS	yes
MED12L_LS018	chr3:151193666|151336507:+	MED12L	mediator complex subunit 12L	protein coding gene	no	ENST00000480026.1	0.151	0.006	0.726	0.024(229)	0.004(3)	0.023(399)	non tumor-specific	nAS	yes
SCLY_LS006	chr2:238064469|238073783:+	SCLY	selenocysteine lyase	protein coding gene	no	ENST00000423324.5	0.047	0.035	0.728	0.197(1892)	0.13(91)	0.216(3755)	non tumor-specific	exon_skip	yes
UN_ASNS_LS0006	chr7:97854680|97856690:-	ASNS	asparagine synthetase (glutamine-hydrolyzing)	protein coding gene	no	.	8.992	0.000	0.000	0.004(36)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_OBSCN_LS0068	chr1:228307082|228307259:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.	0.604	0.109	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
CDA_LS009	chr1:20605039|20618452:+	CDA	cytidine deaminase	protein coding gene	no	ENST00000461985.1;ENST00000461985.1	9.430	8.495	2.215	0.746(7143)	0.759(533)	0.723(12562)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LINC02411_UP_LS0010	chr12:127721599|127723506:-	LINC02411	long intergenic non-protein coding RNA 2411	lncRNA gene	no	.	6.135	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
FAM184B_LS017	chr4:17709644|17781159:-	FAM184B	family with sequence similarity 184 member B	protein coding gene	no	ENST00000265018.3	2.154	0.647	1.514	0.098(938)	0.161(113)	0.163(2828)	non tumor-specific	nAS	yes
UN_LRRC47_LS0016	chr1:3780873|3781114:+	LRRC47	leucine rich repeat containing 47	protein coding gene	no	.	2.144	0.827	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF10_LS006	chr12:120539441|120560800:+	RNF10	ring finger protein 10	protein coding gene	no	ENST00000542438.1	0.032	0.022	0.637	0.246(2358)	0.234(164)	0.048(828)	non tumor-specific	nAS	yes
TXNL1_LS030	chr18:56639039|56647449:-	TXNL1	thioredoxin like 1	protein coding gene	no	ENST00000589329.5	0.244	0.636	0.771	0.182(1742)	0.226(159)	0.272(4731)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC00448_LS001	chr13:62732195|62732294:-	LINC00448	long intergenic non-protein coding RNA 448	lncRNA gene	no	ENST00000438352.1	0.408	0.026	0.669	0.004(34)	0.003(2)	0.005(80)	non tumor-specific	nAS	yes
ACTN1_LS038	chr14:68925672|68977378:-	ACTN1	actinin alpha 1	protein coding gene	no	ENST00000376839.7	0.003	0.014	0.674	0.017(166)	0.028(20)	0.115(2005)	non tumor-specific	alt_5prime	yes
DMTF1_LS067	chr7:87188301|87190945:+	DMTF1	cyclin D binding myb like transcription factor 1	protein coding gene	yes	ENST00000331242.11;ENST00000447863.5;ENST00000579677.5;ENST00000425406.5;ENST00000547146.6;ENST00000579850.5;ENST00000432937.6;ENST00000394703.9;ENST00000412139.6;ENST00000480982.5;ENST00000580803.1	30.470	14.033	73.159	0.977(9363)	0.983(690)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC002481_LS002	chr4:6689459|6690299:-	LINC002481	long intergenic non-protein coding RNA 2481	lncRNA gene	no	ENST00000499502.2	0.584	0.180	0.741	0.03(287)	0.037(26)	0.026(456)	non tumor-specific	nAS	yes
UN_GSTM2_LS0135	chr1:109675142|109693386:-	GSTM2	glutathione S-transferase mu 2	protein coding gene	no	.	8.683	0.361	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DIAPH1_LS0066	chr5:141516257|141516393:+	DIAPH1	diaphanous related formin 1	protein coding gene	no	.	2.669	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
ELMO3_LS026	chr16:67202790|67202892:+	ELMO3	engulfment and cell motility 3	protein coding gene	no	ENST00000360833.5;ENST00000393997.6;ENST00000477898.5	60.793	39.551	7.119	0.836(8013)	0.946(664)	0.95(16516)	non tumor-specific	exon_skip;intron_retention	yes
AL589935.1_LS026	chr6:71310642|71314707:-	AL589935.1	-	lncRNA gene	no	ENST00000585945.5	0.006	0.000	0.630	0(1)	0(0)	0.001(13)	non tumor-specific	nAS	yes
TANK_LS056	chr2:161231551|161232733:+	TANK	TRAF family member associated NFKB activator	protein coding gene	yes	ENST00000405852.5	0.145	0.444	0.624	0.029(278)	0.037(26)	0.037(648)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CR392039.5_UP_LS0002	chr21:8987669|8988252:+	CR392039.5	-	pseudogene	no	.	38.686	3.265	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RFXANK_LS0005	chr19:19193099|19193925:+	RFXANK	regulatory factor X associated ankyrin containing protein	protein coding gene	no	.	24.404	4.285	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
SLC12A9_LS016	chr7:100853446|100854156:+	SLC12A9	solute carrier family 12 member 9	protein coding gene	no	ENST00000434158.1	0.149	0.076	0.686	0.337(3232)	0.302(212)	0.149(2585)	non tumor-specific	nAS	yes
UN_AKR1C8P_LS0002	chr10:5160370|5160812:-	AKR1C8P	aldo-keto reductase family 1 member C8, pseudogene	protein coding gene	no	.	2.108	0.648	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_PBX2_LS0036	chr6:32189738|32190082:-	PBX2	PBX homeobox 2 pseudogene 1	protein coding gene	yes	.	14.116	0.103	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_KIAA0319L_LS0012	chr1:35434650|35434698:+	KIAA0319L	KIAA0319 like	protein coding gene	no	.	2.492	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RNA5SP389_UP_LS0151	chr14:106518701|106592796:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	7.236	1.166	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00598_LS034	chr13:40480074|40480236:-	LINC00598	long intergenic non-protein coding RNA 598	lncRNA gene	no	ENST00000637124.1	2.785	0.000	0.628	0(2)	0(0)	0.003(44)	non tumor-specific	nAS	yes
SPTB_LS022	chr14:64784393|64785537:-	SPTB	spectrin beta, erythrocytic	protein coding gene	no	ENST00000556626.5;ENST00000644917.1;ENST00000389722.7;ENST00000389721.10;ENST00000389720.4	4.947	2.835	3.392	0.182(1742)	0.313(220)	0.753(13081)	non tumor-specific	nAS	yes
UN_NPAS4_UP_LS0004	chr11:66416939|66417256:+	NPAS4	neuronal PAS domain protein 4	protein coding gene	no	.	2.162	0.317	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NORAD_LS0089	chr20:36048854|36049450:-	NORAD	non-coding RNA activated by DNA damage	lncRNA gene	no	.	45.649	4.317	0.000	0.016(154)	0.006(4)	0(0)	non tumor-specific	nAS	no
SERPINB6_LS035	chr6:2962029|2971533:-	SERPINB6	serpin family B member 6	protein coding gene	no	ENST00000644388.1	6.707	1.055	0.000	0.004(36)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	yes
RBMX_LS014	chrX:136876655|136879017:-	RBMX	RNA binding motif protein X-linked	protein coding gene	yes	ENST00000568578.5;ENST00000464781.5	0.706	0.605	1.460	0.744(7127)	0.739(519)	0.715(12427)	non tumor-specific	exon_skip	yes
UN_NLRP1_LS0086	chr17:5586368|5619331:-	NLRP1	NLR family pyrin domain containing 1	protein coding gene	no	.	5.851	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	exon_skip	no
DAPP1_LS010	chr4:99863855|99866034:+	DAPP1	dual adaptor of phosphotyrosine and 3-phosphoinositides 1	protein coding gene	no	ENST00000296414.11;ENST00000512369.1;ENST00000296414.11;ENST00000512369.1	11.861	8.118	2.234	0.681(6522)	0.746(524)	0.537(9342)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRBA_LS0009	chr4:150315623|150316355:-	LRBA	LPS responsive beige-like anchor protein	protein coding gene	no	.	4.726	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZBTB7B_LS0071	chr1:155015326|155015630:+	ZBTB7B	zinc finger and BTB domain containing 7B	protein coding gene	no	.	3.033	0.333	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ZNF529-AS1_LS007	chr19:36593931|36594442:+	ZNF529-AS1	ZNF529 antisense RNA 1	lncRNA gene	no	ENST00000592880.6	0.811	0.454	1.923	0.629(6026)	0.614(431)	0.751(13053)	non tumor-specific	nAS	yes
UN_SERINC2_LS0011	chr1:31421679|31434612:-	SERINC2	serine incorporator 2	protein coding gene	no	.	6.215	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC016705.2_UP_LS0001	chr15:80403585|80403709:-	AC016705.2	-	lncRNA gene	no	.	2.748	0.815	0.000	0.108(1031)	0.09(63)	0(0)	non tumor-specific	nAS	no
UN_AC025283.3_LS0001	chr16:3365182|3395501:+	AC025283.3	-	protein coding gene	no	.	3.173	0.320	0.000	0.011(109)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
SLC10A4_LS002	chr4:48485142|48488427:+	SLC10A4	solute carrier family 10 member 4	protein coding gene	no	ENST00000273861.4	8.556	1.510	1.530	0.341(3270)	0.259(182)	0.559(9720)	non tumor-specific	nAS	yes
RNFT1_LS005	chr17:59958444|59958624:-	RNFT1	ring finger protein, transmembrane 1	protein coding gene	no	ENST00000484257.1	1.211	0.413	0.695	0.427(4087)	0.429(301)	0.171(2977)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PKN3_LS0006	chr9:128702939|128705101:+	PKN3	protein kinase N3	protein coding gene	no	.	0.594	0.086	0.000	0.007(68)	0.006(4)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MUC20-OT1_LS103	chr3:195718196|195733150:+	MUC20-OT1	MUC20 overlapping transcript	lncRNA gene	no	ENST00000629721.2;ENST00000628125.2	0.090	0.034	0.705	0.133(1279)	0.165(116)	0.024(421)	non tumor-specific	nAS	yes
RAB27A_LS011	chr15:55234956|55270165:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	ENST00000396307.6;ENST00000336787.5;ENST00000569493.5;ENST00000567380.5	22.928	18.112	15.123	0.977(9356)	0.996(699)	0.964(16761)	non tumor-specific	exon_skip	yes
UN_TUBB4B_LS0149	chr9:137243400|137243615:-	TUBB4B	tubulin beta 4B class IVb	protein coding gene	no	.	2.713	0.794	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC006272.1_LS001	chr19:51839879|51840503:-	AC006272.1	-	lncRNA gene	no	ENST00000596964.1	0.117	0.026	0.682	0.043(415)	0.027(19)	0.039(672)	non tumor-specific	nAS	yes
AC026250.1_LS002	chr11:9757843|9759429:-	AC026250.1	-	lncRNA gene	no	ENST00000500698.1	0.207	0.026	0.680	0.118(1128)	0.047(33)	0.056(982)	non tumor-specific	nAS	yes
PDS5A_LS023	chr4:39879833|39890249:-	PDS5A	PDS5 cohesin associated factor A	protein coding gene	no	ENST00000303538.12	50.640	32.937	19.046	0.922(8829)	0.977(686)	0.975(16947)	non tumor-specific	exon_skip	yes
UN_LCOR_LS0046	chr10:96941303|96941507:-	LCOR	ligand dependent nuclear receptor corepressor	protein coding gene	no	.	1.340	0.341	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	nAS	no
HSPA9_LS010	chr5:138557986|138558553:-	HSPA9	heat shock protein family A (Hsp70) member 9	protein coding gene	no	ENST00000649126.1;ENST00000649578.1;ENST00000297185.8;ENST00000512328.1	322.409	194.323	246.358	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
TNK1_LS007	chr17:7383616|7383709:+	TNK1	tyrosine kinase non receptor 1	protein coding gene	yes	ENST00000570896.5;ENST00000576812.5;ENST00000576207.2	6.866	5.686	5.298	0.768(7361)	0.927(651)	0.793(13779)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CROCC2_LS034	chr2:240991278|240993066:+	CROCC2	ciliary rootlet coiled-coil, rootletin family member 2	protein coding gene	no	ENST00000443866.2	2.154	0.000	0.860	0(3)	0(0)	0.002(42)	non tumor-specific	nAS	yes
UN_STAU1_LS0019	chr20:49114564|49114791:+	STAU1	staufen double-stranded RNA binding protein 1	protein coding gene	no	.	1.716	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC9_LS019	chr19:47271649|47272069:+	CCDC9	coiled-coil domain containing 9	protein coding gene	no	ENST00000643617.1	44.268	32.279	0.000	0.946(9065)	0.979(687)	0(0)	non tumor-specific	nAS	yes
AL163952.1_LS005	chr14:55962087|55962172:+	AL163952.1	-	lncRNA gene	no	ENST00000612704.1	2.590	0.019	0.906	0.016(152)	0.001(1)	0.199(3459)	non tumor-specific	nAS	yes
DNAJC2_LS009	chr7:103319844|103321932:-	DNAJC2	DnaJ heat shock protein family (Hsp40) member C2	protein coding gene	no	ENST00000475065.5;ENST00000379263.7;ENST00000464253.5	85.705	30.733	37.199	0.994(9521)	0.997(700)	0.979(17013)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
USP16_LS026	chr21:29048855|29050092:+	USP16	ubiquitin specific peptidase 21	protein coding gene	no	ENST00000399975.7;ENST00000399976.6;ENST00000334352.8;ENST00000474835.5	89.862	57.755	60.187	0.993(9514)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
MPZ_LS007	chr1:161307424|161309839:-	MPZ	myelin protein zero	protein coding gene	no	ENST00000463290.5;ENST00000533357.4	3.496	2.722	4.423	0.202(1937)	0.554(389)	0.746(12964)	non tumor-specific	nAS	yes
DNM3_LS020	chr1:172308839|172323329:+	DNM3	dynamin 3	protein coding gene	no	ENST00000627582.2	1.081	3.678	2.845	0.058(555)	0.036(25)	0.181(3138)	non tumor-specific	exon_skip	yes
UN_CLEC12A_LS0014	chr12:9953555|9953683:-	CLEC12A	C-type lectin domain family 12 member A	protein coding gene	no	.	3.001	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NPRL3_LS0045	chr16:130591|137286:-	NPRL3	NPR3 like, GATOR1 complex subunit	protein coding gene	no	.	1.071	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
SULT1A1_LS024	chr16:28608859|28609931:-	SULT1A1	sulfotransferase family 1A member 1	protein coding gene	no	ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1;ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1;ENST00000562058.5;ENST00000395609.5;ENST00000314752.11;ENST00000567512.1	26.381	43.649	14.064	0.968(9273)	0.987(693)	0.958(16654)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TTLL5_LS004	chr14:75661026|75663055:+	TTLL5	tubulin tyrosine ligase like 10	protein coding gene	no	ENST00000555290.5	0.017	0.029	0.652	0.605(5792)	0.678(476)	0.057(999)	non tumor-specific	nAS	yes
ACSBG1_LS013	chr15:78182785|78234371:-	ACSBG1	acyl-CoA synthetase bubblegum family member 1	protein coding gene	no	ENST00000560124.5	0.064	0.018	1.022	0.036(343)	0.003(2)	0.031(544)	non tumor-specific	nAS	yes
UN_SEH1L_LS0018	chr18:12984190|12985307:+	SEH1L	SEH1 like nucleoporin	protein coding gene	no	.	8.833	2.102	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
ANLN_LS036	chr7:36443862|36449665:+	ANLN	anillin actin binding protein	protein coding gene	no	ENST00000265748.6;ENST00000396068.6;ENST00000428612.5;ENST00000457743.1	29.463	5.431	4.065	0.91(8719)	0.533(374)	0.795(13821)	non tumor-specific	exon_skip	yes
UN_ITGB5_LS0015	chr3:124763453|124763497:+	ITGB5	integrin subunit beta 5	protein coding gene	no	.	4.291	0.427	0.000	0.009(91)	0.004(3)	0(0)	non tumor-specific	nAS	no
ABCC12_LS013	chr16:48086819|48087940:-	ABCC12	ATP binding cassette subfamily C member 12	protein coding gene	no	ENST00000529504.5	4.492	0.626	1.188	0.008(78)	0.004(3)	0.042(727)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SPATA8_LS002	chr15:96783744|96784153:+	SPATA8	spermatogenesis associated serine rich 1	protein coding gene	no	ENST00000649986.1;ENST00000328504.4	0.049	0.001	0.686	0.013(123)	0.007(5)	0.051(885)	non tumor-specific	alt_5prime;intron_retention	yes
ACACB_LS036	chr12:109235647|109237165:+	ACACB	acetyl-CoA carboxylase beta	protein coding gene	no	ENST00000338432.11;ENST00000377854.9;ENST00000377848.7;ENST00000538526.5	7.627	14.366	18.368	0.72(6898)	0.966(678)	0.963(16742)	non tumor-specific	nAS	yes
UN_EFCAB12_LS0014	chr3:129414459|129415245:-	EFCAB12	EF-hand calcium binding domain 12	protein coding gene	no	.	0.633	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
SERBP1_LS013	chr1:67426285|67429988:-	SERBP1	SERPINE1 mRNA binding protein 1	protein coding gene	no	ENST00000370994.8;ENST00000370995.6;ENST00000361219.10;ENST00000370990.5	295.437	161.372	157.048	0.965(9246)	0.966(678)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_DCP2_LS0017	chr5:113001674|113010756:+	DCP2	decapping mRNA 2	protein coding gene	no	.	1.092	0.107	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_CLUHP1_UP_LS0005	chrY:17689313|17696111:-	CLUHP1	clustered mitochondria homolog pseudogene 1	pseudogene	no	.	15.361	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NR2F6_LS002	chr19:17236065|17240671:-	NR2F6	nuclear receptor subfamily 2 group F member 6	protein coding gene	no	ENST00000291442.3;ENST00000596878.1	66.128	39.536	34.398	0.995(9529)	0.997(700)	0.968(16832)	non tumor-specific	nAS	yes
AC120042.1_LS001	chr8:63013094|63014159:+	AC120042.1	-	lncRNA gene	no	ENST00000524309.1	0.170	0.045	1.153	0.012(118)	0.043(30)	0.01(167)	non tumor-specific	nAS	yes
CFTR_LS019	chr7:117548823|117559464:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000003084.10;ENST00000426809.5	17.029	17.323	1.725	0.216(2072)	0.439(308)	0.219(3806)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RNF123_UP_LS0001	chr3:49673257|49674022:+	RNF123	ring finger protein 123	protein coding gene	no	.	0.938	0.297	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC087855.2_LS001	chr8:34175013|34184487:+	AC087855.2	-	lncRNA gene	no	ENST00000518217.1	0.748	0.220	0.796	0.041(389)	0.044(31)	0.034(598)	non tumor-specific	nAS	yes
UN_PIM3_LS0079	chr22:49963347|49963421:-	PIM3	Pim-3 proto-oncogene, serine/threonine kinase	protein coding gene	yes	.	5.631	0.204	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_CAPN15_LS0092	chr16:551070|551251:+	CAPN15	calpain 15	protein coding gene	no	.	2.165	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
PTPRZ1_LS017	chr7:122012972|122019124:+	PTPRZ1	protein tyrosine phosphatase receptor type Z1	protein coding gene	no	.;.	9.577	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AL137785.1_LS0001	chr14:89013559|89024159:+	AL137785.1	-	lncRNA gene	no	.	3.289	0.204	0.000	0.013(125)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM23_LS022	chr14:22906368|22911328:-	RBM23	RNA binding motif protein 23	protein coding gene	no	ENST00000542016.6;ENST00000557227.5;ENST00000553902.5	0.011	0.015	1.666	0.806(7722)	0.877(616)	0.798(13867)	non tumor-specific	exon_skip	yes
UN_DEFB135_UP_LS0005	chr8:11838573|11839313:+	DEFB135	defensin beta 135	protein coding gene	no	.	4.876	0.350	0.000	0.018(168)	0.009(6)	0(0)	non tumor-specific	nAS	no
MFAP4_LS005	chr17:19386464|19386760:-	MFAP4	microfibril associated protein 4	protein coding gene	no	ENST00000497081.6;ENST00000395592.6;ENST00000299610.4;ENST00000571210.1	69.199	196.885	120.917	0.92(8815)	0.996(699)	0.96(16680)	non tumor-specific	alt_3prime;exon_skip	yes
NXF1_LS013	chr11:62797238|62797318:-	NXF1	nuclear RNA export factor 1	protein coding gene	no	ENST00000531709.6;ENST00000294172.6;ENST00000532297.5;ENST00000530875.5;ENST00000531872.5;ENST00000531579.5	136.147	73.992	171.094	0.993(9510)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
AC011586.2_LS011	chr8:16844255|16914918:-	AC011586.2	-	lncRNA gene	no	ENST00000521411.2	1.038	0.000	0.680	0(4)	0(0)	0.001(24)	non tumor-specific	nAS	yes
UN_ZNF432_LS0036	chr19:52059346|52064494:-	ZNF432	zinc finger protein 432	protein coding gene	no	.	2.474	0.130	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
MASP1_LS031	chr3:187291488|187291628:-	MASP1	mannan binding lectin serine peptidase 1	protein coding gene	no	ENST00000425937.1	0.073	0.056	0.685	0.079(761)	0.071(50)	0.063(1095)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
LINC00511_LS025	chr17:72421066|72421172:-	LINC00511	long intergenic non-protein coding RNA 511	lncRNA gene	no	ENST00000650313.1	1.601	0.022	0.000	0.016(157)	0.001(1)	0(0)	non tumor-specific	nAS	yes
UN_PHACTR4_LS0009	chr1:28371101|28407410:+	PHACTR4	phosphatase and actin regulator 4	protein coding gene	yes	.	1.412	0.146	0.000	0.008(81)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_TENM2_LS0036	chr5:167820675|167821204:+	TENM2	teneurin transmembrane protein 2	protein coding gene	no	.	2.444	0.385	0.000	0.055(524)	0.053(37)	0(0)	non tumor-specific	exon_skip	no
AJAP1_LS001	chr1:4655454|4711900:+	AJAP1	adherens junctions associated protein 1	protein coding gene	yes	ENST00000378190.7;ENST00000378191.4	0.899	0.650	1.279	0.266(2547)	0.375(263)	0.458(7966)	non tumor-specific	exon_skip	yes
NR1H3_LS051	chr11:47261449|47261547:+	NR1H3	nuclear receptor subfamily 1 group H member 3	protein coding gene	no	ENST00000527464.5;ENST00000616973.4;ENST00000529540.5;ENST00000395397.7;ENST00000481020.5;ENST00000481889.6;ENST00000441012.6;ENST00000467728.5	20.032	14.260	30.539	0.984(9423)	0.987(693)	0.979(17015)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FAM99B_LS002	chr11:1684302|1685438:-	FAM99B	family with sequence similarity 99 member B	lncRNA gene	no	ENST00000382166.2	2.968	5.642	11.969	0.016(154)	0.063(44)	0.017(291)	non tumor-specific	nAS	yes
UN_IGF2_LS0181	chr11:2130177|2130220:-	IGF2	insulin like growth factor 2	protein coding gene	yes	.	1076.318	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HTT_LS044	chr4:3178446|3180515:+	HTT	solute carrier family 6 member 4	protein coding gene	no	ENST00000355072.10;ENST00000510626.5;ENST00000513639.5;ENST00000513326.5;ENST00000509043.1	13.245	9.922	9.445	0.936(8966)	0.964(677)	0.963(16741)	non tumor-specific	exon_skip;mutex_exons	yes
UN_FBXO38_LS0020	chr5:148424117|148425579:+	FBXO38	F-box protein 38	protein coding gene	no	.	3.095	1.491	0.000	0.017(163)	0.037(26)	0(0)	non tumor-specific	alt_3prime	no
UN_CADPS_LS0020	chr3:62512768|62513638:-	CADPS	calcium dependent secretion activator	protein coding gene	no	.	3.656	8.624	0.000	0.011(102)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_AC093827.5_LS0004	chr4:86891593|86892194:-	AC093827.5	-	protein coding gene	no	.	0.932	0.173	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_5prime	no
UN_BSPRY_LS0013	chr9:113368842|113369616:+	BSPRY	B-box and SPRY domain containing	protein coding gene	no	.	4.743	0.739	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_PKP4_LS0029	chr2:158621115|158621231:+	PKP4	plakophilin 4	protein coding gene	no	.	13.091	10.926	0.000	0.6(5747)	0.762(535)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_RNA5SP389_UP_LS0178	chr14:106538022|106557155:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	5.271	3.016	0.000	0.061(587)	0.087(61)	0(0)	non tumor-specific	nAS	no
UN_CPNE4_LS0004	chr3:131533572|131688222:+	CPNE4	copine 4	protein coding gene	no	.	2.432	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CCDC7_LS017	chr10:32481782|32491922:+	CCDC7	coiled-coil domain containing 7	protein coding gene	no	ENST00000638889.1	0.561	0.088	0.665	0.01(100)	0.01(7)	0.109(1892)	non tumor-specific	exon_skip	yes
IRX6_LS006	chr16:55327405|55327586:+	IRX6	iroquois homeobox 6	protein coding gene	no	ENST00000290552.7;ENST00000558315.1	6.069	1.867	2.707	0.288(2759)	0.494(347)	0.421(7316)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_FAM193A_LS0048	chr4:2671908|2672121:+	FAM193A	family with sequence similarity 193 member A	protein coding gene	no	.	2.476	0.122	0.000	0.009(91)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF13_LS010	chr3:149813353|149872029:+	RNF13	ring finger protein 13	protein coding gene	no	ENST00000467977.5	0.051	0.056	0.717	0.674(6455)	0.782(549)	0.192(3335)	non tumor-specific	exon_skip;mutex_exons	yes
GOLGA8G_LS009	chr15:28525987|28526255:-	GOLGA8G	golgin A8 family member G	protein coding gene	no	ENST00000382949.7;ENST00000562627.5;ENST00000524859.5;ENST00000569308.5;ENST00000525590.2	0.833	0.000	0.678	0.002(15)	0(0)	0.002(40)	non tumor-specific	nAS	yes
UN_COA1_LS0099	chr7:43650712|43659037:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.	0.624	0.107	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TEPSIN_LS018	chr17:81237459|81238514:-	TEPSIN	TEPSIN adaptor related protein complex 4 accessory protein	protein coding gene	no	ENST00000570854.1;ENST00000570854.1	0.131	0.065	2.928	0.677(6487)	0.644(452)	0.878(15266)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_HCN3_UP_LS0019	chr1:155212401|155232794:+	HCN3	hyperpolarization activated cyclic nucleotide gated potassium channel 3	protein coding gene	no	.	9.585	1.143	0.000	0.015(144)	0.006(4)	0(0)	non tumor-specific	nAS	no
ZNF12_LS004	chr7:6697434|6697689:-	ZNF12	zinc finger protein 12	protein coding gene	no	ENST00000394917.3	1.198	0.627	0.922	0.492(4716)	0.568(399)	0.49(8520)	non tumor-specific	alt_5prime	yes
AC114808.2_LS002	chr2:1159419|1160147:-	AC114808.2	-	lncRNA gene	no	ENST00000428335.1	0.000	1.301	0.643	0(0)	0.001(1)	0.003(45)	non tumor-specific	nAS	yes
UN_CASP8_LS0038	chr2:201276968|201279216:+	CASP8	caspase 8	protein coding gene	yes	.	3.111	0.384	0.000	0.004(37)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_AC093523.1_LS0003	chr5:68944036|68960540:-	AC093523.1	-	lncRNA gene	no	.	1.307	0.481	0.000	0.006(53)	0.003(2)	0(0)	non tumor-specific	nAS	no
PIH1D1_LS005	chr19:49446694|49447024:-	PIH1D1	PIH1 domain containing 1	protein coding gene	no	ENST00000595633.5;ENST00000596916.5;ENST00000594845.5;ENST00000593629.5;ENST00000598889.5;ENST00000596651.5;ENST00000262265.9;ENST00000596049.5;ENST00000601807.5	96.171	51.916	97.643	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
CD180_LS001	chr5:67184585|67185851:-	CD180	CD180 molecule	protein coding gene	no	ENST00000256447.5;ENST00000515027.1	5.453	1.821	1.376	0.701(6712)	0.749(526)	0.427(7417)	non tumor-specific	intron_retention	yes
SHC3_LS009	chr9:89071252|89075109:-	SHC3	SHC adaptor protein 3	protein coding gene	no	ENST00000375835.8	4.597	3.345	2.464	0.292(2795)	0.393(276)	0.682(11858)	non tumor-specific	exon_skip	yes
UN_ANO8_LS0024	chr19:17328264|17328540:-	ANO8	anoctamin 8	protein coding gene	no	.	2.125	0.955	0.000	0.341(3264)	0.155(109)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
CUL2_LS027	chr10:35071339|35090430:-	CUL2	cullin 2	protein coding gene	yes	ENST00000374751.7;ENST00000626172.2	5.923	4.025	3.845	0.906(8677)	0.954(670)	0.928(16126)	non tumor-specific	nAS	yes
PRR12_LS005	chr19:49599938|49601491:+	PRR12	proline rich 12	protein coding gene	no	ENST00000418929.6;ENST00000615927.1	29.813	14.867	14.632	0.977(9365)	0.99(695)	0.976(16960)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NACAD_LS0023	chr7:45084035|45084276:+	NACAD	NAC alpha domain containing	protein coding gene	no	.	3.799	4.057	0.000	0.011(103)	0.003(2)	0(0)	non tumor-specific	nAS	no
FAM49B_LS043	chr8:129904585|129912470:-	FAM49B	CYFIP related Rac1 interactor B	protein coding gene	no	ENST00000519142.5;ENST00000522702.5;ENST00000521223.5	0.039	0.032	0.952	0.492(4710)	0.54(379)	0.368(6403)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RAB5B_LS0017	chr12:55981015|55986869:+	RAB5B	RAB5B, member RAS oncogene family	protein coding gene	no	.	0.932	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
SLC12A5_LS022	chr20:46041540|46043153:+	SLC12A5	solute carrier family 12 member 5	protein coding gene	yes	ENST00000454036.6;ENST00000616933.4;ENST00000616201.4;ENST00000243964.6	3.082	20.001	6.475	0.041(392)	0.007(5)	0.226(3930)	non tumor-specific	nAS	yes
UN_CST3_LS0148	chr20:23637809|23637873:+	CST3	cystatin C	protein coding gene	no	.	5.177	3.032	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	nAS	no
SEZ6L_LS006	chr22:26306144|26310670:+	SEZ6L	seizure related 6 homolog like	protein coding gene	no	ENST00000404234.7;ENST00000529632.6;ENST00000360929.7;ENST00000629590.2;ENST00000248933.10;ENST00000343706.8;ENST00000403121.5;ENST00000402979.1	17.906	4.345	2.803	0.15(1437)	0.057(40)	0.312(5420)	non tumor-specific	nAS	yes
UN_AL121721.1_UP_LS0001	chr20:20360020|20360710:-	AL121721.1	-	lncRNA gene	no	.	2.488	0.398	0.000	0.007(63)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMARCA4_LS028	chr19:10996544|11003029:+	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein coding gene	yes	ENST00000344626.9;ENST00000643549.1;ENST00000646693.1;ENST00000642726.1;ENST00000646484.1;ENST00000644737.1;ENST00000642628.1;ENST00000643296.1;ENST00000647230.1;ENST00000646510.1;ENST00000429416.8;ENST00000645460.1;ENST00000541122.6;ENST00000589677.5;ENST00000444061.8;ENST00000590574.6;ENST00000413806.7;ENST00000450717.7;ENST00000591545.6;ENST00000643995.1;ENST00000644327.1;ENST00000644065.1;ENST00000644963.1;ENST00000643208.1;ENST00000642350.1;ENST00000645061.1;ENST00000644290.1;ENST00000647268.1;ENST00000644267.1;ENST00000643857.1;ENST00000646183.1;ENST00000646746.1;ENST00000643534.1	62.136	31.306	32.051	0.992(9508)	0.993(697)	0.979(17014)	non tumor-specific	nAS	yes
UN_DAB2IP_LS0027	chr9:121699458|121742785:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	.	0.649	0.497	0.000	0.028(269)	0.03(21)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_AC002091.2_UP_LS0023	chr17:8717039|8718411:+	AC002091.2	-	lncRNA gene	no	.	1.328	1.459	0.000	0.001(12)	0.023(16)	0(0)	non tumor-specific	nAS	no
UN_NCOA1_LS0042	chr2:24718039|24726589:+	NCOA1	nuclear receptor coactivator 1	protein coding gene	no	.	0.966	1.392	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
PPP6R2_LS023	chr22:50419462|50422254:+	PPP6R2	protein phosphatase 6 regulatory subunit 2	protein coding gene	no	ENST00000359139.7;ENST00000612753.4;ENST00000395741.7;ENST00000395744.7;ENST00000216061.9;ENST00000401672.7	60.845	42.986	56.631	0.992(9509)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
AC010333.1_LS001	chr16:12556539|12557319:-	AC010333.1	-	lncRNA gene	no	ENST00000563116.1	0.313	0.024	0.669	0.015(145)	0.028(20)	0.006(106)	non tumor-specific	nAS	yes
UN_AC093843.1_UP_LS0006	chr2:220753768|220774918:+	AC093843.1	-	lncRNA gene	no	.	1.584	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TKT_LS0059	chr3:53232813|53233156:-	TKT	transketolase	protein coding gene	no	.	1.873	1.066	0.000	0.009(88)	0.02(14)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
NSD1_LS016	chr5:177235945|177239756:+	NSD1	nuclear receptor binding SET domain protein 1	protein coding gene	yes	ENST00000375350.3	0.475	0.288	1.867	0.114(1090)	0.155(109)	0.808(14039)	non tumor-specific	alt_3prime;exon_skip	yes
MAN2B1_LS015	chr19:12656687|12656949:-	MAN2B1	mannosidase alpha class 2B member 1	protein coding gene	no	ENST00000456935.6;ENST00000221363.8;ENST00000466794.5;ENST00000595880.5;ENST00000433513.5;ENST00000593686.1;ENST00000495617.1	102.694	53.800	47.676	0.995(9535)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime	yes
UN_AC108099.1_UP_LS0004	chr5:41934308|42039916:+	AC108099.1	-	lncRNA gene	no	.	2.309	0.660	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
STAC_LS011	chr3:36485058|36486134:+	STAC	SH3 and cysteine rich domain	protein coding gene	no	ENST00000273183.7;ENST00000427486.5	2.100	2.304	2.084	0.335(3210)	0.632(444)	0.648(11262)	non tumor-specific	exon_skip	yes
TRIM8_LS010	chr10:102656137|102656270:+	TRIM8	tripartite motif containing 8	protein coding gene	yes	ENST00000643721.1;ENST00000302424.12;ENST00000462202.3;ENST00000645961.1;ENST00000479004.2;ENST00000646349.1;ENST00000487927.6;ENST00000644979.1;ENST00000644572.1;ENST00000646757.1;ENST00000643100.1;ENST00000642304.1	143.683	104.461	126.276	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_SEMA3G_UP_LS0003	chr3:52452513|52455287:-	SEMA3G	semaphorin 3G	protein coding gene	no	.	1.438	0.540	0.000	0.039(377)	0.067(47)	0(0)	non tumor-specific	nAS	no
UN_LINC01093_LS0008	chr4:184898769|184899307:-	LINC01093	long intergenic non-protein coding RNA 1093	lncRNA gene	no	.	1.682	1.769	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_PPP2R5C_LS0007	chr14:101762970|101856686:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	.	6.162	0.609	0.000	0.018(174)	0.028(20)	0(0)	non tumor-specific	exon_skip	no
PRAME_LS021	chr22:22557580|22558971:-	PRAME	PRAME nuclear receptor transcriptional regulator	protein coding gene	yes	ENST00000398741.5;ENST00000405655.7;ENST00000420709.5	3.915	0.109	0.767	0.419(4011)	0.121(85)	0.075(1298)	non tumor-specific	nAS	yes
CSGALNACT1_LS026	chr8:19601865|19682696:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000397998.7	0.061	0.046	0.958	0.152(1457)	0.218(153)	0.204(3547)	non tumor-specific	nAS	yes
UN_AF212831.1_UP_LS0010	chr21:16973524|17019692:-	AF212831.1	-	lncRNA gene	no	.	4.973	1.175	0.000	0.006(59)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_NRDE2_LS0011	chr14:90272549|90305795:+	NRDE2	NRDE-2, necessary for RNA interference, domain containing	protein coding gene	no	.	1.425	0.274	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	nAS	no
MELK_LS027	chr9:36633200|36642997:+	MELK	maternal embryonic leucine zipper kinase	protein coding gene	no	ENST00000298048.6;ENST00000543751.5;ENST00000536860.5;ENST00000541717.4;ENST00000536329.5;ENST00000627766.2;ENST00000536987.5;ENST00000545008.5;ENST00000625974.2;ENST00000626154.2	20.002	2.890	1.780	0.844(8084)	0.348(244)	0.49(8512)	non tumor-specific	exon_skip	yes
UN_SPECC1L-ADORA2A_LS0092	chr22:24432027|24432621:+	SPECC1L-ADORA2A	SPECC1L-ADORA2A readthrough (NMD candidate)	protein coding gene	no	.	0.809	0.139	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PTMS_LS0068	chr12:6767585|6769603:+	PTMS	parathymosin	protein coding gene	no	.	4.846	0.251	0.000	0.006(55)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
PCSK6_LS026	chr15:101370523|101382092:-	PCSK6	proprotein convertase subtilisin/kexin type 6	protein coding gene	no	ENST00000611716.4;ENST00000618548.4;ENST00000622483.4;ENST00000619160.4;ENST00000560902.5;ENST00000611967.4;ENST00000615296.4;ENST00000331826.11;ENST00000558154.1	15.097	15.932	7.687	0.854(8182)	0.969(680)	0.923(16050)	non tumor-specific	exon_skip	yes
AL024474.2_LS001	chr6:144312093|144333196:-	AL024474.2	-	lncRNA gene	no	ENST00000431309.1	1.698	0.001	0.944	0.011(101)	0.003(2)	0(1)	non tumor-specific	nAS	yes
TMPRSS11D_LS013	chr4:67838329|67854068:-	TMPRSS11D	transmembrane serine protease 11D	protein coding gene	no	ENST00000502573.5	0.244	0.135	1.232	0.067(640)	0.051(36)	0.028(492)	non tumor-specific	exon_skip	yes
AL355310.3_LS001	chr1:109540053|109543404:-	AL355310.3	-	lncRNA gene	no	ENST00000526411.1	0.010	0.000	0.832	0.015(139)	0.009(6)	0.001(9)	non tumor-specific	nAS	yes
UN_RINT1_LS0007	chr7:105536749|105542492:+	RINT1	RAD50 interactor 1	protein coding gene	yes	.	1.327	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;mutex_exons	no
FHOD1_LS024	chr16:67237569|67237657:-	FHOD1	formin homology 2 domain containing 1	protein coding gene	no	ENST00000258201.8;ENST00000567752.5;ENST00000561922.1	19.096	9.773	20.787	0.931(8924)	0.93(653)	0.972(16899)	non tumor-specific	exon_skip;intron_retention	yes
UN_PC_LS0045	chr11:66858217|66858304:+	PC	podocalyxin like	protein coding gene	no	.	5.395	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
FUT3_LS025	chr19:5847694|5848834:-	FUT3	fucosyltransferase 3 (Lewis blood group)	protein coding gene	no	ENST00000593144.1	0.218	0.140	0.640	0.011(108)	0.043(30)	0.004(67)	non tumor-specific	alt_3prime;exon_skip	yes
TRIM54_LS002	chr2:27298739|27299245:+	TRIM54	tripartite motif containing 54	protein coding gene	no	ENST00000380075.6;ENST00000296098.4	4.041	8.851	1.783	0.087(838)	0.17(119)	0.568(9867)	non tumor-specific	nAS	yes
TUBA3C_LS001	chr13:19173946|19174043:-	TUBA3C	tubulin alpha 3c	protein coding gene	no	ENST00000618094.1	41.223	0.000	0.644	0(1)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_MCUR1_LS0036	chr6:13801389|13806925:-	MCUR1	mitochondrial calcium uniporter regulator 1	protein coding gene	no	.	3.374	0.142	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
SHQ1_LS014	chr3:72844423|72846215:-	SHQ1	SHQ1, H/ACA ribonucleoprotein assembly factor	protein coding gene	yes	ENST00000463369.5	0.193	0.054	0.669	0.036(346)	0.04(28)	0.044(761)	non tumor-specific	nAS	yes
HIRA_LS024	chr22:19408593|19410716:-	HIRA	histone cell cycle regulator	protein coding gene	yes	ENST00000340170.8;ENST00000263208.5;ENST00000464189.5;ENST00000452818.1	18.983	14.512	12.260	0.945(9052)	0.986(692)	0.976(16971)	non tumor-specific	nAS	yes
UN_EPB41_LS0038	chr1:29068783|29096155:+	EPB41	erythrocyte membrane protein band 4.1	protein coding gene	yes	.	1.788	1.350	0.000	0.014(137)	0.078(55)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_LINC02544_UP_LS0001	chr6:169183577|169185171:-	LINC02544	long intergenic non-protein coding RNA 2544	lncRNA gene	no	.	10.907	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ADGRL3_LS015	chr4:61909745|61912719:+	ADGRL3	adhesion G protein-coupled receptor L3	protein coding gene	no	ENST00000512091.6;ENST00000514591.5;ENST00000509896.5;ENST00000511324.5;ENST00000506700.5;ENST00000507164.5;ENST00000508693.5;ENST00000507625.5;ENST00000514157.5;ENST00000504896.5;ENST00000508946.5;ENST00000506720.5;ENST00000506746.5;ENST00000514996.5	4.475	3.489	2.856	0.174(1667)	0.302(212)	0.65(11298)	non tumor-specific	exon_skip	yes
UN_RHD_LS0011	chr1:25304456|25305181:+	RHD	Rh blood group D antigen	protein coding gene	no	.	4.217	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SCN10A_LS004	chr3:38709615|38710844:-	SCN10A	sodium voltage-gated channel alpha subunit 10	protein coding gene	no	ENST00000449082.3;ENST00000643108.1;ENST00000644826.1;ENST00000643924.1	2.019	0.000	0.693	0(2)	0(0)	0.016(270)	non tumor-specific	nAS	yes
UN_TNPO1_LS0001	chr5:72848247|72848385:+	TNPO1	transportin 1	protein coding gene	no	.	5.608	0.305	0.000	0.02(190)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
ITIH4-AS1_LS001	chr3:52823993|52824112:+	ITIH4-AS1	ITIH4 antisense RNA 1	lncRNA gene	no	ENST00000478366.1	1.335	4.434	0.650	0.001(10)	0.006(4)	0.02(351)	non tumor-specific	nAS	yes
UN_ATP5F1B_LS0003	chr12:56638226|56638259:+	ATP5F1B	ATP synthase F1 subunit beta	protein coding gene	no	.	11.820	0.158	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
AP1B1_LS008	chr22:29331533|29331787:-	AP1B1	adaptor related protein complex 1 subunit beta 1	protein coding gene	no	ENST00000482818.1;ENST00000432560.6;ENST00000357586.6;ENST00000405198.5;ENST00000317368.11;ENST00000402502.5;ENST00000415447.5	217.260	136.154	101.364	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
PDLIM5_LS002	chr4:94455384|94455819:+	PDLIM5	PDZ and LIM domain 5	protein coding gene	no	ENST00000504489.3	0.043	0.102	1.368	0.629(6028)	0.801(562)	0.55(9565)	non tumor-specific	intron_retention	yes
GOLGA2_LS016	chr9:128261757|128262563:-	GOLGA2	golgin A2	protein coding gene	no	ENST00000421699.6;ENST00000611957.4;ENST00000609374.5;ENST00000450617.5;ENST00000490257.5;ENST00000468488.1	50.515	32.426	54.255	0.988(9463)	0.994(698)	0.979(17019)	non tumor-specific	exon_skip	yes
DLL1_LS007	chr6:170286298|170288239:-	DLL1	delta like canonical Notch ligand 1	protein coding gene	no	ENST00000366756.3	15.648	9.845	16.869	0.841(8054)	0.967(679)	0.949(16503)	non tumor-specific	nAS	yes
CCDC114_LS019	chr19:48318812|48319434:-	CCDC114	coiled-coil domain containing 114	protein coding gene	no	ENST00000315396.7	0.270	0.037	0.785	0.116(1112)	0.108(76)	0.137(2380)	non tumor-specific	exon_skip	yes
UN_SHC1_LS0018	chr1:154967770|154967980:-	SHC1	SHC adaptor protein 1	protein coding gene	no	.	50.385	7.078	0.000	0.004(37)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
CD55_LS025	chr1:207347256|207359546:+	CD55	CD55 molecule (Cromer blood group)	protein coding gene	no	.;.	9.854	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
PLCB4_LS024	chr20:9389958|9390531:+	PLCB4	phospholipase C beta 4	protein coding gene	no	ENST00000378473.7;ENST00000278655.8;ENST00000414679.6;ENST00000378493.5;ENST00000492632.5;ENST00000378501.2;ENST00000464199.5;ENST00000473151.5;ENST00000482123.1	10.509	6.451	8.545	0.621(5947)	0.832(584)	0.883(15343)	non tumor-specific	nAS	yes
UN_NRSN2_LS0006	chr20:347142|353210:+	NRSN2	neurensin 2	protein coding gene	yes	.	0.995	0.239	0.000	0.001(13)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ANKRD30A_LS0012	chr10:37147009|37147370:+	ANKRD30A	ankyrin repeat domain 30A	protein coding gene	no	.	0.943	0.287	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_C2orf27A_UP_LS0038	chr2:131686441|131688166:+	C2orf27A	chromosome 2 open reading frame 27A	pseudogene	no	.	13.183	5.028	0.000	0.772(7393)	0.684(480)	0(0)	non tumor-specific	nAS	no
TMEM260_LS013	chr14:56612285|56615944:+	TMEM260	transmembrane protein 260	protein coding gene	no	ENST00000556422.5;ENST00000261556.10;ENST00000555497.5;ENST00000557626.5;ENST00000539559.6;ENST00000538838.5;ENST00000556929.5;ENST00000555905.5;ENST00000553335.5	7.051	4.961	5.569	0.916(8776)	0.963(676)	0.957(16641)	non tumor-specific	alt_5prime	yes
UN_TRAPPC4_LS0010	chr11:119020329|119021760:+	TRAPPC4	trafficking protein particle complex 4	protein coding gene	no	.	4.736	0.696	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AC011586.2_LS0009	chr8:16662699|16676917:-	AC011586.2	-	lncRNA gene	no	.	1.795	0.229	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACSL3_LS007	chr2:222909150|222916319:+	ACSL3	acyl-CoA synthetase long chain family member 3	protein coding gene	no	ENST00000357430.7;ENST00000392066.7;ENST00000542810.1	46.083	37.237	22.049	0.974(9336)	0.991(696)	0.978(16999)	non tumor-specific	exon_skip	yes
TDRD9_LS036	chr14:104040334|104042069:+	TDRD9	tudor domain containing 9	protein coding gene	no	ENST00000409874.8;ENST00000339063.6	11.642	3.252	2.312	0.211(2026)	0.44(309)	0.73(12691)	non tumor-specific	exon_skip	yes
UN_AL160408.1_LS0026	chr1:234676918|234679143:-	AL160408.1	-	lncRNA gene	no	.	2.206	0.450	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PLEKHS1_LS0076	chr10:113781308|113781427:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	7.916	0.749	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	nAS	no
DNAJC18_LS012	chr5:139428683|139437372:-	DNAJC18	DnaJ heat shock protein family (Hsp40) member C18	protein coding gene	no	ENST00000302060.9;ENST00000507405.5;ENST00000515581.5;ENST00000515277.5	8.546	6.522	11.551	0.905(8672)	0.92(646)	0.963(16742)	non tumor-specific	exon_skip	yes
ZNF335_LS011	chr20:45952521|45952598:-	ZNF335	zinc finger protein 335	protein coding gene	no	ENST00000322927.2	31.632	13.972	33.617	0.989(9473)	0.994(698)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CEBPB_LS0074	chr20:50191773|50192078:-	CEBPB	CCAAT enhancer binding protein beta	protein coding gene	no	.	1.739	0.657	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
WDR46_LS017	chr6:33288235|33288358:-	WDR46	WD repeat domain 46	protein coding gene	no	ENST00000374617.8;ENST00000444176.1;ENST00000468157.5;ENST00000481025.1	88.531	40.781	47.246	0.995(9529)	0.997(700)	0.979(17020)	non tumor-specific	intron_retention	yes
UN_DGAT2L7P_LS0001	chr7:101202015|101202144:-	DGAT2L7P	diacylglycerol O-acyltransferase 2 like 7, pseudogene	pseudogene	no	.	2.941	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	nAS	no
RRAS_LS001	chr19:49635660|49635734:-	RRAS	RAS related	protein coding gene	yes	ENST00000246792.3	214.451	204.072	232.888	0.959(9184)	0.963(676)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NOD2_LS015	chr16:50712401|50719925:+	NOD2	nucleotide binding oligomerization domain containing 2	protein coding gene	no	ENST00000529633.5;ENST00000529633.5	0.234	0.070	0.688	0.103(984)	0.053(37)	0.061(1064)	non tumor-specific	alt_5prime;exon_skip	yes
PROCA1_LS008	chr17:28704843|28705833:-	PROCA1	protein interacting with cyclin A1	protein coding gene	no	ENST00000584073.5	0.197	0.091	0.757	0.136(1301)	0.064(45)	0.085(1476)	non tumor-specific	intron_retention	yes
MANCR_LS003	chr10:4651203|4657601:-	MANCR	mitotically associated long non coding RNA	lncRNA gene	no	ENST00000430998.6	2.034	0.593	0.764	0.115(1104)	0.077(54)	0.147(2563)	non tumor-specific	nAS	yes
SPTBN5_LS011	chr15:41853787|41854050:-	SPTBN5	spectrin beta, non-erythrocytic 5	protein coding gene	no	ENST00000320955.7	3.208	2.656	3.835	0.335(3207)	0.283(199)	0.877(15241)	non tumor-specific	exon_skip	yes
UN_MYH7B_LS0021	chr20:34993746|34994146:+	MYH7B	myosin heavy chain 7B	protein coding gene	no	.	4.466	0.139	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HGD_LS004	chr3:120633590|120638455:-	HGD	homogentisate 1,2-dioxygenase	protein coding gene	no	ENST00000494453.1	5.251	7.444	1.830	0.45(4310)	0.62(435)	0.277(4823)	non tumor-specific	exon_skip	yes
MAGED4_LS026	chrX:52191861|52192057:+	MAGED4	MAGE family member D4	protein coding gene	no	ENST00000599522.6;ENST00000471932.5;ENST00000459685.5;ENST00000498483.5;ENST00000497348.1	37.121	10.177	0.850	0.852(8163)	0.895(628)	0.134(2334)	non tumor-specific	alt_5prime	yes
UN_RAB27A_LS0063	chr15:55303185|55303715:-	RAB27A	RAB27A, member RAS oncogene family	protein coding gene	no	.	1.416	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
PHKB_LS025	chr16:47589102|47590305:+	PHKB	phosphorylase kinase regulatory subunit beta	protein coding gene	no	ENST00000567402.5	0.332	0.190	1.064	0.305(2923)	0.346(243)	0.542(9420)	non tumor-specific	exon_skip	yes
UN_MACROD1_UP_LS0010	chr11:64171989|64172166:-	MACROD1	mono-ADP ribosylhydrolase 1	protein coding gene	yes	.	1.662	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NEUROG3_LS0001	chr10:69573110|69573210:-	NEUROG3	neurogenin 3	protein coding gene	no	.	4.813	0.430	0.000	0.008(75)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_MUC1_LS0036	chr1:155187312|155188387:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	2.861	2.071	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
PWRN1_LS018	chr15:24568563|24569783:+	PWRN1	Prader-Willi region non-protein coding RNA 1	lncRNA gene	no	ENST00000568045.5	2.006	0.341	0.992	0.001(6)	0.001(1)	0.061(1061)	non tumor-specific	nAS	yes
UN_MSTO2P_LS0017	chr1:155747896|155748400:+	MSTO2P	misato family member 2, pseudogene	pseudogene	no	.	3.569	1.661	0.000	0.24(2300)	0.279(196)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
TRIP10_LS020	chr19:6744994|6746452:+	TRIP10	thyroid hormone receptor interactor 10	protein coding gene	no	ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5;ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5;ENST00000600428.5;ENST00000313285.12;ENST00000595305.5;ENST00000596758.5	58.798	25.670	60.100	0.985(9437)	0.989(694)	0.977(16989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_ATN1_LS0044	chr12:6935751|6936492:-	ATN1	atrophin 1	protein coding gene	no	.	1.800	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FANCI_LS0062	chr15:89307529|89312904:+	FANCI	symbol withdrawn, see [HGNC:25568](/data/gene-symbol-report/#!/hgnc_id/HGNC:25568)	protein coding gene	no	.	8.611	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
GTF2H3_LS005	chr12:123639343|123645455:+	GTF2H3	general transcription factor IIH subunit 3	protein coding gene	no	ENST00000618160.4;ENST00000542279.5;ENST00000537368.5;ENST00000539994.5;ENST00000543341.6;ENST00000537695.5;ENST00000536375.5;ENST00000543415.5;ENST00000538533.5	13.096	7.727	10.845	0.97(9292)	0.989(694)	0.966(16790)	non tumor-specific	exon_skip	yes
INTS9_LS022	chr8:28837776|28859436:-	INTS9	integrator complex subunit 9	protein coding gene	no	ENST00000520437.1	0.413	0.209	0.595	0.244(2341)	0.265(186)	0.01(168)	non tumor-specific	exon_skip	yes
TMEM26_LS011	chr10:61431332|61436170:-	TMEM26	transmembrane protein 26	protein coding gene	no	ENST00000503886.5;ENST00000399298.7;ENST00000488505.2	2.477	1.486	1.088	0.325(3114)	0.481(338)	0.322(5591)	non tumor-specific	alt_5prime	yes
USP9Y_LS017	chrY:12771155|12773583:+	USP9Y	ubiquitin specific peptidase 9 Y-linked	protein coding gene	no	ENST00000338981.7;ENST00000426564.6	4.609	3.367	4.577	0.239(2286)	0.386(271)	0.582(10114)	non tumor-specific	nAS	yes
ALDH1A2_LS025	chr15:58014281|58138447:-	ALDH1A2	aldehyde dehydrogenase 1 family member A2	protein coding gene	yes	ENST00000557967.5	0.086	0.063	0.906	0.095(907)	0.261(183)	0.076(1314)	non tumor-specific	exon_skip	yes
UN_SHC3_UP_LS0013	chr9:89265095|89288487:-	SHC3	SHC adaptor protein 3	protein coding gene	no	.	1.042	0.245	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYO1E_LS022	chr15:59214720|59217891:-	MYO1E	myosin IE	protein coding gene	no	ENST00000288235.8;ENST00000559489.1	36.958	28.073	13.792	0.938(8990)	0.986(692)	0.949(16490)	non tumor-specific	exon_skip	yes
SIAE_LS011	chr11:124669521|124675258:-	SIAE	sialic acid acetylesterase	protein coding gene	no	ENST00000545756.5;ENST00000618733.4;ENST00000525730.1	0.603	0.453	0.781	0.178(1702)	0.303(213)	0.197(3427)	non tumor-specific	nAS	yes
UN_FBN3_LS0047	chr19:8149083|8149449:-	FBN3	fibrillin 3	protein coding gene	no	.	1.498	0.042	0.000	0.015(140)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LBR_LS007	chr1:225411440|225412454:-	LBR	lamin B receptor	protein coding gene	no	ENST00000272163.8;ENST00000338179.6	48.880	26.091	18.036	0.939(8996)	0.983(690)	0.976(16968)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ZNF662_LS004	chr3:42908148|42908796:+	ZNF662	zinc finger protein 662	protein coding gene	no	ENST00000328199.6	0.797	0.789	2.315	0.378(3625)	0.617(433)	0.827(14371)	non tumor-specific	alt_3prime;intron_retention	yes
STAMBP_LS022	chr2:73860151|73862203:+	STAMBP	STAM binding protein	protein coding gene	no	ENST00000339566.7;ENST00000409707.5;ENST00000394073.5;ENST00000394070.6;ENST00000487811.1	35.676	19.394	49.278	0.995(9529)	0.993(697)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_GPX3_LS0078	chr5:151028474|151028586:-	GPX3	glutathione peroxidase 3	protein coding gene	yes	.	24.717	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FRMPD3_LS0005	chrX:107546276|107547081:+	FRMPD3	FERM and PDZ domain containing 3	protein coding gene	no	.	2.112	0.298	0.000	0.04(380)	0.027(19)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_RPL23AP33_UP_LS0002	chr2:185311840|185316340:-	RPL23AP33	ribosomal protein L23a pseudogene 33	pseudogene	no	.	7.128	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
DAZ3_LS008	chrY:24786585|24788894:-	DAZ3	deleted in azoospermia 3	protein coding gene	no	ENST00000382365.6	20.263	0.922	0.709	0.007(66)	0.004(3)	0.005(94)	non tumor-specific	exon_skip	yes
UN_ZDHHC2_LS0013	chr8:17210058|17210393:+	ZDHHC2	zinc finger DHHC-type palmitoyltransferase 2	protein coding gene	yes	.	37.573	26.737	0.000	0.007(66)	0.014(10)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AC025575.2_LS001	chr12:71047679|71115850:-	AC025575.2	-	lncRNA gene	no	ENST00000549357.1	2.980	0.364	0.656	0.189(1807)	0.041(29)	0.025(436)	non tumor-specific	nAS	yes
CRB3_LS002	chr19:6464350|6464608:+	CRB3	crumbs cell polarity complex component 3	protein coding gene	no	ENST00000600229.5;ENST00000356762.7	22.479	14.885	4.783	0.715(6848)	0.862(605)	0.647(11248)	non tumor-specific	exon_skip	yes
SMG8_LS004	chr17:59212030|59212341:+	SMG8	SMG8 nonsense mediated mRNA decay factor	protein coding gene	no	ENST00000580798.1	0.140	0.157	0.705	0.325(3115)	0.293(206)	0.192(3329)	non tumor-specific	alt_5prime	yes
UN_COL17A1_LS0040	chr10:104039519|104039973:-	COL17A1	collagen type XVII alpha 1 chain	protein coding gene	no	.	3.747	2.363	0.000	0.013(124)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
KIF1BP_LS012	chr10:69006929|69008841:+	KIF1BP	kinesin family binding protein	protein coding gene	no	ENST00000637738.1;ENST00000637420.1	0.170	0.048	1.058	0.032(310)	0.016(11)	0.073(1264)	non tumor-specific	exon_skip;mutex_exons	yes
TEDC2_LS012	chr16:2461800|2462149:+	TEDC2	tubulin epsilon and delta complex 2	protein coding gene	no	ENST00000361837.8;ENST00000569496.5;ENST00000567489.5;ENST00000569994.5;ENST00000563531.5;ENST00000569664.5;ENST00000483320.5;ENST00000568753.1;ENST00000565716.1;ENST00000566580.1	8.850	0.940	2.100	0.97(9293)	0.772(542)	0.758(13182)	non tumor-specific	exon_skip	yes
PAX8_LS023	chr2:113227256|113235394:-	PAX8	paired box 8	protein coding gene	yes	ENST00000348715.9;ENST00000263334.9;ENST00000429538.7;ENST00000465084.1;ENST00000497038.6;ENST00000485840.1;ENST00000348715.9;ENST00000263334.9;ENST00000429538.7;ENST00000465084.1;ENST00000497038.6;ENST00000485840.1	52.651	56.099	2.495	0.705(6759)	0.758(532)	0.776(13482)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PLEC_LS031	chr8:143934730|143934810:-	PLEC	plectin	protein coding gene	no	ENST00000345136.7;ENST00000357649.6;ENST00000354589.7;ENST00000398774.6;ENST00000322810.8;ENST00000354958.6;ENST00000356346.7;ENST00000436759.6;ENST00000527303.2;ENST00000527096.5;ENST00000528025.5	53.186	37.315	25.919	0.943(9039)	0.964(677)	0.975(16950)	non tumor-specific	alt_3prime	yes
UN_METAP1_LS0008	chr4:99034355|99035400:+	METAP1	methionyl aminopeptidase 1	protein coding gene	no	.	4.041	0.873	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
UN_VN1R38P_UP_LS0005	chr7:64294719|64295594:-	VN1R38P	vomeronasal 1 receptor 38 pseudogene	pseudogene	no	.	3.827	0.176	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS1543	chr14:105771300|105839276:+	AC246787.2	-	lncRNA gene	no	.	1.140	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNBP_UP_LS0002	chr3:129200575|129277602:-	CNBP	CCHC-type zinc finger nucleic acid binding protein	protein coding gene	no	.	3.090	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MRPL28_LS010	chr16:370225|370310:-	MRPL28	mitochondrial ribosomal protein L28	protein coding gene	no	ENST00000450882.1	0.024	0.011	0.723	0.624(5983)	0.554(389)	0.002(41)	non tumor-specific	alt_5prime	yes
UN_AC139530.2_LS0043	chr17:81720148|81720186:-	AC139530.2	-	protein coding gene	no	.	2.109	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF766_LS011	chr19:52283413|52288042:+	ZNF766	zinc finger protein 766	protein coding gene	no	ENST00000599581.5;ENST00000600821.5	0.875	0.765	0.758	0.322(3084)	0.463(325)	0.312(5417)	non tumor-specific	exon_skip	yes
UBE2B_LS007	chr5:134376694|134380719:+	UBE2B	ubiquitin conjugating enzyme E2 B	protein coding gene	no	ENST00000265339.6;ENST00000506787.5;ENST00000507277.1	106.789	82.229	116.733	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_PRLR_LS0021	chr5:35137931|35195551:-	PRLR	prolactin receptor	protein coding gene	no	.	2.036	1.677	0.000	0.004(41)	0.071(50)	0(0)	non tumor-specific	exon_skip	no
KIF5B_LS008	chr10:32018387|32018502:-	KIF5B	kinesin family member 5B	protein coding gene	no	ENST00000302418.4	124.179	93.509	88.574	0.995(9530)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip;intron_retention	yes
IRF1_LS019	chr5:132488052|132489392:-	IRF1	interferon regulatory factor 1	protein coding gene	yes	ENST00000459982.5	0.559	0.492	0.656	0.049(469)	0.075(53)	0.023(394)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC096719.1_LS0012	chr4:22012069|22077325:-	AC096719.1	-	lncRNA gene	no	.	1.626	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
PSMB8_LS001	chr6:32841047|32841531:-	PSMB8	proteasome 20S subunit beta 8	protein coding gene	no	ENST00000490613.1;ENST00000395339.7;ENST00000374882.7;ENST00000374881.2;ENST00000650411.1;ENST00000484003.1	398.737	152.497	135.198	0.964(9234)	0.974(684)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SCNM1_LS0024	chr1:151167414|151168125:+	SCNM1	sodium channel modifier 1	protein coding gene	no	.	12.947	0.413	0.000	0.006(55)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC01977_UP_LS0005	chr17:79813271|79814455:+	LINC01977	long intergenic non-protein coding RNA 1977	lncRNA gene	no	.	1.329	0.193	0.000	0.011(107)	0.001(1)	0(0)	non tumor-specific	nAS	no
GRIK1-AS1_LS003	chr21:29749145|29763578:+	GRIK1-AS1	GRIK1 antisense RNA 1	lncRNA gene	no	ENST00000423221.5	0.465	0.381	0.913	0.133(1270)	0.225(158)	0.162(2818)	non tumor-specific	nAS	yes
NBPF20_LS047	chr1:145378986|145379617:-	NBPF20	NBPF member 20	protein coding gene	no	ENST00000369373.9;ENST00000392971.6	0.243	0.170	0.000	0.001(7)	0.001(1)	0(0)	non tumor-specific	nAS	yes
HUWE1_LS093	chrX:53680186|53680559:-	HUWE1	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1	protein coding gene	no	ENST00000446750.1	0.164	0.086	0.677	0.244(2340)	0.402(282)	0.124(2151)	non tumor-specific	exon_skip;mutex_exons	yes
CFAP299_LS002	chr4:80362884|80420214:+	CFAP299	cilia and flagella associated protein 299	protein coding gene	no	ENST00000514249.5	0.352	0.183	0.802	0.004(37)	0.016(11)	0.084(1458)	non tumor-specific	exon_skip	yes
CYP1B1-AS1_LS033	chr2:38131614|38180289:+	CYP1B1-AS1	CYP1B1 antisense RNA 1	lncRNA gene	no	ENST00000628135.3;ENST00000413828.3	1.698	0.691	1.051	0.043(415)	0.08(56)	0.431(7488)	non tumor-specific	nAS	yes
UN_RF00108_UP_LS0008	chr13:40057154|40060198:-	RF00108	-	small non-coding RNA gene	no	.	2.203	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
RBM45_LS009	chr2:178123651|178123828:+	RBM45	RNA binding motif protein 45	protein coding gene	no	ENST00000616198.4;ENST00000286070.9;ENST00000493048.1;ENST00000616198.4;ENST00000286070.9;ENST00000493048.1	20.263	10.372	11.769	0.99(9489)	0.996(699)	0.976(16967)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
PPM1A_LS007	chr14:60250481|60267215:+	PPM1A	protein phosphatase, Mg2+/Mn2+ dependent 1A	protein coding gene	yes	ENST00000525399.2	0.319	0.114	0.609	0.042(407)	0.044(31)	0.021(360)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
EGFLAM-AS4_LS002	chr5:38286361|38290600:-	EGFLAM-AS4	EGFLAM antisense RNA 4	lncRNA gene	no	ENST00000512496.1	5.658	0.000	0.688	0.001(6)	0(0)	0.021(370)	non tumor-specific	nAS	yes
LGALSL_LS001	chr2:64454025|64454371:+	LGALSL	galectin like	protein coding gene	no	ENST00000464281.5	0.466	0.341	0.675	0.007(65)	0.014(10)	0.014(239)	non tumor-specific	nAS	yes
SAMD4A_LS002	chr14:54568112|54702062:+	SAMD4A	sterile alpha motif domain containing 4A	protein coding gene	no	ENST00000554335.5;ENST00000251091.9;ENST00000631086.2;ENST00000392067.7;ENST00000555112.1	5.835	4.550	11.461	0.851(8154)	0.937(658)	0.936(16266)	non tumor-specific	exon_skip	yes
KCNJ11_LS003	chr11:17387846|17388841:-	KCNJ11	potassium inwardly rectifying channel subfamily J member 11	protein coding gene	no	.;.	0.589	0.023	0.000	0.008(80)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_VEGFB_LS0027	chr11:64236327|64237420:+	VEGFB	vascular endothelial growth factor B	protein coding gene	no	.	48.713	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_LINC02469_LS0001	chr4:79663848|79666930:+	LINC02469	long intergenic non-protein coding RNA 2469	lncRNA gene	no	.	4.176	4.529	0.000	0.017(164)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_CTSF_LS0011	chr11:66564007|66564096:-	CTSF	cathepsin F	protein coding gene	no	.	20.390	8.663	0.000	0.01(95)	0.037(26)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_TAP2_LS0036	chr6:32838237|32838645:-	TAP2	transporter 2, ATP binding cassette subfamily B member	protein coding gene	no	.	5.977	0.393	0.000	0.008(76)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_AL669831.3_LS0280	chr1:630464|634140:-	AL669831.3	-	pseudogene	no	.	403.358	2.488	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
FAM86MP_LS002	chr4:9698483|9699345:+	FAM86MP	family with sequence similarity 86 member M, pseudogene	pseudogene	no	ENST00000340703.5	0.629	0.055	0.611	0.003(27)	0.003(2)	0.015(256)	non tumor-specific	nAS	yes
UN_RIPK1_LS0069	chr6:3114394|3114528:-	RIPK1	receptor interacting serine/threonine kinase 1	protein coding gene	no	.	1.493	0.059	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CEACAM6_LS0061	chr19:41771613|41771811:-	CEACAM6	CEA cell adhesion molecule 6	protein coding gene	yes	.	2.742	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0283	chr21:8215615|8259610:+	FP236383.1	-	lncRNA gene	no	.	132.839	43.225	0.000	0.002(23)	0.009(6)	0(0)	non tumor-specific	nAS	no
TTC39C_LS013	chr18:24114370|24114554:+	TTC39C	tetratricopeptide repeat domain 39C	protein coding gene	no	ENST00000581394.1	0.080	0.027	0.719	0.181(1737)	0.148(104)	0.048(828)	non tumor-specific	alt_5prime;intron_retention	yes
FAM230C_LS006	chr13:18229608|18230074:+	FAM230C	family with sequence similarity 230 member C	lncRNA gene	no	ENST00000623511.1	4.720	0.356	0.953	0.055(526)	0.006(4)	0.016(277)	non tumor-specific	nAS	yes
UN_IGFL2-AS1_LS0025	chr19:46198252|46201468:+	IGFL2-AS1	IGFL2 antisense RNA 1	lncRNA gene	no	.	0.891	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
CTNNA3_LS001	chr10:65920617|65966612:-	CTNNA3	catenin alpha 3	protein coding gene	yes	ENST00000433211.6;ENST00000373735.1	2.500	1.930	2.019	0.071(678)	0.083(58)	0.459(7977)	non tumor-specific	nAS	yes
PLXNB2_LS071	chr22:50294778|50304820:-	PLXNB2	plexin B2	protein coding gene	no	.;.	1.561	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_VASH1_LS0025	chr14:76781053|76781400:-	VASH1	vasohibin 1	protein coding gene	no	.	0.421	0.012	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
POC1A_LS007	chr3:52145961|52146988:-	POC1A	POC1 centriolar protein A	protein coding gene	no	ENST00000296484.6;ENST00000394970.6;ENST00000474012.1	21.851	5.014	3.092	0.972(9315)	0.947(665)	0.911(15837)	non tumor-specific	alt_3prime;exon_skip	yes
TCTA_LS004	chr3:49412802|49412933:+	TCTA	T cell leukemia translocation altered	protein coding gene	no	ENST00000497786.1	0.120	0.056	0.758	0.324(3102)	0.272(191)	0.286(4978)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
LYST_LS054	chr1:235800386|235800871:-	LYST	lysosomal trafficking regulator	protein coding gene	no	ENST00000389793.6;ENST00000389794.7;ENST00000489585.5;ENST00000465349.5	4.222	1.511	4.073	0.502(4813)	0.664(466)	0.895(15549)	non tumor-specific	nAS	yes
UN_CALR_LS0043	chr19:12940452|12940592:+	CALR	calreticulin	protein coding gene	no	.	406.296	41.767	0.000	0.014(134)	0.01(7)	0(0)	non tumor-specific	alt_3prime	no
RASA3_LS012	chr13:114013248|114015209:-	RASA3	RAS p21 protein activator 3	protein coding gene	no	ENST00000334062.7	24.241	13.681	26.717	0.914(8760)	0.981(689)	0.978(17002)	non tumor-specific	alt_5prime	yes
UN_IGHA1_LS0166	chr14:105708162|105708359:-	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	493.308	218.959	0.000	0.022(214)	0.036(25)	0(0)	non tumor-specific	nAS	no
VAV2_LS004	chr9:133769503|133770378:-	VAV2	vav guanine nucleotide exchange factor 2	protein coding gene	yes	ENST00000371850.7;ENST00000371851.1	0.658	0.948	1.491	0.247(2363)	0.218(153)	0.295(5129)	non tumor-specific	alt_3prime;exon_skip	yes
JAZF1_LS004	chr7:27846547|27895220:-	JAZF1	JAZF zinc finger 1	protein coding gene	no	ENST00000420835.4	0.936	0.186	0.796	0.007(64)	0.007(5)	0.298(5179)	non tumor-specific	exon_skip	yes
LPIN2_LS007	chr18:2925368|2926723:-	LPIN2	lipin 2	protein coding gene	no	ENST00000261596.8	26.879	29.540	9.711	0.909(8706)	0.983(690)	0.965(16766)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LRPAP1_LS0037	chr4:3514865|3516125:-	LRPAP1	LDL receptor related protein associated protein 1	protein coding gene	no	.	44.587	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
EOMES_LS002	chr3:27717808|27718587:-	EOMES	eomesodermin	protein coding gene	no	ENST00000449599.3;ENST00000461503.2	3.889	1.334	1.493	0.4(3829)	0.37(260)	0.439(7632)	non tumor-specific	alt_3prime	yes
CLUH_LS007	chr17:2692482|2692571:-	CLUH	clustered mitochondria homolog	protein coding gene	no	ENST00000435359.5;ENST00000570628.6;ENST00000575014.5;ENST00000574210.5;ENST00000574426.6;ENST00000572014.1	100.560	67.461	66.760	0.996(9543)	0.997(700)	0.979(17017)	non tumor-specific	exon_skip	yes
CFTR_LS032	chr7:117610669|117611581:+	CFTR	CF transmembrane conductance regulator	protein coding gene	yes	ENST00000003084.10;ENST00000649406.1;ENST00000648260.1;ENST00000426809.5;ENST00000649781.1;ENST00000647720.1	51.350	40.963	2.051	0.221(2116)	0.437(307)	0.288(5004)	non tumor-specific	alt_3prime;exon_skip	yes
UN_UVRAG_LS0016	chr11:75888903|75892129:+	UVRAG	UV radiation resistance associated	protein coding gene	yes	.	3.414	0.099	0.000	0.005(47)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
HLA-F_LS013	chr6:29725306|29725452:+	HLA-F	major histocompatibility complex, class I, F	protein coding gene	no	ENST00000606273.3	1.729	3.413	5.126	0.883(8463)	0.902(633)	0.927(16118)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JRK_LS0013	chr8:142666520|142668216:-	JRK	Jrk helix-turn-helix protein	protein coding gene	no	.	1.028	0.367	0.000	0.01(98)	0.013(9)	0(0)	non tumor-specific	nAS	no
SHISA6_LS007	chr17:11379509|11555740:+	SHISA6	shisa family member 6	protein coding gene	no	ENST00000432116.7	1.705	1.061	1.529	0.17(1631)	0.336(236)	0.332(5773)	non tumor-specific	exon_skip	yes
SH3D21_LS019	chr1:36319164|36319260:+	SH3D21	SH3 domain containing 21	protein coding gene	no	ENST00000453908.7;ENST00000505871.6	8.723	3.745	6.017	0.803(7695)	0.791(555)	0.94(16335)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TGFB1I1_LS010	chr16:31473556|31473682:+	TGFB1I1	transforming growth factor beta 1 induced transcript 1	protein coding gene	no	ENST00000565454.5;ENST00000394863.7;ENST00000563712.6;ENST00000561785.5;ENST00000562165.5;ENST00000564176.5;ENST00000569703.5;ENST00000361773.7;ENST00000562566.5;ENST00000394858.6;ENST00000567607.5;ENST00000568142.2;ENST00000564804.1	26.616	42.733	50.941	0.981(9402)	0.994(698)	0.973(16915)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MEN1_LS015	chr11:64807680|64807996:-	MEN1	menin 1	protein coding gene	yes	ENST00000377321.5	0.396	0.263	0.881	0.182(1741)	0.214(150)	0.388(6750)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	yes
UN_AC083864.2_UP_LS0020	chr7:35903157|35972468:+	AC083864.2	-	lncRNA gene	no	.	31.305	1.693	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LINC02315_UP_LS0027	chr14:40855054|40865082:+	LINC02315	long intergenic non-protein coding RNA 2315	lncRNA gene	no	.	2.773	0.000	0.000	0.011(110)	0(0)	0(0)	non tumor-specific	nAS	no
NVL_LS032	chr1:224308263|224311800:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000391875.6;ENST00000281701.10;ENST00000482491.5;ENST00000467882.5;ENST00000461466.5;ENST00000498767.1;ENST00000461546.2	10.354	5.292	11.979	0.978(9373)	0.981(689)	0.974(16933)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_SEPT9_LS0165	chr17:77499312|77499398:-	SEPT9	septin 9	protein coding gene	yes	.	2.052	0.063	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	nAS	no
VPS28_LS008	chr8:144425000|144425661:-	VPS28	VPS28 subunit of ESCRT-I	protein coding gene	no	.;.	21.999	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_RNA5SP389_UP_LS0504	chr14:106675137|106728283:+	RNA5SP389	RNA, 5S ribosomal pseudogene 389	no	no	.	35.710	11.649	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	nAS	no
RAPH1_LS019	chr2:203490089|203491214:-	RAPH1	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein coding gene	no	ENST00000457812.5;ENST00000319170.9;ENST00000374493.7;ENST00000630330.2;ENST00000308091.8;ENST00000439222.5;ENST00000419464.5;ENST00000423104.5;ENST00000453034.5;ENST00000418114.5;ENST00000428637.5	6.873	7.365	8.387	0.821(7865)	0.944(663)	0.932(16203)	non tumor-specific	alt_3prime	yes
ALG13_LS034	chrX:111713297|111721603:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000470971.5	0.012	0.000	0.599	0.013(121)	0.019(13)	0.007(128)	non tumor-specific	nAS	yes
QARS_LS027	chr3:49099431|49099510:-	QARS	glutaminyl-tRNA synthetase 1	protein coding gene	no	ENST00000453392.5;ENST00000637281.1;ENST00000306125.11;ENST00000636669.1;ENST00000430182.5;ENST00000414533.5;ENST00000464962.6;ENST00000637113.1;ENST00000459870.6;ENST00000636018.1;ENST00000637543.1;ENST00000634432.1;ENST00000482468.6	282.667	156.729	149.341	0.998(9565)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TMCC1_LS022	chr3:129857405|129867010:-	TMCC1	transmembrane and coiled-coil domain family 1	protein coding gene	no	ENST00000503256.5	0.806	0.043	0.623	0.01(98)	0.009(6)	0.033(582)	non tumor-specific	exon_skip	yes
NBEA_LS052	chr13:35628248|35645869:+	NBEA	neurobeachin	protein coding gene	no	ENST00000379922.3	0.643	1.890	2.029	0.118(1134)	0.423(297)	0.439(7638)	non tumor-specific	exon_skip	yes
SSPO_LS087	chr7:149820781|149820876:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000623373.3;ENST00000378016.4	2.633	0.547	1.690	0.06(574)	0.016(11)	0.609(10589)	non tumor-specific	nAS	yes
NSL1_LS007	chr1:212782426|212784363:-	NSL1	NSL1 component of MIS12 kinetochore complex	protein coding gene	no	ENST00000366978.5;ENST00000366977.7;ENST00000366976.3;ENST00000626725.1;ENST00000473995.5	54.344	26.765	27.929	0.993(9517)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
MAPK8IP1_LS003	chr11:45898190|45900138:+	MAPK8IP1	mitogen-activated protein kinase 8 interacting protein 1	protein coding gene	no	ENST00000241014.6;ENST00000395629.2	4.379	4.297	1.994	0.369(3535)	0.41(288)	0.572(9935)	non tumor-specific	exon_skip	yes
UN_PYGO2_LS0149	chr1:154963555|154963764:+	PYGO2	pygopus family PHD finger 2	protein coding gene	no	.	5.503	0.319	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMBIM6_LS009	chr12:49741611|49744413:+	TMBIM6	transmembrane BAX inhibitor motif containing 6	protein coding gene	no	ENST00000547832.5	0.016	0.042	0.676	0.094(904)	0.094(66)	0.101(1750)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_MGAT5B_LS0017	chr17:76940848|76944103:+	MGAT5B	alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B	protein coding gene	no	.	2.353	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZSCAN21_LS005	chr7:100051610|100056971:+	ZSCAN21	zinc finger and SCAN domain containing 21	protein coding gene	no	.;.	1.334	0.193	0.000	0.001(8)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WDYHV1_LS0024	chr8:123459963|123467079:+	WDYHV1	N-terminal glutamine amidase 1	protein coding gene	no	.	2.092	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TSPAN9_LS0115	chr12:3283255|3283341:-	TSPAN9	tetraspanin 9	protein coding gene	no	.	1.961	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
TTN_LS201	chr2:178663710|178663819:-	TTN	titin	protein coding gene	no	ENST00000589042.5;ENST00000425332.2	8.566	0.733	1.090	0.004(41)	0.01(7)	0.135(2340)	non tumor-specific	nAS	yes
RELT_LS002	chr11:73376499|73389112:+	RELT	RELT TNF receptor	protein coding gene	no	ENST00000064780.6;ENST00000544075.5	1.021	0.418	3.332	0.817(7832)	0.62(435)	0.888(15427)	non tumor-specific	exon_skip	yes
CDC20B_LS002	chr5:55114318|55119813:-	CDC20B	cell division cycle 20B	protein coding gene	no	ENST00000296733.5	2.419	0.894	0.759	0.066(637)	0.043(30)	0.015(261)	non tumor-specific	alt_5prime	yes
UN_FCGBP_LS0113	chr19:39877033|39877073:+	FCGBP	Fc fragment of IgG binding protein	protein coding gene	no	.	10.610	10.607	0.000	0.002(17)	0.007(5)	0(0)	non tumor-specific	nAS	no
C6_LS021	chr5:41199912|41201558:-	C6	proteasome 20S subunit alpha 7	protein coding gene	no	ENST00000337836.9;ENST00000263413.7;ENST00000417809.1	7.059	21.959	1.659	0.166(1589)	0.405(284)	0.353(6132)	non tumor-specific	exon_skip	yes
AC009509.1_LS005	chr12:27703620|27710599:-	AC009509.1	-	lncRNA gene	no	ENST00000542660.1	0.473	0.091	0.703	0.003(25)	0.003(2)	0.023(405)	non tumor-specific	nAS	yes
COL12A1_LS040	chr6:75128425|75130091:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6	20.005	10.653	16.290	0.788(7552)	0.897(630)	0.862(14989)	non tumor-specific	nAS	yes
UN_MROH1_LS0072	chr8:144233579|144238756:+	MROH1	maestro heat like repeat family member 1	protein coding gene	no	.	2.352	1.748	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC091730.1_LS001	chr7:49230334|49253188:+	AC091730.1	-	lncRNA gene	no	ENST00000440455.1	0.007	0.000	0.714	0(1)	0(0)	0(3)	non tumor-specific	nAS	yes
LINC02160_LS002	chr5:33245056|33248542:+	LINC02160	long intergenic non-protein coding RNA 2160	lncRNA gene	no	ENST00000503577.1	1.419	0.302	0.799	0.007(71)	0.028(20)	0.034(596)	non tumor-specific	nAS	yes
FMNL2_LS011	chr2:152611605|152614851:+	FMNL2	formin like 2	protein coding gene	no	ENST00000288670.13	23.206	15.144	24.587	0.892(8543)	0.926(650)	0.949(16495)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC069540.2_UP_LS0011	chr10:83893578|83895437:-	AC069540.2	-	lncRNA gene	no	.	2.761	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CREB3L3_LS0019	chr19:4172250|4172349:-	CREB3L3	cAMP responsive element binding protein 3 like 3	protein coding gene	no	.	5.596	27.599	0.000	0.009(83)	0.02(14)	0(0)	non tumor-specific	nAS	no
SLC5A12_LS019	chr11:26712706|26721709:-	SLC5A12	solute carrier family 5 member 12	protein coding gene	no	.;.	2.466	6.610	0.000	0.005(45)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MYCBP2_LS026	chr13:77093332|77095358:-	MYCBP2	MYC binding protein 2	protein coding gene	no	ENST00000544440.6;ENST00000357337.10	22.920	19.064	22.542	0.849(8135)	0.949(666)	0.972(16899)	non tumor-specific	alt_3prime;alt_5prime	yes
PDS5B_LS033	chr13:32770560|32770654:+	PDS5B	PDS5 cohesin associated factor B	protein coding gene	yes	ENST00000315596.14;ENST00000450460.5;ENST00000474274.1	37.949	24.152	22.615	0.988(9464)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
ZNF33A_LS004	chr10:38010783|38016871:+	ZNF33A	zinc finger protein 33A	protein coding gene	no	ENST00000628825.2;ENST00000628825.2	0.140	0.110	0.896	0.347(3323)	0.368(258)	0.389(6759)	non tumor-specific	alt_3prime;exon_skip	yes
ONECUT2_LS001	chr18:57436944|57476437:+	ONECUT2	one cut homeobox 2	protein coding gene	no	ENST00000491143.2	0.931	1.078	1.002	0.247(2365)	0.141(99)	0.081(1406)	non tumor-specific	exon_skip	yes
UN_IDH2_LS0045	chr15:90089687|90090479:-	IDH2	isocitrate dehydrogenase (NADP(+)) 2	protein coding gene	no	.	3.070	0.880	0.000	0.012(115)	0.017(12)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TDRD5_LS006	chr1:179595818|179618599:+	TDRD5	tudor domain containing 5	protein coding gene	no	ENST00000367614.5;ENST00000444136.5;ENST00000294848.12	2.840	1.002	1.097	0.233(2229)	0.312(219)	0.257(4463)	non tumor-specific	exon_skip	yes
EPN2_LS040	chr17:19332068|19333956:+	EPN2	epsin 2	protein coding gene	no	ENST00000314728.9;ENST00000347697.6;ENST00000395618.7;ENST00000575595.5;ENST00000395620.6;ENST00000571254.1	34.760	26.188	34.654	0.961(9209)	0.977(686)	0.97(16868)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
APOBR_LS002	chr16:28496089|28496117:+	APOBR	apolipoprotein B receptor	protein coding gene	no	ENST00000431282.2	20.269	0.095	0.912	0.001(12)	0.001(1)	0.127(2203)	non tumor-specific	intron_retention	yes
ITFG2_LS003	chr12:2817258|2824253:+	ITFG2	integrin alpha FG-GAP repeat containing 2	protein coding gene	no	ENST00000535564.1	0.525	0.286	0.649	0.591(5663)	0.635(446)	0.097(1693)	non tumor-specific	nAS	yes
UN_AL589843.1_LS0005	chr9:96687324|96688627:+	AL589843.1	-	lncRNA gene	no	.	1.572	0.238	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CHD1_LS0019	chr5:98886626|98888088:-	CHD1	chromodomain helicase DNA binding protein 1	protein coding gene	yes	.	1.635	0.014	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	nAS	no
CNGB1_LS037	chr16:57962872|57962974:-	CNGB1	cyclic nucleotide gated channel subunit beta 1	protein coding gene	no	ENST00000251102.12;ENST00000564448.5;ENST00000311183.8;ENST00000562761.1	2.780	0.000	0.752	0.006(60)	0(0)	0.023(399)	non tumor-specific	nAS	yes
ABCA7_LS040	chr19:1056243|1056330:+	ABCA7	ATP binding cassette subfamily A member 7	protein coding gene	no	ENST00000263094.10;ENST00000433129.5;ENST00000435683.6	14.900	5.581	12.642	0.801(7675)	0.821(576)	0.969(16849)	non tumor-specific	alt_3prime	yes
UN_IGHVII-15-1_UP_LS0001	chr14:106163958|106184919:-	IGHVII-15-1	immunoglobulin heavy variable (II)-15-1 (pseudogene)	no	no	.	9.584	2.297	0.000	0.004(39)	0.006(4)	0(0)	non tumor-specific	nAS	no
ASCC2_LS027	chr22:29822395|29825087:-	ASCC2	activating signal cointegrator 1 complex subunit 2	protein coding gene	no	ENST00000542393.5	0.218	0.200	0.653	0.049(471)	0.071(50)	0.102(1768)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_PAICS_LS0020	chr4:56459865|56460142:-	PAICS	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase	protein coding gene	no	.	3.983	0.437	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
DENND4B_LS045	chr1:153944397|153946301:-	DENND4B	DENN domain containing 4B	protein coding gene	no	ENST00000361217.8	0.814	0.322	0.787	0.447(4278)	0.412(289)	0.414(7195)	non tumor-specific	alt_5prime	yes
UN_LINC01615_UP_LS0006	chr6:169174134|169175552:-	LINC01615	long intergenic non-protein coding RNA 1615	lncRNA gene	no	.	5.329	0.195	0.000	0.022(211)	0.001(1)	0(0)	non tumor-specific	nAS	no
IVD_LS013	chr15:40414982|40415401:+	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	ENST00000487418.6;ENST00000479013.6;ENST00000473112.6;ENST00000491554.6;ENST00000497252.5;ENST00000560660.1	57.000	62.120	37.424	0.995(9532)	0.997(700)	0.979(17010)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_SERTAD4-AS1_LS0001	chr1:210231771|210232190:-	SERTAD4-AS1	SERTAD4 antisense RNA 1	lncRNA gene	no	.	3.137	1.407	0.000	0.065(621)	0.044(31)	0(0)	non tumor-specific	nAS	no
CTSO_LS007	chr4:155943264|155953713:-	CTSO	cathepsin O	protein coding gene	no	ENST00000433477.3	5.972	7.365	7.864	0.91(8719)	0.97(681)	0.945(16433)	non tumor-specific	nAS	yes
PTPRN_LS011	chr2:219296345|219296439:-	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	ENST00000409251.7;ENST00000295718.6;ENST00000462351.5;ENST00000423636.6;ENST00000497977.1	44.958	25.307	8.135	0.239(2290)	0.127(89)	0.485(8427)	non tumor-specific	exon_skip	yes
CRB2_LS004	chr9:123366366|123367172:+	CRB2	crumbs cell polarity complex component 2	protein coding gene	no	ENST00000359999.7;ENST00000373631.7	5.673	2.121	2.651	0.124(1185)	0.175(123)	0.227(3951)	non tumor-specific	alt_5prime;exon_skip	yes
UBASH3A_LS005	chr21:42409608|42410116:+	UBASH3A	ubiquitin associated and SH3 domain containing A	protein coding gene	no	ENST00000634453.1	0.297	0.000	0.777	0.001(9)	0(0)	0.077(1344)	non tumor-specific	nAS	yes
UN_COL3A1_LS0190	chr2:189004350|189005408:-	COL3A1	collagen type III alpha 1 chain	protein coding gene	no	.	3.538	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC062020.1_UP_LS0095	chr2:122429981|122432750:+	AC062020.1	-	lncRNA gene	no	.	4.275	1.097	0.000	0.011(102)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_DLEU1_LS0049	chr13:50665804|50712538:+	DLEU1	deleted in lymphocytic leukemia 1	lncRNA gene	yes	.	3.126	0.172	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
INTS1_LS042	chr7:1487957|1489344:-	INTS1	integrator complex subunit 1	protein coding gene	yes	ENST00000404767.7;ENST00000468115.1	57.385	31.316	44.228	0.985(9434)	0.994(698)	0.979(17015)	non tumor-specific	nAS	yes
UN_FLVCR1-DT_LS0001	chr1:212856921|212857766:-	FLVCR1-DT	FLVCR1 divergent transcript	lncRNA gene	no	.	1.482	0.757	0.000	0.011(107)	0.011(8)	0(0)	non tumor-specific	nAS	no
NSMF_LS007	chr9:137452435|137452553:-	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein coding gene	no	ENST00000437259.5;ENST00000371474.7;ENST00000371473.7;ENST00000371482.5;ENST00000371472.6;ENST00000371475.8;ENST00000265663.12;ENST00000484316.5;ENST00000482448.1	106.699	58.801	110.111	0.994(9527)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_NEIL3_LS0009	chr4:177339857|177351380:+	NEIL3	nei like DNA glycosylase 3	protein coding gene	no	.	1.439	0.085	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
LINC01934_LS009	chr2:181226535|181341046:+	LINC01934	long intergenic non-protein coding RNA 1934	lncRNA gene	no	ENST00000424655.1	0.391	0.000	0.615	0.001(12)	0(0)	0.004(67)	non tumor-specific	nAS	yes
UN_SNX18P10_UP_LS0032	chr21:8987197|8988509:-	SNX18P10	sorting nexin 18 pseudogene 10	pseudogene	no	.	8.399	0.431	0.000	0.002(20)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GLOD5_LS0008	chrX:48765689|48765835:+	GLOD5	glyoxalase domain containing 5	protein coding gene	no	.	2.065	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ATF6B_LS0044	chr6:32119948|32120771:-	ATF6B	activating transcription factor 6 beta	protein coding gene	no	.	24.814	13.339	0.000	0.268(2565)	0.276(194)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
KDM8_LS017	chr16:27215989|27218961:+	KDM8	lysine demethylase 8	protein coding gene	yes	ENST00000286096.8;ENST00000441782.6;ENST00000563571.5;ENST00000567785.5;ENST00000567366.1;ENST00000567735.1	5.507	8.322	4.091	0.945(9053)	0.983(690)	0.951(16533)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CASC1_LS016	chr12:25154456|25155311:-	CASC1	cilia and flagella associated protein 94	protein coding gene	yes	ENST00000556006.6;ENST00000354189.9;ENST00000395987.7;ENST00000320267.13;ENST00000395990.6;ENST00000554533.5;ENST00000545133.5;ENST00000557684.5;ENST00000556547.5;ENST00000556467.5;ENST00000554347.1;ENST00000555240.1	2.261	1.425	1.218	0.322(3087)	0.547(384)	0.468(8134)	non tumor-specific	nAS	yes
STIL_LS012	chr1:47280363|47280946:-	STIL	STIL centriolar assembly protein	protein coding gene	yes	ENST00000436811.1	0.382	0.097	0.657	0.149(1425)	0.034(24)	0.048(836)	non tumor-specific	exon_skip;intron_retention	yes
AL591485.1_LS065	chr6:9189035|9224939:+	AL591485.1	-	no	no	ENST00000646403.1;ENST00000642760.1	1.289	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	nAS	yes
APC_LS001	chr5:112707649|112754873:+	APC	APC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000509732.5	0.076	0.045	0.709	0.268(2563)	0.358(251)	0.234(4070)	non tumor-specific	alt_5prime;exon_skip	yes
AC008467.1_LS002	chr5:109320635|109321394:-	AC008467.1	-	lncRNA gene	no	ENST00000512693.1	1.256	0.246	1.608	0.017(159)	0.007(5)	0.669(11627)	non tumor-specific	nAS	yes
OTOAP1_LS002	chr16:22552513|22556843:+	OTOAP1	OTOA pseudogene 1	pseudogene	no	ENST00000550753.5;ENST00000548889.1	0.987	0.046	0.883	0.067(640)	0.036(25)	0.359(6235)	non tumor-specific	nAS	yes
SCRIB_LS047	chr8:143811345|143812266:-	SCRIB	scribble planar cell polarity protein	protein coding gene	yes	ENST00000356994.6;ENST00000320476.7;ENST00000377533.7;ENST00000356994.6;ENST00000320476.7;ENST00000377533.7	79.678	36.505	37.587	0.985(9433)	0.996(699)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
CLCN7_LS031	chr16:1465338|1474153:-	CLCN7	chloride voltage-gated channel 7	protein coding gene	no	ENST00000564568.1	0.087	0.008	0.612	0.404(3867)	0.412(289)	0.011(196)	non tumor-specific	nAS	yes
UN_HOXB3_LS0088	chr17:48590589|48602075:+	HOXB3	homeobox B3	protein coding gene	no	.	6.612	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ABI3_UP_LS0005	chr17:49132376|49141247:+	ABI3	ABI family member 3	protein coding gene	no	.	1.448	0.794	0.000	0.002(15)	0.017(12)	0(0)	non tumor-specific	nAS	no
EBF3_LS015	chr10:129873596|129877768:-	EBF3	EBF transcription factor 3	protein coding gene	yes	ENST00000368648.7;ENST00000355311.9	3.875	1.649	4.237	0.242(2319)	0.352(247)	0.67(11650)	non tumor-specific	nAS	yes
AC244154.1_LS005	chr17:38202105|38202238:-	AC244154.1	-	pseudogene	no	ENST00000649858.1;ENST00000620148.2	6.274	4.232	0.649	0.798(7647)	0.825(579)	0.125(2178)	non tumor-specific	intron_retention	yes
DNAJC5G_LS002	chr2:27275553|27276643:+	DNAJC5G	DnaJ heat shock protein family (Hsp40) member C5 gamma	protein coding gene	no	ENST00000406962.1	0.405	0.000	1.266	0(2)	0(0)	0(2)	non tumor-specific	nAS	yes
CATSPERG_LS049	chr19:38370073|38370159:+	CATSPERG	cation channel sperm associated auxiliary subunit gamma	protein coding gene	no	ENST00000471517.5	0.812	0.000	0.868	0.001(13)	0(0)	0.145(2514)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UBAP2L_LS004	chr1:154220975|154225084:+	UBAP2L	ubiquitin associated protein 2 like	protein coding gene	no	ENST00000613315.4;ENST00000428931.5;ENST00000271877.11;ENST00000441890.5;ENST00000368504.5;ENST00000613315.4;ENST00000428931.5;ENST00000271877.11;ENST00000441890.5;ENST00000368504.5	4.686	3.280	11.784	0.941(9017)	0.964(677)	0.974(16923)	non tumor-specific	alt_5prime;exon_skip	yes
RIN3_LS005	chr14:92577477|92586447:+	RIN3	Ras and Rab interactor 3	protein coding gene	no	ENST00000555908.5;ENST00000555891.1	0.377	0.173	0.982	0.574(5495)	0.449(315)	0.408(7096)	non tumor-specific	nAS	yes
PITPNM3_LS013	chr17:6471355|6472657:-	PITPNM3	PITPNM family member 3	protein coding gene	no	ENST00000421306.7;ENST00000262483.12;ENST00000572795.1	4.323	6.793	4.214	0.501(4797)	0.806(566)	0.774(13447)	non tumor-specific	alt_3prime;exon_skip	yes
LINC02004_LS001	chr3:134313617|134320920:+	LINC02004	long intergenic non-protein coding RNA 2004	lncRNA gene	no	ENST00000482019.1	0.254	0.211	0.710	0.15(1441)	0.231(162)	0.124(2163)	non tumor-specific	nAS	yes
APEX1_LS003	chr14:20455338|20455578:+	APEX1	apurinic/apyrimidinic endodeoxyribonuclease 1	protein coding gene	no	ENST00000555414.5	3.144	1.544	10.480	0.185(1776)	0.219(154)	0.974(16928)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_LINC00680_LS0015	chr6:57950072|57959028:-	LINC00680	long intergenic non-protein coding RNA 680	pseudogene	no	.	2.190	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
DNAH2_LS017	chr17:7740992|7742928:+	DNAH2	dynein axonemal heavy chain 2	protein coding gene	no	ENST00000572933.5;ENST00000570791.5;ENST00000389173.6;ENST00000575498.1	0.216	0.094	1.141	0.237(2271)	0.222(156)	0.179(3106)	non tumor-specific	alt_5prime	yes
G6PD_LS007	chrX:154533807|154534035:-	G6PD	glucose-6-phosphate dehydrogenase	protein coding gene	no	ENST00000369620.6	0.119	0.167	0.694	0.728(6973)	0.591(415)	0.166(2893)	non tumor-specific	alt_3prime	yes
FNBP1_LS026	chr9:129979374|129994843:-	FNBP1	formin binding protein 1	protein coding gene	no	ENST00000446176.6;ENST00000443566.6;ENST00000420781.5;ENST00000449089.6;ENST00000355681.3;ENST00000491905.1	24.105	17.114	29.922	0.965(9247)	0.99(695)	0.978(16993)	non tumor-specific	nAS	yes
GTF2H2C_LS019	chr5:69568207|69568520:+	GTF2H2C	GTF2H2 family member C	protein coding gene	no	ENST00000511629.6	0.013	0.008	0.622	0.274(2621)	0.172(121)	0.004(64)	non tumor-specific	nAS	yes
DLGAP4_LS005	chr20:36439868|36442727:+	DLGAP4	DLG associated protein 4	protein coding gene	no	ENST00000373913.7;ENST00000339266.9;ENST00000401952.6;ENST00000373907.6	2.046	2.343	8.607	0.123(1176)	0.011(8)	0.25(4354)	non tumor-specific	exon_skip	yes
UN_XIST_LS0063	chrX:73844748|73845040:-	XIST	X inactive specific transcript	lncRNA gene	yes	.	42.069	11.049	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_HLA-E_LS0157	chr6:30492830|30492931:-	HLA-E	major histocompatibility complex, class I, E	protein coding gene	no	.	9.689	2.567	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL7L1P11_UP_LS0013	chrX:148371708|148383075:+	RPL7L1P11	ribosomal protein L7 like 1 pseudogene 11	pseudogene	no	.	3.053	0.416	0.000	0.015(145)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC246787.2_UP_LS0083	chr14:105588209|105708044:+	AC246787.2	-	lncRNA gene	no	.	161.827	28.397	0.000	0.003(31)	0.004(3)	0(0)	non tumor-specific	nAS	no
SACS_LS008	chr13:23353876|23354519:-	SACS	sacsin molecular chaperone	protein coding gene	no	ENST00000402364.1;ENST00000382292.8;ENST00000455470.6;ENST00000423156.2;ENST00000476776.1	3.072	1.417	3.643	0.808(7742)	0.775(544)	0.903(15700)	non tumor-specific	intron_retention	yes
UN_PEX26_LS0019	chr22:18080013|18083427:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	1.207	3.092	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
ZNF292_LS002	chr6:87155361|87155563:+	ZNF292	zinc finger protein 292	protein coding gene	yes	ENST00000392985.3	0.605	0.471	1.223	0.124(1190)	0.158(111)	0.593(10306)	non tumor-specific	exon_skip	yes
UN_MT-TH_UP_LS0038	chrM:6048|11274:+	MT-TH	mitochondrially encoded tRNA-His (CAU/C)	small non-coding RNA gene	no	.	571.425	17.531	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
HSD17B1_LS002	chr17:42553291|42553439:+	HSD17B1	hydroxysteroid 17-beta dehydrogenase 1	protein coding gene	no	ENST00000585807.5;ENST00000593215.1;ENST00000590299.5;ENST00000225929.5	0.428	0.160	2.054	0.487(4667)	0.38(267)	0.771(13395)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
GRK6_LS017	chr5:177433676|177433914:+	GRK6	G protein-coupled receptor kinase 6	protein coding gene	no	ENST00000506296.5;ENST00000355472.9;ENST00000507633.5;ENST00000355958.9;ENST00000528793.5;ENST00000515666.5;ENST00000508705.1	72.123	32.849	30.989	0.995(9531)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_KLHL8_LS0014	chr4:87195690|87218094:-	KLHL8	kelch like family member 8	protein coding gene	no	.	1.547	0.331	0.000	0.012(111)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_RRAGC_LS0009	chr1:38855907|38856876:-	RRAGC	Ras related GTP binding C	protein coding gene	no	.	13.518	6.682	0.000	0.033(316)	0.046(32)	0(0)	non tumor-specific	alt_5prime	no
SATB1-AS1_LS061	chr3:18586908|18604189:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000599762.5	0.057	0.000	0.923	0.001(8)	0(0)	0.004(78)	non tumor-specific	nAS	yes
AL022310.1_LS001	chr1:173174574|173175089:-	AL022310.1	-	lncRNA gene	no	ENST00000436974.1	0.080	0.024	0.829	0.034(323)	0.027(19)	0.092(1593)	non tumor-specific	nAS	yes
UN_MOV10L1_LS0010	chr22:50142189|50143046:+	MOV10L1	Mov10 like RISC complex RNA helicase 1	protein coding gene	no	.	1.619	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_SMIM8_LS0030	chr6:87388797|87391780:+	SMIM8	small integral membrane protein 8	protein coding gene	no	.	1.978	0.140	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
INCENP_LS010	chr11:62140821|62140913:+	INCENP	inner centromere protein	protein coding gene	no	ENST00000394818.7;ENST00000278849.4;ENST00000528375.1	29.925	9.767	7.201	0.973(9322)	0.95(667)	0.968(16826)	non tumor-specific	nAS	yes
UN_ST13P6_UP_LS0002	chr8:133359286|133359537:+	ST13P6	ST13, Hsp70 interacting protein pseudogene 6	pseudogene	no	.	1.164	0.238	0.000	0.01(98)	0.001(1)	0(0)	non tumor-specific	nAS	no
UQCC2_LS008	chr6:33701420|33711585:-	UQCC2	ubiquinol-cytochrome c reductase complex assembly factor 2	protein coding gene	no	.;.	17.347	2.817	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC107959.2_LS0004	chr8:23074484|23074606:-	AC107959.2	-	lncRNA gene	no	.	2.966	0.000	0.000	0.006(53)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WBP1L_LS0017	chr10:102803275|102806088:-	WBP1L	WW domain binding protein 1 like	protein coding gene	no	.	5.253	0.304	0.000	0.011(103)	0.019(13)	0(0)	non tumor-specific	nAS	no
REEP4_LS013	chr8:22140248|22140607:-	REEP4	receptor accessory protein 4	protein coding gene	no	ENST00000521744.1	0.261	0.232	0.760	0.153(1465)	0.08(56)	0.184(3206)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
GBA_LS019	chr1:155240077|155240630:-	GBA	glucosylceramidase beta	protein coding gene	no	ENST00000368373.7;ENST00000327247.9;ENST00000427500.7;ENST00000484489.5;ENST00000493842.5;ENST00000473570.5	80.533	47.108	27.066	0.994(9527)	0.996(699)	0.978(17004)	non tumor-specific	alt_3prime;exon_skip	yes
MTUS2_LS016	chr13:29496450|29497238:+	MTUS2	microtubule associated scaffold protein 2	protein coding gene	no	ENST00000400542.3;ENST00000467990.1	0.154	0.086	1.112	0.131(1258)	0.09(63)	0.063(1090)	non tumor-specific	nAS	yes
UN_AL358472.5_LS0001	chr1:153923962|153926241:+	AL358472.5	-	lncRNA gene	no	.	1.674	0.000	0.000	0.005(44)	0(0)	0(0)	non tumor-specific	nAS	no
UBA2_LS009	chr19:34430659|34431861:+	UBA2	ubiquitin like modifier activating enzyme 2	protein coding gene	no	ENST00000607361.5;ENST00000246548.8;ENST00000592841.5;ENST00000439527.6	65.144	32.812	47.194	0.984(9426)	0.993(697)	0.979(17011)	non tumor-specific	alt_3prime;exon_skip	yes
NVL_LS021	chr1:224296618|224300562:-	NVL	nuclear VCP like	protein coding gene	no	ENST00000469968.5;ENST00000391875.6;ENST00000281701.10;ENST00000482491.5;ENST00000469075.5;ENST00000340871.8;ENST00000467882.5	25.907	10.253	14.095	0.961(9204)	0.974(684)	0.977(16983)	non tumor-specific	alt_5prime;exon_skip	yes
PPP6R3_LS039	chr11:68576043|68583043:+	PPP6R3	protein phosphatase 6 regulatory subunit 3	protein coding gene	no	ENST00000393800.6;ENST00000534534.5;ENST00000524904.5;ENST00000393801.7;ENST00000525421.5;ENST00000393800.6;ENST00000534534.5;ENST00000524904.5;ENST00000393801.7;ENST00000525421.5	44.361	30.239	23.747	0.965(9241)	0.986(692)	0.977(16990)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EHMT1_LS038	chr9:137775252|137776618:+	EHMT1	euchromatic histone lysine methyltransferase 1	protein coding gene	no	ENST00000460843.5;ENST00000462484.5;ENST00000371394.6;ENST00000636027.1;ENST00000637161.1;ENST00000637261.1;ENST00000638071.1;ENST00000640639.1;ENST00000462942.3	34.413	21.416	23.284	0.981(9402)	0.99(695)	0.979(17013)	non tumor-specific	exon_skip	yes
UN_FAM157A_LS0183	chr3:198220852|198221095:+	FAM157A	family with sequence similarity 157 member A	pseudogene	no	.	1.407	0.090	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_IFNGR2_LS0020	chr21:33437084|33439214:-	IFNGR2	interferon gamma receptor 2	protein coding gene	no	.	3.403	1.143	0.000	0.068(649)	0.054(38)	0(0)	non tumor-specific	alt_3prime	no
SULT1A1_LS025	chr16:28608859|28610130:-	SULT1A1	sulfotransferase family 1A member 1	protein coding gene	no	.;.	2.665	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
SYTL2_LS001	chr11:85695340|85696183:-	SYTL2	synaptotagmin like 2	protein coding gene	no	ENST00000359152.9;ENST00000389960.8;ENST00000532995.5;ENST00000354566.7;ENST00000316356.8;ENST00000525702.5;ENST00000525423.5;ENST00000389959.8;ENST00000529581.5;ENST00000389958.7;ENST00000530351.5;ENST00000528231.5;ENST00000531496.5;ENST00000525692.1;ENST00000533892.5;ENST00000527523.5;ENST00000634661.1;ENST00000524452.5	24.249	27.832	28.274	0.962(9214)	0.967(679)	0.973(16919)	non tumor-specific	alt_3prime	yes
UN_NPIPA7_LS0005	chr16:16387806|16391891:+	NPIPA7	nuclear pore complex interacting protein family member A7	protein coding gene	no	.	1.260	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_NOC2LP1_UP_LS0004	chr2:130197769|130202325:+	NOC2LP1	NOC2 like nucleolar associated transcriptional repressor pseudogene 1	pseudogene	no	.	1.039	0.402	0.000	0.034(323)	0.036(25)	0(0)	non tumor-specific	nAS	no
KLK11_LS013	chr19:51024310|51024634:-	KLK11	kallikrein related peptidase 11	protein coding gene	no	ENST00000319756.7;ENST00000594827.5;ENST00000594458.1	12.802	3.234	8.081	0.431(4129)	0.499(350)	0.347(6032)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PRRC2B_LS010	chr9:131439061|131444185:+	PRRC2B	proline rich coiled-coil 2B	protein coding gene	no	ENST00000405995.5;ENST00000638390.1;ENST00000357304.8	19.732	14.364	24.741	0.928(8893)	0.972(682)	0.976(16970)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RRP12_LS032	chr10:97388624|97396218:-	RRP12	ribosomal RNA processing 12 homolog	protein coding gene	no	ENST00000315563.10	0.784	0.314	0.640	0.368(3525)	0.295(207)	0.042(738)	non tumor-specific	exon_skip	yes
REPS2_LS006	chrX:17029623|17047347:+	REPS2	RALBP1 associated Eps domain containing 2	protein coding gene	no	ENST00000357277.7;ENST00000303843.7	12.128	14.464	4.340	0.824(7896)	0.929(652)	0.905(15729)	non tumor-specific	exon_skip	yes
UN_AKT2_LS0051	chr19:40233440|40233481:+	AKT2	AKT serine/threonine kinase 2	protein coding gene	yes	.	16.249	0.900	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	nAS	no
GCN1_LS028	chr12:120155040|120155241:-	GCN1	GCN1 activator of EIF2AK4	protein coding gene	no	ENST00000300648.6	28.449	16.314	22.781	0.964(9239)	0.99(695)	0.976(16964)	non tumor-specific	nAS	yes
UN_COA1_UP_LS0004	chr7:43749288|43750147:-	COA1	cytochrome c oxidase assembly factor 1 homolog	protein coding gene	no	.	5.722	0.193	0.000	0.007(69)	0.019(13)	0(0)	non tumor-specific	nAS	no
TBL1X_LS012	chrX:9654322|9684043:+	TBL1X	transducin beta like 1 X-linked	protein coding gene	no	ENST00000424279.5;ENST00000407597.6;ENST00000380961.5;ENST00000415293.5;ENST00000217964.11;ENST00000645353.1;ENST00000422314.5;ENST00000645686.1;ENST00000646640.1;ENST00000647172.1;ENST00000452824.5;ENST00000647060.1	7.725	8.698	5.937	0.865(8284)	0.97(681)	0.95(16507)	non tumor-specific	exon_skip	yes
UN_FN1_LS0004	chr2:215360987|215361046:+	FN1	fibronectin 1	protein coding gene	no	.	25.690	0.778	0.000	0.011(102)	0.003(2)	0(0)	non tumor-specific	nAS	no
MICALL1_LS021	chr22:37937819|37940709:+	MICALL1	MICAL like 1	protein coding gene	no	ENST00000424008.1	20.726	11.337	2.039	0.814(7797)	0.843(592)	0.805(13989)	non tumor-specific	alt_5prime;exon_skip	yes
LINC01881_LS007	chr2:242116232|242118965:+	LINC01881	long intergenic non-protein coding RNA 1881	pseudogene	no	ENST00000456398.5;ENST00000416103.2	3.791	2.068	4.920	0.379(3633)	0.494(347)	0.947(16455)	non tumor-specific	nAS	yes
AP001107.9_LS001	chr11:66348035|66353455:+	AP001107.9	-	lncRNA gene	no	.;.	1.130	0.458	0.000	0.001(10)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_EVC2_LS0012	chr4:5574772|5584623:-	EVC2	EvC ciliary complex subunit 2	protein coding gene	no	.	1.546	0.286	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_ABR_LS0129	chr17:1100735|1108879:-	ABR	ABR activator of RhoGEF and GTPase	protein coding gene	no	.	5.859	2.410	0.000	0.045(430)	0.047(33)	0(0)	non tumor-specific	alt_5prime	no
MCM5_LS016	chr22:35410381|35410744:+	MCM5	minichromosome maintenance complex component 5	protein coding gene	no	ENST00000464908.5	0.220	0.113	0.728	0.074(711)	0.073(51)	0.055(963)	non tumor-specific	nAS	yes
DGKH_LS037	chr13:42214612|42215575:+	DGKH	diacylglycerol kinase eta	protein coding gene	no	ENST00000379274.6;ENST00000337343.8;ENST00000261491.9;ENST00000628433.2;ENST00000627777.2;ENST00000626247.2;ENST00000536612.3;ENST00000498255.6;ENST00000489851.1	2.711	1.446	2.430	0.534(5114)	0.671(471)	0.812(14112)	non tumor-specific	alt_5prime	yes
UN_INTS4P1_LS0027	chr7:65212794|65230979:+	INTS4P1	integrator complex subunit 4 pseudogene 1	pseudogene	no	.	1.319	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHGP_UP_LS0002	chr14:105669844|105702662:-	IGHGP	immunoglobulin heavy constant gamma P (non-functional)	no	no	.	6.654	0.178	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
DCTN4_LS012	chr5:150731906|150733368:-	DCTN4	dynactin subunit 4	protein coding gene	no	ENST00000446090.6;ENST00000627368.2	0.673	0.726	2.581	0.046(445)	0.01(7)	0.107(1865)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PRKX_LS0015	chrX:3608939|3612177:-	PRKX	protein kinase X-linked	protein coding gene	no	.	1.892	0.822	0.000	0.002(18)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
UN_CEBPD_LS0031	chr8:47737319|47737392:+	CEBPD	CCAAT enhancer binding protein delta	protein coding gene	yes	.	4.249	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_STEAP1B_LS0096	chr7:22510645|22511627:+	STEAP1B	STEAP family member 1B	protein coding gene	no	.	11.451	4.107	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SUMO3_LS0006	chr21:44806138|44806311:+	SUMO3	small ubiquitin like modifier 3	protein coding gene	no	.	2.016	0.148	0.000	0.011(104)	0.004(3)	0(0)	non tumor-specific	nAS	no
CLCA4_LS011	chr1:86572720|86574540:+	CLCA4	chloride channel accessory 4	protein coding gene	no	ENST00000370563.3;ENST00000370563.3	15.545	188.801	2.634	0.21(2015)	0.318(223)	0.394(6857)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RNA5SP368_UP_LS0002	chr12:101744029|101744788:+	RNA5SP368	RNA, 5S ribosomal pseudogene 368	no	no	.	2.414	0.186	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
RALGAPA2_LS020	chr20:20535803|20536656:-	RALGAPA2	Ral GTPase activating protein catalytic subunit alpha 2	protein coding gene	no	ENST00000430436.5;ENST00000202677.11	11.293	8.905	7.545	0.799(7660)	0.95(667)	0.954(16578)	non tumor-specific	exon_skip	yes
REV3L_LS022	chr6:111363978|111365265:-	REV3L	REV3 like, DNA directed polymerase zeta catalytic subunit	protein coding gene	no	ENST00000434009.5;ENST00000368802.7;ENST00000368805.5;ENST00000422377.5;ENST00000435970.5;ENST00000358835.7;ENST00000413831.1	12.159	9.517	11.591	0.794(7611)	0.927(651)	0.964(16757)	non tumor-specific	exon_skip	yes
UN_MDC1_LS0052	chr6:30704539|30704663:+	MDC1	mediator of DNA damage checkpoint 1	protein coding gene	yes	.	2.055	0.176	0.000	0.009(86)	0.003(2)	0(0)	non tumor-specific	nAS	no
POU2F1_LS018	chr1:167370214|167371917:+	POU2F1	POU class 2 homeobox 1	protein coding gene	no	ENST00000367866.6;ENST00000557909.5;ENST00000271411.8;ENST00000442313.5;ENST00000560232.6;ENST00000429375.6;ENST00000367865.5;ENST00000541643.7;ENST00000648671.1;ENST00000367862.9;ENST00000420254.7;ENST00000470928.3	5.482	2.124	2.283	0.709(6791)	0.783(550)	0.883(15340)	non tumor-specific	nAS	yes
CPNE6_LS007	chr14:24071641|24072889:+	CPNE6	copine 6	protein coding gene	no	ENST00000560761.5	0.000	0.000	0.932	0.002(18)	0.001(1)	0.034(591)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CDC42EP1_LS0022	chr22:37566218|37566482:-	CDC42EP1	CDC42 effector protein 1	protein coding gene	no	.	1.824	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
RECQL_LS021	chr12:21499615|21501463:-	RECQL	RecQ like helicase	protein coding gene	no	ENST00000536240.5	0.014	0.043	0.998	0.585(5602)	0.603(423)	0.48(8336)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TUBB3P1_UP_LS0011	chr6:89140441|89148525:+	TUBB3P1	tubulin beta 3 class III pseudogene 1	pseudogene	no	.	0.985	0.293	0.000	0.008(77)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_ARAP2_LS0058	chr4:36212454|36213243:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	.	1.387	0.721	0.000	0.074(707)	0.098(69)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ITSN1_LS017	chr21:33755397|33756787:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000488166.1	0.028	0.000	0.627	0.001(12)	0.006(4)	0.007(123)	non tumor-specific	exon_skip	yes
UN_BLNK_LS0003	chr10:96197063|96199735:-	BLNK	B cell linker	protein coding gene	yes	.	2.495	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
AP000851.1_LS001	chr11:102606993|102607201:+	AP000851.1	-	lncRNA gene	no	ENST00000544115.1	1.164	0.152	0.563	0.013(125)	0.02(14)	0.004(70)	non tumor-specific	nAS	yes
SEC61A1_LS008	chr3:128055581|128055673:+	SEC61A1	SEC61 translocon subunit alpha 1	protein coding gene	no	ENST00000464451.5;ENST00000243253.7;ENST00000481210.5;ENST00000491668.1	148.163	78.396	79.592	0.99(9489)	0.996(699)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_CPNE8_LS0013	chr12:38684357|38695155:+	CPNE8	copine 8	protein coding gene	no	.	4.997	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FABP6_LS0021	chr5:160229222|160229546:+	FABP6	fatty acid binding protein 6	protein coding gene	no	.	4.453	1.238	0.000	0.034(328)	0.028(20)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
UN_LINC01854_UP_LS0016	chr2:129789971|129832275:-	LINC01854	long intergenic non-protein coding RNA 1854	lncRNA gene	no	.	2.093	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WDFY1_LS0022	chr2:223895579|223898958:-	WDFY1	WD repeat and FYVE domain containing 1	protein coding gene	no	.	26.204	0.304	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_UNQ6494_UP_LS0001	chr9:89624041|89624633:+	UNQ6494	-	lncRNA gene	no	.	3.190	2.226	0.000	0.007(67)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_VASH1-AS1_LS0002	chr14:76783662|76786085:-	VASH1-AS1	VASH1 antisense RNA 1	lncRNA gene	no	.	2.425	0.269	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
MARC1_LS002	chr1:220791127|220791491:+	MARC1	mitochondrial amidoxime reducing component 1	protein coding gene	no	ENST00000492847.1	0.052	0.043	0.681	0.241(2311)	0.336(236)	0.055(951)	non tumor-specific	alt_5prime	yes
UN_PABPC4_LS0026	chr1:39565395|39567751:-	PABPC4	poly(A) binding protein cytoplasmic 4	protein coding gene	no	.	20.424	5.422	0.000	0.012(116)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PRODH_LS0002	chr22:18913526|18916974:-	PRODH	proline dehydrogenase 1	protein coding gene	yes	.	39.006	1.396	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PMM2_LS0031	chr16:8849096|8849152:-	PMM2	phosphomannomutase 2	protein coding gene	no	.	6.092	0.766	0.000	0.005(45)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ANKLE2_LS0054	chr12:132750535|132750643:-	ANKLE2	ankyrin repeat and LEM domain containing 2	protein coding gene	no	.	0.874	0.371	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYH14_LS0027	chr19:50226044|50226128:-	MYH14	myosin heavy chain 14	protein coding gene	no	.	10.197	6.010	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	nAS	no
GSN_LS014	chr9:121281562|121282439:+	GSN	gelsolin	protein coding gene	yes	ENST00000449733.7;ENST00000483960.5	0.054	1.051	2.710	0.744(7133)	0.869(610)	0.835(14512)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL359757.2_UP_LS0002	chr13:25117015|25117145:+	AL359757.2	-	lncRNA gene	no	.	5.421	0.902	0.000	0.007(71)	0.01(7)	0(0)	non tumor-specific	nAS	no
DENND1C_LS003	chr19:6468645|6468846:-	DENND1C	DENN domain containing 1C	protein coding gene	no	ENST00000590444.5;ENST00000381480.6;ENST00000590818.5;ENST00000590867.5;ENST00000543576.5;ENST00000591795.1	14.925	3.013	5.332	0.91(8718)	0.937(658)	0.909(15796)	non tumor-specific	alt_3prime;intron_retention	yes
UN_RNF157_UP_LS0008	chr17:76261264|76262603:-	RNF157	ring finger protein 157	protein coding gene	no	.	1.643	0.421	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	nAS	no
MAP7D1_LS006	chr1:36172627|36173364:+	MAP7D1	MAP7 domain containing 1	protein coding gene	no	ENST00000429533.6;ENST00000316156.8;ENST00000373150.8;ENST00000373151.6;ENST00000462118.1;ENST00000474796.1	72.938	56.869	138.401	0.996(9541)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
SSPO_LS059	chr7:149804087|149805411:+	SSPO	SCO-spondin, pseudogene	protein coding gene	no	ENST00000623373.3;ENST00000378016.4	1.599	0.195	1.521	0.027(256)	0.003(2)	0.601(10448)	non tumor-specific	nAS	yes
USP54_LS019	chr10:73529911|73530143:-	USP54	ubiquitin specific peptidase 54	protein coding gene	no	ENST00000418501.5;ENST00000466048.6;ENST00000424265.5;ENST00000339859.8;ENST00000497106.5;ENST00000498143.5;ENST00000480210.1	14.550	16.355	14.210	0.924(8853)	0.917(644)	0.942(16379)	non tumor-specific	exon_skip	yes
LY75-CD302_LS002	chr2:159777964|159780005:-	LY75-CD302	LY75-CD302 readthrough	protein coding gene	no	ENST00000504764.5;ENST00000505052.1	41.597	51.031	29.076	0.954(9138)	0.994(698)	0.978(16996)	non tumor-specific	exon_skip	yes
UN_AC112240.1_UP_LS0004	chr4:157373748|157374329:-	AC112240.1	-	pseudogene	no	.	3.243	0.194	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
MUC16_LS064	chr19:8904028|8904642:-	MUC16	mucin 16, cell surface associated	protein coding gene	no	ENST00000397910.8	6.360	1.755	1.468	0.117(1122)	0.123(86)	0.094(1640)	non tumor-specific	mutex_exons	yes
UN_MESP2_UP_LS0001	chr15:89753764|89756156:+	MESP2	mesoderm posterior bHLH transcription factor 2	protein coding gene	no	.	3.011	0.890	0.000	0.008(73)	0.006(4)	0(0)	non tumor-specific	nAS	no
TXNRD3_LS003	chr3:126607973|126608499:-	TXNRD3	thioredoxin reductase 3	protein coding gene	no	ENST00000519162.1;ENST00000383572.2;ENST00000524230.6;ENST00000518740.5;ENST00000523403.2;ENST00000640797.1;ENST00000640433.1	15.324	8.398	12.664	0.933(8937)	0.929(652)	0.954(16587)	non tumor-specific	nAS	yes
UN_ZFPM1_LS0052	chr16:88528238|88532005:+	ZFPM1	zinc finger protein, FOG family member 1	protein coding gene	no	.	7.158	1.235	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
BDNF-AS_LS011	chr11:27659228|27675297:+	BDNF-AS	BDNF antisense RNA	lncRNA gene	no	ENST00000499008.7	0.193	0.115	0.884	0.294(2818)	0.417(293)	0.344(5971)	non tumor-specific	nAS	yes
C8orf59_LS005	chr8:85215037|85217386:-	C8orf59	ribosomal biogenesis factor	protein coding gene	no	ENST00000619594.4;ENST00000612977.4;ENST00000612809.4;ENST00000611854.4;ENST00000615697.4;ENST00000523281.5;ENST00000619594.4;ENST00000612977.4;ENST00000612809.4;ENST00000611854.4;ENST00000615697.4;ENST00000523281.5	163.817	80.241	170.356	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
WDR5_LS014	chr9:134154541|134155693:+	WDR5	WD repeat domain 5	protein coding gene	no	.;.	5.187	0.000	0.000	0(4)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
GP2_LS033	chr16:20326467|20327467:-	GP2	glycoprotein 2	protein coding gene	no	ENST00000302555.9;ENST00000341642.9;ENST00000381362.8;ENST00000381360.9;ENST00000572478.5;ENST00000575730.1	8.724	10.589	2.154	0.15(1438)	0.328(230)	0.469(8144)	non tumor-specific	alt_3prime;mutex_exons	yes
UN_IGHA1_LS0063	chr14:105707424|105707929:+	IGHA1	immunoglobulin heavy constant alpha 1	no	no	.	346.946	14.803	0.000	0.004(41)	0.003(2)	0(0)	non tumor-specific	nAS	no
ZNF185_LS028	chrX:152941830|152945267:+	ZNF185	zinc finger protein 185 with LIM domain	protein coding gene	yes	ENST00000454925.1	0.546	0.247	0.902	0.443(4240)	0.547(384)	0.471(8181)	non tumor-specific	alt_5prime	yes
AP005131.3_LS001	chr18:13561906|13562880:-	AP005131.3	-	lncRNA gene	no	ENST00000590042.1	6.321	0.052	0.515	0.001(5)	0.001(1)	0(3)	non tumor-specific	nAS	yes
UN_TRIB1_UP_LS0005	chr8:125418251|125420699:+	TRIB1	tribbles pseudokinase 1	protein coding gene	yes	.	1.571	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
SDK2_LS002	chr17:73348725|73350237:-	SDK2	sidekick cell adhesion molecule 2	protein coding gene	no	ENST00000392650.7;ENST00000424778.1;ENST00000410094.5	6.915	2.206	1.850	0.469(4494)	0.575(404)	0.634(11024)	non tumor-specific	nAS	yes
UN_LINC01901_LS0013	chr18:39879305|39909524:-	LINC01901	long intergenic non-protein coding RNA 1901	lncRNA gene	no	.	1.266	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_COL18A1_LS0068	chr21:45483974|45484006:-	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	.	4.096	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SEMA4D_LS028	chr9:89418118|89418363:-	SEMA4D	semaphorin 4D	protein coding gene	no	ENST00000420987.5;ENST00000537934.5;ENST00000450295.5;ENST00000438547.6;ENST00000356444.6;ENST00000482128.1	1.427	1.347	2.150	0.672(6434)	0.739(519)	0.693(12049)	non tumor-specific	alt_5prime;exon_skip	yes
GOLGA4_LS005	chr3:37251467|37282092:+	GOLGA4	golgin A4	protein coding gene	no	ENST00000435830.6	0.738	0.000	0.649	0.003(31)	0.001(1)	0.064(1116)	non tumor-specific	nAS	yes
SOX10_LS008	chr22:37978135|37983357:-	SOX10	SRY-box transcription factor 10	protein coding gene	no	ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1;ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1;ENST00000446929.5;ENST00000396884.6;ENST00000360880.6;ENST00000427770.1	4.546	1.312	11.376	0.197(1889)	0.308(216)	0.787(13682)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FAM25G_LS0002	chr10:47489648|47490840:-	FAM25G	family with sequence similarity 25 member G	protein coding gene	no	.	4.942	0.593	0.000	0.015(148)	0.014(10)	0(0)	non tumor-specific	nAS	no
TTN_LS209	chr2:178665791|178666824:-	TTN	titin	protein coding gene	no	ENST00000589042.5	2.540	0.000	0.748	0.001(5)	0(0)	0.032(552)	non tumor-specific	exon_skip	yes
UN_MRPL34_LS0042	chr19:17306438|17306532:-	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	.	2.706	6.829	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADK_LS011	chr10:74398579|74525256:+	ADK	adenosine kinase	protein coding gene	no	ENST00000286621.6;ENST00000541550.5;ENST00000372734.3	88.065	59.064	33.250	0.994(9525)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
DNPEP_LS024	chr2:219386778|219386892:-	DNPEP	aspartyl aminopeptidase	protein coding gene	no	ENST00000520694.6;ENST00000273075.8;ENST00000373972.5;ENST00000523282.5;ENST00000373963.5;ENST00000373966.5;ENST00000457935.5;ENST00000429013.5;ENST00000521459.5;ENST00000460963.5;ENST00000322176.11;ENST00000434339.5;ENST00000430206.5;ENST00000523527.5;ENST00000519698.1;ENST00000519905.1	57.640	37.738	60.080	0.997(9548)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime	yes
UN_SDC1_LS0199	chr2:20203205|20203949:+	SDC1	syndecan 1	protein coding gene	no	.	8.003	0.465	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ASPM_LS0030	chr1:197125191|197129187:-	ASPM	assembly factor for spindle microtubules	protein coding gene	no	.	11.121	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
SERPINE3_LS006	chr13:51347234|51348213:+	SERPINE3	serpin family E member 3	protein coding gene	no	ENST00000524365.5;ENST00000521255.5;ENST00000400389.5	17.898	0.059	0.825	0.007(69)	0.007(5)	0.101(1752)	non tumor-specific	nAS	yes
UN_AHNAK2_LS0491	chr14:104949855|104950351:+	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	2.308	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ENPP7P10_LS0006	chr4:9102838|9103383:+	ENPP7P10	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10	pseudogene	no	.	0.971	0.580	0.000	0.003(29)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TNKS2_LS0037	chr10:91845028|91845550:+	TNKS2	tankyrase 2	protein coding gene	no	.	3.629	0.094	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
PLEKHG4B_LS004	chr5:143503|144827:+	PLEKHG4B	pleckstrin homology and RhoGEF domain containing G4B	protein coding gene	no	ENST00000637938.1;ENST00000283426.11;ENST00000502646.1	6.637	1.414	1.306	0.443(4241)	0.483(339)	0.303(5264)	non tumor-specific	exon_skip	yes
SIN3A_LS037	chr15:75446395|75455788:-	SIN3A	SIN3 transcription regulator family member A	protein coding gene	no	ENST00000568309.5	0.234	0.054	0.633	0.029(281)	0.016(11)	0.034(599)	non tumor-specific	exon_skip;mutex_exons	yes
CD82_LS001	chr11:44564502|44587475:+	CD82	CD82 molecule	protein coding gene	yes	ENST00000526958.5	0.090	0.091	0.836	0.766(7342)	0.863(606)	0.207(3605)	non tumor-specific	alt_5prime	yes
PHB2_LS015	chr12:6968021|6968411:-	PHB2	prohibitin 2	protein coding gene	no	ENST00000543465.5;ENST00000535923.5;ENST00000399433.6;ENST00000542912.5;ENST00000440277.5;ENST00000545167.5;ENST00000544888.5;ENST00000536316.2	490.936	273.180	300.398	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
INCENP_LS012	chr11:62141044|62144982:+	INCENP	inner centromere protein	protein coding gene	no	ENST00000278849.4	12.284	4.960	2.986	0.956(9155)	0.91(639)	0.904(15720)	non tumor-specific	exon_skip	yes
UN_AC103982.1_UP_LS0007	chr15:88895528|88901551:-	AC103982.1	-	lncRNA gene	no	.	49.692	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
MROH8_LS015	chr20:37137970|37141162:-	MROH8	maestro heat like repeat family member 8	protein coding gene	no	ENST00000343811.8;ENST00000400441.7;ENST00000400440.6;ENST00000421643.1	1.296	0.828	1.844	0.375(3591)	0.585(411)	0.779(13546)	non tumor-specific	exon_skip	yes
UN_WDPCP_LS0099	chr2:63678253|63813622:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	.	3.151	1.319	0.000	0.003(28)	0.03(21)	0(0)	non tumor-specific	exon_skip	no
UN_PLEKHS1_LS0055	chr10:113781250|113781397:-	PLEKHS1	pleckstrin homology domain containing S1	protein coding gene	no	.	1.595	0.372	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
RELL2_LS020	chr5:141640445|141640671:+	RELL2	RELT like 2	protein coding gene	no	ENST00000520674.5;ENST00000444782.5;ENST00000518025.5;ENST00000297164.7;ENST00000518856.1	2.780	1.663	7.827	0.901(8637)	0.828(581)	0.949(16498)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
NIPAL2_LS017	chr8:98217198|98222479:-	NIPAL2	NIPA like domain containing 2	protein coding gene	no	ENST00000522188.5	0.071	0.051	0.720	0.293(2806)	0.377(265)	0.236(4102)	non tumor-specific	alt_3prime	yes
UN_HAND2-AS1_LS0015	chr4:173609211|173658719:+	HAND2-AS1	HAND2 antisense RNA 1	lncRNA gene	no	.	0.796	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CC2D1A_LS0018	chr19:13919939|13920557:+	CC2D1A	coiled-coil and C2 domain containing 1A	protein coding gene	no	.	9.560	6.270	0.000	0.642(6154)	0.704(494)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_NACC1_LS0008	chr19:13131813|13135200:+	NACC1	nucleus accumbens associated 1	protein coding gene	no	.	1.353	0.001	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
COPRS_LS009	chr17:31856865|31858825:-	COPRS	coordinator of PRMT5 and differentiation stimulator	protein coding gene	no	ENST00000579741.1	0.085	0.049	0.695	0.489(4686)	0.479(336)	0.046(799)	non tumor-specific	alt_5prime	yes
INPP4B_LS053	chr4:142468055|142514224:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	ENST00000506243.5	0.036	0.030	0.711	0.004(41)	0.009(6)	0.001(21)	non tumor-specific	nAS	yes
ITFG2_LS002	chr12:2812856|2820086:+	ITFG2	integrin alpha FG-GAP repeat containing 2	protein coding gene	no	ENST00000537851.5	0.113	0.061	0.980	0.472(4527)	0.56(393)	0.501(8702)	non tumor-specific	nAS	yes
HLA-G_LS013	chr6:29830410|29830553:+	HLA-G	major histocompatibility complex, class I, G	protein coding gene	no	ENST00000478519.5	58.526	29.944	1.748	0.23(2203)	0.276(194)	0.669(11625)	non tumor-specific	alt_3prime;exon_skip	yes
SLC5A4_LS011	chr22:32247515|32248743:-	SLC5A4	solute carrier family 5 member 4	protein coding gene	no	ENST00000266086.5	2.595	1.942	1.075	0.044(417)	0.094(66)	0.393(6829)	non tumor-specific	nAS	yes
UN_CAPN12_LS0019	chr19:38737595|38738273:-	CAPN12	calpain 12	protein coding gene	no	.	2.620	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_SYAP1_LS0039	chrX:16763609|16764130:-	SYAP1	synapse associated protein 1	protein coding gene	no	.	1.159	0.645	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RN7SL357P_UP_LS0002	chr4:56799583|56800125:+	RN7SL357P	RNA, 7SL, cytoplasmic 357, pseudogene	small non-coding RNA gene	no	.	3.371	0.416	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_LINC02408_UP_LS0003	chr12:67349398|67421157:+	LINC02408	long intergenic non-protein coding RNA 2408	lncRNA gene	no	.	4.843	0.189	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
MSI1_LS012	chr12:120359053|120361394:-	MSI1	musashi RNA binding protein 1	protein coding gene	yes	ENST00000546622.1	0.070	0.046	0.897	0.211(2023)	0.11(77)	0.127(2206)	non tumor-specific	nAS	yes
UN_RND3_LS0016	chr2:150509332|150518988:+	RND3	Rho family GTPase 3	protein coding gene	yes	.	2.867	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
PRSS54_LS009	chr16:58294212|58294887:-	PRSS54	serine protease 54	protein coding gene	no	ENST00000219301.8;ENST00000543437.5;ENST00000569727.1	0.912	0.000	0.789	0.004(35)	0(0)	0.008(143)	non tumor-specific	alt_3prime	yes
PRRC2A_LS031	chr6:31636608|31636733:+	PRRC2A	proline rich coiled-coil 2A	protein coding gene	no	ENST00000376007.8;ENST00000376033.2;ENST00000492691.5;ENST00000462617.1	182.430	82.677	171.660	0.998(9560)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
AGL_LS038	chr1:99916497|99916598:+	AGL	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	protein coding gene	no	ENST00000361915.7;ENST00000294724.8;ENST00000370165.7;ENST00000370163.7;ENST00000361302.7;ENST00000370161.6;ENST00000637337.1	19.867	19.775	14.106	0.962(9221)	0.991(696)	0.969(16838)	non tumor-specific	nAS	yes
HNRNPL_LS016	chr19:38843914|38844008:-	HNRNPL	heterogeneous nuclear ribonucleoprotein L	protein coding gene	no	ENST00000647557.1;ENST00000221419.9;ENST00000601449.5;ENST00000388749.7;ENST00000600873.5;ENST00000598985.5;ENST00000601047.5;ENST00000600233.5	178.925	98.216	310.920	0.997(9550)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
MAP4K5_LS025	chr14:50462781|50464052:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000013125.8;ENST00000557210.5	18.638	13.407	33.193	0.945(9050)	0.977(686)	0.978(16995)	non tumor-specific	nAS	yes
FAM86B1_LS014	chr8:12186833|12193975:-	FAM86B1	family with sequence similarity 86 member B1	protein coding gene	no	ENST00000530385.5	0.043	0.022	0.674	0.186(1778)	0.275(193)	0.093(1608)	non tumor-specific	exon_skip	yes
UN_NFE2L3_UP_LS0019	chr7:25941319|25944254:+	NFE2L3	nuclear factor, erythroid 2 like 3	protein coding gene	no	.	1.187	0.223	0.000	0.002(23)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ERO1B_LS0025	chr1:236268436|236269875:-	ERO1B	endoplasmic reticulum oxidoreductase 1 beta	protein coding gene	no	.	1.816	0.122	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
RAD54L2_LS003	chr3:51627754|51629334:+	RAD54L2	RAD54 like 2	protein coding gene	no	ENST00000487093.5;ENST00000409535.6	2.360	1.654	4.499	0.605(5801)	0.758(532)	0.918(15952)	non tumor-specific	exon_skip	yes
UN_MRPL34_LS0008	chr19:17292854|17296716:+	MRPL34	mitochondrial ribosomal protein L34	protein coding gene	no	.	4.023	0.481	0.000	0.088(841)	0.048(34)	0(0)	non tumor-specific	exon_skip	no
UN_PSMF1_LS0069	chr20:1165794|1166227:+	PSMF1	proteasome inhibitor subunit 1	protein coding gene	no	.	63.943	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF783_LS020	chr7:149289457|149289938:+	ZNF783	zinc finger family member 783	protein coding gene	no	.;.;.	1.314	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_AHR_UP_LS0011	chr7:16915631|16916052:+	AHR	aryl hydrocarbon receptor	protein coding gene	yes	.	0.788	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
ATP10A_LS027	chr15:25841763|25861782:-	ATP10A	ATPase phospholipid transporting 10A (putative)	protein coding gene	no	ENST00000389967.8;ENST00000553577.1	0.274	0.074	0.681	0.005(49)	0.01(7)	0.05(869)	non tumor-specific	exon_skip	yes
UN_AL139039.2_UP_LS0005	chr6:10653126|10656878:-	AL139039.2	-	pseudogene	no	.	1.830	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
TNRC6A_LS002	chr16:24641009|24750726:+	TNRC6A	trinucleotide repeat containing adaptor 6A	protein coding gene	no	ENST00000566108.2	3.280	0.000	1.130	0.006(55)	0(0)	0.105(1825)	non tumor-specific	nAS	yes
PTPN20_LS006	chr10:46911842|46940582:+	PTPN20	protein tyrosine phosphatase non-receptor type 20	protein coding gene	no	ENST00000508715.5	0.022	0.000	0.666	0.008(75)	0.006(4)	0.009(159)	non tumor-specific	nAS	yes
UN_EIF5B_LS0001	chr2:99337589|99354037:+	EIF5B	eukaryotic translation initiation factor 5B	protein coding gene	no	.	0.310	0.092	0.000	0.028(265)	0.043(30)	0(0)	non tumor-specific	exon_skip	no
ANKRD11_LS028	chr16:89305344|89313317:-	ANKRD11	ankyrin repeat domain 11	protein coding gene	no	ENST00000378332.7;ENST00000564553.5	0.372	0.428	1.632	0.892(8543)	0.907(637)	0.76(13214)	non tumor-specific	alt_5prime;exon_skip	yes
UN_COL1A1_LS0744	chr17:50193049|50193945:+	COL1A1	collagen type I alpha 1 chain	protein coding gene	no	.	19.072	0.119	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
SDCBP_LS016	chr8:58572314|58578048:+	SDCBP	syndecan binding protein	protein coding gene	no	ENST00000520168.5	1.825	1.320	1.059	0.92(8819)	0.972(682)	0.532(9249)	non tumor-specific	alt_3prime;exon_skip	yes
HERPUD1_LS011	chr16:56936817|56939895:+	HERPUD1	homocysteine inducible ER protein with ubiquitin like domain 1	protein coding gene	no	ENST00000563911.5	0.046	0.140	0.718	0.221(2117)	0.291(204)	0.166(2888)	non tumor-specific	exon_skip	yes
GAL3ST2_LS001	chr2:241776984|241799065:+	GAL3ST2	galactose-3-O-sulfotransferase 3	protein coding gene	no	ENST00000192314.6	1.552	2.258	0.861	0.17(1631)	0.121(85)	0.061(1056)	non tumor-specific	nAS	yes
UN_CUL1_LS0028	chr7:148798019|148798576:+	CUL1	cullin 1	protein coding gene	yes	.	36.939	6.965	0.000	0.014(130)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
GRIP1_LS033	chr12:66539223|66541815:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000398016.7;ENST00000359742.8;ENST00000538211.5;ENST00000540433.5;ENST00000536215.5;ENST00000545666.5;ENST00000542309.5;ENST00000539540.5;ENST00000541947.1	3.960	1.696	2.167	0.392(3759)	0.506(355)	0.537(9339)	non tumor-specific	nAS	yes
SYVN1_LS003	chr11:65122445|65129729:-	SYVN1	synoviolin 1	protein coding gene	no	ENST00000530451.1	0.082	0.020	0.652	0.059(564)	0.068(48)	0.028(492)	non tumor-specific	nAS	yes
UN_ZMIZ1_LS0180	chr10:79315291|79315336:+	ZMIZ1	zinc finger MIZ-type containing 1	protein coding gene	no	.	8.172	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC139530.1_UP_LS0001	chr17:81797836|81797886:-	AC139530.1	-	lncRNA gene	no	.	0.744	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBE2Q2_LS0017	chr15:75873568|75879098:+	UBE2Q2	ubiquitin conjugating enzyme E2 Q2	protein coding gene	no	.	4.352	0.142	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TSC22D3_LS011	chrX:107775525|107776003:-	TSC22D3	TSC22 domain family member 3	protein coding gene	no	ENST00000502650.1	0.062	0.114	0.707	0.142(1358)	0.162(114)	0.207(3598)	non tumor-specific	alt_3prime	yes
ARHGAP35_LS001	chr19:46922356|46937264:+	ARHGAP35	Rho GTPase activating protein 35	protein coding gene	no	ENST00000614079.1;ENST00000404338.7	37.809	34.964	31.059	0.963(9226)	0.974(684)	0.979(17010)	non tumor-specific	exon_skip	yes
WDR36_LS005	chr5:111100721|111102345:+	WDR36	WD repeat domain 36	protein coding gene	no	ENST00000506538.6;ENST00000612402.4;ENST00000513710.3;ENST00000505303.5;ENST00000504122.2	7.875	4.400	4.117	0.868(8312)	0.954(670)	0.912(15845)	non tumor-specific	alt_3prime	yes
UN_ITGB2_LS0086	chr21:44927744|44927854:+	ITGB2	integrin subunit beta 2	protein coding gene	no	.	1.137	0.073	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ABCB10_LS0031	chr1:229549584|229558136:-	ABCB10	ATP binding cassette subfamily B member 10	protein coding gene	no	.	0.369	0.031	0.000	0.006(62)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
UN_CADPS2_LS0038	chr7:122663569|122702193:-	CADPS2	calcium dependent secretion activator 2	protein coding gene	no	.	0.994	0.461	0.000	0.012(114)	0.02(14)	0(0)	non tumor-specific	nAS	no
THADA_LS062	chr2:43592416|43595647:-	THADA	THADA armadillo repeat containing	protein coding gene	no	ENST00000405006.8;ENST00000405006.8	0.507	0.359	0.850	0.486(4653)	0.6(421)	0.439(7639)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
PKP4_LS035	chr2:158666563|158669151:+	PKP4	plakophilin 4	protein coding gene	no	ENST00000495123.5	0.210	0.084	1.990	0.611(5853)	0.631(443)	0.711(12350)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
ABTB1_LS018	chr3:127676581|127676967:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000467179.5;ENST00000468137.5;ENST00000491633.5;ENST00000478298.5;ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000467179.5;ENST00000468137.5;ENST00000491633.5;ENST00000478298.5	11.164	11.698	94.467	0.991(9498)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AL390728.4_LS0007	chr1:247191014|247191260:-	AL390728.4	-	pseudogene	no	.	1.802	0.531	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
MACF1_LS098	chr1:39439500|39441003:+	MACF1	microtubule actin crosslinking factor 1	protein coding gene	no	ENST00000567887.5;ENST00000372915.7;ENST00000361689.6;ENST00000564288.5;ENST00000372925.6;ENST00000289893.8;ENST00000469490.1	58.364	52.219	77.845	0.934(8949)	0.986(692)	0.979(17010)	non tumor-specific	exon_skip	yes
UN_KRT75_UP_LS0028	chr12:52450578|52472240:-	KRT75	keratin 75	protein coding gene	no	.	596.247	1.690	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLEC18C_LS001	chr16:70173648|70174173:+	CLEC18C	C-type lectin domain family 18 member C	protein coding gene	no	ENST00000562923.5;ENST00000618957.4	0.121	0.235	1.040	0.131(1251)	0.177(124)	0.01(166)	non tumor-specific	alt_3prime;alt_5prime	yes
CASP3_LS006	chr4:184635418|184638401:-	CASP3	caspase 3	protein coding gene	no	ENST00000393585.6;ENST00000308394.8;ENST00000523916.5;ENST00000517513.5;ENST00000393588.8;ENST00000447121.2	28.667	15.941	10.696	0.972(9309)	0.993(697)	0.976(16957)	non tumor-specific	alt_3prime;exon_skip	yes
ANKRD20A3_LS008	chr9:66127780|66131728:-	ANKRD20A3	ankyrin repeat domain 20 family member A3, pseudogene	protein coding gene	no	ENST00000611388.1	0.152	0.047	0.695	0.105(1008)	0.145(102)	0.003(44)	non tumor-specific	nAS	yes
UN_AL512306.3_UP_LS0010	chr1:204558729|204558948:+	AL512306.3	-	lncRNA gene	no	.	3.133	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_SIAH2_UP_LS0001	chr3:150764193|150770564:-	SIAH2	siah E3 ubiquitin protein ligase 2	protein coding gene	no	.	5.085	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MIR205HG_LS009	chr1:209430500|209431743:+	MIR205HG	MIR205 host gene	lncRNA gene	no	ENST00000429156.5	22.883	8.135	26.959	0.403(3863)	0.387(272)	0.25(4352)	non tumor-specific	nAS	yes
UN_CSRP1_LS0044	chr1:201483786|201483827:+	CSRP1	cysteine and glycine rich protein 1	protein coding gene	no	.	12.400	8.251	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_JMJD1C_LS0052	chr10:63195350|63197411:-	JMJD1C	jumonji domain containing 1C	protein coding gene	no	.	1.129	0.256	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_3prime	no
RASGRP1_LS031	chr15:38560005|38564973:-	RASGRP1	RAS guanyl releasing protein 1	protein coding gene	no	ENST00000561117.5	0.010	0.010	0.852	0.126(1203)	0.172(121)	0.019(326)	non tumor-specific	nAS	yes
CARNMT1_LS010	chr9:75017448|75028012:-	CARNMT1	carnosine N-methyltransferase 1	protein coding gene	no	ENST00000376834.7;ENST00000376830.3	2.762	1.920	2.755	0.916(8772)	0.962(675)	0.877(15249)	non tumor-specific	exon_skip	yes
SULT1B1_LS003	chr4:69733507|69734138:-	SULT1B1	sulfotransferase family 1B member 1	protein coding gene	no	ENST00000310613.7	5.205	12.633	1.834	0.221(2113)	0.358(251)	0.49(8510)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ZNF283_LS0006	chr19:43828281|43830263:+	ZNF283	zinc finger protein 283	protein coding gene	no	.	1.032	0.069	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
UN_AC244517.8_LS0002	chr5:141178069|141182298:+	AC244517.8	-	lncRNA gene	no	.	0.501	0.022	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
BLK_LS003	chr8:11494591|11546052:+	BLK	BLK proto-oncogene, Src family tyrosine kinase	protein coding gene	yes	ENST00000529894.1	0.046	1.755	1.496	0.111(1066)	0.147(103)	0.133(2312)	non tumor-specific	exon_skip	yes
CCDC197_LS004	chr14:93997571|93997999:+	CCDC197	coiled-coil domain containing 197	protein coding gene	no	ENST00000359253.2;ENST00000636493.1	0.953	0.000	0.655	0(2)	0(0)	0.011(184)	non tumor-specific	nAS	yes
UN_KIN_LS0008	chr10:7769345|7778838:-	KIN	Kin17 DNA and RNA binding protein	protein coding gene	no	.	2.590	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	exon_skip	no
RCE1_LS001	chr11:66843640|66843759:+	RCE1	symbol withdrawn, see [HGNC:13721](/data/gene-symbol-report/#!/hgnc_id/HGNC:13721)	protein coding gene	no	ENST00000309657.7;ENST00000524506.5;ENST00000524849.5;ENST00000530610.1;ENST00000534822.1	6.922	3.688	14.660	0.984(9425)	0.974(684)	0.977(16988)	non tumor-specific	intron_retention	yes
ARFGAP3_LS012	chr22:42831636|42834242:-	ARFGAP3	ADP ribosylation factor GTPase activating protein 3	protein coding gene	no	ENST00000263245.9;ENST00000437119.6	66.746	54.960	38.566	0.981(9403)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
MIS18BP1_LS011	chr14:45226836|45227663:-	MIS18BP1	MIS18 binding protein 1	protein coding gene	no	ENST00000310806.8;ENST00000454990.5	21.309	7.976	6.785	0.88(8428)	0.917(644)	0.935(16248)	non tumor-specific	exon_skip	yes
IPO11_LS014	chr5:62474464|62476683:+	IPO11	importin 11	protein coding gene	no	ENST00000424533.5;ENST00000325324.10;ENST00000409296.7	11.403	7.720	6.009	0.843(8074)	0.932(654)	0.937(16279)	non tumor-specific	nAS	yes
IST1_LS034	chr16:71923380|71924769:+	IST1	IST1 factor associated with ESCRT-III	protein coding gene	yes	ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6;ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6;ENST00000544564.5;ENST00000541571.6;ENST00000535424.5;ENST00000378799.10;ENST00000606369.5;ENST00000538565.5;ENST00000538850.5;ENST00000439924.6	87.232	56.643	76.678	0.995(9533)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
HMCN1_LS098	chr1:186152871|186153750:+	HMCN1	hemicentin 1	protein coding gene	no	ENST00000271588.8	8.988	4.879	4.766	0.469(4493)	0.684(480)	0.789(13718)	non tumor-specific	nAS	yes
UN_CSDE1_LS0064	chr1:114749904|114750149:-	CSDE1	cold shock domain containing E1	protein coding gene	no	.	9.504	1.436	0.000	0.011(101)	0.007(5)	0(0)	non tumor-specific	exon_skip;intron_retention;mutex_exons	no
UN_RPSAP68_UP_LS0534	chr21:8401280|8445322:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	244.061	14.320	0.000	0.003(27)	0.004(3)	0(0)	non tumor-specific	nAS	no
ADAM9_LS028	chr8:39083073|39091259:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000481873.7	0.309	0.366	0.848	0.216(2071)	0.168(118)	0.313(5433)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_DEAF1_LS0042	chr11:688049|688331:-	DEAF1	DEAF1 transcription factor	protein coding gene	no	.	13.994	0.413	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
DOCK1_LS032	chr10:127339084|127343646:+	DOCK1	dedicator of cytokinesis 1	protein coding gene	no	ENST00000280333.9;ENST00000623213.1;ENST00000484400.5	19.858	19.921	30.306	0.96(9197)	0.987(693)	0.941(16354)	non tumor-specific	exon_skip	yes
UN_MDM4_LS0026	chr1:204549162|204549266:+	MDM4	MDM4 regulator of p53	protein coding gene	yes	.	2.774	0.246	0.000	0.01(97)	0.01(7)	0(0)	non tumor-specific	intron_retention	no
CNTRL_LS037	chr9:121160302|121161283:+	CNTRL	centriolin	protein coding gene	no	ENST00000373844.1;ENST00000491018.1	0.522	0.267	1.409	0.661(6332)	0.679(477)	0.68(11828)	non tumor-specific	nAS	yes
UN_AL669831.1_LS0022	chr1:727207|727305:-	AL669831.1	-	pseudogene	no	.	6.407	2.573	0.000	0.014(135)	0.004(3)	0(0)	non tumor-specific	nAS	no
WBP2_LS027	chr17:75851676|75855124:-	WBP2	WW domain binding protein 2	protein coding gene	no	ENST00000593002.1	0.014	0.569	1.027	0.85(8147)	0.89(625)	0.477(8287)	non tumor-specific	alt_5prime;exon_skip	yes
UN_TRGC2_LS0011	chr7:38245230|38247514:-	TRGC2	T cell receptor gamma constant 2	no	no	.	5.066	0.172	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC016924.1_UP_LS0002	chr3:126214861|126215358:+	AC016924.1	-	lncRNA gene	no	.	2.067	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RECQL5_LS0066	chr17:75638870|75639127:+	RECQL5	RecQ like helicase 5	protein coding gene	no	.	2.850	0.534	0.000	0.006(61)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_LINC00845_UP_LS0002	chr10:60734428|60784705:+	LINC00845	long intergenic non-protein coding RNA 845	lncRNA gene	no	.	0.736	0.724	0.000	0.003(33)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_TRUB1_LS0003	chr10:114938539|114951094:+	TRUB1	TruB pseudouridine synthase family member 1	protein coding gene	no	.	5.274	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
ZNF827_LS032	chr4:145903215|145938365:-	ZNF827	zinc finger protein 827	protein coding gene	no	ENST00000508784.5;ENST00000379448.8	3.984	2.180	2.828	0.749(7177)	0.843(592)	0.863(14998)	non tumor-specific	exon_skip	yes
ANGEL2_LS017	chr1:213008466|213015613:-	ANGEL2	angel homolog 2	protein coding gene	no	ENST00000360506.6;ENST00000360506.6	0.445	0.273	1.347	0.689(6597)	0.695(488)	0.689(11976)	non tumor-specific	alt_5prime;exon_skip	yes
AC009119.2_LS002	chr16:83912367|83948211:+	AC009119.2	-	protein coding gene	no	ENST00000566309.2	3.245	1.352	0.939	0.05(477)	0.134(94)	0.412(7166)	non tumor-specific	exon_skip	yes
TCF7_LS011	chr5:134123756|134138059:+	TCF7	transcription factor 7	protein coding gene	no	ENST00000519037.5	0.009	0.020	0.724	0.211(2017)	0.207(145)	0.014(245)	non tumor-specific	nAS	yes
UN_RAB4A_LS0009	chr1:229299072|229303806:+	RAB4A	RAB4A, member RAS oncogene family	protein coding gene	no	.	6.105	1.310	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
TGFBR3_LS015	chr1:91734959|91758613:-	TGFBR3	transforming growth factor beta receptor 3	protein coding gene	yes	ENST00000212355.8;ENST00000370399.6;ENST00000525962.5;ENST00000532540.5;ENST00000465892.6;ENST00000468996.2	7.281	20.882	12.429	0.712(6826)	0.962(675)	0.91(15818)	non tumor-specific	exon_skip	yes
PILRB_LS024	chr7:100355240|100356394:+	PILRB	paired immunoglobin like type 2 receptor beta	protein coding gene	no	ENST00000448382.5;ENST00000455145.5	0.942	0.246	8.295	0.844(8087)	0.707(496)	0.958(16653)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
PRICKLE3_LS004	chrX:49178179|49178272:-	PRICKLE3	prickle planar cell polarity protein 3	protein coding gene	no	ENST00000540849.5;ENST00000599218.5;ENST00000453382.5;ENST00000432913.5	20.611	7.964	10.550	0.951(9109)	0.99(695)	0.965(16777)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
ALS2_LS037	chr2:201761818|201767229:-	ALS2	alsin Rho guanine nucleotide exchange factor ALS2	protein coding gene	no	ENST00000264276.10;ENST00000482891.5;ENST00000482789.5;ENST00000467448.5;ENST00000409632.6;ENST00000410052.1	12.013	8.698	7.928	0.936(8967)	0.984(691)	0.957(16630)	non tumor-specific	exon_skip	yes
CDH8_LS010	chr16:61713958|61727094:-	CDH8	cadherin 8	protein coding gene	no	ENST00000577730.5;ENST00000577390.5;ENST00000299345.10	0.772	1.722	1.905	0.1(954)	0.057(40)	0.222(3866)	non tumor-specific	exon_skip	yes
UN_UGDH-AS1_LS0023	chr4:39535187|39565959:-	UGDH-AS1	UGDH antisense RNA 1	lncRNA gene	no	.	2.428	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
MRTO4_LS005	chr1:19256051|19257064:+	MRTO4	MRT4 homolog, ribosome maturation factor	protein coding gene	no	ENST00000330263.4	127.813	54.130	44.126	0.999(9569)	0.996(699)	0.979(17018)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_FRMD4A_LS0057	chr10:13727865|13729286:+	FRMD4A	FERM domain containing 4A	protein coding gene	no	.	2.966	1.096	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
C1orf53_LS001	chr1:197902850|197905796:+	C1orf53	chromosome 1 open reading frame 53	protein coding gene	no	ENST00000436652.1	0.838	0.400	0.692	0.665(6374)	0.654(459)	0.097(1684)	non tumor-specific	alt_5prime	yes
CDH19_LS003	chr18:66509218|66511568:-	CDH19	cadherin 19	protein coding gene	no	ENST00000579658.5	0.244	0.277	1.848	0.08(763)	0.081(57)	0.455(7905)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CST6_LS0006	chr11:66012951|66013320:+	CST6	cystatin B	protein coding gene	yes	.	70.468	2.512	0.000	0.016(158)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL021154.1_UP_LS0005	chr1:23552073|23554415:-	AL021154.1	-	lncRNA gene	no	.	1.553	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
NF1P8_LS003	chr2:131191783|131193201:-	NF1P8	neurofibromin 1 pseudogene 8	pseudogene	no	ENST00000415351.2	8.648	0.000	0.795	0.021(198)	0(0)	0.009(163)	non tumor-specific	nAS	yes
CLEC18A_LS006	chr16:69952126|69958942:+	CLEC18A	C-type lectin domain family 18 member A	protein coding gene	no	ENST00000561889.1	0.519	0.055	0.724	0.213(2036)	0.191(134)	0.001(12)	non tumor-specific	nAS	yes
UN_ST6GALNAC2_LS0020	chr17:76572802|76573195:-	ST6GALNAC2	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein coding gene	no	.	5.579	2.214	0.000	0.158(1517)	0.255(179)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SUSD3_LS0038	chr9:93079602|93081338:+	SUSD3	sushi domain containing 3	protein coding gene	no	.	2.333	0.874	0.000	0.015(143)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
PABPC1L_LS031	chr20:44933185|44935391:+	PABPC1L	poly(A) binding protein cytoplasmic 1 like	protein coding gene	no	ENST00000255136.7;ENST00000537323.5;ENST00000217073.6;ENST00000476056.5;ENST00000372824.5;ENST00000372819.5;ENST00000217075.6;ENST00000479873.5;ENST00000465761.1;ENST00000372826.6	21.914	5.001	22.734	0.978(9372)	0.919(645)	0.973(16911)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
ALPK2_LS015	chr18:58538224|58578814:-	ALPK2	alpha kinase 2	protein coding gene	no	ENST00000361673.3	3.359	1.967	4.586	0.102(979)	0.207(145)	0.22(3817)	non tumor-specific	exon_skip	yes
RYR3_LS089	chr15:33821602|33822996:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000635790.1;ENST00000558060.1	0.903	0.868	3.914	0.123(1176)	0.286(201)	0.706(12279)	non tumor-specific	nAS	yes
UN_RNU6-70P_UP_LS0008	chr13:27371937|27372728:-	RNU6-70P	RNA, U6 small nuclear 70, pseudogene	small non-coding RNA gene	no	.	9.232	1.078	0.000	0.004(36)	0.019(13)	0(0)	non tumor-specific	nAS	no
KANK2_LS020	chr19:11194590|11195622:-	KANK2	KN motif and ankyrin repeat domains 2	protein coding gene	no	ENST00000586659.5;ENST00000592215.1	3.568	5.464	16.239	0.913(8751)	0.98(688)	0.94(16345)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_KANK1_LS0077	chr9:538601|539516:+	KANK1	KN motif and ankyrin repeat domains 1	protein coding gene	yes	.	0.797	0.147	0.000	0.005(51)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZSWIM7_LS0017	chr17:15997148|15999519:-	ZSWIM7	zinc finger SWIM-type containing 7	protein coding gene	no	.	0.727	0.068	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
COX7A1_LS004	chr19:36151755|36151904:-	COX7A1	cytochrome c oxidase subunit 7A1	protein coding gene	no	ENST00000437291.6	0.260	0.343	1.126	0.698(6688)	0.875(614)	0.395(6873)	non tumor-specific	exon_skip;intron_retention	yes
UN_MT-RNR1_LS0009	chrM:1203|1254:-	MT-RNR1	mitochondrially encoded 12S rRNA	small non-coding RNA gene	no	.	204.103	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
AFF1_LS022	chr4:87115299|87125037:+	AFF1	AF4/FMR2 family member 1	protein coding gene	yes	ENST00000395146.8;ENST00000307808.10;ENST00000544085.5;ENST00000503369.1	20.130	24.051	19.838	0.956(9158)	0.99(695)	0.971(16881)	non tumor-specific	nAS	yes
UN_STPG1_LS0017	chr1:24379823|24380122:-	STPG1	sperm tail PG-rich repeat containing 1	protein coding gene	no	.	3.279	0.801	0.000	0.02(187)	0.01(7)	0(0)	non tumor-specific	alt_5prime	no
UN_MYO7B_LS0008	chr2:127584332|127584785:+	MYO7B	myosin VIIB	protein coding gene	no	.	7.907	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AR_LS018	chrX:67722172|67722827:+	AR	androgen receptor	protein coding gene	yes	ENST00000612452.4	0.652	0.221	0.552	0.012(116)	0.024(17)	0(5)	non tumor-specific	nAS	yes
UN_AL451164.1_UP_LS0018	chr10:3395296|3397701:-	AL451164.1	-	lncRNA gene	no	.	1.981	0.087	0.000	0.009(86)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TPST2_LS0052	chr22:26561056|26561123:+	TPST2	tyrosylprotein sulfotransferase 2	protein coding gene	no	.	16.507	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC005332.7_UP_LS0033	chr17:68183499|68186737:+	AC005332.7	-	lncRNA gene	no	.	2.273	0.542	0.000	0.011(109)	0.014(10)	0(0)	non tumor-specific	nAS	no
UN_INTS10_UP_LS0001	chr8:19765030|19767579:+	INTS10	integrator complex subunit 10	protein coding gene	no	.	2.280	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
NIT1_LS018	chr1:161118239|161118786:+	NIT1	nitrilase 1	protein coding gene	no	ENST00000478277.5;ENST00000478277.5	1.281	1.682	1.389	0.87(8334)	0.913(641)	0.722(12557)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC00630_LS006	chrX:102817082|102826969:+	LINC00630	long intergenic non-protein coding RNA 630	lncRNA gene	no	ENST00000440496.5	0.242	0.084	1.114	0.279(2672)	0.343(241)	0.533(9258)	non tumor-specific	nAS	yes
AL359094.1_LS006	chr10:127000992|127001555:-	AL359094.1	-	lncRNA gene	no	ENST00000601242.5;ENST00000594614.5;ENST00000595456.5	1.096	0.000	0.656	0(3)	0(0)	0.001(18)	non tumor-specific	nAS	yes
ILF3_LS010	chr19:10671133|10678653:+	ILF3	interleukin enhancer binding factor 3	protein coding gene	no	ENST00000587840.5	0.331	0.301	2.357	0.867(8302)	0.866(608)	0.872(15151)	non tumor-specific	nAS	yes
CDYL_LS018	chr6:4952409|4953898:+	CDYL	chromodomain Y like	protein coding gene	no	ENST00000328908.9;ENST00000397588.7;ENST00000472453.5;ENST00000449732.6;ENST00000343762.5	45.647	22.446	18.908	0.938(8989)	0.934(656)	0.979(17013)	non tumor-specific	alt_5prime;exon_skip	yes
SYTL3_LS021	chr6:158760745|158762076:+	SYTL3	synaptotagmin like 3	protein coding gene	no	ENST00000367081.7;ENST00000360448.7;ENST00000611299.4;ENST00000297239.10	12.246	10.122	10.252	0.876(8394)	0.944(663)	0.954(16587)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_PPIAP48_UP_LS0011	chr16:64709101|64720715:+	PPIAP48	peptidylprolyl isomerase A pseudogene 48	pseudogene	no	.	1.242	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
KIAA1109_LS064	chr4:122304983|122305877:+	KIAA1109	KIAA1109	protein coding gene	no	ENST00000264501.8;ENST00000388738.7;ENST00000419325.5	7.860	6.619	14.372	0.547(5243)	0.811(569)	0.969(16839)	non tumor-specific	alt_3prime	yes
FAM178B_LS006	chr2:96894051|96902620:-	FAM178B	family with sequence similarity 178 member B	protein coding gene	no	ENST00000490605.2	6.982	2.510	3.075	0.218(2091)	0.234(164)	0.672(11688)	non tumor-specific	exon_skip	yes
UN_CDC42EP3_LS0012	chr2:37671931|37672085:-	CDC42EP3	CDC42 effector protein 3	protein coding gene	no	.	0.809	0.364	0.000	0.017(161)	0.019(13)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
UN_AL391832.2_LS0019	chr1:234961566|234962080:-	AL391832.2	-	lncRNA gene	no	.	1.981	0.161	0.000	0.02(196)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_MSTO2P_LS0032	chr1:155749631|155749898:+	MSTO2P	misato family member 2, pseudogene	pseudogene	no	.	4.197	0.298	0.000	0.029(280)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_SNRPCP10_UP_LS0006	chr3:75502439|75506085:+	SNRPCP10	small nuclear ribonucleoprotein polypeptide C pseudogene 10	pseudogene	no	.	1.125	0.123	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_EHMT2_LS0045	chr6:31885011|31886581:-	EHMT2	euchromatic histone lysine methyltransferase 2	protein coding gene	no	.	11.320	1.263	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
TRIM31_LS005	chr6:30104167|30105168:-	TRIM31	tripartite motif containing 31	protein coding gene	yes	ENST00000471695.1;ENST00000376734.3;ENST00000468264.1;ENST00000484583.1;ENST00000471695.1;ENST00000376734.3;ENST00000468264.1;ENST00000484583.1	10.616	12.159	2.276	0.372(3566)	0.288(202)	0.085(1483)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
LINC01090_LS006	chr2:188187053|188189070:-	LINC01090	long intergenic non-protein coding RNA 1090	lncRNA gene	no	ENST00000632331.1	2.063	0.000	0.940	0(2)	0(0)	0.027(467)	non tumor-specific	nAS	yes
GLS_LS008	chr2:190902026|190905004:+	GLS	glutaminase 2	protein coding gene	no	ENST00000320717.7;ENST00000338435.8;ENST00000469774.1;ENST00000417154.5	51.671	61.176	43.085	0.969(9281)	0.981(689)	0.978(17004)	non tumor-specific	exon_skip	yes
KBTBD11-OT1_LS003	chr8:1771597|1843353:+	KBTBD11-OT1	KBTBD11 overlapping transcript 1	lncRNA gene	no	ENST00000635855.1;ENST00000636175.1	0.552	0.000	0.694	0.001(9)	0(0)	0.155(2688)	non tumor-specific	nAS	yes
NME4_LS032	chr16:405024|406346:+	NME4	NME/NM23 nucleoside diphosphate kinase 4	protein coding gene	no	ENST00000444498.5	16.585	13.823	15.171	0.986(9449)	0.993(697)	0.976(16965)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_CES1_LS0012	chr16:55816962|55820372:-	CES1	carboxylesterase 1	protein coding gene	no	.	153.027	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MARCO_LS013	chr2:118981507|118981621:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	ENST00000327097.4	12.724	59.179	5.185	0.583(5582)	0.695(488)	0.769(13361)	non tumor-specific	nAS	yes
GTPBP3_LS001	chr19:17335111|17338008:+	GTPBP3	GTP binding protein 3, mitochondrial	protein coding gene	no	ENST00000601213.5	0.263	0.033	0.630	0.014(135)	0.004(3)	0.03(522)	non tumor-specific	nAS	yes
USP6NL_LS013	chr10:11527567|11532178:-	USP6NL	USP6 N-terminal like	protein coding gene	no	ENST00000277575.5	0.330	0.253	0.980	0.108(1037)	0.194(136)	0.158(2744)	non tumor-specific	nAS	yes
UN_ELOCP20_UP_LS0024	chr1:115539520|115541131:+	ELOCP20	elongin C pseudogene 20	pseudogene	no	.	0.991	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
INPP5K_LS018	chr17:1509799|1516456:-	INPP5K	inositol polyphosphate-5-phosphatase K	protein coding gene	no	ENST00000350761.9	0.018	0.038	0.701	0.056(541)	0.056(39)	0.096(1674)	non tumor-specific	exon_skip	yes
UN_MST1_LS0005	chr3:49684487|49684550:-	MST1	serine/threonine kinase 4	protein coding gene	yes	.	23.990	8.124	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
UN_AC000035.1_UP_LS0010	chr22:29502546|29511106:-	AC000035.1	-	lncRNA gene	no	.	2.396	0.072	0.000	0.023(224)	0.016(11)	0(0)	non tumor-specific	nAS	no
ST8SIA1_LS001	chr12:22063927|22066345:-	ST8SIA1	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein coding gene	no	ENST00000536535.1	0.836	0.310	1.283	0.087(831)	0.118(83)	0.377(6547)	non tumor-specific	nAS	yes
DPY19L2_LS025	chr12:63661481|63663758:-	DPY19L2	dpy-19 like 2	protein coding gene	no	ENST00000324472.8;ENST00000536494.5;ENST00000538147.1	3.033	1.722	4.176	0.266(2551)	0.47(330)	0.791(13750)	non tumor-specific	exon_skip	yes
CAPN15_LS010	chr16:533998|547559:+	CAPN15	calpain 15	protein coding gene	no	ENST00000568988.5	0.563	0.346	0.657	0.444(4254)	0.34(239)	0.089(1553)	non tumor-specific	exon_skip	yes
UN_ATP9A_LS0006	chr20:51598053|51598094:-	ATP9A	ATPase phospholipid transporting 9A (putative)	protein coding gene	no	.	16.262	2.101	0.000	0.005(47)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
IKZF3_LS007	chr17:39777767|39777885:-	IKZF3	IKAROS family zinc finger 3	protein coding gene	yes	ENST00000623724.3;ENST00000348427.7;ENST00000293068.9;ENST00000583368.1	1.018	0.492	1.109	0.374(3586)	0.484(340)	0.302(5256)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_CDH23_LS0134	chr10:71812362|71812480:+	CDH23	cadherin related 23	protein coding gene	no	.	2.422	0.280	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
TMEM72-AS1_LS001	chr10:44812183|44823190:-	TMEM72-AS1	TMEM72 antisense RNA 1	lncRNA gene	no	ENST00000450287.2	0.406	1.669	0.816	0(2)	0.001(1)	0.074(1284)	non tumor-specific	nAS	yes
BPIFA3_LS002	chr20:33223961|33224355:+	BPIFA3	BPI fold containing family A member 3	protein coding gene	no	ENST00000490499.5;ENST00000471233.1;ENST00000375454.7	10.525	0.000	0.709	0(2)	0(0)	0.024(414)	non tumor-specific	exon_skip	yes
UN_AC004980.4_UP_LS0001	chr7:76504445|76510903:+	AC004980.4	-	pseudogene	no	.	3.784	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004034.1_UP_LS0004	chr16:2954526|2955130:-	AC004034.1	-	lncRNA gene	no	.	2.557	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
NUP107_LS015	chr12:68702784|68709238:+	NUP107	nucleoporin 107	protein coding gene	no	ENST00000229179.8;ENST00000378905.6;ENST00000537598.5;ENST00000535718.5;ENST00000539906.5	33.524	12.866	14.325	0.963(9226)	0.984(691)	0.973(16909)	non tumor-specific	exon_skip	yes
UN_CALR_LS0084	chr19:12943802|12943857:+	CALR	calreticulin	protein coding gene	no	.	381.398	98.386	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
UN_IVD_LS0066	chr15:40419684|40419979:-	IVD	isovaleryl-CoA dehydrogenase	protein coding gene	no	.	4.888	0.567	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADAMTS19_LS017	chr5:129658737|129665499:+	ADAMTS19	ADAM metallopeptidase with thrombospondin type 1 motif 19	protein coding gene	no	ENST00000274487.8;ENST00000638972.1	4.786	1.006	1.254	0.082(781)	0.095(67)	0.269(4672)	non tumor-specific	nAS	yes
RAPGEF6_LS029	chr5:131505522|131508071:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000509018.5;ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000512052.5;ENST00000308008.10;ENST00000515170.5;ENST00000510071.5;ENST00000514179.5;ENST00000513227.5	4.880	2.822	2.620	0.623(5970)	0.792(556)	0.857(14903)	non tumor-specific	nAS	yes
MUC4_LS292	chr3:195784153|195784490:-	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.;.	5.395	1.446	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_IL16_LS0016	chr15:81266801|81269538:+	IL16	interleukin 16	protein coding gene	no	.	5.540	0.548	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_SNORA48B_UP_LS0016	chrX:3602835|3604595:-	SNORA48B	small nucleolar RNA, H/ACA box 48B	small non-coding RNA gene	no	.	1.779	0.775	0.000	0.003(27)	0.01(7)	0(0)	non tumor-specific	nAS	no
CDT1_LS006	chr16:88806121|88806486:+	CDT1	chromatin licensing and DNA replication factor 1	protein coding gene	no	ENST00000301019.8;ENST00000569140.1	53.883	6.045	2.894	0.972(9316)	0.681(478)	0.75(13032)	non tumor-specific	nAS	yes
PIGC_LS011	chr1:172399916|172415294:-	PIGC	phosphatidylinositol glycan anchor biosynthesis class C	protein coding gene	no	ENST00000489002.5;ENST00000475059.5;ENST00000484368.1	0.683	0.808	1.760	0.567(5436)	0.671(471)	0.776(13489)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
PLXNC1_LS015	chr12:94248106|94248227:+	PLXNC1	plexin C1	protein coding gene	yes	ENST00000258526.8	12.422	4.373	3.032	0.619(5926)	0.668(469)	0.83(14423)	non tumor-specific	nAS	yes
AC006378.1_LS001	chr7:93969666|93987141:+	AC006378.1	-	lncRNA gene	no	ENST00000426193.6;ENST00000426634.1	3.402	1.164	0.706	0(1)	0.001(1)	0.016(270)	non tumor-specific	nAS	yes
UN_HNRNPF_LS0064	chr10:43397348|43407717:-	HNRNPF	heterogeneous nuclear ribonucleoprotein F	protein coding gene	no	.	0.345	1.851	0.000	0.001(12)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_SNED1_LS0080	chr2:241085375|241089188:-	SNED1	sushi, nidogen and EGF like domains 1	protein coding gene	no	.	0.740	0.598	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
GOLGA8A_LS007	chr15:34383528|34383746:-	GOLGA8A	golgin A8 family member A	protein coding gene	no	ENST00000473125.5;ENST00000432566.6;ENST00000359187.4	31.363	14.942	1.487	0.925(8864)	0.909(638)	0.653(11352)	non tumor-specific	alt_3prime	yes
INPP1_LS021	chr2:190360306|190362627:+	INPP1	inositol polyphosphate-1-phosphatase	protein coding gene	no	ENST00000392329.6;ENST00000322522.8;ENST00000413239.5;ENST00000431594.5;ENST00000444194.5;ENST00000422454.5;ENST00000458647.5;ENST00000423767.5;ENST00000409027.1;ENST00000487628.1	25.257	20.472	35.598	0.986(9446)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
TRAV35_LS001	chr14:22221941|22222192:+	TRAV35	T cell receptor alpha variable 35	no	no	ENST00000390462.1	0.520	0.211	0.905	0.276(2647)	0.313(220)	0.102(1777)	non tumor-specific	nAS	yes
REXO2_LS004	chr11:114439787|114440656:+	REXO2	RNA exonuclease 2	protein coding gene	no	ENST00000542186.1	0.044	0.036	0.628	0.796(7629)	0.832(584)	0.024(422)	non tumor-specific	nAS	yes
LARP1B_LS021	chr4:128162317|128178512:+	LARP1B	La ribonucleoprotein 1B	protein coding gene	no	.;.	3.557	2.099	0.000	0.077(734)	0.127(89)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
DMBT1_LS024	chr10:122590694|122591479:+	DMBT1	deleted in malignant brain tumors 1	protein coding gene	yes	ENST00000338354.8;ENST00000344338.7;ENST00000368955.7;ENST00000368909.7;ENST00000619379.1	18.727	83.259	1.571	0.173(1653)	0.282(198)	0.141(2449)	non tumor-specific	exon_skip;mutex_exons	yes
UN_RNF180_LS0017	chr5:64330406|64330569:+	RNF180	ring finger protein 180	protein coding gene	yes	.	1.063	0.778	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AC011447.3_LS0132	chr19:20244450|20247594:+	AC011447.3	-	lncRNA gene	no	.	1.954	0.120	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_DAXX_LS0014	chr6:33319798|33320078:+	DAXX	death domain associated protein	protein coding gene	yes	.	0.797	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AQR_LS0019	chr15:34874864|34882502:-	AQR	aquarius intron-binding spliceosomal factor	protein coding gene	no	.	0.956	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	exon_skip	no
AC105036.3_LS002	chr15:75527261|75597340:-	AC105036.3	-	lncRNA gene	no	ENST00000565138.5	0.313	0.189	0.648	0.531(5089)	0.588(413)	0.014(247)	non tumor-specific	nAS	yes
WDR54_LS012	chr2:74423385|74423855:+	WDR54	WD repeat domain 54	protein coding gene	no	ENST00000426787.5	0.050	0.049	1.124	0.702(6724)	0.588(413)	0.499(8667)	non tumor-specific	exon_skip;intron_retention	yes
AL009178.3_LS003	chr6:167823278|167824542:+	AL009178.3	-	lncRNA gene	no	ENST00000645341.1	1.974	0.074	0.000	0.031(297)	0.001(1)	0(0)	non tumor-specific	nAS	yes
DNASE1L1_LS005	chrX:154403381|154403522:-	DNASE1L1	deoxyribonuclease 1 like 1	protein coding gene	no	ENST00000393638.5;ENST00000369809.5;ENST00000369807.5;ENST00000369808.7;ENST00000014935.7;ENST00000309585.9;ENST00000497242.1;ENST00000451865.5	48.195	26.186	44.539	0.995(9532)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
MMEL1_LS032	chr1:2611340|2612127:-	MMEL1	membrane metalloendopeptidase like 1	protein coding gene	no	ENST00000378412.7;ENST00000502556.5;ENST00000504800.5	1.798	0.815	0.830	0.029(279)	0.01(7)	0.032(554)	non tumor-specific	exon_skip	yes
HJURP_LS018	chr2:233853910|233854384:-	HJURP	Holliday junction recognition protein	protein coding gene	no	ENST00000441687.5;ENST00000432087.5;ENST00000411486.6;ENST00000414924.5;ENST00000454020.1;ENST00000453122.1	8.764	1.230	1.447	0.778(7452)	0.271(190)	0.347(6026)	non tumor-specific	exon_skip;mutex_exons	yes
FAM135A_LS027	chr6:70522586|70524343:+	FAM135A	family with sequence similarity 135 member A	protein coding gene	no	.;.	1.303	0.109	0.000	0.012(113)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
IGSF9_LS020	chr1:159934284|159934425:-	IGSF9	immunoglobulin superfamily member 9	protein coding gene	no	ENST00000361509.7	1.869	1.536	2.217	0.561(5377)	0.56(393)	0.263(4565)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
KIF1BP_LS006	chr10:68999814|69000424:+	KIF1BP	kinesin family binding protein	protein coding gene	no	ENST00000637323.1	1.626	0.000	0.632	0(1)	0(0)	0.054(931)	non tumor-specific	nAS	yes
UN_USP15_LS0035	chr12:62391429|62391793:+	USP15	ubiquitin specific peptidase 15	protein coding gene	no	.	7.517	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
RCN3_LS011	chr19:49537205|49546821:+	RCN3	reticulocalbin 3	protein coding gene	no	ENST00000598833.1	0.133	0.085	0.667	0.114(1094)	0.056(39)	0.058(1011)	non tumor-specific	exon_skip	yes
KIAA0895L_LS009	chr16:67178504|67179402:-	KIAA0895L	KIAA0895 like	protein coding gene	no	ENST00000570009.1	0.122	0.104	0.904	0.422(4042)	0.295(207)	0.432(7504)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_LINC01010_UP_LS0009	chr6:134393296|134397710:+	LINC01010	long intergenic non-protein coding RNA 1010	lncRNA gene	no	.	2.516	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SNRPD1_LS003	chr18:21612443|21623871:+	SNRPD1	small nuclear ribonucleoprotein D2 polypeptide	protein coding gene	no	.;.;.	12.830	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_HLA-B_LS0376	chr6:31354531|31354639:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	1.105	0.357	0.000	0.009(88)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MKNK2_LS0078	chr19:2038993|2039076:+	MKNK2	MAPK interacting serine/threonine kinase 2	protein coding gene	no	.	2.667	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TEX53_LS001	chr9:114656607|114662275:-	TEX53	testis expressed 53	protein coding gene	no	ENST00000415101.1	1.070	0.001	1.070	0.001(12)	0.001(1)	0(2)	non tumor-specific	nAS	yes
UN_PLD3_LS0168	chr19:40378242|40378409:-	PLD3	phospholipase D family member 3	protein coding gene	no	.	24.824	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
MPV17_LS038	chr2:27322522|27323052:-	MPV17	mitochondrial inner membrane protein MPV17	protein coding gene	no	ENST00000402310.5;ENST00000380044.5;ENST00000402722.5;ENST00000426513.6;ENST00000405983.5;ENST00000405076.5;ENST00000621183.4;ENST00000415514.5;ENST00000403262.6;ENST00000617583.4;ENST00000428910.5;ENST00000621470.4;ENST00000622003.4;ENST00000399052.8;ENST00000486898.1;ENST00000494436.1	26.738	15.889	36.781	0.979(9379)	0.984(691)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CA1_LS005	chr8:85332552|85333525:-	CA1	carbonic anhydrase 1	protein coding gene	no	ENST00000523953.5;ENST00000542576.5;ENST00000431316.3;ENST00000523022.5;ENST00000521679.5;ENST00000524324.5;ENST00000517618.5;ENST00000519991.5;ENST00000523712.5;ENST00000520663.5;ENST00000517590.5;ENST00000518233.5;ENST00000517429.5	6.396	319.363	1.636	0.115(1103)	0.219(154)	0.486(8440)	non tumor-specific	exon_skip	yes
DNAJC13_LS008	chr3:132453694|132454066:+	DNAJC13	DnaJ heat shock protein family (Hsp40) member C13	protein coding gene	no	ENST00000260818.10;ENST00000650455.1;ENST00000486798.5	12.114	9.347	8.182	0.775(7425)	0.905(635)	0.951(16538)	non tumor-specific	exon_skip	yes
UN_ABL2_LS0029	chr1:179133374|179229589:-	ABL2	ABL proto-oncogene 2, non-receptor tyrosine kinase	protein coding gene	yes	.	0.510	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_ZNF33B_LS0019	chr10:42593379|42593464:+	ZNF33B	zinc finger protein 33B	protein coding gene	no	.	2.143	0.441	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYO1B_LS006	chr2:191246367|191276887:+	MYO1B	myosin IB	protein coding gene	no	ENST00000438652.5;ENST00000438652.5	0.061	0.012	0.650	0.332(3182)	0.416(292)	0.049(855)	non tumor-specific	alt_5prime;exon_skip	yes
CNPPD1_LS003	chr2:219174207|219174778:-	CNPPD1	cyclin Pas1/PHO80 domain containing 1	protein coding gene	no	ENST00000360507.9;ENST00000409789.5;ENST00000453038.5;ENST00000451647.1	120.358	90.383	91.029	0.997(9549)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HLA-B_LS0145	chr6:31271136|31355546:-	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	564.562	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
GLP2R_LS013	chr17:9862090|9870747:+	GLP2R	glucagon like peptide 2 receptor	protein coding gene	no	ENST00000574745.5;ENST00000262441.9	3.528	3.582	2.375	0.059(563)	0.259(182)	0.4(6946)	non tumor-specific	nAS	yes
TBR1_LS003	chr2:161418087|161418201:+	TBR1	T-box brain transcription factor 1	protein coding gene	no	ENST00000410035.1	0.191	0.026	0.845	0.022(209)	0.009(6)	0.006(102)	non tumor-specific	nAS	yes
UN_TUFM_LS0020	chr16:28843124|28844468:+	TUFM	Tu translation elongation factor, mitochondrial	protein coding gene	no	.	4.413	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MCM7_LS0027	chr7:100095470|100095739:-	MCM7	minichromosome maintenance complex component 7	protein coding gene	no	.	58.028	2.455	0.000	0.004(40)	0.003(2)	0(0)	non tumor-specific	alt_5prime	no
SLC43A3_LS002	chr11:57409298|57409935:-	SLC43A3	solute carrier family 43 member 3	protein coding gene	no	ENST00000395123.6;ENST00000395124.5;ENST00000352187.5;ENST00000529554.5;ENST00000533524.5	86.405	49.161	59.510	0.985(9441)	0.997(700)	0.979(17016)	non tumor-specific	exon_skip	yes
UN_AL078590.3_LS0001	chr6:134521143|134523332:-	AL078590.3	-	lncRNA gene	no	.	1.630	0.171	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AL627171.1_UP_LS0059	chr14:49853912|49862579:+	AL627171.1	-	lncRNA gene	no	.	6.118	0.533	0.000	0.029(279)	0.019(13)	0(0)	non tumor-specific	nAS	no
ITIH4_LS033	chr3:52826953|52827093:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000491663.5;ENST00000537897.5	29.502	129.390	12.576	0.473(4536)	0.541(380)	0.966(16796)	non tumor-specific	nAS	yes
FBXL13_LS018	chr7:102913215|102926274:-	FBXL13	F-box and leucine rich repeat protein 13	protein coding gene	yes	ENST00000379305.7;ENST00000448002.6;ENST00000436908.5;ENST00000313221.8;ENST00000456695.5;ENST00000379308.7;ENST00000455112.6;ENST00000477915.5	2.404	1.236	1.116	0.127(1216)	0.114(80)	0.473(8217)	non tumor-specific	nAS	yes
ZNF816_LS011	chr19:52956265|52962727:-	ZNF816	zinc finger protein 816	protein coding gene	no	ENST00000332302.8	0.119	0.001	0.623	0.009(91)	0.007(5)	0.003(46)	non tumor-specific	nAS	yes
UN_CASP3_LS0006	chr4:184635414|184638401:-	CASP3	caspase 3	protein coding gene	no	.	3.141	0.301	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_GRSF1_LS0032	chr4:70839592|70839614:+	GRSF1	G-rich RNA sequence binding factor 1	protein coding gene	no	.	2.026	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NEURL1B_LS0007	chr5:172656641|172656698:-	NEURL1B	neuralized E3 ubiquitin protein ligase 1B	protein coding gene	no	.	34.129	12.916	0.000	0.094(904)	0.127(89)	0(0)	non tumor-specific	nAS	no
ENPP7P10_LS001	chr4:9079180|9131465:+	ENPP7P10	ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10	pseudogene	no	ENST00000504828.1	1.091	0.000	0.698	0(1)	0(0)	0.003(57)	non tumor-specific	nAS	yes
UN_CLNS1A_LS0044	chr11:77629906|77637588:-	CLNS1A	chloride nucleotide-sensitive channel 1A	protein coding gene	no	.	3.621	0.341	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_ZDHHC5_LS0022	chr11:57690203|57690343:+	ZDHHC5	zinc finger DHHC-type palmitoyltransferase 5	protein coding gene	no	.	7.274	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC108515.1_UP_LS0007	chr4:97034689|97069829:+	AC108515.1	-	lncRNA gene	no	.	2.172	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0087	chr14:104942001|104945962:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	1.445	0.836	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_ALPK1_LS0025	chr4:112361263|112377678:+	ALPK1	alpha kinase 1	protein coding gene	no	.	0.934	0.082	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
RNF212_LS023	chr4:1094014|1096765:-	RNF212	ring finger protein 212	protein coding gene	no	ENST00000333673.5	0.536	0.858	1.092	0.27(2585)	0.427(300)	0.388(6741)	non tumor-specific	alt_3prime	yes
UN_DNAH14_LS0003	chr1:224929835|224952674:+	DNAH14	dynein axonemal heavy chain 14	protein coding gene	no	.	1.300	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
AL133370.1_LS001	chr14:68125409|68130066:-	AL133370.1	-	lncRNA gene	no	ENST00000554679.1	1.671	2.118	1.659	0.275(2632)	0.409(287)	0.131(2271)	non tumor-specific	nAS	yes
NFIA_LS010	chr1:61088680|61332512:+	NFIA	nuclear factor I A	protein coding gene	no	ENST00000371185.6	0.088	0.144	0.684	0.352(3373)	0.452(317)	0.134(2324)	non tumor-specific	exon_skip	yes
UN_FBXL13_LS0036	chr7:102934995|102939430:+	FBXL13	F-box and leucine rich repeat protein 13	protein coding gene	yes	.	19.546	0.515	0.000	0.002(23)	0.003(2)	0(0)	non tumor-specific	nAS	no
CDC42BPG_LS032	chr11:64833977|64834266:-	CDC42BPG	CDC42 binding protein kinase gamma	protein coding gene	no	ENST00000342711.5	18.154	13.660	6.769	0.719(6890)	0.821(576)	0.679(11798)	non tumor-specific	nAS	yes
LINC02208_LS003	chr5:118472189|118472849:-	LINC02208	long intergenic non-protein coding RNA 2208	lncRNA gene	no	ENST00000506769.1	0.919	0.091	1.684	0.001(5)	0.001(1)	0.053(928)	non tumor-specific	nAS	yes
FHIT_LS005	chr3:59886287|59922346:-	FHIT	fragile histidine triad diadenosine triphosphatase	protein coding gene	yes	ENST00000466788.1	0.133	0.001	0.695	0.009(83)	0.007(5)	0.064(1111)	non tumor-specific	exon_skip;mutex_exons	yes
MLF1_LS019	chr3:158593421|158596862:+	MLF1	myeloid leukemia factor 1	protein coding gene	no	ENST00000497004.5	0.121	0.000	1.438	0(4)	0(0)	0.063(1096)	non tumor-specific	alt_5prime;exon_skip	yes
SAP30L_LS010	chr5:154451213|154453402:+	SAP30L	SAP30 like	protein coding gene	no	ENST00000297109.10;ENST00000297109.10;ENST00000297109.10	25.815	15.056	37.675	0.998(9558)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP003419.2_LS001	chr11:67353663|67353857:+	AP003419.2	-	lncRNA gene	no	ENST00000613900.1	0.332	0.210	0.779	0.222(2126)	0.392(275)	0.215(3741)	non tumor-specific	nAS	yes
RIC8B_LS026	chr12:106874567|106885904:+	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	ENST00000355478.6	1.534	0.716	0.947	0.015(142)	0.038(27)	0.444(7720)	non tumor-specific	exon_skip;mutex_exons	yes
PLEKHA2_LS019	chr8:38936050|38943789:+	PLEKHA2	pleckstrin homology domain containing A2	protein coding gene	no	ENST00000521746.5;ENST00000616927.4;ENST00000617275.4;ENST00000519640.5	18.945	15.612	5.743	0.881(8438)	0.954(670)	0.924(16057)	non tumor-specific	alt_5prime;exon_skip	yes
UN_BGN_LS0147	chrX:153508469|153508673:-	BGN	biglycan	protein coding gene	no	.	21.721	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DXO_UP_LS0168	chr6:31999073|32031829:-	DXO	decapping exoribonuclease	protein coding gene	no	.	15.688	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
C2orf15_LS002	chr2:99142401|99147027:+	C2orf15	chromosome 2 open reading frame 15	protein coding gene	no	ENST00000409684.2	0.290	0.144	0.835	0.421(4035)	0.476(334)	0.235(4090)	non tumor-specific	exon_skip	yes
PHLDB1_LS049	chr11:118644174|118645356:+	PHLDB1	pleckstrin homology like domain family B member 1	protein coding gene	no	ENST00000361417.6;ENST00000600882.5;ENST00000356063.9;ENST00000614369.4;ENST00000527898.5;ENST00000534140.2;ENST00000392852.7;ENST00000524713.5;ENST00000529005.5;ENST00000361417.6;ENST00000600882.5;ENST00000356063.9;ENST00000614369.4;ENST00000527898.5;ENST00000534140.2;ENST00000392852.7;ENST00000524713.5;ENST00000529005.5	34.677	28.510	82.752	0.967(9267)	0.986(692)	0.955(16604)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC254633.1_UP_LS0002	chr1:12619427|12619798:-	AC254633.1	-	lncRNA gene	no	.	0.661	3.194	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SLAMF6_LS0002	chr1:160496246|160523144:-	SLAMF6	SLAM family member 6	protein coding gene	no	.	2.176	0.303	0.000	0.007(68)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF84_LS028	chr12:133048848|133056957:+	ZNF84	zinc finger protein 84	protein coding gene	no	ENST00000543758.5	0.373	0.141	0.645	0.16(1532)	0.131(92)	0.072(1246)	non tumor-specific	alt_3prime	yes
DNMT3A_LS033	chr2:25249724|25252194:-	DNMT3A	DNA methyltransferase 3 alpha	protein coding gene	yes	ENST00000380746.8	0.358	0.112	0.700	0.436(4173)	0.165(116)	0.114(1980)	non tumor-specific	exon_skip;mutex_exons	yes
UN_MINDY2_LS0012	chr15:58821819|58824697:+	MINDY2	MINDY lysine 48 deubiquitinase 2	protein coding gene	no	.	4.118	0.614	0.000	0.004(34)	0.003(2)	0(0)	non tumor-specific	nAS	no
DPY30_LS024	chr2:32039492|32039593:-	DPY30	dpy-30 histone methyltransferase complex regulatory subunit	protein coding gene	no	ENST00000295066.3	2.374	1.144	3.541	0.984(9427)	0.99(695)	0.944(16415)	non tumor-specific	alt_5prime	yes
SEPT7-AS1_LS002	chr7:35755195|35758179:-	SEPT7-AS1	SEPTIN7 divergent transcript	lncRNA gene	no	ENST00000437235.7	0.620	0.361	0.972	0.181(1736)	0.382(268)	0.466(8100)	non tumor-specific	nAS	yes
RYR2_LS026	chr1:237548590|237550544:+	RYR2	ryanodine receptor 2	protein coding gene	no	ENST00000366574.6;ENST00000360064.7	3.170	1.753	2.182	0.05(478)	0.125(88)	0.524(9112)	non tumor-specific	nAS	yes
UN_EIF4G1_LS0077	chr3:184323218|184323408:+	EIF4G1	eukaryotic translation initiation factor 4 gamma 1	protein coding gene	no	.	19.826	5.732	0.000	0.007(71)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_AGBL3_LS0023	chr7:135045574|135076397:+	AGBL3	ATP/GTP binding protein like 3	protein coding gene	no	.	2.170	0.341	0.000	0.009(83)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_GRM5-AS1_UP_LS0024	chr11:88400072|88423487:+	GRM5-AS1	GRM5 antisense RNA 1	lncRNA gene	no	.	2.409	0.243	0.000	0.013(121)	0.006(4)	0(0)	non tumor-specific	nAS	no
GOT1_LS007	chr10:99406849|99420624:-	GOT1	glutamic-oxaloacetic transaminase 1	protein coding gene	no	ENST00000370508.6	110.451	148.405	44.126	0.995(9537)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_LHFPL1_UP_LS0003	chrX:112716445|112718893:-	LHFPL1	LHFPL tetraspan subfamily member 1	protein coding gene	no	.	1.586	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
SNX2_LS015	chr5:122817373|122818818:+	SNX2	sorting nexin 2	protein coding gene	no	ENST00000379516.6;ENST00000514949.1;ENST00000510372.5;ENST00000506847.5;ENST00000514030.1	116.994	90.899	94.361	0.997(9554)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
OBSCN_LS023	chr1:228268805|228271925:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000570156.6;ENST00000366707.9	3.462	1.572	1.410	0.038(362)	0.058(41)	0.553(9605)	non tumor-specific	exon_skip	yes
FAM21FP_LS009	chr10:45719955|45721699:-	FAM21FP	family with sequence similarity 21 member F, pseudogene	pseudogene	no	ENST00000608251.5	1.289	0.992	0.692	0.24(2299)	0.393(276)	0.107(1860)	non tumor-specific	nAS	yes
UN_PPIB_LS0028	chr15:64162154|64162493:-	PPIB	peptidylprolyl isomerase B	protein coding gene	no	.	108.217	5.958	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_GOLGA8B_LS0032	chr15:34553045|34553797:-	GOLGA8B	golgin A8 family member B	protein coding gene	no	.	2.676	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEL1L3_LS0017	chr4:25767830|25779076:-	SEL1L3	SEL1L family member 3	protein coding gene	no	.	7.062	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	exon_skip	no
NSUN5_LS013	chr7:73305097|73307394:-	NSUN5	NOP2/Sun RNA methyltransferase 5	protein coding gene	no	ENST00000428206.5;ENST00000471461.5;ENST00000252594.10;ENST00000438747.6;ENST00000310326.8;ENST00000428206.5;ENST00000471461.5;ENST00000252594.10;ENST00000438747.6;ENST00000310326.8	88.003	31.175	34.526	0.995(9535)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_ACAP3_LS0013	chr1:1293911|1294090:-	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein coding gene	no	.	2.757	0.157	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_AL139289.2_LS0010	chr1:43358108|43358419:-	AL139289.2	-	lncRNA gene	no	.	2.792	0.813	0.000	0.154(1472)	0.141(99)	0(0)	non tumor-specific	nAS	no
UN_MIR572_UP_LS0044	chr4:11120831|11141452:+	MIR572	microRNA 572	small non-coding RNA gene	no	.	1.477	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TBC1D5_LS0074	chr3:17543465|17562019:-	TBC1D5	TBC1 domain family member 5	protein coding gene	no	.	1.663	0.161	0.000	0.006(57)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ACKR2_LS002	chr3:42809308|42809473:+	ACKR2	atypical chemokine receptor 2	protein coding gene	no	ENST00000565749.1	0.493	0.274	0.730	0.004(40)	0.009(6)	0.091(1588)	non tumor-specific	nAS	yes
UN_NFIC_LS0142	chr19:3465749|3465819:+	NFIC	nuclear factor I C	protein coding gene	no	.	8.405	0.466	0.000	0.003(26)	0.001(1)	0(0)	non tumor-specific	nAS	no
CYSTM1_LS003	chr5:140175285|140194446:+	CYSTM1	cysteine rich transmembrane module containing 1	protein coding gene	no	ENST00000261811.5;ENST00000509589.5;ENST00000504227.5;ENST00000644078.1;ENST00000261811.5;ENST00000509589.5;ENST00000504227.5;ENST00000644078.1	135.516	208.329	147.338	0.993(9511)	0.983(690)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MS4A14_LS0009	chr11:60392786|60394946:+	MS4A14	membrane spanning 4-domains A14	protein coding gene	no	.	5.641	1.329	0.000	0.021(202)	0.031(22)	0(0)	non tumor-specific	nAS	no
ITGA9_LS021	chr3:37741819|37743926:+	ITGA9	integrin subunit alpha 9	protein coding gene	no	ENST00000264741.9	16.235	15.547	7.221	0.765(7325)	0.96(674)	0.871(15147)	non tumor-specific	nAS	yes
GAREM1_LS009	chr18:32288203|32310193:-	GAREM1	GRB2 associated regulator of MAPK1 subtype 1	protein coding gene	no	ENST00000399218.8;ENST00000269209.6;ENST00000578619.1	7.463	7.821	5.141	0.802(7680)	0.946(664)	0.893(15514)	non tumor-specific	exon_skip	yes
UN_NRGN_LS0028	chr11:124746330|124746773:-	NRGN	neurogranin	protein coding gene	no	.	1.244	0.543	0.000	0.044(423)	0.084(59)	0(0)	non tumor-specific	nAS	no
UN_IPPK_LS0026	chr9:92635308|92637191:-	IPPK	inositol-pentakisphosphate 2-kinase	protein coding gene	no	.	2.660	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PCBP1-AS1_LS113	chr2:70085624|70086343:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	ENST00000432604.5	0.000	0.000	0.607	0.043(413)	0.053(37)	0.01(169)	non tumor-specific	nAS	yes
UN_ADAMTS1_LS0016	chr21:26842685|26842797:-	ADAMTS1	ADAM metallopeptidase with thrombospondin type 1 motif 1	protein coding gene	no	.	12.517	4.085	0.000	0.002(23)	0.007(5)	0(0)	non tumor-specific	intron_retention	no
UN_SRRT_LS0007	chr7:100877664|100881285:+	SRRT	serrate, RNA effector molecule	protein coding gene	no	.	1.375	0.499	0.000	0.006(60)	0.006(4)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_DCX_LS0002	chrX:111301743|111330904:-	DCX	doublecortin	protein coding gene	no	.	2.021	0.101	0.000	0.024(226)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
PRICKLE3_LS003	chrX:49177202|49178272:-	PRICKLE3	prickle planar cell polarity protein 3	protein coding gene	no	.;.	0.731	2.387	0.000	0.003(29)	0.026(18)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC024941.1_UP_LS0011	chr12:88599064|88600283:+	AC024941.1	-	lncRNA gene	no	.	1.169	1.044	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	nAS	no
TMEM45B_LS001	chr11:129815898|129827024:+	TMEM45B	transmembrane protein 45B	protein coding gene	no	ENST00000525709.5	0.207	0.107	0.835	0.165(1582)	0.262(184)	0.082(1428)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
IL16_LS029	chr15:81297078|81299380:+	IL16	interleukin 16	protein coding gene	no	ENST00000360547.9;ENST00000394660.6;ENST00000302987.8;ENST00000560115.5;ENST00000394652.6	3.807	3.697	11.917	0.869(8326)	0.946(664)	0.946(16439)	non tumor-specific	alt_3prime	yes
MAMDC2_LS009	chr9:70143819|70168702:+	MAMDC2	MAM domain containing 2	protein coding gene	no	ENST00000377182.4	8.943	21.047	21.796	0.442(4237)	0.895(628)	0.859(14923)	non tumor-specific	nAS	yes
DNAH1_LS057	chr3:52385447|52386160:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	ENST00000486752.5;ENST00000420323.6;ENST00000488988.5	2.191	1.137	7.900	0.443(4247)	0.484(340)	0.967(16812)	non tumor-specific	nAS	yes
UN_DMPK_LS0044	chr19:45778638|45779243:+	DMPK	DM1 protein kinase	protein coding gene	no	.	3.267	0.187	0.000	0.003(31)	0.001(1)	0(0)	non tumor-specific	nAS	no
CNTNAP1_LS012	chr17:42690207|42690739:+	CNTNAP1	contactin associated protein 1	protein coding gene	no	ENST00000264638.8;ENST00000591662.1;ENST00000585534.1	4.674	10.074	15.259	0.866(8294)	0.869(610)	0.952(16540)	non tumor-specific	alt_3prime	yes
UN_MFSD8_LS0007	chr4:127939997|127940866:-	MFSD8	major facilitator superfamily domain containing 8	protein coding gene	no	.	0.944	0.399	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
SMARCA2_LS077	chr9:2159909|2161001:+	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein coding gene	yes	ENST00000635590.1;ENST00000634989.1;ENST00000636367.1	0.167	0.201	1.099	0.331(3169)	0.523(367)	0.504(8768)	non tumor-specific	alt_3prime;exon_skip	yes
DAAM1_LS023	chr14:59353964|59355165:+	DAAM1	dishevelled associated activator of morphogenesis 1	protein coding gene	no	ENST00000360909.7;ENST00000395125.1;ENST00000554459.5	11.753	12.767	15.021	0.945(9054)	0.983(690)	0.961(16699)	non tumor-specific	exon_skip	yes
INS-IGF2_LS004	chr11:2135529|2147566:-	INS-IGF2	INS-IGF2 readthrough	protein coding gene	no	ENST00000356578.8	0.458	9.998	1.156	0.118(1135)	0.13(91)	0.135(2348)	non tumor-specific	nAS	yes
LINC01189_LS002	chr9:62518455|62521679:+	LINC01189	long intergenic non-protein coding RNA 1189	lncRNA gene	no	ENST00000428440.1	0.390	0.073	0.677	0.072(694)	0.132(93)	0.006(109)	non tumor-specific	nAS	yes
AC012668.2_LS001	chr2:215530534|215531489:-	AC012668.2	-	lncRNA gene	no	ENST00000431727.2	1.536	0.000	0.578	0(1)	0(0)	0.002(32)	non tumor-specific	nAS	yes
VPS13D_LS079	chr1:12415221|12416660:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4;ENST00000011700.10;ENST00000646411.1;ENST00000543710.5;ENST00000645371.1;ENST00000476045.5;ENST00000481484.1	35.176	33.975	40.993	0.981(9400)	0.996(699)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_AL353743.2_UP_LS0007	chr9:86015776|86033282:-	AL353743.2	-	lncRNA gene	no	.	10.505	0.000	0.000	0.004(38)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AHNAK2_LS0472	chr14:104949436|104952902:-	AHNAK2	AHNAK nucleoprotein 2	protein coding gene	no	.	0.800	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
UN_LPIN1_LS0039	chr2:11767858|11771376:+	LPIN1	lipin 1	protein coding gene	no	.	3.016	0.219	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
GSTZ1_LS029	chr14:77330359|77331069:+	GSTZ1	glutathione S-transferase zeta 1	protein coding gene	no	ENST00000216465.9;ENST00000361389.8;ENST00000554279.5;ENST00000557639.5;ENST00000349555.7;ENST00000556627.5;ENST00000557053.5;ENST00000393734.5;ENST00000555093.1;ENST00000553586.5;ENST00000554381.1;ENST00000555208.1	59.817	42.766	31.861	0.967(9266)	0.979(687)	0.979(17016)	non tumor-specific	alt_3prime	yes
UN_AL591485.1_LS0013	chr6:8493778|8498514:+	AL591485.1	-	no	no	.	1.234	0.157	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NAP1L1_LS0025	chr12:76055090|76059798:-	NAP1L1	nucleosome assembly protein 1 like 1	protein coding gene	no	.	21.825	2.214	0.000	0.006(61)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
DENND5B_LS024	chr12:31499671|31500393:-	DENND5B	DENN domain containing 5B	protein coding gene	no	ENST00000536562.5	0.115	0.048	0.738	0.059(562)	0.034(24)	0.058(1016)	non tumor-specific	exon_skip	yes
ERCC6_LS016	chr10:49483516|49488158:-	ERCC6	ERCC excision repair 6, chromatin remodeling factor	protein coding gene	no	ENST00000623073.3	0.171	0.001	0.662	0.012(116)	0.017(12)	0.086(1492)	non tumor-specific	nAS	yes
PTBP1_LS035	chr19:810620|810694:+	PTBP1	polypyrimidine tract binding protein 1	protein coding gene	no	ENST00000356948.10;ENST00000635647.1;ENST00000627714.2;ENST00000349038.8;ENST00000586944.5;ENST00000394601.8;ENST00000350092.8;ENST00000621737.4;ENST00000585932.5;ENST00000585856.2	499.910	227.842	202.395	0.995(9533)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
VAV3_LS023	chr1:107683533|107688381:-	VAV3	vav guanine nucleotide exchange factor 3	protein coding gene	yes	ENST00000370056.8;ENST00000527011.5;ENST00000415432.6;ENST00000343258.8;ENST00000479977.6;ENST00000469325.5;ENST00000490388.2	17.489	23.346	3.801	0.822(7879)	0.893(627)	0.824(14315)	non tumor-specific	exon_skip;mutex_exons	yes
LINC01291_LS001	chr2:74918459|74931418:+	LINC01291	long intergenic non-protein coding RNA 1291	lncRNA gene	no	ENST00000435984.1	0.345	0.065	0.602	0.064(611)	0.009(6)	0.007(124)	non tumor-specific	nAS	yes
UN_CCSER1_LS0017	chr4:90309608|90310538:+	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	.	7.879	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_SUCLG2-AS1_LS0001	chr3:67655074|67668213:+	SUCLG2-AS1	SUCLG2 antisense RNA 1 (head to head)	lncRNA gene	no	.	0.993	0.205	0.000	0.004(35)	0.009(6)	0(0)	non tumor-specific	nAS	no
RGS6_LS002	chr14:71933302|71964772:+	RGS6	regulator of G protein signaling 6	protein coding gene	no	ENST00000553530.5;ENST00000554474.5;ENST00000556437.5	0.333	0.197	1.149	0.117(1119)	0.201(141)	0.28(4863)	non tumor-specific	nAS	yes
ADIPOR1_LS008	chr1:202946610|202948304:-	ADIPOR1	adiponectin receptor 1	protein coding gene	no	ENST00000340990.9;ENST00000367254.7;ENST00000417068.5;ENST00000426229.1	255.858	163.641	94.476	0.996(9540)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ACYP1_LS0005	chr14:75056560|75063470:-	ACYP1	acylphosphatase 1	protein coding gene	no	.	4.459	0.749	0.000	0.222(2124)	0.078(55)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
ALDH3A1_LS012	chr17:19742212|19742545:-	ALDH3A1	aldehyde dehydrogenase 3 family member A1	protein coding gene	no	ENST00000468746.5;ENST00000395555.7;ENST00000479677.6;ENST00000494157.6;ENST00000225740.10;ENST00000444455.5;ENST00000457500.6;ENST00000439102.6;ENST00000485472.3;ENST00000426645.2	18.383	42.054	2.404	0.63(6039)	0.821(576)	0.704(12229)	non tumor-specific	exon_skip	yes
UN_AC068152.1_LS0022	chr17:47082354|47099835:-	AC068152.1	-	lncRNA gene	no	.	0.976	0.114	0.000	0.005(50)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_CHST12_LS0005	chr7:2404216|2432563:+	CHST12	carbohydrate sulfotransferase 12	protein coding gene	no	.	1.145	0.436	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	nAS	no
XRRA1_LS016	chr11:74851203|74862981:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	.;.	1.493	0.086	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC140134.1_UP_LS0019	chr5:70197390|70219918:-	AC140134.1	-	pseudogene	no	.	1.733	0.346	0.000	0.058(557)	0.104(73)	0(0)	non tumor-specific	nAS	no
UN_AL360085.1_UP_LS0040	chr6:112591010|112593102:+	AL360085.1	-	pseudogene	no	.	1.537	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
SPATS2_LS031	chr12:49490731|49494741:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000550997.5;ENST00000549412.5;ENST00000553127.5;ENST00000321898.10;ENST00000552918.5;ENST00000549045.5;ENST00000552557.5;ENST00000552655.1	29.948	14.175	13.071	0.98(9386)	0.98(688)	0.969(16836)	non tumor-specific	exon_skip	yes
UN_AC019118.1_UP_LS0009	chr2:2682179|2692625:+	AC019118.1	-	lncRNA gene	no	.	2.877	0.198	0.000	0.01(95)	0.001(1)	0(0)	non tumor-specific	nAS	no
HMGCS1_LS004	chr5:43294162|43294691:-	HMGCS1	3-hydroxy-3-methylglutaryl-CoA synthase 1	protein coding gene	no	ENST00000325110.10;ENST00000433297.2;ENST00000508319.1	81.792	67.957	38.770	0.993(9510)	0.997(700)	0.978(17001)	non tumor-specific	exon_skip;intron_retention	yes
UN_AC098820.3_LS0002	chr2:216486882|216487126:-	AC098820.3	-	lncRNA gene	no	.	2.698	0.180	0.000	0.04(384)	0.014(10)	0(0)	non tumor-specific	nAS	no
LIG1_LS019	chr19:48136125|48137008:-	LIG1	leucine rich repeats and immunoglobulin like domains 1	protein coding gene	no	ENST00000263274.11;ENST00000536218.5;ENST00000594759.5;ENST00000427526.6;ENST00000594067.5;ENST00000613670.4;ENST00000601091.5;ENST00000597901.1;ENST00000542460.5	35.360	9.598	10.173	0.99(9485)	0.991(696)	0.972(16897)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_AC046144.1_UP_LS0051	chr3:104907465|104909874:-	AC046144.1	-	pseudogene	no	.	4.225	0.894	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	nAS	no
TNFSF10_LS012	chr3:172518465|172523253:-	TNFSF10	TNF superfamily member 10	protein coding gene	no	ENST00000466777.1	0.054	0.045	1.118	0.416(3983)	0.48(337)	0.402(6987)	non tumor-specific	exon_skip;intron_retention	yes
UN_GRB7_LS0018	chr17:39743470|39744118:+	GRB7	growth factor receptor bound protein 7	protein coding gene	no	.	8.775	1.412	0.000	0.005(44)	0.004(3)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
PPARGC1B_LS002	chr5:149730420|149820433:+	PPARGC1B	PPARG coactivator 1 beta	protein coding gene	no	ENST00000360453.8;ENST00000394320.7;ENST00000309241.9	1.875	1.178	1.388	0.33(3160)	0.353(248)	0.582(10121)	non tumor-specific	exon_skip	yes
UN_TMOD1_LS0013	chr9:97587102|97591291:+	TMOD1	tropomodulin 1	protein coding gene	no	.	2.224	0.097	0.000	0.02(194)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_NAA60_LS0014	chr16:3485504|3485616:-	NAA60	N-alpha-acetyltransferase 60, NatF catalytic subunit	protein coding gene	no	.	0.650	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NBPF20_UP_LS0030	chr1:145423431|145425353:-	NBPF20	NBPF member 20	protein coding gene	no	.	1.481	0.073	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	nAS	no
AL359644.1_LS004	chr9:121375325|121440376:+	AL359644.1	-	lncRNA gene	no	ENST00000440807.1	0.450	0.056	0.662	0.005(45)	0.004(3)	0.018(317)	non tumor-specific	nAS	yes
UBA6_LS018	chr4:67641228|67644698:-	UBA6	ubiquitin like modifier activating enzyme 6	protein coding gene	no	ENST00000322244.9;ENST00000505673.2	16.524	8.400	12.619	0.912(8739)	0.96(674)	0.97(16866)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGAP31_LS005	chr3:119380986|119382292:+	ARHGAP31	Rho GTPase activating protein 31	protein coding gene	no	ENST00000264245.8;ENST00000482743.1	11.684	12.207	7.123	0.745(7138)	0.912(640)	0.936(16272)	non tumor-specific	nAS	yes
UN_MIR663AHG_UP_LS0006	chr20:28559671|28563830:-	MIR663AHG	MIR663A host gene	lncRNA gene	no	.	2.048	1.469	0.000	0.043(410)	0.097(68)	0(0)	non tumor-specific	nAS	no
UN_AC087500.2_LS0006	chr17:5240959|5241000:-	AC087500.2	-	lncRNA gene	no	.	3.528	1.090	0.000	0.004(41)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_NLGN2_LS0001	chr17:7405610|7407615:+	NLGN2	neuroligin 2	protein coding gene	no	.	2.980	1.200	0.000	0.024(234)	0.053(37)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_DOP1B_LS0075	chr21:36293722|36293857:-	DOP1B	DOP1 leucine zipper like protein B	protein coding gene	no	.	1.129	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AC005808.1_LS002	chr20:53617998|53634530:+	AC005808.1	-	lncRNA gene	no	ENST00000444112.1	0.445	0.084	0.657	0.004(41)	0.001(1)	0.002(36)	non tumor-specific	nAS	yes
MISP_LS004	chr19:760039|761625:+	MISP	mitotic spindle positioning	protein coding gene	no	ENST00000215582.7	112.561	105.425	1.921	0.703(6733)	0.783(550)	0.441(7663)	non tumor-specific	nAS	yes
TDG_LS021	chr12:103983218|103983295:+	TDG	thymine DNA glycosylase	protein coding gene	no	ENST00000392872.7;ENST00000266775.13;ENST00000544861.5;ENST00000537100.5	19.417	10.192	7.718	0.962(9215)	0.989(694)	0.954(16575)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TRMT12_LS003	chr8:124451257|124462027:+	TRMT12	tRNA methyltransferase 12 homolog	protein coding gene	no	ENST00000521443.1	0.133	0.126	0.691	0.229(2198)	0.265(186)	0.151(2623)	non tumor-specific	nAS	yes
CDHR5_LS030	chr11:620164|620296:-	CDHR5	cadherin related family member 5	protein coding gene	no	ENST00000397542.6;ENST00000358353.7;ENST00000531177.5;ENST00000349570.11;ENST00000531899.5	44.840	93.229	1.213	0.275(2638)	0.368(258)	0.266(4627)	non tumor-specific	alt_3prime	yes
TTN_LS364	chr2:178784351|178785620:-	TTN	titin	protein coding gene	no	ENST00000342992.10;ENST00000460472.6;ENST00000589042.5;ENST00000591111.5;ENST00000359218.10;ENST00000342175.11;ENST00000615779.5;ENST00000360870.9	5.418	14.340	7.630	0.01(99)	0.027(19)	0.166(2894)	non tumor-specific	nAS	yes
UN_AP001330.4_UP_LS0003	chr8:101315516|101316519:+	AP001330.4	-	pseudogene	no	.	9.912	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SSR3_LS012	chr3:156553781|156554737:-	SSR3	signal sequence receptor subunit 3	protein coding gene	no	ENST00000463503.5	0.349	0.138	0.649	0.25(2396)	0.222(156)	0.109(1897)	non tumor-specific	alt_5prime	yes
UN_C12orf43_UP_LS0001	chr12:121019030|121019845:-	C12orf43	chromosome 12 open reading frame 43	protein coding gene	no	.	1.135	0.762	0.000	0.005(50)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RN7SKP184_UP_LS0001	chr20:52972316|52972618:+	RN7SKP184	RN7SK pseudogene 184	small non-coding RNA gene	no	.	0.883	0.235	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PPP1R10_LS0021	chr6:30602244|30602335:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	.	22.628	12.016	0.000	0.108(1036)	0.108(76)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_RPL10AP3_UP_LS0011	chr8:35056170|35094263:-	RPL10AP3	ribosomal protein L10a pseudogene 3	pseudogene	no	.	3.166	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GNPNAT1_LS0020	chr14:52778458|52778758:-	GNPNAT1	glucosamine-phosphate N-acetyltransferase 1	protein coding gene	no	.	2.699	0.617	0.000	0.006(56)	0.01(7)	0(0)	non tumor-specific	exon_skip	no
UN_EXOSC4_LS0007	chr8:144079534|144079943:+	EXOSC4	exosome component 4	protein coding gene	no	.	1.986	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
ICK_LS007	chr6:53016250|53018330:-	ICK	ciliogenesis associated kinase 1	protein coding gene	no	ENST00000350082.9;ENST00000356971.3	11.715	9.825	5.956	0.88(8436)	0.956(671)	0.933(16217)	non tumor-specific	exon_skip	yes
CELSR3_LS009	chr3:48643677|48644716:-	CELSR3	cadherin EGF LAG seven-pass G-type receptor 3	protein coding gene	no	.;.	1.339	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
LIMS2_LS030	chr2:127643550|127644069:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	ENST00000409754.5	0.031	0.025	1.197	0.057(547)	0.148(104)	0.437(7597)	non tumor-specific	exon_skip;intron_retention	yes
FAM122C_LS035	chrX:134849228|134852800:+	FAM122C	family with sequence similarity 122C	protein coding gene	no	ENST00000645433.1;ENST00000460216.5	0.390	0.228	1.288	0.219(2102)	0.191(134)	0.619(10755)	non tumor-specific	exon_skip;mutex_exons	yes
MRPL45_LS002	chr17:38298626|38299351:+	MRPL45	mitochondrial ribosomal protein L45	protein coding gene	no	ENST00000619548.1;ENST00000613675.4	74.698	45.189	28.780	0.996(9541)	0.997(700)	0.979(17010)	non tumor-specific	exon_skip	yes
ACVRL1_LS013	chr12:51921827|51923140:+	ACVRL1	activin A receptor like type 1	protein coding gene	no	ENST00000550084.1	0.215	0.052	0.668	0.636(6098)	0.707(496)	0.041(704)	non tumor-specific	intron_retention	yes
AC137579.2_LS001	chr8:37600727|37602794:-	AC137579.2	-	lncRNA gene	no	ENST00000517714.1	0.525	0.000	0.599	0(4)	0(0)	0.006(112)	non tumor-specific	nAS	yes
PTPRH_LS031	chr19:55206976|55207166:-	PTPRH	protein tyrosine phosphatase receptor type H	protein coding gene	no	ENST00000588559.5;ENST00000588370.5	1.164	1.602	1.182	0.435(4163)	0.293(206)	0.3(5206)	non tumor-specific	alt_3prime;alt_5prime	yes
MAP4K5_LS018	chr14:50446121|50447414:-	MAP4K5	mitogen-activated protein kinase kinase kinase kinase 5	protein coding gene	no	ENST00000554990.5;ENST00000013125.8	37.979	24.989	38.419	0.939(8994)	0.973(683)	0.978(16991)	non tumor-specific	alt_5prime	yes
CRIPT_LS003	chr2:46618838|46619627:+	CRIPT	CXXC repeat containing interactor of PDZ3 domain	protein coding gene	no	ENST00000486447.1;ENST00000238892.3	85.660	43.905	35.173	0.996(9547)	0.997(700)	0.979(17018)	non tumor-specific	alt_3prime	yes
AC069079.1_LS001	chr10:51302824|51306569:+	AC069079.1	-	lncRNA gene	no	ENST00000419889.1	1.377	0.000	0.713	0(1)	0(0)	0(7)	non tumor-specific	nAS	yes
UN_SERGEF_LS0020	chr11:17878244|17918733:-	SERGEF	secretion regulating guanine nucleotide exchange factor	protein coding gene	no	.	0.655	0.192	0.000	0.005(47)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_OR7E108P_UP_LS0014	chr9:90957424|90982986:-	OR7E108P	olfactory receptor family 7 subfamily E member 108 pseudogene	pseudogene	no	.	1.984	0.000	0.000	0.004(35)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NCF1C_LS0003	chr7:75157965|75160659:-	NCF1C	neutrophil cytosolic factor 1C pseudogene	pseudogene	no	.	4.287	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
CDKN2B-AS1_LS010	chr9:22049228|22077679:+	CDKN2B-AS1	CDKN2B antisense RNA 1	lncRNA gene	no	ENST00000583719.5	0.085	0.006	0.674	0.063(604)	0.004(3)	0.012(202)	non tumor-specific	nAS	yes
ACADVL_LS010	chr17:7220197|7220766:+	ACADVL	acyl-CoA dehydrogenase very long chain	protein coding gene	no	ENST00000577857.5;ENST00000577857.5	0.009	0.009	0.827	0.606(5803)	0.744(522)	0.4(6960)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL390334.1_LS0032	chr14:27566853|27589888:+	AL390334.1	-	pseudogene	no	.	4.763	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CDK6_LS005	chr7:92725793|92774696:-	CDK6	cyclin dependent kinase 6	protein coding gene	yes	ENST00000265734.8;ENST00000424848.2	21.836	4.342	4.282	0.707(6776)	0.815(572)	0.9(15639)	non tumor-specific	exon_skip	yes
MPHOSPH8_LS008	chr13:19659289|19661698:+	MPHOSPH8	M-phase phosphoprotein 8	protein coding gene	no	ENST00000361479.9	36.772	30.991	25.755	0.984(9429)	0.996(699)	0.979(17012)	non tumor-specific	exon_skip	yes
UN_ALCAM_UP_LS0001	chr3:104443263|104502706:+	ALCAM	activated leukocyte cell adhesion molecule	protein coding gene	no	.	4.952	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
WDPCP_LS026	chr2:63492940|63571375:-	WDPCP	WD repeat containing planar cell polarity effector	protein coding gene	no	ENST00000417238.5	1.110	0.647	0.851	0.091(873)	0.107(75)	0.384(6677)	non tumor-specific	exon_skip;mutex_exons	yes
UN_PEX26_LS0073	chr22:18095311|18121479:+	PEX26	peroxisomal biogenesis factor 26	protein coding gene	no	.	1.303	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL359510.1_UP_LS0001	chr1:228148893|228151794:-	AL359510.1	-	pseudogene	no	.	7.013	1.687	0.000	0.024(228)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_GOLGA3_LS0049	chr12:132780914|132784164:-	GOLGA3	golgin A3	protein coding gene	no	.	1.458	0.124	0.000	0.007(63)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_ATOH8_LS0016	chr2:85781166|85784603:+	ATOH8	atonal bHLH transcription factor 8	protein coding gene	no	.	2.526	1.149	0.000	0.006(57)	0.021(15)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_AC243960.5_UP_LS0003	chr19:41641858|41663211:-	AC243960.5	-	pseudogene	no	.	2.263	1.758	0.000	0.009(83)	0.027(19)	0(0)	non tumor-specific	nAS	no
UN_TAF10_LS0046	chr11:6611002|6611189:-	TAF10	TATA-box binding protein associated factor 10	protein coding gene	no	.	40.732	3.542	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
EIF4G3_LS033	chr1:20942330|20950003:-	EIF4G3	eukaryotic translation initiation factor 4 gamma 3	protein coding gene	no	ENST00000264211.12;ENST00000602326.5;ENST00000400422.6;ENST00000634879.1;ENST00000356916.7	15.328	12.563	22.398	0.943(9039)	0.984(691)	0.978(17000)	non tumor-specific	exon_skip	yes
LINC00944_LS005	chr12:126732407|126746261:-	LINC00944	long intergenic non-protein coding RNA 944	lncRNA gene	no	ENST00000540684.5	3.632	0.561	0.860	0.252(2418)	0.064(45)	0.247(4295)	non tumor-specific	nAS	yes
LCA5L_LS014	chr21:39429211|39438684:-	LCA5L	lebercilin LCA5 like	protein coding gene	no	ENST00000438404.5;ENST00000468009.6	0.161	0.078	0.663	0.04(382)	0.066(46)	0.013(221)	non tumor-specific	exon_skip;mutex_exons	yes
UN_CTSS_LS0023	chr1:150750165|150751781:-	CTSS	cathepsin S	protein coding gene	no	.	85.566	8.851	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SGO1-AS1_LS012	chr3:21034443|21041752:+	SGO1-AS1	SGO1 antisense RNA 1	lncRNA gene	no	ENST00000634837.1	1.767	0.000	0.693	0.001(8)	0(0)	0.028(484)	non tumor-specific	nAS	yes
UN_AP003781.1_UP_LS0002	chr11:96077246|96506998:+	AP003781.1	-	lncRNA gene	no	.	3.581	4.262	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_STON1-GTF2A1L_UP_LS0003	chr2:48515834|48529880:+	STON1-GTF2A1L	STON1-GTF2A1L readthrough	protein coding gene	no	.	0.542	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DDX51_UP_LS0008	chr12:132159485|132159649:-	DDX51	DEAD-box helicase 51	protein coding gene	no	.	1.672	0.196	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_APPL1_LS0011	chr3:57247477|57248202:+	APPL1	adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1	protein coding gene	no	.	2.822	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_WNT3_LS0013	chr17:46770048|46772137:-	WNT3	Wnt family member 3	protein coding gene	yes	.	1.223	0.503	0.000	0.094(904)	0.071(50)	0(0)	non tumor-specific	nAS	no
UN_C2orf27A_UP_LS0003	chr2:131613103|131648254:+	C2orf27A	chromosome 2 open reading frame 27A	pseudogene	no	.	1.293	0.695	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_ZNF558_LS0030	chr19:8831401|8831564:-	ZNF558	zinc finger protein 558	protein coding gene	no	.	0.836	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_UBR2_LS0013	chr6:42607657|42607690:+	UBR2	ubiquitin protein ligase E3 component n-recognin 2	protein coding gene	no	.	1.811	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
TC2N_LS021	chr14:91813825|91836371:-	TC2N	tandem C2 domains, nuclear	protein coding gene	no	ENST00000360594.9;ENST00000556018.5;ENST00000360594.9;ENST00000556018.5	4.431	4.477	4.245	0.72(6897)	0.87(611)	0.729(12666)	non tumor-specific	alt_5prime;exon_skip	yes
TTI2_LS007	chr8:33507321|33509746:-	TTI2	TELO2 interacting protein 2	protein coding gene	no	ENST00000519356.1;ENST00000613904.1;ENST00000360742.9;ENST00000431156.6	19.663	10.070	13.480	0.992(9505)	0.996(699)	0.978(16999)	non tumor-specific	exon_skip	yes
UN_CHD9_LS0011	chr16:53055077|53141179:+	CHD9	chromodomain helicase DNA binding protein 9	protein coding gene	no	.	1.480	0.217	0.000	0.004(38)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RPS6KA3_LS0033	chrX:20240605|20266564:-	RPS6KA3	ribosomal protein S6 kinase A3	protein coding gene	no	.	0.681	0.390	0.711	0.292(2799)	0.397(279)	0.242(4203)	non tumor-specific	alt_3prime;exon_skip	no
UN_CRAT_LS0041	chr9:129104306|129107606:-	CRAT	carnitine O-acetyltransferase	protein coding gene	no	.	22.155	0.048	0.000	0.002(23)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
UN_CREB3L3_LS0048	chr19:4172369|4172426:-	CREB3L3	cAMP responsive element binding protein 3 like 3	protein coding gene	no	.	5.858	9.617	0.000	0.003(29)	0.006(4)	0(0)	non tumor-specific	nAS	no
CCDC74A_LS021	chr2:131532781|131532864:+	CCDC74A	coiled-coil domain containing 74A	protein coding gene	no	ENST00000295171.10;ENST00000409856.7;ENST00000434330.1	28.968	15.804	11.021	0.932(8927)	0.926(650)	0.927(16118)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
PTPRN2_LS011	chr7:157656551|157682725:-	PTPRN2	protein tyrosine phosphatase receptor type N2	protein coding gene	no	ENST00000389413.7;ENST00000409483.5;ENST00000389416.8;ENST00000389418.8	26.645	19.546	2.743	0.396(3794)	0.483(339)	0.672(11683)	non tumor-specific	exon_skip	yes
UN_CACNA2D1_LS0013	chr7:81997250|81999079:-	CACNA2D1	calcium voltage-gated channel auxiliary subunit alpha2delta 1	protein coding gene	no	.	1.719	0.246	0.000	0.015(143)	0.009(6)	0(0)	non tumor-specific	nAS	no
ZCCHC8_LS018	chr12:122490567|122490935:-	ZCCHC8	zinc finger CCHC-type containing 8	protein coding gene	no	ENST00000536663.5	0.221	0.223	0.796	0.037(358)	0.046(32)	0.372(6465)	non tumor-specific	exon_skip	yes
UN_AC068234.1_LS0060	chr17:47324717|47326226:+	AC068234.1	-	protein coding gene	no	.	0.601	0.000	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
TPD52L2_LS024	chr20:63882820|63889190:+	TPD52L2	TPD52 like 2	protein coding gene	no	ENST00000369927.8;ENST00000346249.8;ENST00000348257.9;ENST00000369927.8;ENST00000346249.8;ENST00000348257.9	167.103	87.334	91.787	0.996(9542)	0.997(700)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	yes
ACAT1_LS002	chr11:108121893|108127886:+	ACAT1	acetyl-CoA acetyltransferase 1	protein coding gene	no	ENST00000531853.5	0.075	0.021	0.686	0.003(32)	0.006(4)	0.007(116)	non tumor-specific	exon_skip	yes
SF3A3_LS013	chr1:37979533|37980586:-	SF3A3	splicing factor 3a subunit 3	protein coding gene	no	ENST00000373019.4;ENST00000489537.5;ENST00000461869.5;ENST00000470585.5;ENST00000488934.1	90.704	48.644	56.971	0.998(9563)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
AC004922.1_LS007	chr7:99335484|99338181:+	AC004922.1	-	protein coding gene	no	ENST00000441989.6	0.010	0.000	0.672	0.034(321)	0.009(6)	0.107(1860)	non tumor-specific	alt_5prime;exon_skip	yes
ENPP6_LS005	chr4:184117900|184124161:-	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein coding gene	no	ENST00000296741.6;ENST00000512353.1	3.321	5.356	1.925	0.123(1180)	0.342(240)	0.371(6457)	non tumor-specific	nAS	yes
UN_ZNF558_LS0013	chr19:8821635|8822003:-	ZNF558	zinc finger protein 558	protein coding gene	no	.	2.636	1.370	0.000	0.126(1207)	0.113(79)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC107057.1_LS0004	chr2:5550193|5555989:-	AC107057.1	-	lncRNA gene	no	.	1.918	0.566	0.000	0.006(62)	0.044(31)	0(0)	non tumor-specific	nAS	no
TNKS2_LS011	chr10:91831181|91833853:+	TNKS2	tankyrase 2	protein coding gene	no	ENST00000371627.4	28.457	23.941	17.064	0.91(8717)	0.976(685)	0.972(16892)	non tumor-specific	nAS	yes
UN_SLC35E2A_LS0024	chr1:1731162|1739873:+	SLC35E2A	solute carrier family 35 member E2A	protein coding gene	no	.	1.364	0.363	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_FAM86B3P_LS0010	chr8:8237275|8238310:+	FAM86B3P	family with sequence similarity 86 member B3, pseudogene	pseudogene	no	.	2.186	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	nAS	no
MGAT4C_LS014	chr12:86001581|86049674:-	MGAT4C	MGAT4 family member C	protein coding gene	no	.;.	3.317	0.346	0.000	0.023(222)	0.02(14)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
CIDEB_LS010	chr14:24308830|24310407:-	CIDEB	cell death inducing DFFA like effector b	protein coding gene	no	ENST00000336557.9	0.849	0.533	1.541	0.615(5896)	0.816(573)	0.666(11584)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC073094.1_UP_LS0001	chr7:1150982|1250525:+	AC073094.1	-	lncRNA gene	no	.	0.942	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC069444.2_LS0006	chr3:119730377|119737366:+	AC069444.2	-	protein coding gene	no	.	1.010	0.280	0.000	0.018(171)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
RSU1P2_LS002	chr10:45106730|45106997:-	RSU1P2	Ras suppressor protein 1 pseudogene 2	pseudogene	no	ENST00000448600.5	1.364	0.000	0.731	0(2)	0(0)	0.032(562)	non tumor-specific	nAS	yes
NSDHL_LS005	chrX:152846432|152850265:+	NSDHL	NAD(P) dependent steroid dehydrogenase-like	protein coding gene	no	ENST00000440023.5;ENST00000370274.7;ENST00000432467.1	46.123	26.869	29.511	0.994(9523)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_ARMC2_LS0020	chr6:108899792|108910899:+	ARMC2	armadillo repeat containing 2	protein coding gene	no	.	1.162	0.341	0.000	0.005(46)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
UN_AC103808.3_UP_LS0004	chr18:76357855|76358498:-	AC103808.3	-	lncRNA gene	no	.	3.080	0.612	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	intron_retention	no
UN_HNRNPA1L2_UP_LS0003	chr13:52583188|52621989:+	HNRNPA1L2	heterogeneous nuclear ribonucleoprotein A1 like 2	protein coding gene	no	.	0.684	0.041	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MUC20_LS0061	chr3:195733321|195734756:+	MUC20	mucin 20, cell surface associated	protein coding gene	no	.	6.095	0.684	0.000	0.005(44)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
CACNA2D4_LS034	chr12:1875337|1878315:-	CACNA2D4	calcium voltage-gated channel auxiliary subunit alpha2delta 4	protein coding gene	no	ENST00000382722.9;ENST00000280663.12;ENST00000444595.6;ENST00000588077.5;ENST00000586184.5;ENST00000585708.5;ENST00000585732.1	5.073	0.000	0.811	0.008(81)	0(0)	0.113(1972)	non tumor-specific	exon_skip	yes
ECI1_LS003	chr16:2243224|2243369:-	ECI1	enoyl-CoA delta isomerase 1	protein coding gene	no	ENST00000562238.5	4.335	8.688	3.695	0.508(4871)	0.405(284)	0.946(16446)	non tumor-specific	alt_5prime;intron_retention;mutex_exons	yes
SBF2-AS1_LS006	chr11:9779942|9780376:+	SBF2-AS1	SBF2 antisense RNA 1	lncRNA gene	no	ENST00000650092.1;ENST00000525636.5	1.218	0.261	0.769	0.081(777)	0.095(67)	0.271(4713)	non tumor-specific	nAS	yes
UN_SUGT1_LS0007	chr13:52659249|52661478:+	SUGT1	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	protein coding gene	no	.	7.522	2.032	0.000	0.067(641)	0.034(24)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ZNF217_LS004	chr20:53569264|53575727:-	ZNF217	zinc finger protein 217	protein coding gene	yes	ENST00000437222.1;ENST00000437222.1	2.372	0.934	2.812	0.856(8206)	0.842(591)	0.822(14295)	non tumor-specific	alt_3prime;exon_skip	yes
UN_TEP1_LS0057	chr14:20408178|20408269:+	TEP1	telomerase associated protein 1	protein coding gene	no	.	3.042	0.278	0.000	0.005(45)	0.001(1)	0(0)	non tumor-specific	nAS	no
RBM25_LS024	chr14:73106081|73106196:+	RBM25	RNA binding motif protein 25	protein coding gene	no	ENST00000261973.11;ENST00000527432.5;ENST00000532683.5;ENST00000528081.5	115.230	63.022	153.864	0.992(9509)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
CSMD3_LS034	chr8:112352534|112380352:-	CSMD3	CUB and Sushi multiple domains 3	protein coding gene	no	ENST00000343508.7;ENST00000297405.9;ENST00000339701.7;ENST00000455883.2	4.037	0.268	1.354	0.046(443)	0.006(4)	0.112(1949)	non tumor-specific	nAS	yes
UN_FUBP1_LS0020	chr1:77963630|77963697:+	FUBP1	far upstream element binding protein 1	protein coding gene	yes	.	1.796	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SLIT2_LS018	chr4:20523903|20524014:+	SLIT2	slit guidance ligand 2	protein coding gene	yes	ENST00000503823.5;ENST00000504154.5;ENST00000622093.4;ENST00000273739.9;ENST00000503837.5	5.776	7.347	4.397	0.453(4338)	0.785(551)	0.795(13827)	non tumor-specific	nAS	yes
UN_CDH12P3_UP_LS0008	chr5:70090528|70120305:+	CDH12P3	cadherin 12 pseudogene 3	pseudogene	no	.	2.064	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LNCTAM34A_LS0024	chr1:9183987|9191393:+	LNCTAM34A	long non coding transcriptional activator of miR34a	lncRNA gene	no	.	2.850	0.000	0.000	0.004(39)	0(0)	0(0)	non tumor-specific	nAS	no
STX16_LS011	chr20:58652138|58667490:+	STX16	syntaxin 16	protein coding gene	no	ENST00000496003.5;ENST00000358029.8	0.247	0.290	5.532	0.851(8150)	0.856(601)	0.939(16329)	non tumor-specific	alt_5prime	yes
ERVK13-1_LS004	chr16:2663407|2673283:-	ERVK13-1	endogenous retrovirus group K13 member 1	lncRNA gene	no	ENST00000564340.1	0.091	0.097	0.772	0.145(1394)	0.107(75)	0.079(1368)	non tumor-specific	nAS	yes
UN_RTL8B_UP_LS0002	chrX:135026129|135032332:-	RTL8B	retrotransposon Gag like 8B	protein coding gene	no	.	0.554	0.053	0.000	0.002(23)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_IPO5_LS0018	chr13:98018704|98019584:+	IPO5	importin 5	protein coding gene	no	.	22.944	7.445	0.000	0.042(404)	0.051(36)	0(0)	non tumor-specific	alt_3prime	no
NXF4_LS011	chrX:102565765|102566168:+	NXF4	nuclear RNA export factor 4 pseudogene	pseudogene	no	ENST00000360035.6;ENST00000416098.1	1.655	0.000	0.775	0(3)	0(0)	0.031(538)	non tumor-specific	nAS	yes
ADAM9_LS010	chr8:39023325|39025803:+	ADAM9	ADAM metallopeptidase domain 9	protein coding gene	yes	ENST00000487273.6;ENST00000481873.7;ENST00000468065.5;ENST00000379917.7	101.861	72.582	31.328	0.963(9224)	0.986(692)	0.977(16987)	non tumor-specific	alt_3prime;exon_skip	yes
CCDC88B_LS010	chr11:64342375|64342522:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	ENST00000463837.5;ENST00000356786.9	3.400	1.177	3.662	0.517(4957)	0.516(362)	0.863(15002)	non tumor-specific	alt_3prime	yes
TNNT1_LS028	chr19:55147021|55147126:-	TNNT1	troponin T1, slow skeletal type	protein coding gene	no	ENST00000587758.5;ENST00000356783.9;ENST00000291901.12;ENST00000588426.5;ENST00000588981.5;ENST00000593046.5;ENST00000589226.5;ENST00000588147.5;ENST00000586282.1	7.253	24.117	3.973	0.335(3209)	0.195(137)	0.785(13647)	non tumor-specific	alt_5prime	yes
ACAD9_LS003	chr3:128879841|128884653:+	ACAD9	acyl-CoA dehydrogenase family member 9	protein coding gene	no	ENST00000308982.11;ENST00000514336.1;ENST00000308982.11;ENST00000514336.1	17.698	11.378	19.896	0.942(9025)	0.957(672)	0.978(16997)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SEMA3A_LS026	chr7:84489182|84492460:-	SEMA3A	semaphorin 3A	protein coding gene	no	ENST00000448879.5	0.701	0.108	1.017	0.017(161)	0.077(54)	0.154(2677)	non tumor-specific	exon_skip	yes
UN_ZNF141_LS0034	chr4:378204|383095:+	ZNF141	zinc finger protein 141	protein coding gene	no	.	2.739	0.325	0.000	0.019(184)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
UN_AL138752.2_LS0252	chr9:37974837|37977809:-	AL138752.2	-	protein coding gene	no	.	2.177	1.034	0.000	0.023(222)	0.038(27)	0(0)	non tumor-specific	nAS	no
UN_CEP72_LS0113	chr5:661295|661471:-	CEP72	centrosomal protein 72	protein coding gene	no	.	3.474	3.069	0.000	0.014(132)	0.017(12)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	no
TBC1D3L_LS017	chr17:37987521|37988950:-	TBC1D3L	TBC1 domain family member 3L	protein coding gene	no	ENST00000617678.2	0.056	0.007	0.599	0.568(5443)	0.54(379)	0(1)	non tumor-specific	nAS	yes
ZFAND3_LS006	chr6:38061775|38082392:+	ZFAND3	zinc finger AN1-type containing 3	protein coding gene	no	ENST00000287218.8;ENST00000474522.5;ENST00000373389.5	111.175	69.088	75.014	0.997(9553)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip	yes
UN_C15orf40_LS0001	chr15:82988828|82989106:-	C15orf40	chromosome 15 open reading frame 40	protein coding gene	no	.	2.982	0.259	0.000	0.008(72)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_ADA2_LS0021	chr22:17180027|17180192:+	ADA2	transcriptional adaptor 2A	protein coding gene	no	.	3.177	0.950	0.000	0.003(27)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLPP5_LS002	chr8:38264604|38266141:-	PLPP5	phospholipid phosphatase 5	protein coding gene	no	ENST00000529359.5;ENST00000424479.6;ENST00000530432.1;ENST00000524616.5;ENST00000531823.5;ENST00000534339.5;ENST00000531109.5	23.699	17.927	16.756	0.986(9444)	0.996(699)	0.975(16953)	non tumor-specific	alt_3prime	yes
DGUOK-AS1_LS002	chr2:73958207|73981109:-	DGUOK-AS1	DGUOK antisense RNA 1	lncRNA gene	no	ENST00000439192.1	1.856	0.867	1.734	0.875(8387)	0.882(619)	0.517(8980)	non tumor-specific	nAS	yes
TH_LS002	chr11:2165365|2165668:-	TH	tyrosine hydroxylase	protein coding gene	no	ENST00000381178.5;ENST00000381175.5;ENST00000333684.9;ENST00000352909.7;ENST00000324155.8	45.042	3.096	1.632	0.177(1698)	0.08(56)	0.486(8442)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_RGL1_UP_LS0018	chr1:183619549|183627402:+	RGL1	ral guanine nucleotide dissociation stimulator like 1	protein coding gene	no	.	0.488	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KRT8P28_UP_LS0002	chr1:151978253|151982666:-	KRT8P28	keratin 8 pseudogene 28	pseudogene	no	.	2.129	0.164	0.000	0.009(88)	0.001(1)	0(0)	non tumor-specific	nAS	no
FMC1_LS004	chr7:139340619|139345501:+	FMC1	formation of mitochondrial complex V assembly factor 1 homolog	protein coding gene	no	ENST00000481123.1	1.199	0.480	3.545	0.942(9029)	0.962(675)	0.9(15636)	non tumor-specific	nAS	yes
UN_MUC5B_LS0185	chr11:1247949|1248037:-	MUC5B	mucin 5B, oligomeric mucus/gel-forming	protein coding gene	no	.	3.660	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
G2E3_LS013	chr14:30593639|30597420:+	G2E3	G2/M-phase specific E3 ubiquitin protein ligase	protein coding gene	no	ENST00000206595.10;ENST00000544007.5;ENST00000438909.6;ENST00000648008.1;ENST00000553504.5;ENST00000549553.1	8.505	4.799	4.457	0.876(8397)	0.923(648)	0.936(16274)	non tumor-specific	exon_skip	yes
CYB5B_LS005	chr16:69448144|69459093:+	CYB5B	cytochrome b5 type B	protein coding gene	no	ENST00000512062.5;ENST00000307892.12;ENST00000561792.5;ENST00000568342.2	218.214	165.946	68.007	0.996(9546)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_LINC01770_LS0014	chr1:1431247|1434178:-	LINC01770	long intergenic non-protein coding RNA 1770	lncRNA gene	no	.	2.178	0.339	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ELK4_LS0022	chr1:205620838|205631632:-	ELK4	ETS transcription factor ELK4	protein coding gene	no	.	0.838	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_ALG1L2_LS0003	chr3:130088257|130091261:+	ALG1L2	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein coding gene	no	.	0.936	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
KIF5C_LS029	chr2:149020382|149023078:+	KIF5C	kinesin family member 5C	protein coding gene	no	ENST00000464066.5	0.563	0.000	0.977	0.001(10)	0(0)	0.055(954)	non tumor-specific	exon_skip	yes
UN_CNTN3_LS0018	chr3:74486631|74493012:-	CNTN3	contactin 3	protein coding gene	no	.	1.647	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BMPR1A_LS0033	chr10:86906425|86906766:-	BMPR1A	bone morphogenetic protein receptor type 1A	protein coding gene	yes	.	11.363	0.384	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_PUDPP1_UP_LS0001	chrY:15690722|15698246:-	PUDPP1	pseudouridine 5'-phosphatase pseudogene 1	pseudogene	no	.	3.395	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AP002954.1_LS0004	chr11:118700643|118708382:+	AP002954.1	-	lncRNA gene	no	.	2.138	0.198	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00211_LS004	chr2:37865278|37875743:-	LINC00211	long intergenic non-protein coding RNA 211	lncRNA gene	no	ENST00000446799.5	0.372	0.099	0.697	0(2)	0.001(1)	0.028(488)	non tumor-specific	nAS	yes
UN_ABLIM2_LS0037	chr4:8009102|8020202:-	ABLIM2	actin binding LIM protein family member 2	protein coding gene	no	.	2.328	0.172	0.000	0.006(56)	0.007(5)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
FCRL6_LS018	chr1:159815459|159815536:+	FCRL6	Fc receptor like 6	protein coding gene	no	ENST00000368106.3	2.349	1.813	1.267	0.166(1592)	0.268(188)	0.485(8432)	non tumor-specific	alt_3prime;exon_skip	yes
TOM1L2_LS003	chr17:17848859|17850893:-	TOM1L2	target of myb1 like 2 membrane trafficking protein	protein coding gene	yes	ENST00000581396.5;ENST00000478943.5;ENST00000379504.7;ENST00000318094.14;ENST00000395739.8;ENST00000535933.5;ENST00000486413.1;ENST00000542206.5	25.936	30.678	36.116	0.987(9459)	0.99(695)	0.979(17011)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
TXK_LS013	chr4:48110603|48112307:-	TXK	TXK tyrosine kinase	protein coding gene	no	ENST00000264316.8;ENST00000510457.1;ENST00000506073.1	1.033	1.539	1.231	0.251(2407)	0.346(243)	0.483(8399)	non tumor-specific	exon_skip	yes
UN_IRX3_LS0012	chr16:54285148|54285450:+	IRX3	iroquois homeobox 3	protein coding gene	no	.	4.374	0.178	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	nAS	no
C11orf80_LS030	chr11:66801102|66803995:+	C11orf80	chromosome 11 open reading frame 80	protein coding gene	no	ENST00000524551.5;ENST00000527634.5;ENST00000540737.6;ENST00000532727.5;ENST00000527352.1;ENST00000524551.5;ENST00000527634.5;ENST00000540737.6;ENST00000532727.5;ENST00000527352.1	9.864	6.049	7.191	0.969(9284)	0.947(665)	0.936(16261)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
HADHA_LS033	chr2:26239143|26244530:-	HADHA	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	protein coding gene	no	ENST00000380649.7;ENST00000492433.2;ENST00000644428.1;ENST00000645274.1;ENST00000643063.1;ENST00000646483.1;ENST00000471743.2	60.977	55.191	90.641	0.966(9257)	0.969(680)	0.979(17021)	non tumor-specific	alt_5prime	yes
UN_POLR2A_LS0242	chr17:7513453|7513475:-	POLR2A	RNA polymerase II subunit A	protein coding gene	no	.	18.550	6.045	0.000	0.021(198)	0.017(12)	0(0)	non tumor-specific	nAS	no
XRRA1_LS024	chr11:74859283|74862981:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	ENST00000340360.10	0.760	0.534	1.050	0.199(1902)	0.276(194)	0.522(9082)	non tumor-specific	exon_skip	yes
UN_AL356130.2_UP_LS0006	chr6:1005528|1130821:-	AL356130.2	-	lncRNA gene	no	.	2.815	2.856	0.000	0.004(37)	0.01(7)	0(0)	non tumor-specific	nAS	no
MYO5C_LS035	chr15:52251515|52253317:-	MYO5C	myosin VC	protein coding gene	no	ENST00000261839.11;ENST00000560809.5;ENST00000558902.5;ENST00000559459.5;ENST00000558242.1	11.151	12.077	5.201	0.875(8388)	0.922(647)	0.842(14642)	non tumor-specific	nAS	yes
GUF1_LS017	chr4:44689975|44690717:+	GUF1	GUF1 homolog, GTPase	protein coding gene	no	ENST00000506793.5;ENST00000281543.5	14.808	8.232	12.640	0.974(9329)	0.993(697)	0.972(16895)	non tumor-specific	exon_skip	yes
UN_C15orf40_LS0019	chr15:82992048|83008548:-	C15orf40	chromosome 15 open reading frame 40	protein coding gene	no	.	3.128	0.755	0.000	0.015(144)	0.033(23)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SLX1A-SULT1A3_LS012	chr16:30201106|30202690:+	SLX1A-SULT1A3	SLX1A-SULT1A3 readthrough (NMD candidate)	lncRNA gene	no	ENST00000561824.5	0.051	0.037	2.449	0.149(1428)	0.16(112)	0.87(15114)	non tumor-specific	alt_5prime;exon_skip	yes
UN_PGC_LS0017	chr6:41736965|41743273:+	PGC	progastricsin	protein coding gene	no	.	9.127	93.166	0.000	0.002(16)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_TMEM270_UP_LS0017	chr7:73769876|73831397:+	TMEM270	transmembrane protein 270	protein coding gene	no	.	13.233	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL096799.1_LS0001	chr20:7069694|7071672:+	AL096799.1	-	lncRNA gene	no	.	1.552	0.384	0.000	0.004(39)	0.001(1)	0(0)	non tumor-specific	nAS	no
PSORS1C1_LS027	chr6:31138459|31139649:+	PSORS1C1	psoriasis susceptibility 1 candidate 1	protein coding gene	no	.;.;.	0.893	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_GSAP_UP_LS0016	chr7:77533668|77533768:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	0.979	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPL10P19_UP_LS0027	chr8:8935790|8944238:+	RPL10P19	ribosomal protein L10 pseudogene 19	pseudogene	no	.	2.498	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TENT2_LS005	chr5:79613075|79613935:+	TENT2	terminal nucleotidyltransferase 2	protein coding gene	no	ENST00000502269.1	0.041	0.051	0.721	0.713(6827)	0.809(568)	0.271(4717)	non tumor-specific	intron_retention	yes
NCS1_LS004	chr9:130200982|130217832:+	NCS1	neuronal calcium sensor 1	protein coding gene	no	ENST00000372398.5;ENST00000493042.1;ENST00000630865.1	31.236	35.823	23.243	0.964(9232)	0.962(675)	0.947(16453)	non tumor-specific	exon_skip	yes
DOK7_LS006	chr4:3476531|3485539:+	DOK7	docking protein 7	protein coding gene	no	ENST00000507039.5	1.303	0.673	1.569	0.223(2139)	0.373(262)	0.291(5052)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC062004.1_UP_LS0005	chr8:77000358|77006808:+	AC062004.1	-	lncRNA gene	no	.	1.739	0.259	0.000	0.011(102)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_GPAT4_LS0032	chr8:41618977|41619221:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	.	2.974	1.480	0.000	0.266(2548)	0.15(105)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_PIK3C2B_LS0028	chr1:204442633|204443421:-	PIK3C2B	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein coding gene	no	.	3.035	0.653	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SIPA1L3_LS0134	chr19:38207723|38207858:-	SIPA1L3	signal induced proliferation associated 1 like 3	protein coding gene	no	.	2.409	2.842	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
REXO2_LS005	chr11:114440146|114440656:+	REXO2	RNA exonuclease 2	protein coding gene	no	ENST00000544827.5	1.825	0.017	0.627	0.032(309)	0.064(45)	0.037(649)	non tumor-specific	nAS	yes
HHAT_LS001	chr1:210328384|210348933:+	HHAT	hedgehog acyltransferase	protein coding gene	no	ENST00000541565.5;ENST00000413764.6	1.554	0.944	0.894	0.417(3999)	0.615(432)	0.342(5951)	non tumor-specific	exon_skip	yes
UN_YEATS2_LS0039	chr3:183762279|183773633:+	YEATS2	YEATS domain containing 2	protein coding gene	no	.	3.162	0.250	0.000	0.019(184)	0.017(12)	0(0)	non tumor-specific	exon_skip	no
ABTB1_LS033	chr3:127680185|127680269:+	ABTB1	ankyrin repeat and BTB domain containing 1	protein coding gene	no	ENST00000232744.12;ENST00000453791.6;ENST00000475042.5;ENST00000468137.5;ENST00000464431.1	44.525	33.889	134.259	0.963(9231)	0.972(682)	0.979(17021)	non tumor-specific	alt_5prime	yes
PLCB1_LS069	chr20:8963010|8965096:+	PLCB1	phospholipase C beta 1	protein coding gene	no	ENST00000635929.1;ENST00000637273.1	2.215	0.000	0.784	0.001(6)	0(0)	0.166(2891)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_WRNIP1_LS0007	chr6:2765985|2766248:-	WRNIP1	WRN helicase interacting protein 1	protein coding gene	no	.	1.424	0.122	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WNK3_LS0004	chrX:54228158|54228714:-	WNK3	WNK lysine deficient protein kinase 3	protein coding gene	no	.	2.890	0.160	0.000	0.035(334)	0.003(2)	0(0)	non tumor-specific	nAS	no
GRIA2_LS016	chr4:157317711|157321438:+	GRIA2	glutamate ionotropic receptor AMPA type subunit 2	protein coding gene	no	ENST00000507898.5;ENST00000393815.6;ENST00000645636.1;ENST00000296526.11;ENST00000471736.5;ENST00000264426.13;ENST00000323661.10	8.380	5.829	5.807	0.136(1302)	0.101(71)	0.45(7821)	non tumor-specific	exon_skip	yes
GCC2_LS015	chr2:108472899|108474789:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	ENST00000462897.2	0.078	0.083	1.116	0.643(6163)	0.664(466)	0.503(8746)	non tumor-specific	exon_skip;intron_retention	yes
OMG_LS003	chr17:31278240|31297156:-	OMG	oligodendrocyte myelin glycoprotein	protein coding gene	no	ENST00000580156.1	1.114	0.231	1.807	0.035(336)	0.006(4)	0.103(1797)	non tumor-specific	alt_3prime	yes
ZNF736_LS007	chr7:64308625|64310278:+	ZNF736	zinc finger protein 736	protein coding gene	no	ENST00000465343.2	1.008	0.000	0.679	0(4)	0(0)	0.008(133)	non tumor-specific	intron_retention	yes
UN_DDX18_UP_LS0002	chr2:117128965|117130597:+	DDX18	DEAD-box helicase 18	protein coding gene	no	.	2.032	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_VEGFA_LS0031	chr6:43774392|43777540:+	VEGFA	vascular endothelial growth factor A	protein coding gene	yes	.	3.735	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_ZBTB24_LS0003	chr6:109467734|109474282:-	ZBTB24	zinc finger and BTB domain containing 24	protein coding gene	no	.	1.712	0.177	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_MYL6B_LS0073	chr12:56157731|56157882:+	MYL6B	myosin light chain 6B	protein coding gene	no	.	165.928	5.144	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
SMPDL3A_LS003	chr6:122795890|122796824:+	SMPDL3A	sphingomyelin phosphodiesterase acid like 3A	protein coding gene	no	ENST00000368440.4;ENST00000487215.1	18.686	28.461	8.648	0.934(8946)	0.987(693)	0.948(16478)	non tumor-specific	alt_3prime;exon_skip	yes
ATR_LS031	chr3:142512470|142513501:-	ATR	serpin family A member 2 (gene/pseudogene)	protein coding gene	yes	ENST00000350721.8	12.420	6.888	6.534	0.89(8531)	0.929(652)	0.948(16478)	non tumor-specific	exon_skip	yes
DPF3_LS008	chr14:72674368|72679202:-	DPF3	double PHD fingers 3	protein coding gene	no	ENST00000556891.5	0.025	0.001	0.834	0.001(12)	0.001(1)	0.001(13)	non tumor-specific	nAS	yes
MRO_LS004	chr18:50801504|50805154:-	MRO	maestro	protein coding gene	no	ENST00000256425.6;ENST00000610511.4;ENST00000585524.5;ENST00000428869.6;ENST00000436348.6;ENST00000398439.7;ENST00000587291.5	3.805	4.103	1.992	0.206(1972)	0.409(287)	0.47(8178)	non tumor-specific	exon_skip	yes
UN_NPIPA7_UP_LS0001	chr16:16324915|16369204:+	NPIPA7	nuclear pore complex interacting protein family member A7	protein coding gene	no	.	1.558	0.897	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
CHODL_LS007	chr21:18245969|18256509:+	CHODL	chondrolectin	protein coding gene	no	ENST00000543733.5	0.990	0.117	0.730	0.015(140)	0.021(15)	0.017(289)	non tumor-specific	alt_5prime	yes
UN_AL645929.1_UP_LS0194	chr6:29896822|29944294:-	AL645929.1	-	pseudogene	no	.	43.817	2.344	0.000	0.007(69)	0.003(2)	0(0)	non tumor-specific	nAS	no
GABARAPL1_LS013	chr12:10213219|10220440:+	GABARAPL1	GABA type A receptor associated protein like 1	protein coding gene	no	ENST00000545047.5;ENST00000541453.1;ENST00000545047.5;ENST00000541453.1	0.268	0.487	1.269	0.392(3751)	0.591(415)	0.621(10796)	non tumor-specific	alt_5prime;exon_skip	yes
UN_SYCE2_LS0016	chr19:12900690|12902399:+	SYCE2	synaptonemal complex central element protein 2	protein coding gene	no	.	2.313	1.950	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
LINC00928_LS004	chr15:89510123|89523581:-	LINC00928	long intergenic non-protein coding RNA 928	lncRNA gene	no	ENST00000561108.5;ENST00000559967.1	0.014	0.000	0.799	0.013(124)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_MIR4477B_UP_LS0005	chr9:63815807|63817578:+	MIR4477B	microRNA 4477b	small non-coding RNA gene	no	.	1.029	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AC025871.1_LS002	chr8:28449031|28455624:+	AC025871.1	-	lncRNA gene	no	ENST00000523935.1	3.476	0.000	0.798	0.028(271)	0(0)	0.008(137)	non tumor-specific	nAS	yes
USP46_LS005	chr4:52604584|52610541:-	USP46	ubiquitin specific peptidase 46	protein coding gene	no	ENST00000441222.7;ENST00000451218.6;ENST00000503060.5;ENST00000514536.5;ENST00000508499.5	16.051	14.606	8.950	0.898(8606)	0.933(655)	0.947(16468)	non tumor-specific	nAS	yes
ADGRF5_LS016	chr6:46872013|46878202:-	ADGRF5	adhesion G protein-coupled receptor F5	protein coding gene	no	ENST00000283296.11;ENST00000265417.7	17.611	37.914	10.262	0.77(7375)	0.912(640)	0.886(15394)	non tumor-specific	alt_5prime;exon_skip	yes
MYLKP1_LS001	chr3:75329966|75336099:-	MYLKP1	myosin light chain kinase pseudogene 1	pseudogene	no	ENST00000509077.1	0.302	0.133	0.594	0(1)	0.001(1)	0.003(44)	non tumor-specific	nAS	yes
UN_DPEP1_LS0010	chr16:89620237|89630305:+	DPEP1	dipeptidase 1	protein coding gene	no	.	1.141	0.514	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ZNF146_LS0021	chr19:36236330|36236412:-	ZNF146	zinc finger protein 146	protein coding gene	no	.	2.532	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
ZBED9_LS008	chr6:28588119|28616025:-	ZBED9	zinc finger BED-type containing 9	protein coding gene	no	ENST00000530247.1	0.093	0.000	0.925	0(1)	0(0)	0(6)	non tumor-specific	nAS	yes
UN_ZNF282_LS0012	chr7:149210704|149211653:+	ZNF282	zinc finger protein 282	protein coding gene	no	.	2.269	0.067	0.000	0.005(44)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AL354949.1_LS001	chr1:71571000|71573434:+	AL354949.1	-	lncRNA gene	no	ENST00000446438.1	0.330	0.118	0.800	0.084(804)	0.121(85)	0.101(1758)	non tumor-specific	nAS	yes
ALG13_LS024	chrX:111689197|111708965:+	ALG13	ALG13 UDP-N-acetylglucosaminyltransferase subunit	protein coding gene	no	ENST00000470704.1	0.268	0.409	1.031	0.313(3003)	0.323(227)	0.475(8252)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_AL162511.1_LS0004	chr14:36215515|36235320:+	AL162511.1	-	lncRNA gene	no	.	2.518	1.411	0.000	0.035(339)	0.094(66)	0(0)	non tumor-specific	nAS	no
UN_AL132656.2_UP_LS0013	chr10:79559484|79610970:+	AL132656.2	-	lncRNA gene	no	.	138.856	47.695	0.000	0.007(67)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_IL1RN_LS0007	chr2:113127550|113127689:+	IL1RN	interleukin 1 receptor antagonist	protein coding gene	no	.	2.159	1.330	0.000	0.09(862)	0.188(132)	0(0)	non tumor-specific	nAS	no
UN_NRSN2-AS1_LS0031	chr20:346454|347419:-	NRSN2-AS1	NRSN2 antisense RNA 1	lncRNA gene	no	.	3.456	0.705	0.000	0.012(119)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_HLA-DQA1_UP_LS0008	chr6:32445045|32545688:+	HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	protein coding gene	no	.	1.080	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CNTLN_LS0008	chr9:17236588|17265527:+	CNTLN	centlein	protein coding gene	no	.	1.362	0.000	0.000	0.003(30)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM258_LS008	chr11:61789235|61789799:-	TMEM258	transmembrane protein 258	protein coding gene	no	.;.	38.039	0.000	0.000	0.001(6)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
MAN2A1_LS009	chr5:109781598|109784744:+	MAN2A1	mannosidase alpha class 2A member 1	protein coding gene	no	ENST00000261483.4	19.229	17.272	7.205	0.88(8432)	0.97(681)	0.945(16426)	non tumor-specific	alt_3prime	yes
UN_AC040174.1_UP_LS0006	chr16:63130986|63305347:-	AC040174.1	-	lncRNA gene	no	.	1.799	0.199	0.000	0.012(115)	0.019(13)	0(0)	non tumor-specific	nAS	no
ETFB_LS008	chr19:51354308|51366270:-	ETFB	electron transfer flavoprotein subunit beta	protein coding gene	no	ENST00000309244.8;ENST00000596253.1;ENST00000593992.1	226.136	179.533	165.343	0.992(9505)	0.991(696)	0.979(17021)	non tumor-specific	nAS	yes
SEC23A_LS014	chr14:39085906|39086929:-	SEC23A	Sec23 homolog A, COPII coat complex component	protein coding gene	no	ENST00000537403.5;ENST00000307712.10;ENST00000545328.6	27.217	25.008	29.503	0.955(9154)	0.987(693)	0.978(16991)	non tumor-specific	exon_skip	yes
UN_C17orf97_LS0034	chr17:413623|413684:+	C17orf97	chromosome 17 open reading frame 97	protein coding gene	no	.	9.981	4.245	0.000	0.031(299)	0.04(28)	0(0)	non tumor-specific	intron_retention	no
UN_SRSF4_LS0025	chr1:29165357|29165890:-	SRSF4	serine and arginine rich splicing factor 4	protein coding gene	no	.	10.889	0.087	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	exon_skip;intron_retention	no
LINC02027_LS001	chr3:80993927|81095112:+	LINC02027	long intergenic non-protein coding RNA 2027	lncRNA gene	no	ENST00000482617.1	0.857	2.474	14.242	0.1(957)	0.214(150)	0.027(470)	non tumor-specific	nAS	yes
ACAD10_LS048	chr12:111755745|111756212:+	ACAD10	acyl-CoA dehydrogenase family member 10	protein coding gene	no	ENST00000508303.5	0.752	0.428	1.073	0.25(2399)	0.256(180)	0.616(10704)	non tumor-specific	alt_3prime;intron_retention	yes
GKN1_LS002	chr2:68977548|68977637:+	GKN1	gastrokine 1	protein coding gene	yes	ENST00000377938.2;ENST00000478888.1	89.565	1697.994	1.348	0.058(555)	0.077(54)	0.345(6002)	non tumor-specific	exon_skip	yes
AGTPBP1_LS006	chr9:85586960|85588298:-	AGTPBP1	ATP/GTP binding protein 1	protein coding gene	no	ENST00000376083.7;ENST00000337006.8;ENST00000357081.7;ENST00000628899.1	22.518	14.758	19.067	0.97(9297)	0.981(689)	0.979(17021)	non tumor-specific	exon_skip	yes
GPR107_LS003	chr9:130076462|130077299:+	GPR107	G protein-coupled receptor 107	protein coding gene	no	ENST00000372406.5;ENST00000347136.10;ENST00000372410.7;ENST00000493417.5;ENST00000610997.1	23.057	16.983	13.317	0.951(9108)	0.974(684)	0.975(16942)	non tumor-specific	exon_skip	yes
UN_PRR36_LS0145	chr19:7872486|7872686:-	PRR36	proline rich 36	protein coding gene	no	.	3.096	0.000	0.000	0.004(41)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
UN_HNRNPA1_LS0049	chr12:54284844|54284869:-	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	.	8.694	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MTM1_LS002	chrX:150592677|150596498:+	MTM1	myotubularin 1	protein coding gene	no	ENST00000370396.6;ENST00000424519.1;ENST00000370393.5;ENST00000306167.11;ENST00000490530.1	6.005	5.902	4.467	0.859(8232)	0.966(678)	0.929(16156)	non tumor-specific	exon_skip	yes
UN_SORT1_LS0040	chr1:109313627|109313705:+	SORT1	sortilin 1	protein coding gene	no	.	0.810	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VPS13C_LS032	chr15:61913415|61915633:-	VPS13C	vacuolar protein sorting 13 homolog C	protein coding gene	no	ENST00000644861.1;ENST00000249837.7;ENST00000261517.9;ENST00000650094.1;ENST00000645819.1;ENST00000395896.8;ENST00000649766.1;ENST00000395898.3;ENST00000558338.1	15.970	12.135	7.005	0.868(8317)	0.959(673)	0.942(16382)	non tumor-specific	nAS	yes
CEACAM8_LS001	chr19:42581353|42583206:-	CEACAM8	CEA cell adhesion molecule 8	protein coding gene	no	ENST00000244336.9	3.398	0.876	1.650	0.023(224)	0.077(54)	0.141(2451)	non tumor-specific	nAS	yes
BDP1_LS025	chr5:71522490|71522756:+	BDP1	protein tyrosine phosphatase non-receptor type 18	protein coding gene	no	ENST00000358731.8;ENST00000508917.6	7.895	5.386	5.350	0.762(7299)	0.89(625)	0.924(16068)	non tumor-specific	nAS	yes
MTMR1_LS028	chrX:150737448|150744361:+	MTMR1	myotubularin related protein 1	protein coding gene	no	ENST00000485376.5;ENST00000370390.7;ENST00000445323.6;ENST00000488357.1;ENST00000370387.2	27.685	15.441	19.915	0.98(9392)	0.996(699)	0.978(17002)	non tumor-specific	exon_skip	yes
AL390719.1_LS001	chr1:1059846|1060280:+	AL390719.1	-	pseudogene	no	ENST00000427998.5	0.137	0.115	0.729	0.191(1828)	0.084(59)	0.09(1560)	non tumor-specific	nAS	yes
UN_EPB41L1_LS0053	chr20:36121816|36122683:+	EPB41L1	erythrocyte membrane protein band 4.1 like 1	protein coding gene	no	.	2.168	0.939	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
MSH6_LS029	chr2:47805027|47805618:+	MSH6	mutS homolog 6	protein coding gene	no	ENST00000614496.4;ENST00000540021.5;ENST00000622629.4;ENST00000445503.5;ENST00000234420.9;ENST00000538136.1	118.843	43.017	35.048	0.997(9553)	0.997(700)	0.979(17011)	non tumor-specific	intron_retention	yes
STX2_LS010	chr12:130807090|130808631:-	STX2	syntaxin 2	protein coding gene	no	ENST00000261653.10;ENST00000392373.6;ENST00000344271.5	16.933	12.504	18.855	0.863(8270)	0.959(673)	0.975(16951)	non tumor-specific	exon_skip	yes
FMN2_LS014	chr1:240235895|240257945:+	FMN2	formin 2	protein coding gene	no	ENST00000463398.5	0.045	0.017	0.887	0.013(127)	0.007(5)	0.021(362)	non tumor-specific	nAS	yes
ARAP2_LS048	chr4:36212487|36213243:-	ARAP2	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein coding gene	no	ENST00000303965.8;ENST00000508066.1	7.987	6.498	4.558	0.679(6501)	0.83(583)	0.845(14692)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RPSAP68_UP_LS0610	chr21:8401527|8445510:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	160.208	135.170	0.000	0.001(12)	0.004(3)	0(0)	non tumor-specific	nAS	no
VWA3B_LS027	chr2:98212028|98217846:+	VWA3B	von Willebrand factor A domain containing 3B	protein coding gene	no	ENST00000448638.5;ENST00000409460.5;ENST00000477737.5;ENST00000416277.5;ENST00000489968.5;ENST00000489630.5;ENST00000473149.5	2.232	2.624	1.018	0.073(697)	0.137(96)	0.17(2950)	non tumor-specific	exon_skip	yes
UN_GPATCH4_UP_LS0001	chr1:156615077|156616483:-	GPATCH4	G-patch domain containing 4	protein coding gene	no	.	3.127	0.175	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_BRWD1_LS0053	chr21:39312900|39313443:-	BRWD1	bromodomain and WD repeat domain containing 1	protein coding gene	no	.	0.632	0.202	0.000	0.002(22)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_CORO1A_LS0001	chr16:30183013|30183620:+	CORO1A	coronin 1A	protein coding gene	no	.	0.804	0.284	0.000	0.041(392)	0.057(40)	0(0)	non tumor-specific	exon_skip	no
UN_DNAJB2_LS0039	chr2:219286411|219286468:-	DNAJB2	DnaJ heat shock protein family (Hsp40) member B2	protein coding gene	no	.	5.584	0.067	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	nAS	no
BPTF_LS025	chr17:67918838|67920015:+	BPTF	bromodomain PHD finger transcription factor	protein coding gene	no	ENST00000544778.6;ENST00000321892.8;ENST00000306378.10;ENST00000644067.1;ENST00000342579.8;ENST00000424123.7	34.192	17.529	20.298	0.863(8268)	0.952(668)	0.975(16953)	non tumor-specific	exon_skip	yes
UN_ARID1B_LS0052	chr6:157147478|157147735:-	ARID1B	AT-rich interaction domain 1B	protein coding gene	no	.	1.402	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
PKD1P1_LS050	chr16:16329240|16329365:+	PKD1P1	polycystin 1, transient receptor potential channel interacting pseudogene 1	protein coding gene	no	ENST00000458669.1	18.543	10.618	35.699	0.835(7999)	0.838(588)	0.936(16266)	non tumor-specific	alt_5prime	yes
UN_FAM155A_UP_LS0002	chr13:108025312|108026103:-	FAM155A	family with sequence similarity 155 member A	protein coding gene	no	.	6.107	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FABP5P3_LS0001	chr7:152435787|152436512:-	FABP5P3	fatty acid binding protein 5 pseudogene 3	pseudogene	no	.	1.267	0.351	0.000	0.042(400)	0.047(33)	0(0)	non tumor-specific	nAS	no
UN_PARP10_LS0208	chr8:143991804|143991950:+	PARP10	poly(ADP-ribose) polymerase family member 10	protein coding gene	no	.	15.379	0.669	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
UN_KRT7_LS0027	chr12:52233410|52233510:-	KRT7	keratin 7	protein coding gene	no	.	3.555	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP1R12B_LS0097	chr1:202587712|202587798:-	PPP1R12B	protein phosphatase 1 regulatory subunit 12B	protein coding gene	no	.	1.016	0.937	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MYEOV_LS0014	chr11:69295942|69296067:-	MYEOV	myeloma overexpressed	protein coding gene	no	.	4.482	0.329	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPSAP58_LS0010	chr19:23827322|23827443:-	RPSAP58	ribosomal protein SA pseudogene 58	pseudogene	no	.	1.423	0.986	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
CSN1S1_LS017	chr4:69942063|69942536:+	CSN1S1	casein alpha s1	protein coding gene	no	ENST00000246891.8;ENST00000507763.5;ENST00000507772.5;ENST00000505782.5	7.802	0.965	1.380	0.013(127)	0.083(58)	0.181(3147)	non tumor-specific	exon_skip	yes
UN_TMCO3_LS0022	chr13:113510424|113516043:+	TMCO3	transmembrane and coiled-coil domains 3	protein coding gene	no	.	2.721	0.000	0.000	0.005(45)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_MYO18A_LS0110	chr17:29124688|29165942:-	MYO18A	myosin XVIIIA	protein coding gene	no	.	0.675	0.667	0.000	0.01(97)	0.009(6)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
GIGYF2_LS042	chr2:232765545|232765892:+	GIGYF2	GRB10 interacting GYF protein 2	protein coding gene	no	ENST00000475530.1	0.202	0.028	0.638	0.003(24)	0.009(6)	0.001(26)	non tumor-specific	intron_retention	yes
UN_AC073862.4_UP_LS0001	chr12:130953258|130953928:+	AC073862.4	-	lncRNA gene	no	.	0.604	0.418	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC087289.3_LS0004	chr17:75898897|75899162:+	AC087289.3	-	protein coding gene	no	.	1.062	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HEATR1_LS0009	chr1:236550291|236550414:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	.	1.270	0.104	0.000	0.02(189)	0.007(5)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
FXYD5_LS026	chr19:35166428|35169566:+	FXYD5	FXYD domain containing ion transport regulator 5	protein coding gene	no	ENST00000588699.5	0.898	1.263	0.785	0.255(2444)	0.155(109)	0.101(1760)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC083967.1_LS0004	chr8:68850045|68850884:-	AC083967.1	-	lncRNA gene	no	.	22.941	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF705A_LS007	chr12:8177185|8188472:+	ZNF705A	zinc finger protein 705A	protein coding gene	no	ENST00000398526.2	0.095	0.016	0.684	0.009(91)	0.01(7)	0.002(34)	non tumor-specific	nAS	yes
UN_MS4A12_LS0005	chr11:60506601|60506927:-	MS4A12	membrane spanning 4-domains A12	protein coding gene	no	.	3.802	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
AC103736.1_LS002	chr11:45355602|45356396:+	AC103736.1	-	lncRNA gene	no	ENST00000524488.1	0.235	0.189	1.217	0.331(3169)	0.493(346)	0.357(6198)	non tumor-specific	nAS	yes
UN_CFAP157_LS0011	chr9:127713206|127713532:+	CFAP157	cilia and flagella associated protein 157	protein coding gene	no	.	2.388	0.586	0.000	0.009(87)	0.021(15)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
GC_LS013	chr4:71765585|71768301:-	GC	GC vitamin D binding protein	protein coding gene	no	ENST00000503472.5	99.189	81.489	4.254	0.053(512)	0.145(102)	0.024(423)	non tumor-specific	alt_3prime	yes
UN_HAPLN2_LS0004	chr1:156621952|156622951:-	HAPLN2	hyaluronan and proteoglycan link protein 2	protein coding gene	no	.	2.985	0.274	0.000	0.014(131)	0.03(21)	0(0)	non tumor-specific	nAS	no
SLC6A13_LS028	chr12:238010|238171:-	SLC6A13	solute carrier family 6 member 13	protein coding gene	no	ENST00000542272.5	0.137	0.080	1.303	0.063(604)	0.128(90)	0.166(2886)	non tumor-specific	exon_skip;intron_retention	yes
UN_PCBP3_LS0009	chr21:45744337|45755417:+	PCBP3	poly(rC) binding protein 3	protein coding gene	no	.	2.007	0.034	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ADAM8_LS030	chr10:133274235|133275484:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7;ENST00000537099.5;ENST00000463298.5;ENST00000559180.1	9.139	2.599	2.514	0.753(7215)	0.682(479)	0.829(14402)	non tumor-specific	exon_skip	yes
ARIH2_LS036	chr3:48943533|48945136:+	ARIH2	ariadne RBR E3 ubiquitin protein ligase 2	protein coding gene	no	ENST00000472640.1	0.021	0.014	0.882	0.339(3249)	0.379(266)	0.27(4691)	non tumor-specific	exon_skip	yes
XRCC1_LS014	chr19:43553683|43554646:-	XRCC1	X-ray repair cross complementing 1	protein coding gene	no	ENST00000262887.9;ENST00000543982.5;ENST00000597811.5;ENST00000595789.5;ENST00000598165.5;ENST00000599693.5;ENST00000594107.1	52.877	26.293	40.600	0.994(9521)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
SPIDR_LS012	chr8:47291137|47293867:+	SPIDR	scaffold protein involved in DNA repair	protein coding gene	no	ENST00000297423.8;ENST00000541342.2;ENST00000518074.5;ENST00000522900.5;ENST00000521550.5;ENST00000524126.5;ENST00000519661.5;ENST00000524141.5;ENST00000524033.5;ENST00000522117.5;ENST00000521214.5;ENST00000521798.1	19.715	11.512	23.360	0.98(9385)	0.987(693)	0.978(16992)	non tumor-specific	alt_5prime;exon_skip	yes
UN_FER1L4_LS0059	chr20:35584093|35591962:-	FER1L4	fer-1 like family member 4 (pseudogene)	pseudogene	yes	.	1.829	0.434	0.000	0.007(65)	0.001(1)	0(0)	non tumor-specific	nAS	no
METTL15_LS009	chr11:28113604|28290206:+	METTL15	methyltransferase like 15	protein coding gene	no	ENST00000532947.2	1.526	0.000	0.653	0.001(5)	0(0)	0.07(1209)	non tumor-specific	exon_skip	yes
MYO9A_LS023	chr15:71888116|71893111:-	MYO9A	myosin IXA	protein coding gene	no	.;.	0.615	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
TECR_LS002	chr19:14529711|14533933:+	TECR	trans-2,3-enoyl-CoA reductase	protein coding gene	no	ENST00000598298.5	0.004	0.000	0.907	0.02(189)	0.011(8)	0.34(5909)	non tumor-specific	exon_skip;mutex_exons	yes
UN_UBBP4_LS0117	chr17:22204606|22204737:+	UBBP4	ubiquitin B pseudogene 4	pseudogene	no	.	6.837	0.482	0.000	0.002(15)	0.003(2)	0(0)	non tumor-specific	nAS	no
LMF2_LS015	chr22:50506666|50506782:-	LMF2	lipase maturation factor 2	protein coding gene	no	ENST00000474879.6;ENST00000216080.5;ENST00000505981.5;ENST00000507607.1	58.106	32.204	62.706	0.99(9485)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
GCGR_LS006	chr17:81810932|81811010:+	GCGR	glucagon receptor	protein coding gene	no	ENST00000400723.7;ENST00000570996.5;ENST00000574283.2	10.000	8.766	1.482	0.103(984)	0.274(192)	0.357(6207)	non tumor-specific	alt_3prime;alt_5prime	yes
OTOA_LS021	chr16:21722978|21726523:+	OTOA	otoancorin	protein coding gene	no	ENST00000646100.1;ENST00000647277.1;ENST00000286149.8;ENST00000388958.8;ENST00000388956.8;ENST00000388957.3;ENST00000563871.5	2.641	0.222	0.812	0.03(290)	0.004(3)	0.135(2345)	non tumor-specific	nAS	yes
OBSCN_LS022	chr1:228264391|228273272:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	.;.	2.307	0.000	0.000	0.001(8)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
PCNX1_LS036	chr14:71052012|71053297:+	PCNX1	pecanex 1	protein coding gene	no	ENST00000556849.2	0.281	0.046	0.716	0.046(439)	0.04(28)	0.208(3620)	non tumor-specific	exon_skip	yes
UN_PELP1_LS0082	chr17:4675847|4676036:-	PELP1	proline, glutamate and leucine rich protein 1	protein coding gene	yes	.	6.447	0.716	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_WASH3P_LS0012	chr15:101966223|101970675:+	WASH3P	WASP family homolog 3, pseudogene	pseudogene	no	.	7.438	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
IQSEC1_LS007	chr3:12909434|12911629:-	IQSEC1	IQ motif and Sec7 domain ArfGEF 1	protein coding gene	no	ENST00000273221.8;ENST00000646269.1;ENST00000618604.4;ENST00000648114.1;ENST00000613206.1;ENST00000648386.1	32.537	37.077	30.144	0.947(9076)	0.981(689)	0.979(17018)	non tumor-specific	nAS	yes
BST2_LS004	chr19:17403824|17404129:-	BST2	bone marrow stromal cell antigen 2	protein coding gene	no	ENST00000252593.6;ENST00000533098.5;ENST00000527220.1	633.811	267.758	158.498	0.997(9555)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC6A1_LS008	chr3:11015733|11017120:+	SLC6A1	solute carrier family 6 member 1	protein coding gene	no	ENST00000642767.1;ENST00000645776.1;ENST00000646035.1;ENST00000644314.1;ENST00000646060.1;ENST00000646088.1	0.530	1.858	1.736	0.164(1571)	0.168(118)	0.452(7849)	non tumor-specific	alt_3prime	yes
SLC35A1_LS015	chr6:87508437|87508439:+	SLC35A1	solute carrier family 35 member A1	protein coding gene	no	ENST00000622775.3	2.730	0.000	0.634	0(1)	0(0)	0.025(435)	non tumor-specific	nAS	yes
UN_CLDN16_UP_LS0010	chr3:190295467|190306539:+	CLDN16	claudin 16	protein coding gene	no	.	1.585	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RASSF1_LS0013	chr3:50332185|50337173:-	RASSF1	Ras association domain family member 1	protein coding gene	yes	.	2.701	0.102	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_RNF103-CHMP3_LS0036	chr2:86605433|86612159:-	RNF103-CHMP3	RNF103-CHMP3 readthrough	protein coding gene	no	.	5.331	0.920	0.000	0.008(73)	0.01(7)	0(0)	non tumor-specific	nAS	no
UN_FAM182B_LS0089	chr20:25853685|25853860:-	FAM182B	family with sequence similarity 182 member B	lncRNA gene	no	.	0.682	0.033	0.000	0.004(35)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCAPER_LS002	chr15:76351288|76353949:-	SCAPER	S-phase cyclin A associated protein in the ER	protein coding gene	no	ENST00000563290.5;ENST00000538941.6;ENST00000324767.11;ENST00000562948.1;ENST00000563246.1	29.405	21.109	30.147	0.99(9483)	0.996(699)	0.979(17014)	non tumor-specific	nAS	yes
SMAGP_LS006	chr12:51251583|51269245:-	SMAGP	small cell adhesion glycoprotein	protein coding gene	no	ENST00000380103.4	0.058	0.327	0.698	0.116(1111)	0.098(69)	0.121(2107)	non tumor-specific	exon_skip;mutex_exons	yes
SPATS2_LS026	chr12:49484669|49489465:+	SPATS2	spermatogenesis associated serine rich 2	protein coding gene	no	ENST00000550997.5;ENST00000549538.5;ENST00000549412.5;ENST00000548710.5;ENST00000549375.5;ENST00000553127.5;ENST00000321898.10;ENST00000551540.5;ENST00000552918.5	16.271	8.746	10.405	0.972(9315)	0.972(682)	0.963(16736)	non tumor-specific	exon_skip	yes
SEPT4_LS042	chr17:58526978|58527826:-	SEPT4	septin 4	protein coding gene	yes	ENST00000583114.5;ENST00000580791.1;ENST00000582248.1	0.010	0.086	31.576	0.143(1370)	0.131(92)	0.191(3328)	non tumor-specific	alt_5prime;intron_retention	yes
ANXA1_LS005	chr9:73151924|73158522:+	ANXA1	annexin A1	protein coding gene	yes	ENST00000257497.10;ENST00000468639.5;ENST00000257497.10;ENST00000468639.5;ENST00000257497.10;ENST00000468639.5	89.772	77.918	149.690	0.972(9315)	0.969(680)	0.978(17002)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
RRBP1_LS048	chr20:17658920|17659575:-	RRBP1	ribosome binding protein 1	protein coding gene	no	.;.;.	25.440	5.658	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
USP24_LS026	chr1:55097172|55097598:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000294383.6	17.755	12.446	11.987	0.852(8160)	0.943(662)	0.971(16878)	non tumor-specific	alt_3prime	yes
UN_IGHG1_LS0011	chr14:105741504|105741634:+	IGHG1	immunoglobulin heavy constant gamma 1 (G1m marker)	no	no	.	231.165	1.607	0.000	0.003(24)	0.001(1)	0(0)	non tumor-specific	nAS	no
CDC14A_LS015	chr1:100455492|100462651:+	CDC14A	cell division cycle 14A	protein coding gene	no	ENST00000644844.1;ENST00000635056.2;ENST00000647203.1;ENST00000647005.1;ENST00000644676.1;ENST00000361544.11;ENST00000336454.4;ENST00000370124.8;ENST00000644813.1	6.656	6.600	3.865	0.745(7142)	0.892(626)	0.907(15759)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NBL1_LS0068	chr1:19657549|19658325:-	NBL1	NBL1, DAN family BMP antagonist	protein coding gene	no	.	4.098	2.277	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGAX_LS017	chr16:31363075|31363165:+	ITGAX	integrin subunit alpha X	protein coding gene	no	ENST00000268296.8;ENST00000562522.2;ENST00000571644.1	5.470	3.850	2.753	0.766(7338)	0.568(399)	0.808(14038)	non tumor-specific	alt_3prime	yes
UN_XPNPEP3_LS0013	chr22:40861835|40868999:+	XPNPEP3	X-prolyl aminopeptidase 3	protein coding gene	no	.	3.134	1.302	0.000	0.117(1124)	0.123(86)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	no
UN_ZNF559-ZNF177_LS0027	chr19:9352004|9354264:+	ZNF559-ZNF177	ZNF559-ZNF177 readthrough	protein coding gene	no	.	8.575	0.143	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC087289.1_UP_LS0001	chr17:75844307|75844734:-	AC087289.1	-	lncRNA gene	no	.	1.290	0.414	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
DEPTOR_LS010	chr8:120003111|120006805:+	DEPTOR	DEP domain containing MTOR interacting protein	protein coding gene	no	ENST00000523492.5;ENST00000286234.5;ENST00000518057.1	36.772	52.231	13.281	0.969(9287)	0.997(700)	0.948(16486)	non tumor-specific	exon_skip	yes
ITGA4_LS013	chr2:181482651|181485881:+	ITGA4	integrin subunit alpha 4	protein coding gene	no	ENST00000397033.6;ENST00000465522.5;ENST00000233573.6	18.297	4.133	2.711	0.666(6379)	0.783(550)	0.771(13406)	non tumor-specific	nAS	yes
UN_CHI3L1_LS0007	chr1:203179129|203179167:+	CHI3L1	chitinase 3 like 1	protein coding gene	no	.	97.869	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
AC009237.16_LS001	chr2:95588560|95589160:+	AC009237.16	-	pseudogene	no	ENST00000612987.1	0.033	0.016	0.674	0.001(6)	0.004(3)	0.001(9)	non tumor-specific	nAS	yes
C5AR1_LS004	chr19:47307510|47307725:+	C5AR1	complement C5a receptor 1	protein coding gene	no	ENST00000595501.5	1.457	0.448	1.333	0.167(1604)	0.177(124)	0.526(9139)	non tumor-specific	exon_skip	yes
AC078950.1_LS003	chr12:11431562|11435126:-	AC078950.1	-	lncRNA gene	no	ENST00000542062.5;ENST00000539178.5	2.350	0.000	1.031	0.001(10)	0(0)	0.025(442)	non tumor-specific	nAS	yes
UN_AL136018.1_LS0017	chr14:24623470|24638595:+	AL136018.1	-	lncRNA gene	no	.	1.712	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
TFRC_LS021	chr3:196072152|196073930:-	TFRC	transferrin receptor	protein coding gene	no	ENST00000420415.5;ENST00000360110.8;ENST00000392396.7	51.124	29.460	14.013	0.927(8886)	0.97(681)	0.968(16830)	non tumor-specific	exon_skip;mutex_exons	yes
UN_AL691447.2_LS0006	chr9:94347582|94359763:-	AL691447.2	-	lncRNA gene	no	.	1.091	0.151	0.000	0.015(144)	0.013(9)	0(0)	non tumor-specific	nAS	no
CASP14_LS004	chr19:15053958|15055158:+	CASP14	caspase 14	protein coding gene	no	ENST00000427043.3	20.051	3.215	1.062	0.14(1343)	0.077(54)	0.254(4410)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ZNF222_UP_LS0001	chr19:43988558|44008790:+	ZNF222	zinc finger protein 222	protein coding gene	no	.	1.549	0.232	0.000	0.006(62)	0.003(2)	0(0)	non tumor-specific	nAS	no
CLP1_LS003	chr11:57657860|57659430:+	CLP1	cleavage factor polyribonucleotide kinase subunit 1	protein coding gene	no	ENST00000533905.1	0.105	0.040	0.607	0.088(839)	0.07(49)	0.046(796)	non tumor-specific	alt_3prime	yes
UN_DHRSX_UP_LS0021	chrX:2570166|2574096:-	DHRSX	dehydrogenase/reductase X-linked	protein coding gene	no	.	1.291	0.193	0.000	0.01(96)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_CNGB3_LS0013	chr8:86561237|86561313:-	CNGB3	cyclic nucleotide gated channel subunit beta 3	protein coding gene	no	.	1.216	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
TNNC2_LS003	chr20:45824406|45824495:-	TNNC2	troponin C2, fast skeletal type	protein coding gene	no	ENST00000372555.7;ENST00000372557.1	4.182	14.014	9.450	0.464(4443)	0.707(496)	0.956(16613)	non tumor-specific	nAS	yes
TMEM260_LS004	chr14:56580074|56585001:+	TMEM260	transmembrane protein 260	protein coding gene	no	ENST00000261556.10;ENST00000557657.5;ENST00000556975.5;ENST00000555497.5;ENST00000557626.5;ENST00000539559.6;ENST00000538838.5	2.140	1.348	2.959	0.839(8036)	0.923(648)	0.897(15589)	non tumor-specific	nAS	yes
UN_ATF6_LS0038	chr1:161958710|161962631:+	ATF6	activating transcription factor 6	protein coding gene	no	.	3.424	1.029	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
RHEB_LS008	chr7:151491014|151517891:-	RHEB	RHEB pseudogene 1	protein coding gene	no	ENST00000470370.1	0.014	0.007	0.785	0.165(1577)	0.132(93)	0.252(4383)	non tumor-specific	nAS	yes
UN_LINC01267_UP_LS0017	chr3:14394539|14396245:-	LINC01267	long intergenic non-protein coding RNA 1267	lncRNA gene	no	.	1.686	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_NBPF15_LS0019	chr1:144437109|144439829:-	NBPF15	NBPF member 15	protein coding gene	no	.	2.109	0.168	0.000	0.005(48)	0.001(1)	0(0)	non tumor-specific	nAS	no
ADCY8_LS010	chr8:130849803|130867846:-	ADCY8	adenylate cyclase 8	protein coding gene	no	ENST00000286355.9	8.746	2.570	7.320	0.157(1504)	0.125(88)	0.263(4571)	non tumor-specific	exon_skip	yes
GATA5_LS003	chr20:62465921|62466426:-	GATA5	GATA binding protein 5	protein coding gene	yes	ENST00000252997.2	7.244	6.351	2.091	0.179(1711)	0.432(303)	0.358(6220)	non tumor-specific	nAS	yes
NUDT14_LS003	chr14:105175987|105176534:-	NUDT14	nudix hydrolase 14	protein coding gene	no	ENST00000551024.5;ENST00000550002.1	1.490	0.839	2.662	0.858(8219)	0.877(616)	0.822(14293)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	yes
IGSF22_LS006	chr11:18707996|18709387:-	IGSF22	immunoglobulin superfamily member 22	protein coding gene	no	ENST00000319338.6	0.413	0.000	0.874	0(4)	0(0)	0.034(592)	non tumor-specific	exon_skip	yes
UN_USP10_LS0008	chr16:84728104|84728748:-	USP10	ubiquitin specific peptidase 32	protein coding gene	no	.	2.849	0.494	0.000	0.012(112)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_SPINT2_LS0037	chr19:38264834|38291905:-	SPINT2	serine peptidase inhibitor, Kunitz type 2	protein coding gene	yes	.	12.273	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CYC1_LS0046	chr8:144096753|144097038:-	CYC1	cytochrome c1	protein coding gene	no	.	3.361	1.077	0.000	0.018(174)	0.014(10)	0(0)	non tumor-specific	nAS	no
ANKS6_LS014	chr9:98756606|98768081:-	ANKS6	ankyrin repeat and sterile alpha motif domain containing 6	protein coding gene	no	ENST00000444472.5	5.293	3.148	4.946	0.791(7579)	0.799(561)	0.93(16168)	non tumor-specific	alt_3prime;exon_skip	yes
UN_LIFR_UP_LS0008	chr5:38686123|38743927:-	LIFR	LIF receptor subunit alpha	protein coding gene	yes	.	1.391	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C6orf48_UP_LS0673	chr6:31817593|31829619:+	C6orf48	small nucleolar RNA host gene 32	protein coding gene	no	.	197.129	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
NEFH_LS002	chr22:29483574|29485723:+	NEFH	neurofilament heavy	protein coding gene	no	ENST00000310624.6	18.030	29.883	1.994	0.417(3991)	0.459(322)	0.607(10544)	non tumor-specific	nAS	yes
AC021351.1_LS004	chr15:35974769|36033193:-	AC021351.1	-	lncRNA gene	no	ENST00000650498.1;ENST00000561394.1	6.329	0.000	0.687	0.002(20)	0(0)	0.007(114)	non tumor-specific	nAS	yes
URI1_LS017	chr19:30004556|30005361:+	URI1	URI1 prefoldin like chaperone	protein coding gene	yes	ENST00000574176.1	0.031	0.017	0.716	0.256(2455)	0.308(216)	0.238(4130)	non tumor-specific	alt_5prime;exon_skip	yes
PPP5C_LS011	chr19:46387453|46388408:+	PPP5C	protein phosphatase 5 catalytic subunit	protein coding gene	no	ENST00000012443.8;ENST00000478046.5;ENST00000391919.1;ENST00000486994.5;ENST00000491003.5;ENST00000492109.6;ENST00000525507.5	191.724	94.178	94.500	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
UN_TRAF5_LS0029	chr1:211361162|211369452:+	TRAF5	TNF receptor associated factor 5	protein coding gene	no	.	1.701	0.206	0.000	0.003(31)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
SLC25A26_LS016	chr3:66369542|66370529:+	SLC25A26	solute carrier family 25 member 26	protein coding gene	no	ENST00000354883.10;ENST00000336733.10;ENST00000464350.6;ENST00000413054.5;ENST00000483224.5;ENST00000484768.1	65.437	46.019	38.197	0.994(9525)	0.994(698)	0.979(17018)	non tumor-specific	exon_skip	yes
UN_FBXO34_LS0020	chr14:55307400|55350381:+	FBXO34	F-box protein 34	protein coding gene	no	.	1.307	1.178	0.000	0.037(351)	0.071(50)	0(0)	non tumor-specific	nAS	no
POLD1_LS011	chr19:50395150|50398851:+	POLD1	DNA polymerase delta 1, catalytic subunit	protein coding gene	no	ENST00000601098.5;ENST00000643407.1;ENST00000593887.1	0.151	0.276	0.930	0.547(5240)	0.395(277)	0.509(8839)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
PTK7_LS013	chr6:43139150|43145220:+	PTK7	protein tyrosine kinase 7 (inactive)	protein coding gene	yes	ENST00000489707.5	0.025	0.054	0.689	0.327(3131)	0.236(166)	0.096(1671)	non tumor-specific	nAS	yes
SEPT5_LS018	chr22:19721957|19722237:+	SEPT5	septin 5	protein coding gene	no	ENST00000455784.6;ENST00000406395.5;ENST00000406172.6;ENST00000412544.5;ENST00000383045.7;ENST00000438754.6	47.283	72.303	60.808	0.964(9236)	0.967(679)	0.978(16997)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
SBF1_LS011	chr22:50455409|50455481:-	SBF1	SET binding factor 1	protein coding gene	no	ENST00000380817.7;ENST00000348911.10;ENST00000470434.1	75.956	45.215	99.514	0.992(9509)	0.991(696)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC133644.3_LS0040	chr2:87753634|87766728:+	AC133644.3	-	lncRNA gene	no	.	3.391	0.641	0.000	0.025(235)	0.009(6)	0(0)	non tumor-specific	nAS	no
UN_COX19_LS0052	chr7:935505|945799:-	COX19	cytochrome c oxidase assembly factor COX19	protein coding gene	no	.	1.162	0.321	0.000	0.008(79)	0.007(5)	0(0)	non tumor-specific	nAS	no
SLC25A15_LS009	chr13:40802300|40805118:+	SLC25A15	solute carrier family 25 member 15	protein coding gene	no	ENST00000478827.1	0.140	0.277	0.661	0.067(642)	0.097(68)	0.049(857)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LINC00856_LS0093	chr10:78524640|78528701:-	LINC00856	long intergenic non-protein coding RNA 856	lncRNA gene	no	.	1.930	0.323	0.000	0.008(75)	0.003(2)	0(0)	non tumor-specific	nAS	no
BSDC1_LS006	chr1:32369338|32376262:-	BSDC1	BSD domain containing 1	protein coding gene	no	ENST00000444377.5	0.076	0.449	2.079	0.429(4109)	0.517(363)	0.811(14092)	non tumor-specific	alt_5prime;exon_skip	yes
CYBA_LS006	chr16:88646197|88646520:-	CYBA	cytochrome b-245 alpha chain	protein coding gene	no	ENST00000568278.1	0.007	0.125	0.951	0.553(5296)	0.456(320)	0.392(6807)	non tumor-specific	exon_skip;intron_retention	yes
RDH8_LS009	chr19:10021438|10021534:+	RDH8	retinol dehydrogenase 8	protein coding gene	no	ENST00000591589.1;ENST00000587782.1	3.614	0.090	0.714	0.031(294)	0.019(13)	0.047(811)	non tumor-specific	alt_3prime;intron_retention	yes
UN_KIAA2013_LS0013	chr1:11922704|11922747:+	KIAA2013	KIAA2013	protein coding gene	no	.	6.191	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MLF2_LS0021	chr12:6748191|6748321:+	MLF2	myeloid leukemia factor 2	protein coding gene	no	.	2.558	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SEPT14P24_UP_LS0150	chr7:56371894|56374258:-	SEPT14P24	septin 14 pseudogene 24	pseudogene	no	.	2.877	0.341	0.000	0.011(107)	0.003(2)	0(0)	non tumor-specific	nAS	no
LIAS_LS026	chr4:39470624|39471236:+	LIAS	lipoic acid synthetase	protein coding gene	no	ENST00000639614.1	1.742	1.830	1.300	0(1)	0.001(1)	0.042(738)	non tumor-specific	nAS	yes
GRIN3B_LS010	chr19:1008927|1009173:+	GRIN3B	glutamate ionotropic receptor NMDA type subunit 3B	protein coding gene	no	ENST00000234389.3	2.414	0.763	0.892	0.084(802)	0.101(71)	0.357(6208)	non tumor-specific	intron_retention	yes
UN_ABCB4_LS0006	chr7:87409392|87417312:-	ABCB4	ATP binding cassette subfamily B member 4	protein coding gene	no	.	2.345	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
NRK_LS007	chrX:105893942|105895433:+	NRK	Nik related kinase	protein coding gene	no	ENST00000243300.13;ENST00000428173.3	3.389	2.529	0.981	0.105(1005)	0.265(186)	0.238(4142)	non tumor-specific	exon_skip	yes
CFDP1_LS017	chr16:75412754|75414578:-	CFDP1	craniofacial development protein 1	protein coding gene	no	ENST00000283882.3;ENST00000566901.5;ENST00000564286.1	169.537	108.797	99.757	0.997(9553)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_ZNF462_LS0064	chr9:107010110|107010823:+	ZNF462	zinc finger protein 462	protein coding gene	no	.	0.219	0.044	0.000	0.027(261)	0.02(14)	0(0)	non tumor-specific	exon_skip	no
HMGXB3_LS012	chr5:150030839|150032454:+	HMGXB3	HMG-box containing 3	protein coding gene	no	ENST00000613459.4;ENST00000503427.5;ENST00000502717.5;ENST00000514469.1;ENST00000513318.1	21.004	11.114	25.603	0.984(9425)	0.991(696)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_FASN_LS0092	chr17:82080549|82081327:+	FASN	fatty acid synthase	protein coding gene	yes	.	0.133	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RUNDC3A_LS0024	chr17:44318193|44318323:+	RUNDC3A	RUN domain containing 3A	protein coding gene	no	.	3.946	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_AC116345.1_LS0012	chr5:73246656|73283031:-	AC116345.1	-	lncRNA gene	no	.	3.359	0.617	0.000	0.003(30)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_TPP1_LS0041	chr11:6613984|6614060:+	TPP1	tripeptidyl peptidase 1	protein coding gene	no	.	4.455	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
INTS8_LS047	chr8:94876489|94880118:+	INTS8	integrator complex subunit 8	protein coding gene	yes	ENST00000524333.5;ENST00000523731.5;ENST00000343161.8;ENST00000523206.5;ENST00000520526.5	41.470	14.003	55.302	0.97(9290)	0.976(685)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
UN_PIEZO2_UP_LS0003	chr18:11310279|11323338:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	.	2.483	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
AC073288.2_LS003	chr3:170413239|170418437:+	AC073288.2	-	lncRNA gene	no	ENST00000468232.1	0.505	0.020	0.683	0.021(199)	0.003(2)	0.053(928)	non tumor-specific	nAS	yes
NAA15_LS015	chr4:139359895|139360500:+	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	protein coding gene	no	ENST00000296543.9;ENST00000398947.1	37.494	18.517	16.940	0.911(8725)	0.974(684)	0.975(16942)	non tumor-specific	nAS	yes
UN_SLC4A5_LS0014	chr2:74294368|74304489:-	SLC4A5	symbol withdrawn, see [HGNC:11030](/data/gene-symbol-report/#!/hgnc_id/HGNC:11030)	protein coding gene	no	.	0.909	0.374	0.000	0.002(15)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_AC133919.2_LS0004	chr16:90116483|90119465:+	AC133919.2	-	lncRNA gene	no	.	2.853	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KHNYN_LS0016	chr14:24434196|24436072:+	KHNYN	KH and NYN domain containing	protein coding gene	no	.	3.187	1.334	0.000	0.009(87)	0.023(16)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	no
BPIFA2_LS007	chr20:33178228|33179604:+	BPIFA2	BPI fold containing family A member 2	protein coding gene	no	ENST00000253362.6;ENST00000354932.5	7.321	2.979	1.134	0.122(1165)	0.123(86)	0.106(1849)	non tumor-specific	nAS	yes
UN_RHBDD1_LS0043	chr2:226980405|226981258:-	RHBDD1	rhomboid domain containing 1	protein coding gene	no	.	1.761	0.589	0.000	0.001(13)	0.017(12)	0(0)	non tumor-specific	nAS	no
AC008115.2_LS001	chr12:12669051|12684905:+	AC008115.2	-	lncRNA gene	no	ENST00000539988.1	4.485	0.007	0.839	0.004(38)	0.001(1)	0.002(42)	non tumor-specific	nAS	yes
RUFY3_LS031	chr4:70800205|70804348:+	RUFY3	RUN and FYVE domain containing 3	protein coding gene	no	.;.	2.370	0.631	0.000	0.002(21)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
AL136317.2_LS001	chr9:66015977|66020016:-	AL136317.2	-	lncRNA gene	no	ENST00000619851.1	0.130	0.085	1.422	0.208(1994)	0.265(186)	0.367(6385)	non tumor-specific	nAS	yes
ZNHIT3_LS005	chr17:36486785|36492813:+	ZNHIT3	zinc finger HIT-type containing 3	protein coding gene	no	ENST00000619730.4;ENST00000612728.4;ENST00000619482.1	5.307	3.974	8.403	0.954(9144)	0.973(683)	0.968(16819)	non tumor-specific	alt_3prime;exon_skip	yes
MAPK10_LS048	chr4:86335156|86399747:-	MAPK10	mitogen-activated protein kinase 10	protein coding gene	yes	ENST00000503911.5	0.050	0.000	0.688	0.003(25)	0.01(7)	0.001(24)	non tumor-specific	exon_skip	yes
TCP11L2_LS019	chr12:106340998|106346286:+	TCP11L2	t-complex 11 like 2	protein coding gene	no	ENST00000299045.7	10.903	10.626	13.317	0.87(8331)	0.93(653)	0.975(16947)	non tumor-specific	exon_skip	yes
UN_RAB40A_UP_LS0007	chrX:103530833|103531110:-	RAB40A	RAB40A, member RAS oncogene family	protein coding gene	no	.	2.011	0.153	0.000	0.005(52)	0.004(3)	0(0)	non tumor-specific	nAS	no
KPNA7_LS006	chr7:99193101|99195070:-	KPNA7	karyopherin subunit alpha 7	protein coding gene	no	ENST00000327442.6	2.981	1.092	0.922	0.181(1735)	0.121(85)	0.094(1640)	non tumor-specific	alt_5prime;exon_skip	yes
SSUH2_LS005	chr3:8626321|8626914:-	SSUH2	ssu-2 homolog	protein coding gene	no	ENST00000455157.6	0.325	0.000	0.720	0.003(27)	0(0)	0.045(780)	non tumor-specific	alt_5prime	yes
NR2C1_LS013	chr12:95030629|95031349:-	NR2C1	nuclear receptor subfamily 2 group C member 1	protein coding gene	no	ENST00000552791.1;ENST00000393101.7	0.107	0.136	0.868	0.364(3488)	0.299(210)	0.398(6915)	non tumor-specific	alt_3prime;intron_retention	yes
UN_DPY19L1P2_LS0015	chr7:32823221|32833008:+	DPY19L1P2	DPY19L1 pseudogene 2	pseudogene	no	.	0.884	0.279	0.000	0.024(233)	0.017(12)	0(0)	non tumor-specific	nAS	no
FAM47E-STBD1_LS008	chr4:76268813|76271568:+	FAM47E-STBD1	FAM47E-STBD1 readthrough	protein coding gene	no	ENST00000509377.1;ENST00000514140.1	4.716	3.859	4.020	0.578(5538)	0.853(599)	0.828(14386)	non tumor-specific	alt_5prime	yes
FXR2_LS006	chr17:7592157|7592254:-	FXR2	FMR1 autosomal homolog 2	protein coding gene	no	ENST00000573057.1	0.345	0.456	3.725	0.805(7716)	0.835(586)	0.908(15775)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_TUBGCP2_LS0068	chr10:133300113|133300452:-	TUBGCP2	tubulin gamma complex associated protein 2	protein coding gene	no	.	1.985	0.366	0.000	0.005(52)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TDRD12_LS037	chr19:32826749|32827164:+	TDRD12	tudor domain containing 12	protein coding gene	no	ENST00000647536.1;ENST00000564769.2;ENST00000639142.1	13.787	0.586	0.908	0.056(537)	0.036(25)	0.189(3287)	non tumor-specific	alt_3prime;exon_skip	yes
ZZEF1_LS034	chr17:4066540|4067163:-	ZZEF1	zinc finger ZZ-type and EF-hand domain containing 1	protein coding gene	no	ENST00000381638.6;ENST00000572426.5;ENST00000570365.1	8.643	8.047	12.336	0.84(8048)	0.927(651)	0.969(16839)	non tumor-specific	alt_3prime	yes
SUN3_LS009	chr7:48006053|48007153:-	SUN3	Sad1 and UNC84 domain containing 3	protein coding gene	no	ENST00000453071.5	0.147	0.000	0.718	0.001(7)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_EXOC3L4_UP_LS0006	chr14:103097753|103098887:+	EXOC3L4	exocyst complex component 3 like 4	protein coding gene	no	.	2.765	0.262	0.000	0.001(13)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_RNF19B_LS0008	chr1:32938523|32942252:-	RNF19B	ring finger protein 19B	protein coding gene	no	.	11.691	1.063	0.000	0.005(52)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAGK_LS018	chr2:71068712|71072641:+	NAGK	N-acetylglucosamine kinase	protein coding gene	no	ENST00000443872.6;ENST00000484984.1;ENST00000493102.5;ENST00000443872.6;ENST00000484984.1;ENST00000493102.5	0.035	0.035	1.293	0.774(7415)	0.712(500)	0.592(10295)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
LINC01972_LS001	chr3:194765610|194768415:-	LINC01972	long intergenic non-protein coding RNA 1972	lncRNA gene	no	ENST00000422271.1	0.163	0.000	0.686	0.002(23)	0(0)	0.001(23)	non tumor-specific	nAS	yes
UN_ENTPD5_LS0004	chr14:73958273|73958971:+	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	.	5.438	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
UN_AAMP_LS0019	chr2:218264408|218265638:+	AAMP	angio associated migratory cell protein	protein coding gene	no	.	0.884	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
PCGF3_LS025	chr4:766405|766674:+	PCGF3	polycomb group ring finger 3	protein coding gene	no	ENST00000440452.5	2.556	1.292	2.085	0.647(6200)	0.674(473)	0.842(14628)	non tumor-specific	alt_3prime;intron_retention	yes
UN_DIS3L2_LS0011	chr2:232014979|232024277:+	DIS3L2	DIS3 like 3'-5' exoribonuclease 2	protein coding gene	no	.	1.233	0.381	0.000	0.008(78)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
UN_GALNTL6_LS0011	chr4:172156222|172229656:+	GALNTL6	polypeptide N-acetylgalactosaminyltransferase like 6	protein coding gene	no	.	2.521	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PPP2R3A_LS0033	chr3:136090667|136091162:+	PPP2R3A	protein phosphatase 2 regulatory subunit B''alpha	protein coding gene	no	.	1.175	0.194	0.000	0.004(42)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_PPCS_LS0008	chr1:42457350|42457452:+	PPCS	phosphopantothenoylcysteine synthetase	protein coding gene	no	.	3.643	1.404	0.000	0.038(367)	0.031(22)	0(0)	non tumor-specific	intron_retention	no
PDE1C_LS017	chr7:31879178|31880747:-	PDE1C	phosphodiesterase 1C	protein coding gene	no	ENST00000396193.5;ENST00000396191.5;ENST00000321453.11;ENST00000396184.7;ENST00000396182.6;ENST00000464881.1	3.744	2.992	3.360	0.237(2273)	0.598(420)	0.758(13172)	non tumor-specific	nAS	yes
UN_AC079921.2_UP_LS0002	chr4:39126857|39127650:+	AC079921.2	-	lncRNA gene	no	.	1.085	0.411	0.000	0.037(358)	0.056(39)	0(0)	non tumor-specific	nAS	no
ANXA5_LS006	chr4:121669724|121669954:-	ANXA5	annexin A5	protein coding gene	no	ENST00000296511.9;ENST00000501272.6;ENST00000506395.5;ENST00000515017.5;ENST00000509648.5;ENST00000515717.1	1252.048	622.945	514.617	0.998(9563)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_FP700111.1_LS0010	chr1:144720690|144725354:+	FP700111.1	-	lncRNA gene	no	.	1.626	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PRKCA_LS0057	chr17:66788979|66791192:+	PRKCA	protein kinase C alpha	protein coding gene	yes	.	1.736	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_ANXA10_LS0006	chr4:168160293|168162528:+	ANXA10	annexin A10	protein coding gene	no	.	10.225	4.765	0.000	0.009(91)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_TTL_LS0039	chr2:112520425|112521222:+	TTL	tubulin tyrosine ligase	protein coding gene	no	.	3.386	1.240	0.000	0.266(2552)	0.238(167)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention;mutex_exons	no
NPIPB2_LS012	chr16:11937668|11941838:-	NPIPB2	nuclear pore complex interacting protein family member B2	protein coding gene	no	ENST00000538896.5	1.287	0.231	0.714	0.091(875)	0.073(51)	0.184(3192)	non tumor-specific	alt_5prime;exon_skip	yes
NBEA_LS009	chr13:35070105|35070719:+	NBEA	neurobeachin	protein coding gene	no	ENST00000400445.7;ENST00000310336.8;ENST00000629018.2;ENST00000379939.6;ENST00000497540.1	1.089	1.706	2.176	0.502(4811)	0.697(489)	0.747(12985)	non tumor-specific	nAS	yes
COL18A1_LS018	chr21:45480156|45480467:+	COL18A1	collagen type XVIII alpha 1 chain	protein coding gene	no	ENST00000400337.6;ENST00000355480.9;ENST00000359759.8	141.548	133.869	106.760	0.984(9429)	0.996(699)	0.978(16994)	non tumor-specific	exon_skip	yes
UN_TMEM132B_LS0010	chr12:125331687|125349452:+	TMEM132B	transmembrane protein 132B	protein coding gene	no	.	0.693	0.126	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	nAS	no
AMN1_LS007	chr12:31702007|31708918:-	AMN1	antagonist of mitotic exit network 1 homolog	protein coding gene	no	ENST00000457428.6	0.143	0.041	0.800	0.071(685)	0.073(51)	0.289(5026)	non tumor-specific	alt_5prime;exon_skip	yes
AKR1D1_LS008	chr7:138097943|138106608:+	AKR1D1	aldo-keto reductase family 1 member D1	protein coding gene	no	ENST00000411726.6	0.300	0.715	2.532	0.03(285)	0.088(62)	0.012(201)	non tumor-specific	exon_skip	yes
UN_LINC02532_LS0090	chr6:106756642|106768180:-	LINC02532	long intergenic non-protein coding RNA 2532	lncRNA gene	no	.	2.661	1.658	0.000	0.001(11)	0.004(3)	0(0)	non tumor-specific	nAS	no
ABCD3_LS014	chr1:94480606|94482589:+	ABCD3	ATP binding cassette subfamily D member 3	protein coding gene	no	.;.	2.546	0.000	0.000	0.003(24)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZNF767P_LS0039	chr7:149570160|149582830:+	ZNF767P	zinc finger family member 767, pseudogene	pseudogene	no	.	2.020	0.241	0.000	0.004(43)	0.003(2)	0(0)	non tumor-specific	nAS	no
CYP19A1_LS012	chr15:51242950|51278008:-	CYP19A1	cytochrome P450 family 19 subfamily A member 1	protein coding gene	no	ENST00000405011.6	6.315	1.284	0.906	0.001(8)	0.003(2)	0.009(149)	non tumor-specific	nAS	yes
POLR1A_LS029	chr2:86078284|86080816:-	POLR1A	RNA polymerase I subunit A	protein coding gene	no	ENST00000263857.10;ENST00000409681.1;ENST00000486964.5	14.825	6.490	5.518	0.874(8376)	0.916(643)	0.936(16266)	non tumor-specific	nAS	yes
UN_AC090227.1_LS0008	chr18:49800081|49802728:+	AC090227.1	-	protein coding gene	no	.	4.886	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
METTL3_LS028	chr14:21503881|21508136:-	METTL3	methyltransferase like 3	protein coding gene	no	ENST00000377543.3	0.161	0.146	0.750	0.086(827)	0.073(51)	0.255(4440)	non tumor-specific	exon_skip	yes
UN_HDAC5_LS0026	chr17:44088619|44091270:-	HDAC5	histone deacetylase 5	protein coding gene	no	.	6.326	0.020	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
KCTD5_LS007	chr16:2697997|2699821:+	KCTD5	potassium channel tetramerization domain containing 5	protein coding gene	no	ENST00000301738.8	68.343	35.296	17.821	0.991(9497)	0.994(698)	0.979(17009)	non tumor-specific	exon_skip	yes
HIRA_LS026	chr22:19410778|19431440:-	HIRA	histone cell cycle regulator	protein coding gene	yes	ENST00000340170.8;ENST00000263208.5	4.482	3.577	8.220	0.922(8831)	0.973(683)	0.972(16897)	non tumor-specific	nAS	yes
NUDT22_LS015	chr11:64227666|64229478:+	NUDT22	nudix hydrolase 22	protein coding gene	no	.;.	7.960	1.181	0.000	0.011(101)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SERPINB7_LS0013	chr18:63801012|63803626:+	SERPINB7	serpin family B member 7	protein coding gene	no	.	6.560	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_MT-TY_UP_LS0007	chrM:6212|8465:-	MT-TY	mitochondrially encoded tRNA-Tyr (UAU/C)	small non-coding RNA gene	no	.	301.465	212.735	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	nAS	no
ANO3_LS013	chr11:26542068|26547416:+	ANO3	anoctamin 3	protein coding gene	no	ENST00000525139.5;ENST00000256737.7;ENST00000531568.1;ENST00000529242.1	4.873	1.167	1.305	0.071(680)	0.164(115)	0.289(5024)	non tumor-specific	nAS	yes
AP1M1_LS001	chr19:16197973|16198011:+	AP1M1	adaptor related protein complex 1 subunit mu 1	protein coding gene	no	ENST00000590263.5	0.044	0.009	0.619	0.054(514)	0.053(37)	0.01(175)	non tumor-specific	intron_retention	yes
CXorf38_LS003	chrX:40636712|40637007:-	CXorf38	chromosome X open reading frame 38	protein coding gene	no	ENST00000378426.5;ENST00000327877.9;ENST00000378421.1	26.965	14.562	14.941	0.992(9503)	0.994(698)	0.978(16998)	non tumor-specific	exon_skip	yes
UN_PCBP1-AS1_LS0029	chr2:70085903|70086882:-	PCBP1-AS1	PCBP1 antisense RNA 1	lncRNA gene	no	.	1.098	0.159	0.000	0.001(14)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_MT-ATP6_LS0048	chrM:8920|9026:+	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	protein coding gene	no	.	6253.089	607.543	0.000	0.003(24)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_GTF2IP13_LS0095	chr7:45813311|45813509:+	GTF2IP13	general transcription factor IIi pseudogene 13	pseudogene	no	.	3.057	0.576	0.000	0.003(29)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMPRSS9_LS020	chr19:2424257|2425002:+	TMPRSS9	transmembrane serine protease 9	protein coding gene	no	ENST00000649857.1;ENST00000648592.1;ENST00000613480.1;ENST00000332578.8	7.344	0.658	1.349	0.048(456)	0.038(27)	0.252(4386)	non tumor-specific	alt_3prime	yes
UN_OR2A9P_UP_LS0007	chr7:144185839|144266959:+	OR2A9P	olfactory receptor family 2 subfamily A member 9 pseudogene	pseudogene	no	.	0.106	0.027	0.000	0.003(24)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC073264.3_UP_LS0004	chr7:143604879|143607793:+	AC073264.3	-	pseudogene	no	.	18.421	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
EBF3_LS001	chr10:129837960|129839083:-	EBF3	EBF transcription factor 3	protein coding gene	yes	ENST00000440978.1	1.340	0.413	2.223	0.174(1668)	0.291(204)	0.572(9946)	non tumor-specific	exon_skip	yes
BLOC1S6_LS006	chr15:45587525|45605428:+	BLOC1S6	biogenesis of lysosomal organelles complex 1 subunit 6	protein coding gene	no	ENST00000567740.5;ENST00000566184.1	0.168	0.159	2.378	0.78(7469)	0.862(605)	0.813(14133)	non tumor-specific	nAS	yes
UN_BPGM_UP_LS0015	chr7:134536772|134575821:+	BPGM	bisphosphoglycerate mutase	protein coding gene	no	.	124.854	31.874	0.000	0.011(108)	0.023(16)	0(0)	non tumor-specific	nAS	no
PHYH_LS013	chr10:13298245|13299420:-	PHYH	phytanoyl-CoA 2-hydroxylase	protein coding gene	no	ENST00000453759.6	0.104	0.108	0.706	0.149(1425)	0.264(185)	0.114(1989)	non tumor-specific	exon_skip	yes
ZDHHC8_LS002	chr22:20132051|20139194:+	ZDHHC8	zinc finger DHHC-type palmitoyltransferase 8	protein coding gene	no	ENST00000334554.11;ENST00000320602.11;ENST00000405930.3	9.367	5.945	21.405	0.957(9170)	0.969(680)	0.978(16994)	non tumor-specific	alt_3prime;exon_skip	yes
ACER1_LS003	chr19:6309834|6312149:-	ACER1	alkaline ceramidase 1	protein coding gene	no	ENST00000301452.4	7.035	12.509	1.214	0.063(607)	0.127(89)	0.322(5595)	non tumor-specific	nAS	yes
ATP6V0A1_LS017	chr17:42478589|42478927:+	ATP6V0A1	ATPase H+ transporting V0 subunit a1	protein coding gene	no	ENST00000592324.1	0.160	0.061	0.857	0.291(2791)	0.39(274)	0.389(6758)	non tumor-specific	exon_skip;intron_retention	yes
RBM42_LS018	chr19:35634373|35637442:+	RBM42	RNA binding motif protein 42	protein coding gene	no	ENST00000589559.5	0.105	0.198	0.653	0.864(8278)	0.882(619)	0.014(236)	non tumor-specific	exon_skip	yes
EIF2B1_LS014	chr12:123630533|123632345:-	EIF2B1	eukaryotic translation initiation factor 2B subunit alpha	protein coding gene	no	ENST00000424014.6;ENST00000539951.5;ENST00000534960.5;ENST00000537073.1;ENST00000452159.6;ENST00000543940.1	51.076	30.480	45.427	0.993(9513)	0.997(700)	0.979(17019)	non tumor-specific	exon_skip	yes
UN_TACSTD2_LS0041	chr1:58575940|58576233:-	TACSTD2	tumor associated calcium signal transducer 2	protein coding gene	yes	.	83.594	61.177	0.000	0.031(295)	0.02(14)	0(0)	non tumor-specific	nAS	no
DGKA_LS019	chr12:55932909|55933505:+	DGKA	diacylglycerol kinase alpha	protein coding gene	no	ENST00000550115.5	0.145	0.044	0.662	0.023(225)	0.014(10)	0.051(883)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
LCT_LS015	chr2:135824003|135829593:-	LCT	lactase	protein coding gene	no	ENST00000264162.6	4.051	3.154	0.939	0.004(43)	0.011(8)	0.01(166)	non tumor-specific	nAS	yes
UMODL1_LS021	chr21:42113118|42113573:+	UMODL1	uromodulin like 1	protein coding gene	no	ENST00000475047.1	0.635	0.000	0.677	0(4)	0(0)	0.003(44)	non tumor-specific	exon_skip	yes
LRP1_LS093	chr12:57211588|57211750:+	LRP1	LDL receptor related protein 1	protein coding gene	no	ENST00000243077.7;ENST00000556356.1	365.542	254.653	401.037	0.994(9520)	0.997(700)	0.979(17016)	non tumor-specific	alt_3prime;exon_skip	yes
ASPHD1_LS006	chr16:29901920|29904852:+	ASPHD1	aspartate beta-hydroxylase domain containing 1	protein coding gene	no	ENST00000563177.5;ENST00000483405.5;ENST00000308748.9;ENST00000414952.6;ENST00000566693.1	22.085	11.390	4.051	0.917(8786)	0.819(575)	0.776(13482)	non tumor-specific	alt_5prime;exon_skip	yes
LINC00535_LS011	chr8:93659579|93663346:-	LINC00535	long intergenic non-protein coding RNA 535	lncRNA gene	no	ENST00000501400.1	1.418	0.381	0.705	0.001(5)	0.003(2)	0.018(320)	non tumor-specific	nAS	yes
UN_CCNG1_LS0005	chr5:163441331|163441889:+	CCNG1	cyclin G1	protein coding gene	no	.	10.777	6.648	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
NIPAL4_LS008	chr5:157468812|157471657:+	NIPAL4	NIPA like domain containing 4	protein coding gene	no	ENST00000435489.6;ENST00000311946.7;ENST00000519150.1	7.336	4.775	2.491	0.283(2715)	0.214(150)	0.507(8821)	non tumor-specific	exon_skip	yes
UN_POTEKP_UP_LS0023	chr2:131565044|131568443:+	POTEKP	POTE ankyrin domain family member K, pseudogene	pseudogene	no	.	1.555	1.130	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
MBIP_LS001	chr14:36299187|36300785:-	MBIP	MAP3K12 binding inhibitory protein 1	protein coding gene	no	ENST00000318473.11	0.874	0.911	6.229	0.876(8393)	0.896(629)	0.944(16416)	non tumor-specific	alt_3prime	yes
UN_HSPB8_LS0019	chr12:119182179|119182874:-	HSPB8	heat shock protein family B (small) member 8	protein coding gene	no	.	3.631	0.214	0.000	0.013(125)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TMEM220_LS0003	chr17:10704170|10723270:-	TMEM220	transmembrane protein 220	protein coding gene	no	.	1.586	0.613	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	exon_skip	no
UN_MIR99AHG_LS0005	chr21:15965407|15972311:+	MIR99AHG	mir-99a-let-7c cluster host gene	lncRNA gene	yes	.	2.932	0.387	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_IFNA5_UP_LS0010	chr9:21321633|21324076:-	IFNA5	interferon alpha 5	protein coding gene	no	.	1.005	0.870	0.000	0.23(2201)	0.342(240)	0(0)	non tumor-specific	nAS	no
AC093772.1_LS007	chr4:127415162|127470435:-	AC093772.1	-	lncRNA gene	no	ENST00000504050.5	0.110	0.000	0.860	0.001(6)	0(0)	0(2)	non tumor-specific	nAS	yes
AP002026.1_LS009	chr4:99204427|99252835:+	AP002026.1	-	lncRNA gene	no	ENST00000506454.1	3.022	0.000	0.709	0(4)	0(0)	0.144(2507)	non tumor-specific	nAS	yes
UN_LINC01965_LS0005	chr2:104053620|104072171:+	LINC01965	long intergenic non-protein coding RNA 1965	lncRNA gene	no	.	1.927	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
AMFR_LS007	chr16:56386022|56401733:-	AMFR	autocrine motility factor receptor	protein coding gene	no	ENST00000492830.5;ENST00000568762.1	2.019	1.688	0.927	0.567(5430)	0.651(457)	0.477(8297)	non tumor-specific	exon_skip	yes
NEK10_LS031	chr3:27291390|27291484:-	NEK10	NIMA related kinase 10	protein coding gene	no	ENST00000429845.6;ENST00000574215.5;ENST00000341435.9;ENST00000424275.1	1.925	1.135	1.260	0.071(681)	0.231(162)	0.478(8309)	non tumor-specific	nAS	yes
ARSG_LS010	chr17:68356804|68359488:+	ARSG	arylsulfatase G	protein coding gene	no	ENST00000581032.1	0.323	0.085	0.719	0.198(1897)	0.11(77)	0.122(2120)	non tumor-specific	nAS	yes
UN_XRRA1_LS0082	chr11:74934483|74935221:+	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	.	4.612	0.356	0.000	0.007(64)	0.001(1)	0(0)	non tumor-specific	nAS	no
F2_LS018	chr11:46728837|46729380:+	F2	coagulation factor II, thrombin	protein coding gene	no	ENST00000311907.9	117.780	312.014	0.911	0.111(1060)	0.097(68)	0.269(4680)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_OSBPL1A_LS0019	chr18:24181279|24196136:-	OSBPL1A	oxysterol binding protein like 1A	protein coding gene	no	.	1.940	0.261	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_FYB1_LS0006	chr5:39124278|39126005:-	FYB1	FYN binding protein 1	protein coding gene	no	.	1.446	0.645	0.000	0.006(60)	0.009(6)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_SLC2A4RG_LS0094	chr20:63743045|63743080:+	SLC2A4RG	SLC2A4 regulator	protein coding gene	no	.	16.353	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MAGEB18_LS002	chrX:26140053|26140180:+	MAGEB18	MAGE family member B18	protein coding gene	no	ENST00000325250.1	2.391	0.000	0.798	0.006(55)	0(0)	0.001(13)	non tumor-specific	nAS	yes
UN_MTIF3_LS0007	chr13:27437273|27438087:-	MTIF3	mitochondrial translational initiation factor 3	protein coding gene	no	.	6.934	0.269	0.000	0.001(11)	0.003(2)	0(0)	non tumor-specific	nAS	no
IVL_LS011	chr1:152911165|152911346:+	IVL	involucrin	protein coding gene	no	.;.	24.738	14.469	0.000	0.001(8)	0.003(2)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CSGALNACT1_LS025	chr8:19601865|19682473:-	CSGALNACT1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein coding gene	no	ENST00000332246.10	0.307	0.136	0.938	0.095(907)	0.134(94)	0.083(1443)	non tumor-specific	alt_5prime	yes
VWA3A_LS019	chr16:22119027|22121514:+	VWA3A	von Willebrand factor A domain containing 3A	protein coding gene	no	ENST00000566668.1;ENST00000566668.1;ENST00000566668.1	0.384	0.017	0.974	0.016(158)	0.026(18)	0.109(1903)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_AC012363.1_LS0001	chr2:120175857|120180139:-	AC012363.1	-	lncRNA gene	no	.	2.966	0.537	0.000	0.026(249)	0.004(3)	0(0)	non tumor-specific	nAS	no
AC093227.2_LS006	chr19:37708009|37719015:-	AC093227.2	-	protein coding gene	no	ENST00000585547.5	0.371	0.162	0.677	0.003(32)	0.007(5)	0.005(89)	non tumor-specific	nAS	yes
UN_CASQ2_LS0001	chr1:115705292|115705403:-	CASQ2	calsequestrin 2	protein coding gene	no	.	3.208	0.000	0.000	0.004(40)	0(0)	0(0)	non tumor-specific	nAS	no
CAPSL_LS003	chr5:35910543|35920984:-	CAPSL	calcyphosine like	protein coding gene	no	ENST00000397367.6;ENST00000397366.5;ENST00000513623.5;ENST00000514524.2	5.368	3.342	1.783	0.269(2576)	0.466(327)	0.19(3297)	non tumor-specific	alt_3prime;exon_skip	yes
UN_ATP13A4_LS0004	chr3:193404726|193407313:-	ATP13A4	ATPase 13A4	protein coding gene	no	.	0.675	0.886	0.000	0.008(75)	0.011(8)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
SEC14L1_LS274	chr17:77215922|77216388:+	SEC14L1	SEC14 like lipid binding 1	protein coding gene	no	.;.;.	7.673	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_IGHEP1_UP_LS0189	chr14:105743070|105775027:-	IGHEP1	immunoglobulin heavy constant epsilon P1 (pseudogene)	no	no	.	17.166	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_Z98755.1_UP_LS0012	chr6:102820423|102820687:+	Z98755.1	-	pseudogene	no	.	1.331	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
HNRNPA1_LS018	chr12:54282874|54283812:+	HNRNPA1	heterogeneous nuclear ribonucleoprotein A1	protein coding gene	yes	ENST00000546500.5;ENST00000547708.5;ENST00000547566.5;ENST00000330752.12;ENST00000550482.1;ENST00000546500.5;ENST00000547708.5;ENST00000547566.5;ENST00000330752.12;ENST00000550482.1	2121.262	967.705	920.222	0.997(9557)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PEBP1_LS0003	chr12:118136162|118144960:-	PEBP1	phosphatidylethanolamine binding protein 1	protein coding gene	yes	.	0.496	0.558	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_E2F2_LS0008	chr1:23521069|23521837:-	E2F2	E2F transcription factor 2	protein coding gene	yes	.	3.300	0.000	0.000	0.004(34)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime	no
ZAN_LS011	chr7:100751266|100751712:+	ZAN	zonadhesin	protein coding gene	no	ENST00000613979.4;ENST00000620868.4;ENST00000538115.5;ENST00000546213.5;ENST00000542585.5;ENST00000620596.4;ENST00000618565.4;ENST00000546292.2	3.581	0.000	0.578	0.005(49)	0(0)	0.002(33)	non tumor-specific	nAS	yes
PNCK_LS037	chrX:153674854|153686501:-	PNCK	pregnancy up-regulated nonubiquitous CaM kinase	protein coding gene	no	.;.;.	1.714	0.000	0.000	0.008(77)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SLC23A1_LS025	chr5:139382605|139384358:-	SLC23A1	solute carrier family 23 member 2	protein coding gene	no	.;.	1.975	2.322	0.000	0.004(42)	0.004(3)	0(0)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL008707.1_UP_LS0003	chrX:125206171|125213131:-	AL008707.1	-	pseudogene	no	.	3.853	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
CLASRP_LS008	chr19:45053177|45056450:+	CLASRP	CLK4 associating serine/arginine rich protein	protein coding gene	no	ENST00000221455.7;ENST00000391953.8;ENST00000391952.7;ENST00000544944.6;ENST00000587112.1;ENST00000588016.1	62.545	31.645	124.151	0.994(9528)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_HHAT_LS0043	chr1:210500746|210503594:-	HHAT	hedgehog acyltransferase	protein coding gene	no	.	9.801	0.410	0.000	0.007(71)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC00347_LS002	chr13:74552903|74554613:+	LINC00347	long intergenic non-protein coding RNA 347	lncRNA gene	no	ENST00000594461.2;ENST00000596240.5	0.146	0.000	0.671	0.001(9)	0(0)	0.006(100)	non tumor-specific	nAS	yes
UN_CFAP44_LS0025	chr3:113338736|113341744:-	CFAP44	cilia and flagella associated protein 44	protein coding gene	no	.	0.964	0.117	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_LMO4_LS0038	chr1:87336297|87339536:+	LMO4	LIM domain only 4	protein coding gene	yes	.	3.434	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_NUCB2_LS0054	chr11:17334536|17336960:+	NUCB2	nucleobindin 2	protein coding gene	no	.	4.434	0.595	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
HSP90AB1_LS015	chr6:44250154|44250291:+	HSP90AB1	heat shock protein 90 alpha family class B member 1	protein coding gene	no	ENST00000620073.4;ENST00000353801.7;ENST00000371646.9;ENST00000371554.2	2057.210	1002.073	1088.570	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
MOCS2_LS009	chr5:53100534|53102097:-	MOCS2	molybdenum cofactor synthesis 2	protein coding gene	no	ENST00000361377.8;ENST00000361377.8	0.169	0.191	1.390	0.711(6810)	0.832(584)	0.568(9868)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SLC2A11_LS023	chr22:23877869|23882459:+	SLC2A11	solute carrier family 2 member 11	protein coding gene	no	ENST00000345044.10;ENST00000398356.6;ENST00000467660.5;ENST00000611880.4;ENST00000405340.6;ENST00000316185.8;ENST00000472526.1	1.705	3.278	2.918	0.697(6677)	0.838(588)	0.893(15526)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_UBQLN1_LS0014	chr9:83668631|83669185:-	UBQLN1	ubiquilin 1	protein coding gene	no	.	4.881	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_OAS1_LS0010	chr12:112908769|112917708:-	OAS1	2'-5'-oligoadenylate synthetase 1	protein coding gene	no	.	0.732	0.531	0.000	0.001(14)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SNRNP200_LS0027	chr2:96278358|96278473:-	SNRNP200	small nuclear ribonucleoprotein U5 subunit 200	protein coding gene	no	.	14.327	4.861	0.000	0.009(82)	0.006(4)	0(0)	non tumor-specific	alt_5prime	no
UN_FP236383.2_UP_LS0397	chr21:8401666|8445628:-	FP236383.2	-	lncRNA gene	no	.	389.491	15.892	0.000	0.002(20)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_KLK11_LS0045	chr19:51027517|51027781:-	KLK11	kallikrein related peptidase 11	protein coding gene	no	.	2.487	1.862	0.000	0.005(44)	0.01(7)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_NUP205_LS0006	chr7:135578930|135584832:+	NUP205	nucleoporin 205	protein coding gene	no	.	4.151	0.278	0.000	0.008(76)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AC004160.1_LS0017	chr7:11322424|11325758:+	AC004160.1	-	lncRNA gene	no	.	4.471	0.889	0.000	0.005(50)	0.056(39)	0(0)	non tumor-specific	nAS	no
DVL1_LS012	chr1:1340177|1340247:-	DVL1	dishevelled segment polarity protein 1	protein coding gene	no	ENST00000378891.9;ENST00000378888.9;ENST00000633096.1	93.781	59.420	108.386	0.994(9525)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
UN_NDUFB2P1_UP_LS0003	chr4:154626813|154636329:+	NDUFB2P1	NADH:ubiquinone oxidoreductase subunit B2 pseudogene 2	pseudogene	no	.	1.328	0.036	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
HDAC3_LS002	chr5:141625365|141625685:-	HDAC3	histone deacetylase 3	protein coding gene	yes	ENST00000469550.6;ENST00000305264.7;ENST00000459727.5;ENST00000491581.5;ENST00000486618.1	116.237	62.376	118.394	0.998(9559)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
CABYR_LS001	chr18:24139118|24139951:+	CABYR	calcium binding tyrosine phosphorylation regulated	protein coding gene	no	ENST00000585037.5	0.005	0.000	0.678	0.013(127)	0.001(1)	0.001(19)	non tumor-specific	exon_skip	yes
SYTL3_LS005	chr6:158662812|158665387:+	SYTL3	synaptotagmin like 3	protein coding gene	no	.;.	1.649	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AC036214.1_LS005	chr8:79820611|79821128:-	AC036214.1	-	lncRNA gene	no	ENST00000517365.1	6.903	0.279	1.263	0.011(109)	0.003(2)	0.187(3253)	non tumor-specific	nAS	yes
UN_DHX8_LS0063	chr17:43529228|43529504:-	DHX8	DEAH-box helicase 8	protein coding gene	no	.	46.261	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime	no
UN_AC246787.2_UP_LS0977	chr14:105668983|105742103:+	AC246787.2	-	lncRNA gene	no	.	24.448	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FHAD1_LS0038	chr1:15317413|15322908:-	FHAD1	forkhead associated phosphopeptide binding domain 1	protein coding gene	no	.	3.490	0.000	0.000	0.005(51)	0(0)	0(0)	non tumor-specific	nAS	no
DGKI_LS016	chr7:137469619|137487610:-	DGKI	diacylglycerol kinase iota	protein coding gene	no	ENST00000460662.2	0.738	0.131	0.827	0.081(780)	0.098(69)	0.017(303)	non tumor-specific	exon_skip	yes
UN_VCX3B_LS0004	chrX:8465999|8466240:+	VCX3B	variable charge X-linked 3B	protein coding gene	no	.	12.879	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF254_LS0040	chr19:24049548|24055982:+	ZNF254	zinc finger protein 254	protein coding gene	no	.	2.985	0.293	0.000	0.016(157)	0.009(6)	0(0)	non tumor-specific	alt_3prime	no
AC021534.1_LS002	chr17:79135086|79136018:+	AC021534.1	-	lncRNA gene	no	ENST00000583980.1	2.439	0.011	0.779	0.01(92)	0.003(2)	0.003(53)	non tumor-specific	nAS	yes
UN_DTNBP1_LS0016	chr6:15531508|15537714:+	DTNBP1	dystrobrevin binding protein 1	protein coding gene	no	.	1.222	0.041	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITIH4_LS002	chr3:52814071|52814209:-	ITIH4	inter-alpha-trypsin inhibitor heavy chain 4	protein coding gene	no	ENST00000266041.8;ENST00000485816.5;ENST00000406595.5;ENST00000441637.2;ENST00000491663.5	100.394	484.041	20.992	0.474(4538)	0.54(379)	0.971(16870)	non tumor-specific	intron_retention	yes
APC2_LS007	chr19:1453611|1455149:+	APC2	solute carrier family 25 member 23	protein coding gene	no	ENST00000587869.5;ENST00000590877.5;ENST00000590469.5;ENST00000233607.6;ENST00000593146.1;ENST00000535453.5;ENST00000238483.5	5.073	2.497	9.558	0.099(951)	0.02(14)	0.318(5530)	non tumor-specific	nAS	yes
PLXNB1_LS035	chr3:48418363|48418449:-	PLXNB1	plexin B1	protein coding gene	yes	ENST00000296440.10;ENST00000358536.8;ENST00000456774.5;ENST00000449094.5;ENST00000484485.5;ENST00000462738.1	29.876	23.540	55.925	0.971(9303)	0.99(695)	0.956(16617)	non tumor-specific	exon_skip	yes
UN_AC084125.3_UP_LS0004	chr8:144510903|144519834:+	AC084125.3	-	lncRNA gene	no	.	2.996	0.215	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
VPS13D_LS031	chr1:12314327|12318072:+	VPS13D	vacuolar protein sorting 13 homolog D	protein coding gene	no	ENST00000620676.6;ENST00000613099.4;ENST00000011700.10;ENST00000646917.1;ENST00000460333.5;ENST00000487188.1	7.706	8.268	10.801	0.801(7671)	0.933(655)	0.961(16706)	non tumor-specific	exon_skip	yes
C2orf80_LS005	chr2:208165815|208171988:-	C2orf80	chromosome 2 open reading frame 80	protein coding gene	no	ENST00000428015.5;ENST00000428015.5	0.426	0.119	10.123	0.066(631)	0.009(6)	0.143(2480)	non tumor-specific	alt_5prime;exon_skip	yes
DENND4C_LS034	chr9:19350879|19352073:+	DENND4C	DENN domain containing 4C	protein coding gene	no	ENST00000434457.6;ENST00000602925.5;ENST00000380437.8;ENST00000494124.2;ENST00000380427.5;ENST00000361024.6;ENST00000380424.1	22.141	21.062	18.607	0.931(8920)	0.983(690)	0.968(16826)	non tumor-specific	exon_skip	yes
UN_AC069154.1_UP_LS0021	chr2:119695525|119696980:+	AC069154.1	-	pseudogene	no	.	2.063	0.787	0.000	0.021(202)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_PLIN4_LS0034	chr19:4511711|4512504:-	PLIN4	perilipin 4	protein coding gene	no	.	9.865	23.836	0.000	0.003(31)	0.016(11)	0(0)	non tumor-specific	intron_retention	no
SLC52A2_LS017	chr8:144358900|144359184:+	SLC52A2	solute carrier family 52 member 2	protein coding gene	no	ENST00000527078.5;ENST00000534725.5;ENST00000527078.5;ENST00000534725.5	0.918	0.727	4.569	0.796(7624)	0.845(593)	0.919(15967)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
UN_CORO2B_UP_LS0003	chr15:68470529|68471676:+	CORO2B	coronin 2B	protein coding gene	no	.	4.392	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
SLC38A6_LS012	chr14:61015956|61019541:+	SLC38A6	solute carrier family 38 member 6	protein coding gene	no	ENST00000354886.6;ENST00000267488.8;ENST00000525723.6;ENST00000491344.7;ENST00000451406.5;ENST00000527591.5;ENST00000529345.6;ENST00000524402.6;ENST00000526105.5;ENST00000528350.5;ENST00000554072.1	4.300	2.660	8.025	0.955(9149)	0.97(681)	0.966(16786)	non tumor-specific	exon_skip	yes
UN_OTULINL_LS0004	chr5:14590793|14591552:+	OTULINL	OTU deubiquitinase with linear linkage specificity like	protein coding gene	no	.	0.375	0.293	0.000	0.006(54)	0.021(15)	0(0)	non tumor-specific	exon_skip	no
NRK_LS003	chrX:105880255|105881708:+	NRK	Nik related kinase	protein coding gene	no	ENST00000243300.13;ENST00000536164.5;ENST00000428173.3	3.568	2.594	1.046	0.097(925)	0.255(179)	0.257(4466)	non tumor-specific	exon_skip	yes
FBN1_LS059	chr15:48515527|48516183:-	FBN1	fibrillin 1	protein coding gene	no	ENST00000316623.9	13.712	11.066	6.285	0.681(6526)	0.876(615)	0.852(14814)	non tumor-specific	nAS	yes
UN_ADM2_LS0001	chr22:50481599|50481837:+	ADM2	adrenomedullin 2	protein coding gene	no	.	0.930	0.099	0.000	0.006(59)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
LRSAM1_LS009	chr9:127455054|127455576:+	LRSAM1	leucine rich repeat and sterile alpha motif containing 1	protein coding gene	no	ENST00000300417.10;ENST00000373324.8;ENST00000323301.8;ENST00000373322.1	22.398	17.402	16.729	0.968(9273)	0.99(695)	0.978(17000)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NEK7_LS0004	chr1:198157276|198253040:+	NEK7	NIMA related kinase 7	protein coding gene	no	.	1.938	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_CYHR1_LS0017	chr8:144451829|144452359:-	CYHR1	cysteine and histidine rich 1	protein coding gene	no	.	5.814	0.438	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
NTF3_LS005	chr12:5509832|5512117:+	NTF3	neurotrophin 3	protein coding gene	no	ENST00000535299.5	0.532	0.166	0.892	0.027(255)	0.009(6)	0.242(4199)	non tumor-specific	alt_5prime;exon_skip	yes
PGGHG_LS015	chr11:292677|292886:+	PGGHG	protein-glucosylgalactosylhydroxylysine glucosidase	protein coding gene	no	ENST00000474221.5;ENST00000409548.6;ENST00000409655.5;ENST00000409479.5;ENST00000476372.1	50.789	12.523	49.464	0.974(9336)	0.983(690)	0.978(17007)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
NMRK1_LS031	chr9:75087868|75088008:-	NMRK1	nicotinamide riboside kinase 1	protein coding gene	no	ENST00000490321.1	1.251	0.548	3.843	0.817(7824)	0.879(617)	0.935(16254)	non tumor-specific	intron_retention	yes
UN_IGLJ4_UP_LS0105	chr22:22901353|22906605:+	IGLJ4	immunoglobulin lambda joining 4 (non-functional)	no	no	.	1823.259	303.155	0.000	0.012(118)	0.011(8)	0(0)	non tumor-specific	nAS	no
UN_TOB1_LS0007	chr17:50863266|50863491:+	TOB1	transducer of ERBB2, 1	protein coding gene	no	.	2.183	0.605	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
HERC4_LS043	chr10:68044558|68072883:-	HERC4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	protein coding gene	no	.;.	2.886	0.998	0.000	0.021(197)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
HERC3_LS007	chr4:88598087|88605795:+	HERC3	HECT and RLD domain containing E3 ubiquitin protein ligase 3	protein coding gene	no	ENST00000431413.5;ENST00000422770.5	0.246	0.402	1.454	0.434(4158)	0.725(509)	0.701(12182)	non tumor-specific	exon_skip	yes
SMG1P4_LS025	chr16:21909939|21911235:-	SMG1P4	SMG1 pseudogene 4	pseudogene	no	ENST00000523028.5;ENST00000381448.8;ENST00000517529.1	8.738	2.334	0.628	0.906(8676)	0.906(636)	0.044(764)	non tumor-specific	nAS	yes
UN_SCG2_UP_LS0030	chr2:223717900|223720873:-	SCG2	secretogranin II	protein coding gene	no	.	3.010	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CD68_LS0007	chr17:7579726|7580711:+	CD68	CD68 molecule	protein coding gene	no	.	13.299	6.948	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
SLC43A1_LS025	chr11:57501329|57513958:-	SLC43A1	solute carrier family 43 member 1	protein coding gene	no	ENST00000278426.7;ENST00000528450.5;ENST00000530159.5;ENST00000533066.5;ENST00000533263.1;ENST00000278426.7;ENST00000528450.5;ENST00000530159.5;ENST00000533066.5;ENST00000533263.1	9.185	9.176	11.011	0.864(8274)	0.97(681)	0.953(16571)	non tumor-specific	alt_3prime;exon_skip	yes
ECD_LS007	chr10:73139737|73146276:-	ECD	SEM1 26S proteasome complex subunit	protein coding gene	no	ENST00000372979.8;ENST00000484976.6;ENST00000454759.6	56.411	32.354	30.883	0.994(9522)	0.997(700)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
STAU2_LS010	chr8:73561539|73582770:-	STAU2	staufen double-stranded RNA binding protein 2	protein coding gene	no	ENST00000518981.5	0.240	0.093	0.812	0.162(1556)	0.108(76)	0.343(5962)	non tumor-specific	exon_skip	yes
UN_RF00100_UP_LS0023	chr6:52726994|52759609:+	RF00100	-	small non-coding RNA gene	no	.	4.573	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BX322639.1_UP_LS0001	chr10:42405281|42405510:-	BX322639.1	-	pseudogene	no	.	2.114	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_PSMC1P6_UP_LS0002	chr3:87731750|87945822:-	PSMC1P6	proteasome 26S subunit, ATPase 1 pseudogene 6	pseudogene	no	.	1.956	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
GSG1_LS001	chr12:13085243|13087152:-	GSG1	trafficking protein particle complex 8	protein coding gene	no	ENST00000337630.10;ENST00000396302.7;ENST00000457134.6;ENST00000432710.6;ENST00000537302.5;ENST00000351606.10	3.334	0.468	0.970	0.039(375)	0.087(61)	0.252(4383)	non tumor-specific	nAS	yes
UN_G2E3-AS1_LS0008	chr14:30457387|30472380:-	G2E3-AS1	G2E3 antisense RNA 1	lncRNA gene	no	.	0.879	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
TMEM202-AS1_LS001	chr15:72421601|72473875:-	TMEM202-AS1	TMEM202 antisense RNA 1	lncRNA gene	no	ENST00000562573.1	1.035	0.000	0.810	0.001(5)	0(0)	0.007(130)	non tumor-specific	nAS	yes
UN_GTF2E1_LS0005	chr3:120742971|120750523:+	GTF2E1	general transcription factor IIE subunit 1	protein coding gene	no	.	0.971	0.169	0.000	0.033(319)	0.034(24)	0(0)	non tumor-specific	alt_5prime	no
FRAS1_LS075	chr4:78526657|78534449:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000512123.3	6.828	7.242	2.755	0.567(5428)	0.772(542)	0.718(12484)	non tumor-specific	exon_skip	yes
LINC01184_LS020	chr5:128082194|128082735:-	LINC01184	long intergenic non-protein coding RNA 1184	lncRNA gene	no	ENST00000508878.5	1.805	0.971	0.833	0.343(3282)	0.301(211)	0.419(7281)	non tumor-specific	nAS	yes
SNTG1_LS020	chr8:50450729|50502778:+	SNTG1	syntrophin gamma 1	protein coding gene	no	ENST00000518864.5;ENST00000642720.1;ENST00000642164.1;ENST00000642286.1;ENST00000643999.1;ENST00000522124.5;ENST00000647073.1;ENST00000644469.1;ENST00000644723.1;ENST00000517473.5;ENST00000642826.1;ENST00000643740.1;ENST00000647273.1;ENST00000520825.5	6.483	0.548	3.158	0.087(832)	0.01(7)	0.182(3168)	non tumor-specific	exon_skip	yes
AP3D1_LS025	chr19:2117367|2118601:-	AP3D1	adaptor related protein complex 3 subunit delta 1	protein coding gene	no	ENST00000345016.9;ENST00000643116.2;ENST00000355272.10;ENST00000644728.1;ENST00000591631.2;ENST00000586177.1	73.140	44.167	49.357	0.992(9500)	0.996(699)	0.979(17019)	non tumor-specific	nAS	yes
AP002478.2_LS001	chr18:3770066|3770924:-	AP002478.2	-	lncRNA gene	no	ENST00000584060.1	0.055	0.000	1.134	0(3)	0(0)	0(8)	non tumor-specific	nAS	yes
UN_ZNF785_LS0005	chr16:30578568|30579433:+	ZNF785	zinc finger protein 785	protein coding gene	no	.	1.319	0.335	0.000	0.002(21)	0.001(1)	0(0)	non tumor-specific	nAS	no
COL7A1_LS100	chr3:48584945|48585036:-	COL7A1	collagen type VII alpha 1 chain	protein coding gene	no	ENST00000328333.12	8.856	2.282	5.858	0.51(4889)	0.376(264)	0.888(15433)	non tumor-specific	exon_skip	yes
GPRC5B_LS008	chr16:19872846|19880970:-	GPRC5B	G protein-coupled receptor class C group 5 member B	protein coding gene	no	ENST00000562469.5	0.144	0.200	0.957	0.042(406)	0.031(22)	0.067(1167)	non tumor-specific	exon_skip	yes
ACAP1_LS001	chr17:7336787|7337263:+	ACAP1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein coding gene	no	ENST00000570457.6	0.037	0.040	0.953	0.209(2006)	0.209(147)	0.127(2202)	non tumor-specific	alt_3prime;exon_skip	yes
BRINP3_LS011	chr1:190477581|190478004:-	BRINP3	BMP/retinoic acid inducible neural specific 3	protein coding gene	no	ENST00000633243.1	1.485	0.078	0.911	0.004(36)	0.001(1)	0.039(683)	non tumor-specific	nAS	yes
UN_GAB2_LS0067	chr11:78280901|78365267:-	GAB2	GRB2 associated binding protein 2	protein coding gene	yes	.	1.151	0.575	0.000	0.002(17)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
AL513327.2_LS002	chr1:33359074|33363066:+	AL513327.2	-	lncRNA gene	no	ENST00000432703.1	0.253	0.027	0.673	0.016(153)	0.006(4)	0.04(697)	non tumor-specific	nAS	yes
STK11IP_LS017	chr2:219607137|219608047:+	STK11IP	serine/threonine kinase 11 interacting protein	protein coding gene	no	ENST00000456909.5;ENST00000475396.5	19.104	9.755	17.502	0.975(9344)	0.97(681)	0.978(17008)	non tumor-specific	nAS	yes
HDAC8_LS023	chrX:72474729|72488933:-	HDAC8	histone deacetylase 8	protein coding gene	no	ENST00000439122.7;ENST00000648036.1;ENST00000650126.1;ENST00000647974.1;ENST00000373559.8	3.902	2.489	2.104	0.9(8627)	0.942(661)	0.843(14659)	non tumor-specific	exon_skip	yes
SNX5_LS019	chr20:17951595|17953996:-	SNX5	sorting nexin 5	protein coding gene	no	ENST00000476648.5	0.097	0.036	0.674	0.16(1530)	0.174(122)	0.154(2683)	non tumor-specific	exon_skip	yes
UN_WDR86_LS0056	chr7:151400241|151408768:-	WDR86	WD repeat domain 86	protein coding gene	no	.	8.974	3.077	0.000	0.008(73)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
CPAMD8_LS039	chr19:16975258|16976002:-	CPAMD8	C3 and PZP like alpha-2-macroglobulin domain containing 8	protein coding gene	no	ENST00000443236.5;ENST00000593420.5	6.576	7.181	2.393	0.264(2531)	0.654(459)	0.641(11135)	non tumor-specific	exon_skip	yes
UN_BTF3L4_LS0005	chr1:52056644|52059835:+	BTF3L4	basic transcription factor 3 like 4	protein coding gene	no	.	1.493	0.085	0.000	0.007(64)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
UN_CARD8_LS0011	chr19:48195598|48195700:+	CARD8	caspase recruitment domain family member 8	protein coding gene	no	.	1.363	0.451	0.000	0.003(26)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_TPTEP2-CSNK1E_LS0075	chr22:38367787|38380370:-	TPTEP2-CSNK1E	TPTEP2-CSNK1E readthrough	protein coding gene	no	.	2.501	0.653	0.000	0.042(406)	0.033(23)	0(0)	non tumor-specific	exon_skip	no
PM20D1_LS007	chr1:205840323|205841811:-	PM20D1	peptidase M20 domain containing 1	protein coding gene	no	ENST00000367136.4;ENST00000460624.5;ENST00000461807.1	3.008	7.398	1.298	0.107(1029)	0.265(186)	0.43(7467)	non tumor-specific	exon_skip	yes
AC055855.2_LS001	chr15:66279043|66293326:-	AC055855.2	-	lncRNA gene	no	ENST00000564269.1	0.176	0.053	0.657	0.043(415)	0.05(35)	0.028(495)	non tumor-specific	nAS	yes
UN_RABEPK_LS0010	chr9:125205652|125207564:+	RABEPK	Rab9 effector protein with kelch motifs	protein coding gene	no	.	2.532	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
UN_RAB1B_LS0090	chr11:66276443|66276873:-	RAB1B	RAB1B, member RAS oncogene family	protein coding gene	no	.	8.580	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
CRELD1_LS019	chr3:9943253|9943482:+	CRELD1	cysteine rich with EGF like domains 1	protein coding gene	no	ENST00000489674.5	0.266	0.186	1.812	0.612(5861)	0.605(425)	0.795(13816)	non tumor-specific	alt_3prime;intron_retention	yes
UN_PARPBP_LS0027	chr12:102154996|102164438:+	PARPBP	PARP1 binding protein	protein coding gene	no	.	2.085	0.066	0.000	0.012(113)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_RPLP0P6_LS0043	chr2:38482088|38482255:-	RPLP0P6	ribosomal protein lateral stalk subunit P0 pseudogene 6	pseudogene	no	.	7.163	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_C9orf84_LS0026	chr9:111786035|111794900:-	C9orf84	shortage in chiasmata 1	protein coding gene	no	.	1.466	0.034	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TPM3_LS005	chr1:154159048|154170400:-	TPM3	tropomyosin 3	protein coding gene	no	ENST00000368531.6;ENST00000323144.11	0.580	6.374	2.415	0.851(8157)	0.879(617)	0.837(14545)	non tumor-specific	exon_skip	yes
UN_CCDC91_LS0079	chr12:28255662|28256002:+	CCDC91	coiled-coil domain containing 91	protein coding gene	no	.	2.021	0.000	0.000	0.005(52)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
DNAH5_LS050	chr5:13841130|13841692:-	DNAH5	dynein axonemal heavy chain 5	protein coding gene	no	ENST00000265104.4	3.864	2.201	0.935	0.116(1113)	0.234(164)	0.167(2904)	non tumor-specific	nAS	yes
AC061992.1_LS003	chr17:78362751|78367193:+	AC061992.1	-	lncRNA gene	no	ENST00000592569.1	0.953	0.032	0.785	0.04(384)	0.003(2)	0.1(1737)	non tumor-specific	nAS	yes
BDNF_LS017	chr11:27674342|27700971:-	BDNF	brain derived neurotrophic factor	protein coding gene	no	ENST00000530786.5;ENST00000438929.5;ENST00000420794.2	0.022	0.000	0.553	0.001(11)	0(0)	0(5)	non tumor-specific	nAS	yes
UN_POLDIP2_LS0078	chr17:28353356|28353695:-	POLDIP2	DNA polymerase delta interacting protein 2	protein coding gene	no	.	2.732	0.000	0.000	0.003(31)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_AC005697.2_UP_LS0015	chr17:27645881|27749808:+	AC005697.2	-	lncRNA gene	no	.	88.272	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
IPCEF1_LS019	chr6:154306768|154330021:-	IPCEF1	interaction protein for cytohesin exchange factors 1	protein coding gene	no	ENST00000422970.6	0.341	0.000	0.598	0.001(10)	0.001(1)	0.003(57)	non tumor-specific	exon_skip	yes
UN_SNRPCP8_UP_LS0022	chr3:130153583|130182747:+	SNRPCP8	small nuclear ribonucleoprotein polypeptide C pseudogene 8	pseudogene	no	.	3.010	0.290	0.000	0.003(33)	0.006(4)	0(0)	non tumor-specific	nAS	no
AC122136.1_LS001	chr2:215870145|215870264:+	AC122136.1	-	lncRNA gene	no	ENST00000443971.1	0.157	0.004	0.567	0.002(23)	0.001(1)	0.003(45)	non tumor-specific	nAS	yes
IFI35_LS005	chr17:43012277|43012942:+	IFI35	interferon induced protein 35	protein coding gene	no	ENST00000536969.1	0.084	0.930	0.803	0.457(4380)	0.509(357)	0.332(5775)	non tumor-specific	alt_3prime	yes
RBBP7_LS021	chrX:16858822|16862955:-	RBBP7	RB binding protein 7, chromatin remodeling factor	protein coding gene	yes	ENST00000404022.5;ENST00000404022.5	27.008	32.600	4.721	0.974(9331)	0.986(692)	0.949(16494)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_CHFR_LS0117	chr12:132945797|132954113:-	CHFR	checkpoint with forkhead and ring finger domains	protein coding gene	yes	.	1.487	0.401	0.000	0.015(144)	0.006(4)	0(0)	non tumor-specific	nAS	no
MTERF1_LS002	chr7:91693459|91827415:-	MTERF1	mitochondrial transcription termination factor 1	protein coding gene	no	ENST00000454222.5	0.494	0.075	0.727	0.015(143)	0.017(12)	0.137(2380)	non tumor-specific	exon_skip	yes
UN_AHDC1_LS0095	chr1:27553185|27555849:-	AHDC1	AT-hook DNA binding motif containing 1	protein coding gene	no	.	1.637	0.076	0.000	0.004(42)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_SOX13_LS0011	chr1:204114432|204116507:+	SOX13	SRY-box transcription factor 13	protein coding gene	no	.	2.278	0.053	0.000	0.003(32)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_DNMT3A_UP_LS0002	chr2:25367230|25414409:-	DNMT3A	DNA methyltransferase 3 alpha	protein coding gene	yes	.	1.838	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
CDC37L1-DT_LS002	chr9:4679165|4679387:-	CDC37L1-DT	CDC37L1 divergent transcript	lncRNA gene	no	ENST00000607997.1	0.791	0.576	2.000	0.807(7736)	0.852(598)	0.833(14476)	non tumor-specific	nAS	yes
UN_HEPH_LS0020	chrX:66193638|66195104:+	HEPH	hephaestin	protein coding gene	no	.	18.444	15.927	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
NR4A1_LS021	chr12:52051568|52054327:+	NR4A1	nuclear receptor subfamily 4 group A member 1	protein coding gene	yes	ENST00000394825.5;ENST00000550763.1;ENST00000548232.1;ENST00000394825.5;ENST00000550763.1;ENST00000548232.1;ENST00000394825.5;ENST00000550763.1;ENST00000548232.1	32.079	108.011	92.460	0.952(9123)	0.987(693)	0.971(16882)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention;mutex_exons	yes
CKAP5_LS028	chr11:46778313|46778460:-	CKAP5	cytoskeleton associated protein 5	protein coding gene	no	ENST00000529230.5;ENST00000312055.9;ENST00000354558.7	49.387	24.601	21.659	0.961(9203)	0.981(689)	0.974(16929)	non tumor-specific	alt_3prime	yes
UN_BX890604.2_LS0141	chrX:3865142|3905348:-	BX890604.2	-	lncRNA gene	no	.	2.745	0.190	0.000	0.014(136)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_C9orf64_LS0003	chr9:83939187|83939321:-	C9orf64	chromosome 9 open reading frame 64	protein coding gene	no	.	4.506	0.250	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
SYTL5_LS014	chrX:38108699|38110321:+	SYTL5	synaptotagmin like 5	protein coding gene	no	ENST00000297875.6;ENST00000456733.2	5.239	3.842	3.148	0.321(3076)	0.556(390)	0.398(6925)	non tumor-specific	nAS	yes
AL583808.1_LS002	chr1:72749276|72850750:-	AL583808.1	-	lncRNA gene	no	ENST00000445976.1	1.871	0.171	0.771	0.113(1085)	0.027(19)	0.034(588)	non tumor-specific	nAS	yes
PTPN2_LS035	chr18:12859254|12884073:-	PTPN2	protein tyrosine phosphatase non-receptor type 2	protein coding gene	yes	ENST00000327283.7;ENST00000591115.5;ENST00000353319.8;ENST00000309660.9;ENST00000645816.1;ENST00000592776.1	17.776	10.157	16.790	0.981(9403)	0.991(696)	0.976(16965)	non tumor-specific	exon_skip	yes
POLR2E_LS027	chr19:1092532|1095259:-	POLR2E	RNA polymerase II, I and III subunit E	protein coding gene	no	.;.;.	1.785	0.320	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_AMPD3_LS0022	chr11:10450265|10450288:+	AMPD3	adenosine monophosphate deaminase 3	protein coding gene	no	.	0.874	0.044	0.000	0.004(37)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AL121894.1_UP_LS0027	chr20:23689001|23689314:-	AL121894.1	-	lncRNA gene	no	.	1.331	0.191	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_SEPT6_LS0030	chrX:119675668|119686560:-	SEPT6	septin 6	protein coding gene	no	.	1.699	0.001	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
UN_LINC02026_LS0006	chr3:193979796|193980616:-	LINC02026	long intergenic non-protein coding RNA 2026	lncRNA gene	no	.	1.233	0.507	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
CIB4_LS006	chr2:26595317|26629410:-	CIB4	calcium and integrin binding family member 4	protein coding gene	no	ENST00000288861.4	1.906	0.907	0.785	0.045(430)	0.1(70)	0.141(2448)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AL390719.1_LS0032	chr1:1064780|1065352:+	AL390719.1	-	pseudogene	no	.	4.214	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
PSEN2_LS006	chr1:226875550|226881888:+	PSEN2	presenilin 2	protein coding gene	no	ENST00000524196.5;ENST00000366783.7;ENST00000495488.5;ENST00000422240.6	16.453	11.754	17.120	0.98(9393)	0.994(698)	0.975(16953)	non tumor-specific	exon_skip	yes
UN_EPB41L4A_LS0038	chr5:112234749|112239660:-	EPB41L4A	erythrocyte membrane protein band 4.1 like 4A	protein coding gene	no	.	3.612	0.460	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SATB1-AS1_LS066	chr3:18697975|18745954:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000425799.6	2.557	0.000	0.729	0.046(439)	0(0)	0.001(21)	non tumor-specific	nAS	yes
IQGAP2_LS045	chr5:76693442|76695454:+	IQGAP2	IQ motif containing GTPase activating protein 2	protein coding gene	yes	ENST00000274364.10;ENST00000505766.5;ENST00000379730.7;ENST00000396234.7;ENST00000502745.5;ENST00000504477.5;ENST00000512256.1	50.223	59.175	12.655	0.946(9068)	0.981(689)	0.889(15448)	non tumor-specific	nAS	yes
ESPL1_LS006	chr12:53270482|53270678:+	ESPL1	extra spindle pole bodies like 1, separase	protein coding gene	yes	ENST00000257934.8;ENST00000552671.5;ENST00000552462.1	4.807	1.030	1.342	0.551(5283)	0.174(122)	0.341(5935)	non tumor-specific	exon_skip	yes
UN_FGF12_LS0008	chr3:192170656|192170842:-	FGF12	fibroblast growth factor 12	protein coding gene	no	.	2.511	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_5prime	no
UN_RB1CC1_LS0045	chr8:52744778|52744927:+	RB1CC1	RB1 inducible coiled-coil 1	protein coding gene	yes	.	2.391	0.108	0.000	0.007(68)	0.001(1)	0(0)	non tumor-specific	nAS	no
KIF1B_LS039	chr1:10337203|10337371:+	KIF1B	kinesin family member 1B	protein coding gene	yes	ENST00000263934.10;ENST00000377086.5;ENST00000377081.5;ENST00000620295.2;ENST00000622724.3	10.266	9.192	8.034	0.792(7590)	0.915(642)	0.963(16738)	non tumor-specific	exon_skip	yes
ZRANB3_LS018	chr2:135269141|135271768:-	ZRANB3	zinc finger RANBP2-type containing 3	protein coding gene	no	ENST00000401392.5;ENST00000264159.10	2.324	0.957	1.275	0.551(5275)	0.566(397)	0.659(11449)	non tumor-specific	exon_skip	yes
UN_GOLGA7B_LS0002	chr10:97850315|97859473:+	GOLGA7B	golgin A7 family member B	protein coding gene	no	.	2.108	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
UN_BCL9L_LS0022	chr11:118896550|118896594:+	BCL9L	BCL9 like	protein coding gene	yes	.	2.192	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
VWA3A_LS050	chr16:22152634|22155567:+	VWA3A	von Willebrand factor A domain containing 3A	protein coding gene	no	ENST00000389398.9;ENST00000299840.10;ENST00000563755.1	4.767	1.893	1.791	0.106(1013)	0.117(82)	0.582(10118)	non tumor-specific	exon_skip	yes
RNF103-CHMP3_LS005	chr2:86542312|86620330:-	RNF103-CHMP3	RNF103-CHMP3 readthrough	protein coding gene	no	ENST00000604011.5;ENST00000440757.2	0.398	0.307	1.370	0.904(8659)	0.936(657)	0.587(10199)	non tumor-specific	nAS	yes
DGCR8_LS004	chr22:20087321|20089669:+	DGCR8	DGCR8 microprocessor complex subunit	protein coding gene	no	ENST00000351989.7;ENST00000383024.6;ENST00000495826.5;ENST00000407755.1;ENST00000498171.5	16.009	10.459	19.604	0.973(9321)	0.989(694)	0.974(16930)	non tumor-specific	exon_skip	yes
ADD2_LS012	chr2:70677781|70692547:-	ADD2	adducin 2	protein coding gene	no	ENST00000522886.5	0.280	0.000	0.819	0.047(451)	0(0)	0.013(229)	non tumor-specific	nAS	yes
DMPK_LS031	chr19:45779522|45779778:-	DMPK	DM1 protein kinase	protein coding gene	no	ENST00000291270.8;ENST00000588522.5;ENST00000600757.5;ENST00000343373.8;ENST00000447742.6;ENST00000458663.6;ENST00000618091.4;ENST00000354227.9;ENST00000598180.1;ENST00000596067.1	23.953	33.246	123.157	0.983(9421)	0.989(694)	0.979(17017)	non tumor-specific	nAS	yes
AL162431.1_LS004	chr1:180908771|180908873:+	AL162431.1	-	lncRNA gene	no	ENST00000434447.5;ENST00000422858.1	0.370	0.021	0.669	0.024(227)	0.003(2)	0.041(711)	non tumor-specific	nAS	yes
AC008147.2_LS001	chr12:50190261|50191333:-	AC008147.2	-	lncRNA gene	no	ENST00000552061.1	0.073	0.039	0.602	0.037(353)	0.053(37)	0.005(83)	non tumor-specific	nAS	yes
UN_TMX4_LS0009	chr20:7982616|7983794:-	TMX4	thioredoxin related transmembrane protein 4	protein coding gene	no	.	14.519	1.228	0.000	0.008(80)	0.007(5)	0(0)	non tumor-specific	alt_3prime	no
CCDC158_LS001	chr4:76313246|76323302:-	CCDC158	coiled-coil domain containing 158	protein coding gene	no	ENST00000504667.2;ENST00000388914.7	2.813	0.134	0.719	0.001(13)	0.003(2)	0.104(1808)	non tumor-specific	nAS	yes
UN_TAF11_LS0009	chr6:34883610|34887787:-	TAF11	TATA-box binding protein associated factor 11	protein coding gene	no	.	1.923	0.339	0.000	0.004(35)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
PLPPR1_LS007	chr9:101286236|101309211:+	PLPPR1	phospholipid phosphatase related 1	protein coding gene	no	ENST00000374874.7;ENST00000395056.2;ENST00000463206.1	9.178	8.508	4.328	0.325(3115)	0.581(408)	0.315(5467)	non tumor-specific	exon_skip	yes
UN_SERPINA3_LS0036	chr14:94617930|94619311:-	SERPINA3	serpin family A member 3	protein coding gene	no	.	1.949	0.626	0.000	0.002(17)	0.006(4)	0(0)	non tumor-specific	nAS	no
UN_BGN_LS0236	chrX:153508974|153509433:-	BGN	biglycan	protein coding gene	no	.	3.582	0.104	0.000	0.004(36)	0.001(1)	0(0)	non tumor-specific	nAS	no
GSTA2_LS005	chr6:52756309|52757861:-	GSTA2	glutathione S-transferase alpha 2	protein coding gene	no	ENST00000493422.2	34.175	144.566	2.565	0.362(3471)	0.652(458)	0.174(3017)	non tumor-specific	nAS	yes
AC096564.1_LS001	chr4:107867645|107873330:-	AC096564.1	-	lncRNA gene	no	ENST00000499098.1	1.036	0.000	0.691	0(1)	0(0)	0.034(595)	non tumor-specific	nAS	yes
UN_YIPF2_LS0017	chr19:10927970|10928564:+	YIPF2	Yip1 domain family member 2	protein coding gene	no	.	0.250	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC108751.4_UP_LS0001	chr3:149387826|149390330:-	AC108751.4	-	lncRNA gene	no	.	4.729	1.132	0.000	0.092(880)	0.075(53)	0(0)	non tumor-specific	nAS	no
UN_AHNAK_LS0259	chr11:62520060|62525173:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.384	0.710	0.000	0.003(32)	0.004(3)	0(0)	non tumor-specific	nAS	no
DGLUCY_LS016	chr14:91114528|91157639:+	DGLUCY	D-glutamate cyclase	protein coding gene	no	ENST00000521081.5;ENST00000518649.5;ENST00000428926.6	0.658	0.453	3.428	0.823(7885)	0.883(620)	0.899(15619)	non tumor-specific	alt_5prime;exon_skip	yes
UN_DHX8_LS0025	chr17:43524137|43524650:-	DHX8	DEAH-box helicase 8	protein coding gene	no	.	0.786	0.287	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
AC112695.1_LS002	chr4:92300885|92304053:-	AC112695.1	-	lncRNA gene	no	ENST00000504213.1	0.537	0.000	0.942	0.008(73)	0(0)	0.003(55)	non tumor-specific	nAS	yes
UN_MRPL2_LS0015	chr6:43059522|43059783:-	MRPL2	mitochondrial ribosomal protein L2	protein coding gene	no	.	0.431	0.206	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TBC1D1_LS0017	chr4:38001288|38014509:+	TBC1D1	TBC1 domain family member 1	protein coding gene	yes	.	1.804	0.375	0.000	0.008(73)	0.011(8)	0(0)	non tumor-specific	nAS	no
USP24_LS010	chr1:55078651|55079538:-	USP24	ubiquitin specific peptidase 24	protein coding gene	no	ENST00000294383.6	29.725	20.412	25.734	0.93(8910)	0.966(678)	0.978(17007)	non tumor-specific	exon_skip	yes
UN_TOLLIP_UP_LS0001	chr11:1336240|1336505:-	TOLLIP	toll interacting protein	protein coding gene	no	.	3.161	0.102	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TBX1_LS0022	chr22:19765113|19765701:+	TBX1	T-box transcription factor 1	protein coding gene	no	.	4.002	2.985	0.000	0.002(17)	0.009(6)	0(0)	non tumor-specific	alt_3prime;alt_5prime;intron_retention	no
PKHD1L1_LS073	chr8:109508264|109510777:+	PKHD1L1	PKHD1 like 1	protein coding gene	no	ENST00000378402.9;ENST00000526472.1	9.943	10.329	3.839	0.099(944)	0.37(260)	0.665(11556)	non tumor-specific	nAS	yes
UN_NTHL1_LS0012	chr16:2046391|2047709:-	NTHL1	nth like DNA glycosylase 1	protein coding gene	no	.	2.305	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_FLII_LS0030	chr17:18247085|18247169:-	FLII	FLII actin remodeling protein	protein coding gene	no	.	17.110	6.030	0.000	0.003(27)	0.006(4)	0(0)	non tumor-specific	alt_3prime	no
STRIP2_LS003	chr7:129444098|129451613:+	STRIP2	striatin interacting protein 2	protein coding gene	no	ENST00000249344.6;ENST00000435494.2	4.324	2.716	2.125	0.448(4296)	0.231(162)	0.674(11713)	non tumor-specific	alt_3prime;exon_skip	yes
C3orf35_LS012	chr3:37417492|37417667:+	C3orf35	chromosome 3 open reading frame 35	lncRNA gene	no	ENST00000332506.7	1.981	0.000	0.708	0.002(18)	0(0)	0.161(2802)	non tumor-specific	intron_retention	yes
PSMA2_LS002	chr7:42917835|42921858:-	PSMA2	proteasome 20S subunit alpha 2	protein coding gene	no	ENST00000223321.8;ENST00000436986.5;ENST00000457444.5;ENST00000445517.1	570.100	264.035	220.704	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	nAS	yes
UN_LRAT_LS0003	chr4:154636396|154646694:+	LRAT	lecithin retinol acyltransferase	protein coding gene	no	.	1.285	0.142	0.000	0.004(39)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
UN_AC009133.6_LS0003	chr16:29814853|29814919:-	AC009133.6	-	protein coding gene	no	.	5.214	3.369	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
PRKAB1_LS004	chr12:119669926|119672301:+	PRKAB1	protein kinase AMP-activated non-catalytic subunit beta 1	protein coding gene	no	ENST00000540121.5	0.030	0.030	0.631	0.638(6108)	0.712(500)	0.004(74)	non tumor-specific	nAS	yes
UN_FAM83D_LS0001	chr20:38926541|38926608:-	FAM83D	family with sequence similarity 83 member D	protein coding gene	yes	.	3.848	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
SERINC5_LS018	chr5:80150948|80158836:-	SERINC5	serine incorporator 5	protein coding gene	no	ENST00000509193.5;ENST00000632581.1;ENST00000512972.6;ENST00000507668.6	33.397	25.320	6.679	0.95(9105)	0.981(689)	0.953(16567)	non tumor-specific	nAS	yes
UN_PHGDH_LS0008	chr1:119712154|119712785:-	PHGDH	phosphoglycerate dehydrogenase	protein coding gene	no	.	1.178	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
RRN3_LS007	chr16:15071251|15072950:-	RRN3	RRN3 homolog, RNA polymerase I transcription factor	protein coding gene	no	ENST00000198767.10;ENST00000563559.5;ENST00000429751.6;ENST00000327307.11	32.647	20.189	17.625	0.971(9302)	0.989(694)	0.973(16917)	non tumor-specific	exon_skip	yes
ROCK1_LS009	chr18:20967076|20967752:-	ROCK1	Rho associated coiled-coil containing protein kinase 1	protein coding gene	yes	ENST00000399799.2;ENST00000635540.1	45.465	31.412	44.011	0.965(9246)	0.989(694)	0.979(17015)	non tumor-specific	exon_skip	yes
UN_UBL4A_LS0027	chrX:154484484|154484631:+	UBL4A	ubiquitin like 4A	protein coding gene	no	.	1.653	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
LRP1B_LS032	chr2:140450661|140456455:-	LRP1B	LDL receptor related protein 1B	protein coding gene	yes	ENST00000389484.7	4.790	1.753	1.894	0.088(847)	0.142(100)	0.322(5605)	non tumor-specific	nAS	yes
WRN_LS029	chr8:31142701|31143550:+	WRN	WRN RecQ like helicase	protein coding gene	no	ENST00000298139.5;ENST00000521620.5	10.703	5.884	7.374	0.913(8743)	0.969(680)	0.952(16550)	non tumor-specific	nAS	yes
UN_PRTFDC1_LS0011	chr10:24937367|24938540:-	PRTFDC1	phosphoribosyl transferase domain containing 1	protein coding gene	no	.	3.149	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PAN2_LS035	chr12:56326409|56326617:-	PAN2	retinol dehydrogenase 14	protein coding gene	no	ENST00000425394.6;ENST00000610546.4;ENST00000551359.5;ENST00000440411.7;ENST00000257931.9;ENST00000548043.5;ENST00000547994.5	13.677	8.298	33.077	0.937(8976)	0.977(686)	0.977(16988)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC02568_LS0003	chr15:63394911|63395605:+	LINC02568	long intergenic non-protein coding RNA 2568	lncRNA gene	no	.	1.456	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TRMT112_LS0002	chr11:64316893|64317070:+	TRMT112	tRNA methyltransferase subunit 11-2	protein coding gene	no	.	13.446	0.066	0.000	0.003(25)	0.003(2)	0(0)	non tumor-specific	nAS	no
SCN3A_LS005	chr2:165095648|165096467:-	SCN3A	sodium voltage-gated channel alpha subunit 3	protein coding gene	no	ENST00000360093.7;ENST00000640652.1;ENST00000283254.11;ENST00000638473.1;ENST00000409101.7;ENST00000471697.1	3.471	0.968	1.748	0.163(1564)	0.346(243)	0.588(10224)	non tumor-specific	nAS	yes
IRF7_LS012	chr11:614037|614174:-	IRF7	interferon regulatory factor 7	protein coding gene	no	ENST00000528413.6;ENST00000397574.7;ENST00000397566.5;ENST00000525445.6;ENST00000330243.9	28.451	10.292	7.561	0.981(9403)	0.987(693)	0.957(16643)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
CNOT1_LS018	chr16:58534395|58536968:-	CNOT1	CCR4-NOT transcription complex subunit 1	protein coding gene	no	ENST00000568917.1	38.052	22.808	7.246	0.95(9103)	0.946(664)	0.944(16409)	non tumor-specific	alt_5prime	yes
UN_IRF2BP2_UP_LS0012	chr1:234689130|234712960:-	IRF2BP2	interferon regulatory factor 2 binding protein 2	protein coding gene	no	.	1.639	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ARHGAP32_LS0051	chr11:129164427|129267237:-	ARHGAP32	Rho GTPase activating protein 32	protein coding gene	no	.	2.668	0.205	0.000	0.004(35)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_MGMT_LS0029	chr10:129646834|129707895:+	MGMT	O-6-methylguanine-DNA methyltransferase	protein coding gene	no	.	3.334	0.928	0.000	0.035(332)	0.04(28)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TRIM16L_LS004	chr17:18699457|18701357:+	TRIM16L	tripartite motif containing 16 like	protein coding gene	no	ENST00000572555.5;ENST00000449697.7;ENST00000571708.5	2.361	1.697	3.382	0.808(7745)	0.922(647)	0.915(15896)	non tumor-specific	alt_3prime;exon_skip	yes
SATB1-AS1_LS028	chr3:18527326|18528076:+	SATB1-AS1	SATB1 antisense RNA 1	lncRNA gene	no	ENST00000627157.2;ENST00000629177.2	0.144	0.000	0.802	0.01(93)	0.001(1)	0.007(120)	non tumor-specific	nAS	yes
UN_DYNC1H1_LS0059	chr14:102048031|102048516:+	DYNC1H1	dynein cytoplasmic 1 heavy chain 1	protein coding gene	no	.	25.845	13.860	0.000	0.004(41)	0.007(5)	0(0)	non tumor-specific	alt_5prime	no
UN_AC078882.1_UP_LS0024	chr2:142869594|142870512:-	AC078882.1	-	lncRNA gene	no	.	6.313	0.759	0.000	0.009(87)	0.007(5)	0(0)	non tumor-specific	nAS	no
BBX_LS029	chr3:107684709|107744630:+	BBX	BBX high mobility group box domain containing	protein coding gene	no	ENST00000472032.1	0.640	0.000	0.635	0.003(31)	0.001(1)	0(8)	non tumor-specific	nAS	yes
UN_MUC1_LS0061	chr1:155188237|155188311:+	MUC1	mucin 1, cell surface associated	protein coding gene	yes	.	1.279	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ATF7_LS018	chr12:53601021|53625951:-	ATF7	activating transcription factor 7	protein coding gene	no	ENST00000456903.8;ENST00000551480.2;ENST00000588078.5;ENST00000548118.6	2.302	1.448	4.527	0.942(9029)	0.956(671)	0.95(16506)	non tumor-specific	nAS	yes
UN_TMOD3_LS0065	chr15:51938285|51947292:-	TMOD3	tropomodulin 3	protein coding gene	no	.	12.856	0.862	0.000	0.014(131)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
NAMPT_LS010	chr7:106269312|106272530:-	NAMPT	nicotinamide phosphoribosyltransferase	protein coding gene	no	ENST00000222553.7;ENST00000354289.8;ENST00000491027.5;ENST00000484527.5	109.874	83.322	72.157	0.987(9452)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_CRYBG2_LS0074	chr1:26356522|26358871:-	CRYBG2	crystallin beta-gamma domain containing 2	protein coding gene	no	.	0.763	0.226	0.000	0.012(114)	0.023(16)	0(0)	non tumor-specific	nAS	no
TBC1D32_LS019	chr6:121161056|121223236:-	TBC1D32	TBC1 domain family member 32	protein coding gene	no	ENST00000398197.6	0.439	0.054	0.659	0.026(252)	0.02(14)	0.068(1181)	non tumor-specific	exon_skip	yes
UN_AL365259.1_LS0014	chr6:125657466|125705045:-	AL365259.1	-	lncRNA gene	no	.	3.108	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
FAM57A_LS008	chr17:738047|741301:+	FAM57A	TLC domain containing 3A	protein coding gene	no	ENST00000301324.8	0.611	0.508	1.066	0.804(7706)	0.736(517)	0.356(6187)	non tumor-specific	exon_skip	yes
UN_KRT18P13_UP_LS0002	chr9:97672781|97682377:+	KRT18P13	keratin 18 pseudogene 13	pseudogene	no	.	0.794	0.003	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_RPL4_LS0010	chr15:66499438|66499508:+	RPL4	ribosomal protein L4	protein coding gene	no	.	54.921	8.216	0.000	0.06(574)	0.023(16)	0(0)	non tumor-specific	nAS	no
DOCK6_LS030	chr19:11223106|11227337:-	DOCK6	dedicator of cytokinesis 6	protein coding gene	no	ENST00000294618.11;ENST00000587656.5;ENST00000294618.11;ENST00000587656.5	21.243	13.676	22.458	0.938(8986)	0.979(687)	0.954(16581)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MAGI3_LS0039	chr1:113610754|113614601:+	MAGI3	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein coding gene	no	.	0.607	0.382	0.000	0.005(47)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
STAB2_LS021	chr12:103669627|103670696:+	STAB2	stabilin 2	protein coding gene	no	ENST00000388887.6	2.461	1.889	0.994	0.006(55)	0.101(71)	0.158(2753)	non tumor-specific	nAS	yes
SPAG1_LS020	chr8:100239404|100240403:+	SPAG1	sperm associated antigen 1	protein coding gene	no	ENST00000251809.4;ENST00000388798.6;ENST00000519424.1	13.901	8.507	5.991	0.96(9201)	0.979(687)	0.944(16406)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_AC106782.1_LS0006	chr16:30206202|30206349:-	AC106782.1	-	pseudogene	no	.	1.781	2.384	0.000	0.002(22)	0.006(4)	0(0)	non tumor-specific	intron_retention	no
UN_C6orf203_UP_LS0041	chr6:106970584|107005024:+	C6orf203	mitochondrial transcription rescue factor 1	protein coding gene	no	.	41.773	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EGLN3_LS0046	chr14:33973779|33987012:-	EGLN3	egl-9 family hypoxia inducible factor 3	protein coding gene	yes	.	3.075	0.123	0.000	0.007(69)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
NXPE1_LS018	chr11:114552880|114559798:-	NXPE1	neurexophilin and PC-esterase domain family member 1	protein coding gene	no	ENST00000534921.2;ENST00000251921.6	1.842	7.184	3.527	0.047(455)	0.075(53)	0.054(934)	non tumor-specific	exon_skip	yes
MAPK9_LS006	chr5:180241155|180248973:-	MAPK9	mitogen-activated protein kinase 9	protein coding gene	yes	ENST00000347470.8	0.050	0.018	0.679	0.068(650)	0.057(40)	0.029(497)	non tumor-specific	nAS	yes
TTK_LS006	chr6:80005982|80007809:+	TTK	TTK protein kinase	protein coding gene	no	ENST00000509894.5;ENST00000230510.7;ENST00000369798.6;ENST00000502580.5;ENST00000511260.5;ENST00000504040.1;ENST00000430061.2	4.303	0.883	1.220	0.737(7062)	0.38(267)	0.292(5068)	non tumor-specific	exon_skip	yes
UN_PUF60_LS0082	chr8:143827699|143828984:-	PUF60	poly(U) binding splicing factor 60	protein coding gene	no	.	0.959	0.288	0.000	0.004(35)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention;mutex_exons	no
RSF1_LS009	chr11:77693611|77698487:-	RSF1	remodeling and spacing factor 1	protein coding gene	yes	ENST00000308488.10;ENST00000480887.5;ENST00000531026.5;ENST00000526324.5;ENST00000531768.1;ENST00000532556.1	26.374	18.116	14.475	0.971(9307)	0.99(695)	0.977(16984)	non tumor-specific	exon_skip	yes
CWF19L1_LS016	chr10:100253539|100260966:-	CWF19L1	CWF19 like cell cycle control factor 1	protein coding gene	no	ENST00000482452.5	2.273	0.116	0.650	0.001(12)	0.001(1)	0.116(2016)	non tumor-specific	exon_skip	yes
UN_GCC2_LS0021	chr2:108485908|108486499:+	GCC2	GRIP and coiled-coil domain containing 2	protein coding gene	no	.	3.997	0.980	0.000	0.036(348)	0.036(25)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
TMEM82_LS004	chr1:15743194|15744160:+	TMEM82	transmembrane protein 82	protein coding gene	no	ENST00000375782.1;ENST00000465575.1	6.848	20.362	12.032	0.181(1735)	0.33(232)	0.063(1094)	non tumor-specific	exon_skip	yes
KIF20B_LS033	chr10:89768391|89768738:+	KIF20B	kinesin family member 20B	protein coding gene	no	ENST00000260753.8;ENST00000371728.7;ENST00000478929.1	17.218	4.147	4.240	0.942(9027)	0.915(642)	0.916(15915)	non tumor-specific	nAS	yes
ABHD12B_LS023	chr14:50903467|50904006:+	ABHD12B	abhydrolase domain containing 12B	protein coding gene	no	ENST00000553715.1	0.285	0.070	0.713	0.018(170)	0.009(6)	0.083(1448)	non tumor-specific	alt_3prime;intron_retention	yes
UN_HNRNPH1_LS0023	chr5:179619483|179620892:-	HNRNPH1	heterogeneous nuclear ribonucleoprotein H1	protein coding gene	no	.	12.077	1.774	0.000	0.001(12)	0.003(2)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_GRIN2D_UP_LS0009	chr19:48393868|48394658:+	GRIN2D	glutamate ionotropic receptor NMDA type subunit 2D	protein coding gene	no	.	0.834	0.129	0.000	0.04(383)	0.003(2)	0(0)	non tumor-specific	nAS	no
RANBP17_LS002	chr5:170863685|170878097:+	RANBP17	RAN binding protein 17	protein coding gene	no	ENST00000519944.1	0.058	0.000	0.561	0.015(146)	0.01(7)	0(6)	non tumor-specific	nAS	yes
ALYREF_LS011	chr17:81890820|81891323:-	ALYREF	Aly/REF export factor	protein coding gene	no	ENST00000505490.2;ENST00000512673.1	23.666	12.636	34.350	0.961(9209)	0.966(678)	0.979(17020)	non tumor-specific	nAS	yes
GMFB_LS002	chr14:54479859|54480874:-	GMFB	glia maturation factor beta	protein coding gene	no	ENST00000358056.7;ENST00000616146.4;ENST00000628554.2;ENST00000554163.5;ENST00000554247.5;ENST00000553333.1	35.517	27.213	23.570	0.992(9500)	0.996(699)	0.977(16990)	non tumor-specific	exon_skip;intron_retention	yes
AC021752.1_LS008	chr15:50891077|50908552:-	AC021752.1	-	lncRNA gene	no	ENST00000613161.4	1.716	0.448	0.821	0.008(76)	0.007(5)	0.344(5984)	non tumor-specific	nAS	yes
UN_SDHAP1_LS0027	chr3:195965542|195967077:-	SDHAP1	succinate dehydrogenase complex flavoprotein subunit A pseudogene 1	pseudogene	no	.	2.133	0.036	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	nAS	no
ABI3BP_LS038	chr3:100818581|100820220:-	ABI3BP	ABI family member 3 binding protein	protein coding gene	no	ENST00000471714.5;ENST00000495591.5;ENST00000495063.5	1.883	3.732	12.113	0.169(1620)	0.61(428)	0.836(14532)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
HRK_LS008	chr12:116869655|116876691:-	HRK	harakiri, BCL2 interacting protein	protein coding gene	no	ENST00000586941.1	0.066	0.000	0.627	0.004(34)	0(0)	0(2)	non tumor-specific	nAS	yes
LINC00933_LS007	chr15:84573251|84577948:+	LINC00933	long intergenic non-protein coding RNA 933	pseudogene	no	ENST00000557887.1	0.591	0.368	1.294	0.198(1900)	0.352(247)	0.568(9876)	non tumor-specific	nAS	yes
LINC01701_LS002	chr1:189777337|189791579:+	LINC01701	long intergenic non-protein coding RNA 1701	lncRNA gene	no	ENST00000419614.1	0.827	0.016	0.687	0.008(77)	0.001(1)	0.016(277)	non tumor-specific	nAS	yes
ZNF418_LS019	chr19:57932646|57933817:-	ZNF418	zinc finger protein 418	protein coding gene	no	ENST00000425570.7;ENST00000595569.1	0.078	0.028	0.815	0.128(1228)	0.14(98)	0.357(6202)	non tumor-specific	exon_skip	yes
TARBP1_LS042	chr1:234472811|234478173:-	TARBP1	TAR (HIV-1) RNA binding protein 1	protein coding gene	no	ENST00000040877.1	1.857	0.854	3.585	0.766(7343)	0.815(572)	0.877(15243)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RCOR3_LS0017	chr1:211271309|211271497:+	RCOR3	REST corepressor 3	protein coding gene	no	.	0.904	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_C11orf53_UP_LS0017	chr11:111020664|111024375:+	C11orf53	chromosome 11 open reading frame 53	protein coding gene	no	.	2.890	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
AL442663.3_LS001	chr14:73058784|73059276:-	AL442663.3	-	lncRNA gene	no	ENST00000554737.2	0.254	0.288	0.776	0.071(681)	0.14(98)	0.07(1210)	non tumor-specific	nAS	yes
UN_GNL3_LS0004	chr3:52684914|52685436:-	GNL3	G protein nucleolar 3	protein coding gene	no	.	2.982	1.134	0.000	0.122(1166)	0.11(77)	0(0)	non tumor-specific	exon_skip	no
NMNAT3_LS002	chr3:139561392|139573598:-	NMNAT3	nicotinamide nucleotide adenylyltransferase 3	protein coding gene	no	ENST00000506254.5;ENST00000339837.9;ENST00000643695.1;ENST00000646611.1;ENST00000296202.11;ENST00000507242.5	10.107	8.149	6.565	0.831(7958)	0.952(668)	0.929(16140)	non tumor-specific	exon_skip	yes
UN_AHNAK_LS0832	chr11:62523013|62525360:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	3.305	0.514	0.000	0.002(19)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC016687.3_UP_LS0013	chr4:34101934|34121083:-	AC016687.3	-	lncRNA gene	no	.	1.885	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
UN_KCNH1_LS0018	chr1:211133601|211133707:-	KCNH1	potassium voltage-gated channel subfamily H member 1	protein coding gene	no	.	3.251	0.000	0.000	0.006(57)	0(0)	0(0)	non tumor-specific	nAS	no
UGP2_LS001	chr2:63841232|63842059:+	UGP2	UDP-glucose pyrophosphorylase 2	protein coding gene	no	ENST00000484142.1	0.018	0.041	0.805	0.289(2766)	0.359(252)	0.342(5936)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
POU2F3_LS005	chr11:120269244|120298265:+	POU2F3	POU class 2 homeobox 3	protein coding gene	yes	ENST00000260264.8;ENST00000543440.6;ENST00000533620.5	2.492	1.278	1.488	0.215(2057)	0.447(314)	0.323(5619)	non tumor-specific	exon_skip	yes
ADGRG6_LS034	chr6:142438364|142443341:+	ADGRG6	adhesion G protein-coupled receptor G6	protein coding gene	no	.;.	4.626	1.422	0.000	0.003(25)	0.007(5)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UN_RF00019_UP_LS1841	chr7:75327763|75348697:-	RF00019	-	small non-coding RNA gene	no	.	1.754	0.120	0.000	0.003(29)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MAST4_LS0083	chr5:67165324|67165402:+	MAST4	microtubule associated serine/threonine kinase family member 4	protein coding gene	no	.	4.315	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ESYT2_LS0037	chr7:158757433|158759486:-	ESYT2	extended synaptotagmin 2	protein coding gene	no	.	6.788	6.815	0.000	0.002(19)	0.009(6)	0(0)	non tumor-specific	exon_skip	no
OSBPL10_LS017	chr3:31748120|31876433:-	OSBPL10	oxysterol binding protein like 10	protein coding gene	no	ENST00000438237.6;ENST00000480671.5	0.972	0.629	1.076	0.655(6278)	0.751(527)	0.501(8717)	non tumor-specific	exon_skip	yes
UN_BDH1_LS0023	chr3:197512069|197514347:+	BDH1	3-hydroxybutyrate dehydrogenase 1	protein coding gene	no	.	0.962	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
STAB2_LS040	chr12:103706987|103708441:+	STAB2	stabilin 2	protein coding gene	no	ENST00000388887.6	2.238	2.313	0.947	0.011(103)	0.152(107)	0.15(2604)	non tumor-specific	nAS	yes
UN_ATG4A_UP_LS0005	chrX:108018978|108058038:+	ATG4A	autophagy related 4A cysteine peptidase	protein coding gene	no	.	2.810	0.309	0.000	0.022(210)	0.003(2)	0(0)	non tumor-specific	nAS	no
CAPN9_LS008	chr1:230772099|230774554:+	CAPN9	calpain 9	protein coding gene	no	ENST00000271971.6;ENST00000366666.6	5.232	7.021	1.371	0.249(2389)	0.379(266)	0.291(5060)	non tumor-specific	exon_skip;mutex_exons	yes
CDS2_LS009	chr20:5176745|5178817:+	CDS2	CDP-diacylglycerol synthase 2	protein coding gene	no	ENST00000460006.5;ENST00000467923.5;ENST00000450570.1;ENST00000468817.5;ENST00000379070.3	49.156	29.665	33.885	0.989(9471)	0.997(700)	0.979(17019)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PCBD2_LS0120	chr5:134927270|134927828:+	PCBD2	pterin-4 alpha-carbinolamine dehydratase 2	protein coding gene	no	.	1.126	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_DLK2_LS0003	chr6:43451994|43453976:+	DLK2	delta like non-canonical Notch ligand 2	protein coding gene	no	.	2.096	0.570	0.000	0.083(796)	0.05(35)	0(0)	non tumor-specific	nAS	no
UN_ZNF7_UP_LS0008	chr8:144811412|144811762:+	ZNF7	zinc finger protein 7	protein coding gene	no	.	1.461	0.000	0.000	0.003(29)	0(0)	0(0)	non tumor-specific	nAS	no
AC109446.3_LS001	chr16:17134550|17137516:+	AC109446.3	-	lncRNA gene	no	ENST00000567344.1	0.770	0.377	0.723	0.07(671)	0.06(42)	0.113(1972)	non tumor-specific	nAS	yes
DNAH1_LS081	chr3:52397877|52398032:+	DNAH1	dynein axonemal heavy chain 1	protein coding gene	no	ENST00000486752.5;ENST00000420323.6;ENST00000488988.5	6.291	3.226	14.228	0.57(5460)	0.548(385)	0.977(16977)	non tumor-specific	exon_skip	yes
UN_PSMD3_LS0083	chr17:39997747|39997799:-	PSMD3	proteasome 26S subunit, non-ATPase 3	protein coding gene	no	.	12.983	1.621	0.000	0.008(77)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_HNRNPK_LS0073	chr9:83978298|83978373:-	HNRNPK	heterogeneous nuclear ribonucleoprotein K	protein coding gene	no	.	38.668	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	alt_3prime	no
CEP85_LS003	chr1:26239838|26255171:+	CEP85	centrosomal protein 85	protein coding gene	no	ENST00000640292.2	0.110	0.028	0.642	0.051(485)	0.04(28)	0.027(471)	non tumor-specific	exon_skip	yes
UN_DDX60L_LS0044	chr4:168441492|168453124:-	DDX60L	DExD/H-box 60 like	protein coding gene	no	.	2.803	0.043	0.000	0.012(113)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CPZ_LS004	chr4:8592921|8601123:+	CPZ	carboxypeptidase Z	protein coding gene	no	ENST00000315782.6	0.746	0.593	1.508	0.565(5410)	0.655(460)	0.417(7243)	non tumor-specific	nAS	yes
ANKS1B_LS046	chr12:99504641|99655067:-	ANKS1B	ankyrin repeat and sterile alpha motif domain containing 1B	protein coding gene	no	ENST00000547776.6;ENST00000547010.5;ENST00000549866.5;ENST00000552232.1	0.989	1.253	1.860	0.145(1392)	0.291(204)	0.597(10373)	non tumor-specific	nAS	yes
UN_MIR548AE1_UP_LS0013	chr2:184226181|184303363:+	MIR548AE1	microRNA 548ae-1	small non-coding RNA gene	no	.	3.900	0.448	0.000	0.004(39)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP005329.1_UP_LS0004	chr18:3319634|3330626:-	AP005329.1	-	lncRNA gene	no	.	1.989	0.243	0.000	0.024(229)	0.001(1)	0(0)	non tumor-specific	nAS	no
RABL2B_LS030	chr22:50782351|50783039:-	RABL2B	RAB, member of RAS oncogene family like 2B	protein coding gene	no	ENST00000395595.7	0.301	1.212	6.971	0.827(7928)	0.887(623)	0.963(16745)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RCN3_LS005	chr19:49534301|49537033:+	RCN3	reticulocalbin 3	protein coding gene	no	ENST00000597801.1	0.558	0.382	8.020	0.602(5768)	0.48(337)	0.938(16311)	non tumor-specific	alt_5prime;exon_skip	yes
UN_ATP1B1_LS0003	chr1:169106378|169106401:-	ATP1B1	ATPase Na+/K+ transporting subunit beta 1	protein coding gene	no	.	2.009	0.272	0.000	0.001(13)	0.004(3)	0(0)	non tumor-specific	nAS	no
GPAT4_LS023	chr8:41612273|41612845:+	GPAT4	glycerol-3-phosphate acyltransferase 4	protein coding gene	yes	ENST00000396987.7;ENST00000519921.5	92.388	47.781	63.032	0.996(9545)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
DAB2IP_LS015	chr9:121751982|121752898:+	DAB2IP	DAB2 interacting protein	protein coding gene	yes	ENST00000487716.1	0.173	0.017	0.649	0.002(15)	0.006(4)	0.056(965)	non tumor-specific	exon_skip	yes
UN_ERC1_LS0058	chr12:1482211|1490093:+	ERC1	ELKS/RAB6-interacting/CAST family member 1	protein coding gene	no	.	1.038	0.295	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
CUL3_LS015	chr2:224511582|224513524:-	CUL3	cullin 3	protein coding gene	no	ENST00000264414.8;ENST00000344951.8;ENST00000409096.5;ENST00000409777.5;ENST00000541548.5	54.470	44.754	34.818	0.973(9321)	0.993(697)	0.979(17011)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC097534.2_LS0006	chr4:173369610|173369914:-	AC097534.2	-	lncRNA gene	no	.	1.770	0.992	0.000	0.011(106)	0.023(16)	0(0)	non tumor-specific	nAS	no
AC012358.3_LS007	chr2:55314251|55317745:+	AC012358.3	-	lncRNA gene	no	ENST00000628537.2	0.023	0.028	0.623	0.001(6)	0.003(2)	0.001(10)	non tumor-specific	nAS	yes
UN_USP6NL_UP_LS0003	chr10:11636939|11668068:-	USP6NL	USP6 N-terminal like	protein coding gene	no	.	1.057	2.168	0.000	0.006(54)	0.016(11)	0(0)	non tumor-specific	nAS	no
ITGAL_LS012	chr16:30475580|30479091:+	ITGAL	integrin subunit alpha L	protein coding gene	no	ENST00000356798.10;ENST00000565864.5;ENST00000562857.5;ENST00000569725.1	5.742	2.770	2.010	0.645(6177)	0.793(557)	0.64(11121)	non tumor-specific	exon_skip	yes
UN_RPL37A_LS0011	chr2:216499388|216499951:-	RPL37A	ribosomal protein L37a	protein coding gene	no	.	24.249	1.784	0.000	0.003(26)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_MESD_LS0023	chr15:80982182|80989174:-	MESD	mesoderm development LRP chaperone	protein coding gene	no	.	2.713	0.458	0.000	0.002(22)	0.004(3)	0(0)	non tumor-specific	nAS	no
BCAS3_LS053	chr17:61245371|61368327:+	BCAS3	BCAS3 microtubule associated cell migration factor	protein coding gene	no	.;.	15.505	0.290	0.000	0.032(306)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
SEC31A_LS020	chr4:82842341|82844411:-	SEC31A	SEC31 homolog A, COPII coat complex component	protein coding gene	no	.;.;.	48.653	0.229	0.000	0(3)	0.001(1)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_MARCKS_LS0021	chr6:113857847|113859686:+	MARCKS	myristoylated alanine rich protein kinase C substrate	protein coding gene	yes	.	25.888	4.006	0.000	0.006(57)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_SPRR2G_LS0005	chr1:153149983|153150014:+	SPRR2G	small proline rich protein 2G	protein coding gene	no	.	41.438	56.279	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
LINC01980_LS001	chr3:27802850|27824650:+	LINC01980	long intergenic non-protein coding RNA 1980	lncRNA gene	no	ENST00000647336.1;ENST00000425195.6	0.088	0.000	0.825	0.002(21)	0(0)	0.003(55)	non tumor-specific	nAS	yes
UN_AC092809.3_UP_LS0002	chr1:224192793|224216891:-	AC092809.3	-	pseudogene	no	.	1.342	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_INPP4B_LS0095	chr4:142474452|142474827:-	INPP4B	inositol polyphosphate-4-phosphatase type II B	protein coding gene	yes	.	1.028	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SPINK5_LS018	chr5:148089272|148089494:+	SPINK5	serine peptidase inhibitor Kazal type 5	protein coding gene	no	ENST00000476697.7	0.374	0.221	4.540	0.006(56)	0.007(5)	0.125(2165)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
RABEP2_LS012	chr16:28911179|28914236:-	RABEP2	rabaptin, RAB GTPase binding effector protein 2	protein coding gene	no	ENST00000358201.8;ENST00000544477.5;ENST00000562590.5	42.849	22.194	24.246	0.993(9515)	0.997(700)	0.979(17014)	non tumor-specific	exon_skip	yes
UN_AC127455.1_UP_LS0001	chr16:88078099|88087011:-	AC127455.1	-	pseudogene	no	.	0.954	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
DSG2_LS008	chr18:31524888|31530987:+	DSG2	desmoglein 2	protein coding gene	no	ENST00000261590.12	76.980	58.108	4.759	0.808(7738)	0.953(669)	0.657(11416)	non tumor-specific	nAS	yes
UN_AC105285.1_LS0012	chr4:173166299|173167962:-	AC105285.1	-	lncRNA gene	no	.	3.056	0.000	0.000	0.003(28)	0(0)	0(0)	non tumor-specific	nAS	no
UN_HLA-B_LS0185	chr6:31271262|31271314:+	HLA-B	major histocompatibility complex, class I, B	protein coding gene	no	.	47.533	8.251	0.000	0.006(55)	0.001(1)	0(0)	non tumor-specific	nAS	no
USP3_LS013	chr15:63533918|63537025:+	USP3	ubiquitin specific peptidase 3	protein coding gene	no	ENST00000557884.5;ENST00000559192.5	0.100	0.275	2.379	0.686(6575)	0.783(550)	0.858(14908)	non tumor-specific	exon_skip	yes
CTU2_LS004	chr16:88707210|88709938:+	CTU2	cytosolic thiouridylase subunit 2	protein coding gene	no	ENST00000453996.6;ENST00000312060.9;ENST00000567949.5;ENST00000565071.1;ENST00000564921.1;ENST00000453996.6;ENST00000312060.9;ENST00000567949.5;ENST00000565071.1;ENST00000564921.1	9.148	4.153	10.897	0.988(9466)	0.997(700)	0.976(16973)	non tumor-specific	alt_3prime;exon_skip	yes
OTOF_LS042	chr2:26489295|26489678:-	OTOF	otoferlin	protein coding gene	no	ENST00000272371.6;ENST00000403946.7	4.375	0.704	1.804	0.003(30)	0.006(4)	0.103(1782)	non tumor-specific	nAS	yes
UN_RPS9_LS0031	chr19:54206462|54206549:-	RPS9	ribosomal protein S9	protein coding gene	no	.	2.729	0.000	0.000	0.003(25)	0(0)	0(0)	non tumor-specific	nAS	no
UN_IGHVIII-22-2_UP_LS0013	chr14:106269124|106463513:-	IGHVIII-22-2	immunoglobulin heavy variable (III)-22-2 (pseudogene)	no	no	.	97.325	59.778	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
PKN3_LS003	chr9:128705879|128706713:+	PKN3	protein kinase N3	protein coding gene	no	ENST00000291906.4	5.349	2.770	7.485	0.86(8244)	0.873(613)	0.946(16449)	non tumor-specific	nAS	yes
UN_AC099560.1_LS0006	chr3:40829011|40862392:+	AC099560.1	-	lncRNA gene	no	.	2.359	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
RBM10_LS014	chrX:47179495|47179880:+	RBM10	RNA binding motif protein 10	protein coding gene	no	ENST00000377604.7;ENST00000628161.2;ENST00000345781.10;ENST00000329236.8	63.831	32.514	37.023	0.99(9483)	0.996(699)	0.979(17020)	non tumor-specific	exon_skip	yes
MYO1C_LS031	chr17:1482558|1482861:-	MYO1C	myosin IE	protein coding gene	no	ENST00000648446.1;ENST00000438665.6;ENST00000575158.5;ENST00000648651.1;ENST00000359786.10;ENST00000361007.7;ENST00000646049.1;ENST00000570984.7;ENST00000545534.6;ENST00000573853.5;ENST00000570490.5	75.786	73.740	73.018	0.972(9310)	0.991(696)	0.976(16961)	non tumor-specific	nAS	yes
UN_LINC02008_LS0004	chr3:82032112|82042725:+	LINC02008	long intergenic non-protein coding RNA 2008	lncRNA gene	no	.	1.842	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
C1S_LS030	chr12:7067771|7067789:+	C1S	complement C1s	protein coding gene	no	ENST00000617865.4	43.716	0.000	0.930	0(1)	0(0)	0.386(6715)	non tumor-specific	nAS	yes
HBS1L_LS004	chr6:134978787|134979178:-	HBS1L	HBS1 like translational GTPase	protein coding gene	no	ENST00000367837.9;ENST00000527005.5;ENST00000527578.5;ENST00000415177.6;ENST00000367826.6;ENST00000533274.5;ENST00000526100.5	45.305	27.732	41.000	0.993(9518)	0.997(700)	0.979(17017)	non tumor-specific	alt_3prime	yes
SETD7_LS017	chr4:139604810|139606360:-	SETD7	SET domain containing 7, histone lysine methyltransferase	protein coding gene	no	ENST00000608958.1	1.471	0.505	0.975	0.079(761)	0.064(45)	0.226(3925)	non tumor-specific	exon_skip	yes
NBPF19_LS077	chr1:149543585|149544300:+	NBPF19	NBPF member 19	protein coding gene	no	ENST00000621744.4	0.625	0.488	0.367	0.356(3413)	0.409(287)	0(1)	non tumor-specific	nAS	yes
UN_EFNA1_LS0006	chr1:155128507|155131339:+	EFNA1	ephrin A1	protein coding gene	no	.	8.573	0.760	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_EP300_LS0018	chr22:41158500|41160612:+	EP300	E1A binding protein p300	protein coding gene	no	.	2.246	0.656	0.000	0.009(85)	0.001(1)	0(0)	non tumor-specific	nAS	no
MGAM_LS063	chr7:142085961|142086218:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000475668.6	8.194	8.720	1.371	0.095(910)	0.246(173)	0.396(6879)	non tumor-specific	nAS	yes
UN_KCNJ2_UP_LS0001	chr17:70163799|70164133:+	KCNJ2	potassium inwardly rectifying channel subfamily J member 2	protein coding gene	no	.	2.577	0.211	0.000	0.015(139)	0.009(6)	0(0)	non tumor-specific	nAS	no
CPSF3_LS008	chr2:9433960|9436211:+	CPSF3	cleavage and polyadenylation specific factor 3	protein coding gene	no	ENST00000238112.7;ENST00000460593.1	66.900	27.625	18.873	0.989(9476)	0.996(699)	0.978(17004)	non tumor-specific	exon_skip	yes
UN_ATP1A1_LS0038	chr1:116388772|116388898:-	ATP1A1	ATPase Na+/K+ transporting subunit alpha 1	protein coding gene	no	.	0.648	0.378	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_TUBB6_LS0059	chr18:12325575|12325695:-	TUBB6	tubulin beta 6 class V	protein coding gene	no	.	4.822	4.778	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	nAS	no
AWAT2_LS007	chrX:70043996|70044352:-	AWAT2	acyl-CoA wax alcohol acyltransferase 2	protein coding gene	no	ENST00000276101.7	0.258	15.420	1.737	0.003(26)	0.03(21)	0.064(1119)	non tumor-specific	exon_skip	yes
MEGF6_LS046	chr1:3506236|3507795:-	MEGF6	multiple EGF like domains 6	protein coding gene	no	ENST00000294599.8;ENST00000356575.8;ENST00000485002.6;ENST00000294599.8;ENST00000356575.8;ENST00000485002.6;ENST00000294599.8;ENST00000356575.8;ENST00000485002.6	12.962	7.901	13.467	0.656(6284)	0.791(555)	0.942(16377)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_LINC01588_LS0002	chr14:49942595|49943752:-	LINC01588	long intergenic non-protein coding RNA 1588	lncRNA gene	no	.	5.583	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CTSO_UP_LS0015	chr4:156112753|156129951:-	CTSO	cathepsin O	protein coding gene	no	.	3.593	0.000	0.000	0.002(21)	0(0)	0(0)	non tumor-specific	nAS	no
PTPN20_LS026	chr10:46965137|46999912:+	PTPN20	protein tyrosine phosphatase non-receptor type 20	protein coding gene	no	ENST00000502705.5	0.597	0.124	0.982	0.041(391)	0.047(33)	0.326(5659)	non tumor-specific	nAS	yes
UN_AC026254.2_LS0012	chr17:27347062|27348286:+	AC026254.2	-	lncRNA gene	no	.	2.459	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
APOBEC3B_LS001	chr22:38982470|38984075:+	APOBEC3B	apolipoprotein B mRNA editing enzyme catalytic subunit 3B	protein coding gene	no	ENST00000407298.7;ENST00000402182.7;ENST00000335760.9;ENST00000333467.3	13.843	4.525	1.220	0.851(8157)	0.838(588)	0.378(6562)	non tumor-specific	exon_skip	yes
UN_NADSYN1_LS0095	chr11:71521692|71523057:+	NADSYN1	NAD synthetase 1	protein coding gene	no	.	7.230	0.713	0.000	0.021(197)	0.011(8)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_AP1S2_LS0015	chrX:15852524|15852850:-	AP1S2	adaptor related protein complex 1 subunit sigma 2	protein coding gene	no	.	1.776	0.050	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
TFF2_LS005	chr21:42347632|42349881:-	TFF2	trefoil factor 2	protein coding gene	no	ENST00000291526.4;ENST00000463771.5;ENST00000475297.1	64.314	272.909	1.437	0.251(2407)	0.37(260)	0.362(6296)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
TRDMT1_LS025	chr10:17174660|17201571:-	TRDMT1	tRNA aspartic acid methyltransferase 1	protein coding gene	no	ENST00000354631.7;ENST00000377799.7;ENST00000495022.5;ENST00000488990.5;ENST00000525762.5;ENST00000424636.2;ENST00000479046.1	2.244	1.603	2.023	0.688(6587)	0.798(560)	0.837(14552)	non tumor-specific	nAS	yes
UN_CDK9_UP_LS0002	chr9:127776676|127784759:+	CDK9	cyclin dependent kinase 9	protein coding gene	no	.	3.062	0.386	0.000	0.012(114)	0.003(2)	0(0)	non tumor-specific	nAS	no
LHX4_LS006	chr1:180272006|180274185:+	LHX4	LIM homeobox 4	protein coding gene	yes	ENST00000263726.3	4.481	0.602	0.890	0.024(228)	0.047(33)	0.102(1776)	non tumor-specific	intron_retention	yes
MGAM_LS053	chr7:142074173|142076203:+	MGAM	maltase-glucoamylase	protein coding gene	no	ENST00000475668.6	6.500	4.633	1.257	0.086(827)	0.228(160)	0.271(4709)	non tumor-specific	nAS	yes
SLC9A3_LS013	chr5:481635|482068:-	SLC9A3	solute carrier family 9 member A3	protein coding gene	no	ENST00000644203.1;ENST00000264938.7;ENST00000514375.1;ENST00000507407.1	9.066	64.196	1.843	0.25(2398)	0.355(249)	0.362(6292)	non tumor-specific	nAS	yes
SOS2_LS001	chr14:50118853|50120275:-	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein coding gene	no	ENST00000216373.9;ENST00000543680.5	27.302	20.814	29.199	0.968(9270)	0.977(686)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SNCAIP_LS0081	chr5:122451601|122456482:+	SNCAIP	synuclein alpha interacting protein	protein coding gene	no	.	1.319	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip	no
UN_RBM39_LS0015	chr20:35720602|35721740:-	RBM39	RNA binding motif protein 39	protein coding gene	no	.	0.575	0.249	0.000	0.006(62)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
CHCHD6_LS021	chr3:126914750|126957425:+	CHCHD6	coiled-coil-helix-coiled-coil-helix domain containing 6	protein coding gene	no	ENST00000513253.1;ENST00000513253.1	22.675	14.219	0.826	0.861(8246)	0.885(621)	0.352(6112)	non tumor-specific	alt_3prime;exon_skip	yes
UN_NCKAP5_LS0035	chr2:133213779|133252830:-	NCKAP5	NCK associated protein 5	protein coding gene	no	.	0.986	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MRPL36_LS0004	chr5:1798947|1801238:-	MRPL36	mitochondrial ribosomal protein L36	protein coding gene	no	.	5.474	1.072	0.000	0.044(425)	0.057(40)	0(0)	non tumor-specific	alt_5prime	no
UN_ZNF720_LS0011	chr16:31714258|31714367:+	ZNF720	zinc finger protein 720	protein coding gene	no	.	2.615	0.076	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	intron_retention	no
GPS1_LS013	chr17:82051964|82052375:+	GPS1	G protein pathway suppressor 1	protein coding gene	no	ENST00000320548.8;ENST00000584229.1;ENST00000320548.8;ENST00000584229.1	0.306	0.391	2.713	0.373(3577)	0.283(199)	0.92(15989)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PLLP_LS0023	chr16:57255085|57255617:-	PLLP	plasmolipin	protein coding gene	no	.	17.241	4.436	0.000	0.01(93)	0.02(14)	0(0)	non tumor-specific	nAS	no
VPS35P1_LS007	chr16:35097510|35101585:+	VPS35P1	VPS35 pseudogene 1	pseudogene	no	ENST00000563400.1	0.375	0.055	0.602	0.001(6)	0.001(1)	0.009(165)	non tumor-specific	nAS	yes
UN_PDXDC1_LS0134	chr16:15114571|15125691:-	PDXDC1	pyridoxal dependent decarboxylase domain containing 1	protein coding gene	no	.	7.684	0.152	0.000	0.004(36)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_AC118549.1_LS0019	chr1:77584655|77641384:-	AC118549.1	-	protein coding gene	no	.	1.620	0.370	0.000	0.007(70)	0.023(16)	0(0)	non tumor-specific	exon_skip	no
CAPN15_LS025	chr16:549201|549288:+	CAPN15	calpain 15	protein coding gene	no	ENST00000219611.6	37.543	17.708	24.373	0.975(9344)	0.976(685)	0.979(17011)	non tumor-specific	alt_5prime	yes
CAND1_LS008	chr12:67297853|67298950:+	CAND1	cullin associated and neddylation dissociated 1	protein coding gene	no	ENST00000545606.5;ENST00000540319.5	36.276	23.794	22.666	0.958(9183)	0.986(692)	0.974(16938)	non tumor-specific	nAS	yes
UN_CRTC1_LS0047	chr19:18781185|18781218:-	CRTC1	CREB regulated transcription coactivator 1	protein coding gene	yes	.	3.056	0.463	0.000	0.001(11)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_ZNF512B_LS0158	chr20:63965673|63965855:-	ZNF512B	zinc finger protein 512B	protein coding gene	no	.	2.630	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
MTO1_LS011	chr6:73479844|73479936:+	MTO1	mitochondrial tRNA translation optimization 1	protein coding gene	no	ENST00000415954.6;ENST00000498286.5;ENST00000442897.6;ENST00000370305.5;ENST00000415228.5;ENST00000370300.8;ENST00000462039.5;ENST00000466977.1	12.197	9.345	22.444	0.982(9406)	0.996(699)	0.979(17013)	non tumor-specific	alt_3prime;intron_retention	yes
FCRL6_LS002	chr1:159800613|159802420:+	FCRL6	Fc receptor like 6	protein coding gene	no	ENST00000321935.10	0.417	0.063	0.796	0.01(97)	0.01(7)	0.027(468)	non tumor-specific	alt_3prime;exon_skip	yes
ENTPD5_LS012	chr14:73977374|73983018:-	ENTPD5	ectonucleoside triphosphate diphosphohydrolase 5 (inactive)	protein coding gene	yes	ENST00000557325.5;ENST00000334696.10;ENST00000553284.5	16.996	32.782	7.206	0.924(8854)	0.974(684)	0.967(16805)	non tumor-specific	exon_skip	yes
UN_AC010619.1_LS0024	chr19:49466290|49468381:+	AC010619.1	-	protein coding gene	no	.	2.890	0.625	0.000	0.011(108)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_ATPAF2_LS0016	chr17:18007460|18016064:+	ATPAF2	ATP synthase mitochondrial F1 complex assembly factor 2	protein coding gene	no	.	3.996	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ATXN2L_LS033	chr16:28835399|28835549:+	ATXN2L	ataxin 2 like	protein coding gene	no	ENST00000340394.12;ENST00000325215.10;ENST00000395547.6;ENST00000336783.8;ENST00000382686.8;ENST00000564304.5;ENST00000570200.5;ENST00000565971.5;ENST00000562583.5	105.542	42.766	108.452	0.994(9521)	0.996(699)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
FAM172A_LS001	chr5:93621129|93737812:-	FAM172A	family with sequence similarity 172 member A	protein coding gene	yes	ENST00000502503.1	0.018	0.000	0.661	0.003(24)	0.001(1)	0.029(511)	non tumor-specific	nAS	yes
TRIM49_LS008	chr11:89807284|89808437:-	TRIM49	tripartite motif containing 49	protein coding gene	no	ENST00000329758.5	0.693	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
UN_SSH3_LS0047	chr11:67311624|67311805:-	SSH3	slingshot protein phosphatase 3	protein coding gene	no	.	0.275	0.040	0.000	0.003(27)	0.001(1)	0(0)	non tumor-specific	nAS	no
CKAP5_LS006	chr11:46751534|46752635:-	CKAP5	cytoskeleton associated protein 5	protein coding gene	no	ENST00000529230.5;ENST00000312055.9;ENST00000354558.7;ENST00000533413.5	125.341	48.365	54.378	0.992(9509)	0.993(697)	0.979(17018)	non tumor-specific	exon_skip	yes
AC009292.1_LS001	chr15:67835781|67837090:-	AC009292.1	-	lncRNA gene	no	ENST00000502156.1	1.241	0.000	0.719	0.001(12)	0(0)	0.017(290)	non tumor-specific	nAS	yes
UN_MFSD12_LS0026	chr19:3539260|3539947:+	MFSD12	major facilitator superfamily domain containing 12	protein coding gene	no	.	0.395	0.215	0.000	0.037(350)	0.028(20)	0(0)	non tumor-specific	nAS	no
ACMSD_LS009	chr2:134859357|134863395:+	ACMSD	aminocarboxymuconate semialdehyde decarboxylase	protein coding gene	no	ENST00000392928.5	20.311	38.881	1.124	0.147(1412)	0.275(193)	0.049(854)	non tumor-specific	exon_skip	yes
TLN1_LS037	chr9:35712124|35712835:-	TLN1	talin 1	protein coding gene	no	ENST00000314888.9	119.787	98.743	81.093	0.969(9283)	0.99(695)	0.979(17020)	non tumor-specific	alt_3prime;exon_skip	yes
UN_EMP3_UP_LS0002	chr19:48237985|48281622:+	EMP3	epithelial membrane protein 3	protein coding gene	no	.	0.300	0.019	0.000	0.019(181)	0.006(4)	0(0)	non tumor-specific	nAS	no
NFYA_LS008	chr6:41079164|41084046:+	NFYA	nuclear transcription factor Y subunit alpha	protein coding gene	no	ENST00000353205.5;ENST00000353205.5	16.360	7.997	3.691	0.944(9049)	0.963(676)	0.78(13564)	non tumor-specific	alt_5prime;exon_skip	yes
RNF34_LS011	chr12:121409777|121416159:+	RNF34	ring finger protein 34	protein coding gene	no	ENST00000557402.1	0.045	0.013	0.564	0.654(6266)	0.655(460)	0.003(52)	non tumor-specific	nAS	yes
SNRNP70_LS004	chr19:49085636|49090291:+	SNRNP70	small nuclear ribonucleoprotein U1 subunit 70	protein coding gene	no	ENST00000598984.5	0.212	0.219	2.050	0.941(9018)	0.907(637)	0.784(13621)	non tumor-specific	exon_skip	yes
UN_PPP1R13L_LS0034	chr19:45393001|45395436:-	PPP1R13L	protein phosphatase 1 regulatory subunit 13 like	protein coding gene	yes	.	5.067	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ZNF28_LS0203	chr19:52840463|52840968:-	ZNF28	zinc finger protein 28	protein coding gene	no	.	2.228	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
UN_EXOC1_LS0016	chr4:55877757|55877917:+	EXOC1	exocyst complex component 1	protein coding gene	no	.	2.884	0.000	0.000	0.006(62)	0(0)	0(0)	non tumor-specific	intron_retention	no
MRPL23-AS1_LS003	chr11:1985641|1989826:-	MRPL23-AS1	MRPL23 antisense RNA 1	lncRNA gene	no	ENST00000419080.1	1.599	0.132	0.696	0.073(696)	0.03(21)	0.026(458)	non tumor-specific	nAS	yes
UN_CPQ_LS0017	chr8:96953610|96981845:-	CPQ	carboxypeptidase Q	protein coding gene	no	.	7.509	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SUN5_LS009	chr20:33000135|33001212:-	SUN5	Sad1 and UNC84 domain containing 5	protein coding gene	no	ENST00000375523.7;ENST00000356173.7;ENST00000420875.5	3.978	0.000	0.689	0(3)	0(0)	0.014(245)	non tumor-specific	exon_skip	yes
UN_PAIP2B_LS0005	chr2:71202600|71226963:-	PAIP2B	poly(A) binding protein interacting protein 2B	protein coding gene	no	.	4.243	2.891	0.000	0.093(893)	0.138(97)	0(0)	non tumor-specific	alt_5prime	no
SLC4A8_LS029	chr12:51469788|51470392:+	SLC4A8	solute carrier family 4 member 8	protein coding gene	no	ENST00000535225.6;ENST00000358657.7;ENST00000604314.5;ENST00000453097.6;ENST00000319957.10;ENST00000514353.7;ENST00000551071.5;ENST00000546663.1	5.870	2.841	1.883	0.276(2643)	0.328(230)	0.6(10432)	non tumor-specific	alt_3prime	yes
UN_IL36RN_LS0010	chr2:113060937|113062453:+	IL36RN	interleukin 36 receptor antagonist	protein coding gene	no	.	2.769	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
HOOK3_LS026	chr8:43013400|43018358:+	HOOK3	hook microtubule tethering protein 3	protein coding gene	no	ENST00000307602.8;ENST00000533539.1	6.912	4.665	8.255	0.922(8832)	0.972(682)	0.97(16859)	non tumor-specific	nAS	yes
DNAJB2_LS011	chr2:219281771|219281939:+	DNAJB2	DnaJ heat shock protein family (Hsp40) member B2	protein coding gene	no	ENST00000336576.9;ENST00000425450.5;ENST00000392086.8;ENST00000421532.5;ENST00000480537.5;ENST00000477917.5;ENST00000392087.6;ENST00000442681.5;ENST00000439026.1;ENST00000463463.5;ENST00000487855.1	100.683	75.945	108.166	0.997(9556)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_LIN37_LS0016	chr19:35754157|35754255:+	LIN37	lin-37 DREAM MuvB core complex component	protein coding gene	no	.	10.024	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
ANKRD17_LS009	chr4:73097272|73098073:-	ANKRD17	ankyrin repeat domain 17	protein coding gene	no	ENST00000358602.8;ENST00000558247.5;ENST00000509867.6;ENST00000330838.10	37.554	26.185	29.600	0.972(9316)	0.989(694)	0.977(16989)	non tumor-specific	exon_skip	yes
PREX2_LS010	chr8:68053246|68055830:+	PREX2	phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2	protein coding gene	no	ENST00000288368.4;ENST00000529398.5;ENST00000517617.1	4.648	2.820	2.675	0.297(2849)	0.571(401)	0.755(13121)	non tumor-specific	nAS	yes
CCDC88B_LS025	chr11:64351616|64352130:+	CCDC88B	coiled-coil domain containing 88B	protein coding gene	no	ENST00000463837.5;ENST00000356786.9;ENST00000494080.5;ENST00000359902.2	13.211	4.175	11.628	0.721(6909)	0.66(463)	0.947(16454)	non tumor-specific	nAS	yes
UN_KRT6B_UP_LS0015	chr12:52471284|52487608:-	KRT6B	keratin 6B	protein coding gene	no	.	3781.327	1902.754	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
HOXA11-AS_LS005	chr7:27186263|27186683:+	HOXA11-AS	HOXA11 antisense RNA	lncRNA gene	no	ENST00000520395.2;ENST00000650141.1	3.607	3.152	2.531	0.455(4360)	0.409(287)	0.373(6484)	non tumor-specific	nAS	yes
UN_POPDC2_LS0002	chr3:119642561|119643049:-	POPDC2	popeye domain containing 2	protein coding gene	no	.	3.209	0.576	0.000	0.022(209)	0.024(17)	0(0)	non tumor-specific	nAS	no
IFIH1_LS004	chr2:162272387|162273795:-	IFIH1	interferon induced with helicase C domain 1	protein coding gene	no	ENST00000649979.1;ENST00000263642.2;ENST00000649554.1;ENST00000648433.1	42.712	23.235	12.464	0.989(9479)	0.997(700)	0.972(16896)	non tumor-specific	nAS	yes
CES4A_LS019	chr16:67004224|67008974:+	CES4A	carboxylesterase 4A	protein coding gene	no	.;.	3.238	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
KLRF1_LS006	chr12:9833452|9841812:+	KLRF1	killer cell lectin like receptor F1	protein coding gene	no	ENST00000617889.4	1.863	2.442	1.440	0.265(2540)	0.597(419)	0.578(10053)	non tumor-specific	exon_skip	yes
RAB3GAP2_LS032	chr1:220210876|220210955:-	RAB3GAP2	RAB3 GTPase activating non-catalytic protein subunit 2	protein coding gene	no	ENST00000358951.6;ENST00000484658.1;ENST00000474178.1	14.461	10.000	6.272	0.842(8070)	0.929(652)	0.936(16275)	non tumor-specific	exon_skip	yes
UN_SLC39A14_LS0002	chr8:22367408|22379427:+	SLC39A14	solute carrier family 39 member 14	protein coding gene	no	.	0.666	0.532	0.000	0.017(159)	0.05(35)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
TNS2_LS001	chr12:53047063|53051855:+	TNS2	tensin 2	protein coding gene	no	ENST00000379902.7	0.282	0.069	1.835	0.071(684)	0.095(67)	0.732(12724)	non tumor-specific	nAS	yes
UN_FBXO8_LS0005	chr4:174263092|174283410:-	FBXO8	F-box protein 8	protein coding gene	no	.	4.386	1.159	0.000	0.006(61)	0.019(13)	0(0)	non tumor-specific	alt_3prime	no
POLR2J4_LS017	chr7:44014783|44016434:-	POLR2J4	RNA polymerase II subunit J4, pseudogene	pseudogene	no	ENST00000326391.6;ENST00000418424.2	56.483	28.778	17.818	0.996(9542)	0.997(700)	0.979(17018)	non tumor-specific	nAS	yes
FAM156A_LS037	chrX:52956755|52995306:-	FAM156A	family with sequence similarity 156 member A	protein coding gene	no	ENST00000615092.4	0.032	0.033	0.694	0.144(1382)	0.134(94)	0.143(2484)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
LHCGR_LS011	chr2:48723696|48725676:-	LHCGR	luteinizing hormone/choriogonadotropin receptor	protein coding gene	no	ENST00000294954.11;ENST00000405626.5;ENST00000403273.5;ENST00000401907.5;ENST00000428232.2	3.234	0.668	1.357	0.023(216)	0.081(57)	0.255(4435)	non tumor-specific	nAS	yes
OBSCN_LS131	chr1:228366186|228366400:+	OBSCN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein coding gene	no	ENST00000422127.5;ENST00000570156.6;ENST00000366707.9;ENST00000636875.1;ENST00000636476.1	3.705	1.746	6.043	0.203(1943)	0.368(258)	0.865(15033)	non tumor-specific	nAS	yes
TSC1_LS024	chr9:132912457|132921819:-	TSC1	TSC complex subunit 1	protein coding gene	yes	ENST00000647279.1	1.674	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	exon_skip	yes
TDGF1_LS003	chr3:46579147|46579232:+	TDGF1	teratocarcinoma-derived growth factor 1	protein coding gene	yes	ENST00000542931.6;ENST00000296145.5;ENST00000493282.5;ENST00000471721.1	4.623	4.228	1.256	0.155(1488)	0.323(227)	0.253(4401)	non tumor-specific	exon_skip;intron_retention	yes
UN_SOD2_LS0023	chr6:159679735|159679761:-	SOD2	superoxide dismutase 2	protein coding gene	yes	.	191.464	9.622	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
FRAS1_LS049	chr4:78448316|78450151:+	FRAS1	Fraser extracellular matrix complex subunit 1	protein coding gene	no	ENST00000512123.3;ENST00000509802.1	1.906	2.971	1.612	0.599(5742)	0.744(522)	0.567(9861)	non tumor-specific	nAS	yes
UN_MAF_LS0004	chr16:79594553|79596071:-	MAF	MAF bZIP transcription factor	protein coding gene	yes	.	10.040	7.543	0.000	0.006(62)	0.019(13)	0(0)	non tumor-specific	alt_5prime;intron_retention	no
STAU1_LS023	chr20:49159146|49174195:-	STAU1	staufen double-stranded RNA binding protein 1	protein coding gene	no	ENST00000456866.2	0.313	0.080	1.320	0.537(5141)	0.594(417)	0.658(11438)	non tumor-specific	exon_skip;mutex_exons	yes
UN_SMCHD1_LS0002	chr18:2656261|2666870:+	SMCHD1	structural maintenance of chromosomes flexible hinge domain containing 1	protein coding gene	yes	.	2.372	0.173	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
CRYM_LS004	chr16:21258845|21261254:-	CRYM	crystallin mu	protein coding gene	no	ENST00000570401.5;ENST00000543948.5;ENST00000219599.7	21.305	47.591	6.052	0.601(5754)	0.799(561)	0.846(14706)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SFTPB_LS0137	chr2:85668251|85668354:-	SFTPB	surfactant protein B	protein coding gene	no	.	5.201	2.579	0.000	0.011(104)	0.056(39)	0(0)	non tumor-specific	alt_5prime	no
UN_TFEC_LS0049	chr7:116141727|116144534:+	TFEC	transcription factor EC	protein coding gene	no	.	4.405	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_ITGA6_LS0025	chr2:172469308|172470974:+	ITGA6	integrin subunit alpha 6	protein coding gene	no	.	4.216	0.000	0.000	0.003(27)	0(0)	0(0)	non tumor-specific	alt_5prime	no
LDAH_LS019	chr2:20790398|20823037:-	LDAH	lipid droplet associated hydrolase	protein coding gene	no	ENST00000541941.5;ENST00000403006.6	0.144	0.099	0.950	0.34(3255)	0.387(272)	0.474(8242)	non tumor-specific	exon_skip	yes
TBC1D3F_LS009	chr17:36434895|36435225:-	TBC1D3F	TBC1 domain family member 3F	protein coding gene	no	ENST00000620210.1	0.699	0.265	3.574	0.211(2020)	0.111(78)	0.164(2856)	non tumor-specific	nAS	yes
UN_EPOR_LS0016	chr19:11383006|11383097:-	EPOR	erythropoietin receptor	protein coding gene	no	.	2.339	0.269	0.000	0.005(49)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
SCLY_LS014	chr2:238082209|238082723:+	SCLY	selenocysteine lyase	protein coding gene	no	ENST00000482031.5	0.159	0.050	0.673	0.149(1427)	0.098(69)	0.074(1292)	non tumor-specific	alt_3prime	yes
USP30_LS019	chr12:109082743|109082843:+	USP30	ubiquitin specific peptidase 30	protein coding gene	no	ENST00000392784.6;ENST00000257548.9;ENST00000377883.7;ENST00000479219.5	19.789	14.828	10.885	0.979(9383)	0.991(696)	0.976(16967)	non tumor-specific	alt_3prime;exon_skip	yes
BSCL2_LS032	chr11:62707324|62709264:-	BSCL2	BSCL2 lipid droplet biogenesis associated, seipin	protein coding gene	no	ENST00000524862.5	0.016	0.119	0.678	0.577(5527)	0.684(480)	0.168(2922)	non tumor-specific	alt_5prime	yes
CPNE5_LS034	chr6:36822160|36823058:-	CPNE5	copine 5	protein coding gene	no	ENST00000244751.6;ENST00000633136.1;ENST00000633280.1	6.358	9.323	3.214	0.361(3459)	0.285(200)	0.784(13620)	non tumor-specific	exon_skip	yes
UN_AHNAK_LS0434	chr11:62520532|62520554:+	AHNAK	AHNAK nucleoprotein	protein coding gene	yes	.	2.255	1.902	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
AL136528.2_LS001	chr1:3712438|3714187:-	AL136528.2	-	lncRNA gene	no	ENST00000416554.1	0.331	0.062	0.963	0.009(87)	0.007(5)	0.023(402)	non tumor-specific	nAS	yes
UN_TPD52L2_LS0085	chr20:63890902|63890938:-	TPD52L2	TPD52 like 2	protein coding gene	no	.	3.336	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MKI67_LS0139	chr10:128104894|128107805:+	MKI67	marker of proliferation Ki-67	protein coding gene	no	.	3.920	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SPTLC3_UP_LS0007	chr20:12967210|12979352:+	SPTLC3	serine palmitoyltransferase long chain base subunit 3	protein coding gene	no	.	1.970	0.985	0.000	0.004(34)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_MBTPS1_LS0039	chr16:84102107|84116037:-	MBTPS1	membrane bound transcription factor peptidase, site 1	protein coding gene	no	.	3.752	0.179	0.000	0.002(17)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
GFAP_LS034	chr17:44913823|44915026:-	GFAP	glial fibrillary acidic protein	protein coding gene	no	ENST00000376990.8;ENST00000376990.8	0.127	0.012	2.195	0.08(764)	0.019(13)	0.111(1921)	non tumor-specific	alt_5prime;exon_skip	yes
STK10_LS006	chr5:172055776|172057349:-	STK10	serine/threonine kinase 10	protein coding gene	yes	ENST00000176763.9;ENST00000520476.1;ENST00000523615.1	36.985	16.117	18.483	0.985(9434)	0.993(697)	0.978(16997)	non tumor-specific	exon_skip	yes
RECK_LS009	chr9:36065624|36080605:+	RECK	reversion inducing cysteine rich protein with kazal motifs	protein coding gene	yes	ENST00000377966.3;ENST00000479053.1	8.007	6.908	7.869	0.805(7713)	0.929(652)	0.924(16065)	non tumor-specific	exon_skip	yes
UN_PTPRO_LS0059	chr12:15579385|15580039:+	PTPRO	protein tyrosine phosphatase receptor type U	protein coding gene	no	.	5.828	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
PPP1R10_LS008	chr6:30604511|30604588:-	PPP1R10	protein phosphatase 1 regulatory subunit 10	protein coding gene	yes	ENST00000376511.6	41.199	30.430	33.797	0.951(9107)	0.984(691)	0.979(17015)	non tumor-specific	nAS	yes
SS18_LS008	chr18:26035127|26038555:-	SS18	SS18 subunit of BAF chromatin remodeling complex	protein coding gene	yes	ENST00000579640.5;ENST00000269137.11;ENST00000585121.5;ENST00000579640.5;ENST00000269137.11;ENST00000585121.5;ENST00000579640.5;ENST00000269137.11;ENST00000585121.5	50.981	39.541	26.265	0.986(9446)	0.996(699)	0.964(16748)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_PPP2R5C_LS0042	chr14:101824190|101831701:+	PPP2R5C	protein phosphatase 2 regulatory subunit B'gamma	protein coding gene	yes	.	2.422	0.000	0.000	0.001(14)	0.004(3)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
PTCD2_LS015	chr5:72335096|72335794:+	PTCD2	pentatricopeptide repeat domain 2	protein coding gene	no	ENST00000380639.9;ENST00000511752.5;ENST00000486995.5;ENST00000308077.9;ENST00000510676.6;ENST00000493283.5	7.159	4.607	4.656	0.882(8448)	0.933(655)	0.935(16253)	non tumor-specific	alt_3prime;exon_skip	yes
ARMC2_LS019	chr6:108962127|108964180:+	ARMC2	armadillo repeat containing 2	protein coding gene	no	ENST00000368972.7;ENST00000392644.8;ENST00000481850.1	3.559	2.266	4.472	0.237(2269)	0.386(271)	0.915(15899)	non tumor-specific	alt_3prime	yes
TTC27_LS014	chr2:32733923|32736694:+	TTC27	tetratricopeptide repeat domain 27	protein coding gene	no	ENST00000317907.8;ENST00000647819.1	25.737	13.749	13.261	0.986(9443)	0.997(700)	0.973(16907)	non tumor-specific	exon_skip	yes
UN_HLA-DRA_LS0067	chr6:32443921|32444669:+	HLA-DRA	major histocompatibility complex, class II, DR alpha	protein coding gene	no	.	834.995	87.100	0.000	0.016(157)	0.017(12)	0(0)	non tumor-specific	alt_3prime	no
TBC1D24_LS002	chr16:2475170|2496034:+	TBC1D24	TBC1 domain family member 24	protein coding gene	no	ENST00000567020.6;ENST00000569874.2;ENST00000646147.1;ENST00000293970.9	4.045	3.183	2.259	0.808(7737)	0.849(596)	0.845(14694)	non tumor-specific	nAS	yes
SUN1_LS047	chr7:853618|856358:+	SUN1	Sad1 and UNC84 domain containing 1	protein coding gene	no	ENST00000457861.1	0.118	0.102	0.702	0.07(667)	0.067(47)	0.165(2867)	non tumor-specific	exon_skip	yes
ZNF670_LS004	chr1:247039537|247078594:-	ZNF670	zinc finger protein 670	protein coding gene	no	ENST00000366503.2	4.407	2.316	1.931	0.74(7091)	0.849(596)	0.794(13808)	non tumor-specific	alt_5prime	yes
TMEM199_LS010	chr17:28359404|28360529:+	TMEM199	transmembrane protein 199	protein coding gene	no	ENST00000292114.7;ENST00000580868.5;ENST00000483505.6;ENST00000395404.7;ENST00000509083.2	39.338	23.131	34.814	0.996(9547)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
NFS1_LS017	chr20:35692296|35696377:-	NFS1	NFS1 cysteine desulfurase	protein coding gene	no	ENST00000421540.1	0.044	0.022	0.712	0.359(3442)	0.395(277)	0.234(4073)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
UN_WWOX_LS0101	chr16:78984807|78996202:+	WWOX	WW domain containing oxidoreductase	protein coding gene	yes	.	1.934	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	exon_skip	no
MAP3K3_LS022	chr17:63689735|63690264:+	MAP3K3	mitogen-activated protein kinase kinase kinase 3	protein coding gene	no	ENST00000579585.5;ENST00000584573.5;ENST00000361733.7;ENST00000361357.7;ENST00000577395.5;ENST00000577597.5	20.990	18.367	28.520	0.966(9257)	0.989(694)	0.979(17012)	non tumor-specific	alt_5prime	yes
RPA1_LS011	chr17:1872211|1872434:+	RPA1	replication protein A1	protein coding gene	yes	ENST00000573924.1	0.014	0.011	0.605	0.671(6425)	0.667(468)	0.029(511)	non tumor-specific	nAS	yes
PER2_LS022	chr2:238268974|238271312:-	PER2	period circadian regulator 2	protein coding gene	yes	ENST00000254657.7;ENST00000355768.6	9.282	9.707	5.866	0.827(7922)	0.959(673)	0.932(16201)	non tumor-specific	exon_skip	yes
EPB42_LS003	chr15:43203275|43206330:-	EPB42	erythrocyte membrane protein band 4.2	protein coding gene	no	ENST00000648595.1;ENST00000568508.6;ENST00000540029.5;ENST00000441366.6;ENST00000622454.4;ENST00000567019.2	4.173	1.024	1.884	0.023(225)	0.071(50)	0.289(5020)	non tumor-specific	exon_skip	yes
PLEKHA4_LS010	chr19:48852326|48853682:-	PLEKHA4	pleckstrin homology domain containing A4	protein coding gene	no	ENST00000355496.9;ENST00000263265.10;ENST00000595867.1;ENST00000594195.1	14.042	8.984	27.436	0.951(9111)	0.994(698)	0.966(16785)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	yes
SPON1_LS001	chr11:13963142|13982847:+	SPON1	spondin 1	protein coding gene	no	ENST00000576479.3	12.433	7.369	7.526	0.622(5956)	0.839(589)	0.849(14757)	non tumor-specific	nAS	yes
UN_SORBS2_LS0056	chr4:185666206|185676997:-	SORBS2	sorbin and SH3 domain containing 2	protein coding gene	no	.	1.348	0.187	0.000	0.003(33)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
TLR3_LS008	chr4:186084172|186084645:+	TLR3	toll like receptor 3	protein coding gene	no	ENST00000296795.7;ENST00000512264.1;ENST00000504367.1	6.682	7.348	5.006	0.905(8667)	0.949(666)	0.884(15358)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_PDLIM7_LS0019	chr5:177484187|177488068:-	PDLIM7	PDZ and LIM domain 7	protein coding gene	no	.	16.823	1.705	0.000	0.003(30)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_FAM111A_LS0038	chr11:59145419|59145827:+	FAM111A	family with sequence similarity 111 member A	protein coding gene	no	.	1.134	0.172	0.000	0.084(804)	0.01(7)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
UN_AC092170.1_UP_LS0024	chr2:117413865|117413888:-	AC092170.1	-	pseudogene	no	.	6.722	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
HEATR1_LS026	chr1:236576949|236581222:-	HEATR1	HEAT repeat containing 1	protein coding gene	no	ENST00000366582.7;ENST00000366581.6	14.318	5.238	8.210	0.853(8177)	0.902(633)	0.944(16414)	non tumor-specific	nAS	yes
UN_CRTAP_LS0030	chr3:33116440|33142737:-	CRTAP	cartilage associated protein	protein coding gene	no	.	7.021	1.505	0.000	0.003(32)	0.007(5)	0(0)	non tumor-specific	nAS	no
LPAR6_LS001	chr13:48389812|48391400:-	LPAR6	lysophosphatidic acid receptor 6	protein coding gene	no	ENST00000464486.5	0.816	0.496	0.940	0.435(4166)	0.533(374)	0.436(7574)	non tumor-specific	exon_skip;intron_retention	yes
UN_SERPINA1_LS0015	chr14:94378584|94382929:+	SERPINA1	serpin family A member 1	protein coding gene	no	.	6.298	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CA5B_LS0006	chrX:15693058|15721497:+	CA5B	carbonic anhydrase 5B	protein coding gene	no	.	2.806	1.502	0.000	0.268(2572)	0.415(291)	0(0)	non tumor-specific	exon_skip	no
RNF123_LS057	chr3:49721105|49721185:+	RNF123	ring finger protein 123	protein coding gene	no	ENST00000327697.10;ENST00000457726.5;ENST00000486102.5;ENST00000487805.6;ENST00000433785.1;ENST00000498376.1	39.172	24.592	61.499	0.971(9301)	0.983(690)	0.979(17021)	non tumor-specific	alt_3prime;intron_retention	yes
TRAF2_LS008	chr9:136889736|136890349:+	TRAF2	TNF receptor associated factor 2	protein coding gene	no	ENST00000414589.1	0.354	0.338	1.716	0.274(2622)	0.325(228)	0.607(10544)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SPATA3_LS012	chr2:231012697|231013874:+	SPATA3	spermatogenesis associated 3	protein coding gene	no	ENST00000452881.5	87.881	0.000	0.813	0(1)	0(0)	0.003(49)	non tumor-specific	nAS	yes
IFT46_LS006	chr11:118552335|118554459:-	IFT46	intraflagellar transport 46	protein coding gene	no	ENST00000264021.7;ENST00000264020.6;ENST00000530872.5;ENST00000531201.5;ENST00000525060.1;ENST00000531939.5;ENST00000534156.5	52.591	38.808	40.378	0.994(9528)	0.997(700)	0.978(17007)	non tumor-specific	alt_5prime;exon_skip	yes
UN_NCKIPSD_LS0027	chr3:48680229|48682045:-	NCKIPSD	NCK interacting protein with SH3 domain	protein coding gene	no	.	1.333	0.126	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
XRRA1_LS030	chr11:74910012|74921214:-	XRRA1	X-ray radiation resistance associated 1	protein coding gene	no	ENST00000526047.1;ENST00000533598.5	0.313	0.180	0.761	0.338(3234)	0.301(211)	0.276(4802)	non tumor-specific	exon_skip	yes
UN_SSX2IP_LS0011	chr1:84656002|84656348:-	SSX2IP	SSX family member 2 interacting protein	protein coding gene	no	.	7.427	4.756	0.000	0.602(5764)	0.538(378)	0(0)	non tumor-specific	alt_3prime	no
XIST_LS010	chrX:73829231|73830623:-	XIST	X inactive specific transcript	lncRNA gene	yes	ENST00000648829.1;ENST00000648091.1;ENST00000648927.1	2.308	0.278	0.000	0.007(67)	0.003(2)	0(0)	non tumor-specific	nAS	yes
ZNF569_LS018	chr19:37465473|37468981:-	ZNF569	zinc finger protein 569	protein coding gene	no	ENST00000591073.1	0.225	0.063	0.672	0.006(56)	0.013(9)	0.031(536)	non tumor-specific	exon_skip	yes
UN_NEK3_UP_LS0001	chr13:52161278|52167129:-	NEK3	NIMA related kinase 3	protein coding gene	no	.	1.536	0.000	0.000	0.002(18)	0(0)	0(0)	non tumor-specific	nAS	no
TNXB_LS020	chr6:32052993|32053388:-	TNXB	tenascin XB	protein coding gene	no	ENST00000644971.2;ENST00000647633.1;ENST00000375244.7;ENST00000611016.2	7.014	22.662	27.563	0.567(5436)	0.964(677)	0.946(16438)	non tumor-specific	alt_3prime;exon_skip	yes
UN_SIPA1_LS0054	chr11:65650479|65650572:+	SIPA1	signal-induced proliferation-associated 1	protein coding gene	no	.	15.840	2.980	0.000	0.009(86)	0.011(8)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
MRVI1-AS1_LS003	chr11:10586126|10589012:+	MRVI1-AS1	IRAG1 antisense RNA 1	lncRNA gene	no	ENST00000529979.5	0.810	0.000	0.763	0(4)	0(0)	0.03(513)	non tumor-specific	nAS	yes
UN_CASR_LS0011	chr3:122201639|122201686:-	CASR	calcium sensing receptor	protein coding gene	no	.	7.351	0.000	0.000	0.002(23)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TUSC3_LS0059	chr8:15748465|15751997:+	TUSC3	tumor suppressor candidate 3	protein coding gene	no	.	2.748	0.020	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	exon_skip;mutex_exons	no
MIR3681HG_LS004	chr2:12007843|12083449:+	MIR3681HG	MIR3681 host gene	lncRNA gene	no	ENST00000450916.1	0.183	0.010	0.752	0.003(30)	0.001(1)	0.01(179)	non tumor-specific	nAS	yes
UN_ENPEP_LS0007	chr4:110368640|110369944:+	ENPEP	glutamyl aminopeptidase	protein coding gene	no	.	1.939	3.015	0.000	0.021(203)	0.101(71)	0(0)	non tumor-specific	exon_skip	no
ALB_LS005	chr4:73404406|73405116:+	ALB	Fas binding factor 1	protein coding gene	no	ENST00000441319.5;ENST00000295897.8;ENST00000621628.4;ENST00000515133.5;ENST00000621085.4;ENST00000415165.6;ENST00000509063.5;ENST00000401494.7;ENST00000441319.5;ENST00000295897.8;ENST00000621628.4;ENST00000515133.5;ENST00000621085.4;ENST00000415165.6;ENST00000509063.5;ENST00000401494.7	452.118	4137.097	1.931	0.255(2444)	0.447(314)	0.657(11417)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
CIAO3_LS019	chr16:737329|739643:-	CIAO3	cytosolic iron-sulfur assembly component 3	protein coding gene	no	ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5;ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5;ENST00000251588.6;ENST00000540986.5;ENST00000565425.5;ENST00000565341.5;ENST00000562752.5;ENST00000565065.5;ENST00000566614.5;ENST00000567455.5	33.853	21.893	18.610	0.992(9501)	0.997(700)	0.979(17014)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_EHD1_LS0041	chr11:64853863|64854315:+	EHD1	EH domain containing 1	protein coding gene	no	.	1.896	0.458	0.000	0.003(28)	0.003(2)	0(0)	non tumor-specific	nAS	no
CNNM1_LS002	chr10:99357655|99360835:+	CNNM1	cyclin and CBS domain divalent metal cation transport mediator 1	protein coding gene	no	ENST00000356713.4	4.979	2.480	1.565	0.312(2993)	0.281(197)	0.498(8663)	non tumor-specific	nAS	yes
AC118549.1_LS007	chr1:77581069|77581776:-	AC118549.1	-	protein coding gene	no	ENST00000481346.5;ENST00000370801.7;ENST00000476275.5;ENST00000370798.5;ENST00000476195.5	24.568	16.668	20.708	0.974(9330)	0.989(694)	0.973(16910)	non tumor-specific	nAS	yes
UN_AP4M1_LS0010	chr7:100106780|100110191:+	AP4M1	adaptor related protein complex 4 subunit mu 1	protein coding gene	no	.	1.378	0.014	0.000	0.008(72)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
UN_PLEKHA5_LS0074	chr12:19369777|19375531:+	PLEKHA5	pleckstrin homology domain containing A5	protein coding gene	no	.	12.633	3.952	0.000	0.017(167)	0.017(12)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
UN_RAPGEF1_LS0070	chr9:131604053|131619051:-	RAPGEF1	Rap guanine nucleotide exchange factor 1	protein coding gene	no	.	1.028	0.313	0.000	0.004(39)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
UN_INPP1_LS0002	chr2:190344074|190348888:+	INPP1	inositol polyphosphate-1-phosphatase	protein coding gene	no	.	1.070	0.241	0.000	0.007(65)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
ANP32B_LS002	chr9:97984692|97994631:+	ANP32B	acidic nuclear phosphoprotein 32 family member B	protein coding gene	no	ENST00000473205.1	0.254	0.152	0.795	0.091(873)	0.073(51)	0.342(5936)	non tumor-specific	nAS	yes
ATP6V1G2-DDX39B_LS018	chr6:31542443|31544698:-	ATP6V1G2-DDX39B	ATP6V1G2-DDX39B readthrough (NMD candidate)	protein coding gene	no	ENST00000475917.1	0.106	0.006	0.743	0.021(204)	0.006(4)	0.064(1118)	non tumor-specific	nAS	yes
UN_KALRN_LS0047	chr3:124398871|124408283:+	KALRN	kalirin RhoGEF kinase	protein coding gene	no	.	10.247	1.947	0.000	0.006(62)	0.006(4)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_MIR4689_UP_LS0003	chr1:5986327|5993665:-	MIR4689	microRNA 4689	small non-coding RNA gene	no	.	0.884	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
PAK3_LS021	chrX:111146565|111147737:+	PAK3	p21 (RAC1) activated kinase 3	protein coding gene	no	ENST00000372010.5;ENST00000518291.5;ENST00000429193.5;ENST00000360648.8;ENST00000262836.6	0.154	0.895	1.215	0.028(266)	0.014(10)	0.133(2318)	non tumor-specific	exon_skip	yes
UN_AL138479.1_UP_LS0004	chr14:53947308|53951853:-	AL138479.1	-	pseudogene	no	.	6.374	0.861	0.000	0.004(43)	0.004(3)	0(0)	non tumor-specific	exon_skip	no
PIK3C2G_LS017	chr12:18371311|18372540:+	PIK3C2G	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein coding gene	no	ENST00000538458.1	0.531	0.091	0.759	0.017(161)	0.078(55)	0.037(636)	non tumor-specific	nAS	yes
AC107419.1_LS004	chrX:27336493|27398751:-	AC107419.1	-	lncRNA gene	no	ENST00000422048.5	3.134	0.110	0.752	0.036(341)	0.004(3)	0.039(678)	non tumor-specific	nAS	yes
GAK_LS053	chr4:904779|913607:-	GAK	cyclin G associated kinase	protein coding gene	no	ENST00000512325.3	0.072	0.114	1.319	0.771(7384)	0.852(598)	0.659(11456)	non tumor-specific	alt_3prime;exon_skip	yes
SH2B2_LS008	chr7:102314427|102314512:+	SH2B2	SH2B adaptor protein 2	protein coding gene	no	ENST00000617975.2;ENST00000536178.3	25.895	7.825	8.690	0.944(9041)	0.909(638)	0.97(16865)	non tumor-specific	nAS	yes
COL12A1_LS035	chr6:75123404|75123948:-	COL12A1	collagen type XII alpha 1 chain	protein coding gene	no	ENST00000615798.4;ENST00000322507.12;ENST00000345356.10;ENST00000416123.6;ENST00000483888.6	26.246	13.746	17.964	0.827(7927)	0.915(642)	0.87(15118)	non tumor-specific	exon_skip;intron_retention	yes
UN_ATP2C1_LS0038	chr3:130969396|130975337:+	ATP2C1	ATPase secretory pathway Ca2+ transporting 1	protein coding gene	no	.	2.362	0.019	0.000	0.003(28)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
ACPP_LS007	chr3:132332344|132333406:+	ACPP	acid phosphatase 3	protein coding gene	no	ENST00000489084.5	0.100	0.104	0.810	0.096(924)	0.165(116)	0.025(435)	non tumor-specific	alt_3prime;exon_skip	yes
SERPINA5_LS017	chr14:94587981|94590041:+	SERPINA5	serpin family A member 5	protein coding gene	no	ENST00000553780.5;ENST00000329597.11;ENST00000556730.1;ENST00000554760.5;ENST00000554866.5;ENST00000556775.5;ENST00000554276.1	77.272	163.112	5.496	0.55(5271)	0.823(578)	0.816(14184)	non tumor-specific	nAS	yes
UN_PHF12_LS0028	chr17:28925259|28926782:-	PHF12	PHD finger protein 12	protein coding gene	no	.	1.837	0.326	0.000	0.002(22)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip;intron_retention	no
TOX2_LS001	chr20:43914990|43973367:+	TOX2	TOX high mobility group box family member 2	protein coding gene	no	ENST00000341197.8	1.368	0.972	1.972	0.68(6517)	0.781(548)	0.691(12005)	non tumor-specific	exon_skip	yes
UN_HERC1_LS0061	chr15:63658718|63659452:-	HERC1	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein coding gene	no	.	1.209	0.133	0.000	0.011(106)	0.011(8)	0(0)	non tumor-specific	exon_skip	no
UN_TMEM198B_LS0037	chr12:55835039|55835464:+	TMEM198B	transmembrane protein 198B (pseudogene)	pseudogene	no	.	3.989	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_LYPLA2_LS0084	chr1:23795160|23795323:-	LYPLA2	lysophospholipase 2	protein coding gene	no	.	5.775	1.457	0.000	0.011(107)	0.006(4)	0(0)	non tumor-specific	nAS	no
MTOR_LS023	chr1:11130777|11133080:-	MTOR	mechanistic target of rapamycin kinase	protein coding gene	yes	ENST00000361445.8	24.864	17.740	15.195	0.961(9211)	0.984(691)	0.975(16954)	non tumor-specific	alt_5prime;exon_skip	yes
UN_GSTK1_LS0013	chr7:143265014|143268812:-	GSTK1	glutathione S-transferase kappa 1	protein coding gene	no	.	0.792	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
ABCA8_LS003	chr17:68869779|68875260:-	ABCA8	ATP binding cassette subfamily A member 8	protein coding gene	no	ENST00000269080.6;ENST00000430352.6;ENST00000586539.5	13.749	26.228	50.734	0.515(4937)	0.962(675)	0.943(16396)	non tumor-specific	exon_skip	yes
TUBGCP3_LS002	chr13:112489697|112499045:-	TUBGCP3	tubulin gamma complex associated protein 3	protein coding gene	no	ENST00000261965.7;ENST00000649778.1	20.864	11.175	26.967	0.986(9443)	0.994(698)	0.978(16996)	non tumor-specific	exon_skip	yes
ATAD3A_LS005	chr1:1517412|1517716:+	ATAD3A	ATPase family AAA domain containing 3A	protein coding gene	no	ENST00000378756.7;ENST00000378755.9;ENST00000339113.8;ENST00000536055.5;ENST00000439513.1	39.956	15.793	4.084	0.996(9540)	0.996(699)	0.947(16462)	non tumor-specific	alt_3prime;exon_skip	yes
MIEF1_LS020	chr22:39514224|39515230:+	MIEF1	mitochondrial elongation factor 1	protein coding gene	no	ENST00000402881.5	0.710	0.259	0.710	0.147(1408)	0.158(111)	0.15(2605)	non tumor-specific	intron_retention	yes
UN_ADGRG1_LS0211	chr16:57664070|57664114:+	ADGRG1	adhesion G protein-coupled receptor G1	protein coding gene	no	.	443.368	14.265	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
ARRB1_LS006	chr11:75271724|75272895:-	ARRB1	arrestin beta 1	protein coding gene	no	ENST00000420843.6;ENST00000531012.1	7.028	13.800	10.199	0.949(9090)	0.989(694)	0.962(16724)	non tumor-specific	exon_skip	yes
RHOH_LS016	chr4:40205832|40209463:+	RHOH	ras homolog family member H	protein coding gene	no	ENST00000514143.1	0.391	0.082	0.697	0.021(202)	0.02(14)	0.056(966)	non tumor-specific	exon_skip	yes
UN_TLE4_LS0016	chr9:79718971|79719545:+	TLE4	TLE family member 4, transcriptional corepressor	protein coding gene	no	.	1.046	0.968	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_CLVS1_LS0022	chr8:61239552|61299677:+	CLVS1	clavesin 1	protein coding gene	no	.	2.320	0.456	0.000	0.002(19)	0.006(4)	0(0)	non tumor-specific	exon_skip	no
DOCK10_LS037	chr2:224837831|224839954:-	DOCK10	dedicator of cytokinesis 10	protein coding gene	no	ENST00000409592.7;ENST00000258390.11;ENST00000644695.1;ENST00000645028.1;ENST00000472652.1	6.596	2.995	3.639	0.774(7411)	0.862(605)	0.842(14631)	non tumor-specific	intron_retention	yes
RPP40_LS004	chr6:4996420|4999809:-	RPP40	ribonuclease P/MRP subunit p40	protein coding gene	no	ENST00000618533.4	0.484	0.487	1.115	0.623(5965)	0.474(333)	0.448(7792)	non tumor-specific	exon_skip	yes
UN_CCSER1_LS0083	chr4:91268985|91300012:-	CCSER1	coiled-coil serine rich protein 1	protein coding gene	no	.	4.805	1.184	0.000	0.009(87)	0.001(1)	0(0)	non tumor-specific	nAS	no
RNF150_LS004	chr4:140944810|140947654:-	RNF150	ring finger protein 150	protein coding gene	no	ENST00000515057.1	0.098	0.067	1.127	0.223(2141)	0.407(286)	0.196(3413)	non tumor-specific	nAS	yes
PRXL2B_LS001	chr1:2586591|2587091:+	PRXL2B	peroxiredoxin like 2B	protein coding gene	no	ENST00000493183.5;ENST00000474659.5	0.340	0.308	0.969	0.418(4003)	0.395(277)	0.448(7785)	non tumor-specific	nAS	yes
UN_SLC22A31_LS0003	chr16:89196223|89197298:-	SLC22A31	solute carrier family 22 member 31	protein coding gene	no	.	5.063	1.380	0.000	0.011(105)	0.011(8)	0(0)	non tumor-specific	alt_3prime	no
UN_RNA5SP281_UP_LS0034	chr9:31973112|32267640:+	RNA5SP281	RNA, 5S ribosomal pseudogene 281	no	no	.	2.342	0.000	0.000	0.003(32)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC022145.1_UP_LS0001	chr19:22921209|22932828:-	AC022145.1	-	lncRNA gene	no	.	0.917	0.158	0.000	0.002(16)	0.001(1)	0(0)	non tumor-specific	nAS	no
MAOB_LS007	chrX:43781544|43793419:-	MAOB	monoamine oxidase B	protein coding gene	no	ENST00000378069.4	61.504	93.747	48.418	0.827(7926)	0.993(697)	0.942(16381)	non tumor-specific	nAS	yes
CCDC120_LS002	chrX:49059059|49061959:+	CCDC120	coiled-coil domain containing 120	protein coding gene	no	ENST00000496529.6;ENST00000606812.5;ENST00000603906.1	0.718	0.517	1.549	0.616(5903)	0.792(556)	0.28(4860)	non tumor-specific	alt_5prime	yes
RYR3_LS103	chr15:33835072|33836906:+	RYR3	ryanodine receptor 3	protein coding gene	no	ENST00000634891.1;ENST00000415757.7;ENST00000389232.9;ENST00000622037.1;ENST00000634418.1;ENST00000635749.1	2.350	1.382	3.152	0.045(434)	0.093(65)	0.657(11425)	non tumor-specific	alt_3prime;exon_skip	yes
UN_AC233728.2_UP_LS0001	chrX:53491335|53532836:-	AC233728.2	-	pseudogene	no	.	3.709	0.467	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_CCNT2_LS0019	chr2:134947899|134953230:+	CCNT2	cyclin T2	protein coding gene	no	.	2.577	0.119	0.000	0.003(27)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
RHCG_LS010	chr15:89471855|89472722:-	RHCG	Rh family C glycoprotein	protein coding gene	no	ENST00000560081.5;ENST00000560081.5	40.828	172.307	1.430	0.135(1289)	0.154(108)	0.451(7836)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
SH3TC1_LS037	chr4:8225216|8226980:+	SH3TC1	SH3 domain and tetratricopeptide repeats 1	protein coding gene	no	ENST00000506360.5;ENST00000502669.5;ENST00000245105.7;ENST00000515682.5;ENST00000514274.1;ENST00000509553.1	17.480	10.701	9.579	0.975(9341)	0.99(695)	0.949(16499)	non tumor-specific	alt_3prime;exon_skip	yes
UN_DIAPH2_LS0050	chrX:97238873|97247715:+	DIAPH2	diaphanous related formin 2	protein coding gene	no	.	1.166	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL138900.2_UP_LS0008	chr1:157291982|157310583:-	AL138900.2	-	lncRNA gene	no	.	6.050	0.881	0.000	0.029(277)	0.077(54)	0(0)	non tumor-specific	nAS	no
UN_PTOV1-AS1_LS0007	chr19:49844892|49851568:-	PTOV1-AS1	PTOV1 antisense RNA 1	lncRNA gene	no	.	1.017	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
UN_RPSAP68_UP_LS0027	chr21:8397138|8441203:+	RPSAP68	ribosomal protein SA pseudogene 68	pseudogene	no	.	164.094	41.882	0.000	0.002(17)	0.003(2)	0(0)	non tumor-specific	nAS	no
CEP164P1_LS001	chr10:45004075|45015962:-	CEP164P1	centrosomal protein 164 pseudogene 1	pseudogene	no	ENST00000456938.6	1.151	0.750	0.675	0.016(149)	0.004(3)	0.013(234)	non tumor-specific	nAS	yes
AC245123.1_LS002	chr8:2595700|2596625:-	AC245123.1	-	lncRNA gene	no	ENST00000612422.1	2.200	0.069	0.882	0.008(73)	0.006(4)	0.198(3450)	non tumor-specific	nAS	yes
CCNT2_LS017	chr2:134946465|134947736:+	CCNT2	cyclin T2	protein coding gene	no	ENST00000419781.5	5.654	2.899	6.608	0.695(6660)	0.775(544)	0.931(16178)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RAPGEF6_LS030	chr5:131508207|131510314:-	RAPGEF6	Rap guanine nucleotide exchange factor 6	protein coding gene	no	ENST00000509018.5;ENST00000507093.5;ENST00000296859.10;ENST00000627212.2;ENST00000308008.10;ENST00000515170.5;ENST00000510071.5;ENST00000514179.5;ENST00000513227.5;ENST00000504575.5;ENST00000504039.2	5.378	3.146	2.972	0.615(5897)	0.789(554)	0.879(15285)	non tumor-specific	nAS	yes
WIPF1_LS017	chr2:174597858|174598171:-	WIPF1	WAS/WASL interacting protein family member 1	protein coding gene	no	ENST00000392546.6	0.201	0.319	0.687	0.077(741)	0.081(57)	0.092(1594)	non tumor-specific	alt_5prime;exon_skip	yes
UN_CHADL_LS0007	chr22:41230438|41230562:-	CHADL	chondroadherin like	protein coding gene	no	.	2.180	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
ZNF451_LS003	chr6:57090274|57090833:+	ZNF451	zinc finger protein 451	protein coding gene	no	ENST00000502749.1	0.083	0.164	0.661	0.42(4024)	0.436(306)	0.121(2104)	non tumor-specific	alt_3prime;exon_skip	yes
GLIPR1L2_LS002	chr12:75391350|75403017:+	GLIPR1L2	GLIPR1 like 2	protein coding gene	no	ENST00000378692.7	0.260	0.188	0.856	0.086(825)	0.226(159)	0.349(6074)	non tumor-specific	alt_5prime;exon_skip	yes
RAB18_LS007	chr10:27509930|27526828:+	RAB18	RAB18, member RAS oncogene family	protein coding gene	yes	ENST00000535776.5;ENST00000356940.10;ENST00000621805.4;ENST00000465772.5;ENST00000423465.1	64.911	54.407	62.687	0.993(9512)	0.997(700)	0.979(17020)	non tumor-specific	exon_skip;mutex_exons	yes
GCNT2_LS008	chr6:10521594|10621351:+	GCNT2	glucosaminyl (N-acetyl) transferase 2 (I blood group)	protein coding gene	no	ENST00000489819.5	0.113	0.069	0.631	0.047(446)	0.205(144)	0.023(404)	non tumor-specific	exon_skip	yes
AC010127.1_LS021	chr2:166171558|166199639:+	AC010127.1	-	lncRNA gene	no	ENST00000447809.2;ENST00000630020.2	2.010	0.174	1.028	0.006(59)	0.009(6)	0.15(2611)	non tumor-specific	nAS	yes
UN_ARMC12_UP_LS0001	chr6:35731585|35733462:+	ARMC12	armadillo repeat containing 12	protein coding gene	no	.	1.324	0.344	0.000	0.005(52)	0.007(5)	0(0)	non tumor-specific	nAS	no
LINC01102_LS005	chr2:104507406|104512043:+	LINC01102	long intergenic non-protein coding RNA 1102	lncRNA gene	no	ENST00000447380.1	4.468	0.877	11.154	0.112(1071)	0.05(35)	0.21(3650)	non tumor-specific	nAS	yes
GRIP1_LS001	chr12:66349246|66353417:-	GRIP1	nuclear receptor coactivator 2	protein coding gene	no	ENST00000398016.7;ENST00000359742.8;ENST00000538164.5;ENST00000538211.5;ENST00000535323.1	3.819	2.175	3.941	0.698(6684)	0.741(520)	0.658(11446)	non tumor-specific	exon_skip	yes
NBEAL2_LS019	chr3:46995633|46995714:+	NBEAL2	neurobeachin like 2	protein coding gene	no	ENST00000450053.7;ENST00000416683.5	19.980	10.395	11.757	0.79(7568)	0.852(598)	0.961(16699)	non tumor-specific	nAS	yes
AC004057.1_LS001	chr4:113214428|113217056:-	AC004057.1	-	pseudogene	no	ENST00000356247.4	0.110	0.000	0.705	0.001(13)	0(0)	0.006(101)	non tumor-specific	nAS	yes
UN_TAF15_LS0177	chr17:35844623|35844771:+	TAF15	TATA-box binding protein associated factor 15	protein coding gene	yes	.	25.126	3.498	0.000	0.002(19)	0.001(1)	0(0)	non tumor-specific	nAS	no
ARHGAP12_LS026	chr10:31861658|31908172:-	ARHGAP12	Rho GTPase activating protein 12	protein coding gene	no	ENST00000375245.8;ENST00000396144.8;ENST00000311380.8;ENST00000375250.9;ENST00000344936.6	17.568	15.783	10.112	0.899(8618)	0.972(682)	0.958(16657)	non tumor-specific	exon_skip	yes
RASA4B_LS013	chr7:102491123|102493116:-	RASA4B	RAS p21 protein activator 4B	protein coding gene	no	ENST00000465829.5;ENST00000495352.5;ENST00000306682.6	8.215	6.701	1.172	0.935(8962)	0.95(667)	0.251(4370)	non tumor-specific	exon_skip;mutex_exons	yes
UN_USP9YP28_UP_LS0006	chrY:18991578|19441268:-	USP9YP28	USP9Y pseudogene 28	pseudogene	no	.	3.453	0.000	0.000	0.004(37)	0(0)	0(0)	non tumor-specific	nAS	no
UN_MLLT1_LS0019	chr19:6210900|6210950:+	MLLT1	MLLT1 super elongation complex subunit	protein coding gene	yes	.	5.681	0.159	0.000	0.005(46)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RF00002_UP_LS0078	chr22:11703167|12177922:-	RF00002	-	small non-coding RNA gene	no	.	3.718	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
SUCLG1_LS020	chr2:84449752|84459173:-	SUCLG1	succinate-CoA ligase GDP/ADP-forming subunit alpha	protein coding gene	no	ENST00000393868.6;ENST00000442240.5;ENST00000430989.1	40.507	55.356	79.286	0.995(9531)	0.994(698)	0.979(17021)	non tumor-specific	alt_3prime;exon_skip	yes
ARHGAP33_LS010	chr19:35779124|35780211:+	ARHGAP33	Rho GTPase activating protein 33	protein coding gene	no	ENST00000378944.9;ENST00000590893.5;ENST00000314737.9;ENST00000007510.8	12.749	5.019	18.995	0.619(5927)	0.429(301)	0.975(16948)	non tumor-specific	nAS	yes
CIRBP_LS009	chr19:1261641|1270928:+	CIRBP	cold inducible RNA binding protein	protein coding gene	no	.;.	2.415	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
AP003716.1_LS003	chr11:67888324|67906010:+	AP003716.1	-	lncRNA gene	no	ENST00000533670.1	0.124	0.093	0.688	0.026(250)	0.058(41)	0.002(30)	non tumor-specific	nAS	yes
UN_SNAP29_LS0003	chr22:20870533|20870855:+	SNAP29	synaptosome associated protein 29	protein coding gene	no	.	2.264	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	exon_skip;intron_retention	no
SI_LS010	chr3:164996772|164998540:-	SI	sucrase-isomaltase	protein coding gene	no	ENST00000264382.7	14.592	21.343	1.381	0.097(927)	0.142(100)	0.06(1048)	non tumor-specific	nAS	yes
UN_CASC15_LS0073	chr6:21886309|21909470:+	CASC15	cancer susceptibility 15	lncRNA gene	no	.	3.205	0.264	0.000	0.043(414)	0.038(27)	0(0)	non tumor-specific	nAS	no
AC111006.1_LS006	chr4:42264185|42267069:+	AC111006.1	-	lncRNA gene	no	ENST00000645181.1	1.747	1.961	0.000	0(4)	0.001(1)	0(0)	non tumor-specific	nAS	yes
ALG1L2_LS002	chr3:130082036|130091261:+	ALG1L2	ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2	protein coding gene	no	ENST00000425059.1	1.217	0.000	0.859	0.006(56)	0(0)	0.01(171)	non tumor-specific	nAS	yes
MYO10_LS020	chr5:16704685|16710908:-	MYO10	myosin X	protein coding gene	no	ENST00000274203.13;ENST00000513610.5;ENST00000515803.5;ENST00000505695.5;ENST00000513882.5;ENST00000506343.5;ENST00000512061.5;ENST00000510401.6	37.015	18.720	10.289	0.905(8669)	0.959(673)	0.931(16180)	non tumor-specific	alt_3prime	yes
COL9A3_LS037	chr20:62836333|62836478:+	COL9A3	collagen type IX alpha 3 chain	protein coding gene	no	ENST00000649368.1;ENST00000343916.7;ENST00000466192.5	17.087	5.802	9.830	0.633(6061)	0.689(484)	0.915(15904)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
UN_AL591178.1_UP_LS0008	chr1:23986274|24010507:+	AL591178.1	-	lncRNA gene	no	.	2.298	1.221	0.000	0.007(70)	0.031(22)	0(0)	non tumor-specific	nAS	no
UN_AC009093.10_LS0030	chr16:29260267|29302287:+	AC009093.10	-	lncRNA gene	no	.	2.160	0.315	0.000	0.004(42)	0.009(6)	0(0)	non tumor-specific	nAS	no
LSM4_LS012	chr19:18312702|18323018:-	LSM4	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein coding gene	no	ENST00000252816.10;ENST00000252816.10	0.163	1.083	0.891	0.848(8129)	0.866(608)	0.474(8231)	non tumor-specific	alt_3prime;exon_skip	yes
MYO9A_LS036	chr15:71935484|71938852:-	MYO9A	myosin IXA	protein coding gene	no	ENST00000356056.9;ENST00000564571.5;ENST00000444904.5;ENST00000563542.5;ENST00000566885.5;ENST00000566744.5;ENST00000563648.1;ENST00000565528.1	1.090	0.881	3.668	0.789(7564)	0.876(615)	0.902(15673)	non tumor-specific	nAS	yes
UN_AL445472.1_LS0007	chrX:55908800|56002825:+	AL445472.1	-	lncRNA gene	no	.	1.868	0.909	0.000	0.015(145)	0.031(22)	0(0)	non tumor-specific	nAS	no
RNF212B_LS013	chr14:23262711|23264174:+	RNF212B	ring finger protein 212B	protein coding gene	no	ENST00000470818.5	0.290	0.026	0.749	0.012(118)	0.095(67)	0.004(73)	non tumor-specific	exon_skip	yes
UN_HDGF_LS0079	chr1:156742934|156743084:+	HDGF	heparin binding growth factor	protein coding gene	no	.	3.239	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC004830.1_LS0005	chr7:50869908|50898784:-	AC004830.1	-	lncRNA gene	no	.	1.798	0.067	0.000	0.02(191)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_LAPTM5_LS0007	chr1:30732657|30739878:+	LAPTM5	lysosomal protein transmembrane 5	protein coding gene	no	.	3.079	0.000	0.000	0.002(20)	0(0)	0(0)	non tumor-specific	nAS	no
UN_WNK4_LS0028	chr17:42796548|42796686:+	WNK4	WNK lysine deficient protein kinase 4	protein coding gene	no	.	8.417	3.196	0.000	0.018(169)	0.024(17)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
AC006445.2_LS001	chr4:13632182|13632491:-	AC006445.2	-	pseudogene	no	ENST00000510061.2	0.202	0.000	0.627	0(3)	0(0)	0.07(1214)	non tumor-specific	nAS	yes
UN_MAP4K1_LS0024	chr19:38614439|38616195:-	MAP4K1	mitogen-activated protein kinase kinase kinase kinase 1	protein coding gene	yes	.	1.471	0.176	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
AQR_LS030	chr15:34940999|34942012:-	AQR	aquarius intron-binding spliceosomal factor	protein coding gene	no	ENST00000156471.9;ENST00000543879.6	17.600	11.789	7.882	0.87(8332)	0.947(665)	0.951(16533)	non tumor-specific	nAS	yes
UN_ZNF260_LS0025	chr19:36515014|36515650:-	ZNF260	zinc finger protein 260	protein coding gene	no	.	1.105	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	intron_retention	no
LINC00893_LS011	chrX:149534374|149536174:-	LINC00893	long intergenic non-protein coding RNA 893	lncRNA gene	no	ENST00000618757.4;ENST00000447209.5;ENST00000431214.5;ENST00000608342.5	0.405	0.147	2.796	0.332(3178)	0.346(243)	0.844(14669)	non tumor-specific	nAS	yes
UN_MUC4_LS0052	chr3:195772661|195773443:+	MUC4	mucin 4, cell surface associated	protein coding gene	yes	.	5.997	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SAMD9L_LS012	chr7:93145532|93148194:-	SAMD9L	sterile alpha motif domain containing 9 like	protein coding gene	yes	ENST00000439952.5;ENST00000439952.5	0.157	0.117	0.669	0.32(3070)	0.486(341)	0.12(2092)	non tumor-specific	alt_3prime;exon_skip	yes
AC127894.1_LS002	chr12:69219580|69222494:+	AC127894.1	-	lncRNA gene	no	ENST00000650080.1	3.936	0.000	0.000	0.001(5)	0(0)	0(0)	non tumor-specific	nAS	yes
CROCCP3_LS001	chr1:16469007|16475825:-	CROCCP3	CROCC pseudogene 3	pseudogene	no	ENST00000591348.5	0.652	0.151	0.793	0.022(211)	0.014(10)	0.181(3149)	non tumor-specific	nAS	yes
UN_HRAT17_LS0001	chr7:112956711|112973605:-	HRAT17	-	lncRNA gene	no	.	2.917	0.000	0.000	0.002(15)	0(0)	0(0)	non tumor-specific	nAS	no
POLD2_LS026	chr7:44122109|44123511:-	POLD2	DNA polymerase delta 2, accessory subunit	protein coding gene	no	ENST00000610533.4;ENST00000436844.5;ENST00000470867.5;ENST00000496539.1;ENST00000610533.4;ENST00000436844.5;ENST00000470867.5;ENST00000496539.1	30.012	15.604	37.655	0.97(9293)	0.979(687)	0.979(17009)	non tumor-specific	alt_3prime;exon_skip	yes
KLF18_LS001	chr1:44138011|44138664:-	KLF18	Kruppel like factor 18	protein coding gene	no	ENST00000634670.1	0.574	0.000	0.680	0.011(102)	0.001(1)	0.001(19)	non tumor-specific	nAS	yes
UN_PDE9A_LS0054	chr21:42768292|42768557:+	PDE9A	phosphodiesterase 9A	protein coding gene	no	.	1.828	0.097	0.000	0.01(93)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
MIR646HG_LS008	chr20:60100219|60101095:+	MIR646HG	MIR646 host gene	lncRNA gene	no	ENST00000428772.5;ENST00000439507.5;ENST00000457508.1	0.448	0.105	0.719	0.018(174)	0.007(5)	0.057(983)	non tumor-specific	nAS	yes
UN_AC011472.4_UP_LS0002	chr19:11197717|11216137:+	AC011472.4	-	lncRNA gene	no	.	0.930	0.831	0.000	0.004(39)	0.019(13)	0(0)	non tumor-specific	nAS	no
UN_PTPRN_LS0011	chr2:219299128|219299626:+	PTPRN	protein tyrosine phosphatase receptor type N	protein coding gene	no	.	2.250	0.266	0.000	0.054(519)	0.001(1)	0(0)	non tumor-specific	nAS	no
IRAK1_LS022	chrX:154017067|154018006:-	IRAK1	interleukin 1 receptor associated kinase 1	protein coding gene	no	ENST00000369980.7;ENST00000369974.6;ENST00000477274.1;ENST00000393687.6;ENST00000429936.6;ENST00000443220.1	90.430	42.905	69.961	0.992(9500)	0.997(700)	0.979(17021)	non tumor-specific	exon_skip	yes
LINC01123_LS001	chr2:109987190|109987561:+	LINC01123	long intergenic non-protein coding RNA 1123	lncRNA gene	no	ENST00000419296.1	2.547	1.635	1.757	0.419(4015)	0.481(338)	0.639(11102)	non tumor-specific	nAS	yes
NUMA1_LS027	chr11:72010854|72012895:-	NUMA1	nuclear mitotic apparatus protein 1	protein coding gene	no	ENST00000541584.5;ENST00000358965.10;ENST00000620566.4;ENST00000616538.4;ENST00000545721.1;ENST00000541584.5;ENST00000358965.10;ENST00000620566.4;ENST00000616538.4;ENST00000545721.1	37.959	27.600	53.180	0.984(9428)	0.98(688)	0.979(17020)	non tumor-specific	alt_5prime;exon_skip	yes
ZMAT3_LS007	chr3:179067809|179071595:-	ZMAT3	zinc finger matrin-type 3	protein coding gene	no	ENST00000311417.6	1.062	0.909	1.984	0.78(7473)	0.887(623)	0.802(13941)	non tumor-specific	exon_skip	yes
UN_XPO4_LS0015	chr13:20800320|20800831:-	XPO4	exportin 4	protein coding gene	no	.	4.600	0.118	0.000	0.003(32)	0.003(2)	0(0)	non tumor-specific	alt_3prime	no
KCNMB2-AS1_LS013	chr3:178801934|178841545:-	KCNMB2-AS1	KCNMB2 antisense RNA 1	lncRNA gene	no	ENST00000451742.5	2.120	0.125	0.670	0.075(716)	0.003(2)	0.008(138)	non tumor-specific	nAS	yes
UN_LIMS2_LS0099	chr2:127674421|127674621:-	LIMS2	LIM zinc finger domain containing 2	protein coding gene	no	.	1.118	0.416	0.000	0.026(252)	0.024(17)	0(0)	non tumor-specific	exon_skip	no
UN_NUTM2B-AS1_LS0022	chr10:79716631|79766271:-	NUTM2B-AS1	NUTM2B antisense RNA 1	lncRNA gene	no	.	5.527	0.173	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
TTC1_LS014	chr5:160051183|160065277:+	TTC1	tetratricopeptide repeat domain 1	protein coding gene	no	.;.	6.667	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip	yes
UNC5C_LS012	chr4:95242593|95244977:-	UNC5C	unc-5 netrin receptor C	protein coding gene	yes	ENST00000610318.4;ENST00000453304.5;ENST00000513796.5;ENST00000506749.5	3.908	2.215	2.182	0.254(2438)	0.526(369)	0.596(10359)	non tumor-specific	nAS	yes
UN_KRT73-AS1_UP_LS0409	chr12:52473599|52492856:+	KRT73-AS1	KRT73 antisense RNA 1	lncRNA gene	no	.	19.442	10.327	0.000	0.017(161)	0.007(5)	0(0)	non tumor-specific	nAS	no
UN_TTC23_LS0013	chr15:99139467|99146015:-	TTC23	tetratricopeptide repeat domain 23	protein coding gene	no	.	2.348	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
PMM2_LS008	chr16:8801910|8804767:+	PMM2	phosphomannomutase 2	protein coding gene	no	ENST00000566983.5;ENST00000268261.8;ENST00000564030.5;ENST00000566604.5;ENST00000564069.1	32.134	15.510	16.465	0.986(9448)	0.994(698)	0.966(16785)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;mutex_exons	yes
UN_PRSS23_LS0061	chr11:86922098|86951208:-	PRSS23	serine protease 23	protein coding gene	no	.	3.244	1.673	0.000	0.014(132)	0.031(22)	0(0)	non tumor-specific	nAS	no
SNCB_LS011	chr5:176629965|176630280:-	SNCB	synuclein beta	protein coding gene	no	ENST00000310112.7;ENST00000614675.4	0.642	1.354	4.970	0.089(854)	0.007(5)	0.139(2416)	non tumor-specific	alt_3prime;exon_skip	yes
NMT2_LS003	chr10:15109215|15109702:-	NMT2	N-myristoyltransferase 2	protein coding gene	no	ENST00000378165.8;ENST00000378150.1	13.727	12.951	16.601	0.896(8580)	0.929(652)	0.975(16945)	non tumor-specific	exon_skip	yes
ZNF217_LS010	chr20:53583168|53597631:-	ZNF217	zinc finger protein 217	protein coding gene	yes	ENST00000540425.1	1.809	1.109	1.257	0.138(1322)	0.118(83)	0.269(4678)	non tumor-specific	exon_skip	yes
STK32B_LS001	chr4:5051915|5139905:+	STK32B	serine/threonine kinase 32B	protein coding gene	no	ENST00000282908.9;ENST00000512018.5	1.910	1.440	1.701	0.413(3953)	0.531(373)	0.666(11585)	non tumor-specific	alt_5prime;exon_skip	yes
POMT1_LS018	chr9:131509022|131509743:+	POMT1	protein O-mannosyltransferase 1	protein coding gene	no	ENST00000404875.6;ENST00000423007.5;ENST00000441334.5;ENST00000341012.11;ENST00000372228.7;ENST00000402686.7;ENST00000448212.5;ENST00000430619.1;ENST00000462375.5	16.151	12.293	19.861	0.98(9391)	0.993(697)	0.978(17006)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_PCBP4_LS0043	chr3:51962077|51962810:-	PCBP4	poly(rC) binding protein 4	protein coding gene	no	.	1.998	0.019	0.000	0.004(34)	0.001(1)	0(0)	non tumor-specific	nAS	no
CLPP_LS004	chr19:6362542|6364452:+	CLPP	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein coding gene	no	ENST00000245816.9;ENST00000596070.1;ENST00000594780.1;ENST00000596149.5	184.832	93.293	110.364	0.997(9555)	0.997(700)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
UN_AC016710.1_LS0003	chr2:139469854|139475769:+	AC016710.1	-	lncRNA gene	no	.	2.452	0.000	0.000	0.005(46)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01605_LS008	chr8:37476012|37529097:-	LINC01605	long intergenic non-protein coding RNA 1605	lncRNA gene	no	ENST00000519738.5;ENST00000517363.1	0.526	0.136	0.725	0.127(1217)	0.066(46)	0.097(1684)	non tumor-specific	nAS	yes
MCAT_LS010	chr22:43137298|43141162:-	MCAT	malonyl-CoA-acyl carrier protein transacylase	protein coding gene	no	ENST00000290429.10;ENST00000290429.10	44.024	28.076	12.688	0.994(9525)	0.997(700)	0.975(16945)	non tumor-specific	alt_5prime;exon_skip	yes
REV1_LS032	chr2:99451501|99462496:-	REV1	REV1 DNA directed polymerase	protein coding gene	no	ENST00000413697.5	0.098	0.157	1.409	0.616(5906)	0.758(532)	0.7(12167)	non tumor-specific	exon_skip	yes
AL139125.1_LS003	chr10:7469593|7471911:-	AL139125.1	-	lncRNA gene	no	ENST00000420395.1	0.197	0.000	0.670	0.007(63)	0(0)	0.017(303)	non tumor-specific	nAS	yes
UN_UBTF_LS0038	chr17:44209731|44210124:-	UBTF	upstream binding transcription factor	protein coding gene	no	.	24.594	13.204	0.000	0.011(101)	0.013(9)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
SPAG5-AS1_LS002	chr17:28599839|28606296:+	SPAG5-AS1	SPAG5 antisense RNA 1	lncRNA gene	no	ENST00000556050.1	0.297	0.053	0.665	0.018(172)	0.026(18)	0.044(760)	non tumor-specific	nAS	yes
UN_KIAA1671_LS0062	chr22:25110997|25111719:-	KIAA1671	KIAA1671	protein coding gene	no	.	0.869	1.052	0.000	0.006(56)	0.044(31)	0(0)	non tumor-specific	nAS	no
MRPS27_LS025	chr5:72297702|72320181:-	MRPS27	mitochondrial ribosomal protein S27	protein coding gene	no	ENST00000508863.6;ENST00000508863.6	0.136	0.069	0.663	0.506(4852)	0.557(391)	0.053(928)	non tumor-specific	alt_5prime;exon_skip	yes
NCKIPSD_LS007	chr3:48679183|48679377:-	NCKIPSD	NCK interacting protein with SH3 domain	protein coding gene	no	ENST00000416649.6;ENST00000294129.6;ENST00000470006.1	42.219	25.591	29.816	0.993(9516)	0.997(700)	0.979(17012)	non tumor-specific	alt_3prime;exon_skip	yes
UN_MARK3_LS0020	chr14:103428127|103428387:+	MARK3	microtubule affinity regulating kinase 3	protein coding gene	no	.	1.936	0.000	0.000	0.001(13)	0(0)	0(0)	non tumor-specific	nAS	no
UN_CEBPB-AS1_LS0009	chr20:50188627|50189446:-	CEBPB-AS1	CEBPB antisense RNA 1	lncRNA gene	no	.	1.159	0.390	0.000	0.002(18)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_PCBD2_LS0117	chr5:134927221|134967426:+	PCBD2	pterin-4 alpha-carbinolamine dehydratase 2	protein coding gene	no	.	3.099	0.030	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
CPNE1_LS033	chr20:35632923|35655202:-	CPNE1	copine 1	protein coding gene	no	ENST00000352393.8;ENST00000440240.5;ENST00000437100.5;ENST00000414711.5	0.505	0.858	12.108	0.915(8765)	0.942(661)	0.975(16954)	non tumor-specific	exon_skip	yes
UN_KATNAL1_LS0009	chr13:30210442|30210866:-	KATNAL1	katanin catalytic subunit A1 like 1	protein coding gene	no	.	3.283	1.056	0.000	0.001(13)	0.003(2)	0(0)	non tumor-specific	nAS	no
RUNX2_LS009	chr6:45422957|45431863:+	RUNX2	RUNX family transcription factor 2	protein coding gene	yes	ENST00000371432.7;ENST00000465038.6;ENST00000647337.1;ENST00000371438.5;ENST00000371436.10;ENST00000576263.5;ENST00000478660.6;ENST00000646519.1;ENST00000359524.7;ENST00000625924.1	3.244	0.816	2.107	0.575(5506)	0.526(369)	0.723(12568)	non tumor-specific	exon_skip	yes
CEACAM20_LS012	chr19:44522912|44523986:-	CEACAM20	CEA cell adhesion molecule 20	protein coding gene	no	ENST00000621342.4;ENST00000620096.4;ENST00000614577.4;ENST00000614924.4;ENST00000611497.4;ENST00000617951.1	5.093	14.354	0.838	0.05(475)	0.064(45)	0.041(721)	non tumor-specific	nAS	yes
MGAT4B_LS022	chr5:179799250|179799954:-	MGAT4B	alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B	protein coding gene	no	ENST00000518980.5;ENST00000523382.5;ENST00000518980.5;ENST00000523382.5	0.412	0.284	0.749	0.866(8298)	0.708(497)	0.179(3118)	non tumor-specific	alt_5prime;exon_skip	yes
UN_REM1_LS0002	chr20:31476785|31477804:+	REM1	RRAD and GEM like GTPase 1	protein coding gene	no	.	3.711	0.886	0.000	0.015(141)	0.028(20)	0(0)	non tumor-specific	nAS	no
ADAM32_LS040	chr8:39275866|39283586:+	ADAM32	ADAM metallopeptidase domain 32	protein coding gene	no	ENST00000524303.5	0.361	0.220	0.742	0.218(2091)	0.144(101)	0.167(2909)	non tumor-specific	exon_skip	yes
TMEM63C_LS012	chr14:77225461|77231588:+	TMEM63C	transmembrane protein 63C	protein coding gene	no	ENST00000554766.5;ENST00000298351.4	3.780	1.896	2.801	0.333(3195)	0.293(206)	0.476(8274)	non tumor-specific	nAS	yes
UN_LHFPL3_LS0054	chr7:104752803|104799818:-	LHFPL3	LHFPL tetraspan subfamily member 3	protein coding gene	no	.	15.504	0.000	0.000	0.023(220)	0(0)	0(0)	non tumor-specific	nAS	no
XRCC2_LS001	chr7:152649363|152660701:-	XRCC2	X-ray repair cross complementing 2	protein coding gene	no	ENST00000495707.1;ENST00000359321.1	4.688	0.570	0.964	0.66(6322)	0.328(230)	0.382(6641)	non tumor-specific	alt_3prime;exon_skip	yes
UN_WBP11_LS0052	chr12:14789067|14790531:+	WBP11	WW domain binding protein 11	protein coding gene	no	.	2.077	0.000	0.000	0.002(22)	0(0)	0(0)	non tumor-specific	nAS	no
UN_SLC12A8_LS0008	chr3:125084420|125088310:-	SLC12A8	solute carrier family 12 member 8	protein coding gene	no	.	5.694	0.856	0.000	0.02(192)	0.013(9)	0(0)	non tumor-specific	exon_skip	no
UN_PMS2P1_LS0010	chr7:100329019|100330235:-	PMS2P1	PMS1 homolog 2, mismatch repair system component pseudogene 1	pseudogene	no	.	10.959	0.368	0.000	0.004(34)	0.006(4)	0(0)	non tumor-specific	nAS	no
ALG12_LS010	chr22:49913517|49913604:-	ALG12	ALG12 alpha-1,6-mannosyltransferase	protein coding gene	no	ENST00000330817.10	41.549	28.506	20.097	0.984(9426)	0.994(698)	0.978(17008)	non tumor-specific	alt_5prime;exon_skip	yes
UN_HERC6_UP_LS0014	chr4:88361843|88362050:+	HERC6	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	protein coding gene	no	.	1.747	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TYROBP_LS0001	chr19:35904537|35907486:+	TYROBP	transmembrane immune signaling adaptor TYROBP	protein coding gene	no	.	11.444	7.036	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
MIOS_LS015	chr7:7568123|7572436:+	MIOS	meiosis regulator for oocyte development	protein coding gene	no	ENST00000340080.8;ENST00000405785.5;ENST00000433056.5;ENST00000445169.1	9.176	5.188	8.316	0.975(9341)	0.989(694)	0.965(16770)	non tumor-specific	exon_skip	yes
UN_UBE2Z_LS0058	chr17:48928550|48928617:+	UBE2Z	ubiquitin conjugating enzyme E2 Z	protein coding gene	no	.	21.172	3.577	0.000	0.003(32)	0.006(4)	0(0)	non tumor-specific	nAS	no
SLC9A3R2_LS013	chr16:2037600|2037826:+	SLC9A3R2	SLC9A3 regulator 2	protein coding gene	no	ENST00000424542.6;ENST00000563587.5;ENST00000565855.5;ENST00000566198.1;ENST00000564033.1	181.543	197.456	169.847	0.996(9539)	0.997(700)	0.977(16977)	non tumor-specific	alt_3prime	yes
SEPT2_LS032	chr2:241320287|241324216:+	SEPT2	septin 6	protein coding gene	no	ENST00000445030.5;ENST00000434955.5;ENST00000402092.6	0.203	0.399	1.231	0.645(6177)	0.736(517)	0.603(10480)	non tumor-specific	exon_skip;mutex_exons	yes
RPS6KA6_LS007	chrX:84104657|84105787:-	RPS6KA6	ribosomal protein S6 kinase A6	protein coding gene	yes	ENST00000620340.4;ENST00000262752.4;ENST00000495332.1	4.050	4.000	2.634	0.405(3876)	0.681(478)	0.771(13409)	non tumor-specific	nAS	yes
EPB41_LS007	chr1:28987905|28997215:+	EPB41	erythrocyte membrane protein band 4.1	protein coding gene	yes	ENST00000644780.1	1.308	0.119	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	exon_skip	yes
UN_MT-CO1_LS0118	chrM:7376|7405:-	MT-CO1	mitochondrially encoded cytochrome c oxidase I	protein coding gene	no	.	773.023	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
SUPT20H_LS003	chr13:37009809|37010552:-	SUPT20H	SPT20 homolog, SAGA complex component	protein coding gene	no	ENST00000484078.5;ENST00000490716.5;ENST00000472948.1;ENST00000469488.6;ENST00000350612.10	17.976	6.347	19.661	0.964(9237)	0.957(672)	0.979(17016)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLC12A6_LS039	chr15:34336752|34337961:-	SLC12A6	solute carrier family 12 member 6	protein coding gene	no	ENST00000559236.5	0.047	0.017	0.653	0.178(1705)	0.254(178)	0.012(200)	non tumor-specific	alt_3prime;intron_retention	yes
KLHL4_LS003	chrX:87614570|87617932:+	KLHL4	kelch like family member 4	protein coding gene	no	ENST00000373119.8;ENST00000373114.4	5.433	4.968	1.793	0.235(2252)	0.486(341)	0.546(9483)	non tumor-specific	nAS	yes
MDM1_LS018	chr12:68321446|68321525:-	MDM1	Mdm1 nuclear protein	protein coding gene	no	ENST00000540418.5;ENST00000303145.11;ENST00000411698.6;ENST00000538454.2	5.961	3.512	5.693	0.918(8795)	0.937(658)	0.956(16616)	non tumor-specific	alt_3prime;exon_skip;intron_retention	yes
UN_ZMIZ2_LS0044	chr7:44764486|44764945:+	ZMIZ2	zinc finger MIZ-type containing 2	protein coding gene	no	.	4.598	0.395	0.000	0.003(25)	0.001(1)	0(0)	non tumor-specific	alt_3prime	no
UN_CNOT7_LS0033	chr8:17245931|17246231:-	CNOT7	CCR4-NOT transcription complex subunit 7	protein coding gene	no	.	0.836	0.006	0.000	0.005(49)	0.001(1)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
NIPSNAP2_LS013	chr7:55978395|55981473:+	NIPSNAP2	nipsnap homolog 2	protein coding gene	no	ENST00000446692.5;ENST00000322090.7;ENST00000437587.5;ENST00000472404.1;ENST00000446692.5;ENST00000322090.7;ENST00000437587.5;ENST00000472404.1	52.823	37.692	57.717	0.985(9440)	0.993(697)	0.979(17018)	non tumor-specific	alt_3prime;exon_skip	yes
KIF12_LS032	chr9:114096478|114097301:-	KIF12	kinesin family member 12	protein coding gene	no	ENST00000640553.1;ENST00000639832.1;ENST00000640217.1;ENST00000374118.8;ENST00000468460.2	24.444	34.676	3.429	0.591(5665)	0.799(561)	0.502(8719)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_TMCC3_LS0025	chr12:94582538|94644716:-	TMCC3	transmembrane and coiled-coil domain family 3	protein coding gene	no	.	1.183	0.000	0.000	0.002(19)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AL592429.2_LS0002	chr6:139286902|139301512:+	AL592429.2	-	lncRNA gene	no	.	3.246	1.142	0.000	0.002(16)	0.003(2)	0(0)	non tumor-specific	nAS	no
AOX3P_LS001	chr2:200696011|200699931:+	AOX3P	aldehyde oxidase 3, pseudogene	pseudogene	no	ENST00000467633.1	0.336	0.084	0.791	0.034(326)	0.02(14)	0.183(3182)	non tumor-specific	nAS	yes
ITSN1_LS028	chr21:33781548|33781994:+	ITSN1	intersectin 1	protein coding gene	no	ENST00000399353.5;ENST00000381318.7;ENST00000381291.8;ENST00000381285.8;ENST00000399367.7;ENST00000399352.5;ENST00000399355.6;ENST00000399349.5;ENST00000399338.8;ENST00000379960.9	12.858	10.922	22.064	0.933(8937)	0.986(692)	0.974(16936)	non tumor-specific	exon_skip	yes
UN_PFKFB3_LS0041	chr10:6233530|6233555:+	PFKFB3	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein coding gene	no	.	17.409	5.241	0.000	0.001(13)	0.001(1)	0(0)	non tumor-specific	nAS	no
TMC6_LS046	chr17:78126648|78128612:-	TMC6	symbol withdrawn, see [HGNC:18021](/data/gene-symbol-report/#!/hgnc_id/HGNC:18021)	protein coding gene	no	ENST00000589553.5;ENST00000586697.5;ENST00000589553.5;ENST00000586697.5	0.035	0.054	0.772	0.739(7077)	0.67(470)	0.215(3744)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
EP400_LS013	chr12:131981596|131982093:+	EP400	E1A binding protein p400	protein coding gene	no	ENST00000389561.6;ENST00000333577.8;ENST00000389562.6	2.709	1.489	1.655	0.63(6037)	0.715(502)	0.726(12620)	non tumor-specific	exon_skip;intron_retention	yes
UN_SLC25A37_LS0028	chr8:23571896|23571958:-	SLC25A37	solute carrier family 25 member 37	protein coding gene	no	.	4.919	0.191	0.000	0.002(20)	0.003(2)	0(0)	non tumor-specific	nAS	no
UN_LINC02588_LS0043	chr14:26731156|26779795:+	LINC02588	long intergenic non-protein coding RNA 2588	lncRNA gene	no	.	3.299	0.143	0.000	0.028(265)	0.004(3)	0(0)	non tumor-specific	nAS	no
UN_AP006748.1_LS0002	chr21:41576665|41581265:-	AP006748.1	-	lncRNA gene	no	.	3.085	0.395	0.000	0.005(52)	0.001(1)	0(0)	non tumor-specific	nAS	no
AC093843.1_LS001	chr2:220791156|220797461:+	AC093843.1	-	lncRNA gene	no	ENST00000424395.1	0.203	0.050	0.860	0.04(380)	0.043(30)	0.043(740)	non tumor-specific	nAS	yes
ROBO3_LS019	chr11:124876738|124877161:+	ROBO3	roundabout guidance receptor 3	protein coding gene	no	ENST00000531545.5	0.118	0.033	0.642	0.111(1064)	0.108(76)	0.007(118)	non tumor-specific	alt_5prime;intron_retention	yes
UN_OFD1_LS0032	chrX:13766069|13767127:+	OFD1	OFD1 centriole and centriolar satellite protein	protein coding gene	no	.	4.710	1.351	0.000	0.002(21)	0.003(2)	0(0)	non tumor-specific	alt_5prime;exon_skip	no
DAPK3_LS008	chr19:3964373|3964631:-	DAPK3	death associated protein kinase 3	protein coding gene	yes	ENST00000545797.6;ENST00000301264.7;ENST00000596311.5;ENST00000601824.1	124.093	85.266	98.064	0.997(9548)	0.997(700)	0.979(17021)	non tumor-specific	alt_3prime	yes
CLUHP3_LS006	chr16:31703363|31704155:+	CLUHP3	clustered mitochondria homolog pseudogene 3	pseudogene	no	ENST00000563678.1	3.140	0.000	0.715	0(3)	0(0)	0.034(593)	non tumor-specific	nAS	yes
PIEZO2_LS024	chr18:10715816|10718200:-	PIEZO2	piezo type mechanosensitive ion channel component 2	protein coding gene	no	ENST00000302079.10;ENST00000383408.6;ENST00000580640.5;ENST00000503781.7;ENST00000582913.5	5.898	2.847	1.728	0.357(3419)	0.457(321)	0.578(10047)	non tumor-specific	nAS	yes
APBB3_LS004	chr5:140560754|140561018:-	APBB3	amyloid beta precursor protein binding family B member 3	protein coding gene	no	ENST00000515056.5;ENST00000509914.5;ENST00000510241.5;ENST00000467078.5;ENST00000356738.6;ENST00000354402.9;ENST00000357560.8;ENST00000511896.5;ENST00000412920.7;ENST00000504872.5;ENST00000506289.5	26.203	12.396	52.610	0.966(9255)	0.976(685)	0.979(17021)	non tumor-specific	alt_5prime;exon_skip	yes
TAF1C_LS011	chr16:84181463|84181746:-	TAF1C	TATA-box binding protein associated factor, RNA polymerase I subunit C	protein coding gene	no	.;.;.	0.872	0.000	0.000	0.001(7)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
SLK_LS016	chr10:104008356|104018160:+	SLK	STE20 like kinase	protein coding gene	no	ENST00000335753.8;ENST00000474260.1	30.380	24.901	27.776	0.966(9260)	0.986(692)	0.977(16982)	non tumor-specific	exon_skip	yes
CSF1R_LS012	chr5:150060972|150061491:-	CSF1R	colony stimulating factor 1 receptor	protein coding gene	yes	ENST00000504875.5;ENST00000286301.7;ENST00000515239.5;ENST00000513609.1	54.187	38.037	19.318	0.942(9026)	0.986(692)	0.957(16635)	non tumor-specific	alt_5prime;exon_skip	yes
ADAM8_LS018	chr10:133271289|133271528:-	ADAM8	ADAM metallopeptidase domain 8	protein coding gene	no	ENST00000445355.7;ENST00000415217.7;ENST00000485491.6	16.203	4.689	4.345	0.856(8205)	0.768(539)	0.926(16101)	non tumor-specific	nAS	yes
PRKAA2_LS006	chr1:56693852|56695935:+	PRKAA2	protein kinase AMP-activated catalytic subunit alpha 2	protein coding gene	yes	ENST00000371244.8;ENST00000610361.1	5.192	7.084	2.649	0.499(4785)	0.707(496)	0.766(13316)	non tumor-specific	nAS	yes
MYO5C_LS030	chr15:52246042|52246917:-	MYO5C	myosin VC	protein coding gene	no	ENST00000261839.11;ENST00000560809.5;ENST00000558902.5	9.728	10.056	4.107	0.713(6829)	0.877(616)	0.799(13887)	non tumor-specific	exon_skip	yes
SARS2_LS016	chr19:38921596|38922002:-	SARS2	seryl-tRNA synthetase 2, mitochondrial	protein coding gene	no	ENST00000600042.5	0.072	0.060	0.671	0.161(1542)	0.118(83)	0.111(1929)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
VANGL1_LS006	chr1:115659767|115663661:+	VANGL1	VANGL planar cell polarity protein 1	protein coding gene	no	ENST00000369510.8	3.136	2.005	0.617	0.194(1861)	0.201(141)	0.037(650)	non tumor-specific	alt_5prime	yes
UN_LINC01060_LS0018	chr4:188434965|188455438:-	LINC01060	long intergenic non-protein coding RNA 1060	lncRNA gene	no	.	1.894	2.166	0.000	0.014(134)	0.063(44)	0(0)	non tumor-specific	nAS	no
KIAA1614_LS005	chr1:180928573|180935115:+	KIAA1614	KIAA1614	protein coding gene	no	ENST00000367588.8;ENST00000367587.1	2.445	2.408	4.209	0.56(5363)	0.761(534)	0.846(14698)	non tumor-specific	exon_skip	yes
UN_CNOT8_LS0006	chr5:154858768|154863212:+	CNOT8	CCR4-NOT transcription complex subunit 8	protein coding gene	no	.	8.430	0.000	0.000	0.003(33)	0(0)	0(0)	non tumor-specific	alt_3prime;exon_skip;mutex_exons	no
NOP14-AS1_LS001	chr4:2935735|2937752:+	NOP14-AS1	NOP14 antisense RNA 1	lncRNA gene	no	ENST00000505731.5;ENST00000507999.5	0.701	0.386	2.128	0.828(7929)	0.905(635)	0.831(14448)	non tumor-specific	nAS	yes
UN_SORCS2_LS0038	chr4:7531629|7582200:+	SORCS2	sortilin related VPS10 domain containing receptor 2	protein coding gene	no	.	2.227	0.154	0.000	0.004(38)	0.001(1)	0(0)	non tumor-specific	exon_skip	no
ANKRD37_LS009	chr4:185397310|185398947:+	ANKRD37	ankyrin repeat domain 37	protein coding gene	no	.;.	9.861	0.000	0.000	0(3)	0(0)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
UN_E2F4_LS0015	chr16:67198066|67198118:-	E2F4	E2F transcription factor 4	protein coding gene	no	.	3.864	0.000	0.000	0.002(16)	0(0)	0(0)	non tumor-specific	nAS	no
SMG1P2_LS015	chr16:29541430|29541580:-	SMG1P2	SMG1 pseudogene 2	pseudogene	no	ENST00000566127.1	1.748	0.433	0.728	0.117(1117)	0.063(44)	0.003(50)	non tumor-specific	nAS	yes
KPTN_LS003	chr19:47476714|47476803:-	KPTN	kaptin, actin binding protein	protein coding gene	no	ENST00000338134.7;ENST00000594208.5	21.658	8.372	17.618	0.989(9479)	0.993(697)	0.979(17015)	non tumor-specific	exon_skip	yes
ABCC9_LS041	chr12:21926063|21933782:-	ABCC9	ATP binding cassette subfamily C member 9	protein coding gene	no	ENST00000261200.8;ENST00000261201.8;ENST00000326684.8;ENST00000538350.5;ENST00000636888.1;ENST00000621589.1	3.704	4.014	6.214	0.424(4062)	0.795(558)	0.847(14716)	non tumor-specific	nAS	yes
LMO3_LS006	chr12:16560538|16600655:-	LMO3	LIM domain only 3	protein coding gene	yes	ENST00000261169.10;ENST00000541295.5;ENST00000354662.5;ENST00000441439.6;ENST00000447609.5;ENST00000320122.10;ENST00000540848.5;ENST00000535535.5;ENST00000537304.5;ENST00000534946.5;ENST00000541846.5;ENST00000539534.5;ENST00000546281.5;ENST00000537757.5;ENST00000546279.5;ENST00000538051.5;ENST00000545436.5;ENST00000540590.1;ENST00000261169.10;ENST00000541295.5;ENST00000354662.5;ENST00000441439.6;ENST00000447609.5;ENST00000320122.10;ENST00000540848.5;ENST00000535535.5;ENST00000537304.5;ENST00000534946.5;ENST00000541846.5;ENST00000539534.5;ENST00000546281.5;ENST00000537757.5;ENST00000546279.5;ENST00000538051.5;ENST00000545436.5;ENST00000540590.1	5.821	10.812	11.390	0.496(4748)	0.829(582)	0.841(14613)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	yes
UN_PPFIBP1_LS0025	chr12:27635115|27636334:+	PPFIBP1	PPFIA binding protein 1	protein coding gene	no	.	1.452	0.000	0.000	0.001(14)	0(0)	0(0)	non tumor-specific	nAS	no
LINC01927_LS004	chr18:76638688|76638785:-	LINC01927	long intergenic non-protein coding RNA 1927	lncRNA gene	no	ENST00000582231.1	0.995	0.295	0.934	0.004(42)	0.023(16)	0.022(380)	non tumor-specific	nAS	yes
UN_TRIM56_LS0033	chr7:101088613|101088784:-	TRIM56	tripartite motif containing 56	protein coding gene	no	.	1.048	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
UN_FP565260.5_UP_LS0002	chr21:5054735|5054768:+	FP565260.5	-	lncRNA gene	no	.	1.506	0.000	0.000	0.003(26)	0(0)	0(0)	non tumor-specific	nAS	no
IFT122_LS029	chr3:129464781|129466890:+	IFT122	intraflagellar transport 122	protein coding gene	no	ENST00000431818.6;ENST00000296266.7;ENST00000512220.5;ENST00000348417.6	0.120	0.200	1.061	0.296(2834)	0.419(294)	0.536(9322)	non tumor-specific	exon_skip	yes
MARCO_LS011	chr2:118977515|118977828:+	MARCO	macrophage receptor with collagenous structure	protein coding gene	no	ENST00000327097.4	13.282	62.713	4.682	0.572(5485)	0.685(481)	0.754(13102)	non tumor-specific	alt_3prime;exon_skip	yes
UN_JAGN1_LS0009	chr3:9891845|9892915:+	JAGN1	jagunal homolog 1	protein coding gene	no	.	5.787	1.046	0.000	0.008(75)	0.007(5)	0(0)	non tumor-specific	exon_skip	no
ATP8B2_LS027	chr1:154344785|154344971:+	ATP8B2	ATPase phospholipid transporting 8B2	protein coding gene	no	ENST00000368489.3	29.902	18.033	30.243	0.925(8859)	0.967(679)	0.977(16983)	non tumor-specific	alt_3prime;intron_retention	yes
UN_NPIPB11_LS0035	chr16:29381812|29383967:+	NPIPB11	nuclear pore complex interacting protein family member B11	protein coding gene	no	.	3.563	0.841	0.000	0.019(180)	0.003(2)	0(0)	non tumor-specific	nAS	no
FRG1HP_LS004	chr9:40992775|40994633:+	FRG1HP	FSHD region gene 1 family member H, pseudogene	pseudogene	no	ENST00000611606.4	0.317	0.341	4.248	0.897(8590)	0.905(635)	0.939(16325)	non tumor-specific	nAS	yes
UN_DNAJA2_LS0008	chr16:46960306|46964611:-	DNAJA2	DnaJ heat shock protein family (Hsp40) member A2	protein coding gene	no	.	2.597	0.494	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	alt_3prime;exon_skip	no
UN_PPP4R3B_LS0047	chr2:55604076|55615383:-	PPP4R3B	protein phosphatase 4 regulatory subunit 3B	protein coding gene	no	.	2.060	0.450	0.000	0.016(157)	0.021(15)	0(0)	non tumor-specific	alt_5prime	no
LRCH3_LS023	chr3:197858905|197870160:+	LRCH3	leucine rich repeats and calponin homology domain containing 3	protein coding gene	no	ENST00000473177.1	0.023	0.012	0.894	0.222(2126)	0.189(133)	0.078(1349)	non tumor-specific	exon_skip	yes
UN_ST5_LS0010	chr11:8693722|8693834:+	ST5	DENN domain containing 2B	protein coding gene	yes	.	3.764	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC012531.2_LS0010	chr12:54017414|54033353:+	AC012531.2	-	protein coding gene	no	.	0.757	0.091	0.000	0.002(18)	0.003(2)	0(0)	non tumor-specific	nAS	no
ACACA_LS004	chr17:37097166|37097830:-	ACACA	acetyl-CoA carboxylase alpha	protein coding gene	no	ENST00000616317.4;ENST00000612895.4;ENST00000614428.4;ENST00000619546.4;ENST00000617649.4;ENST00000614482.4;ENST00000613776.1	15.108	8.437	17.166	0.986(9448)	0.994(698)	0.97(16867)	non tumor-specific	nAS	yes
PLEKHA7_LS028	chr11:16803295|16812403:-	PLEKHA7	pleckstrin homology domain containing A7	protein coding gene	no	ENST00000525581.2	0.006	0.032	0.642	0.418(4001)	0.583(409)	0.002(32)	non tumor-specific	nAS	yes
UN_PLEC_LS0672	chr8:143925296|143925477:-	PLEC	plectin	protein coding gene	no	.	8.744	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_AC008966.1_LS0001	chr5:53110405|53112240:+	AC008966.1	-	lncRNA gene	no	.	1.941	0.522	0.000	0.013(124)	0.031(22)	0(0)	non tumor-specific	nAS	no
MCC_LS022	chr5:113101945|113104192:-	MCC	MCC regulator of WNT signaling pathway	protein coding gene	yes	ENST00000302475.8;ENST00000515367.6;ENST00000408903.6;ENST00000514701.5;ENST00000502648.5;ENST00000505604.1;ENST00000506605.6;ENST00000511847.2	7.165	7.106	4.839	0.829(7945)	0.946(664)	0.888(15443)	non tumor-specific	exon_skip	yes
FIP1L1_LS019	chr4:53428183|53440582:+	FIP1L1	factor interacting with PAPOLA and CPSF1	protein coding gene	yes	ENST00000358575.9;ENST00000513975.5;ENST00000514543.5;ENST00000504094.1	29.935	17.527	25.704	0.987(9460)	0.996(699)	0.979(17015)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_UHRF1_UP_LS0002	chr19:4838816|4873441:+	UHRF1	ubiquitin like with PHD and ring finger domains 1	protein coding gene	yes	.	1.009	0.000	0.000	0.001(11)	0(0)	0(0)	non tumor-specific	nAS	no
MLF2_LS017	chr12:6752362|6752643:-	MLF2	myeloid leukemia factor 2	protein coding gene	no	ENST00000540710.5	0.123	0.056	0.859	0.199(1909)	0.147(103)	0.104(1809)	non tumor-specific	alt_5prime;intron_retention	yes
FAM86EP_LS005	chr4:3943372|3953111:-	FAM86EP	family with sequence similarity 86 member E, pseudogene	pseudogene	no	ENST00000507301.5	0.146	0.047	1.448	0.752(7205)	0.792(556)	0.723(12563)	non tumor-specific	nAS	yes
UN_TLN2_LS0092	chr15:62835177|62835480:-	TLN2	talin 2	protein coding gene	no	.	1.127	0.472	0.000	0.004(36)	0.013(9)	0(0)	non tumor-specific	nAS	no
UN_MINDY4_LS0017	chr7:30817567|30828679:+	MINDY4	MINDY lysine 48 deubiquitinase 4	protein coding gene	no	.	1.478	0.168	0.000	0.001(14)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_AC010768.2_UP_LS0004	chr11:44620360|44636295:-	AC010768.2	-	lncRNA gene	no	.	2.915	0.187	0.000	0.002(15)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_FP236383.1_UP_LS0602	chr21:8216684|8260749:+	FP236383.1	-	lncRNA gene	no	.	177.732	7.571	0.000	0.007(64)	0.003(2)	0(0)	non tumor-specific	nAS	no
PLD2_LS005	chr17:4808114|4808274:+	PLD2	phospholipase D2	protein coding gene	no	ENST00000263088.10;ENST00000572940.5;ENST00000575246.6;ENST00000575316.1	15.160	10.829	16.195	0.942(9030)	0.977(686)	0.977(16975)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	yes
RPS21_LS003	chr20:62387136|62387321:+	RPS21	ribosomal protein S21	protein coding gene	no	ENST00000343986.8;ENST00000492356.2;ENST00000343986.8;ENST00000492356.2	2837.656	1161.014	1019.938	0.866(8299)	0.885(621)	0.979(17021)	non tumor-specific	alt_3prime;alt_5prime	yes
SRP19_LS009	chr5:112864528|112891603:+	SRP19	signal recognition particle 19	protein coding gene	no	ENST00000506997.2	0.326	0.144	0.815	0.033(312)	0.021(15)	0.278(4827)	non tumor-specific	nAS	yes
NLRC5_LS040	chr16:57046641|57047545:+	NLRC5	NLR family CARD domain containing 5	protein coding gene	no	ENST00000539881.5;ENST00000262510.10;ENST00000436936.5;ENST00000539144.5;ENST00000538805.5;ENST00000545081.5;ENST00000538453.5;ENST00000540182.5;ENST00000538930.5;ENST00000537056.5;ENST00000534931.1	18.854	6.481	10.696	0.975(9342)	0.96(674)	0.959(16672)	non tumor-specific	exon_skip	yes
AZIN2_LS017	chr1:33082354|33083954:+	AZIN2	antizyme inhibitor 2	protein coding gene	no	ENST00000294517.10;ENST00000462920.5;ENST00000373443.7;ENST00000373440.5;ENST00000373441.1;ENST00000294517.10;ENST00000462920.5;ENST00000373443.7;ENST00000373440.5;ENST00000373441.1	3.739	3.262	3.892	0.794(7606)	0.846(594)	0.893(15519)	non tumor-specific	alt_5prime;exon_skip;intron_retention	yes
CCDC186_LS019	chr10:114173265|114174015:-	CCDC186	coiled-coil domain containing 186	protein coding gene	no	ENST00000648613.1;ENST00000369285.7	0.278	0.884	1.304	0.606(5808)	0.813(571)	0.657(11412)	non tumor-specific	alt_3prime;exon_skip	yes
UN_PSMC1P11_UP_LS0010	chr6:4636166|4636621:+	PSMC1P11	proteasome 26S subunit, ATPase 1 pseudogene 11	pseudogene	no	.	3.734	0.497	0.000	0.02(196)	0.001(1)	0(0)	non tumor-specific	nAS	no
ITGB1BP1_LS016	chr2:9414256|9423373:-	ITGB1BP1	integrin subunit beta 1 binding protein 1	protein coding gene	no	ENST00000463190.1	0.059	0.126	3.691	0.83(7950)	0.856(601)	0.932(16199)	non tumor-specific	exon_skip	yes
KIR2DL4_LS013	chr19:54813742|54813842:+	KIR2DL4	killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4	protein coding gene	no	ENST00000396284.6;ENST00000359085.8;ENST00000345540.9;ENST00000357494.8;ENST00000463062.1;ENST00000396293.5;ENST00000346587.8;ENST00000396289.5	2.447	0.768	1.203	0.171(1642)	0.115(81)	0.281(4878)	non tumor-specific	nAS	yes
DDR2_LS014	chr1:162766063|162767229:+	DDR2	discoidin domain receptor tyrosine kinase 2	protein coding gene	yes	ENST00000446985.6;ENST00000367922.7;ENST00000367921.7	9.312	11.169	13.608	0.598(5734)	0.86(604)	0.921(16006)	non tumor-specific	exon_skip	yes
UN_MTUS1_LS0065	chr8:17755961|17758015:-	MTUS1	microtubule associated scaffold protein 1	protein coding gene	yes	.	1.205	0.434	0.000	0.008(76)	0.013(9)	0(0)	non tumor-specific	alt_5prime;exon_skip;mutex_exons	no
TNRC18_LS038	chr7:5390628|5394440:-	TNRC18	trinucleotide repeat containing 18	protein coding gene	no	ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2;ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2;ENST00000399537.8;ENST00000430969.5;ENST00000434361.5;ENST00000399434.2	20.325	12.871	15.958	0.839(8034)	0.913(641)	0.972(16903)	non tumor-specific	alt_3prime;alt_5prime;exon_skip	yes
UN_ZNF84_LS0029	chr12:133057611|133057780:-	ZNF84	zinc finger protein 84	protein coding gene	no	.	2.243	0.268	0.000	0.002(18)	0.001(1)	0(0)	non tumor-specific	nAS	no
UN_RPL13P12_UP_LS0001	chr17:17384032|17611155:-	RPL13P12	ribosomal protein L13 pseudogene 12	pseudogene	no	.	2.757	0.000	0.000	0.001(12)	0(0)	0(0)	non tumor-specific	nAS	no
UN_TMEM88_LS0002	chr17:7855284|7855403:+	TMEM88	transmembrane protein 88	protein coding gene	no	.	3.087	1.641	0.000	0.032(311)	0.073(51)	0(0)	non tumor-specific	alt_3prime;intron_retention	no
UN_TRAJ39_UP_LS0002	chr14:22053060|22499699:+	TRAJ39	T cell receptor alpha joining 39	no	no	.	1.291	0.286	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	nAS	no
MYH8_LS035	chr17:10415708|10418645:-	MYH8	myosin heavy chain 8	protein coding gene	no	ENST00000403437.2	6.118	1.032	2.031	0.012(118)	0.021(15)	0.044(757)	non tumor-specific	nAS	yes
UN_MDN1_LS0099	chr6:89730923|89732702:-	MDN1	midasin AAA ATPase 1	protein coding gene	no	.	1.944	0.037	0.000	0.001(12)	0.001(1)	0(0)	non tumor-specific	alt_5prime	no
FRA10AC1_LS024	chr10:93694937|93698136:-	FRA10AC1	FRA10A associated CGG repeat 1	protein coding gene	no	ENST00000359204.4	49.168	34.176	41.968	0.993(9513)	0.997(700)	0.978(17006)	non tumor-specific	exon_skip	yes
UN_RIC8B_LS0035	chr12:106881646|106885421:-	RIC8B	RIC8 guanine nucleotide exchange factor B	protein coding gene	no	.	1.945	0.000	0.000	0.002(17)	0(0)	0(0)	non tumor-specific	nAS	no
UN_GSAP_LS0016	chr7:77329384|77330182:-	GSAP	gamma-secretase activating protein	protein coding gene	no	.	2.285	0.396	0.000	0.003(33)	0.004(3)	0(0)	non tumor-specific	alt_3prime;alt_5prime;exon_skip;intron_retention	no
ADGRV1_LS012	chr5:90635290|90637725:+	ADGRV1	adhesion G protein-coupled receptor V1	protein coding gene	no	ENST00000645211.1;ENST00000405460.8;ENST00000504142.2	4.587	0.127	1.033	0.045(433)	0.108(76)	0.119(2070)	non tumor-specific	nAS	yes
KLHL5_LS004	chr4:39063035|39075965:+	KLHL5	kelch like family member 5	protein coding gene	no	ENST00000261425.7;ENST00000504108.5;ENST00000381930.7	3.387	3.385	3.868	0.857(8215)	0.946(664)	0.892(15497)	non tumor-specific	exon_skip	yes
LINC01322_LS012	chr3:165647083|165654109:+	LINC01322	long intergenic non-protein coding RNA 1322	lncRNA gene	no	ENST00000496693.1	1.153	0.000	0.923	0.001(11)	0(0)	0.006(96)	non tumor-specific	nAS	yes
TLE1_LS021	chr9:81613521|81615982:-	TLE1	TLE family member 1, transcriptional corepressor	protein coding gene	yes	ENST00000376499.7;ENST00000491534.5	35.306	22.862	31.176	0.969(9286)	0.993(697)	0.977(16974)	non tumor-specific	alt_5prime;exon_skip	yes
UN_RPL29_UP_LS0007	chr3:52044880|52045327:-	RPL29	ribosomal protein L29	protein coding gene	no	.	1.871	0.000	0.000	0.001(14)	0(0)